Query 019268
Match_columns 343
No_of_seqs 209 out of 363
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 13:28:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019268.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019268hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q08a_ a.6.1.3 (A:) Transcrip 32.7 26 0.0019 25.4 4.6 27 82-108 44-70 (94)
2 d2azeb1 e.63.1.2 (B:201-301) T 21.5 69 0.005 23.9 5.2 25 80-104 4-28 (101)
3 d1iwga8 f.35.1.1 (A:513-566,A: 19.7 2.1E+02 0.015 22.9 9.1 65 275-341 94-160 (222)
4 d3b7sa1 a.118.1.7 (A:461-610) 16.6 23 0.0017 28.3 1.4 36 197-240 106-141 (150)
5 d2b7ta1 d.50.1.1 (A:1-73) dsRN 14.8 18 0.0013 25.2 0.2 21 321-341 47-68 (73)
6 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 13.4 1.1E+02 0.0078 21.5 4.1 20 85-104 31-50 (67)
7 d2azea1 e.63.1.1 (A:199-346) T 12.3 1.1E+02 0.008 24.5 4.5 18 81-98 10-27 (148)
8 d2e74e1 f.23.24.1 (E:1-32) Pet 10.9 1.1E+02 0.0078 18.2 2.9 16 246-261 7-22 (32)
9 d1nkpa_ a.38.1.1 (A:) Myc prot 10.6 1.9E+02 0.014 20.0 5.0 25 81-105 56-80 (88)
10 d2azea1 e.63.1.1 (A:199-346) T 10.5 1.6E+02 0.011 23.5 4.8 25 81-105 3-27 (148)
No 1
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=32.71 E-value=26 Score=25.42 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=22.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 019268 82 LKKKEKELQAKEAELRRREQDVRRKEE 108 (343)
Q Consensus 82 L~kKeeEL~rkEaEL~rRE~eL~~re~ 108 (343)
+.+|-+|+++|-+||++.+++|+...+
T Consensus 44 ~~~kl~~i~~kI~~L~~l~~~L~~l~~ 70 (94)
T d1q08a_ 44 VQERLQEVEARIAELQSMQRSLQRLND 70 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999998888876543
No 2
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.53 E-value=69 Score=23.87 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=16.9
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHH
Q 019268 80 ADLKKKEKELQAKEAELRRREQDVR 104 (343)
Q Consensus 80 ~dL~kKeeEL~rkEaEL~rRE~eL~ 104 (343)
..|++.-++|+++|++|++.-+.++
T Consensus 4 ~~L~~El~~L~~~E~~LD~li~~~~ 28 (101)
T d2azeb1 4 EGLTQDLRQLQESEQQLDHLMNICT 28 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888888877554443
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=19.67 E-value=2.1e+02 Score=22.94 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=36.5
Q ss_pred ccchhHHHHHhhcCCceehHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCChH-HHHHHHHHhhhhhh
Q 019268 275 SLTGVLPAVDVMGDHALVGIFYFIGFG-LFCLESLVSIWVIQQVYMYFRGSGKA-AEMKREAARGAMRA 341 (343)
Q Consensus 275 g~~G~i~ai~~~~~~~~vgi~~~i~~~-lf~~~a~~s~~~l~~V~~~yR~~G~s-~~ak~e~a~g~~~~ 341 (343)
+.+|.+.++..++.+.- +..+++.+ +.++..--++.++.+....+|..|++ .||-.|+++...|+
T Consensus 94 ~~~~~~~~l~~~g~~~~--~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~ 160 (222)
T d1iwga8 94 GVIGALLAATFRGLTND--VYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRP 160 (222)
T ss_dssp HHHHHHHHHHHTTCCBC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHcCCchh--hhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhh
Confidence 56666666666654321 22222222 33444444556666666667777776 47777777766654
No 4
>d3b7sa1 a.118.1.7 (A:461-610) Leukotriene A4 hydrolase C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.63 E-value=23 Score=28.27 Aligned_cols=36 Identities=11% Similarity=0.284 Sum_probs=28.2
Q ss_pred hhhhhhhhhcccCCCchhHHHHHHHHhHHHHHHhhccCCCCcCC
Q 019268 197 WYRPLYRAFSFKRDCSDRVIADQLALNLVSFLVFLSHYKPSCRT 240 (343)
Q Consensus 197 WYrplY~A~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 240 (343)
+-||||+++.. +-+++-++..-|.++=..|-|-||+
T Consensus 106 fvrPlYr~L~~--------~~~~r~~A~~~F~k~r~~YHpi~~~ 141 (150)
T d3b7sa1 106 FTRPLFKDLAA--------FDKSHDQAVRTYQEHKASMHPVTAM 141 (150)
T ss_dssp HHHHHHHHHHH--------SHHHHHHHHHHHHHHGGGSCHHHHH
T ss_pred ehHHHHHHHHh--------CcchHHHHHHHHHHHHhhcCHHHHH
Confidence 35999999821 1246778999999999999999985
No 5
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=14.77 E-value=18 Score=25.17 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=16.3
Q ss_pred HcCCChHH-HHHHHHHhhhhhh
Q 019268 321 FRGSGKAA-EMKREAARGAMRA 341 (343)
Q Consensus 321 yR~~G~s~-~ak~e~a~g~~~~ 341 (343)
|.|+|.|. +||++||.-++++
T Consensus 47 ~~g~G~SKK~Aeq~AA~~aL~~ 68 (73)
T d2b7ta1 47 FEGSGPTKKKAKLHAAEKALRS 68 (73)
T ss_dssp EEEEESSHHHHHHHHHHHHHHH
T ss_pred EEcCCCcHHHHHHHHHHHHHHH
Confidence 46777774 7888888888875
No 6
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.44 E-value=1.1e+02 Score=21.46 Aligned_cols=20 Identities=45% Similarity=0.630 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 019268 85 KEKELQAKEAELRRREQDVR 104 (343)
Q Consensus 85 KeeEL~rkEaEL~rRE~eL~ 104 (343)
-|+||++=...|+|.|+++.
T Consensus 31 iE~eLerCk~~irrLeqel~ 50 (67)
T d1k1fa_ 31 IEQELERAKASIRRLEQEVN 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566766666677776664
No 7
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.33 E-value=1.1e+02 Score=24.48 Aligned_cols=18 Identities=11% Similarity=0.444 Sum_probs=10.8
Q ss_pred hHHHhHHHHHHHHHHHHH
Q 019268 81 DLKKKEKELQAKEAELRR 98 (343)
Q Consensus 81 dL~kKeeEL~rkEaEL~r 98 (343)
|..++.+.+++|.++|++
T Consensus 10 E~~~~~erI~~K~~~Lqe 27 (148)
T d2azea1 10 ERQRRLERIKQKQSQLQE 27 (148)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666666655
No 8
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.89 E-value=1.1e+02 Score=18.24 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 019268 246 FGWFFLFYLLHIGFCI 261 (343)
Q Consensus 246 f~~ff~~~~~~i~f~i 261 (343)
|+..|+..++.++.-+
T Consensus 7 fyivfialffgiavgi 22 (32)
T d2e74e1 7 FYIVFIALFFGIAVGI 22 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3444444444443333
No 9
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.57 E-value=1.9e+02 Score=19.95 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=11.7
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHH
Q 019268 81 DLKKKEKELQAKEAELRRREQDVRR 105 (343)
Q Consensus 81 dL~kKeeEL~rkEaEL~rRE~eL~~ 105 (343)
.|+++.++|+...++|+++.++|+.
T Consensus 56 ~L~~~~~~l~~~~~~l~~~~~~L~~ 80 (88)
T d1nkpa_ 56 SVQAEEQKLISEEDLLRKRREQLKH 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555444445444444443
No 10
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.51 E-value=1.6e+02 Score=23.51 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=17.6
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHH
Q 019268 81 DLKKKEKELQAKEAELRRREQDVRR 105 (343)
Q Consensus 81 dL~kKeeEL~rkEaEL~rRE~eL~~ 105 (343)
|.++-++|.++|.++++++.++|+.
T Consensus 3 e~~~Le~E~~~~~erI~~K~~~Lqe 27 (148)
T d2azea1 3 ECQNLEVERQRRLERIKQKQSQLQE 27 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777788888777776664
Done!