Query 019268
Match_columns 343
No_of_seqs 209 out of 363
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 13:28:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 87.4 0.99 3.4E-05 35.0 5.3 31 80-110 26-56 (72)
2 3nmd_A CGMP dependent protein 71.2 9.5 0.00032 29.5 5.9 35 78-112 31-65 (72)
3 2oqq_A Transcription factor HY 62.9 17 0.00059 25.4 5.3 26 80-105 6-31 (42)
4 1lq7_A Alpha3W; three helix bu 55.5 21 0.00073 26.4 5.0 33 78-110 26-64 (67)
5 1zxa_A CGMP-dependent protein 43.7 43 0.0015 25.4 5.3 34 79-112 17-50 (67)
6 3he4_B Synzip5; heterodimeric 41.2 38 0.0013 23.4 4.2 26 79-104 5-30 (46)
7 2oqq_A Transcription factor HY 39.6 26 0.00089 24.5 3.1 22 87-108 6-27 (42)
8 4egx_A Kinesin-like protein KI 38.2 37 0.0013 29.8 4.8 26 92-117 28-53 (184)
9 3a7o_A Autophagy protein 16; c 34.2 52 0.0018 25.5 4.4 27 82-108 20-46 (75)
10 2qdq_A Talin-1; dimerisation d 31.9 63 0.0022 23.3 4.3 19 85-103 13-31 (50)
11 3he4_B Synzip5; heterodimeric 27.8 86 0.0029 21.7 4.2 24 86-109 5-28 (46)
12 2lw1_A ABC transporter ATP-bin 24.3 99 0.0034 23.8 4.6 28 84-111 19-46 (89)
13 2do5_A Splicing factor 3B subu 22.9 1.1E+02 0.0037 22.4 4.1 13 111-123 43-55 (58)
14 2js5_A Uncharacterized protein 22.7 47 0.0016 25.5 2.3 17 131-147 27-43 (71)
15 1zxa_A CGMP-dependent protein 22.3 95 0.0032 23.5 3.9 17 87-103 32-48 (67)
16 1fjk_A Cardiac phospholamban; 22.2 1.4E+02 0.0046 21.4 4.4 31 135-165 18-48 (52)
17 2b5u_A Colicin E3; high resolu 21.9 1E+02 0.0035 31.7 5.3 19 78-96 292-310 (551)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.36 E-value=0.99 Score=35.03 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=21.5
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019268 80 ADLKKKEKELQAKEAELRRREQDVRRKEEAA 110 (343)
Q Consensus 80 ~dL~kKeeEL~rkEaEL~rRE~eL~~re~~~ 110 (343)
..|++|.+||.+|++.++++|.+|..++..+
T Consensus 26 ~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI 56 (72)
T 3nmd_A 26 YALQEKIEELRQRDALIDELELELDQKDELI 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777776665543
No 2
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=71.20 E-value=9.5 Score=29.52 Aligned_cols=35 Identities=11% Similarity=0.315 Sum_probs=25.5
Q ss_pred chhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019268 78 TAADLKKKEKELQAKEAELRRREQDVRRKEEAAAR 112 (343)
Q Consensus 78 ~~~dL~kKeeEL~rkEaEL~rRE~eL~~re~~~~~ 112 (343)
..+++..|++-++..|.+|+.+|.+++.....+..
T Consensus 31 K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888888888776655543
No 3
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=62.92 E-value=17 Score=25.39 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=20.8
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHH
Q 019268 80 ADLKKKEKELQAKEAELRRREQDVRR 105 (343)
Q Consensus 80 ~dL~kKeeEL~rkEaEL~rRE~eL~~ 105 (343)
.||+.|.++|+.|-+||+.|=.-|++
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999877666654
No 4
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=55.48 E-value=21 Score=26.41 Aligned_cols=33 Identities=39% Similarity=0.541 Sum_probs=25.4
Q ss_pred chhhHHHhHHHHHHHHHHH------HHHHHHHHHHHHHH
Q 019268 78 TAADLKKKEKELQAKEAEL------RRREQDVRRKEEAA 110 (343)
Q Consensus 78 ~~~dL~kKeeEL~rkEaEL------~rRE~eL~~re~~~ 110 (343)
+-++|++|=+||.+|-+|| ++-|+|.+..++..
T Consensus 26 rieelkkkweelkkkieelggggevkkveeevkkleeei 64 (67)
T 1lq7_A 26 RIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEI 64 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 5678999999999998887 56777777666543
No 5
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=43.68 E-value=43 Score=25.44 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=24.0
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019268 79 AADLKKKEKELQAKEAELRRREQDVRRKEEAAAR 112 (343)
Q Consensus 79 ~~dL~kKeeEL~rkEaEL~rRE~eL~~re~~~~~ 112 (343)
++.++.|++-....|.+|+.+++|+++..+.+.+
T Consensus 17 ~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 17 AKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777888888888887775555544
No 6
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=41.22 E-value=38 Score=23.44 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=16.0
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHH
Q 019268 79 AADLKKKEKELQAKEAELRRREQDVR 104 (343)
Q Consensus 79 ~~dL~kKeeEL~rkEaEL~rRE~eL~ 104 (343)
-++|+.--+||+.|.+||+...+.|+
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 35666666777777777766444443
No 7
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=39.57 E-value=26 Score=24.49 Aligned_cols=22 Identities=14% Similarity=0.397 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019268 87 KELQAKEAELRRREQDVRRKEE 108 (343)
Q Consensus 87 eEL~rkEaEL~rRE~eL~~re~ 108 (343)
.||+.|+.+|+.|-.||.+|-.
T Consensus 6 ~eLE~r~k~le~~naeLEervs 27 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888887776643
No 8
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=38.21 E-value=37 Score=29.81 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 019268 92 KEAELRRREQDVRRKEEAAARAGIVL 117 (343)
Q Consensus 92 kEaEL~rRE~eL~~re~~~~~~g~~~ 117 (343)
||+.|++-|+..+.|+.++++.|+..
T Consensus 28 WeeKl~~te~~~~e~~~~l~~~gi~~ 53 (184)
T 4egx_A 28 WEEKLRRTEAIRMEREALLAEMGVAM 53 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcch
Confidence 55666555554556777788877643
No 9
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=34.17 E-value=52 Score=25.48 Aligned_cols=27 Identities=37% Similarity=0.498 Sum_probs=17.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 019268 82 LKKKEKELQAKEAELRRREQDVRRKEE 108 (343)
Q Consensus 82 L~kKeeEL~rkEaEL~rRE~eL~~re~ 108 (343)
+..-++||..||+|+.+.++.++-+..
T Consensus 20 l~~Lr~eL~~Ke~eI~~L~e~i~lk~k 46 (75)
T 3a7o_A 20 LAILQKELKSKEQEIRRLKEVIALKNK 46 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445566788888888777766655443
No 10
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=31.93 E-value=63 Score=23.31 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 019268 85 KEKELQAKEAELRRREQDV 103 (343)
Q Consensus 85 KeeEL~rkEaEL~rRE~eL 103 (343)
.++|+-|+|.||+.-.+.|
T Consensus 13 Aqe~iLr~ErELEeAr~~L 31 (50)
T 2qdq_A 13 AQEEMLRKERELEEARKKL 31 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555444444
No 11
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=27.78 E-value=86 Score=21.68 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019268 86 EKELQAKEAELRRREQDVRRKEEA 109 (343)
Q Consensus 86 eeEL~rkEaEL~rRE~eL~~re~~ 109 (343)
-+||+..-+||++|..||++..++
T Consensus 5 vkelknyiqeleernaelknlkeh 28 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEH 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHH
Confidence 357777777777777777765544
No 12
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.28 E-value=99 Score=23.77 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=22.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019268 84 KKEKELQAKEAELRRREQDVRRKEEAAA 111 (343)
Q Consensus 84 kKeeEL~rkEaEL~rRE~eL~~re~~~~ 111 (343)
+.++||+..++++.+.|.++...+..++
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999998888776554
No 13
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.89 E-value=1.1e+02 Score=22.38 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=8.0
Q ss_pred HHcCCCCCCCCCC
Q 019268 111 ARAGIVLEEKNWP 123 (343)
Q Consensus 111 ~~~g~~~~~nNWP 123 (343)
+..|+...++|-|
T Consensus 43 ~QtGi~lnkP~~~ 55 (58)
T 2do5_A 43 RQTGIVLNRPSGP 55 (58)
T ss_dssp HHHCCCCCCTTCS
T ss_pred hccceeecCCCCC
Confidence 4457766666655
No 14
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=22.66 E-value=47 Score=25.55 Aligned_cols=17 Identities=35% Similarity=0.688 Sum_probs=10.2
Q ss_pred ecCCCccchhhHHHHHH
Q 019268 131 HDIANEIPIHLQRLQYV 147 (343)
Q Consensus 131 hdI~~EIP~~~Qr~Vk~ 147 (343)
||+++|+|...+++.-+
T Consensus 27 HDLaEdLP~~w~~i~~v 43 (71)
T 2js5_A 27 HDLAEDLPTGWNRIMEV 43 (71)
T ss_dssp HHHHHSTTTSGGGHHHH
T ss_pred HHHhccchhhHHHHHHH
Confidence 66666666666655443
No 15
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.27 E-value=95 Score=23.52 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019268 87 KELQAKEAELRRREQDV 103 (343)
Q Consensus 87 eEL~rkEaEL~rRE~eL 103 (343)
.+|+.|.+|+++...+|
T Consensus 32 ~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 32 KRLSEKEEEIQELKRKL 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555554444444
No 16
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=22.18 E-value=1.4e+02 Score=21.36 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=21.0
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019268 135 NEIPIHLQRLQYVAFATYLGLFLCLLWNIVA 165 (343)
Q Consensus 135 ~EIP~~~Qr~Vk~~y~lWl~~~~~l~~N~~~ 165 (343)
.|+|++.++-..-+|.-+....+||++=++.
T Consensus 18 ie~~~qarqnlqelfvnfclilicllli~ii 48 (52)
T 1fjk_A 18 IEMPQQARQNLQNLFINFCLILIFLLLICII 48 (52)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888776677777776666776654443
No 17
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=21.90 E-value=1e+02 Score=31.71 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=14.8
Q ss_pred chhhHHHhHHHHHHHHHHH
Q 019268 78 TAADLKKKEKELQAKEAEL 96 (343)
Q Consensus 78 ~~~dL~kKeeEL~rkEaEL 96 (343)
+.+++++||||=.|+++|-
T Consensus 292 t~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 292 SPDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 4578888888888888776
Done!