Query 019268
Match_columns 343
No_of_seqs 209 out of 363
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 08:04:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3088 Secretory carrier memb 100.0 5.1E-97 1E-101 700.9 28.7 279 1-341 1-291 (313)
2 PF04144 SCAMP: SCAMP family; 100.0 3.5E-58 7.5E-63 412.5 18.4 171 118-325 1-177 (177)
3 KOG3088 Secretory carrier memb 99.3 6.5E-11 1.4E-15 114.1 18.5 86 77-162 64-156 (313)
4 TIGR03319 YmdA_YtgF conserved 70.2 7.2 0.00016 41.2 5.2 17 88-104 98-114 (514)
5 PF05915 DUF872: Eukaryotic pr 68.3 25 0.00055 30.2 7.2 61 142-205 41-101 (115)
6 PRK00106 hypothetical protein; 68.1 8.4 0.00018 41.1 5.2 21 83-103 121-141 (535)
7 PHA03239 envelope glycoprotein 63.7 37 0.0008 35.5 8.6 68 243-316 102-173 (429)
8 KOG2174 Leptin receptor gene-r 60.0 43 0.00093 29.8 7.1 94 155-291 14-108 (131)
9 PF14257 DUF4349: Domain of un 58.1 1.2E+02 0.0025 28.8 10.4 10 143-152 217-226 (262)
10 PF03904 DUF334: Domain of unk 55.5 1.7E+02 0.0036 28.4 10.9 20 139-158 141-160 (230)
11 PF07787 DUF1625: Protein of u 53.6 33 0.00072 32.5 5.9 20 152-171 193-212 (248)
12 KOG3859 Septins (P-loop GTPase 53.0 23 0.0005 35.8 4.9 30 81-110 334-371 (406)
13 KOG2391 Vacuolar sorting prote 52.9 1.3E+02 0.0028 30.9 10.1 10 87-96 235-244 (365)
14 PF10166 DUF2368: Uncharacteri 52.7 1.5E+02 0.0033 26.2 9.4 14 186-199 77-90 (131)
15 KOG3966 p53-mediated apoptosis 52.6 30 0.00066 34.6 5.6 26 141-168 91-116 (360)
16 PRK10263 DNA translocase FtsK; 52.3 3.6E+02 0.0079 32.4 14.7 11 273-283 142-152 (1355)
17 PF05297 Herpes_LMP1: Herpesvi 52.1 4.7 0.0001 40.4 0.0 23 177-199 103-125 (381)
18 KOG3312 Predicted membrane pro 52.0 1.5E+02 0.0032 27.4 9.4 33 80-112 41-78 (186)
19 KOG1479 Nucleoside transporter 51.0 2.2E+02 0.0049 29.6 11.8 55 273-327 156-218 (406)
20 PHA02680 ORF090 IMV phosphoryl 49.5 66 0.0014 26.9 6.2 59 157-216 17-82 (91)
21 PF14265 DUF4355: Domain of un 47.8 44 0.00096 28.1 5.2 34 81-115 50-83 (125)
22 COG3462 Predicted membrane pro 44.7 1.6E+02 0.0035 25.7 8.1 30 294-323 48-77 (117)
23 PF12737 Mating_C: C-terminal 44.1 23 0.00051 36.8 3.5 25 79-103 394-418 (419)
24 COG2991 Uncharacterized protei 43.8 23 0.0005 28.7 2.7 35 249-285 4-41 (77)
25 KOG1150 Predicted molecular ch 43.4 24 0.00051 33.9 3.2 27 80-106 168-196 (250)
26 PHA03237 envelope glycoprotein 43.2 1.7E+02 0.0037 30.7 9.5 64 243-312 95-163 (424)
27 COG0591 PutP Na+/proline sympo 41.9 2.8E+02 0.006 29.0 11.0 74 180-268 70-144 (493)
28 TIGR02051 MerR Hg(II)-responsi 41.1 67 0.0015 27.2 5.4 26 81-106 80-105 (124)
29 PRK12705 hypothetical protein; 41.0 45 0.00098 35.5 5.2 18 85-102 89-106 (508)
30 PRK10245 adrA diguanylate cycl 39.7 3.9E+02 0.0086 26.6 12.9 71 119-197 13-83 (366)
31 PF14851 FAM176: FAM176 family 37.9 32 0.0007 31.2 3.0 19 86-105 116-134 (153)
32 PF03154 Atrophin-1: Atrophin- 35.6 30 0.00066 39.4 3.0 26 81-106 715-741 (982)
33 PF00816 Histone_HNS: H-NS his 35.3 68 0.0015 25.8 4.3 37 80-116 1-39 (93)
34 KOG4721 Serine/threonine prote 34.5 29 0.00063 38.3 2.5 18 89-106 451-468 (904)
35 KOG4279 Serine/threonine prote 33.1 1.1E+02 0.0024 34.8 6.6 18 81-98 1106-1123(1226)
36 COG1422 Predicted membrane pro 32.9 3.9E+02 0.0086 25.4 9.4 11 189-199 171-181 (201)
37 KOG1996 mRNA splicing factor [ 32.7 79 0.0017 32.0 5.0 26 78-103 116-141 (378)
38 PF14265 DUF4355: Domain of un 32.5 59 0.0013 27.3 3.7 26 83-108 45-70 (125)
39 PF05884 ZYG-11_interact: Inte 32.1 5.5E+02 0.012 25.9 11.7 18 182-200 140-157 (299)
40 PF07334 IFP_35_N: Interferon- 31.9 1E+02 0.0022 25.0 4.7 12 87-98 14-25 (76)
41 PF06476 DUF1090: Protein of u 30.7 79 0.0017 27.2 4.1 23 83-105 66-88 (115)
42 PRK10263 DNA translocase FtsK; 30.6 1.8E+02 0.0039 34.8 8.1 13 178-190 69-81 (1355)
43 KOG2592 Tumor differentially e 30.4 2.1E+02 0.0045 30.1 7.7 53 144-205 30-82 (426)
44 PF04235 DUF418: Protein of un 30.1 3.6E+02 0.0079 23.3 11.3 51 249-314 94-144 (163)
45 COG5523 Predicted integral mem 29.8 5.7E+02 0.012 25.4 12.0 75 246-321 91-167 (271)
46 PF11471 Sugarporin_N: Maltopo 29.6 1.1E+02 0.0024 23.6 4.3 21 88-108 33-53 (60)
47 PRK11098 microcin B17 transpor 29.1 2.6E+02 0.0055 29.1 8.2 65 135-205 46-122 (409)
48 PF04144 SCAMP: SCAMP family; 29.1 4.4E+02 0.0095 23.9 13.2 35 112-146 2-39 (177)
49 PF13863 DUF4200: Domain of un 28.3 1.4E+02 0.003 24.8 5.2 23 82-104 16-38 (126)
50 PRK04125 murein hydrolase regu 28.2 4.4E+02 0.0095 23.6 11.1 16 276-291 77-92 (141)
51 PF00146 NADHdh: NADH dehydrog 27.4 3E+02 0.0065 27.0 8.1 26 227-252 271-296 (311)
52 PF01956 DUF106: Integral memb 27.2 1.1E+02 0.0024 27.0 4.7 19 80-98 43-61 (168)
53 PF01528 Herpes_glycop: Herpes 27.1 5.1E+02 0.011 26.8 9.9 139 146-317 8-151 (374)
54 PF05529 Bap31: B-cell recepto 26.8 1.1E+02 0.0024 27.6 4.7 24 82-105 156-179 (192)
55 PF11368 DUF3169: Protein of u 26.6 5.5E+02 0.012 24.2 13.1 27 179-205 132-159 (248)
56 TIGR02047 CadR-PbrR Cd(II)/Pb( 26.2 1.6E+02 0.0035 25.1 5.3 24 82-105 84-107 (127)
57 PF06011 TRP: Transient recept 26.0 7.2E+02 0.016 25.4 12.1 48 151-201 298-347 (438)
58 PRK10780 periplasmic chaperone 26.0 1.4E+02 0.0031 26.4 5.2 15 82-96 85-99 (165)
59 TIGR02976 phageshock_pspB phag 25.9 1.5E+02 0.0032 23.8 4.7 25 80-104 38-62 (75)
60 PF04133 Vps55: Vacuolar prote 25.8 2.6E+02 0.0056 24.3 6.5 37 154-194 7-43 (120)
61 PF05178 Kri1: KRI1-like famil 25.8 86 0.0019 26.4 3.4 15 84-98 3-17 (101)
62 PF06305 DUF1049: Protein of u 25.6 92 0.002 23.2 3.3 22 83-104 44-65 (68)
63 PF04971 Lysis_S: Lysis protei 25.0 1.4E+02 0.0031 23.8 4.3 44 282-337 24-67 (68)
64 KOG0065 Pleiotropic drug resis 24.9 3.7E+02 0.0081 32.4 9.3 25 139-163 1147-1171(1391)
65 PF03154 Atrophin-1: Atrophin- 24.8 55 0.0012 37.5 2.7 15 82-96 580-597 (982)
66 PF04272 Phospholamban: Phosph 24.7 2.2E+02 0.0047 21.3 4.9 32 135-166 18-49 (52)
67 PF09278 MerR-DNA-bind: MerR, 24.4 1.3E+02 0.0028 22.0 3.9 23 82-104 41-63 (65)
68 COG4652 Uncharacterized protei 24.2 9.8E+02 0.021 26.7 11.7 36 287-322 275-310 (657)
69 PF04201 TPD52: Tumour protein 24.1 2.7E+02 0.0059 25.7 6.5 27 81-107 30-56 (162)
70 PF04210 MtrG: Tetrahydrometha 23.4 4E+02 0.0086 21.5 8.7 29 79-107 11-39 (70)
71 COG3671 Predicted membrane pro 23.3 2.6E+02 0.0056 24.8 6.0 57 139-195 18-86 (125)
72 COG5346 Predicted membrane pro 23.0 5.5E+02 0.012 23.0 10.3 33 153-187 95-127 (136)
73 PF03938 OmpH: Outer membrane 23.0 1.4E+02 0.003 25.7 4.3 19 80-98 76-94 (158)
74 COG1008 NuoM NADH:ubiquinone o 22.9 2.9E+02 0.0062 29.7 7.3 51 259-318 377-431 (497)
75 PF04281 Tom22: Mitochondrial 22.8 2.6E+02 0.0055 25.0 6.0 20 177-196 93-112 (137)
76 PF06476 DUF1090: Protein of u 22.7 1.6E+02 0.0035 25.3 4.6 22 77-98 67-88 (115)
77 PF12737 Mating_C: C-terminal 22.4 82 0.0018 32.8 3.3 23 86-108 394-416 (419)
78 PF06673 L_lactis_ph-MCP: Lact 22.3 1.1E+02 0.0024 29.6 3.9 20 85-104 19-38 (347)
79 COG3029 FrdC Fumarate reductas 22.3 4.3E+02 0.0092 23.5 7.1 22 297-318 107-128 (129)
80 KOG4193 G protein-coupled rece 22.2 1.1E+03 0.023 26.0 12.2 30 295-324 474-503 (610)
81 PF05988 DUF899: Bacterial pro 22.1 75 0.0016 30.3 2.7 26 78-103 8-33 (211)
82 PF15390 DUF4613: Domain of un 22.1 2.1E+02 0.0045 31.6 6.2 27 81-107 545-571 (671)
83 PF00957 Synaptobrevin: Synapt 22.0 4E+02 0.0086 21.0 9.3 7 90-96 37-43 (89)
84 cd07912 Tweety_N N-terminal do 21.9 8.2E+02 0.018 25.6 10.3 101 143-249 200-307 (418)
85 KOG4721 Serine/threonine prote 21.8 1E+02 0.0022 34.3 3.8 18 95-112 450-467 (904)
86 PRK13752 putative transcriptio 21.5 1.9E+02 0.0042 25.4 5.0 24 82-105 89-112 (144)
87 cd04770 HTH_HMRTR Helix-Turn-H 21.4 1.8E+02 0.0038 24.3 4.5 24 82-105 84-107 (123)
88 PF03806 ABG_transport: AbgT p 21.2 1.1E+03 0.023 25.6 11.2 32 273-304 356-390 (502)
89 PHA03242 envelope glycoprotein 21.1 4.5E+02 0.0097 27.7 8.2 67 243-315 94-163 (428)
90 PRK02898 cobalt transport prot 20.6 40 0.00086 28.7 0.5 30 298-327 66-95 (100)
91 KOG4255 Uncharacterized conser 20.4 7.3E+02 0.016 26.1 9.3 48 273-321 151-217 (439)
92 PRK10747 putative protoheme IX 20.3 3.7E+02 0.008 26.9 7.3 9 311-319 59-67 (398)
93 PLN02189 cellulose synthase 20.3 1.5E+03 0.032 26.9 13.5 33 141-173 809-841 (1040)
No 1
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-97 Score=700.93 Aligned_cols=279 Identities=52% Similarity=0.939 Sum_probs=257.8
Q ss_pred CCCCCCCCCCCC-cCCCCCCCccccCcCCCCCcCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-
Q 019268 1 MAGRYDSNPFDE-EEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPLDT- 78 (343)
Q Consensus 1 Ma~~~d~nPf~~-~~~nPf~DPsVtq~t~~~~~~~~~~f~~~~~~~~~p~~~~~~~p~~~ep~~~~~~~~~~~~~~~~~- 78 (343)
|+ +||+|||+| |++|||+||+|+|+.+ +++++|.++||++++ .+.++|+|++.
T Consensus 1 ~s-~~d~NPFadp~~~NPF~dp~~~q~~~----------------------~~~~~p~~~~~~~~~--~~~tv~~P~~~~ 55 (313)
T KOG3088|consen 1 MS-RYDPNPFAEPELVNPFADPAVVQPAS----------------------TPPLSPLPPEPAPSD--QGPTVDIPLDSP 55 (313)
T ss_pred CC-CCCCCCCCCcccCCCCCCccccCCcc----------------------CCCCCCCCCCCCCCC--CCCccccCCCCC
Confidence 77 999999999 8899999999987622 245566666666544 45688888887
Q ss_pred ---hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC------CCCcceeecCCCccchhhHHHHHHHH
Q 019268 79 ---AADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWP------PFFPIIHHDIANEIPIHLQRLQYVAF 149 (343)
Q Consensus 79 ---~~dL~kKeeEL~rkEaEL~rRE~eL~~re~~~~~~g~~~~~nNWP------Pf~Pi~yhdI~~EIP~~~Qr~Vk~~y 149 (343)
.+|+.+||+||+|||+||+|||+||+|||++++++|..+++|||| |++|||||||++|||+|+||+||++|
T Consensus 56 ~~~a~~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~y 135 (313)
T KOG3088|consen 56 STQAKDLAKKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAY 135 (313)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999 56899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccCCCchhHHHHHHHHhHHHHHH
Q 019268 150 ATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFSFKRDCSDRVIADQLALNLVSFLV 229 (343)
Q Consensus 150 ~lWl~~~~~l~~N~~~~~~~~i~g~~~~~~~laily~i~g~P~sf~~WYrplY~A~~~~r~~~~~~~~~~~~~~~~~~~~ 229 (343)
|+||++++||+||+++|+++||+|+++++|+|||||+++|+||||+||||||||||
T Consensus 136 ylwm~~~~tL~~Niia~la~~i~g~~~~~f~Laii~fllftPcsyVcWyRPlYkAF------------------------ 191 (313)
T KOG3088|consen 136 YLWMGLVLTLLWNIIACLAWWIKGGGGTIFGLAIIWFLLFTPCSYVCWYRPLYKAF------------------------ 191 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhCCceeeEeehHHHHHh------------------------
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCcCCccchhHHHHHHHHHHHHHHHHHhhcCCcccccCcccchhHHHHHhhcCCceehHHHHHHHHHHHHHHHH
Q 019268 230 FLSHYKPSCRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLV 309 (343)
Q Consensus 230 ~~~~~~~~~r~~ss~~f~~ff~~~~~~i~f~i~~aiG~p~~f~g~g~~G~i~ai~~~~~~~~vgi~~~i~~~lf~~~a~~ 309 (343)
|+|||++|+||||+|++|++|||+++||++ |||.||||.||+.++.+.+|||+|+|++++||+++++
T Consensus 192 ---------RsDSSf~F~~FFF~y~~q~~~~v~qAvgf~----g~~~~G~i~ai~~~~~~i~v~i~m~i~a~~Ft~~av~ 258 (313)
T KOG3088|consen 192 ---------RTDSSFNFGAFFFTYFFQIVFCVFQAVGFP----GWGLCGWIPAIDVLSGNIAVGILMLIGAGLFTLEAVL 258 (313)
T ss_pred ---------ccccchhhHHHHHHHHHHHHHHHHHHHccC----CcchhhhhhHhhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999955 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChHH-HHHHHHHhhhhhh
Q 019268 310 SIWVIQQVYMYFRGSGKAA-EMKREAARGAMRA 341 (343)
Q Consensus 310 s~~~l~~V~~~yR~~G~s~-~ak~e~a~g~~~~ 341 (343)
++|+|+|||+||||+|+++ ++|+|+++|+|++
T Consensus 259 ~i~~i~kVh~~yRgsG~sf~kaq~e~~~g~~~~ 291 (313)
T KOG3088|consen 259 SIWVLQKVHSYYRGSGASFQKAQEEFTTGVMSN 291 (313)
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHHHHhhC
Confidence 9999999999999999997 5666666666654
No 2
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=100.00 E-value=3.5e-58 Score=412.49 Aligned_cols=171 Identities=42% Similarity=0.866 Sum_probs=167.3
Q ss_pred CCCCCCCCC------cceeecCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHhhhh
Q 019268 118 EEKNWPPFF------PIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVP 191 (343)
Q Consensus 118 ~~nNWPPf~------Pi~yhdI~~EIP~~~Qr~Vk~~y~lWl~~~~~l~~N~~~~~~~~i~g~~~~~~~laily~i~g~P 191 (343)
|+|||||++ ||+||||++|||+++||+||++|++||++++||+||++++++.++.|+++++|+||++|+++|+|
T Consensus 1 ~~~NwPp~~~~~~~~P~~y~di~~eIP~~~q~~v~~~y~~w~~~~~~l~~N~i~~~~~~~~~~~~~~~~lai~y~~~~~P 80 (177)
T PF04144_consen 1 RENNWPPFPKFCCIKPCFYHDISEEIPEEFQRLVKRAYYLWLFLAITLFWNFIACLALLIAGGSGSDFGLAILYLLLGTP 80 (177)
T ss_pred CCCCCCCCccccCCCCeEEeCHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHhH
Confidence 589999999 99999999999999999999999999999999999999999999988778999999999999999
Q ss_pred hhhhhhhhhhhhhhcccCCCchhHHHHHHHHhHHHHHHhhccCCCCcCCccchhHHHHHHHHHHHHHHHHHhhcCCcccc
Q 019268 192 GAYVLWYRPLYRAFSFKRDCSDRVIADQLALNLVSFLVFLSHYKPSCRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIF 271 (343)
Q Consensus 192 ~sf~~WYrplY~A~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ss~~f~~ff~~~~~~i~f~i~~aiG~p~~f 271 (343)
+||+|||||||||+ |+||+++|++||+++++|++||++++||+|
T Consensus 81 ~sf~~wyrplY~A~---------------------------------r~dss~~f~~ff~~~~~~i~f~i~~aIG~p--- 124 (177)
T PF04144_consen 81 ASFFCWYRPLYKAF---------------------------------RTDSSFRFMWFFFFFFVHIIFCIIMAIGIP--- 124 (177)
T ss_pred HHHHHHHHHHHHHH---------------------------------hcccchHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 99999999999999 999999999999999999999999999999
Q ss_pred cCcccchhHHHHHhhcCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 019268 272 KGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSG 325 (343)
Q Consensus 272 ~g~g~~G~i~ai~~~~~~~~vgi~~~i~~~lf~~~a~~s~~~l~~V~~~yR~~G 325 (343)
|+|+||||+|++++++|+.+||+++|++++|++++++++|+++|||++||++|
T Consensus 125 -~~G~~G~i~ai~~~~~~~~vgi~~~I~a~~w~~~~~~~~~~l~kv~~~yR~~G 177 (177)
T PF04144_consen 125 -GWGSCGWITAIDVFSNNKAVGILMLIVAILWTLEAVLSFWLLKKVHRYYRGTG 177 (177)
T ss_pred -cccHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999997
No 3
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=6.5e-11 Score=114.15 Aligned_cols=86 Identities=28% Similarity=0.388 Sum_probs=68.5
Q ss_pred cchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC---CCCCCCCcceeecCCCccchhhHHHHH-HHH---
Q 019268 77 DTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEE---KNWPPFFPIIHHDIANEIPIHLQRLQY-VAF--- 149 (343)
Q Consensus 77 ~~~~dL~kKeeEL~rkEaEL~rRE~eL~~re~~~~~~g~~~~~---nNWPPf~Pi~yhdI~~EIP~~~Qr~Vk-~~y--- 149 (343)
.+++||+||||||+|||+||+|||+++++...+.+..||+|.| +=.|=|+--|--||.+|.++-..++.+ +|+
T Consensus 64 ~kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm~~~~ 143 (313)
T KOG3088|consen 64 KKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWMGLVL 143 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999999855556677999887 345546788999999999987777665 443
Q ss_pred HHHHHHHHHHHHH
Q 019268 150 ATYLGLFLCLLWN 162 (343)
Q Consensus 150 ~lWl~~~~~l~~N 162 (343)
.+.++++.||.|=
T Consensus 144 tL~~Niia~la~~ 156 (313)
T KOG3088|consen 144 TLLWNIIACLAWW 156 (313)
T ss_pred HHHHHHHHHHHHH
Confidence 3456677888775
No 4
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=70.20 E-value=7.2 Score=41.22 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019268 88 ELQAKEAELRRREQDVR 104 (343)
Q Consensus 88 EL~rkEaEL~rRE~eL~ 104 (343)
+|+++|++|+++|++|.
T Consensus 98 ~Lekre~~Le~ke~~L~ 114 (514)
T TIGR03319 98 SLDKKEENLEKKEKELS 114 (514)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 5
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=68.26 E-value=25 Score=30.23 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 019268 142 QRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAF 205 (343)
Q Consensus 142 Qr~Vk~~y~lWl~~~~~l~~N~~~~~~~~i~g~~~~~~~laily~i~g~P~sf~~WYrplY~A~ 205 (343)
.|.+-.+..+.++-+++++..++..+ .-+.++....+.+-++=+|+++|+.|.+ |-+|.|.
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~-~~i~~~~~~~~~llilG~L~fIPG~Y~~--~i~y~a~ 101 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFF-GHIDGDRDRGWALLILGILCFIPGFYHT--RIAYYAW 101 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCCCcccchHHHHHHHHHhccHHHH--HHHHHHH
Confidence 44455555555444444444433321 1234555667888888889999999987 5667776
No 6
>PRK00106 hypothetical protein; Provisional
Probab=68.10 E-value=8.4 Score=41.11 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=7.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 019268 83 KKKEKELQAKEAELRRREQDV 103 (343)
Q Consensus 83 ~kKeeEL~rkEaEL~rRE~eL 103 (343)
.+|+++|++++++|+++++++
T Consensus 121 ekrE~eLe~kekeLe~reeeL 141 (535)
T PRK00106 121 SSKEKTLESKEQSLTDKSKHI 141 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 7
>PHA03239 envelope glycoprotein M; Provisional
Probab=63.73 E-value=37 Score=35.52 Aligned_cols=68 Identities=9% Similarity=0.028 Sum_probs=41.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCCcccccC----cccchhHHHHHhhcCCceehHHHHHHHHHHHHHHHHHHHHHHH
Q 019268 243 AMKFGWFFLFYLLHIGFCIFASVAPPIIFKG----KSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQ 316 (343)
Q Consensus 243 s~~f~~ff~~~~~~i~f~i~~aiG~p~~f~g----~g~~G~i~ai~~~~~~~~vgi~~~i~~~lf~~~a~~s~~~l~~ 316 (343)
.+.+++.++++++..+|.+..+|-+ .+. .+..|.-..+.+++++. .+.+....+|++|+++.+.-.|.
T Consensus 102 v~y~~~t~lv~la~aiYyivgav~i---~r~~~~~~~~~~~~~~~~~i~s~~---tlflgil~~WtlQlfVllLS~Kl 173 (429)
T PHA03239 102 LAFTFSAAFVMLAVAIYLIAGAIRI---HMCGKNFDELRGASEIARAIATMT---SLFLGLFSAWAEHAFLILLAYKQ 173 (429)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHH---HHhhcccchhhHHHHHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777654 332 14456655566655543 44555567788887765554443
No 8
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=59.96 E-value=43 Score=29.76 Aligned_cols=94 Identities=20% Similarity=0.287 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccCCCchhHHHHHHHHhHHHHHHhhccC
Q 019268 155 LFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFSFKRDCSDRVIADQLALNLVSFLVFLSHY 234 (343)
Q Consensus 155 ~~~~l~~N~~~~~~~~i~g~~~~~~~laily~i~g~P~sf~~WYrplY~A~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
.++.+.+-+++| |+.+ .---.+..++|.+.=+|+-++.=+|--+. +
T Consensus 14 ~a~G~~l~iL~C--AL~~--nwwPlf~~~~yvl~PiP~l~f~a~~~~~d-~----------------------------- 59 (131)
T KOG2174|consen 14 GAVGLLLLILGC--ALFR--NWWPLFVILFYVLSPIPNLLFIAGRTQHD-F----------------------------- 59 (131)
T ss_pred HHHHHHHHHHHh--hhcc--chHHHHHHHHHHhcCCchHHhccccceec-c-----------------------------
Confidence 445666667776 3333 22234677888888888766553322111 1
Q ss_pred CCCcCCccc-hhHHHHHHHHHHHHHHHHHhhcCCcccccCcccchhHHHHHhhcCCce
Q 019268 235 KPSCRTESA-MKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHAL 291 (343)
Q Consensus 235 ~~~~r~~ss-~~f~~ff~~~~~~i~f~i~~aiG~p~~f~g~g~~G~i~ai~~~~~~~~ 291 (343)
-+++++ .....|+. +-.+..++|+|++++.-|+.||-...-.+..|.+
T Consensus 60 ---~~~~~~~idlA~FlT------g~~vvs~falPiVl~ha~lI~~gAc~l~~tg~~i 108 (131)
T KOG2174|consen 60 ---DATSDACIDLAKFLT------GAIVVSAFALPIVLAHAGLIGWGACALVLTGNSI 108 (131)
T ss_pred ---cccccHHHHHHHHHh------cchhhhhhhhHHHHHHhhHhhhhhhhhhhcCCch
Confidence 133322 22222322 2456678899999998787777766655555443
No 9
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=58.12 E-value=1.2e+02 Score=28.76 Aligned_cols=10 Identities=10% Similarity=0.125 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 019268 143 RLQYVAFATY 152 (343)
Q Consensus 143 r~Vk~~y~lW 152 (343)
++..-..-.|
T Consensus 217 ~~~~al~~~~ 226 (262)
T PF14257_consen 217 RFRDALKNGW 226 (262)
T ss_pred HHHHHHHHHH
Confidence 3333333344
No 10
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=55.52 E-value=1.7e+02 Score=28.43 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 019268 139 IHLQRLQYVAFATYLGLFLC 158 (343)
Q Consensus 139 ~~~Qr~Vk~~y~lWl~~~~~ 158 (343)
+++|+..+.+|...-.+.+.
T Consensus 141 E~y~k~~k~~~~gi~aml~V 160 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAMLFV 160 (230)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 55677777777666544333
No 11
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=53.65 E-value=33 Score=32.46 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 019268 152 YLGLFLCLLWNIVAVTTAWI 171 (343)
Q Consensus 152 Wl~~~~~l~~N~~~~~~~~i 171 (343)
-|++.+.++...+..++.++
T Consensus 193 lmf~G~~~~~~~l~~l~~~~ 212 (248)
T PF07787_consen 193 LMFIGFFLLFSPLYTLVDWI 212 (248)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34455566666666655554
No 12
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.04 E-value=23 Score=35.79 Aligned_cols=30 Identities=37% Similarity=0.633 Sum_probs=17.0
Q ss_pred hHHHhHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 019268 81 DLKKKEKELQ--------AKEAELRRREQDVRRKEEAA 110 (343)
Q Consensus 81 dL~kKeeEL~--------rkEaEL~rRE~eL~~re~~~ 110 (343)
++++|++|+. .||+||++.|+||..+.+.+
T Consensus 334 e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~l 371 (406)
T KOG3859|consen 334 ELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRL 371 (406)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666643 45666666666665554443
No 13
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.93 E-value=1.3e+02 Score=30.92 Aligned_cols=10 Identities=40% Similarity=0.587 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 019268 87 KELQAKEAEL 96 (343)
Q Consensus 87 eEL~rkEaEL 96 (343)
++|+|+|+||
T Consensus 235 ~slkRt~EeL 244 (365)
T KOG2391|consen 235 ESLKRTEEEL 244 (365)
T ss_pred HHHHhhHHHH
Confidence 3344444444
No 14
>PF10166 DUF2368: Uncharacterised conserved protein (DUF2368); InterPro: IPR019319 This family is conserved from nematodes to humans. The function is not known.
Probab=52.74 E-value=1.5e+02 Score=26.20 Aligned_cols=14 Identities=43% Similarity=0.641 Sum_probs=10.7
Q ss_pred HHhhhhhhhhhhhh
Q 019268 186 FIAGVPGAYVLWYR 199 (343)
Q Consensus 186 ~i~g~P~sf~~WYr 199 (343)
++-.+|++|++=|+
T Consensus 77 l~PlvPL~fv~~Yq 90 (131)
T PF10166_consen 77 LIPLVPLTFVLGYQ 90 (131)
T ss_pred hhhHHHHHHHHHHH
Confidence 35567999999885
No 15
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=52.57 E-value=30 Score=34.61 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019268 141 LQRLQYVAFATYLGLFLCLLWNIVAVTT 168 (343)
Q Consensus 141 ~Qr~Vk~~y~lWl~~~~~l~~N~~~~~~ 168 (343)
++....-.+..|+ .+.|+||...-++
T Consensus 91 F~cc~wngg~~w~--s~llf~~v~ipiL 116 (360)
T KOG3966|consen 91 FLCCLWNGGAMWI--SFLLFWQVCIPIL 116 (360)
T ss_pred HHHHHHhcchHHH--HHHHHHHHHHHHH
Confidence 5666666677777 4578899876543
No 16
>PRK10263 DNA translocase FtsK; Provisional
Probab=52.31 E-value=3.6e+02 Score=32.41 Aligned_cols=11 Identities=18% Similarity=0.284 Sum_probs=6.1
Q ss_pred CcccchhHHHH
Q 019268 273 GKSLTGVLPAV 283 (343)
Q Consensus 273 g~g~~G~i~ai 283 (343)
+-|..|.+.+-
T Consensus 142 gGGIIG~lLs~ 152 (1355)
T PRK10263 142 SGGVIGSLLST 152 (1355)
T ss_pred ccchHHHHHHH
Confidence 44666665543
No 17
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=52.13 E-value=4.7 Score=40.35 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhh
Q 019268 177 KIWFLAIIYFIAGVPGAYVLWYR 199 (343)
Q Consensus 177 ~~~~laily~i~g~P~sf~~WYr 199 (343)
+..|+.|+.+++++-++..+|++
T Consensus 103 Q~LF~Gi~~l~l~~lLaL~vW~Y 125 (381)
T PF05297_consen 103 QTLFVGIVILFLCCLLALGVWFY 125 (381)
T ss_dssp -----------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999986
No 18
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=51.98 E-value=1.5e+02 Score=27.45 Aligned_cols=33 Identities=27% Similarity=0.480 Sum_probs=19.6
Q ss_pred hhHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 019268 80 ADLKKKEKELQAKEAEL-----RRREQDVRRKEEAAAR 112 (343)
Q Consensus 80 ~dL~kKeeEL~rkEaEL-----~rRE~eL~~re~~~~~ 112 (343)
+|..|+-+.||+|.+|. +...+.+.|.|+.+++
T Consensus 41 a~vdK~sKKLE~~K~~~~~s~~k~~kkKieR~Ee~LK~ 78 (186)
T KOG3312|consen 41 AEVDKQSKKLEKKKEENGDSNDKSKKKKIERVEEKLKN 78 (186)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhc
Confidence 36677777888877765 1233445555555543
No 19
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=51.00 E-value=2.2e+02 Score=29.62 Aligned_cols=55 Identities=24% Similarity=0.419 Sum_probs=38.7
Q ss_pred CcccchhHHHHHhh------cCCceehHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCChH
Q 019268 273 GKSLTGVLPAVDVM------GDHALVGIFYFIGFGLFCLESLVSIWVIQ--QVYMYFRGSGKA 327 (343)
Q Consensus 273 g~g~~G~i~ai~~~------~~~~~vgi~~~i~~~lf~~~a~~s~~~l~--~V~~~yR~~G~s 327 (343)
|.+.||.++++..+ ++..-.+.++++.+.+..+.+++.-+++. ++++|||+.+.+
T Consensus 156 G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf~~yy~~~~~~ 218 (406)
T KOG1479|consen 156 GQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLPFVRYYREKAGS 218 (406)
T ss_pred cchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcchHHHHHhhhccc
Confidence 78999998887654 33345567777777777666666655554 489999887766
No 20
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=49.45 E-value=66 Score=26.95 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhhc---cCC-C--hhHH-HHHHHHHHhhhhhhhhhhhhhhhhhhcccCCCchhHH
Q 019268 157 LCLLWNIVAVTTAWI---KGE-G--VKIW-FLAIIYFIAGVPGAYVLWYRPLYRAFSFKRDCSDRVI 216 (343)
Q Consensus 157 ~~l~~N~~~~~~~~i---~g~-~--~~~~-~laily~i~g~P~sf~~WYrplY~A~~~~r~~~~~~~ 216 (343)
..+++=+++|++|++ +.. + ...| .+|++=|++|+-+-.-+--...|+ .|+|-+..+|.+
T Consensus 17 ~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSii~FIlG~vl~lGilifs~y~-~C~~~~~~~r~n 82 (91)
T PHA02680 17 CGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSVTCFIVGAVLLLGLFVFSMYR-KCSGSMPYERLN 82 (91)
T ss_pred HHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCceeeccc
Confidence 444555678888887 221 1 2233 677777777766655555556677 666766666666
No 21
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=47.77 E-value=44 Score=28.10 Aligned_cols=34 Identities=44% Similarity=0.579 Sum_probs=14.6
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 019268 81 DLKKKEKELQAKEAELRRREQDVRRKEEAAARAGI 115 (343)
Q Consensus 81 dL~kKeeEL~rkEaEL~rRE~eL~~re~~~~~~g~ 115 (343)
++.+++++|+.+++++.+++.....+ +.+...|.
T Consensus 50 e~~~~~~el~~~~~e~~~~e~~~~~~-~~l~e~GL 83 (125)
T PF14265_consen 50 ELEELEKELEELEAELARRELRSEAK-KVLAEKGL 83 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCC
Confidence 34444444444444444444333222 22445553
No 22
>COG3462 Predicted membrane protein [Function unknown]
Probab=44.75 E-value=1.6e+02 Score=25.72 Aligned_cols=30 Identities=7% Similarity=0.004 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 019268 294 IFYFIGFGLFCLESLVSIWVIQQVYMYFRG 323 (343)
Q Consensus 294 i~~~i~~~lf~~~a~~s~~~l~~V~~~yR~ 323 (343)
-+++|.-++|.+..++.++.+..++...|+
T Consensus 48 Gm~lImpI~~~vvli~lvvfm~~~~g~~r~ 77 (117)
T COG3462 48 GMWLIMPIFWAVVLIFLVVFMFYILGAVRR 77 (117)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466888889988888888888888887775
No 23
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=44.11 E-value=23 Score=36.76 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=18.9
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHH
Q 019268 79 AADLKKKEKELQAKEAELRRREQDV 103 (343)
Q Consensus 79 ~~dL~kKeeEL~rkEaEL~rRE~eL 103 (343)
.++++.|++||+..|++.++.|+||
T Consensus 394 ~~~~~AK~reL~eLeAq~~aL~AEL 418 (419)
T PF12737_consen 394 EAEREAKRRELEELEAQARALRAEL 418 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4677778888887777777777766
No 24
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.78 E-value=23 Score=28.71 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhcCCcccccC---cccchhHHHHHh
Q 019268 249 FFLFYLLHIGFCIFASVAPPIIFKG---KSLTGVLPAVDV 285 (343)
Q Consensus 249 ff~~~~~~i~f~i~~aiG~p~~f~g---~g~~G~i~ai~~ 285 (343)
|++.|.+.+++.+-|+||. |++. .|+||=|.++.+
T Consensus 4 ~lltFg~Fllvi~gMsiG~--I~krk~I~GSCGGi~alGi 41 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGY--IFKRKSIKGSCGGIAALGI 41 (77)
T ss_pred HHHHHHHHHHHHHHHhHhh--heeccccccccccHHhhcc
Confidence 4566666666778888884 4555 499998888765
No 25
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=43.41 E-value=24 Score=33.92 Aligned_cols=27 Identities=41% Similarity=0.727 Sum_probs=17.9
Q ss_pred hhHHHhHHHHHHHHHHHHH--HHHHHHHH
Q 019268 80 ADLKKKEKELQAKEAELRR--REQDVRRK 106 (343)
Q Consensus 80 ~dL~kKeeEL~rkEaEL~r--RE~eL~~r 106 (343)
+|+.+|-++|+.++.|-++ ||.|+++.
T Consensus 168 ae~erkRk~~e~r~~~eRkr~re~eIeae 196 (250)
T KOG1150|consen 168 AELERKRKELEARANEERKRQREEEIEAE 196 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5777787888877766544 55556544
No 26
>PHA03237 envelope glycoprotein M; Provisional
Probab=43.19 E-value=1.7e+02 Score=30.72 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=37.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCCccccc---C-cccchh-HHHHHhhcCCceehHHHHHHHHHHHHHHHHHHH
Q 019268 243 AMKFGWFFLFYLLHIGFCIFASVAPPIIFK---G-KSLTGV-LPAVDVMGDHALVGIFYFIGFGLFCLESLVSIW 312 (343)
Q Consensus 243 s~~f~~ff~~~~~~i~f~i~~aiG~p~~f~---g-~g~~G~-i~ai~~~~~~~~vgi~~~i~~~lf~~~a~~s~~ 312 (343)
.+.+++.++++++..+|.+..+|-+ .+ + .+..|. -.++.+++++. .+.+....+|++|+++.+.
T Consensus 95 ~~y~~~t~lv~la~aiY~i~gav~i---~r~~~~~~~~~~~~~~~~~lv~sp~---tlflg~l~~WtlQ~fVllL 163 (424)
T PHA03237 95 VAFFYYTTLVLVALACYLIVGAVII---RREARGCTAYAGCGAFVASLIASPA---TLLLGTLATWLLQAVVLLL 163 (424)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHH---HHhhcCcchhhhhHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHH
Confidence 4456666777778887777777654 33 2 333455 44456555543 2344445677777665443
No 27
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=41.90 E-value=2.8e+02 Score=29.02 Aligned_cols=74 Identities=19% Similarity=0.206 Sum_probs=53.3
Q ss_pred HHHHHHHHhhh-hhhhhhhhhhhhhhhcccCCCchhHHHHHHHHhHHHHHHhhccCCCCcCCccchhHHHHHHHHHHHHH
Q 019268 180 FLAIIYFIAGV-PGAYVLWYRPLYRAFSFKRDCSDRVIADQLALNLVSFLVFLSHYKPSCRTESAMKFGWFFLFYLLHIG 258 (343)
Q Consensus 180 ~laily~i~g~-P~sf~~WYrplY~A~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ss~~f~~ff~~~~~~i~ 258 (343)
+++.+|...+. .+.++.|+.-.+|.-. .+ +..+..+..||+++-+.+ +..+...-++....++.
T Consensus 70 G~~~~~~~~~~~~~~~~~~~~~~~rl~~--------~~---~~~~~~T~~d~l~~Rf~s----~~lr~l~ali~iv~~i~ 134 (493)
T COG0591 70 GLSGLWIAIGLLIGAFLLWLLFAPRLRR--------LA---KARGATTIPDFLEARFGS----KILRILSALIIIVFFIP 134 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH--------Hh---cccCCccHHHHHHHHcCC----hHHHHHHHHHHHHHHHH
Confidence 55666655554 6888899988888761 11 456788899999998776 55666667777778888
Q ss_pred HHHHhhcCCc
Q 019268 259 FCIFASVAPP 268 (343)
Q Consensus 259 f~i~~aiG~p 268 (343)
++..+.+|.-
T Consensus 135 yia~ql~~~~ 144 (493)
T COG0591 135 YIALQLVAGG 144 (493)
T ss_pred HHHHHHHHHH
Confidence 8888777754
No 28
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=41.15 E-value=67 Score=27.24 Aligned_cols=26 Identities=35% Similarity=0.262 Sum_probs=18.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019268 81 DLKKKEKELQAKEAELRRREQDVRRK 106 (343)
Q Consensus 81 dL~kKeeEL~rkEaEL~rRE~eL~~r 106 (343)
-+++|.++|+++-++|++.++.|+..
T Consensus 80 ~l~~~~~~l~~~i~~L~~~~~~L~~~ 105 (124)
T TIGR02051 80 LASRKLKSVQAKMADLLRIERLLEEL 105 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777666653
No 29
>PRK12705 hypothetical protein; Provisional
Probab=41.05 E-value=45 Score=35.52 Aligned_cols=18 Identities=33% Similarity=0.518 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 019268 85 KEKELQAKEAELRRREQD 102 (343)
Q Consensus 85 KeeEL~rkEaEL~rRE~e 102 (343)
|++.|++|.++|++||++
T Consensus 89 ~e~~l~~~~~~l~~~~~~ 106 (508)
T PRK12705 89 KEEQLDARAEKLDNLENQ 106 (508)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 30
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=39.68 E-value=3.9e+02 Score=26.55 Aligned_cols=71 Identities=13% Similarity=0.016 Sum_probs=45.2
Q ss_pred CCCCCCCCcceeecCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHhhhhhhhhhh
Q 019268 119 EKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLW 197 (343)
Q Consensus 119 ~nNWPPf~Pi~yhdI~~EIP~~~Qr~Vk~~y~lWl~~~~~l~~N~~~~~~~~i~g~~~~~~~laily~i~g~P~sf~~W 197 (343)
..-|||.++.- |-...--+++|++|..=..-.+..++++.+++.. .+.....|++-+.+.++-.-++|.+=
T Consensus 13 ~~~~~~~~~~~------~~~~~~~~~~~r~~~~r~~g~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~p~~a~~~~ 83 (366)
T PRK10245 13 HGEEPPLTPQN------EHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVS--HPPPGWWWLLLVGWAFVWPHLAWQIA 83 (366)
T ss_pred cccCCCCcchh------hhccccchhHHHHHHHHHHHHHHhHHHHHHHHHh--cccchHHHHHHHHHHHHhHHHHHHHH
Confidence 45688876541 2223345788999888776667777777776433 23333467787777777677776653
No 31
>PF14851 FAM176: FAM176 family
Probab=37.91 E-value=32 Score=31.18 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019268 86 EKELQAKEAELRRREQDVRR 105 (343)
Q Consensus 86 eeEL~rkEaEL~rRE~eL~~ 105 (343)
+|||+ +++.|++|||.++.
T Consensus 116 ae~~e-~A~rlEeRe~iirE 134 (153)
T PF14851_consen 116 AEELE-RAQRLEERERIIRE 134 (153)
T ss_pred HHHHH-HHHHHHHHHHHHHH
No 32
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=35.59 E-value=30 Score=39.45 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=11.8
Q ss_pred hHHHhHHHHHHHHH-HHHHHHHHHHHH
Q 019268 81 DLKKKEKELQAKEA-ELRRREQDVRRK 106 (343)
Q Consensus 81 dL~kKeeEL~rkEa-EL~rRE~eL~~r 106 (343)
|...+|+||..||. |.+-|||||+.|
T Consensus 715 ~~~~rErelrERE~Rere~reReLrdR 741 (982)
T PF03154_consen 715 DPAARERELREREIRERELRERELRDR 741 (982)
T ss_pred CHHhhhhhhhhhhhhhHHHHHHHHHHh
Confidence 45555555432221 122356666654
No 33
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=35.28 E-value=68 Score=25.78 Aligned_cols=37 Identities=30% Similarity=0.404 Sum_probs=20.2
Q ss_pred hhHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCC
Q 019268 80 ADLKKKEKELQAKEAELRRREQ--DVRRKEEAAARAGIV 116 (343)
Q Consensus 80 ~dL~kKeeEL~rkEaEL~rRE~--eL~~re~~~~~~g~~ 116 (343)
++|.+..++|++..++++++|+ -+..-.+.++..|+.
T Consensus 1 ~eL~~~~~~l~~~~~~~~~~e~~~~~~~i~~~~~~~Gis 39 (93)
T PF00816_consen 1 KELEAQIKELEKEIEERRKQEREEAIAEIRELMAEYGIS 39 (93)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTT--
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3677777888766666655333 244433445566654
No 34
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=34.52 E-value=29 Score=38.26 Aligned_cols=18 Identities=50% Similarity=0.715 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019268 89 LQAKEAELRRREQDVRRK 106 (343)
Q Consensus 89 L~rkEaEL~rRE~eL~~r 106 (343)
|+-||.||.+||+.|.+|
T Consensus 451 LelkEkElaerEq~l~rr 468 (904)
T KOG4721|consen 451 LELKEKELAEREQALERR 468 (904)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 444444555555444444
No 35
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.09 E-value=1.1e+02 Score=34.83 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=12.8
Q ss_pred hHHHhHHHHHHHHHHHHH
Q 019268 81 DLKKKEKELQAKEAELRR 98 (343)
Q Consensus 81 dL~kKeeEL~rkEaEL~r 98 (343)
|..+-+|+|.|||.|+++
T Consensus 1106 et~rlre~L~rke~E~Qa 1123 (1226)
T KOG4279|consen 1106 ETERLREILDRKEREYQA 1123 (1226)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456666778888877766
No 36
>COG1422 Predicted membrane protein [Function unknown]
Probab=32.88 E-value=3.9e+02 Score=25.44 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=5.6
Q ss_pred hhhhhhhhhhh
Q 019268 189 GVPGAYVLWYR 199 (343)
Q Consensus 189 g~P~sf~~WYr 199 (343)
++-..++.||-
T Consensus 171 ~~~~gWi~WYf 181 (201)
T COG1422 171 GDFLGWIGWYF 181 (201)
T ss_pred ccchHHHHHHH
Confidence 33345566664
No 37
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=32.69 E-value=79 Score=32.05 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=15.7
Q ss_pred chhhHHHhHHHHHHHHHHHHHHHHHH
Q 019268 78 TAADLKKKEKELQAKEAELRRREQDV 103 (343)
Q Consensus 78 ~~~dL~kKeeEL~rkEaEL~rRE~eL 103 (343)
++.+-.++.+|++|..+|.++||.+-
T Consensus 116 r~~~er~~~re~~r~~~e~eeRekre 141 (378)
T KOG1996|consen 116 RQRDERKQRRETAREVAEIEEREKRE 141 (378)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556667777776776666543
No 38
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=32.54 E-value=59 Score=27.33 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=21.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 019268 83 KKKEKELQAKEAELRRREQDVRRKEE 108 (343)
Q Consensus 83 ~kKeeEL~rkEaEL~rRE~eL~~re~ 108 (343)
.+.+.|++.++++|+.+++++.+++.
T Consensus 45 ek~~~e~~~~~~el~~~~~e~~~~e~ 70 (125)
T PF14265_consen 45 EKAQEELEELEKELEELEAELARREL 70 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999998887664
No 39
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=32.06 E-value=5.5e+02 Score=25.92 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=9.5
Q ss_pred HHHHHHhhhhhhhhhhhhh
Q 019268 182 AIIYFIAGVPGAYVLWYRP 200 (343)
Q Consensus 182 aily~i~g~P~sf~~WYrp 200 (343)
|++...+.+|+...- |.+
T Consensus 140 Aaila~iviP~~~~y-~ln 157 (299)
T PF05884_consen 140 AAILAYIVIPLIAYY-YLN 157 (299)
T ss_pred HHHHHHHHHHHHHHh-hcc
Confidence 444445666765444 444
No 40
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=31.92 E-value=1e+02 Score=25.04 Aligned_cols=12 Identities=50% Similarity=0.678 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 019268 87 KELQAKEAELRR 98 (343)
Q Consensus 87 eEL~rkEaEL~r 98 (343)
+||++.|+||++
T Consensus 14 ~eiqkle~ELq~ 25 (76)
T PF07334_consen 14 EEIQKLEAELQQ 25 (76)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 41
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=30.65 E-value=79 Score=27.18 Aligned_cols=23 Identities=13% Similarity=0.489 Sum_probs=15.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 019268 83 KKKEKELQAKEAELRRREQDVRR 105 (343)
Q Consensus 83 ~kKeeEL~rkEaEL~rRE~eL~~ 105 (343)
..++++.+.+++++.+||.||+.
T Consensus 66 ~e~q~ki~~~~~kV~ere~eL~e 88 (115)
T PF06476_consen 66 AERQQKIAEKQQKVAEREAELKE 88 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777777777764
No 42
>PRK10263 DNA translocase FtsK; Provisional
Probab=30.61 E-value=1.8e+02 Score=34.80 Aligned_cols=13 Identities=38% Similarity=1.022 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhhh
Q 019268 178 IWFLAIIYFIAGV 190 (343)
Q Consensus 178 ~~~laily~i~g~ 190 (343)
.|+-.+++.++|+
T Consensus 69 A~LAD~L~~LFGl 81 (1355)
T PRK10263 69 AWLADTLFFIFGV 81 (1355)
T ss_pred HHHHHHHHHHHhH
Confidence 3444455555554
No 43
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=30.45 E-value=2.1e+02 Score=30.07 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 019268 144 LQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAF 205 (343)
Q Consensus 144 ~Vk~~y~lWl~~~~~l~~N~~~~~~~~i~g~~~~~~~laily~i~g~P~sf~~WYrplY~A~ 205 (343)
.-|++|..|+.. ..+.+.+.- .+......-+-|+.-|.|+...+=|+-+||-+
T Consensus 30 ~tRl~ya~~l~l--~~~vs~i~~-------~~~~~~l~k~p~~c~~~~c~~~~gy~AVyR~~ 82 (426)
T KOG2592|consen 30 VTRLIYAFILLL--GTLVSWIML-------PGAEKQLNKLPWFCEGNDCGKLLGYKAVYRLC 82 (426)
T ss_pred HHHHHHHHHHHH--HHHHHHHhh-------hhHHHHHhhCCccccCCCcccchhhhHHHHHH
Confidence 357788777643 222232221 22333333333433334666666777777755
No 44
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=30.05 E-value=3.6e+02 Score=23.28 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhcCCcccccCcccchhHHHHHhhcCCceehHHHHHHHHHHHHHHHHHHHHH
Q 019268 249 FFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVI 314 (343)
Q Consensus 249 ff~~~~~~i~f~i~~aiG~p~~f~g~g~~G~i~ai~~~~~~~~vgi~~~i~~~lf~~~a~~s~~~l 314 (343)
-+-.|..|.+.+...+-|. |.|.-| +.......++..+.|.++.+++.+-+
T Consensus 94 aLT~Yi~qsii~~~lf~~~-----~l~l~~----------~~~~~~~~~~~~~i~~~q~~~s~~W~ 144 (163)
T PF04235_consen 94 ALTNYILQSIIGTLLFYGY-----GLGLFG----------HLSPAQSLLIALGIWVVQLLFSYLWL 144 (163)
T ss_pred HHHHHHHHHHHHHHHHHhh-----cccccc----------cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888988777655332 112111 12223455666777778877776655
No 45
>COG5523 Predicted integral membrane protein [Function unknown]
Probab=29.82 E-value=5.7e+02 Score=25.44 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccccCcccchhHHHHHhhcCCceehHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 019268 246 FGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIG--FGLFCLESLVSIWVIQQVYMYF 321 (343)
Q Consensus 246 f~~ff~~~~~~i~f~i~~aiG~p~~f~g~g~~G~i~ai~~~~~~~~vgi~~~i~--~~lf~~~a~~s~~~l~~V~~~y 321 (343)
+..+.+..++.+.+++.+.+++-+++-+.+.+=++.+++..+. ...-.+|+.+ .++|.+--......-.+.|..|
T Consensus 91 lvl~lli~iF~flWSli~~~pi~i~~ys~s~~~~~~~~s~~d~-~i~~~lm~~gl~~ig~~i~ii~~~i~~~~~y~ay 167 (271)
T COG5523 91 LVLYLLIKIFRFLWSLIAFVPIFIIFYSGSASKIILNLSASDV-VIEVALMLFGLRLIGLLILIILGYIASLAYYMAY 167 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhHHHhhcccccch-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777788889999999887655444333333333443222 2223455555 4455544444444444555555
No 46
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=29.60 E-value=1.1e+02 Score=23.56 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019268 88 ELQAKEAELRRREQDVRRKEE 108 (343)
Q Consensus 88 EL~rkEaEL~rRE~eL~~re~ 108 (343)
-|+..|++|+.-|++++.-|.
T Consensus 33 RLa~LE~rL~~ae~ra~~ae~ 53 (60)
T PF11471_consen 33 RLAALEQRLQAAEQRAQAAEA 53 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554443
No 47
>PRK11098 microcin B17 transporter; Reviewed
Probab=29.14 E-value=2.6e+02 Score=29.14 Aligned_cols=65 Identities=25% Similarity=0.577 Sum_probs=37.2
Q ss_pred CccchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhc--cCCChhHH-------HHHHHHHHhhhhhhhhhhhhhhh
Q 019268 135 NEIPIHLQRLQ---YVAFATYLGLFLCLLWNIVAVTTAWI--KGEGVKIW-------FLAIIYFIAGVPGAYVLWYRPLY 202 (343)
Q Consensus 135 ~EIP~~~Qr~V---k~~y~lWl~~~~~l~~N~~~~~~~~i--~g~~~~~~-------~laily~i~g~P~sf~~WYrplY 202 (343)
++.|...-++. .++||.|...|..++ + ..|. +.++.+.| .+.+.++..++-...--||++.|
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~s~~~w~~w~lLg~~~il~l~l~~v~l~V~~n~w~~~Fy 119 (409)
T PRK11098 46 GQLPIGAARFWSPDFLWFYAYYLVCVGLF----A--GFWFIYSPHPWQRWSILGSALIIFVTWFLVQVSVAVNAWYAPFY 119 (409)
T ss_pred cCCCcchhHhcCchHHHHHHHHHHHHHHH----h--hhhcccCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 45565555444 366777776555442 2 1232 32333333 23344555666677778999999
Q ss_pred hhh
Q 019268 203 RAF 205 (343)
Q Consensus 203 ~A~ 205 (343)
+|.
T Consensus 120 daL 122 (409)
T PRK11098 120 DLI 122 (409)
T ss_pred HHH
Confidence 999
No 48
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=29.08 E-value=4.4e+02 Score=23.91 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=25.4
Q ss_pred HcCCCCCCCCCC--CC-CcceeecCCCccchhhHHHHH
Q 019268 112 RAGIVLEEKNWP--PF-FPIIHHDIANEIPIHLQRLQY 146 (343)
Q Consensus 112 ~~g~~~~~nNWP--Pf-~Pi~yhdI~~EIP~~~Qr~Vk 146 (343)
+.|||+-+++.| |+ +--+-.||.+|-..-.+...+
T Consensus 2 ~~NwPp~~~~~~~~P~~y~di~~eIP~~~q~~v~~~y~ 39 (177)
T PF04144_consen 2 ENNWPPFPKFCCIKPCFYHDISEEIPEEFQRLVKRAYY 39 (177)
T ss_pred CCCCCCCccccCCCCeEEeCHhHhCCHHHHHHHHHHHH
Confidence 358988878888 96 567889999888666555443
No 49
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=28.30 E-value=1.4e+02 Score=24.84 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=9.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 019268 82 LKKKEKELQAKEAELRRREQDVR 104 (343)
Q Consensus 82 L~kKeeEL~rkEaEL~rRE~eL~ 104 (343)
|..|-+|.+++++.++.++.+|.
T Consensus 16 l~~kr~e~~~~~~~~~~~e~~L~ 38 (126)
T PF13863_consen 16 LDTKREEIERREEQLKQREEELE 38 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 50
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=28.24 E-value=4.4e+02 Score=23.60 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=12.6
Q ss_pred cchhHHHHHhhcCCce
Q 019268 276 LTGVLPAVDVMGDHAL 291 (343)
Q Consensus 276 ~~G~i~ai~~~~~~~~ 291 (343)
..|++.-.+.+.++.+
T Consensus 77 gVGim~~~~ll~~~~~ 92 (141)
T PRK04125 77 GISVINSLGVMSQYPV 92 (141)
T ss_pred HhHHHHhHHHHHHHHH
Confidence 5799999999887654
No 51
>PF00146 NADHdh: NADH dehydrogenase; InterPro: IPR001694 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents subunit 1 NADH:ubiquinone oxidoreductase [, ]. Among the many polypeptide subunits that make up complex I, there are fifteen which are located in the membrane part, seven of which are encoded by the mitochondrial and chloroplast genomes of most species. The most conserved of these organelle-encoded subunits is known as subunit 1 (gene ND1 in mitochondrion, and NDH1 in chloroplast) and seems to contain the ubiquinone binding site. The ND1 subunit is highly similar to subunit 4 of Escherichia coli formate hydrogenlyase (gene hycD), subunit C of hydrogenase-4 (gene hyfC). Paracoccus denitrificans NQO8 and Escherichia coli nuoH NADH-ubiquinone oxidoreductase subunits also belong to this family []. This entry also includes the archaeal F420H2 oxidoreductase subunit H (FPO). FPO shuttles electrons from F420H2, via FAD and iron-sulphur (Fe-S) centres, to quinones in the F420H2:heterodisulphide oxidoreduction chain. The immediate electron acceptor for the enzyme in this species is believed to be methanophenazine. Couples the redox reaction to proton translocation (for every two electrons transferred, 0.9 hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=27.43 E-value=3e+02 Score=26.98 Aligned_cols=26 Identities=27% Similarity=0.611 Sum_probs=17.8
Q ss_pred HHHhhccCCCCcCCccchhHHHHHHH
Q 019268 227 FLVFLSHYKPSCRTESAMKFGWFFLF 252 (343)
Q Consensus 227 ~~~~~~~~~~~~r~~ss~~f~~ff~~ 252 (343)
+..+.|...|-.|-|..+++.|-.+.
T Consensus 271 ~~~~ir~~~pR~R~d~~~~~~W~~~l 296 (311)
T PF00146_consen 271 IFVWIRASFPRFRYDQLMRFCWKILL 296 (311)
T ss_pred HHHHHHhhhccccchhhHHhHHHHHH
Confidence 33444555555599999999997653
No 52
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=27.22 E-value=1.1e+02 Score=27.00 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=10.8
Q ss_pred hhHHHhHHHHHHHHHHHHH
Q 019268 80 ADLKKKEKELQAKEAELRR 98 (343)
Q Consensus 80 ~dL~kKeeEL~rkEaEL~r 98 (343)
++.+++++|++++.+++++
T Consensus 43 ~~~~~~~~~~~~~~~~l~~ 61 (168)
T PF01956_consen 43 DKYQKRMKEFQKRYRELRK 61 (168)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666644
No 53
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=27.15 E-value=5.1e+02 Score=26.76 Aligned_cols=139 Identities=18% Similarity=0.252 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccCCCchhHHHHHHHHhHH
Q 019268 146 YVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFSFKRDCSDRVIADQLALNLV 225 (343)
Q Consensus 146 k~~y~lWl~~~~~l~~N~~~~~~~~i~g~~~~~~~laily~i~g~P~sf~~WYrplY~A~~~~r~~~~~~~~~~~~~~~~ 225 (343)
+..+.+|...++|.++=++..++..|... +--+|.||-|- +. .|=..+|++
T Consensus 8 ~~~~r~W~~~v~~~~l~~v~~~v~liaA~----------fp~~GfPC~y~--------~v-----------VDY~~~N~t 58 (374)
T PF01528_consen 8 RINWRIWLVQVACFVLMFVNSLVTLIAAS----------FPGLGFPCFYA--------AV-----------VDYSALNLT 58 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCCCCCeecc--------cc-----------ccchhcCCc
Confidence 56678898888888777776654443211 11246676542 22 122233443
Q ss_pred HHHHhhccCCCCcC---CccchhHHHHHHHHHHHHHHHHHhhcCCccccc--CcccchhHHHHHhhcCCceehHHHHHHH
Q 019268 226 SFLVFLSHYKPSCR---TESAMKFGWFFLFYLLHIGFCIFASVAPPIIFK--GKSLTGVLPAVDVMGDHALVGIFYFIGF 300 (343)
Q Consensus 226 ~~~~~~~~~~~~~r---~~ss~~f~~ff~~~~~~i~f~i~~aiG~p~~f~--g~g~~G~i~ai~~~~~~~~vgi~~~i~~ 300 (343)
. ..-..|--|.-- .+--+.+++.++++++..+|.+..+|-+---=+ +.+..+.-.-|+.++++. .+.+...
T Consensus 59 ~-~n~~~~ltP~LFLe~~~~~~yv~~t~~v~l~~~iYyi~~av~i~~~~~~~~~~~~~~~~~i~~vg~~~---tlfl~~l 134 (374)
T PF01528_consen 59 A-RNVMGHLTPTLFLEAPEMVFYVYFTFIVFLAVAIYYIVGAVIIYRRKKGHAYGLNQLSRWISLVGSPT---TLFLGIL 134 (374)
T ss_pred h-hhccCCCCCceeccCCeeeeehHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHhcChh---HHHHHHH
Confidence 1 112222223222 233445666777888888888877775421101 122233333344555554 2344555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019268 301 GLFCLESLVSIWVIQQV 317 (343)
Q Consensus 301 ~lf~~~a~~s~~~l~~V 317 (343)
.+|++|++..+.-.|.+
T Consensus 135 ~mWtlQlfvl~LS~K~~ 151 (374)
T PF01528_consen 135 CMWTLQLFVLLLSYKLI 151 (374)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777776655544443
No 54
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.76 E-value=1.1e+02 Score=27.59 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=14.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 019268 82 LKKKEKELQAKEAELRRREQDVRR 105 (343)
Q Consensus 82 L~kKeeEL~rkEaEL~rRE~eL~~ 105 (343)
.++.++|+++.++||++.|.|+..
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~ 179 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEA 179 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666544
No 55
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=26.58 E-value=5.5e+02 Score=24.20 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhhhh-hhhhhhhhhhhh
Q 019268 179 WFLAIIYFIAGVPGA-YVLWYRPLYRAF 205 (343)
Q Consensus 179 ~~laily~i~g~P~s-f~~WYrplY~A~ 205 (343)
+.+.+.++++.++.. .-..+|..++..
T Consensus 132 l~~~i~~~v~~i~~i~~~~~~~K~~k~i 159 (248)
T PF11368_consen 132 LFIIIPFLVLLILTIILQKFLRKTIKKI 159 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444332 335678888888
No 56
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=26.23 E-value=1.6e+02 Score=25.06 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=14.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 019268 82 LKKKEKELQAKEAELRRREQDVRR 105 (343)
Q Consensus 82 L~kKeeEL~rkEaEL~rRE~eL~~ 105 (343)
++++.++|+++-+||++..+.|..
T Consensus 84 l~~~~~~l~~~i~~L~~~~~~L~~ 107 (127)
T TIGR02047 84 LDEHISHVRARIIKLQALIEQLVD 107 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555554
No 57
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=26.01 E-value=7.2e+02 Score=25.37 Aligned_cols=48 Identities=19% Similarity=0.363 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHH-hhhccCCC-hhHHHHHHHHHHhhhhhhhhhhhhhh
Q 019268 151 TYLGLFLCLLWNIVAVT-TAWIKGEG-VKIWFLAIIYFIAGVPGAYVLWYRPL 201 (343)
Q Consensus 151 lWl~~~~~l~~N~~~~~-~~~i~g~~-~~~~~laily~i~g~P~sf~~WYrpl 201 (343)
-|++.+..++..++-++ +....+.| ++..++.++-++ -+...+|.||-
T Consensus 298 ~~~f~~~~~~~~~~~~~~ig~~q~~g~~Qv~~llv~e~~---~l~~~~~~~Py 347 (438)
T PF06011_consen 298 RWWFFIVWLLYKFLRGIFIGFLQGSGIAQVIALLVIEVI---YLILLFILRPY 347 (438)
T ss_pred hhhhHHHHHHHHHHHHHheeeeccCcHHHHHHHHHHHHH---HHHHHHHhChh
Confidence 35666677777776442 22223334 354444444432 24557899993
No 58
>PRK10780 periplasmic chaperone; Provisional
Probab=26.00 E-value=1.4e+02 Score=26.41 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=6.7
Q ss_pred HHHhHHHHHHHHHHH
Q 019268 82 LKKKEKELQAKEAEL 96 (343)
Q Consensus 82 L~kKeeEL~rkEaEL 96 (343)
..++++||.++++++
T Consensus 85 ~~~~~~el~~~~~~~ 99 (165)
T PRK10780 85 RTKLEKDVMAQRQTF 99 (165)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 59
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=25.89 E-value=1.5e+02 Score=23.84 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=14.9
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHH
Q 019268 80 ADLKKKEKELQAKEAELRRREQDVR 104 (343)
Q Consensus 80 ~dL~kKeeEL~rkEaEL~rRE~eL~ 104 (343)
++..++-+||.++.+.|++|=+-|.
T Consensus 38 ~~d~~~L~~L~~~a~rm~eRI~tLE 62 (75)
T TIGR02976 38 TDDQALLQELYAKADRLEERIDTLE 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666777766666665544444
No 60
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=25.80 E-value=2.6e+02 Score=24.27 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHhhhhhhh
Q 019268 154 GLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAY 194 (343)
Q Consensus 154 ~~~~~l~~N~~~~~~~~i~g~~~~~~~laily~i~g~P~sf 194 (343)
..++.+++.+++|.+ .+...-.+..++|.+.=+|...
T Consensus 7 ~~aiG~lL~IL~CAL----~~nw~PL~v~~~y~laPiP~~i 43 (120)
T PF04133_consen 7 FLAIGFLLVILSCAL----YKNWWPLFVVLFYVLAPIPNLI 43 (120)
T ss_pred HHHHHHHHHHHHHHH----hcccHHHHHHHHHHHHhhhHHH
Confidence 356778888888854 2223345667778777666543
No 61
>PF05178 Kri1: KRI1-like family; InterPro: IPR018034 The Kri1 protein is also known as KRR1-interacting protein 1. The Saccharomyces cerevisiae member of this family is found to be required for the assembly of preribosomal 40S subunits in the nucleolus []. KRR1 is highly expressed in dividing cells and its expression ceases almost completely when cells enter the stationary phase.
Probab=25.76 E-value=86 Score=26.39 Aligned_cols=15 Identities=60% Similarity=0.815 Sum_probs=9.7
Q ss_pred HhHHHHHHHHHHHHH
Q 019268 84 KKEKELQAKEAELRR 98 (343)
Q Consensus 84 kKeeEL~rkEaEL~r 98 (343)
||++|-++|++||+|
T Consensus 3 RK~~Ek~~k~eElkr 17 (101)
T PF05178_consen 3 RKEEEKQEKEEELKR 17 (101)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666667777764
No 62
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.58 E-value=92 Score=23.18 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=12.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 019268 83 KKKEKELQAKEAELRRREQDVR 104 (343)
Q Consensus 83 ~kKeeEL~rkEaEL~rRE~eL~ 104 (343)
.+...++.+.++|+++.|+|++
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666665554
No 63
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=24.95 E-value=1.4e+02 Score=23.84 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=24.1
Q ss_pred HHHhhcCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 019268 282 AVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARG 337 (343)
Q Consensus 282 ai~~~~~~~~vgi~~~i~~~lf~~~a~~s~~~l~~V~~~yR~~G~s~~ak~e~a~g 337 (343)
.++.++...+. .+.+|+.++|++-..+.=++.| -.+-|||+|+|
T Consensus 24 lld~~sp~qW~-aIGvi~gi~~~~lt~ltN~YFK-----------~k~drr~~a~g 67 (68)
T PF04971_consen 24 LLDQFSPSQWA-AIGVIGGIFFGLLTYLTNLYFK-----------IKEDRRKAARG 67 (68)
T ss_pred HHhccCcccch-hHHHHHHHHHHHHHHHhHhhhh-----------hhHhhhHhhcC
Confidence 45555544433 4455666677766666544432 23556777765
No 64
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.89 E-value=3.7e+02 Score=32.37 Aligned_cols=25 Identities=24% Similarity=0.105 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 019268 139 IHLQRLQYVAFATYLGLFLCLLWNI 163 (343)
Q Consensus 139 ~~~Qr~Vk~~y~lWl~~~~~l~~N~ 163 (343)
...|.++..++..+|..++....|.
T Consensus 1147 ~~~q~lqn~m~a~yma~v~~~~~~~ 1171 (1391)
T KOG0065|consen 1147 HNVQGLQNAMGAAYMATVFSGPNNN 1171 (1391)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhhhh
Confidence 6678888888888885544444333
No 65
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=24.77 E-value=55 Score=37.48 Aligned_cols=15 Identities=47% Similarity=0.510 Sum_probs=7.7
Q ss_pred HHHhHHHH---HHHHHHH
Q 019268 82 LKKKEKEL---QAKEAEL 96 (343)
Q Consensus 82 L~kKeeEL---~rkEaEL 96 (343)
|.||.+|+ .|||+|.
T Consensus 580 LAkKRee~~ek~RReaEq 597 (982)
T PF03154_consen 580 LAKKREERVEKARREAEQ 597 (982)
T ss_pred HhhhhHHHHHHHHhhhhc
Confidence 44444443 4556665
No 66
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=24.68 E-value=2.2e+02 Score=21.31 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=22.1
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019268 135 NEIPIHLQRLQYVAFATYLGLFLCLLWNIVAV 166 (343)
Q Consensus 135 ~EIP~~~Qr~Vk~~y~lWl~~~~~l~~N~~~~ 166 (343)
.|+|++.++-..-+|.-+....+||++=++.+
T Consensus 18 iev~~qa~qnlqelfvnfclilicllli~iiv 49 (52)
T PF04272_consen 18 IEVPQQARQNLQELFVNFCLILICLLLICIIV 49 (52)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888887767777777776777776554443
No 67
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=24.38 E-value=1.3e+02 Score=22.03 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=13.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 019268 82 LKKKEKELQAKEAELRRREQDVR 104 (343)
Q Consensus 82 L~kKeeEL~rkEaEL~rRE~eL~ 104 (343)
+.+|-++++++-++|++.+++|+
T Consensus 41 l~~~~~~i~~~i~~L~~~~~~L~ 63 (65)
T PF09278_consen 41 LEEKLEEIEEQIAELQALRAQLE 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666665555544
No 68
>COG4652 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.19 E-value=9.8e+02 Score=26.74 Aligned_cols=36 Identities=8% Similarity=0.020 Sum_probs=20.8
Q ss_pred cCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 019268 287 GDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFR 322 (343)
Q Consensus 287 ~~~~~vgi~~~i~~~lf~~~a~~s~~~l~~V~~~yR 322 (343)
+.+...=.+|+++.++=++..+..+..+.+.+..|+
T Consensus 275 KgK~~~K~~m~l~~v~k~v~~liv~s~l~~~l~~~~ 310 (657)
T COG4652 275 KGKLPFKRSMFLLTVCKLVAVLIVVSSLAQNLYFYT 310 (657)
T ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334444456666666666666655666666666664
No 69
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=24.08 E-value=2.7e+02 Score=25.67 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=12.9
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 019268 81 DLKKKEKELQAKEAELRRREQDVRRKE 107 (343)
Q Consensus 81 dL~kKeeEL~rkEaEL~rRE~eL~~re 107 (343)
|-++-.+||.+-|+|+....+-|..+|
T Consensus 30 E~eeLr~EL~KvEeEI~TLrqvL~aKe 56 (162)
T PF04201_consen 30 EREELRSELAKVEEEIQTLRQVLAAKE 56 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566666666544333343333
No 70
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=23.43 E-value=4e+02 Score=21.47 Aligned_cols=29 Identities=14% Similarity=0.286 Sum_probs=18.8
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 019268 79 AADLKKKEKELQAKEAELRRREQDVRRKE 107 (343)
Q Consensus 79 ~~dL~kKeeEL~rkEaEL~rRE~eL~~re 107 (343)
.+|.++-++.|+.-|+.++.-..|+.+|.
T Consensus 11 ~~~~~~i~~rLd~iEeKvEf~~~Ei~Qr~ 39 (70)
T PF04210_consen 11 PDDFNEIMKRLDEIEEKVEFTNAEIAQRA 39 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34566666667777777777777776553
No 71
>COG3671 Predicted membrane protein [Function unknown]
Probab=23.32 E-value=2.6e+02 Score=24.77 Aligned_cols=57 Identities=19% Similarity=0.402 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCC---------hhHHHHHHHHHHhhhhhhhh
Q 019268 139 IHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIK---GEG---------VKIWFLAIIYFIAGVPGAYV 195 (343)
Q Consensus 139 ~~~Qr~Vk~~y~lWl~~~~~l~~N~~~~~~~~i~---g~~---------~~~~~laily~i~g~P~sf~ 195 (343)
++-+++.-..|.++++..++.+.-+++++++.+. +++ ...|-+++++.++|.-..++
T Consensus 18 ~~~k~l~~vvY~Ly~~G~v~git~lvgvi~AYv~rd~~~~~~~SHy~f~iRTFw~~vl~~iIg~Llt~l 86 (125)
T COG3671 18 ESGKKLPIVVYILYLLGAVTGITPLVGVIFAYVNRDKADSIAASHYEFLIRTFWLAVLWWIIGLLLTFL 86 (125)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888999998888888888888888762 222 24566777776665544443
No 72
>COG5346 Predicted membrane protein [Function unknown]
Probab=23.05 E-value=5.5e+02 Score=22.98 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHH
Q 019268 153 LGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFI 187 (343)
Q Consensus 153 l~~~~~l~~N~~~~~~~~i~g~~~~~~~laily~i 187 (343)
+.+.++|+|-+.-.+++...|+ +.+.+|..|++
T Consensus 95 liFgi~LVvsi~~~tla~~~~G--tv~alAlaFv~ 127 (136)
T COG5346 95 LIFGIFLVVSIFPKTLASLAGG--TVFALALAFVI 127 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHH
Confidence 3355666666665555544443 34677776644
No 73
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=22.98 E-value=1.4e+02 Score=25.69 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=11.3
Q ss_pred hhHHHhHHHHHHHHHHHHH
Q 019268 80 ADLKKKEKELQAKEAELRR 98 (343)
Q Consensus 80 ~dL~kKeeEL~rkEaEL~r 98 (343)
++..++++||++++++|++
T Consensus 76 ~~~~~~~~~l~~~~~~l~~ 94 (158)
T PF03938_consen 76 EERQKRQQELQQKEQELQQ 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666644
No 74
>COG1008 NuoM NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]
Probab=22.94 E-value=2.9e+02 Score=29.72 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=32.0
Q ss_pred HHHHhhcCCcccccCcccchhHHHHHh----hcCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019268 259 FCIFASVAPPIIFKGKSLTGVLPAVDV----MGDHALVGIFYFIGFGLFCLESLVSIWVIQQVY 318 (343)
Q Consensus 259 f~i~~aiG~p~~f~g~g~~G~i~ai~~----~~~~~~vgi~~~i~~~lf~~~a~~s~~~l~~V~ 318 (343)
++..+.+|.| |.+|++-=.-+ +..+.+++ ++.+..-.+.++.++|+++||+
T Consensus 377 ~~~mAs~glP------G~sgFvgEFlil~G~f~~~~~~~---~la~~g~iltA~Y~L~~~~rv~ 431 (497)
T COG1008 377 LFAMASLGLP------GTSGFVGEFLILLGSFQVFPWVA---FLAAFGLILTAVYMLWMYQRVF 431 (497)
T ss_pred HHHHHhcCCC------ccchHHHHHHHHhhhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999 45565544433 33344333 3444444567888999999886
No 75
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=22.80 E-value=2.6e+02 Score=25.01 Aligned_cols=20 Identities=25% Similarity=0.592 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHhhhhhhhhh
Q 019268 177 KIWFLAIIYFIAGVPGAYVL 196 (343)
Q Consensus 177 ~~~~laily~i~g~P~sf~~ 196 (343)
..|+++.-.+|+|+|+++-+
T Consensus 93 a~Wi~tTSallLgvPl~l~i 112 (137)
T PF04281_consen 93 ALWIVTTSALLLGVPLALEI 112 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46888888899999998854
No 76
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=22.71 E-value=1.6e+02 Score=25.26 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=16.5
Q ss_pred cchhhHHHhHHHHHHHHHHHHH
Q 019268 77 DTAADLKKKEKELQAKEAELRR 98 (343)
Q Consensus 77 ~~~~dL~kKeeEL~rkEaEL~r 98 (343)
..+....+++.++..|++||++
T Consensus 67 e~q~ki~~~~~kV~ere~eL~e 88 (115)
T PF06476_consen 67 ERQQKIAEKQQKVAEREAELKE 88 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888854
No 77
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=22.41 E-value=82 Score=32.84 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019268 86 EKELQAKEAELRRREQDVRRKEE 108 (343)
Q Consensus 86 eeEL~rkEaEL~rRE~eL~~re~ 108 (343)
++|+++|.+||+..|++.++.+.
T Consensus 394 ~~~~~AK~reL~eLeAq~~aL~A 416 (419)
T PF12737_consen 394 EAEREAKRRELEELEAQARALRA 416 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999988888777554
No 78
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=22.30 E-value=1.1e+02 Score=29.61 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 019268 85 KEKELQAKEAELRRREQDVR 104 (343)
Q Consensus 85 KeeEL~rkEaEL~rRE~eL~ 104 (343)
|-+||++|-+||++-.+||+
T Consensus 19 kvreleakveelnkereelk 38 (347)
T PF06673_consen 19 KVRELEAKVEELNKEREELK 38 (347)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 55688888888876334454
No 79
>COG3029 FrdC Fumarate reductase subunit C [Energy production and conversion]
Probab=22.27 E-value=4.3e+02 Score=23.49 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019268 297 FIGFGLFCLESLVSIWVIQQVY 318 (343)
Q Consensus 297 ~i~~~lf~~~a~~s~~~l~~V~ 318 (343)
.|..++|++.++.|++++.-++
T Consensus 107 ~i~~alwavtavvSvIil~vvl 128 (129)
T COG3029 107 PIIKALWAVTAVVSVIILVVVL 128 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4566778888888777775543
No 80
>KOG4193 consensus G protein-coupled receptors [Signal transduction mechanisms]
Probab=22.16 E-value=1.1e+03 Score=26.00 Aligned_cols=30 Identities=3% Similarity=-0.039 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 019268 295 FYFIGFGLFCLESLVSIWVIQQVYMYFRGS 324 (343)
Q Consensus 295 ~~~i~~~lf~~~a~~s~~~l~~V~~~yR~~ 324 (343)
++-=+.+++++..++.+++++|+...-...
T Consensus 474 F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~ 503 (610)
T KOG4193|consen 474 FLGPVTLIILVNIVMFVVTLKKLLRRLSKL 503 (610)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 444455666777777777776665544433
No 81
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=22.14 E-value=75 Score=30.34 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=13.4
Q ss_pred chhhHHHhHHHHHHHHHHHHHHHHHH
Q 019268 78 TAADLKKKEKELQAKEAELRRREQDV 103 (343)
Q Consensus 78 ~~~dL~kKeeEL~rkEaEL~rRE~eL 103 (343)
+.++-+..-++|..||.||.|.-.+|
T Consensus 8 s~eew~~Ar~~LL~~EKeltR~~dal 33 (211)
T PF05988_consen 8 SREEWLAARDALLAREKELTRARDAL 33 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666666665533334
No 82
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=22.10 E-value=2.1e+02 Score=31.62 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=18.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 019268 81 DLKKKEKELQAKEAELRRREQDVRRKE 107 (343)
Q Consensus 81 dL~kKeeEL~rkEaEL~rRE~eL~~re 107 (343)
...++|+|.++.+.||++.-+++.+-+
T Consensus 545 ~~~~~eke~~~L~~~lE~Ls~~~~e~q 571 (671)
T PF15390_consen 545 NNLQKEKETSQLSKELERLSRNFTEVQ 571 (671)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888887666655433
No 83
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=21.98 E-value=4e+02 Score=20.95 Aligned_cols=7 Identities=43% Similarity=0.577 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 019268 90 QAKEAEL 96 (343)
Q Consensus 90 ~rkEaEL 96 (343)
+.|.++|
T Consensus 37 ~~kt~~L 43 (89)
T PF00957_consen 37 EDKTEEL 43 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 84
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=21.88 E-value=8.2e+02 Score=25.60 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCCChhHHHHHHHHHHhhhhhhhhhhhh-hhhhhhcccCCCch-hHHH
Q 019268 143 RLQYVAFATYLGLFLCLLWNIVAVTTAWI---KGEGVKIWFLAIIYFIAGVPGAYVLWYR-PLYRAFSFKRDCSD-RVIA 217 (343)
Q Consensus 143 r~Vk~~y~lWl~~~~~l~~N~~~~~~~~i---~g~~~~~~~laily~i~g~P~sf~~WYr-plY~A~~~~r~~~~-~~~~ 217 (343)
..-+.=+|=|....+.|++.++.|+++.+ +++.-..+++ .++|+-.-.++|-- .+|-|.+. -.|| .+.-
T Consensus 200 ~~~~~E~~Rw~~~l~lL~~~lviC~~~l~gl~r~Sr~~li~~----s~~g~l~l~~~W~~~~~~l~~~v--~~sDfC~~p 273 (418)
T cd07912 200 QVSLYESYRWLAYLGLLSLLLVICLVLLVGLARHSRCLLIVF----SVCGLFALIISWLSLGLYLASAV--ALSDFCVDP 273 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--hhhhhhcCH
Confidence 33446678899999999999999877654 3443222222 22233333333321 12222210 0011 2345
Q ss_pred HHHHHhHH--HHHHhhccCCCCcCCccchhHHHH
Q 019268 218 DQLALNLV--SFLVFLSHYKPSCRTESAMKFGWF 249 (343)
Q Consensus 218 ~~~~~~~~--~~~~~~~~~~~~~r~~ss~~f~~f 249 (343)
|+.+.+.+ ++..-.-+||..|....+..|---
T Consensus 274 d~yi~~~~~~~~~~di~~yy~~C~~~~~npF~~~ 307 (418)
T cd07912 274 DDYVRNQTPSGLSSDILQYYLTCEPSTTNPFQQR 307 (418)
T ss_pred HHHHHhccccccchHHHHHHhcCCCCCCCcchHh
Confidence 78888887 333444569999988765555443
No 85
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=21.79 E-value=1e+02 Score=34.34 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019268 95 ELRRREQDVRRKEEAAAR 112 (343)
Q Consensus 95 EL~rRE~eL~~re~~~~~ 112 (343)
+|+.||+||.+||+++.+
T Consensus 450 qLelkEkElaerEq~l~r 467 (904)
T KOG4721|consen 450 QLELKEKELAEREQALER 467 (904)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456788888888877654
No 86
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=21.48 E-value=1.9e+02 Score=25.40 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=16.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 019268 82 LKKKEKELQAKEAELRRREQDVRR 105 (343)
Q Consensus 82 L~kKeeEL~rkEaEL~rRE~eL~~ 105 (343)
+++|.++|+++-++|++.+..|+.
T Consensus 89 l~~k~~~l~~~i~~L~~~~~~L~~ 112 (144)
T PRK13752 89 AEHKLKDVREKMADLARMEAVLSE 112 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777776666654
No 87
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.43 E-value=1.8e+02 Score=24.28 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=13.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 019268 82 LKKKEKELQAKEAELRRREQDVRR 105 (343)
Q Consensus 82 L~kKeeEL~rkEaEL~rRE~eL~~ 105 (343)
++++.++|+++-++|++..+.|+.
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l~~ 107 (123)
T cd04770 84 LEEKLAEVEAKIAELQALRAELAG 107 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566555666555555543
No 88
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=21.17 E-value=1.1e+03 Score=25.56 Aligned_cols=32 Identities=34% Similarity=0.359 Sum_probs=22.8
Q ss_pred CcccchhHHHHHh---hcCCceehHHHHHHHHHHH
Q 019268 273 GKSLTGVLPAVDV---MGDHALVGIFYFIGFGLFC 304 (343)
Q Consensus 273 g~g~~G~i~ai~~---~~~~~~vgi~~~i~~~lf~ 304 (343)
+|+.-|.+.|+.- +++-.+-|+..++++++++
T Consensus 356 ~~Snlg~i~Av~GA~~L~~~~~~~~~l~i~fill~ 390 (502)
T PF03806_consen 356 NWSNLGTILAVKGAEFLKSLGLPGIPLIIGFILLT 390 (502)
T ss_pred hhcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 7899999999876 3344456677777776655
No 89
>PHA03242 envelope glycoprotein M; Provisional
Probab=21.12 E-value=4.5e+02 Score=27.75 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=37.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCCcccccCcc--cchhHHHH-HhhcCCceehHHHHHHHHHHHHHHHHHHHHHH
Q 019268 243 AMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKS--LTGVLPAV-DVMGDHALVGIFYFIGFGLFCLESLVSIWVIQ 315 (343)
Q Consensus 243 s~~f~~ff~~~~~~i~f~i~~aiG~p~~f~g~g--~~G~i~ai-~~~~~~~~vgi~~~i~~~lf~~~a~~s~~~l~ 315 (343)
.+.+++.++++++..+|.+..+|-+ .+... ..+=+.+. .+++++. .+++....+|++|+++.+.-.|
T Consensus 94 v~y~~~t~~v~l~~aiY~ivgav~i---~r~~~~~~~~~~~~~~~~vgs~~---tlflg~l~~WtlQ~fVllLS~K 163 (428)
T PHA03242 94 VAFYAYTATLLLAVAAYAVAGAVTI---RRERRNQDAAELLAAARMVVPPA---TLLLGNLCAWLLQATVLLLAHK 163 (428)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHH---hhccccccchhHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777778887877777754 45432 23333333 3334432 3445556678887766554333
No 90
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=20.64 E-value=40 Score=28.72 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Q 019268 298 IGFGLFCLESLVSIWVIQQVYMYFRGSGKA 327 (343)
Q Consensus 298 i~~~lf~~~a~~s~~~l~~V~~~yR~~G~s 327 (343)
|-+.||++|+.+..-++--+.-|||+..+.
T Consensus 66 iESLLFaLQAAiGAgiIgY~lG~~~gr~~~ 95 (100)
T PRK02898 66 IESLLFALQAALGAGIIGYILGYYKGRSKR 95 (100)
T ss_pred HHHHHHHHHHHHhhhhhheeeeehhhhhhh
Confidence 678999999999999999999999876543
No 91
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.39 E-value=7.3e+02 Score=26.05 Aligned_cols=48 Identities=21% Similarity=0.452 Sum_probs=27.0
Q ss_pred CcccchhHHHHHhhcC---------C----c------eehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019268 273 GKSLTGVLPAVDVMGD---------H----A------LVGIFYFIGFGLFCLESLVSIWVIQQVYMYF 321 (343)
Q Consensus 273 g~g~~G~i~ai~~~~~---------~----~------~vgi~~~i~~~lf~~~a~~s~~~l~~V~~~y 321 (343)
|.|++|.+.++-.+-. | . -+.+|.++.+ .|++.++....+++|.-...
T Consensus 151 G~GLSaLlPsllaLaQGtg~~~C~~n~t~~r~fP~rFs~s~FFl~l~-~~~~~alaAF~vL~r~~~~~ 217 (439)
T KOG4255|consen 151 GMGLSALLPSLLALAQGTGRLECDLNGTPGRPFPPRFSVSTFFLALF-AFTCAALAAFFVLYRLGAHW 217 (439)
T ss_pred hccHHHHHHHHHHHHccCCceeecCCCCCCCCCCCCccHHHHHHHHH-HHHHHHHHHHHHHHhcCCCC
Confidence 5788888888766421 1 1 2344444444 45556666677775554443
No 92
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=20.33 E-value=3.7e+02 Score=26.86 Aligned_cols=9 Identities=11% Similarity=0.947 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 019268 311 IWVIQQVYM 319 (343)
Q Consensus 311 ~~~l~~V~~ 319 (343)
.|++.+++.
T Consensus 59 ~~~~~~~~~ 67 (398)
T PRK10747 59 EWLLRRIFR 67 (398)
T ss_pred HHHHHHHHh
Confidence 444444443
No 93
>PLN02189 cellulose synthase
Probab=20.31 E-value=1.5e+03 Score=26.86 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 019268 141 LQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKG 173 (343)
Q Consensus 141 ~Qr~Vk~~y~lWl~~~~~l~~N~~~~~~~~i~g 173 (343)
.||+.|..+.+|-+..+-.+.=+++-++.++.|
T Consensus 809 ~QRL~Yl~~~ly~~~sip~liY~~lP~l~Ll~g 841 (1040)
T PLN02189 809 LERFAYVNTTIYPFTSLPLLAYCTLPAICLLTG 841 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 477777776677666555555555555566666
Done!