BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019269
(343 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 78/208 (37%), Gaps = 29/208 (13%)
Query: 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKED 103
L + C D GL + L +I +I T DG +D F+V D +
Sbjct: 758 LTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEPHQLG 817
Query: 104 TYEHL--KTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTC 161
HL + + G I +E T+ + +P ++
Sbjct: 818 RLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRAIHVPPRVV------------------ 859
Query: 162 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDL 221
IDN+ S HT++++ +D GLL+D+ L ++Q+S + G +D+
Sbjct: 860 ------IDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHIT--TYGMRAVDV 911
Query: 222 F-IMQADGKKIVDPSKQNGLSSRLWMEL 248
F + G KI DP + L L L
Sbjct: 912 FYVRDLLGMKITDPVRLARLRETLLASL 939
Score = 35.0 bits (79), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 29/152 (19%)
Query: 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDP 234
G T + ++C DH GL I L + R G ++ +G +P
Sbjct: 754 GVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEP 813
Query: 235 SK--------QNGLSSRL----------------WMELLQ-PLRVTVVSRGPDTELLVAN 269
+ + LS RL M + P RV + + D ++
Sbjct: 814 HQLGRLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRAIHVPPRVVIDNTASDRHTVI-- 871
Query: 270 PVELSGKGRPLVFHDITLALKMLDICIFSAEI 301
E++G+ RP + HD+T AL + I SA I
Sbjct: 872 --EVNGRDRPGLLHDVTSALSSASLQISSAHI 901
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
+++++ DR GLL+DVT+ L L I I TT + +D+F+V D
Sbjct: 870 VIEVNGRDRPGLLHDVTSALSSASLQISSAHI-TTYGMRAVDVFYVRD 916
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 26/188 (13%)
Query: 50 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 109
D GL + + + I KI+T DG +D+F V H +++E K
Sbjct: 735 DHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTVQTLEG--HAIEKEERIARLAK 792
Query: 110 TILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTID 169
T+ +++ D+ + A + LP HL +P V +D
Sbjct: 793 TV--RDVLTGDLPLE----KALRRQPPRLPERT---RHLTVPPR------------VIVD 831
Query: 170 NSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADG 228
N S HT+++I +D G LY + R L D +Q+S R S G +D F ++ G
Sbjct: 832 NQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVS--TYGERVVDSFYVKDVFG 889
Query: 229 KKIVDPSK 236
KIV +K
Sbjct: 890 MKIVHRAK 897
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
+++++ DR G LY VT L ++ + I ++ST + +V+D F+V D
Sbjct: 840 VIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGE-RVVDSFYVKD 886
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 166 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 225
V IDN+ S HT++++ +D GLLYD+ R L + +Q+S + S G ID+F ++
Sbjct: 847 VLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKIS--TYGEKAIDVFYVK 904
Query: 226 -ADGKKIVDPSKQNGLSSRLWMELLQP 251
G K+ +K + RL L P
Sbjct: 905 DVFGLKVTHENKLAQIRERLLHALADP 931
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
+++++ DR GLLYD+T L L L I KIST + K +D+F+V D
Sbjct: 859 VIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGE-KAIDVFYVKD 905
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 41/199 (20%)
Query: 46 LSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR------ELLHTRK 99
++ DR+GL D+ + L + ++ T+ G+ +D+F+V D E +
Sbjct: 740 IAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRALR 799
Query: 100 RKEDTYEHLKTILGNAMISCDVE-MVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGS 158
R D E G+A+ VE G+E T +A++F +
Sbjct: 800 RLADALEAAGK--GDALA---VEPRRGSEQT---RAAAFAIAP----------------- 834
Query: 159 LTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCE 218
SVTIDN S T+V+ +D GLL+ + +TL D + + G
Sbjct: 835 ------SVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHID--GYGERA 886
Query: 219 IDLFIMQ-ADGKKIVDPSK 236
+D F +Q +G K+ D K
Sbjct: 887 VDAFYVQTTEGGKVTDTRK 905
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 41/199 (20%)
Query: 46 LSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR------ELLHTRK 99
++ DR+GL D+ + L + ++ T+ G+ +D+F+V D E +
Sbjct: 740 IAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRALR 799
Query: 100 RKEDTYEHLKTILGNAMISCDVE-MVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGS 158
R D E G+A+ VE G+E T +A++F +
Sbjct: 800 RLADALEAAGK--GDALA---VEPRRGSEQT---RAAAFAIAP----------------- 834
Query: 159 LTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCE 218
SVTIDN S T+V+ +D GLL+ + +TL D + + G
Sbjct: 835 ------SVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHID--GYGERA 886
Query: 219 IDLFIMQ-ADGKKIVDPSK 236
+D F +Q +G K+ D K
Sbjct: 887 VDAFYVQTTEGGKVTDTRK 905
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
++++ C DR GLL ++TAVL +L L I+ +I+T + KV+D F+VTD
Sbjct: 839 VIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGE-KVIDTFYVTD 885
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 165 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-I 223
SV I NSLS T++++ C D GLL +I L D ++ + R + G ID F +
Sbjct: 826 SVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARIT--TFGEKVIDTFYV 883
Query: 224 MQADGKKIVDPSKQNGLSSRL 244
G+KI SK+ +++R+
Sbjct: 884 TDLVGQKISGDSKRANITARM 904
>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum
(strain HLK1) GN=glnD PE=3 SV=1
Length = 938
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 31/192 (16%)
Query: 50 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 109
DR L D+ + + ++ T+ G+ +D+F+V D
Sbjct: 741 DRPRLFVDLAEAITAAGANVMGARVFTSRAGQALDVFYVQDAS----------------- 783
Query: 110 TILGNAMISCDVEMVG--TEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVT 167
G S D + E AC A+ P A P +L + +V
Sbjct: 784 ---GQPFGSHDPRALARLAETLAC--AARGEPVA----REPRKPQDLGRTAAFAITPAVM 834
Query: 168 IDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IMQA 226
+DN S T+V+ +D GLL + RT+ D + + G +D F ++ A
Sbjct: 835 LDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHID--GYGERAVDAFYVVDA 892
Query: 227 DGKKIVDPSKQN 238
DG+K+ D K+N
Sbjct: 893 DGRKLTDARKRN 904
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
++++ C DR GLL D+TAV+ +L L I +I+T + KV+D F+VTD
Sbjct: 841 VIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGE-KVIDTFYVTD 887
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 165 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-I 223
SVTI N LS T++++ C D GLL D+ + D ++ + R + G ID F +
Sbjct: 828 SVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARIT--TFGEKVIDTFYV 885
Query: 224 MQADGKKIVDPSKQNGLSSRL 244
G+K+ + ++Q ++ RL
Sbjct: 886 TDLFGQKVTNDNRQASIAQRL 906
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 166 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 224
VTI NSLS T+++I C D GLL ++ L D ++ + R + G ID F ++
Sbjct: 828 VTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARIT--TFGEKVIDTFYVI 885
Query: 225 QADGKKIVDPSKQNGLSSRL 244
G+KI + ++Q +S RL
Sbjct: 886 DLVGQKITNENRQGSISVRL 905
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
++++ C DR GLL +VTAVL +L L I +I+T + KV+D F+V D
Sbjct: 840 VIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGE-KVIDTFYVID 886
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
++++ C DR GLL ++TAVL +L L I+ +I+T + KV+D F+V D
Sbjct: 840 VIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGE-KVIDTFYVAD 886
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 165 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 224
SV I NSLS T++++ C D GLL +I L D ++ + R + G ID F +
Sbjct: 827 SVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARIT--TFGEKVIDTFYV 884
Query: 225 QAD--GKKIVDPSKQNGLSSRL 244
AD G+KI + +++ +++RL
Sbjct: 885 -ADLVGQKISNENRRAYITARL 905
>sp|Q87MD6|GLND_VIBPA [Protein-PII] uridylyltransferase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=glnD PE=3 SV=1
Length = 874
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 71/197 (36%), Gaps = 34/197 (17%)
Query: 50 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 109
D+ L V A L + +I T+ DG V+D F V D
Sbjct: 700 DQPALFATVVAELDRRNFNVHDAQIMTSKDGHVIDTFMVLDQH----------------- 742
Query: 110 TILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTID 169
G A+ V +T +A P+ I L NV +D
Sbjct: 743 ---GEAIDESRHAAVIKHLTHVLEAGR--PTKI--------KTRRTPNKLQHFNVKTKVD 789
Query: 170 NSLSPG--HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQAD 227
+ G HTL++ V D GLL + RT D NI + + + G DLFI+ ++
Sbjct: 790 FLPTKGKKHTLMEFVALDTPGLLAKVGRTFADLNINLHGAKIT--TIGERAEDLFILTSE 847
Query: 228 GKKIVDPSKQNGLSSRL 244
+ +QN L +L
Sbjct: 848 AGGRLSEEQQNELRDKL 864
>sp|Q65SZ8|GLND_MANSM [Protein-PII] uridylyltransferase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=glnD PE=3 SV=1
Length = 875
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR-ELLHTRKRK 101
++L D+ GLL DV+ V EL L+I+ KI+T + K D F +T+ + E L R+R+
Sbjct: 807 MELFTLDKAGLLADVSLVFSELNLSIQNAKITTIGE-KAQDFFILTNAKGEALSERERQ 864
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD-TRELLHTRKRK 101
++++ DR GLL +VTAVL +L L I I+T + KV+D F+VTD + + R+
Sbjct: 845 VIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGE-KVIDTFYVTDLVGSKITSENRQ 903
Query: 102 EDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPV-ELPSGSLT 160
+ LK +L + +A +PS II PV +P GS T
Sbjct: 904 MNIAARLKAVLAGEV---------------DEARERMPSGII----APTPVSRVPHGSKT 944
Query: 161 C 161
Sbjct: 945 T 945
Score = 35.8 bits (81), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 166 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 224
VTI N+LS T++++ D GLL ++ L D ++ ++ + G ID F +
Sbjct: 833 VTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHIT--TFGEKVIDTFYVT 890
Query: 225 QADGKKIVDPSKQNGLSSRL 244
G KI ++Q +++RL
Sbjct: 891 DLVGSKITSENRQMNIAARL 910
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 33 SFSPKPSDVF-LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT 91
+F + SD++ ++++ DR GLLYD+T L + I I+T +V+D F+V D
Sbjct: 841 AFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATY-GAQVVDSFYVKDM 899
Query: 92 REL-LHTRKRKEDTYEHLKTIL 112
L LH + R+E + L+ +
Sbjct: 900 FGLKLHQKNRQETLEKKLRQAI 921
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 166 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 225
+ DN S +T++++ +D GLLYD+ RTL NI ++ + G +D F ++
Sbjct: 840 IAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIA--TYGAQVVDSFYVK 897
Query: 226 -ADGKKIVDPSKQNGLSSRLWMELLQ 250
G K+ ++Q L +L +++
Sbjct: 898 DMFGLKLHQKNRQETLEKKLRQAIVE 923
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
++++ DR GLL +VTAVL +L L I I+T + KV+D F+VTD
Sbjct: 845 VIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGE-KVIDTFYVTD 891
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 166 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 224
VTI N+LS T++++ D GLL ++ L D ++ ++ + G ID F +
Sbjct: 833 VTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHIT--TFGEKVIDTFYVT 890
Query: 225 QADGKKIVDPSKQNGLSSRL 244
G KI ++Q +++RL
Sbjct: 891 DLVGSKITSENRQMNIAARL 910
>sp|Q470D5|GLND_CUPPJ [Protein-PII] uridylyltransferase OS=Cupriavidus pinatubonensis
(strain JMP134 / LMG 1197) GN=glnD PE=3 SV=1
Length = 869
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR 92
+LL LS DR GLLY +T VL + +++ +I+T + +V D+F V +R
Sbjct: 799 YLLSLSANDRTGLLYAITRVLAKHRVSVHTARINTLGE-RVEDVFLVDGSR 848
>sp|A5UBF9|GLND_HAEIE [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
PittEE) GN=glnD PE=3 SV=1
Length = 863
Score = 38.1 bits (87), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 36/213 (16%)
Query: 34 FSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR- 92
FS ++VF+ C D+ L V + + + +I +I TT DG V D F +T+
Sbjct: 682 FSLGGTEVFIY---CQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNG 738
Query: 93 ELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPV 152
EL+ +R+E L+ L A+ S ++ IT Q F + LH +
Sbjct: 739 ELVEFDRRRE-----LEQALTLALQS--EKLSALSITPNRQLQHFTVQTDVRFLHEN--- 788
Query: 153 ELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRR 212
HT +++V D GLL + + + N+ + + +
Sbjct: 789 --------------------KKEHTEMELVALDKAGLLAQVSQIFSELNLNLLNAKITT- 827
Query: 213 QRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 245
G D FI+ + +D ++ L + L+
Sbjct: 828 -VGEKAEDFFILTNQFGQALDSQQREILRNVLY 859
>sp|Q5LWE5|GLND_RUEPO [Protein-PII] uridylyltransferase OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=glnD PE=3 SV=1
Length = 908
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 31/202 (15%)
Query: 47 SCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKED 103
+C+ D G+ + L + + + TT DG V D F++ D + R
Sbjct: 720 ACFAMADHPGIFSRMAGALALVGANVVDARSYTTKDGYVTDAFWIQDAEGHPYEAARLPR 779
Query: 104 TYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSN 163
+ + L +++ D +I +A ++P
Sbjct: 780 LSQMILKTLKGEVVARDALKSRDKIKKREKA-------------FNVPTH---------- 816
Query: 164 VSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFI 223
+T DN S +T++++ +D GLLYD+ R L N+ ++ + G +D F
Sbjct: 817 --ITFDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIA--TYGEQVVDSFY 872
Query: 224 MQ-ADGKKIVDPSKQNGLSSRL 244
++ G K +KQ L ++L
Sbjct: 873 VKDMFGLKYHSEAKQRTLETKL 894
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 33 SFSPKPSDVF-LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT 91
+F + SD++ ++++ DR GLLYD+ L + I I+T + +V+D F+V D
Sbjct: 818 TFDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGE-QVVDSFYVKDM 876
Query: 92 RELLHTRKRKEDTYE 106
L + + K+ T E
Sbjct: 877 FGLKYHSEAKQRTLE 891
>sp|Q1LNG0|GLND_RALME [Protein-PII] uridylyltransferase OS=Ralstonia metallidurans
(strain CH34 / ATCC 43123 / DSM 2839) GN=glnD PE=3 SV=1
Length = 857
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR 92
+LL +S DR GLLY + VL + +++ +I+T + +V D+F V +R
Sbjct: 787 YLLSVSANDRTGLLYAIARVLAKHRVSVHSARINTLGE-RVEDVFLVDGSR 836
>sp|Q8XZJ3|GLND_RALSO [Protein-PII] uridylyltransferase OS=Ralstonia solanacearum (strain
GMI1000) GN=glnD PE=3 SV=1
Length = 861
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRK 99
+LL LS DR GLLY + VL +++ +I+T G+ ++ F+ D R L K
Sbjct: 791 YLLSLSATDRTGLLYAIARVLARHRVSVHTARINTL--GERVEDVFLLDGRRLTQDNK 846
>sp|Q0J709|UP12_ORYSJ Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2
Length = 283
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 28/174 (16%)
Query: 40 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRK 99
D +++++ DR G L D L L L + K + GK + L +L RK
Sbjct: 88 DATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAIT----KLSTGRK 143
Query: 100 RKE-DTYEHLKTILGNAMISCDVEMVGTEITACSQ---ASSFLPSAIIDMLHLDMPVELP 155
E + E ++ + N MI E A SQ ++F P +++ +D+
Sbjct: 144 IGEPELLEAVRLTIINNMIQYHPE-------ASSQLALGATFGPEPPTELVDVDI----- 191
Query: 156 SGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRF 209
+++ + D P +L+ + D GLL D+++ + D NI V G F
Sbjct: 192 -----ATHIDIYDDG---PDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEF 237
>sp|P83643|UP12_ORYSI Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza
sativa subsp. indica GN=OsI_027381 PE=1 SV=2
Length = 283
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 28/174 (16%)
Query: 40 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRK 99
D +++++ DR G L D L L L + K + GK + L +L RK
Sbjct: 88 DATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAIT----KLSTGRK 143
Query: 100 RKE-DTYEHLKTILGNAMISCDVEMVGTEITACSQ---ASSFLPSAIIDMLHLDMPVELP 155
E + E ++ + N MI E A SQ ++F P +++ +D+
Sbjct: 144 IGEPELLEAVRLTIINNMIQYHPE-------ASSQLALGATFGPEPPTELVDVDI----- 191
Query: 156 SGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRF 209
+++ + D P +L+ + D GLL D+++ + D NI V G F
Sbjct: 192 -----ATHIDIYDDG---PDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEF 237
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
++++ DR GLL ++T L +L L I I+T + KV+D F+VTD
Sbjct: 848 VIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGE-KVIDTFYVTD 894
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 69/184 (37%), Gaps = 31/184 (16%)
Query: 68 TIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTE 127
I +I TT DG+ +D ++ RE R ED E VG
Sbjct: 762 NIVDAQIFTTADGRALDTILIS--REF----DRDEDERRR-------------AERVGRL 802
Query: 128 ITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNV--SVTIDNSLSPGHTLVQIVCQD 185
I S+LP I P + I N+LS +++++ D
Sbjct: 803 IEDVLSGKSWLPEMIEKRTK-------PKRGAKVFKIPPRAEIRNTLSNRFSVIEVEGLD 855
Query: 186 HKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IMQADGKKIVDPSKQNGLSSRL 244
GLL +I TL D ++ ++ + G ID F + G+KI P++ + +RL
Sbjct: 856 RPGLLSEITGTLSDLSLDIASAHIT--TFGEKVIDTFYVTDLTGQKIDSPARIATIRNRL 913
Query: 245 WMEL 248
L
Sbjct: 914 MATL 917
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 166 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR---FSRRQRGNCEIDLF 222
VTI+N S +T++++ D GLLY++ + N+ ++ F R R D+F
Sbjct: 838 VTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERAR-----DVF 892
Query: 223 -IMQADGKKIVDPSKQNGLSSRL 244
+ G +I P++Q+ + S L
Sbjct: 893 YVTDLLGAQINAPTRQSAIKSAL 915
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 35.4 bits (80), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 166 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR---FSRRQRGNCEIDLF 222
VTI+N S HT++++ D GLL+ + + N+ ++ F R R D+F
Sbjct: 837 VTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERAR-----DVF 891
Query: 223 -IMQADGKKIVDPSKQNGLSSRL 244
+ G +I P++Q + L
Sbjct: 892 YVTDLLGARITAPTRQAAIKRAL 914
>sp|A8GIE8|GLND_SERP5 [Protein-PII] uridylyltransferase OS=Serratia proteamaculans
(strain 568) GN=glnD PE=3 SV=1
Length = 892
Score = 35.0 bits (79), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 33 SFSPKPSDVF-LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT 91
SF P +D L+L+ D+ GLL V V +L L++ +IST + +V DLF + D+
Sbjct: 807 SFLPTHTDRRSYLELTALDQPGLLARVGEVFADLNLSLHGARISTIGE-RVEDLFILADS 865
Query: 92 -RELLHTRKRKE 102
R L+ R++
Sbjct: 866 DRRALNPETRRK 877
>sp|P43919|GLND_HAEIN [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=glnD PE=3 SV=1
Length = 863
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 34 FSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR- 92
FS ++VF+ C D+ L V + + + +I +I TT DG V D F +T+
Sbjct: 682 FSLGGTEVFIY---CQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNG 738
Query: 93 ELLHTRKRKE 102
EL+ +R+E
Sbjct: 739 ELVEFDRRRE 748
>sp|Q4QJM6|GLND_HAEI8 [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
86-028NP) GN=glnD PE=3 SV=1
Length = 863
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 34 FSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR- 92
FS ++VF+ C D+ L V + + + +I +I TT DG V D F +T+
Sbjct: 682 FSLGGTEVFIY---CQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNG 738
Query: 93 ELLHTRKRKE 102
EL+ +R+E
Sbjct: 739 ELVEFDRRRE 748
>sp|P66014|RELA_MYCTU Bifunctional (p)ppGpp synthase/hydrolase relA OS=Mycobacterium
tuberculosis GN=relA PE=1 SV=2
Length = 738
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 34 FSPKPSDVFL--LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLF 86
++P PS VFL +++ DR LL DVT L + ++ I ++T+ D + F
Sbjct: 651 WAPSPSSVFLVAIQVEALDRHRLLSDVTRALADEKVNILSASVTTSGDRVAISRF 705
>sp|P66015|RELA_MYCBO Probable GTP pyrophosphokinase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=relA PE=3 SV=1
Length = 790
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 34 FSPKPSDVFL--LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLF 86
++P PS VFL +++ DR LL DVT L + ++ I ++T+ D + F
Sbjct: 703 WAPSPSSVFLVAIQVEALDRHRLLSDVTRALADEKVNILSASVTTSGDRVAISRF 757
>sp|Q5NPH0|GLND_ZYMMO [Protein-PII] uridylyltransferase OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 31821 / ZM4 / CP4) GN=glnD PE=3
SV=1
Length = 926
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 28 PFLFFSFSPKPSDVF-LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLF 86
P +F + SD F +++++ DR LL+D+ L LTI I+T + + +D+F
Sbjct: 835 PLVFID--NQASDRFTVIEVNAQDRPALLHDLGCALFNARLTISSAHIATYGE-RAVDVF 891
Query: 87 FVTD 90
+V+D
Sbjct: 892 YVSD 895
>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=glnD PE=3 SV=1
Length = 934
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
++++ DR GLL ++T ++ +L L I I+T + KV+D F+VTD
Sbjct: 848 VIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGE-KVIDSFYVTD 894
>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain
1330) GN=glnD PE=3 SV=1
Length = 934
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
++++ DR GLL ++T ++ +L L I I+T + KV+D F+VTD
Sbjct: 848 VIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGE-KVIDSFYVTD 894
>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1
Length = 934
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
++++ DR GLL ++T ++ +L L I I+T + KV+D F+VTD
Sbjct: 848 VIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGE-KVIDSFYVTD 894
>sp|Q57FN0|GLND_BRUAB [Protein-PII] uridylyltransferase OS=Brucella abortus biovar 1
(strain 9-941) GN=glnD PE=3 SV=1
Length = 934
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
++++ DR GLL ++T ++ +L L I I+T + KV+D F+VTD
Sbjct: 848 VIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGE-KVIDSFYVTD 894
>sp|Q2YNZ1|GLND_BRUA2 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain 2308)
GN=glnD PE=3 SV=1
Length = 934
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
++++ DR GLL ++T ++ +L L I I+T + KV+D F+VTD
Sbjct: 848 VIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGE-KVIDSFYVTD 894
>sp|B2S8D8|GLND_BRUA1 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain S19)
GN=glnD PE=3 SV=1
Length = 934
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
++++ DR GLL ++T ++ +L L I I+T + KV+D F+VTD
Sbjct: 848 VIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGE-KVIDSFYVTD 894
>sp|A5VN81|GLND_BRUO2 [Protein-PII] uridylyltransferase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=glnD PE=3 SV=1
Length = 934
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
++++ DR GLL ++T ++ +L L I I+T + KV+D F+VTD
Sbjct: 848 VIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGE-KVIDSFYVTD 894
>sp|B0CIQ3|GLND_BRUSI [Protein-PII] uridylyltransferase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=glnD PE=3 SV=1
Length = 934
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
++++ DR GLL ++T ++ +L L I I+T + KV+D F+VTD
Sbjct: 848 VIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGE-KVIDSFYVTD 894
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 166 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR---FSRRQRGNCEIDLF 222
V+I+N S +T++++ D GLLY++ + N+ ++ F R R D+F
Sbjct: 839 VSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERAR-----DVF 893
Query: 223 -IMQADGKKIVDPSKQNGLSSRL 244
+ G +I P++Q + S L
Sbjct: 894 YVTDLLGAQINAPTRQAAIKSAL 916
>sp|Q2NRK5|GLND_SODGM [Protein-PII] uridylyltransferase OS=Sodalis glossinidius (strain
morsitans) GN=glnD PE=3 SV=1
Length = 896
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 34 FSPKPSDV-FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
F P P++ L+L+ D+ GLL V+ V +L +++ +IST + +V DLF + D
Sbjct: 812 FLPSPTERRSYLELTALDQPGLLARVSEVFVDLGISLHGARISTIGE-RVEDLFILAD 868
>sp|Q5NZH8|GLND_AROAE [Protein-PII] uridylyltransferase OS=Aromatoleum aromaticum (strain
EbN1) GN=glnD PE=3 SV=1
Length = 862
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 89
++L L+ DR+GLL+ V VL + + + KI+T + +V D F ++
Sbjct: 793 YILSLTAADRRGLLFAVAEVLAQNGIVLHTAKIATLGE-RVEDTFLLS 839
>sp|Q60BB2|GLND_METCA [Protein-PII] uridylyltransferase OS=Methylococcus capsulatus
(strain ATCC 33009 / NCIMB 11132 / Bath) GN=glnD PE=3
SV=1
Length = 877
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 34 FSPKPSDVF-LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90
F P + F +L+L DR GLL V + + KIST + D+FF+TD
Sbjct: 795 FHDDPQNRFSILELIATDRPGLLSKVGQAFMRTGIRLHNAKISTV-GSRAEDIFFITD 851
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 166 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR---FSRRQRGNCEIDLF 222
V+I+N S +T++++ D GLLY++ + N+ ++ F R R D+F
Sbjct: 839 VSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERAR-----DVF 893
Query: 223 -IMQADGKKIVDPSKQNGLSSRL 244
+ G +I P++Q + S L
Sbjct: 894 YVTDLLGAQINAPTRQAAIKSAL 916
>sp|C1CY24|COAD_DEIDV Phosphopantetheine adenylyltransferase OS=Deinococcus deserti
(strain VCD115 / DSM 17065 / LMG 22923) GN=coaD PE=3
SV=1
Length = 170
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 163 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF 222
NVSV S G LV + Q+HKG++ +R + DY ++ + RQ G E +F
Sbjct: 64 NVSVD-----SFGGLLVDYMAQEHKGIIIRGLRAVSDYEYELQIAHLN-RQIGEVET-VF 116
Query: 223 IMQADGKKIVDPSKQNGLSS 242
IM A V S ++S
Sbjct: 117 IMAATRWSFVSSSMVREIAS 136
>sp|C6DAI1|GLND_PECCP [Protein-PII] uridylyltransferase OS=Pectobacterium carotovorum
subsp. carotovorum (strain PC1) GN=glnD PE=3 SV=1
Length = 904
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT 91
++LS D+ GLL + + +L L++ +IST + +V DLF + D+
Sbjct: 828 MELSALDQPGLLARIGEIFADLNLSLHGARISTIGE-RVEDLFILADS 874
>sp|Q65U07|GLO2_MANSM Hydroxyacylglutathione hydrolase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=gloB PE=3 SV=1
Length = 236
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 120 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLV 179
D+ + G TA A+ + I H + V +PSG T ++VS IDN L G TL
Sbjct: 70 DIPVYGPAETADKGATHIVNEGNIQTAHYRIEV-VPSGGHTANHVSYLIDNHLFCGDTLF 128
Query: 180 QIVC 183
C
Sbjct: 129 SAGC 132
>sp|Q47F95|GLND_DECAR [Protein-PII] uridylyltransferase OS=Dechloromonas aromatica
(strain RCB) GN=glnD PE=3 SV=1
Length = 852
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT--DTRELLHTRK 99
F+L L DR GLLY V L E + KI+T + + D+F ++ D R+ H R
Sbjct: 783 FILSLVAADRPGLLYTVANTLTEHGAYLHTAKITTLGE-RAEDVFLISGGDLRD-THNRI 840
Query: 100 RKE 102
R E
Sbjct: 841 RLE 843
>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila
(strain L48) GN=glnD PE=3 SV=1
Length = 900
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Query: 165 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 224
VTI N T+++I D GLL I R +++I + + + E FI
Sbjct: 803 QVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGE-RVEDVFFIT 861
Query: 225 QADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTEL 265
AD + + DP L SRL ++Q L+ S + +
Sbjct: 862 DADNQPLSDPQ----LCSRLQEAIIQQLQAGQASEASPSRM 898
>sp|Q3AQF7|Y1513_CHLCH UPF0758 protein Cag_1513 OS=Chlorobium chlorochromatii (strain
CaD3) GN=Cag_1513 PE=3 SV=1
Length = 222
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 107 HLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVE-LPSGSLTCSNVS 165
HL T N +I ++ +GT TA SAI + H + V PSG + SN
Sbjct: 127 HLNT--KNQVIKNELISIGTLNTAVIHPREIFKSAIRESAHSIIVVHNHPSGDVNPSNAD 184
Query: 166 VTIDNSLSPGHTLVQIVCQDH 186
I N L +QI DH
Sbjct: 185 KKITNELKQAGAFMQIEMLDH 205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,492,052
Number of Sequences: 539616
Number of extensions: 5513810
Number of successful extensions: 11465
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 11399
Number of HSP's gapped (non-prelim): 116
length of query: 343
length of database: 191,569,459
effective HSP length: 118
effective length of query: 225
effective length of database: 127,894,771
effective search space: 28776323475
effective search space used: 28776323475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)