Query 019269
Match_columns 343
No_of_seqs 250 out of 1964
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:05:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 6.8E-29 1.5E-33 263.5 24.4 174 161-341 662-851 (854)
2 PRK05007 PII uridylyl-transfer 100.0 3.6E-28 7.9E-33 258.8 24.4 173 162-341 687-876 (884)
3 PRK01759 glnD PII uridylyl-tra 100.0 7.4E-28 1.6E-32 255.6 24.9 184 33-248 669-853 (854)
4 PRK05007 PII uridylyl-transfer 100.0 2.8E-27 6.1E-32 252.0 25.8 187 33-250 693-880 (884)
5 PRK00275 glnD PII uridylyl-tra 100.0 9.7E-27 2.1E-31 248.0 27.2 184 39-251 702-888 (895)
6 PRK04374 PII uridylyl-transfer 99.9 6.4E-26 1.4E-30 240.4 26.7 190 28-249 677-867 (869)
7 PRK03059 PII uridylyl-transfer 99.9 6E-26 1.3E-30 240.9 26.0 195 23-249 661-855 (856)
8 TIGR01693 UTase_glnD [Protein- 99.9 1E-25 2.2E-30 240.3 24.4 173 163-341 655-847 (850)
9 PRK05092 PII uridylyl-transfer 99.9 1.3E-24 2.9E-29 233.3 26.8 191 34-251 725-917 (931)
10 PRK00275 glnD PII uridylyl-tra 99.9 7.9E-25 1.7E-29 233.3 24.5 173 163-340 688-882 (895)
11 TIGR01693 UTase_glnD [Protein- 99.9 1.3E-24 2.9E-29 231.8 25.6 184 37-248 664-849 (850)
12 PRK04374 PII uridylyl-transfer 99.9 2.1E-24 4.5E-29 229.0 24.6 169 164-341 677-864 (869)
13 PRK03381 PII uridylyl-transfer 99.9 7.4E-24 1.6E-28 223.1 24.5 176 39-245 597-773 (774)
14 PRK03381 PII uridylyl-transfer 99.9 8.1E-24 1.8E-28 222.8 23.7 166 163-341 587-774 (774)
15 PRK05092 PII uridylyl-transfer 99.9 1.2E-23 2.5E-28 226.1 25.2 174 162-340 718-911 (931)
16 COG2844 GlnD UTP:GlnB (protein 99.9 2.9E-24 6.3E-29 218.2 19.2 171 163-340 671-858 (867)
17 COG2844 GlnD UTP:GlnB (protein 99.9 8.7E-24 1.9E-28 214.8 20.7 193 25-249 669-862 (867)
18 PRK03059 PII uridylyl-transfer 99.9 3.6E-23 7.9E-28 219.8 24.0 169 163-340 665-851 (856)
19 cd04895 ACT_ACR_1 ACT domain-c 99.8 9.4E-21 2E-25 140.8 10.2 69 269-341 2-70 (72)
20 cd04897 ACT_ACR_3 ACT domain-c 99.8 1.2E-20 2.6E-25 141.2 9.8 68 269-340 2-69 (75)
21 cd04896 ACT_ACR-like_3 ACT dom 99.8 1.7E-18 3.8E-23 129.6 9.6 69 269-340 1-69 (75)
22 cd04897 ACT_ACR_3 ACT domain-c 99.7 2.8E-17 6.2E-22 123.0 11.5 73 176-250 1-74 (75)
23 cd04896 ACT_ACR-like_3 ACT dom 99.7 2.3E-16 4.9E-21 118.2 10.8 75 177-251 1-75 (75)
24 PRK11589 gcvR glycine cleavage 99.7 8.4E-16 1.8E-20 135.7 15.1 156 174-340 6-170 (190)
25 cd04895 ACT_ACR_1 ACT domain-c 99.7 4.1E-16 8.9E-21 116.0 10.7 68 176-245 1-69 (72)
26 cd04927 ACT_ACR-like_2 Second 99.6 2.4E-15 5.1E-20 113.8 11.3 72 43-114 2-73 (76)
27 cd04900 ACT_UUR-like_1 ACT dom 99.6 2.5E-15 5.4E-20 112.7 10.7 71 42-112 2-73 (73)
28 cd04925 ACT_ACR_2 ACT domain-c 99.6 9.7E-15 2.1E-19 109.9 9.4 68 269-340 1-69 (74)
29 PRK11589 gcvR glycine cleavage 99.6 8.5E-14 1.8E-18 123.0 16.9 161 38-255 5-172 (190)
30 cd04900 ACT_UUR-like_1 ACT dom 99.6 2.2E-14 4.7E-19 107.6 10.7 71 177-248 2-73 (73)
31 cd04927 ACT_ACR-like_2 Second 99.6 3.1E-14 6.6E-19 107.7 11.4 71 178-250 2-73 (76)
32 cd04925 ACT_ACR_2 ACT domain-c 99.6 2.7E-14 5.8E-19 107.5 10.8 71 177-249 1-73 (74)
33 cd04928 ACT_TyrKc Uncharacteri 99.5 1.3E-13 2.9E-18 101.2 10.3 66 42-112 2-67 (68)
34 COG2716 GcvR Glycine cleavage 99.4 6.6E-12 1.4E-16 106.8 11.0 141 174-327 3-149 (176)
35 cd04926 ACT_ACR_4 C-terminal 99.3 1.4E-11 3.1E-16 92.0 10.3 67 42-109 2-68 (72)
36 cd04926 ACT_ACR_4 C-terminal 99.3 1.4E-11 3E-16 92.1 10.0 67 269-340 2-68 (72)
37 PRK00227 glnD PII uridylyl-tra 99.3 3E-11 6.6E-16 125.4 15.9 144 177-341 547-692 (693)
38 cd04928 ACT_TyrKc Uncharacteri 99.3 1.9E-11 4.2E-16 89.8 10.0 65 177-248 2-67 (68)
39 COG2716 GcvR Glycine cleavage 99.3 1.2E-11 2.6E-16 105.2 9.7 165 39-254 3-168 (176)
40 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 7.8E-11 1.7E-15 87.0 10.4 69 42-111 1-69 (70)
41 PRK00227 glnD PII uridylyl-tra 99.2 4.9E-10 1.1E-14 116.5 17.3 147 40-250 545-692 (693)
42 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 1.7E-10 3.8E-15 85.1 9.7 67 269-340 1-67 (70)
43 cd04898 ACT_ACR-like_4 ACT dom 99.0 3.5E-10 7.5E-15 83.0 4.3 73 269-342 1-77 (77)
44 cd04873 ACT_UUR-ACR-like ACT d 99.0 5.9E-09 1.3E-13 76.5 10.4 68 43-111 2-69 (70)
45 cd04873 ACT_UUR-ACR-like ACT d 98.9 1.5E-08 3.3E-13 74.2 9.6 66 270-340 2-67 (70)
46 PF13740 ACT_6: ACT domain; PD 98.7 1.8E-07 3.9E-12 70.5 10.3 65 41-112 2-66 (76)
47 PF13740 ACT_6: ACT domain; PD 98.7 3.1E-07 6.7E-12 69.2 10.1 64 176-247 2-65 (76)
48 cd04894 ACT_ACR-like_1 ACT dom 98.5 5.6E-07 1.2E-11 63.8 6.6 67 42-111 1-67 (69)
49 cd04893 ACT_GcvR_1 ACT domains 98.5 1.2E-06 2.6E-11 66.2 8.8 62 42-110 2-63 (77)
50 PF01842 ACT: ACT domain; Int 98.4 3.1E-06 6.7E-11 61.1 10.4 62 42-110 1-63 (66)
51 cd04870 ACT_PSP_1 CT domains f 98.4 1E-06 2.2E-11 66.2 6.7 52 270-325 1-52 (75)
52 cd04870 ACT_PSP_1 CT domains f 98.4 1.2E-06 2.6E-11 65.8 7.0 61 178-246 1-62 (75)
53 cd04893 ACT_GcvR_1 ACT domains 98.4 2.6E-06 5.6E-11 64.4 8.7 66 177-251 2-67 (77)
54 PF01842 ACT: ACT domain; Int 98.3 8E-06 1.7E-10 58.8 10.4 35 177-211 1-35 (66)
55 cd04875 ACT_F4HF-DF N-terminal 98.1 2.2E-05 4.9E-10 58.5 8.8 34 178-211 1-34 (74)
56 cd04875 ACT_F4HF-DF N-terminal 98.0 1.5E-05 3.3E-10 59.5 6.7 64 43-110 1-65 (74)
57 cd04872 ACT_1ZPV ACT domain pr 98.0 1.5E-05 3.3E-10 61.6 6.4 64 177-246 2-65 (88)
58 cd04872 ACT_1ZPV ACT domain pr 98.0 2.8E-05 6E-10 60.1 7.4 66 42-112 2-67 (88)
59 cd04869 ACT_GcvR_2 ACT domains 98.0 4.1E-05 8.9E-10 57.9 7.9 34 178-211 1-34 (81)
60 COG4747 ACT domain-containing 98.0 0.001 2.3E-08 53.5 15.8 112 43-224 5-116 (142)
61 PRK00194 hypothetical protein; 97.9 3.6E-05 7.9E-10 59.6 7.4 65 41-110 3-67 (90)
62 cd04869 ACT_GcvR_2 ACT domains 97.9 8.8E-05 1.9E-09 56.0 9.1 63 43-110 1-68 (81)
63 PRK00194 hypothetical protein; 97.9 4.4E-05 9.6E-10 59.1 7.3 69 176-251 3-71 (90)
64 COG4747 ACT domain-containing 97.8 0.00019 4.1E-09 57.7 9.8 99 178-302 5-103 (142)
65 PRK13011 formyltetrahydrofolat 97.8 0.00051 1.1E-08 64.8 13.3 72 176-254 7-79 (286)
66 PRK06027 purU formyltetrahydro 97.8 0.00088 1.9E-08 63.3 14.8 75 175-254 5-79 (286)
67 cd04894 ACT_ACR-like_1 ACT dom 97.7 0.00014 3.1E-09 51.7 6.9 67 177-247 1-67 (69)
68 TIGR00655 PurU formyltetrahydr 97.7 0.00087 1.9E-08 63.1 14.4 107 178-294 2-110 (280)
69 PF13291 ACT_4: ACT domain; PD 97.7 0.00032 6.8E-09 53.0 9.4 64 176-244 6-69 (80)
70 PF13291 ACT_4: ACT domain; PD 97.7 0.00035 7.6E-09 52.7 9.2 49 42-90 7-56 (80)
71 PRK06027 purU formyltetrahydro 97.7 0.0015 3.2E-08 61.7 14.9 68 39-111 4-73 (286)
72 PRK13010 purU formyltetrahydro 97.6 0.0012 2.7E-08 62.3 13.8 36 175-210 8-43 (289)
73 COG3830 ACT domain-containing 97.6 7.1E-05 1.5E-09 57.5 4.4 33 176-208 3-35 (90)
74 cd04887 ACT_MalLac-Enz ACT_Mal 97.6 0.00076 1.6E-08 49.8 9.6 62 44-110 2-63 (74)
75 PRK13010 purU formyltetrahydro 97.5 0.0023 4.9E-08 60.5 14.0 66 41-110 9-76 (289)
76 cd04887 ACT_MalLac-Enz ACT_Mal 97.5 0.0012 2.5E-08 48.8 9.7 60 179-244 2-61 (74)
77 TIGR00655 PurU formyltetrahydr 97.5 0.0041 8.8E-08 58.6 15.5 64 43-110 2-66 (280)
78 PRK13011 formyltetrahydrofolat 97.5 0.0057 1.2E-07 57.8 15.6 66 41-111 7-73 (286)
79 COG3830 ACT domain-containing 97.3 0.00032 7E-09 53.9 4.6 67 41-112 3-69 (90)
80 COG0788 PurU Formyltetrahydrof 97.3 0.0012 2.5E-08 60.7 8.7 37 175-211 6-42 (287)
81 cd04889 ACT_PDH-BS-like C-term 97.1 0.0019 4.2E-08 45.1 6.7 47 44-90 1-47 (56)
82 COG0788 PurU Formyltetrahydrof 97.1 0.0026 5.6E-08 58.5 9.1 67 40-110 6-73 (287)
83 cd04886 ACT_ThrD-II-like C-ter 97.1 0.0048 1E-07 44.6 9.1 62 44-110 1-66 (73)
84 PRK06737 acetolactate synthase 97.1 0.0034 7.4E-08 47.2 8.2 64 177-246 3-66 (76)
85 PRK13562 acetolactate synthase 97.1 0.0029 6.3E-08 48.3 7.7 63 178-246 4-67 (84)
86 PRK08178 acetolactate synthase 97.0 0.0042 9.2E-08 48.6 8.1 36 175-210 7-42 (96)
87 PRK08178 acetolactate synthase 97.0 0.0059 1.3E-07 47.8 8.9 68 37-111 4-72 (96)
88 CHL00100 ilvH acetohydroxyacid 97.0 0.0053 1.2E-07 53.6 9.6 66 177-248 3-68 (174)
89 cd04886 ACT_ThrD-II-like C-ter 97.0 0.0072 1.6E-07 43.6 8.9 32 179-210 1-32 (73)
90 cd04909 ACT_PDH-BS C-terminal 97.0 0.0079 1.7E-07 43.7 8.9 48 42-89 2-50 (69)
91 PRK06737 acetolactate synthase 97.0 0.0071 1.5E-07 45.5 8.4 63 42-110 3-66 (76)
92 cd04878 ACT_AHAS N-terminal AC 96.9 0.0075 1.6E-07 43.4 8.5 42 270-313 2-44 (72)
93 cd04908 ACT_Bt0572_1 N-termina 96.9 0.0059 1.3E-07 44.3 7.7 37 270-308 3-39 (66)
94 cd04889 ACT_PDH-BS-like C-term 96.9 0.0036 7.9E-08 43.7 6.3 46 179-225 1-46 (56)
95 cd04879 ACT_3PGDH-like ACT_3PG 96.9 0.0051 1.1E-07 44.1 7.3 32 271-302 2-33 (71)
96 TIGR00119 acolac_sm acetolacta 96.9 0.0083 1.8E-07 51.5 9.5 64 43-112 3-67 (157)
97 cd04877 ACT_TyrR N-terminal AC 96.9 0.0092 2E-07 44.3 8.4 35 43-77 2-36 (74)
98 TIGR00119 acolac_sm acetolacta 96.8 0.0097 2.1E-07 51.1 9.5 64 177-247 2-66 (157)
99 PRK11895 ilvH acetolactate syn 96.8 0.011 2.5E-07 50.9 9.8 65 177-248 3-68 (161)
100 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.8 0.0096 2.1E-07 43.7 8.3 33 270-302 2-34 (79)
101 cd04888 ACT_PheB-BS C-terminal 96.8 0.013 2.8E-07 43.3 9.0 48 43-90 2-49 (76)
102 PRK11895 ilvH acetolactate syn 96.8 0.011 2.4E-07 51.0 9.6 65 42-112 3-68 (161)
103 cd04888 ACT_PheB-BS C-terminal 96.8 0.011 2.4E-07 43.6 8.6 61 178-244 2-63 (76)
104 cd04905 ACT_CM-PDT C-terminal 96.8 0.0082 1.8E-07 45.3 8.0 49 270-321 3-51 (80)
105 cd04877 ACT_TyrR N-terminal AC 96.7 0.013 2.8E-07 43.5 8.5 33 178-210 2-34 (74)
106 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.7 0.014 3E-07 42.8 8.6 46 43-88 2-48 (79)
107 PRK11152 ilvM acetolactate syn 96.7 0.012 2.5E-07 44.3 8.0 63 177-246 4-66 (76)
108 cd04908 ACT_Bt0572_1 N-termina 96.7 0.017 3.6E-07 41.8 8.8 38 42-79 2-39 (66)
109 cd04874 ACT_Af1403 N-terminal 96.7 0.017 3.6E-07 41.7 8.7 47 43-89 2-48 (72)
110 PRK07431 aspartate kinase; Pro 96.7 0.26 5.5E-06 51.3 20.6 201 38-300 345-554 (587)
111 PRK13562 acetolactate synthase 96.7 0.012 2.7E-07 44.9 7.9 64 43-111 4-68 (84)
112 PRK08577 hypothetical protein; 96.7 0.035 7.5E-07 46.4 11.6 54 172-225 52-105 (136)
113 cd04903 ACT_LSD C-terminal ACT 96.7 0.013 2.8E-07 42.1 7.8 32 271-302 2-33 (71)
114 cd04878 ACT_AHAS N-terminal AC 96.6 0.024 5.2E-07 40.7 9.1 62 43-110 2-64 (72)
115 cd04909 ACT_PDH-BS C-terminal 96.5 0.029 6.3E-07 40.7 9.1 35 177-211 2-36 (69)
116 cd04905 ACT_CM-PDT C-terminal 96.5 0.033 7.1E-07 41.9 9.4 51 177-229 2-53 (80)
117 PRK11152 ilvM acetolactate syn 96.5 0.024 5.1E-07 42.7 8.4 62 42-110 4-66 (76)
118 cd04882 ACT_Bt0572_2 C-termina 96.4 0.012 2.7E-07 41.8 6.5 32 271-302 2-33 (65)
119 CHL00100 ilvH acetohydroxyacid 96.4 0.024 5.1E-07 49.6 9.1 65 42-112 3-68 (174)
120 cd04879 ACT_3PGDH-like ACT_3PG 96.4 0.015 3.3E-07 41.5 6.9 46 44-89 2-48 (71)
121 cd04902 ACT_3PGDH-xct C-termin 96.4 0.019 4.1E-07 41.8 7.4 47 44-90 2-49 (73)
122 cd04903 ACT_LSD C-terminal ACT 96.4 0.031 6.7E-07 40.0 8.4 47 44-90 2-49 (71)
123 cd04882 ACT_Bt0572_2 C-termina 96.3 0.023 5.1E-07 40.3 7.5 46 44-89 2-48 (65)
124 cd04884 ACT_CBS C-terminal ACT 96.3 0.032 6.8E-07 41.0 8.1 46 44-89 2-49 (72)
125 cd04901 ACT_3PGDH C-terminal A 96.3 0.005 1.1E-07 44.6 3.7 38 271-310 2-39 (69)
126 cd04876 ACT_RelA-SpoT ACT dom 96.3 0.048 1E-06 38.0 8.8 46 44-89 1-46 (71)
127 PRK04435 hypothetical protein; 96.2 0.066 1.4E-06 45.5 10.8 55 36-90 64-118 (147)
128 PRK08577 hypothetical protein; 96.2 0.066 1.4E-06 44.8 10.6 69 38-110 53-122 (136)
129 cd04880 ACT_AAAH-PDT-like ACT 96.1 0.03 6.5E-07 41.5 7.2 46 272-320 3-48 (75)
130 PRK07431 aspartate kinase; Pro 96.1 2.2 4.7E-05 44.4 24.2 114 175-302 347-474 (587)
131 cd02116 ACT ACT domains are co 96.1 0.054 1.2E-06 35.7 7.9 34 44-77 1-34 (60)
132 PRK04435 hypothetical protein; 96.1 0.066 1.4E-06 45.5 10.0 71 169-244 62-132 (147)
133 cd04902 ACT_3PGDH-xct C-termin 96.1 0.017 3.7E-07 42.1 5.6 47 179-225 2-48 (73)
134 cd02116 ACT ACT domains are co 96.0 0.044 9.6E-07 36.2 7.2 32 271-302 1-32 (60)
135 cd04898 ACT_ACR-like_4 ACT dom 96.0 0.013 2.7E-07 43.5 4.4 70 179-248 3-74 (77)
136 cd04874 ACT_Af1403 N-terminal 95.8 0.051 1.1E-06 39.0 7.2 33 178-210 2-34 (72)
137 cd04876 ACT_RelA-SpoT ACT dom 95.8 0.086 1.9E-06 36.7 8.2 35 271-307 1-35 (71)
138 cd04901 ACT_3PGDH C-terminal A 95.7 0.016 3.4E-07 41.9 4.1 45 44-89 2-46 (69)
139 PRK06635 aspartate kinase; Rev 95.7 1.4 3.1E-05 43.4 19.3 111 39-207 260-374 (404)
140 cd04931 ACT_PAH ACT domain of 95.6 0.081 1.8E-06 41.1 8.0 67 270-341 16-84 (90)
141 cd04883 ACT_AcuB C-terminal AC 95.6 0.069 1.5E-06 38.8 7.2 49 177-225 2-50 (72)
142 PF13710 ACT_5: ACT domain; PD 95.5 0.053 1.2E-06 39.1 6.2 56 185-246 1-56 (63)
143 cd04883 ACT_AcuB C-terminal AC 95.4 0.11 2.3E-06 37.8 7.7 48 42-89 2-50 (72)
144 cd04884 ACT_CBS C-terminal ACT 95.4 0.048 1.1E-06 40.0 5.8 32 271-302 2-33 (72)
145 cd04931 ACT_PAH ACT domain of 95.3 0.22 4.8E-06 38.7 9.5 71 173-248 11-82 (90)
146 TIGR00719 sda_beta L-serine de 95.2 0.1 2.2E-06 46.9 8.5 53 173-225 145-197 (208)
147 cd04880 ACT_AAAH-PDT-like ACT 95.1 0.23 4.9E-06 36.7 8.8 63 179-245 2-65 (75)
148 PRK07334 threonine dehydratase 95.1 0.16 3.4E-06 50.3 10.2 65 41-110 326-394 (403)
149 cd04904 ACT_AAAH ACT domain of 95.1 0.082 1.8E-06 39.3 6.2 49 271-323 3-51 (74)
150 cd04929 ACT_TPH ACT domain of 95.1 0.08 1.7E-06 39.6 6.1 51 271-325 3-53 (74)
151 PRK07334 threonine dehydratase 95.1 0.17 3.7E-06 50.1 10.3 66 176-246 326-394 (403)
152 PF13710 ACT_5: ACT domain; PD 95.0 0.11 2.4E-06 37.5 6.6 55 50-110 1-56 (63)
153 PRK06635 aspartate kinase; Rev 94.9 0.36 7.8E-06 47.7 12.2 107 176-300 262-375 (404)
154 PRK10872 relA (p)ppGpp synthet 94.8 0.22 4.8E-06 52.9 10.8 65 175-244 665-729 (743)
155 cd04871 ACT_PSP_2 ACT domains 94.8 0.025 5.5E-07 43.3 2.8 60 43-110 1-71 (84)
156 TIGR00719 sda_beta L-serine de 94.6 0.13 2.9E-06 46.2 7.4 54 270-329 150-203 (208)
157 TIGR00656 asp_kin_monofn aspar 94.6 4.7 0.0001 39.8 19.0 107 39-206 258-370 (401)
158 COG1707 ACT domain-containing 94.3 0.16 3.4E-06 43.7 6.6 42 178-219 4-45 (218)
159 PRK10872 relA (p)ppGpp synthet 94.2 0.36 7.8E-06 51.3 10.6 65 41-110 666-731 (743)
160 PRK11092 bifunctional (p)ppGpp 94.1 0.39 8.4E-06 51.0 10.6 65 41-110 626-690 (702)
161 TIGR00656 asp_kin_monofn aspar 94.0 1.4 3.1E-05 43.4 14.1 105 175-299 259-371 (401)
162 PRK11092 bifunctional (p)ppGpp 94.0 0.44 9.6E-06 50.5 10.8 64 175-244 625-688 (702)
163 cd04904 ACT_AAAH ACT domain of 93.8 0.45 9.8E-06 35.3 7.8 48 179-228 3-51 (74)
164 PRK11899 prephenate dehydratas 93.7 0.24 5.2E-06 46.6 7.5 53 269-325 195-247 (279)
165 COG1707 ACT domain-containing 93.6 0.27 5.8E-06 42.3 6.8 40 42-81 3-42 (218)
166 TIGR00691 spoT_relA (p)ppGpp s 93.3 0.72 1.6E-05 48.9 11.0 64 175-244 609-672 (683)
167 PRK06291 aspartate kinase; Pro 93.3 1.9 4E-05 43.6 13.6 109 175-301 320-434 (465)
168 TIGR00691 spoT_relA (p)ppGpp s 93.2 0.65 1.4E-05 49.2 10.5 49 41-89 610-658 (683)
169 cd04871 ACT_PSP_2 ACT domains 93.1 0.057 1.2E-06 41.3 1.9 30 178-207 1-31 (84)
170 cd04930 ACT_TH ACT domain of t 93.1 0.26 5.6E-06 40.1 5.7 51 270-324 43-93 (115)
171 PRK11899 prephenate dehydratas 93.1 0.69 1.5E-05 43.6 9.4 52 176-229 194-246 (279)
172 cd04885 ACT_ThrD-I Tandem C-te 93.0 0.83 1.8E-05 33.1 7.9 30 44-74 1-30 (68)
173 PRK11790 D-3-phosphoglycerate 92.7 0.18 3.9E-06 50.1 5.3 60 269-337 339-398 (409)
174 PRK06291 aspartate kinase; Pro 92.6 13 0.00028 37.6 18.9 107 39-206 319-431 (465)
175 PRK08210 aspartate kinase I; R 92.5 3.5 7.6E-05 40.8 14.1 99 175-298 270-372 (403)
176 PRK06382 threonine dehydratase 92.2 1.1 2.4E-05 44.5 10.0 71 35-110 324-398 (406)
177 COG0077 PheA Prephenate dehydr 92.0 0.59 1.3E-05 43.8 7.4 56 268-327 194-249 (279)
178 PF13840 ACT_7: ACT domain ; P 92.0 0.94 2E-05 32.7 7.0 35 39-73 4-42 (65)
179 PRK11790 D-3-phosphoglycerate 91.9 0.5 1.1E-05 47.0 7.3 51 38-89 335-385 (409)
180 COG0317 SpoT Guanosine polypho 91.9 0.85 1.8E-05 48.0 9.2 59 31-89 617-675 (701)
181 PLN02551 aspartokinase 91.8 3.9 8.6E-05 42.0 13.8 110 174-302 364-481 (521)
182 COG0317 SpoT Guanosine polypho 91.7 1.1 2.4E-05 47.2 9.8 46 166-211 616-662 (701)
183 cd04929 ACT_TPH ACT domain of 91.4 1.7 3.7E-05 32.3 8.1 49 179-229 3-52 (74)
184 PRK08210 aspartate kinase I; R 91.3 16 0.00035 36.1 18.4 34 39-72 269-303 (403)
185 cd04930 ACT_TH ACT domain of t 90.6 1.7 3.7E-05 35.3 7.9 51 176-228 41-92 (115)
186 COG0527 LysC Aspartokinases [A 90.6 21 0.00045 36.0 19.6 109 174-302 305-420 (447)
187 cd04906 ACT_ThrD-I_1 First of 90.6 2.7 6E-05 31.9 8.7 62 43-110 3-64 (85)
188 PRK09034 aspartate kinase; Rev 90.4 5.9 0.00013 40.0 13.4 138 175-341 307-450 (454)
189 COG0077 PheA Prephenate dehydr 90.4 1.4 3E-05 41.4 8.2 53 175-229 193-246 (279)
190 cd04885 ACT_ThrD-I Tandem C-te 90.3 1.3 2.8E-05 32.0 6.4 59 272-340 2-60 (68)
191 PLN02551 aspartokinase 90.3 24 0.00052 36.3 17.8 111 38-207 363-478 (521)
192 PRK13581 D-3-phosphoglycerate 90.0 0.79 1.7E-05 47.1 6.9 51 175-225 451-501 (526)
193 PRK09436 thrA bifunctional asp 89.9 4.9 0.00011 43.7 13.0 110 174-300 313-431 (819)
194 COG0440 IlvH Acetolactate synt 89.8 1.2 2.6E-05 38.4 6.6 66 177-249 5-71 (163)
195 PRK10622 pheA bifunctional cho 89.3 1.3 2.9E-05 43.6 7.6 53 269-325 298-350 (386)
196 PRK09181 aspartate kinase; Val 89.3 26 0.00056 35.6 16.9 102 40-206 328-434 (475)
197 PF13840 ACT_7: ACT domain ; P 89.2 0.47 1E-05 34.3 3.3 34 175-208 5-42 (65)
198 TIGR01327 PGDH D-3-phosphoglyc 89.2 0.71 1.5E-05 47.4 5.8 51 175-225 450-500 (525)
199 PRK06545 prephenate dehydrogen 89.1 1.3 2.9E-05 43.1 7.4 37 174-210 288-324 (359)
200 PRK09084 aspartate kinase III; 89.1 11 0.00023 38.0 14.0 104 174-294 304-413 (448)
201 COG0440 IlvH Acetolactate synt 88.9 2.3 5.1E-05 36.6 7.7 66 41-112 4-70 (163)
202 PRK09181 aspartate kinase; Val 88.8 11 0.00023 38.4 13.7 106 175-302 328-438 (475)
203 TIGR00657 asp_kinases aspartat 88.5 16 0.00035 36.5 14.9 105 175-300 301-413 (441)
204 PRK10622 pheA bifunctional cho 88.4 2.9 6.2E-05 41.3 9.2 53 175-229 296-349 (386)
205 PRK06349 homoserine dehydrogen 88.2 2.2 4.8E-05 42.6 8.4 50 268-321 348-397 (426)
206 PRK06382 threonine dehydratase 88.1 3.5 7.7E-05 40.8 9.7 67 174-245 328-397 (406)
207 TIGR01327 PGDH D-3-phosphoglyc 87.9 0.97 2.1E-05 46.4 5.8 61 270-337 453-513 (525)
208 PRK13581 D-3-phosphoglycerate 87.8 1.3 2.8E-05 45.5 6.7 61 270-337 454-514 (526)
209 PRK08198 threonine dehydratase 87.2 6 0.00013 39.1 10.8 56 20-75 301-361 (404)
210 cd04906 ACT_ThrD-I_1 First of 87.2 6 0.00013 30.0 8.5 62 178-246 3-64 (85)
211 TIGR01127 ilvA_1Cterm threonin 86.3 6.5 0.00014 38.5 10.4 87 19-110 278-373 (380)
212 PRK08818 prephenate dehydrogen 86.3 1.5 3.3E-05 42.9 5.9 48 269-321 296-344 (370)
213 TIGR01127 ilvA_1Cterm threonin 86.0 6.1 0.00013 38.6 10.1 66 175-245 304-372 (380)
214 PRK09436 thrA bifunctional asp 86.0 57 0.0012 35.6 18.7 113 38-207 312-430 (819)
215 PRK09034 aspartate kinase; Rev 84.8 47 0.001 33.5 18.1 33 175-207 384-419 (454)
216 PRK08818 prephenate dehydrogen 84.5 2.2 4.8E-05 41.8 6.1 48 175-225 294-342 (370)
217 KOG2663 Acetolactate synthase, 84.4 1.6 3.5E-05 40.1 4.6 38 40-77 76-113 (309)
218 PF05088 Bac_GDH: Bacterial NA 84.0 8.7 0.00019 44.3 11.1 99 16-114 463-567 (1528)
219 PRK08198 threonine dehydratase 83.9 10 0.00022 37.5 10.6 37 174-210 325-361 (404)
220 cd04935 ACT_AKiii-DAPDC_1 ACT 83.7 14 0.00031 27.3 8.9 56 49-110 12-67 (75)
221 cd04891 ACT_AK-LysC-DapG-like_ 83.5 5.7 0.00012 26.8 6.4 46 44-89 3-49 (61)
222 PRK09084 aspartate kinase III; 83.5 39 0.00085 34.0 14.7 32 39-70 304-338 (448)
223 COG2150 Predicted regulator of 82.3 4.3 9.4E-05 34.8 6.1 31 178-208 95-127 (167)
224 cd04913 ACT_AKii-LysC-BS-like_ 82.3 14 0.0003 26.1 8.3 30 43-72 3-33 (75)
225 cd04932 ACT_AKiii-LysC-EC_1 AC 82.1 13 0.00029 27.5 8.1 24 183-206 11-34 (75)
226 cd04932 ACT_AKiii-LysC-EC_1 AC 81.9 12 0.00025 27.8 7.8 32 270-301 3-37 (75)
227 COG2150 Predicted regulator of 81.8 2.6 5.6E-05 36.1 4.6 40 35-76 89-128 (167)
228 TIGR00657 asp_kinases aspartat 81.8 59 0.0013 32.5 19.3 33 175-207 377-412 (441)
229 COG4492 PheB ACT domain-contai 81.0 11 0.00023 31.4 7.7 51 174-225 70-120 (150)
230 PRK06545 prephenate dehydrogen 81.0 2.6 5.6E-05 41.0 5.0 41 38-78 287-327 (359)
231 PLN02317 arogenate dehydratase 80.6 11 0.00024 37.1 9.2 37 176-214 283-319 (382)
232 cd04912 ACT_AKiii-LysC-EC-like 80.6 15 0.00033 26.9 8.1 29 178-206 3-34 (75)
233 cd04890 ACT_AK-like_1 ACT doma 80.2 13 0.00028 25.9 7.2 51 276-339 11-61 (62)
234 KOG2663 Acetolactate synthase, 78.9 2.1 4.6E-05 39.3 3.4 36 175-210 76-111 (309)
235 cd04935 ACT_AKiii-DAPDC_1 ACT 78.7 17 0.00036 26.9 7.7 56 184-246 12-67 (75)
236 cd04912 ACT_AKiii-LysC-EC-like 78.2 22 0.00048 26.0 8.3 63 42-110 2-67 (75)
237 TIGR01270 Trp_5_monoox tryptop 77.8 5.1 0.00011 40.2 6.0 53 270-325 33-85 (464)
238 PRK11898 prephenate dehydratas 77.5 8.4 0.00018 36.3 7.1 52 270-325 198-250 (283)
239 TIGR01270 Trp_5_monoox tryptop 77.2 9.1 0.0002 38.5 7.5 55 172-228 27-83 (464)
240 PRK10820 DNA-binding transcrip 77.0 5.5 0.00012 40.9 6.2 33 270-302 2-34 (520)
241 PRK09466 metL bifunctional asp 76.8 52 0.0011 35.8 13.7 106 174-300 315-426 (810)
242 cd04922 ACT_AKi-HSDH-ThrA_2 AC 76.6 22 0.00048 24.6 8.8 30 178-207 3-35 (66)
243 PRK14646 hypothetical protein; 76.0 43 0.00093 28.6 10.5 91 188-295 8-102 (155)
244 PRK11898 prephenate dehydratas 75.6 19 0.0004 34.0 8.9 53 175-229 195-249 (283)
245 cd04937 ACT_AKi-DapG-BS_2 ACT 75.5 25 0.00055 24.7 8.2 29 42-70 2-33 (64)
246 PRK08961 bifunctional aspartat 75.3 56 0.0012 35.8 13.7 104 174-296 320-429 (861)
247 PRK14634 hypothetical protein; 75.2 44 0.00096 28.5 10.4 78 187-279 7-88 (155)
248 PLN02317 arogenate dehydratase 73.7 13 0.00028 36.6 7.5 34 269-302 284-317 (382)
249 TIGR01268 Phe4hydrox_tetr phen 73.4 8.6 0.00019 38.5 6.2 52 270-325 18-69 (436)
250 cd04890 ACT_AK-like_1 ACT doma 73.4 19 0.00041 25.0 6.6 37 49-90 11-47 (62)
251 COG3978 Acetolactate synthase 73.4 32 0.0007 26.0 7.7 66 41-113 3-69 (86)
252 PRK14645 hypothetical protein; 73.1 58 0.0013 27.8 10.5 91 186-293 8-102 (154)
253 cd04937 ACT_AKi-DapG-BS_2 ACT 73.1 30 0.00064 24.4 8.6 28 178-205 3-33 (64)
254 COG4492 PheB ACT domain-contai 73.1 27 0.00059 29.1 8.0 55 36-90 67-121 (150)
255 cd04868 ACT_AK-like ACT domain 72.6 8.1 0.00018 25.7 4.4 33 270-302 2-37 (60)
256 cd04919 ACT_AK-Hom3_2 ACT doma 71.8 31 0.00067 24.0 8.9 30 178-207 3-35 (66)
257 PRK06349 homoserine dehydrogen 71.0 25 0.00054 35.1 9.0 51 39-90 346-396 (426)
258 PRK09224 threonine dehydratase 69.8 89 0.0019 32.0 12.9 149 19-209 301-455 (504)
259 cd04913 ACT_AKii-LysC-BS-like_ 69.5 6.6 0.00014 27.9 3.5 28 275-302 9-36 (75)
260 cd04933 ACT_AK1-AT_1 ACT domai 69.4 42 0.00092 25.1 7.9 43 43-90 3-48 (78)
261 TIGR01268 Phe4hydrox_tetr phen 69.1 29 0.00064 34.7 8.8 52 176-229 16-68 (436)
262 cd04891 ACT_AK-LysC-DapG-like_ 68.8 7.7 0.00017 26.2 3.6 28 275-302 8-35 (61)
263 PRK08841 aspartate kinase; Val 68.7 41 0.00089 33.2 9.9 94 175-300 257-350 (392)
264 COG0527 LysC Aspartokinases [A 68.4 1.4E+02 0.003 30.2 18.8 109 38-208 304-418 (447)
265 PRK14636 hypothetical protein; 68.0 70 0.0015 27.9 10.1 61 186-250 4-66 (176)
266 COG3283 TyrR Transcriptional r 68.0 14 0.0003 36.3 6.1 59 270-341 2-60 (511)
267 COG3978 Acetolactate synthase 67.4 52 0.0011 24.9 8.1 66 176-248 3-68 (86)
268 PRK08961 bifunctional aspartat 65.5 1.3E+02 0.0028 33.0 13.8 37 39-77 320-359 (861)
269 PRK08526 threonine dehydratase 65.3 50 0.0011 32.7 9.8 37 173-209 323-359 (403)
270 COG3603 Uncharacterized conser 65.1 18 0.00039 29.5 5.3 67 9-80 34-103 (128)
271 cd04922 ACT_AKi-HSDH-ThrA_2 AC 64.9 43 0.00094 23.1 8.4 30 43-72 3-35 (66)
272 cd04868 ACT_AK-like ACT domain 63.4 12 0.00025 24.9 3.6 29 179-207 3-34 (60)
273 PRK14630 hypothetical protein; 62.5 81 0.0018 26.5 9.2 61 184-250 5-67 (143)
274 PRK08526 threonine dehydratase 62.1 59 0.0013 32.2 9.6 85 21-110 301-394 (403)
275 PRK14633 hypothetical protein; 62.1 85 0.0018 26.6 9.3 87 189-294 6-95 (150)
276 PRK00092 ribosome maturation p 61.8 81 0.0017 26.7 9.2 56 189-250 9-66 (154)
277 cd04892 ACT_AK-like_2 ACT doma 61.8 18 0.00039 24.5 4.4 33 270-302 2-37 (65)
278 PRK14640 hypothetical protein; 61.3 83 0.0018 26.7 9.1 90 188-296 7-100 (152)
279 PRK14647 hypothetical protein; 61.2 86 0.0019 26.8 9.3 56 189-250 10-67 (159)
280 PRK14638 hypothetical protein; 60.2 1.1E+02 0.0023 26.0 10.5 57 189-250 10-68 (150)
281 cd04924 ACT_AK-Arch_2 ACT doma 59.4 55 0.0012 22.5 8.9 31 178-208 3-36 (66)
282 cd04934 ACT_AK-Hom3_1 CT domai 58.5 47 0.001 24.3 6.3 54 184-246 12-65 (73)
283 TIGR02079 THD1 threonine dehyd 58.4 91 0.002 30.9 10.3 54 21-74 300-358 (409)
284 PRK14639 hypothetical protein; 56.7 1.2E+02 0.0026 25.4 9.7 54 193-250 3-56 (140)
285 cd04919 ACT_AK-Hom3_2 ACT doma 56.7 64 0.0014 22.3 8.5 31 42-72 2-35 (66)
286 cd04934 ACT_AK-Hom3_1 CT domai 56.1 73 0.0016 23.3 7.0 54 49-110 12-65 (73)
287 cd04933 ACT_AK1-AT_1 ACT domai 55.8 23 0.00049 26.6 4.2 26 275-300 11-36 (78)
288 PRK08639 threonine dehydratase 53.6 83 0.0018 31.3 9.1 54 21-74 311-369 (420)
289 PRK09466 metL bifunctional asp 52.6 2.7E+02 0.0059 30.4 13.3 31 175-205 390-423 (810)
290 PF05088 Bac_GDH: Bacterial NA 52.4 1.6E+02 0.0035 34.4 12.0 209 37-252 337-569 (1528)
291 TIGR01124 ilvA_2Cterm threonin 52.3 67 0.0014 32.9 8.3 85 19-110 298-387 (499)
292 cd04923 ACT_AK-LysC-DapG-like_ 52.3 71 0.0015 21.6 8.4 30 43-72 2-34 (63)
293 PTZ00324 glutamate dehydrogena 52.0 60 0.0013 36.0 8.2 46 49-94 241-286 (1002)
294 cd04936 ACT_AKii-LysC-BS-like_ 51.8 36 0.00078 23.1 4.6 31 271-301 3-36 (63)
295 PRK06423 phosphoribosylformylg 51.2 49 0.0011 24.3 5.4 50 277-343 9-63 (73)
296 cd04914 ACT_AKi-DapG-BS_1 ACT 51.0 26 0.00057 25.1 3.8 31 42-72 2-33 (67)
297 cd04920 ACT_AKiii-DAPDC_2 ACT 51.0 84 0.0018 22.0 7.0 28 178-205 2-32 (63)
298 cd04924 ACT_AK-Arch_2 ACT doma 50.9 78 0.0017 21.7 8.5 31 42-72 2-35 (66)
299 PLN02550 threonine dehydratase 50.8 2.8E+02 0.006 29.1 12.6 117 175-302 416-545 (591)
300 cd04918 ACT_AK1-AT_2 ACT domai 50.1 88 0.0019 22.0 8.5 31 178-208 3-35 (65)
301 PRK14632 hypothetical protein; 50.1 1.6E+02 0.0034 25.6 9.2 56 189-250 10-66 (172)
302 cd04916 ACT_AKiii-YclM-BS_2 AC 50.0 82 0.0018 21.6 8.8 31 178-208 3-36 (66)
303 cd04936 ACT_AKii-LysC-BS-like_ 49.4 79 0.0017 21.3 8.4 30 43-72 2-34 (63)
304 TIGR02079 THD1 threonine dehyd 48.5 1.6E+02 0.0035 29.2 10.2 67 174-246 323-390 (409)
305 KOG0456 Aspartate kinase [Amin 48.0 37 0.0008 33.6 5.3 120 176-321 393-520 (559)
306 PRK14631 hypothetical protein; 47.5 1.9E+02 0.0042 25.2 10.6 92 188-295 9-119 (174)
307 PRK10820 DNA-binding transcrip 47.5 29 0.00063 35.6 4.9 33 178-210 2-34 (520)
308 PF02576 DUF150: Uncharacteris 47.0 1.3E+02 0.0027 25.0 7.9 53 193-250 2-55 (141)
309 cd04892 ACT_AK-like_2 ACT doma 46.3 87 0.0019 20.9 8.0 30 43-72 2-34 (65)
310 cd04916 ACT_AKiii-YclM-BS_2 AC 45.1 99 0.0021 21.2 8.3 30 43-72 3-35 (66)
311 cd04923 ACT_AK-LysC-DapG-like_ 43.8 99 0.0021 20.8 8.6 29 179-207 3-34 (63)
312 cd04911 ACT_AKiii-YclM-BS_1 AC 43.7 73 0.0016 23.9 5.2 55 185-248 13-67 (76)
313 cd07253 Glo_EDI_BRP_like_2 Thi 43.1 48 0.001 25.5 4.6 42 282-327 79-121 (125)
314 PRK12483 threonine dehydratase 41.8 4.1E+02 0.0089 27.4 15.7 125 174-313 343-482 (521)
315 cd04918 ACT_AK1-AT_2 ACT domai 41.5 1.2E+02 0.0027 21.2 8.3 31 43-73 3-35 (65)
316 PLN02550 threonine dehydratase 41.4 4.5E+02 0.0097 27.7 16.6 85 19-110 390-479 (591)
317 cd07247 SgaA_N_like N-terminal 41.1 71 0.0015 24.4 5.3 48 270-327 64-111 (114)
318 PRK08639 threonine dehydratase 40.7 2.4E+02 0.0052 28.0 10.1 36 173-208 333-368 (420)
319 cd04914 ACT_AKi-DapG-BS_1 ACT 39.8 48 0.001 23.7 3.7 30 178-207 3-33 (67)
320 PRK12483 threonine dehydratase 39.4 4.5E+02 0.0097 27.1 16.9 54 21-76 320-378 (521)
321 PRK09224 threonine dehydratase 39.3 4.4E+02 0.0095 27.0 14.7 125 175-313 327-465 (504)
322 cd04911 ACT_AKiii-YclM-BS_1 AC 39.0 1.5E+02 0.0033 22.1 6.3 57 49-113 12-68 (76)
323 cd04920 ACT_AKiii-DAPDC_2 ACT 38.7 60 0.0013 22.8 4.1 28 270-297 2-32 (63)
324 PF04083 Abhydro_lipase: Parti 38.1 98 0.0021 22.1 5.0 32 59-91 2-33 (63)
325 PF00903 Glyoxalase: Glyoxalas 37.7 59 0.0013 25.0 4.4 48 273-326 79-126 (128)
326 PRK05925 aspartate kinase; Pro 37.6 4.4E+02 0.0095 26.5 13.3 104 175-299 299-405 (440)
327 cd04921 ACT_AKi-HSDH-ThrA-like 36.2 1.6E+02 0.0035 21.1 8.7 32 42-73 2-36 (80)
328 cd04921 ACT_AKi-HSDH-ThrA-like 35.9 1.7E+02 0.0036 21.1 9.1 30 178-207 3-35 (80)
329 COG0779 Uncharacterized protei 35.8 2.8E+02 0.006 23.7 9.8 79 187-281 8-89 (153)
330 PRK05974 phosphoribosylformylg 35.4 1.9E+02 0.0041 21.6 6.7 57 275-343 7-69 (80)
331 PRK14643 hypothetical protein; 34.9 3E+02 0.0064 23.7 10.3 92 188-296 10-107 (164)
332 cd04915 ACT_AK-Ectoine_2 ACT d 32.5 1.8E+02 0.0039 20.5 7.8 30 178-207 4-35 (66)
333 cd07245 Glo_EDI_BRP_like_9 Thi 32.1 89 0.0019 23.2 4.5 46 271-327 68-113 (114)
334 PRK08841 aspartate kinase; Val 31.1 2.5E+02 0.0054 27.7 8.4 33 38-70 315-347 (392)
335 cd08357 Glo_EDI_BRP_like_18 Th 31.0 60 0.0013 25.1 3.4 43 281-327 77-121 (125)
336 PF00585 Thr_dehydrat_C: C-ter 30.8 71 0.0015 24.5 3.6 63 41-110 10-73 (91)
337 PRK00907 hypothetical protein; 29.5 2.7E+02 0.0058 21.6 7.1 51 176-226 17-69 (92)
338 PRK04460 nickel responsive reg 28.9 3.4E+02 0.0075 22.6 9.5 74 31-110 45-118 (137)
339 COG2061 ACT-domain-containing 27.8 84 0.0018 26.9 3.7 37 39-76 3-39 (170)
340 TIGR01124 ilvA_2Cterm threonin 27.5 5E+02 0.011 26.5 10.1 116 174-302 323-452 (499)
341 COG1828 PurS Phosphoribosylfor 26.5 2.9E+02 0.0064 21.0 6.3 60 272-343 5-70 (83)
342 PF13670 PepSY_2: Peptidase pr 26.0 1.3E+02 0.0028 22.3 4.3 39 282-327 31-69 (83)
343 PRK14644 hypothetical protein; 26.0 3.9E+02 0.0084 22.2 8.8 80 194-295 5-87 (136)
344 PRK03094 hypothetical protein; 25.9 2.1E+02 0.0046 21.7 5.2 19 282-300 10-28 (80)
345 COG2061 ACT-domain-containing 25.7 86 0.0019 26.8 3.4 32 175-206 4-35 (170)
346 cd04910 ACT_AK-Ectoine_1 ACT d 25.6 1.4E+02 0.003 22.0 4.1 33 270-302 3-38 (71)
347 cd07254 Glo_EDI_BRP_like_20 Th 25.4 70 0.0015 24.8 2.8 42 282-327 72-113 (120)
348 cd07233 Glyoxalase_I Glyoxalas 25.3 1.6E+02 0.0036 22.4 5.0 45 271-326 74-118 (121)
349 PF03698 UPF0180: Uncharacteri 25.3 2.2E+02 0.0048 21.5 5.3 21 282-302 10-30 (80)
350 COG3603 Uncharacterized conser 24.3 79 0.0017 25.9 2.8 32 270-301 65-99 (128)
351 TIGR00302 phosphoribosylformyl 24.1 3.1E+02 0.0066 20.4 6.5 55 277-343 9-69 (80)
352 cd07261 Glo_EDI_BRP_like_11 Th 23.9 97 0.0021 23.6 3.4 49 271-327 63-111 (114)
353 cd08344 MhqB_like_N N-terminal 23.7 84 0.0018 24.2 3.0 39 281-327 67-105 (112)
354 PHA03169 hypothetical protein; 23.4 4.7E+02 0.01 25.7 8.2 40 38-79 318-357 (413)
355 KOG1250 Threonine/serine dehyd 23.2 1.1E+02 0.0025 30.3 4.2 55 18-72 345-404 (457)
356 PF12681 Glyoxalase_2: Glyoxal 22.8 2E+02 0.0043 21.4 5.0 39 282-326 67-105 (108)
357 cd04917 ACT_AKiii-LysC-EC_2 AC 22.3 2.7E+02 0.0058 19.1 7.8 27 178-204 3-32 (64)
358 cd04915 ACT_AK-Ectoine_2 ACT d 22.3 2.9E+02 0.0062 19.5 9.1 29 42-70 3-33 (66)
359 PRK00907 hypothetical protein; 21.8 3.8E+02 0.0083 20.7 7.0 71 31-110 11-84 (92)
360 PRK00630 nickel responsive reg 20.7 5.2E+02 0.011 21.9 9.5 63 42-110 67-129 (148)
361 cd07252 BphC1-RGP6_N_like N-te 20.7 70 0.0015 25.0 2.0 44 280-327 69-113 (120)
362 cd07238 Glo_EDI_BRP_like_5 Thi 20.0 2.4E+02 0.0053 21.3 5.0 47 271-327 61-107 (112)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.97 E-value=6.8e-29 Score=263.49 Aligned_cols=174 Identities=19% Similarity=0.299 Sum_probs=151.6
Q ss_pred CCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHH
Q 019269 161 CSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNG 239 (343)
Q Consensus 161 ~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~ 239 (343)
..++.|.++++.+.++|+|+|+++||||||++|+++|+.+|+||++|+|.| +.+++++|+|+|. .+|.++. ++++++
T Consensus 662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T-~~~g~alD~F~V~d~~g~~~~-~~~~~~ 739 (854)
T PRK01759 662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIIT-SQDGYVLDSFIVTELNGKLLE-FDRRRQ 739 (854)
T ss_pred CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEE-ccCCEEEEEEEEeCCCCCCCC-HHHHHH
Confidence 346788899999999999999999999999999999999999999999996 5889999999997 6788875 668899
Q ss_pred HHHHHHHHHcCCcceee---ecC-----CCCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeecc
Q 019269 240 LSSRLWMELLQPLRVTV---VSR-----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRH 304 (343)
Q Consensus 240 l~~~L~~~L~~~~~~~~---~~~-----~~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~ 304 (343)
|++.|.++|.++..... .++ ..+++|.++ |+|+|.|.|||||||+|+++|.++|++|++|||+
T Consensus 740 l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~-- 817 (854)
T PRK01759 740 LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKIT-- 817 (854)
T ss_pred HHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEc--
Confidence 99999999987653321 111 125777764 6899999999999999999999999999999999
Q ss_pred ccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHcC
Q 019269 305 MIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 341 (343)
Q Consensus 305 T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~~ 341 (343)
|.|+||+|+ |||+|.+|+|++++.+ ++|+++|+.
T Consensus 818 T~gerv~D~--Fyv~~~~g~~l~~~~~-~~l~~~L~~ 851 (854)
T PRK01759 818 TIGEKAEDF--FILTNQQGQALDEEER-KALKSRLLS 851 (854)
T ss_pred ccCceEEEE--EEEECCCCCcCChHHH-HHHHHHHHH
Confidence 999999999 9999999999997744 999998863
No 2
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=3.6e-28 Score=258.78 Aligned_cols=173 Identities=19% Similarity=0.239 Sum_probs=149.2
Q ss_pred CccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHH
Q 019269 162 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL 240 (343)
Q Consensus 162 ~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l 240 (343)
.++.|.+++..+.++|+|+|+++||||||++|+++|+.+|+||++|+|+| +.+|++.|+|+|. .+|.++. ++++++|
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T-~~dg~alD~F~V~d~~g~~~~-~~~~~~I 764 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFT-SRDGMAMDTFIVLEPDGSPLS-QDRHQVI 764 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEE-cCCCeEEEEEEEECCCCCCCC-HHHHHHH
Confidence 46778899999999999999999999999999999999999999999997 5667999999997 6777774 6688999
Q ss_pred HHHHHHHHcCCccee-ee---cC-----CCCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeecc
Q 019269 241 SSRLWMELLQPLRVT-VV---SR-----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRH 304 (343)
Q Consensus 241 ~~~L~~~L~~~~~~~-~~---~~-----~~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~ 304 (343)
++.|.++|.++.... .. ++ ..+++|.++ |+|+|.|.|||||||+|+++|.++|++|++|||+
T Consensus 765 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~-- 842 (884)
T PRK05007 765 RKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARIT-- 842 (884)
T ss_pred HHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEe--
Confidence 999999998763221 11 11 125677765 5899999999999999999999999999999999
Q ss_pred ccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHcC
Q 019269 305 MIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 341 (343)
Q Consensus 305 T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~~ 341 (343)
|.|+||+|+ |||++.+|.|++++ .+++|+++|+.
T Consensus 843 T~gera~Dv--FyV~~~~g~~l~~~-~~~~l~~~L~~ 876 (884)
T PRK05007 843 TIGERVEDL--FILATADRRALNEE-LQQELRQRLTE 876 (884)
T ss_pred ccCceEEEE--EEEEcCCCCcCCHH-HHHHHHHHHHH
Confidence 999999999 99999999999955 57888888763
No 3
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=7.4e-28 Score=255.63 Aligned_cols=184 Identities=20% Similarity=0.272 Sum_probs=157.1
Q ss_pred cCCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269 33 SFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 112 (343)
Q Consensus 33 ~~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l 112 (343)
..+..+.+++.|.|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|.+.+|.+++++++++|++.|.++|
T Consensus 669 i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL 748 (854)
T PRK01759 669 ISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKAL 748 (854)
T ss_pred EEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34566779999999999999999999999999999999999999889999999999999888777789999999999999
Q ss_pred cccccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHH
Q 019269 113 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYD 192 (343)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~ 192 (343)
.+... ... ....++ ...++..++.|.|+|+.+..+|+|+|.++||||||++
T Consensus 749 ~~~~~----------~~~----~~~~~~---------------~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~ 799 (854)
T PRK01759 749 NTNKL----------KKL----NLEENH---------------KLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQ 799 (854)
T ss_pred cCCCC----------cch----hccccc---------------cccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHH
Confidence 76431 100 000011 1123557899999999999999999999999999999
Q ss_pred HHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 019269 193 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 248 (343)
Q Consensus 193 i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L 248 (343)
|+++|+++|++|+.|+|. |.|+++.|+|||+ .+|.++.++++ +.|+++|.++|
T Consensus 800 I~~~l~~~~l~i~~AkI~--T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 800 VSQVFSELNLNLLNAKIT--TIGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred HHHHHHHCCCEEEEEEEc--ccCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence 999999999999999998 7999999999997 67888886655 88999988776
No 4
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=2.8e-27 Score=251.97 Aligned_cols=187 Identities=21% Similarity=0.219 Sum_probs=159.4
Q ss_pred cCCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269 33 SFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 112 (343)
Q Consensus 33 ~~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l 112 (343)
-.+..+.+++.|+|+++||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.+.+|..++++++++|++.|.++|
T Consensus 693 i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL 772 (884)
T PRK05007 693 LSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQAL 772 (884)
T ss_pred EEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 34566678999999999999999999999999999999999999999999999999999887667789999999999999
Q ss_pred cccccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHH
Q 019269 113 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYD 192 (343)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~ 192 (343)
.+.... .... ...++ ...++..++.|.|+|+.+..+|+|+|.++||||||++
T Consensus 773 ~~~~~~-------~~~~------~~~~~---------------~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~ 824 (884)
T PRK05007 773 TQSSPQ-------PPKP------RRLPA---------------KLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLAR 824 (884)
T ss_pred cCCCCC-------cccc------ccccc---------------ccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHH
Confidence 764310 0000 00111 1123567899999999999999999999999999999
Q ss_pred HHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcC
Q 019269 193 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 193 i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
|+++|+++|++|+.|+|. |.|+++.|+|||+ .+|.++. +++.+.|+++|.++|..
T Consensus 825 I~~~l~~~~l~I~~AkI~--T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 825 VGKIFADLGISLHGARIT--TIGERVEDLFILATADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred HHHHHHHCCcEEEEEEEe--ccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 999999999999999998 7999999999997 6788887 66788999999988864
No 5
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.95 E-value=9.7e-27 Score=247.97 Aligned_cols=184 Identities=22% Similarity=0.254 Sum_probs=156.4
Q ss_pred CCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCccc--chhHHHHHHHHHHHHhcccc
Q 019269 39 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH--TRKRKEDTYEHLKTILGNAM 116 (343)
Q Consensus 39 ~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~--~~~~~~~l~~~L~~~l~~~~ 116 (343)
.+.+.|+|+++||||||+++|++|+.+|+||++|+|+|+.+|+++|+|+|.+++|..+ +++++++|++.|.++|.+..
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~ 781 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPD 781 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCC
Confidence 5899999999999999999999999999999999999999999999999999988753 45799999999999997643
Q ss_pred cccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHH
Q 019269 117 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRT 196 (343)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~ 196 (343)
... ..+ ..+.+++ ..++..++.|.++++.+.++|+|+|+++||||||++|+++
T Consensus 782 ~~~------~~~------~~~~~~~---------------~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~ 834 (895)
T PRK00275 782 DYP------TII------QRRVPRQ---------------LKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRI 834 (895)
T ss_pred ccc------hhh------hhhhhhh---------------ccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHH
Confidence 100 000 0111111 1234567899999999999999999999999999999999
Q ss_pred HHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269 197 LKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQP 251 (343)
Q Consensus 197 L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~~ 251 (343)
|+.+|+||++|+|.| .|+++.|+|+|+ .+|.++.+++++++|+++|.++|..+
T Consensus 835 L~~~~l~I~~AkI~T--~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 835 FLEFDLSLQNAKIAT--LGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred HHHCCCEEEEeEEEe--cCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999995 599999999997 67888887778899999999999754
No 6
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=6.4e-26 Score=240.42 Aligned_cols=190 Identities=17% Similarity=0.229 Sum_probs=155.1
Q ss_pred CCCcccCCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHH
Q 019269 28 PFLFFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEH 107 (343)
Q Consensus 28 ~~~~~~~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~ 107 (343)
|+-....+....+.+.|+|+++|+||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.++.|.. ..++.+|++.
T Consensus 677 ~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~--~~~~~~i~~~ 754 (869)
T PRK04374 677 TLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA--DGDPQRLAAA 754 (869)
T ss_pred CeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC--hHHHHHHHHH
Confidence 33333334555689999999999999999999999999999999999999999999999999988764 4668889999
Q ss_pred HHHHhcccccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcc
Q 019269 108 LKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHK 187 (343)
Q Consensus 108 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~Drp 187 (343)
|.++|.++... .... ....++ +..++.+++.|.++++.+.++|+|+|++.|||
T Consensus 755 l~~~l~~~~~~-------~~~~-----~~~~~~---------------~~~~~~~~~~V~~~~~~~~~~t~leI~a~Drp 807 (869)
T PRK04374 755 LRQVLAGDLQK-------VRPA-----RRAVPR---------------QLRHFRFAPRVEFSESAGGRRTRISLVAPDRP 807 (869)
T ss_pred HHHHHcCCCCc-------cccc-----cccCcc---------------cccCCCCCCeEEEeecCCCCeEEEEEEeCCcC
Confidence 99999774310 0010 000111 12345678999999999999999999999999
Q ss_pred cHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHc
Q 019269 188 GLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELL 249 (343)
Q Consensus 188 GLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~ 249 (343)
|||++|+++|+++|+||++|+|+ |.|+++.|+|+|+ .+|.++.++++ +.|+++|.++|.
T Consensus 808 GLLa~Ia~~l~~~~l~I~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 808 GLLADVAHVLRMQHLRVHDARIA--TFGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred cHHHHHHHHHHHCCCeEEEeEEE--ecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence 99999999999999999999999 4599999999997 67777766555 899999988874
No 7
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=6e-26 Score=240.94 Aligned_cols=195 Identities=19% Similarity=0.213 Sum_probs=157.3
Q ss_pred CCCCCCCCcccCCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHH
Q 019269 23 TDGCMPFLFFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKE 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~ 102 (343)
.+.+-|+-. -.+....+.+.|+|+++||||||+++|++|+.+|+||++|+|+|+.+|+++|+|+|.++.|...++++++
T Consensus 661 ~~~~~~~v~-~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~ 739 (856)
T PRK03059 661 VDTDTPIVR-ARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIIN 739 (856)
T ss_pred ccCCCCeEE-EEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHH
Confidence 344455444 3455556899999999999999999999999999999999999999999999999999887755668999
Q ss_pred HHHHHHHHHhcccccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEE
Q 019269 103 DTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIV 182 (343)
Q Consensus 103 ~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~ 182 (343)
+|++.|.++|.++... .... ..+.++ +...+..++.|.++++.+.++|+|+|+
T Consensus 740 ~i~~~l~~~l~~~~~~-------~~~~-----~~~~~~---------------~~~~~~~~~~V~~~~~~~~~~T~i~V~ 792 (856)
T PRK03059 740 LVEHELAERLAEQAPL-------PEPS-----KGRLSR---------------QVKHFPITPRVDLRPDERGQYYILSVS 792 (856)
T ss_pred HHHHHHHHHHcCCCCc-------chhh-----cccccc---------------cccCCCCCceEEEEEcCCCCEEEEEEE
Confidence 9999999999764310 0000 000111 112355678999999999999999999
Q ss_pred ECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 019269 183 CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 249 (343)
Q Consensus 183 ~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~ 249 (343)
++||||||++|+++|+.+|+||++|+|+| .|+++.|+|+|+ +.++.+++++++|++.|.++|.
T Consensus 793 a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T--~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 793 ANDRPGLLYAIARVLAEHRVSVHTAKINT--LGERVEDTFLID--GSGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred eCCcchHHHHHHHHHHHCCCeEEEEEEee--cCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999995 589999999995 2334567788999999988764
No 8
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.94 E-value=1e-25 Score=240.31 Aligned_cols=173 Identities=20% Similarity=0.245 Sum_probs=150.0
Q ss_pred ccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHH
Q 019269 163 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS 241 (343)
Q Consensus 163 ~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~ 241 (343)
.+.|.+.+....++|+|+|+++||||||++|+++|+.+|+||++|+|+| |.+++++|+|+|. .+|.++.+++++++|+
T Consensus 655 ~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~t-t~~g~~lD~F~V~~~~g~~~~~~~~~~~i~ 733 (850)
T TIGR01693 655 GPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNT-TKDGVALDTFVVQDLFGSPPAAERVFQELL 733 (850)
T ss_pred CCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEE-ecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence 4677888777789999999999999999999999999999999999997 7889999999997 6778887777899999
Q ss_pred HHHHHHHcCCccee--ee-----cC-----CCCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269 242 SRLWMELLQPLRVT--VV-----SR-----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 242 ~~L~~~L~~~~~~~--~~-----~~-----~~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
+.|.++|.+..... +. ++ ..+++|.++ |.++|.|.|||||||+|+++|.++|++|++|+|.
T Consensus 734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~ 813 (850)
T TIGR01693 734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT 813 (850)
T ss_pred HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence 99999998754211 11 11 125677764 6899999999999999999999999999999999
Q ss_pred ccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHcC
Q 019269 303 RHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 341 (343)
Q Consensus 303 ~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~~ 341 (343)
|.|++++|+ |||++..|.|++++ .++.|+++|+.
T Consensus 814 --t~~~~~~d~--F~v~~~~g~~~~~~-~~~~l~~~L~~ 847 (850)
T TIGR01693 814 --TFGEKAEDV--FYVTDLFGLKLTDE-EEQRLLEVLAA 847 (850)
T ss_pred --ecCccceeE--EEEECCCCCCCCHH-HHHHHHHHHHH
Confidence 999999999 99999999999975 67899988863
No 9
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=1.3e-24 Score=233.31 Aligned_cols=191 Identities=23% Similarity=0.335 Sum_probs=158.9
Q ss_pred CCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcc-cchhHHHHHHHHHHHHh
Q 019269 34 FSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELL-HTRKRKEDTYEHLKTIL 112 (343)
Q Consensus 34 ~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~-~~~~~~~~l~~~L~~~l 112 (343)
.+..+.+.+.|+|+++||||||++|+++|+.+||||++|+|+|+.+|+++|+|+|+++.|.. .+++++++|++.|..++
T Consensus 725 ~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l 804 (931)
T PRK05092 725 RPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDAL 804 (931)
T ss_pred EecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34555789999999999999999999999999999999999999999999999999988765 46789999999999988
Q ss_pred cccccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHH
Q 019269 113 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYD 192 (343)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~ 192 (343)
.+.... ... ..++. . + ..+..++..++.|.|+++.+.++|+|+|+++||||||++
T Consensus 805 ~~~~~~-------~~~---------~~~r~-~------~--~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~ 859 (931)
T PRK05092 805 SGEVRL-------PEA---------LAKRT-K------P--KKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYD 859 (931)
T ss_pred cCCCCC-------ccc---------ccccc-C------c--cccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHH
Confidence 654210 000 00000 0 0 001123556899999999999999999999999999999
Q ss_pred HHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269 193 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQP 251 (343)
Q Consensus 193 i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~~ 251 (343)
|+++|+++|+||.+|+|. |.|+++.|+|+|+ .+|.++.++++++.|+++|.++|.++
T Consensus 860 I~~~l~~~gl~I~~A~I~--T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~ 917 (931)
T PRK05092 860 LTRALSDLNLNIASAHIA--TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEG 917 (931)
T ss_pred HHHHHHHCCceEEEEEEE--EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence 999999999999999998 5789999999997 67888888878899999999999754
No 10
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.93 E-value=7.9e-25 Score=233.35 Aligned_cols=173 Identities=17% Similarity=0.303 Sum_probs=141.9
Q ss_pred ccEEEEEeCCC---CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCC-ChHHH
Q 019269 163 NVSVTIDNSLS---PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIV-DPSKQ 237 (343)
Q Consensus 163 ~~~V~i~~~~~---~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~-~~~~~ 237 (343)
.+.|.+.+... .+.++|.|+++||||||++|+++|+.+|+||.+|+|+| +.+|.++|+|+|. .+|.++. +++++
T Consensus 688 ~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~T-t~dg~alD~F~V~d~~g~~~~~~~~r~ 766 (895)
T PRK00275 688 GPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIIT-SSSQFTLDTYIVLDDDGEPIGDNPARI 766 (895)
T ss_pred CCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEE-cCCCeEEEEEEEeCCCCCCccchHHHH
Confidence 34555665554 58999999999999999999999999999999999997 6778999999997 6777754 45789
Q ss_pred HHHHHHHHHHHcCCccee--eec---C-----CCCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEE
Q 019269 238 NGLSSRLWMELLQPLRVT--VVS---R-----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAE 300 (343)
Q Consensus 238 ~~l~~~L~~~L~~~~~~~--~~~---~-----~~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~Ak 300 (343)
++|++.|.++|.++.... +.. + ..++.+.+. |.|+|.|.||||||++|+++|+++|+||++|+
T Consensus 767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak 846 (895)
T PRK00275 767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK 846 (895)
T ss_pred HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence 999999999998765321 111 1 113455443 58999999999999999999999999999999
Q ss_pred eeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269 301 IGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 340 (343)
Q Consensus 301 I~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~ 340 (343)
|. |.|++|.|+ |||++.+|.+++++..+++|+++|.
T Consensus 847 I~--T~g~~v~D~--F~V~d~~g~~l~~~~~~~~l~~~L~ 882 (895)
T PRK00275 847 IA--TLGERVEDV--FFITDADNQPLSDPQLCSRLQDAIC 882 (895)
T ss_pred EE--ecCCEEEEE--EEEECCCCCCCCCHHHHHHHHHHHH
Confidence 99 999999999 9999999999986445566666664
No 11
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.93 E-value=1.3e-24 Score=231.79 Aligned_cols=184 Identities=23% Similarity=0.276 Sum_probs=153.1
Q ss_pred CCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCccc-chhHHHHHHHHHHHHhccc
Q 019269 37 KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTILGNA 115 (343)
Q Consensus 37 ~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~-~~~~~~~l~~~L~~~l~~~ 115 (343)
...+++.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++.+|..+ +++++++|++.|.++|.+.
T Consensus 664 ~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~ 743 (850)
T TIGR01693 664 RPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGL 743 (850)
T ss_pred CCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 338999999999999999999999999999999999999888999999999999988764 4567999999999999764
Q ss_pred ccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHH
Q 019269 116 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMR 195 (343)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~ 195 (343)
.... ..... ....++ +..++..++.|.|+|+.+.++|+|+|.|+||||||++|++
T Consensus 744 ~~~~------~~~~~----~~~~~~---------------~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~ 798 (850)
T TIGR01693 744 AKDP------DTISA----RRARRR---------------RLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGR 798 (850)
T ss_pred Cccc------ccccc----ccCCcc---------------cccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHH
Confidence 3100 00000 000111 1123557899999999999999999999999999999999
Q ss_pred HHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 019269 196 TLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 248 (343)
Q Consensus 196 ~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L 248 (343)
+|+++|+||++|+|. |.|+++.|+|+++ ..|.++.+ ++.+.|+++|.++|
T Consensus 799 ~l~~~~~~i~~a~i~--t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 799 TLEELGLSIQSAKIT--TFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred HHHHCCCeEEEEEEE--ecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence 999999999999998 6789999999998 67888876 67889999988765
No 12
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=2.1e-24 Score=228.95 Aligned_cols=169 Identities=17% Similarity=0.208 Sum_probs=140.1
Q ss_pred cEEEEE-eCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHH
Q 019269 164 VSVTID-NSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS 241 (343)
Q Consensus 164 ~~V~i~-~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~ 241 (343)
+.|.+. .....+.+.|+|+++||||||++|+++|+.+|+||.+|+|+| +.+|.++|+|+|. +++.. .+++++++
T Consensus 677 ~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t-~~~g~~ld~f~V~~~~~~~---~~~~~~i~ 752 (869)
T PRK04374 677 TLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLD-APHDAIFDVFEVLPQDTYA---DGDPQRLA 752 (869)
T ss_pred CeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEE-cCCCEEEEEEEEeCCCCCC---hHHHHHHH
Confidence 444443 366678999999999999999999999999999999999997 6778999999997 45543 34678899
Q ss_pred HHHHHHHcCCccee-eecC---------CCCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeecc
Q 019269 242 SRLWMELLQPLRVT-VVSR---------GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRH 304 (343)
Q Consensus 242 ~~L~~~L~~~~~~~-~~~~---------~~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~ 304 (343)
+.|.++|.++.... +..+ ..+|+|.+. +.|+|.|.|||||||+|+++|+++|++|++|+|.
T Consensus 753 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~-- 830 (869)
T PRK04374 753 AALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIA-- 830 (869)
T ss_pred HHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEE--
Confidence 99999998864321 1111 124666653 6899999999999999999999999999999999
Q ss_pred ccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHcC
Q 019269 305 MIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 341 (343)
Q Consensus 305 T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~~ 341 (343)
|.|++|+|+ |||++++|.+++++.+ ++|+++|+.
T Consensus 831 T~g~~a~D~--F~V~d~~g~~~~~~~~-~~l~~~L~~ 864 (869)
T PRK04374 831 TFGERAEDQ--FQITDEHDRPLSESAR-QALRDALCA 864 (869)
T ss_pred ecCCEEEEE--EEEECCCCCcCChHHH-HHHHHHHHH
Confidence 999999999 9999999999887644 888888863
No 13
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=7.4e-24 Score=223.09 Aligned_cols=176 Identities=18% Similarity=0.256 Sum_probs=141.0
Q ss_pred CCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcccccc
Q 019269 39 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS 118 (343)
Q Consensus 39 ~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~ 118 (343)
.+.+.|+|+|+||||||++||++|+.+||||++|+|+| .+|+++|+|+|.++.|... .++++++.|.+++.+...
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t-~dg~~ld~F~V~~~~~~~~---~~~~l~~~L~~~L~~~~~- 671 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS-HDGVAVLEFVVSPRFGSPP---DAALLRQDLRRALDGDLD- 671 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe-cCCEEEEEEEEECCCCCcc---hHHHHHHHHHHHHcCCCc-
Confidence 78999999999999999999999999999999999999 7999999999999887643 358899999999876421
Q ss_pred cccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHH
Q 019269 119 CDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLK 198 (343)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~ 198 (343)
.. ... .++. +. ....+...+..++.|.+++..+.++|+|+|+++||||||++|+++|+
T Consensus 672 ~~-----~~~----------~~~~-~~------~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~ 729 (774)
T PRK03381 672 VL-----ARL----------AARE-AA------AAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALE 729 (774)
T ss_pred hh-----hhh----------hccc-cc------ccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHH
Confidence 00 000 0000 00 00001123456789999999999999999999999999999999999
Q ss_pred hCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHH
Q 019269 199 DYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW 245 (343)
Q Consensus 199 ~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~ 245 (343)
++|+||++|+|. |.|+++.|+|+|+ .+|.++.++ .+.|+++|.
T Consensus 730 ~~~lnI~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 730 RAGVDVRWARVA--TLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred HCCCeEEEEEEe--ecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence 999999999999 5599999999997 678888754 667776653
No 14
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=8.1e-24 Score=222.82 Aligned_cols=166 Identities=18% Similarity=0.203 Sum_probs=138.9
Q ss_pred ccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHH
Q 019269 163 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS 241 (343)
Q Consensus 163 ~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~ 241 (343)
++.|.+.+.. .+.++|+|+++||||||++|+++|+.+|+||++|+|+| .++.+.|+|+|. .+|.+. .+++++
T Consensus 587 ~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~----~~~~l~ 659 (774)
T PRK03381 587 GVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPP----DAALLR 659 (774)
T ss_pred CCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcc----hHHHHH
Confidence 4667777777 89999999999999999999999999999999999994 678999999998 555532 257899
Q ss_pred HHHHHHHcCCccee--eec-------CC-----CCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEE
Q 019269 242 SRLWMELLQPLRVT--VVS-------RG-----PDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAE 300 (343)
Q Consensus 242 ~~L~~~L~~~~~~~--~~~-------~~-----~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~Ak 300 (343)
+.|.+++.++.... +.. +. .++.+.+. +.|+|.|.||||||++|+++|+++|+||++|+
T Consensus 660 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~Ak 739 (774)
T PRK03381 660 QDLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWAR 739 (774)
T ss_pred HHHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEE
Confidence 99999998864321 000 11 12344332 68999999999999999999999999999999
Q ss_pred eeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHcC
Q 019269 301 IGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 341 (343)
Q Consensus 301 I~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~~ 341 (343)
|. |.|++|+|+ |||++++|.+++++ +++|+++|++
T Consensus 740 I~--T~g~~a~D~--F~V~d~~g~~~~~~--~~~l~~~L~~ 774 (774)
T PRK03381 740 VA--TLGADVVDV--FYVTGAAGGPLADA--RAAVEQAVLA 774 (774)
T ss_pred Ee--ecCCeEEEE--EEEECCCCCcCchH--HHHHHHHhhC
Confidence 99 999999999 99999999999976 6999999974
No 15
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=1.2e-23 Score=226.09 Aligned_cols=174 Identities=22% Similarity=0.328 Sum_probs=145.3
Q ss_pred CccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHH
Q 019269 162 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL 240 (343)
Q Consensus 162 ~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l 240 (343)
.++.|.+.+....+.++|+|+++||||||++|+++|+.+|+||.+|+|+| +.++.+.|+|+|. .+|.++.+++++++|
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t-~~dg~alD~F~V~~~~g~~~~~~~~~~~l 796 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFT-TTDGRALDTFWIQDAFGRDEDEPRRLARL 796 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEE-ecCCeEEEEEEEECCCCCCCCCHHHHHHH
Confidence 45677788888889999999999999999999999999999999999997 5788999999997 667776677889999
Q ss_pred HHHHHHHHcCCccee--e----ec--C----CCCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEe
Q 019269 241 SSRLWMELLQPLRVT--V----VS--R----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEI 301 (343)
Q Consensus 241 ~~~L~~~L~~~~~~~--~----~~--~----~~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI 301 (343)
++.|..++.+...+. + .+ + ..++.|.++ +.|+|.+.||||||++|+++|+++|+||++|+|
T Consensus 797 ~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I 876 (931)
T PRK05092 797 AKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHI 876 (931)
T ss_pred HHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEE
Confidence 999999997653321 1 01 1 013555554 589999999999999999999999999999999
Q ss_pred eccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269 302 GRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 340 (343)
Q Consensus 302 ~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~ 340 (343)
. |.|+++.|+ |||++.+|.++.++..+++|+++|.
T Consensus 877 ~--T~~~~~~D~--F~v~d~~g~~i~~~~~~~~l~~~L~ 911 (931)
T PRK05092 877 A--TYGERAVDV--FYVTDLFGLKITNEARQAAIRRALL 911 (931)
T ss_pred E--EcCCEEEEE--EEEeCCCCCcCCCHHHHHHHHHHHH
Confidence 9 999999999 9999999999986544555655553
No 16
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.9e-24 Score=218.22 Aligned_cols=171 Identities=19% Similarity=0.281 Sum_probs=140.7
Q ss_pred ccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHH
Q 019269 163 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS 241 (343)
Q Consensus 163 ~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~ 241 (343)
.+.|.+......+.|+|.|+++|+|.||+.++..+...|.||++|+|+| |..|+++|+|+|. ++|.++. +++...++
T Consensus 671 ~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~t-t~dG~alDtfiv~~~~g~~~~-~dr~~~~~ 748 (867)
T COG2844 671 KPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFT-TRDGYALDTFIVLEPDGFPVE-EDRRAALR 748 (867)
T ss_pred CcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEE-ccCCceeeeEEEecCCCCccc-hhHHHHHH
Confidence 4566666677778999999999999999999999999999999999998 6778999999998 7787776 66777888
Q ss_pred HHHHHHHcCCcce-ee---ecCC-----CCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccc
Q 019269 242 SRLWMELLQPLRV-TV---VSRG-----PDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHM 305 (343)
Q Consensus 242 ~~L~~~L~~~~~~-~~---~~~~-----~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T 305 (343)
..|.+++...... .. .++. .+|++.+. |.+||+|.||||||++|+++|.+++++|++|||+ |
T Consensus 749 ~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkIt--T 826 (867)
T COG2844 749 GELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKIT--T 826 (867)
T ss_pred HHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeec--c
Confidence 8888877644222 11 0111 14555443 6899999999999999999999999999999999 9
Q ss_pred cCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269 306 IGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 340 (343)
Q Consensus 306 ~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~ 340 (343)
.||||+|+ |||++..|.+++++ .++.+.+.|+
T Consensus 827 ~GErveD~--F~vt~~~~~~l~~~-~~q~l~~~ll 858 (867)
T COG2844 827 FGERVEDV--FIVTDADGQALNAE-LRQSLLQRLL 858 (867)
T ss_pred ccccceeE--EEEeccccccCCHH-HHHHHHHHHH
Confidence 99999999 99999999999866 4566655554
No 17
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.7e-24 Score=214.76 Aligned_cols=193 Identities=23% Similarity=0.260 Sum_probs=157.3
Q ss_pred CCCCCCcccCCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHH
Q 019269 25 GCMPFLFFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDT 104 (343)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l 104 (343)
-+.|+-...-...+ +.+.|+|+++|+|.||+.+|+.+...|+||++|+|+|+.||+++|+|+|++++|..+++.+...+
T Consensus 669 ~~~~Lv~~~~r~~~-~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~ 747 (867)
T COG2844 669 LGKPLVLISVRPHS-GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAAL 747 (867)
T ss_pred ccCcceeeeecccC-CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHH
Confidence 34444444444554 88999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHhcccccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEEC
Q 019269 105 YEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ 184 (343)
Q Consensus 105 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~ 184 (343)
+..|.+++...... +.. ....++ +..++.++|.|.|.+..+...|+|+|.+.
T Consensus 748 ~~~l~~~l~s~~~~-------~~~------~~r~~r---------------~~~~f~i~p~v~i~~t~~~~~t~lEv~al 799 (867)
T COG2844 748 RGELIEALLSGKAQ-------PPR------RRRIPR---------------KLRHFPIPPRVTILPTASNDKTVLEVRAL 799 (867)
T ss_pred HHHHHHHHhcCCCC-------Ccc------ccccCc---------------ccceeccCCceeeccccCCCceEEEEEeC
Confidence 88888888653210 000 011122 22346788999999999999999999999
Q ss_pred CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHc
Q 019269 185 DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELL 249 (343)
Q Consensus 185 DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~ 249 (343)
||||||++++++|++++++|++|+|. |.|+++.|+|+|+ ..+.++. ++..+.+.+.|.+++.
T Consensus 800 DRpGLLa~v~~v~~dl~l~i~~AkIt--T~GErveD~F~vt~~~~~~l~-~~~~q~l~~~ll~al~ 862 (867)
T COG2844 800 DRPGLLAALAGVFADLGLSLHSAKIT--TFGERVEDVFIVTDADGQALN-AELRQSLLQRLLEALL 862 (867)
T ss_pred CcccHHHHHHHHHHhcccceeeeeec--cccccceeEEEEeccccccCC-HHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998 7899999999998 7788885 4455566666666654
No 18
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=3.6e-23 Score=219.78 Aligned_cols=169 Identities=16% Similarity=0.169 Sum_probs=137.5
Q ss_pred ccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHH
Q 019269 163 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS 241 (343)
Q Consensus 163 ~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~ 241 (343)
.+.|.+.+....+.+.|+|+++||||||++|+++|+.+|+||.+|+|+| +.+|.++|+|+|. ++|. ..+++++++|+
T Consensus 665 ~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t-~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~ 742 (856)
T PRK03059 665 TPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHT-TRHGYALDTFQVLDPEED-VHYRDIINLVE 742 (856)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEE-cCCCeEEEEEEEeCCCCC-CChHHHHHHHH
Confidence 3556677777889999999999999999999999999999999999997 6778999999997 4444 45567899999
Q ss_pred HHHHHHHcCCccee--eec---CC-----CCceeeee-------eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeecc
Q 019269 242 SRLWMELLQPLRVT--VVS---RG-----PDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRH 304 (343)
Q Consensus 242 ~~L~~~L~~~~~~~--~~~---~~-----~~~~v~~~-------~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~ 304 (343)
+.|.++|.++.... ... +. .++.+.+. |.|+|.|.||||||++|+.+|+++|+||++|+|.
T Consensus 743 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~-- 820 (856)
T PRK03059 743 HELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKIN-- 820 (856)
T ss_pred HHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEe--
Confidence 99999998864321 111 11 13445442 6899999999999999999999999999999999
Q ss_pred ccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269 305 MIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 340 (343)
Q Consensus 305 T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~ 340 (343)
|.|++|+|+ |||.+ .+++++..+++|++.|.
T Consensus 821 T~~~~v~Dv--F~V~~---~~~~~~~~~~~l~~~L~ 851 (856)
T PRK03059 821 TLGERVEDT--FLIDG---SGLSDNRLQIQLETELL 851 (856)
T ss_pred ecCCEEEEE--EEEcC---CCCCCHHHHHHHHHHHH
Confidence 999999999 99953 33544445788888775
No 19
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.84 E-value=9.4e-21 Score=140.81 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=65.8
Q ss_pred eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHcC
Q 019269 269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 341 (343)
Q Consensus 269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~~ 341 (343)
|+|+|.++|||||||+|+++|+++|++|++|||+ |.|++++|+ |||++.+|.|+++++.+++|+++|..
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~Dv--FyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDV--FHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEE--EEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999999999999999999 999999999 99999999999876678999999975
No 20
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.84 E-value=1.2e-20 Score=141.22 Aligned_cols=68 Identities=24% Similarity=0.357 Sum_probs=64.4
Q ss_pred eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269 269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 340 (343)
Q Consensus 269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~ 340 (343)
|+|+|.|+|||||||+|+++|.++|++|++|+|+ |.|++|+|+ |||++.+|.|++++..+++|+++|+
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~--FyV~d~~g~kl~~~~~~~~l~~~L~ 69 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQE--YYIRHKDGRTLSTEGERQRVIKCLE 69 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEE--EEEEcCCCCccCCHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999 999999999 9999999999997767788888875
No 21
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.77 E-value=1.7e-18 Score=129.60 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=63.3
Q ss_pred eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269 269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 340 (343)
Q Consensus 269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~ 340 (343)
|+++|.|.|||||||+|+++|+++|++|++|||+-.|.|++++|+ ||| +.+|.++++++.++.|+++|+
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~--Fyv-~~~g~kl~d~~~~~~L~~~L~ 69 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDL--FIV-QSDGKKIMDPKKQAALCARLR 69 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEE--EEE-eCCCCccCCHHHHHHHHHHHH
Confidence 479999999999999999999999999999999888999999999 999 899999987656788888775
No 22
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.74 E-value=2.8e-17 Score=123.04 Aligned_cols=73 Identities=19% Similarity=0.367 Sum_probs=68.9
Q ss_pred eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcC
Q 019269 176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
+|+|+|.|+||||||++|+++|+++|++|++|+|. |.|+++.|+|||. .+|.++.++++.+.|+++|.++|.+
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999998 7899999999997 7899999998999999999998865
No 23
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.69 E-value=2.3e-16 Score=118.20 Aligned_cols=75 Identities=63% Similarity=1.006 Sum_probs=68.3
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP 251 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~ 251 (343)
|+|+|.++|||||||+|+++|+++|++|+.|+|.+.|.|+++.|+|||+.+|.++.++++.+.|+++|.+++..|
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999999999999855689999999999777888988889999999999988653
No 24
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.68 E-value=8.4e-16 Score=135.73 Aligned_cols=156 Identities=10% Similarity=0.064 Sum_probs=109.4
Q ss_pred CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcc
Q 019269 174 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR 253 (343)
Q Consensus 174 ~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~ 253 (343)
..+.+|++.|+|||||++.|+++|+++||||.+++.. ..|+.+.-++.++. . +...++|+..|.. +.....
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t--~lgg~Fa~i~lvs~--~----~~~~~~le~~L~~-l~~~~~ 76 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLA--MLGEEFTFIMLLSG--S----WNAITLIESTLPL-KGAELD 76 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhH--hhCCceEEEEEEeC--C----hhHHHHHHHHHHh-hhhhcC
Confidence 3678999999999999999999999999999999987 67888776677642 1 2255678777644 333333
Q ss_pred ee--eec-CC-CCceeeeeeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCc--eEeeee--EEEEEcCCCCC
Q 019269 254 VT--VVS-RG-PDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGD--REWEVY--RVLLDEGDGLS 325 (343)
Q Consensus 254 ~~--~~~-~~-~~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~--~~~dv~--~F~v~~~~g~~ 325 (343)
+. +.. .. ..........++|.+.|||||+++||++|+++|+||.+.+.. |.+. ...+.| .|.+.-|.|..
T Consensus 77 L~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~--~~~a~~~~~~lf~~~~~v~lP~~~~ 154 (190)
T PRK11589 77 LLIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSR--TQPAEGERPAQLHIQITAHSPASQD 154 (190)
T ss_pred eEEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEe--eecCCCCCcccEEEEEEEEcCCCCC
Confidence 32 211 11 011111245899999999999999999999999999999999 7774 555553 34455566655
Q ss_pred CCc-hHHHHHHHHHHc
Q 019269 326 VPR-NKIEEGVWKLLM 340 (343)
Q Consensus 326 l~~-~~~~~~l~~~L~ 340 (343)
+.. ....+.+.++|+
T Consensus 155 ~~~L~~~l~~l~~eL~ 170 (190)
T PRK11589 155 AANIEQAFKALCTELN 170 (190)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 542 122456665553
No 25
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.68 E-value=4.1e-16 Score=115.96 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=62.9
Q ss_pred eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHH
Q 019269 176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW 245 (343)
Q Consensus 176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~ 245 (343)
+|+|+|.++||||||++|+++|+++|++|+.|+|. |.|+++.|+|||+ .+|.++.++++++.|+++|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999999999999999998 7999999999997 78899988888888888764
No 26
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.64 E-value=2.4e-15 Score=113.79 Aligned_cols=72 Identities=72% Similarity=1.152 Sum_probs=66.4
Q ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcc
Q 019269 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 114 (343)
Q Consensus 43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~ 114 (343)
.+.|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|.++.+...++++++++++.|.++|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence 689999999999999999999999999999999988999999999999877755678999999999998865
No 27
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.63 E-value=2.5e-15 Score=112.73 Aligned_cols=71 Identities=31% Similarity=0.339 Sum_probs=64.5
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCccc-chhHHHHHHHHHHHHh
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTIL 112 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~-~~~~~~~l~~~L~~~l 112 (343)
+.|.|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|+++.|... ++++++++++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 5899999999999999999999999999999999988999999999999877654 6788999999887753
No 28
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.58 E-value=9.7e-15 Score=109.85 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=61.2
Q ss_pred eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCC-CCCCCchHHHHHHHHHHc
Q 019269 269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGD-GLSVPRNKIEEGVWKLLM 340 (343)
Q Consensus 269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~-g~~l~~~~~~~~l~~~L~ 340 (343)
|+++|.++|||||+++|+++|+++|+||++|+|. |.|+++.|+ |||++++ |.++.++..+++|+++|+
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~--t~~~~~~d~--f~V~d~~~~~~~~~~~~~~~i~~~L~ 69 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAW--THNGRLACV--IYVRDEETGAPIDDPIRLASIEDRLD 69 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEE--EECCEEEEE--EEEEcCcCCCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999 999999999 9999998 888876545677777764
No 29
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.58 E-value=8.5e-14 Score=122.99 Aligned_cols=161 Identities=9% Similarity=0.077 Sum_probs=106.9
Q ss_pred CCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhccccc
Q 019269 38 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMI 117 (343)
Q Consensus 38 ~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~ 117 (343)
...+++|+++|+||||+.++++++|+++||||++++...+ +|.+.-++.|.. ++..+++|+..|...-....
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~l-gg~Fa~i~lvs~------~~~~~~~le~~L~~l~~~~~- 76 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML-GEEFTFIMLLSG------SWNAITLIESTLPLKGAELD- 76 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhh-CCceEEEEEEeC------ChhHHHHHHHHHHhhhhhcC-
Confidence 5688999999999999999999999999999999999887 666666677743 24567888887776322110
Q ss_pred ccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHH
Q 019269 118 SCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTL 197 (343)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L 197 (343)
..+ ..++... .. .......+.++|++.||||++++++++|
T Consensus 77 --------L~i---------~v~~~~~-----------------~~------~~~~~~~~~v~v~G~DrPGIV~~vT~~l 116 (190)
T PRK11589 77 --------LLI---------VMKRTTA-----------------RP------RPAMPATVWVQVEVADSPHLIERFTALF 116 (190)
T ss_pred --------eEE---------EEEeccc-----------------cc------cccCCceEEEEEEECCCCCHHHHHHHHH
Confidence 111 0101000 00 0111124799999999999999999999
Q ss_pred HhCCeeEEEEEEEEeecCC--EEEEEEEE----e-cCCCCCCChHHHHHHHHHHHHHHcCCccee
Q 019269 198 KDYNIQVSYGRFSRRQRGN--CEIDLFIM----Q-ADGKKIVDPSKQNGLSSRLWMELLQPLRVT 255 (343)
Q Consensus 198 ~~~glnI~~A~i~t~t~g~--~~~d~F~v----~-~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~ 255 (343)
+++|+||.+-+-. +.+. ...+.|.+ . +.+. ..+.|+++|+ .+.+++.++
T Consensus 117 a~~~iNI~~L~T~--~~~a~~~~~~lf~~~~~v~lP~~~------~~~~L~~~l~-~l~~eL~vd 172 (190)
T PRK11589 117 DSHHMNIAELVSR--TQPAEGERPAQLHIQITAHSPASQ------DAANIEQAFK-ALCTELNAQ 172 (190)
T ss_pred HHcCCChhheEEe--eecCCCCCcccEEEEEEEEcCCCC------CHHHHHHHHH-HHHHHhCce
Confidence 9999999976654 4442 33344544 3 2222 2456777763 345554443
No 30
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.58 E-value=2.2e-14 Score=107.58 Aligned_cols=71 Identities=24% Similarity=0.329 Sum_probs=62.6
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 248 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L 248 (343)
+.|+|+++||||||++++++|+.+|+||++|+|+| +.++++.|+|+|. .++.++.++++++++++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T-~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFT-TRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEE-eCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 68999999999999999999999999999999996 5568999999997 66777767778899999887653
No 31
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.57 E-value=3.1e-14 Score=107.68 Aligned_cols=71 Identities=23% Similarity=0.371 Sum_probs=62.9
Q ss_pred EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcC
Q 019269 178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
.++|+++||||||++++++|+++|+||++|+|.| |.++++.|+|+|. .++. ..+++++++++++|.++|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T-t~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVST-TPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE-CCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999996 5889999999997 4444 45577889999999998865
No 32
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.57 E-value=2.7e-14 Score=107.46 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=64.1
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cC-CCCCCChHHHHHHHHHHHHHHc
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-AD-GKKIVDPSKQNGLSSRLWMELL 249 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~-g~~i~~~~~~~~l~~~L~~~L~ 249 (343)
|+|+|+++||||||++|+++|+++|+||++|+|+| .|+++.|+|+|. .+ +.++.++++++++++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t--~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWT--HNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEE--ECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999994 588999999997 55 7777778889999999988875
No 33
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.52 E-value=1.3e-13 Score=101.21 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=56.4
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 112 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l 112 (343)
..|.|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|.+.+|. .-+.++..|.++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~-----~~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG-----ETAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc-----chHHHHHHHHHhh
Confidence 47999999999999999999999999999999999999999999999997665 1235555555543
No 34
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.35 E-value=6.6e-12 Score=106.76 Aligned_cols=141 Identities=14% Similarity=0.080 Sum_probs=99.2
Q ss_pred CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcc
Q 019269 174 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR 253 (343)
Q Consensus 174 ~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~ 253 (343)
.++.+|++++.||||+...++++..++||||.++|+. ..|+.+.-+..+. |. .+...+|+..| ..+..+..
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla--~~g~~~a~i~lis--gs----~dav~~le~~l-~~l~~~~~ 73 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLA--MLGEEFAGIMLIS--GS----WDAVTLLEATL-PLLGAELD 73 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHH--HhhcceeEEEEEe--eC----HHHHHHHHHHh-hcccccCC
Confidence 3568999999999999999999999999999999997 6787776444443 22 34566787776 44555444
Q ss_pred ee--eecCCC-C-ceeeeeeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccC--ceEeeeeEEEEEcCCCCCCC
Q 019269 254 VT--VVSRGP-D-TELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIG--DREWEVYRVLLDEGDGLSVP 327 (343)
Q Consensus 254 ~~--~~~~~~-~-~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g--~~~~dv~~F~v~~~~g~~l~ 327 (343)
+. +.+.+. + +.-...++++|.+.|||||+.++|++|.++|+||.+.... |.- ..-... |.+.-.-+.|.+
T Consensus 74 L~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~--~~~a~~s~~~l--fha~it~~lPa~ 149 (176)
T COG2716 74 LLVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSR--TYPAPGSSAPL--FHAQITARLPAN 149 (176)
T ss_pred eEEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceee--eeecCCCCccc--eehhhhccCCCc
Confidence 43 222221 1 1222345899999999999999999999999999999887 432 222233 555433444544
No 35
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.33 E-value=1.4e-11 Score=92.04 Aligned_cols=67 Identities=34% Similarity=0.422 Sum_probs=58.5
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHH
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 109 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~ 109 (343)
+.|.|+++|+||+|++++++|+.+|+||++|+++|. +++++|+|+|.++++...++++++++++.|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~-~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-GDMAVNVFYVTDANGNPVDPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC-CCeEEEEEEEECCCCCcCCHHHHHHHHHHhc
Confidence 589999999999999999999999999999999986 7799999999998776556677777776653
No 36
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.32 E-value=1.4e-11 Score=92.09 Aligned_cols=67 Identities=22% Similarity=0.266 Sum_probs=60.1
Q ss_pred eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269 269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 340 (343)
Q Consensus 269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~ 340 (343)
+.++|.++||||+|++|+.+|+++|+||.+|++. |.++.+.|+ |+|.+++|.+++++ ..++|++.|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~--t~~~~~~d~--f~v~~~~~~~~~~~-~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEIS--TQGDMAVNV--FYVTDANGNPVDPK-TIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEe--cCCCeEEEE--EEEECCCCCcCCHH-HHHHHHHHhc
Confidence 3689999999999999999999999999999999 888899999 99999999988544 6788888873
No 37
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.32 E-value=3e-11 Score=125.38 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=112.9
Q ss_pred EEEEEEE-CCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEec-CCCCCCChHHHHHHHHHHHHHHcCCcce
Q 019269 177 TLVQIVC-QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQA-DGKKIVDPSKQNGLSSRLWMELLQPLRV 254 (343)
Q Consensus 177 t~i~V~~-~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~-~g~~i~~~~~~~~l~~~L~~~L~~~~~~ 254 (343)
-.++|.. +|++|++.+++++|+.++++|.+|++. + +|.+...|.|.+ .|.+ .++ ..+++.+..++.+.+.+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~--~-~~~~~~~~~v~~~~~~~-~~~---~~~~~~~~~~~~~~~~~ 619 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMV--A-NGPWSAEFDVRANGPQD-FDP---QEFLQAYKSGVYSELPD 619 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEe--c-CCceEEEEEEecCCCCC-CCh---HHHHHHHHHhhcCCCCc
Confidence 4788888 999999999999999999999999997 4 568888999984 4555 334 46777777777776554
Q ss_pred eeecCCCCceeeeeeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHH
Q 019269 255 TVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEG 334 (343)
Q Consensus 255 ~~~~~~~~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~ 334 (343)
. ..+++....+.+++||++.||||+|+.|+++|. .|.+|+++ |.|..+.|+ ||+.. | .+..+....
T Consensus 620 ~--~~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~--~~g~~~~~~--~~~~~--~--~~r~~~~~~ 685 (693)
T PRK00227 620 P--APGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITAS--TPGATMIVQ--AALKP--G--FDRATVERD 685 (693)
T ss_pred c--cCCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhc--CCCcceEEE--EEecC--c--ccHHHHHHH
Confidence 2 223334445668999999999999999999999 89999999 999999999 99982 2 233445566
Q ss_pred HHHHHcC
Q 019269 335 VWKLLMG 341 (343)
Q Consensus 335 l~~~L~~ 341 (343)
|.+.|.|
T Consensus 686 ~~~~~~~ 692 (693)
T PRK00227 686 VTRVLAG 692 (693)
T ss_pred HHHHHhc
Confidence 6666544
No 38
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.31 E-value=1.9e-11 Score=89.75 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=53.9
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 248 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L 248 (343)
..|.|+++||||||++++++|+.+|+||++|+|+| +.+|.++|+|+|. .+|.. + +.|+++|+++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~t-t~dG~~LDtF~V~d~~~~~---~---~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFS-TDDGLALDIFVVTGWKRGE---T---AALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEE-cCCCeEEEEEEEecCCccc---h---HHHHHHHHHhh
Confidence 57899999999999999999999999999999998 6778999999997 44432 1 35666666654
No 39
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.30 E-value=1.2e-11 Score=105.22 Aligned_cols=165 Identities=12% Similarity=0.125 Sum_probs=111.0
Q ss_pred CCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcccccc
Q 019269 39 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS 118 (343)
Q Consensus 39 ~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~ 118 (343)
+.+++|++++.||||+...++++..++||||+++++.... +.+.-+..+.- +|+...+++..|.. +..+.+
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g-~~~a~i~lisg------s~dav~~le~~l~~-l~~~~~- 73 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLG-EEFAGIMLISG------SWDAVTLLEATLPL-LGAELD- 73 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhh-cceeEEEEEee------CHHHHHHHHHHhhc-ccccCC-
Confidence 5679999999999999999999999999999999999974 44444444442 47778888888866 433220
Q ss_pred cccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHH
Q 019269 119 CDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLK 198 (343)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~ 198 (343)
..+. +.+.. ..+ .......+.+.|.+.||||++.++++.|.
T Consensus 74 -------L~v~--------m~rt~------------------~~~------~~a~~~~v~v~v~a~DrpgIv~~~T~lf~ 114 (176)
T COG2716 74 -------LLVV--------MKRTG------------------AHP------TPANPAPVWVYVDANDRPGIVEEFTALFD 114 (176)
T ss_pred -------eEEE--------EeecC------------------CCc------cCCCCceEEEEEEecCCccHHHHHHHHHH
Confidence 1110 01100 001 12344568999999999999999999999
Q ss_pred hCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 019269 199 DYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQPLRV 254 (343)
Q Consensus 199 ~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~~~~~ 254 (343)
.+|+||++-.-.+....+.-...|+.+ .-.-+.. -....|++++ ++|...+.+
T Consensus 115 ~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~--~~i~~l~~~f-~al~~~L~v 168 (176)
T COG2716 115 GHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN--LSISALRDAF-EALCDELNV 168 (176)
T ss_pred hcCCchhhceeeeeecCCCCccceehhhhccCCCc--CcHHHHHHHH-HHHHHhhcc
Confidence 999999976654333334455568775 2233322 2345677776 445555544
No 40
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.25 E-value=7.8e-11 Score=86.97 Aligned_cols=69 Identities=39% Similarity=0.514 Sum_probs=62.0
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 111 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~ 111 (343)
+.|.|.++|+||+|++++++|+.+|+||.++++.+. +++++|+|++.++.+...+.+++++|++.|.++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~-~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATL-GERAEDVFYVTDADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec-CCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 478999999999999999999999999999999986 569999999999887766778999999988764
No 41
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.20 E-value=4.9e-10 Score=116.49 Aligned_cols=147 Identities=12% Similarity=0.081 Sum_probs=116.0
Q ss_pred CEEEEEEEE-cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcccccc
Q 019269 40 DVFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS 118 (343)
Q Consensus 40 ~~~~I~V~~-~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~ 118 (343)
..-.++|.. +|++|++.+++++|+.++++|.+|++.+ +|.++..|.|.+..|..+++ ..+++.+..++.+..+
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~--~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~- 618 (693)
T PRK00227 545 EDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA--NGPWSAEFDVRANGPQDFDP---QEFLQAYKSGVYSELP- 618 (693)
T ss_pred cCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec--CCceEEEEEEecCCCCCCCh---HHHHHHHHHhhcCCCC-
Confidence 335788888 9999999999999999999999999988 78888999999988887776 4777788887765431
Q ss_pred cccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHH
Q 019269 119 CDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLK 198 (343)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~ 198 (343)
. .. ..+|.+.+.. ++++|.+.||+|+|+.++++|.
T Consensus 619 ---------~----------~~--------------------~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~ 653 (693)
T PRK00227 619 ---------D----------PA--------------------PGITATFWHG------NILEVRTEDRRGALGALLGVLP 653 (693)
T ss_pred ---------c----------cc--------------------CCCCceEeeC------cEEEEEeCccccHHHHHHHHhh
Confidence 0 00 1244555542 7999999999999999999999
Q ss_pred hCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 019269 199 DYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 199 ~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
+|..|++. |.|..++|.|++... . ....++.++..+|.+
T Consensus 654 ----~~~~~~~~--~~g~~~~~~~~~~~~------~-~r~~~~~~~~~~~~~ 692 (693)
T PRK00227 654 ----DLLWITAS--TPGATMIVQAALKPG------F-DRATVERDVTRVLAG 692 (693)
T ss_pred ----hhhhHhhc--CCCcceEEEEEecCc------c-cHHHHHHHHHHHHhc
Confidence 78889988 799999999999721 1 234677777766643
No 42
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.19 E-value=1.7e-10 Score=85.08 Aligned_cols=67 Identities=28% Similarity=0.424 Sum_probs=60.5
Q ss_pred eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269 269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 340 (343)
Q Consensus 269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~ 340 (343)
|.+.|.+.||||+|++|+++|+++|++|.++++. +.++.+.|+ |++.+++|.+.+.+ ..++|+++|.
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~--f~i~~~~~~~~~~~-~~~~i~~~l~ 67 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIA--TLGERAEDV--FYVTDADGQPLDPE-RQEALRAALG 67 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEE--ecCCEEEEE--EEEECCCCCcCCHH-HHHHHHHHHH
Confidence 4689999999999999999999999999999999 888899999 99999999996544 5788888875
No 43
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.01 E-value=3.5e-10 Score=82.99 Aligned_cols=73 Identities=74% Similarity=1.132 Sum_probs=65.7
Q ss_pred eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCC----chHHHHHHHHHHcCC
Q 019269 269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGVWKLLMGW 342 (343)
Q Consensus 269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~----~~~~~~~l~~~L~~~ 342 (343)
|.+|+++.-||-.+||+|-+|+.+|+.|++|.|.+...+++...+|+|++.+..+- ++ ..++.++++..||||
T Consensus 1 nPVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~~~~~r~~i~drv~~~lmgw 77 (77)
T cd04898 1 NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLGGRQRSKVVDRVTKTLMGW 77 (77)
T ss_pred CcccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-ccchHHHHHHHHHHHHHHhcC
Confidence 35899999999999999999999999999999998899999999999999776444 66 566889999999998
No 44
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.99 E-value=5.9e-09 Score=76.48 Aligned_cols=68 Identities=35% Similarity=0.520 Sum_probs=59.9
Q ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 111 (343)
Q Consensus 43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~ 111 (343)
.|.|.++|+||+|++++++|+.+|++|.++++++..+ +..+.|++..+.+...+++++++|++.|..+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE-RALDVFYVTDSDGRPLDPERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC-EEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 6889999999999999999999999999999999754 9999999998776555667889999888764
No 45
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.89 E-value=1.5e-08 Score=74.23 Aligned_cols=66 Identities=27% Similarity=0.353 Sum_probs=58.2
Q ss_pred eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269 270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 340 (343)
Q Consensus 270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~ 340 (343)
.+.|.++|+||+|++|+.+|+++|++|.++.+. +.+++..++ |++.++++.+.+++ ..++|++.|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~--~~v~~~~~~~~~~~-~~~~l~~~l~ 67 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARIS--TTGERALDV--FYVTDSDGRPLDPE-RIARLEEALE 67 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEe--ecCCEEEEE--EEEECCCCCcCCHH-HHHHHHHHHH
Confidence 578999999999999999999999999999999 887788899 99999988875544 5788888875
No 46
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.71 E-value=1.8e-07 Score=70.51 Aligned_cols=65 Identities=22% Similarity=0.293 Sum_probs=53.1
Q ss_pred EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269 41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 112 (343)
Q Consensus 41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l 112 (343)
+.+|++.|+||||+++.++++|+++||||.+.+..+. +|.+.-.+.|..+ +...+++++.|.+..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~-~~~f~~~~~v~~~------~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVL-GGRFTLIMLVSIP------EDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEE-TTEEEEEEEEEES------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEE-cCeEEEEEEEEeC------cccHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999997 6777777877753 557788888888843
No 47
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.65 E-value=3.1e-07 Score=69.23 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=50.6
Q ss_pred eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHH
Q 019269 176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME 247 (343)
Q Consensus 176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~ 247 (343)
+.+|++.|+||||+++.++++|+++|+||.+.+.. +.++.+.-.+.++.+ ++..++|+++|.+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~--~~~~~f~~~~~v~~~------~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQA--VLGGRFTLIMLVSIP------EDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEE--EETTEEEEEEEEEES------HHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEE--EEcCeEEEEEEEEeC------cccHHHHHHHHHHH
Confidence 57899999999999999999999999999999998 677888877777632 34667888887654
No 48
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.47 E-value=5.6e-07 Score=63.77 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=57.7
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 111 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~ 111 (343)
++|+|.|||+.||-.++++++...|++|..++++| ++.|++-+|+|...... -+-+|+.|+++|.++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sT-DGkWCyiv~wVv~~~~~--~~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDST-DGRWCYIVFWVVPRPPS--IKVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEeccccc-CCcEEEEEEEEecCCCC--CcccHHHHHHHHHhc
Confidence 47999999999999999999999999999999999 57899999999875433 245788998888763
No 49
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.46 E-value=1.2e-06 Score=66.16 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=49.5
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
++|++.|+||||+.+++++.|+++|+||.+++.+.. +|.+.-...+..+ +...+.|++.|..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~-~~~F~m~~~~~~~------~~~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAIL-GTEFALTMLVEGS------WDAIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEE-cCEEEEEEEEEec------cccHHHHHHHHHH
Confidence 689999999999999999999999999999999995 6766555555432 1235677777766
No 50
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.45 E-value=3.1e-06 Score=61.06 Aligned_cols=62 Identities=27% Similarity=0.491 Sum_probs=47.3
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCC-EEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG-KVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g-~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
+.|.|.++||||+|++++++|+++|+||..+.+++..++ ..+.++...+ ....+.+.+.|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD-------EEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE-------GHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC-------CCCHHHHHHHHHc
Confidence 578999999999999999999999999999999997662 4434343332 4445666666655
No 51
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.39 E-value=1e-06 Score=66.19 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=43.8
Q ss_pred eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCC
Q 019269 270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLS 325 (343)
Q Consensus 270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~ 325 (343)
.++|.|+||||++++|+++|+++|+||.+.+.. +.+++..=. |.+.-+++..
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~--~~~~~f~~~--~~v~~p~~~~ 52 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQA--VIHGRLSLG--ILVQIPDSAD 52 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccE--EEcCeeEEE--EEEEcCCCCC
Confidence 378999999999999999999999999999988 888765555 7777666533
No 52
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.38 E-value=1.2e-06 Score=65.77 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=46.2
Q ss_pred EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHH
Q 019269 178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWM 246 (343)
Q Consensus 178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~ 246 (343)
+++|.|+||||++++++++|+++|+||.+.+.. +.++.+.-.|.+. +.+. ..+.|+++|..
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~--~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~ 62 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQA--VIHGRLSLGILVQIPDSA------DSEALLKDLLF 62 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccE--EEcCeeEEEEEEEcCCCC------CHHHHHHHHHH
Confidence 378999999999999999999999999988755 4556666666665 3321 23567777644
No 53
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.38 E-value=2.6e-06 Score=64.38 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=47.9
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP 251 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~ 251 (343)
++|++.|+||||++++|+++|+++|+||.+++.+ ..++.+.-...+..+ . ...+.|++.|.+ +..+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~--~~~~~F~m~~~~~~~--~----~~~~~l~~~l~~-~~~~ 67 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMA--ILGTEFALTMLVEGS--W----DAIAKLEAALPG-LARR 67 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceee--EEcCEEEEEEEEEec--c----ccHHHHHHHHHH-HHHH
Confidence 6899999999999999999999999999999987 355565433344422 1 124567777654 4433
No 54
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.34 E-value=8e-06 Score=58.84 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=33.0
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEE
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR 211 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t 211 (343)
|.|.|.++||||+|++++++|+++|+||.++...+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~ 35 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSS 35 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEe
Confidence 57899999999999999999999999999999985
No 55
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.12 E-value=2.2e-05 Score=58.52 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=31.5
Q ss_pred EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEE
Q 019269 178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR 211 (343)
Q Consensus 178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t 211 (343)
+|+|.|+||||++++|+++|+++|+||.+.+..+
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~ 34 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV 34 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence 4789999999999999999999999999988764
No 56
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.04 E-value=1.5e-05 Score=59.46 Aligned_cols=64 Identities=23% Similarity=0.260 Sum_probs=45.3
Q ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
+|+|.|+||||++++++++|+++|+||.+.+.++... +.+.-.+.+..+.+ ....+.+++.|..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~----~~~~~~l~~~l~~ 65 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGF----DLSREALEAAFAP 65 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCC----CCCHHHHHHHHHH
Confidence 4789999999999999999999999999999987433 33222233322211 1236778877777
No 57
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.02 E-value=1.5e-05 Score=61.61 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=46.4
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 246 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~ 246 (343)
.+|++.|+||||++++|+++|+++|+||.+.+.. +.++.+.-.+.+...+.. ...+.|++.|..
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~--~~~~~f~~~~~v~~~~~~----~~~~~L~~~l~~ 65 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQT--IMDGYFTMIMIVDISESN----LDFAELQEELEE 65 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhH--hhCCccEEEEEEEeCCCC----CCHHHHHHHHHH
Confidence 5789999999999999999999999999988876 455555544555522101 123567777654
No 58
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.98 E-value=2.8e-05 Score=60.12 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=50.9
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 112 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l 112 (343)
..|++.|+|+||++++++++|+.+|+||.+.+.++. ++.+.-.+.+..+. . ....+.+++.|....
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~-~~~f~~~~~v~~~~-~---~~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM-DGYFTMIMIVDISE-S---NLDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh-CCccEEEEEEEeCC-C---CCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999885 66665556665432 0 123567888777733
No 59
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.97 E-value=4.1e-05 Score=57.87 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=31.6
Q ss_pred EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEE
Q 019269 178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR 211 (343)
Q Consensus 178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t 211 (343)
+|+|.|+|+||++++|+++|+++|+||.+.+..+
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~ 34 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTET 34 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeee
Confidence 4789999999999999999999999999998874
No 60
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.95 E-value=0.001 Score=53.54 Aligned_cols=112 Identities=18% Similarity=0.154 Sum_probs=76.0
Q ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcccccccccc
Q 019269 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVE 122 (343)
Q Consensus 43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~~~~~ 122 (343)
.|.|...|+||=|+.++.+|..+|+||..-.|--+ +.+-+--..|.. ++ .-.+.|++ .
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt-~dFGIiRmvV~~-------~d---~A~~~Lee----~------- 62 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADT-GDFGIIRMVVDR-------PD---EAHSVLEE----A------- 62 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccc-cCcceEEEEcCC-------hH---HHHHHHHH----C-------
Confidence 58899999999999999999999999986555432 333322233322 11 11111211 0
Q ss_pred cccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCe
Q 019269 123 MVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNI 202 (343)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~gl 202 (343)
.| .|.+. -++-|...|+||=|+.|+.+|.++++
T Consensus 63 ----------------------gF------------------~Vr~~-------dVlaVEmeD~PG~l~~I~~vl~d~di 95 (142)
T COG4747 63 ----------------------GF------------------TVRET-------DVLAVEMEDVPGGLSRIAEVLGDADI 95 (142)
T ss_pred ----------------------Cc------------------EEEee-------eEEEEEecCCCCcHHHHHHHHhhcCc
Confidence 01 12221 37888899999999999999999999
Q ss_pred eEEEEEEEEeecCCEEEEEEEE
Q 019269 203 QVSYGRFSRRQRGNCEIDLFIM 224 (343)
Q Consensus 203 nI~~A~i~t~t~g~~~~d~F~v 224 (343)
|+..+..++ +..+.++-+|.+
T Consensus 96 NldYiYAFv-~ek~KAlli~r~ 116 (142)
T COG4747 96 NLDYIYAFV-TEKQKALLIVRV 116 (142)
T ss_pred Cceeeeeee-ecCceEEEEEEh
Confidence 999999987 455677754443
No 61
>PRK00194 hypothetical protein; Validated
Probab=97.94 E-value=3.6e-05 Score=59.60 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=49.5
Q ss_pred EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
.+.|+|.|+|+||++++++++|+.+|+||.+.+..+. +|.+.-.+.+..+. . +...+.+++.|..
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~-~~~~~~~~~v~~~~-~---~~~~~~l~~~l~~ 67 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM-DGYFTMIMLVDISE-S---KKDFAELKEELEE 67 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh-CCeeEEEEEEEecC-C---CCCHHHHHHHHHH
Confidence 6799999999999999999999999999999888874 66665555554331 1 1124677777766
No 62
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.93 E-value=8.8e-05 Score=56.03 Aligned_cols=63 Identities=17% Similarity=0.207 Sum_probs=47.7
Q ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-----CEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-----GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-----g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
+|+|.|+|+||++++|++.|+.+|+||.+.+..+... +.+.-.+.+..+.+ ...+.+++.|+.
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~-----~~~~~l~~~l~~ 68 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG-----TDLDALREELEE 68 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC-----CCHHHHHHHHHH
Confidence 3789999999999999999999999999999988641 44444455554321 125677777777
No 63
>PRK00194 hypothetical protein; Validated
Probab=97.91 E-value=4.4e-05 Score=59.11 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=47.5
Q ss_pred eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269 176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP 251 (343)
Q Consensus 176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~ 251 (343)
.++++|.++||||++++++++|+++|+||.+.+-. +.++.+.-.+.+.-.+.+. ..+.|++.|.+ +.+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~--~~~~~~~~~~~v~~~~~~~----~~~~l~~~l~~-l~~~ 71 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQT--IMDGYFTMIMLVDISESKK----DFAELKEELEE-LGKE 71 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhH--hhCCeeEEEEEEEecCCCC----CHHHHHHHHHH-HHHH
Confidence 57999999999999999999999999999988765 4555554444444211111 23566666644 4443
No 64
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.84 E-value=0.00019 Score=57.74 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=69.2
Q ss_pred EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeee
Q 019269 178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVV 257 (343)
Q Consensus 178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~ 257 (343)
.|+|...++||=|..++..|+++|+||..-.|. ..|+.-.--..|+ +++. -.+.|+++
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiA--dt~dFGIiRmvV~-------~~d~---A~~~Lee~---------- 62 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIA--DTGDFGIIRMVVD-------RPDE---AHSVLEEA---------- 62 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEec--cccCcceEEEEcC-------ChHH---HHHHHHHC----------
Confidence 678889999999999999999999999977776 2333222112222 1211 12233221
Q ss_pred cCCCCceeeeeeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269 258 SRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 258 ~~~~~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
+. .+....++-|..+|+||=|+.|+.+|.++++|+..+-.-
T Consensus 63 --gF--~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAF 103 (142)
T COG4747 63 --GF--TVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAF 103 (142)
T ss_pred --Cc--EEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeee
Confidence 11 134455788999999999999999999999998876544
No 65
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.77 E-value=0.00051 Score=64.83 Aligned_cols=72 Identities=7% Similarity=0.096 Sum_probs=47.8
Q ss_pred eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 019269 176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQPLRV 254 (343)
Q Consensus 176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~~~~~ 254 (343)
.++|+|.|+||||++++||++|+++|+||.+.+..+...++.+.-.+.+. +.+. ..+.|+++|.+ +..++.+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~-l~~~l~l 79 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAP-IAARFGM 79 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHH-HHHHhCc
Confidence 46899999999999999999999999999988765322223333233333 2221 24567777644 4444443
No 66
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.76 E-value=0.00088 Score=63.27 Aligned_cols=75 Identities=11% Similarity=0.105 Sum_probs=50.0
Q ss_pred CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 019269 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRV 254 (343)
Q Consensus 175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~ 254 (343)
..++|+|.|+||||+++.|+++|+++|+||.+.+..+...++.+.-.+.+..+..+ ...+.|+++|. .+..++.+
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~----~~~~~L~~~L~-~l~~~l~l 79 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLI----FNLETLRADFA-ALAEEFEM 79 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCC----CCHHHHHHHHH-HHHHHhCC
Confidence 46799999999999999999999999999999987631144432222222211111 13567877764 45554443
No 67
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.75 E-value=0.00014 Score=51.69 Aligned_cols=67 Identities=22% Similarity=0.375 Sum_probs=55.2
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHH
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME 247 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~ 247 (343)
++|+|.++|+.||=.++++++.+.|++|..+.+. |+|....-+|.|.+....+ +-+++.|+++|+.+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~s--TDGkWCyiv~wVv~~~~~~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDS--TDGRWCYIVFWVVPRPPSI--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccc--cCCcEEEEEEEEecCCCCC--cccHHHHHHHHHhc
Confidence 4799999999999999999999999999999998 7888888888886433333 23788898888653
No 68
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.75 E-value=0.00087 Score=63.08 Aligned_cols=107 Identities=12% Similarity=0.142 Sum_probs=62.9
Q ss_pred EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCccee--
Q 019269 178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVT-- 255 (343)
Q Consensus 178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~-- 255 (343)
+|+|.|+||||+++.|+++|+++|+||.+.+-+....++.+.-.+.+...+..+ ..+.|+++|.+++..+..++
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~----~~~~l~~~l~~~~~~~~~l~i~ 77 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRL----EESSLLAAFKSALAEKFEMTWE 77 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCC----CHHHHHHHHHHHHHHHhCCEEE
Confidence 689999999999999999999999999998876422335555444454222122 24567777655355444332
Q ss_pred eecCCCCceeeeeeeEEEEeCCCccHHHHHHHHHHhCCc
Q 019269 256 VVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDI 294 (343)
Q Consensus 256 ~~~~~~~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi 294 (343)
+.....+. .+-|.+.-+..=|.+|......-.+
T Consensus 78 l~~~~~~~------ki~vl~Sg~g~nl~~l~~~~~~g~l 110 (280)
T TIGR00655 78 LILADKLK------RVAILVSKEDHCLGDLLWRWYSGEL 110 (280)
T ss_pred EecCCCCc------EEEEEEcCCChhHHHHHHHHHcCCC
Confidence 21111111 2333344444455555555554444
No 69
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.74 E-value=0.00032 Score=52.99 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=46.2
Q ss_pred eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 019269 176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL 244 (343)
Q Consensus 176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L 244 (343)
.+.|.|.+.||||+|++|+.++++.|+||.+..+.+...++.+.-.|.+.. .+.+.++.+.+.|
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-----~d~~~L~~ii~~L 69 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-----KDLEHLNQIIRKL 69 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-----SSHHHHHHHHHHH
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-----CCHHHHHHHHHHH
Confidence 468999999999999999999999999999999875213567776666652 2344666665554
No 70
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.71 E-value=0.00035 Score=52.75 Aligned_cols=49 Identities=31% Similarity=0.417 Sum_probs=40.4
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEec
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTD 90 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~ 90 (343)
+.|.|.+.||||+|++|+.+++..|+||.+.++.+.. +|.+.-.|.+.-
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V 56 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV 56 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE
Confidence 4789999999999999999999999999999999974 778777777764
No 71
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.68 E-value=0.0015 Score=61.73 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=50.9
Q ss_pred CCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEe--cCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269 39 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST--TPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 111 (343)
Q Consensus 39 ~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T--~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~ 111 (343)
...+.|+|.|+||||+.+.++++|+++|+||.+.+.++ . +|.+.-.+.+... ..+..++.|++.|+..
T Consensus 4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~-~g~F~m~i~v~~~----~~~~~~~~L~~~L~~l 73 (286)
T PRK06027 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPE-TGRFFMRVEFEGD----GLIFNLETLRADFAAL 73 (286)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCC-CCeEEEEEEEEeC----CCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999999988 5 4544444444321 1122367888888763
No 72
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.64 E-value=0.0012 Score=62.32 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=33.2
Q ss_pred CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEE
Q 019269 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 210 (343)
Q Consensus 175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~ 210 (343)
..++|+|.|+|||||++.|+++|+++|+||.+.+-+
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 356899999999999999999999999999988865
No 73
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.64 E-value=7.1e-05 Score=57.50 Aligned_cols=33 Identities=12% Similarity=0.328 Sum_probs=30.4
Q ss_pred eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEE
Q 019269 176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR 208 (343)
Q Consensus 176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~ 208 (343)
..+|+|.|+||||+.+.++++|+++|+||++-.
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldis 35 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDIS 35 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHH
Confidence 468999999999999999999999999999654
No 74
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.61 E-value=0.00076 Score=49.84 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=47.6
Q ss_pred EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
|.|.+.|+||+|++|+.+++..|.||.+.+..+..+|.+...|.+.-. +.+.++.+.+.|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-----~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-----SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-----CHHHHHHHHHHHhc
Confidence 688999999999999999999999999888877556777666766542 34455555555544
No 75
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.53 E-value=0.0023 Score=60.53 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=45.7
Q ss_pred EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEE--ecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS--TTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~--T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
..+|+|.|+||||+.+++++.|+++|+||++.+.+ +..+.++ ..+.+...... ....+.|++.|..
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ff-m~i~~~~~~~~---~~~~~~l~~~l~~ 76 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFF-MRVSFHAQSAE---AASVDTFRQEFQP 76 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEE-EEEEEEcCCCC---CCCHHHHHHHHHH
Confidence 46899999999999999999999999999999987 4333444 22223321101 1124567766666
No 76
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.53 E-value=0.0012 Score=48.81 Aligned_cols=60 Identities=7% Similarity=0.128 Sum_probs=44.2
Q ss_pred EEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 019269 179 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL 244 (343)
Q Consensus 179 i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L 244 (343)
|.|.+.||||+|++|+.++++.|.||.+....+ ...+.+...|.+.. .+.+.++.+.+.|
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~vev-----~~~~~l~~i~~~L 61 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVE-QGRDYTVRDITVDA-----PSEEHAETIVAAV 61 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEE-ecCCEEEEEEEEEc-----CCHHHHHHHHHHH
Confidence 678999999999999999999999999877753 33456655566542 2344566666665
No 77
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.52 E-value=0.0041 Score=58.58 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=48.4
Q ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
+|+|.|+||||+.+.+++.|+++|+||.+.+.+... +|++.-.+.+..+... ...+.+++.|..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~----~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFR----LEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCC----CCHHHHHHHHHH
Confidence 689999999999999999999999999999998853 4666555556543211 124567766666
No 78
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.45 E-value=0.0057 Score=57.76 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=49.1
Q ss_pred EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec-CCCEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269 41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 111 (343)
Q Consensus 41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~ 111 (343)
.+.|+|.|+||||+.+++|++|+++|+||.+.+.++. .++.+.-.+.+..+.+ ...+.|++.|...
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~-----~~~~~L~~~L~~l 73 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG-----LDEDALRAGFAPI 73 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC-----CCHHHHHHHHHHH
Confidence 5789999999999999999999999999998888743 3455544555543322 1256777777773
No 79
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.35 E-value=0.00032 Score=53.90 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=48.5
Q ss_pred EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269 41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 112 (343)
Q Consensus 41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l 112 (343)
..+|+|.|+||||+.+.++++|+++|.||++-...- -+|++--.+.|..+.. ......+++.|....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtv-m~~~ftm~~lV~~~~~----~~d~~~lr~~l~~~~ 69 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTV-MDGFFTMIMLVDISKE----VVDFAALRDELAAEG 69 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHH-HhhhceeeeEEcCChH----hccHHHHHHHHHHHH
Confidence 468999999999999999999999999999544433 3777766666654321 223456666666644
No 80
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.0012 Score=60.71 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=34.3
Q ss_pred CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEE
Q 019269 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR 211 (343)
Q Consensus 175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t 211 (343)
..+++++.|+|++||+++|++.|+++|+||.++.-++
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~ 42 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD 42 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc
Confidence 4579999999999999999999999999999998774
No 81
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.15 E-value=0.0019 Score=45.10 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=40.4
Q ss_pred EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEec
Q 019269 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90 (343)
Q Consensus 44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~ 90 (343)
|.|..+|+||.+++++..|..+|+||.+..++...++..+-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46788999999999999999999999999988865577777777754
No 82
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.0026 Score=58.46 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=48.3
Q ss_pred CEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 40 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 40 ~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
...++++.|+|++|+.++|++.|+.+||||.++.-++.. .|+++.-......++ +...+.++..+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~----~~~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGG----PLDREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCC----cccHHHHHHHHHH
Confidence 568999999999999999999999999999999999643 455533222222222 1234566666666
No 83
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.14 E-value=0.0048 Score=44.60 Aligned_cols=62 Identities=23% Similarity=0.223 Sum_probs=42.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC----CCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP----DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~----~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
+.|.++|+||.|++++.+|+.+|+||.+....... ++...-.|.+... +.+.++.+.+.|++
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-----GAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 35788999999999999999999999977765432 3555555555431 23444555555544
No 84
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.14 E-value=0.0034 Score=47.19 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=42.9
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 246 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~ 246 (343)
..+.+...|+||+|++|+++|+..|+||.+..+.- +......- +.+...| +++..++|.+.|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~-te~~~~sr-iti~~~~----~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNE-RDTSGVSE-MKLTAVC----TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecc-cCCCCeeE-EEEEEEC----CHHHHHHHHHHHhC
Confidence 46899999999999999999999999999777652 22222222 2222111 24456677666643
No 85
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.12 E-value=0.0029 Score=48.32 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=43.6
Q ss_pred EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecC-CEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269 178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 246 (343)
Q Consensus 178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g-~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~ 246 (343)
.+.+...|+||+|++|++.|++.|+||.+-.+.. |.. +..--++.+. . .+++..+++.+.|.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~-Te~~~iSRmtivv~-~----~d~~~ieqI~kQL~K 67 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTH-SEQPGISNMEIQVD-I----QDDTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecc-cCCCCceEEEEEEe-C----CCHHHHHHHHHHHhC
Confidence 6899999999999999999999999999887753 332 2222222222 1 234566777776644
No 86
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.04 E-value=0.0042 Score=48.63 Aligned_cols=36 Identities=8% Similarity=0.187 Sum_probs=32.5
Q ss_pred CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEE
Q 019269 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 210 (343)
Q Consensus 175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~ 210 (343)
....|++...|+||+|++|++.|+..|+||.+-.+.
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg 42 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCL 42 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEe
Confidence 446799999999999999999999999999987765
No 87
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.03 E-value=0.0059 Score=47.81 Aligned_cols=68 Identities=16% Similarity=0.302 Sum_probs=48.4
Q ss_pred CCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269 37 KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 111 (343)
Q Consensus 37 ~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~ 111 (343)
.+.+...|.++..|+||.|+++++.|+..|+||.+-.+.-+.+ +..=-++.+. ++..++++.+.|.+.
T Consensus 4 ~~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-------~~~~i~Qi~kQL~KL 72 (96)
T PRK08178 4 TTHDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-------DDQRLEQMISQIEKL 72 (96)
T ss_pred CCCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-------CchHHHHHHHHHhCC
Confidence 3455567999999999999999999999999999877755443 3322233332 134567777777763
No 88
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.02 E-value=0.0053 Score=53.62 Aligned_cols=66 Identities=11% Similarity=0.181 Sum_probs=45.3
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 248 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L 248 (343)
..+.|.+.|+||+|++|+++|+++|+||.+-........+...-++.+. . ++...++|.+.|.+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~-~-----~~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP-G-----DDRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE-C-----CHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999987775311333332223332 1 1223677888876543
No 89
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.00 E-value=0.0072 Score=43.63 Aligned_cols=32 Identities=9% Similarity=0.195 Sum_probs=28.3
Q ss_pred EEEEECCcccHHHHHHHHHHhCCeeEEEEEEE
Q 019269 179 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 210 (343)
Q Consensus 179 i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~ 210 (343)
+.|..+|+||+|++|+.+|++.|+||.+....
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~ 32 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHD 32 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEE
Confidence 35788999999999999999999999977654
No 90
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.98 E-value=0.0079 Score=43.72 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=36.8
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCC-EEEEEEEEe
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG-KVMDLFFVT 89 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g-~~~d~f~V~ 89 (343)
..+.|..+|+||.+++++..|+.+|+||.+.......++ ...-.+.+.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 468889999999999999999999999998877664322 222345444
No 91
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.95 E-value=0.0071 Score=45.47 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=45.7
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
..+.+...|+||.|++++++|+..|+||.+-.+.-+.+ |..--++.+.. ++..++++.+.|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~------~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC------TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC------CHHHHHHHHHHHhC
Confidence 46899999999999999999999999999877764433 33322333332 34556777777766
No 92
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.94 E-value=0.0075 Score=43.41 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=34.9
Q ss_pred eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeecccc-CceEeee
Q 019269 270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMI-GDREWEV 313 (343)
Q Consensus 270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~-g~~~~dv 313 (343)
.+.+.+.|+||+|.+|+.+|+++|++|.+.... +. ++....+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~--~~~~~~~~~~ 44 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVG--PTEDPGISRI 44 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEee--ecCCCCeEEE
Confidence 467899999999999999999999999999987 54 4444444
No 93
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.92 E-value=0.0059 Score=44.25 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=33.4
Q ss_pred eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCc
Q 019269 270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGD 308 (343)
Q Consensus 270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~ 308 (343)
.+.|..+|+||.|++|+..|+++|+||.+.-+. ..++
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~--~~~~ 39 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIA--DTSE 39 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEE--ecCC
Confidence 578899999999999999999999999999887 5555
No 94
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.92 E-value=0.0036 Score=43.66 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=36.8
Q ss_pred EEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269 179 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 225 (343)
Q Consensus 179 i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~ 225 (343)
+.+..+|+||.+++++..|.++|+||.+..+.. +.++.+.-.|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~-~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAE-TRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEE-ccCCcEEEEEEEC
Confidence 357889999999999999999999999998874 3345666555553
No 95
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.91 E-value=0.0051 Score=44.12 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=30.5
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269 271 VELSGKGRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
+.|.+.|+||+|.+|+.+|+++|++|.+..+.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~ 33 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVG 33 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEe
Confidence 57889999999999999999999999999998
No 96
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.89 E-value=0.0083 Score=51.55 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=51.0
Q ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 112 (343)
Q Consensus 43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l 112 (343)
.++|...|+||.|+++++.|+..|+||.+-.+.... +|..--+|.|.. ++..++++.+.|.+..
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~------d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG------DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhcCc
Confidence 588999999999999999999999999988887765 566666666653 2456777877777743
No 97
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.86 E-value=0.0092 Score=44.30 Aligned_cols=35 Identities=26% Similarity=0.540 Sum_probs=32.3
Q ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec
Q 019269 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT 77 (343)
Q Consensus 43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~ 77 (343)
.|.|.+.||+|++++|+.+++..|.||.+.++.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 47899999999999999999999999999998763
No 98
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.84 E-value=0.0097 Score=51.14 Aligned_cols=64 Identities=6% Similarity=0.119 Sum_probs=46.2
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeec-CCEEEEEEEEecCCCCCCChHHHHHHHHHHHHH
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME 247 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~-g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~ 247 (343)
..++|...|+||.|++|+++|+++|+||.+..+.. +. .+...-+|.+.. ++...+++.+.|.+.
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~-t~~~~~sriti~V~~------d~~~i~qi~kQl~Kl 66 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGP-TEDPDLSRMTIVVVG------DDKVLEQITKQLNKL 66 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEee-cCCCCEEEEEEEEEC------CHHHHHHHHHHHhcC
Confidence 36889999999999999999999999999877763 32 234443444442 244667777776544
No 99
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.82 E-value=0.011 Score=50.93 Aligned_cols=65 Identities=6% Similarity=0.090 Sum_probs=46.7
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeec-CCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 248 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~-g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L 248 (343)
..++|...|+||.|++|++.|+++|+||.+-.+.. +. .+...-+|.+.. ++...+++.+.|.+.+
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~-te~~~~sriti~V~~------~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGP-TEDPGLSRMTIVTSG------DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeee-cCCCCEEEEEEEEEC------CHHHHHHHHHHHhccc
Confidence 47899999999999999999999999999877653 32 334443444442 2446677777765543
No 100
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.82 E-value=0.0096 Score=43.68 Aligned_cols=33 Identities=30% Similarity=0.179 Sum_probs=30.9
Q ss_pred eEEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269 270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
.+.|.+.|+||+|.+|+.+|+++|++|......
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~ 34 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQK 34 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEc
Confidence 478899999999999999999999999999876
No 101
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.81 E-value=0.013 Score=43.25 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=38.2
Q ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEec
Q 019269 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90 (343)
Q Consensus 43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~ 90 (343)
.+.|.+.|+||++++|+.+|+.+|.||......+..+|.+--.|.+..
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v 49 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT 49 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc
Confidence 578999999999999999999999999977665434565555566654
No 102
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.81 E-value=0.011 Score=51.03 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=50.8
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 112 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l 112 (343)
..++|...|+||.|+++++.|+.+|+||.+-.+.... +|..--+|.|.. ++..++++.+.|.+..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~------~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG------DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhccc
Confidence 4688999999999999999999999999988877654 566656666653 3556778877777743
No 103
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.81 E-value=0.011 Score=43.57 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=42.5
Q ss_pred EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChH-HHHHHHHHH
Q 019269 178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPS-KQNGLSSRL 244 (343)
Q Consensus 178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~-~~~~l~~~L 244 (343)
.+.|.+.|+||++++|+++++++|+||......+ ..++.+.-.|.+... +.+ .++++.++|
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v~-----~~~~~l~~l~~~L 63 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDTS-----TMNGDIDELLEEL 63 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEcC-----chHHHHHHHHHHH
Confidence 5789999999999999999999999999765432 233455544555421 222 556666665
No 104
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.81 E-value=0.0082 Score=45.26 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=37.0
Q ss_pred eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcC
Q 019269 270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 321 (343)
Q Consensus 270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~ 321 (343)
.+.+..+|+||.|++|...|+++|+||.+.... ..+..- ..|.|||...
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~--p~~~~~-~~~~f~vd~~ 51 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESR--PSKGGL-WEYVFFIDFE 51 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEE--EcCCCC-ceEEEEEEEE
Confidence 467778999999999999999999999999766 333222 2245888533
No 105
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.74 E-value=0.013 Score=43.52 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=30.7
Q ss_pred EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEE
Q 019269 178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 210 (343)
Q Consensus 178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~ 210 (343)
.|.|.+.||+|++++|+.++++.|+||.+..+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~ 34 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEID 34 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEe
Confidence 478999999999999999999999999988876
No 106
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.72 E-value=0.014 Score=42.79 Aligned_cols=46 Identities=24% Similarity=0.368 Sum_probs=35.7
Q ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEE
Q 019269 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFV 88 (343)
Q Consensus 43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V 88 (343)
-|.|.+.|++|++++++.+|+.+|+||.+....+..+ +.+.-.+.+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~ 48 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT 48 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence 4778899999999999999999999999887655433 544333444
No 107
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.72 E-value=0.012 Score=44.33 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=44.2
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 246 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~ 246 (343)
..+++...|+||.|++++++|...|+||.+..+.....++...-++.+. + +...++|.+.|.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~------~~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-S------ERPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-C------CchHHHHHHHHhc
Confidence 5789999999999999999999999999988876412333333333332 1 2345677766644
No 108
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.72 E-value=0.017 Score=41.83 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=33.8
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD 79 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~ 79 (343)
..+.|..+|+||.|++++..|..+|+||.+..++...+
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~ 39 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE 39 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 46889999999999999999999999999998877533
No 109
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.69 E-value=0.017 Score=41.66 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=37.1
Q ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEe
Q 019269 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 89 (343)
Q Consensus 43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~ 89 (343)
.+.+.++|++|.+++++..|+++++||.+....+..++...-.|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~ 48 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE 48 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence 57889999999999999999999999998887664345544344444
No 110
>PRK07431 aspartate kinase; Provisional
Probab=96.69 E-value=0.26 Score=51.32 Aligned_cols=201 Identities=18% Similarity=0.148 Sum_probs=110.7
Q ss_pred CCCEEEEEEEEc---CCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcc
Q 019269 38 PSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 114 (343)
Q Consensus 38 ~~~~~~I~V~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~ 114 (343)
..+...|.|++. +.+|+++++..+|...|+||..-. +. +.. -.|.|. ++..++.-+.|.+.+..
T Consensus 345 ~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sS--e~~-Is~vv~--------~~d~~~av~~Lh~~f~~ 411 (587)
T PRK07431 345 ETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TS--EVK-VSCVID--------AEDGDKALRAVCEAFEL 411 (587)
T ss_pred eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cC--CCE-EEEEEc--------HHHHHHHHHHHHHHhcc
Confidence 467778999984 789999999999999999997333 42 222 123333 33345555666666633
Q ss_pred cccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEE-ECCcccHHHHH
Q 019269 115 AMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIV-CQDHKGLLYDI 193 (343)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~-~~DrpGLl~~i 193 (343)
.... .++ .|-+. . ......-.+. ...+...|++. .++.+|+++++
T Consensus 412 ~~~~-------~~~---------~~~~~-~---------------~~~~~v~gIa--~~~~~~~i~l~~~~~~~g~~a~i 457 (587)
T PRK07431 412 EDSQ-------IEI---------NPTAS-G---------------QDEPEVRGVA--LDRNQAQLAIRNVPDRPGMAASI 457 (587)
T ss_pred CCcc-------ccc---------Ccccc-C---------------CCCCcEEEEE--ccCCEEEEEECCCCCCccHHHHH
Confidence 2110 001 01110 0 0011111121 12344555554 57889999999
Q ss_pred HHHHHhCCeeEEEEEEEEeecCC--EEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCceeeeeeeE
Q 019269 194 MRTLKDYNIQVSYGRFSRRQRGN--CEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPV 271 (343)
Q Consensus 194 ~~~L~~~glnI~~A~i~t~t~g~--~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~v~~~~~i 271 (343)
.+.|+++|++|..-.... ..++ ..--.|.+... +..++.++.+.|...+.. ..+.+ ... -..|
T Consensus 458 f~~l~~~~i~id~i~~~~-~~~~~~~~~isf~v~~~-----~~~~~~~~l~~l~~~~~~-~~i~~-~~~-------va~V 522 (587)
T PRK07431 458 FGALAEANISVDMIVQSQ-RCRSDGTRDISFTVPKE-----DREAAQKVLRELAKQLPG-AEVED-GPA-------IAKV 522 (587)
T ss_pred HHHHHHcCCeEEEEEecC-CCCCCCceeEEEEEcHH-----HHHHHHHHHHHHHHhcCC-ceEEE-eCC-------eEEE
Confidence 999999999998442210 1121 22222444321 111222222222222211 00100 011 1267
Q ss_pred EEEeC---CCccHHHHHHHHHHhCCceEEEEE
Q 019269 272 ELSGK---GRPLVFHDITLALKMLDICIFSAE 300 (343)
Q Consensus 272 eV~~~---DrpGLL~~I~~~l~~~gi~I~~Ak 300 (343)
.|.|. .+||++.++..+|++.||+|+...
T Consensus 523 SvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 523 SIVGAGMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred EEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 88886 899999999999999999997665
No 111
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.68 E-value=0.012 Score=44.91 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=46.8
Q ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEEecCCCcccchhHHHHHHHHHHHH
Q 019269 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 111 (343)
Q Consensus 43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~ 111 (343)
.|.++..|+||.|+++++.|+..|+||.+-.+..+.+ |..=-++.+.. | ++..++++.+.|.+.
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~--~---d~~~ieqI~kQL~Kl 68 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI--Q---DDTSLHILIKKLKQQ 68 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC--C---CHHHHHHHHHHHhCC
Confidence 6899999999999999999999999999888866543 43333344421 1 355567777777663
No 112
>PRK08577 hypothetical protein; Provisional
Probab=96.67 E-value=0.035 Score=46.45 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=41.0
Q ss_pred CCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269 172 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 225 (343)
Q Consensus 172 ~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~ 225 (343)
.....+.|.|.+.|+||+|++|+++|+++|+||.+....+...++.+.-.|.+.
T Consensus 52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve 105 (136)
T PRK08577 52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD 105 (136)
T ss_pred CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence 344578999999999999999999999999999987765322244444445554
No 113
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.66 E-value=0.013 Score=42.11 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=29.8
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269 271 VELSGKGRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
+.+.+.|+||.|.+|+..|+++|++|.+....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~ 33 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVS 33 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEE
Confidence 57889999999999999999999999999877
No 114
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.62 E-value=0.024 Score=40.66 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=44.2
Q ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec-CCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
.+.+.+.|++|++++++..|+.+|.||.+....+. .++.+.-.|.+... + ...+.+.+.|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD-----D-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC-----H-HHHHHHHHHHhC
Confidence 36788999999999999999999999998887764 35655545555431 2 344555555543
No 115
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.55 E-value=0.029 Score=40.67 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=31.2
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEE
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR 211 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t 211 (343)
+.+.+..+|+||.|+++++.|+++|+||.+.....
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~ 36 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILE 36 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEE
Confidence 46888999999999999999999999999776653
No 116
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.51 E-value=0.033 Score=41.92 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=37.1
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecC-CEEEEEEEEecCCC
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGK 229 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g-~~~~d~F~v~~~g~ 229 (343)
+.+.+..+|+||.|+++...|+++|+||.+-... ... +...-.|+++.++.
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~--p~~~~~~~~~f~vd~~~~ 53 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESR--PSKGGLWEYVFFIDFEGH 53 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEE--EcCCCCceEEEEEEEECC
Confidence 4567788999999999999999999999966533 332 23334577774443
No 117
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.50 E-value=0.024 Score=42.66 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=46.2
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEE-EEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKV-MDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~-~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
..+.+...|+||.|++++++++..|+||.+-.+-.+.++-. --++.|. ++..+++|.+.|.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-------~~~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-------SERPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-------CCchHHHHHHHHhc
Confidence 46899999999999999999999999999888876544433 2334442 13345677777766
No 118
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.44 E-value=0.012 Score=41.80 Aligned_cols=32 Identities=19% Similarity=0.044 Sum_probs=29.6
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269 271 VELSGKGRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
+.|.-+||||-|++++.+|+++|+||.+....
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~ 33 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAF 33 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEE
Confidence 67888999999999999999999999988876
No 119
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.41 E-value=0.024 Score=49.57 Aligned_cols=65 Identities=15% Similarity=0.256 Sum_probs=46.5
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 112 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l 112 (343)
..+.|.+.|+||++++++++|+..|+||.+-....+.+ |..--++.+.. ++..+++|.+.|.+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~------~~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG------DDRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC------CHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999888765433 33322232221 1233678888888844
No 120
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.41 E-value=0.015 Score=41.53 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=38.7
Q ss_pred EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEe
Q 019269 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVT 89 (343)
Q Consensus 44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~ 89 (343)
+.|.+.|++|++++++.+|+.+|+||.+....... +|...-.|.+.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~ 48 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD 48 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC
Confidence 67889999999999999999999999998887753 46776667663
No 121
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.39 E-value=0.019 Score=41.84 Aligned_cols=47 Identities=23% Similarity=0.437 Sum_probs=38.1
Q ss_pred EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec-CCCEEEEEEEEec
Q 019269 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTD 90 (343)
Q Consensus 44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~ 90 (343)
+.+..+|+||.+++++..|+++|+||.+...... .++...-+|.+..
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 4678999999999999999999999997776554 3567766676654
No 122
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.39 E-value=0.031 Score=40.04 Aligned_cols=47 Identities=23% Similarity=0.353 Sum_probs=36.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec-CCCEEEEEEEEec
Q 019269 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTD 90 (343)
Q Consensus 44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~ 90 (343)
+.+.++|+||.+++++..|+++|+||.+...... .++...-.+.+.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~ 49 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQ 49 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCC
Confidence 5788999999999999999999999998877653 2455544455443
No 123
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.35 E-value=0.023 Score=40.33 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=35.6
Q ss_pred EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEe
Q 019269 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVT 89 (343)
Q Consensus 44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~ 89 (343)
+.|..+|+||-+++++++|+++|+||.+...+... .|...-.|.+.
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve 48 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTE 48 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeC
Confidence 67888999999999999999999999977765543 25554445443
No 124
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.30 E-value=0.032 Score=41.03 Aligned_cols=46 Identities=26% Similarity=0.279 Sum_probs=34.7
Q ss_pred EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec--CCCEEEEEEEEe
Q 019269 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT--PDGKVMDLFFVT 89 (343)
Q Consensus 44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~--~~g~~~d~f~V~ 89 (343)
+.|..+|+||-|++++..|+.+|.||.+...... ..+.-.-.+.+.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~ 49 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVT 49 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEE
Confidence 6788999999999999999999999997765543 233333344443
No 125
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.29 E-value=0.005 Score=44.60 Aligned_cols=38 Identities=21% Similarity=0.144 Sum_probs=31.4
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceE
Q 019269 271 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDRE 310 (343)
Q Consensus 271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~ 310 (343)
+-+.+.||||+|.+|+.+|++.|+||.+.... +.++.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~--~~~~~a 39 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQ--TRGEIG 39 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhcc--CCCCEE
Confidence 45689999999999999999999999888766 544333
No 126
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.27 E-value=0.048 Score=37.98 Aligned_cols=46 Identities=30% Similarity=0.451 Sum_probs=36.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEe
Q 019269 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 89 (343)
Q Consensus 44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~ 89 (343)
|.|.++|+||.+++++..|..++++|.+..+....+++..-.|.+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 46 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE 46 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence 4678999999999999999999999999888775435544445444
No 127
>PRK04435 hypothetical protein; Provisional
Probab=96.23 E-value=0.066 Score=45.51 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=45.1
Q ss_pred CCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEec
Q 019269 36 PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90 (343)
Q Consensus 36 ~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~ 90 (343)
...+....|.+...|+||++++|+.+|+.+|+||..-......+|.+--.|.+..
T Consensus 64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev 118 (147)
T PRK04435 64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT 118 (147)
T ss_pred cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence 4667788999999999999999999999999999977765544676655666654
No 128
>PRK08577 hypothetical protein; Provisional
Probab=96.22 E-value=0.066 Score=44.75 Aligned_cols=69 Identities=20% Similarity=0.217 Sum_probs=48.3
Q ss_pred CCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 38 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 38 ~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
....+.|.|.+.|+||+|++++.+|+.+|.||.+....+.. ++.+.-.|.+.-+.. +..++.+.+.|.+
T Consensus 53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~----~~~l~~l~~~L~~ 122 (136)
T PRK08577 53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS----DIDLEELEEELKK 122 (136)
T ss_pred CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc----hhhHHHHHHHHHc
Confidence 34478999999999999999999999999999988877654 454444444443211 1234555555544
No 129
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.11 E-value=0.03 Score=41.49 Aligned_cols=46 Identities=15% Similarity=0.015 Sum_probs=35.1
Q ss_pred EEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEc
Q 019269 272 ELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDE 320 (343)
Q Consensus 272 eV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~ 320 (343)
-+...|+||-|++|..+|+++|+||.+.... |..+.... |.|||.-
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Sr-p~~~~~~~--~~f~id~ 48 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESR-PSRKGLWE--YEFFVDF 48 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEee-ecCCCCce--EEEEEEE
Confidence 3455799999999999999999999999544 55554444 3488853
No 130
>PRK07431 aspartate kinase; Provisional
Probab=96.10 E-value=2.2 Score=44.45 Aligned_cols=114 Identities=11% Similarity=0.092 Sum_probs=69.5
Q ss_pred CeEEEEEEEC---CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269 175 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP 251 (343)
Q Consensus 175 ~~t~i~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~ 251 (343)
+...|.|.+. +++|+++++..+|++.|+||.... + .. .-. +|.+. ++..++..+.|.+.+...
T Consensus 347 ~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se-~~I-s~vv~--------~~d~~~av~~Lh~~f~~~ 412 (587)
T PRK07431 347 NVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SE-VKV-SCVID--------AEDGDKALRAVCEAFELE 412 (587)
T ss_pred CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c--CC-CEE-EEEEc--------HHHHHHHHHHHHHHhccC
Confidence 4567888875 789999999999999999997433 2 22 211 24443 223345555566666432
Q ss_pred cc-eeeecC-----CC-Cceeeee---eeEEEE-eCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269 252 LR-VTVVSR-----GP-DTELLVA---NPVELS-GKGRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 252 ~~-~~~~~~-----~~-~~~v~~~---~~ieV~-~~DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
.. .++.+- +. -+.+... ..++|. ..++||++++|...|.++|++|.....+
T Consensus 413 ~~~~~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~ 474 (587)
T PRK07431 413 DSQIEINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQS 474 (587)
T ss_pred CcccccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence 21 111111 00 0111111 134443 4588999999999999999999998664
No 131
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.08 E-value=0.054 Score=35.75 Aligned_cols=34 Identities=38% Similarity=0.500 Sum_probs=30.8
Q ss_pred EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec
Q 019269 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT 77 (343)
Q Consensus 44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~ 77 (343)
|.+.++|++|.+++++++|..+|++|........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~ 34 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS 34 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence 4688999999999999999999999998887664
No 132
>PRK04435 hypothetical protein; Provisional
Probab=96.06 E-value=0.066 Score=45.49 Aligned_cols=71 Identities=10% Similarity=0.079 Sum_probs=48.7
Q ss_pred EeCCCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 019269 169 DNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL 244 (343)
Q Consensus 169 ~~~~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L 244 (343)
..........|.+...|+||+|++|++++++.|+||....... ..++.+.-.|.+...+. ...++.|.++|
T Consensus 62 ~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~~----~~~L~~Li~~L 132 (147)
T PRK04435 62 DEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSSM----EGDIDELLEKL 132 (147)
T ss_pred cccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCCh----HHHHHHHHHHH
Confidence 3445567789999999999999999999999999999665432 23455555566642111 12455565555
No 133
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.05 E-value=0.017 Score=42.12 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=35.4
Q ss_pred EEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269 179 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 225 (343)
Q Consensus 179 i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~ 225 (343)
+.+..+|+||.++++++.|+++|+||.+........++...-+|.++
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence 45689999999999999999999999977764311345555445554
No 134
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.02 E-value=0.044 Score=36.20 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=29.9
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269 271 VELSGKGRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
+.+.+.|+||++.+|..+|+++|++|......
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~ 32 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQR 32 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeE
Confidence 46789999999999999999999999999987
No 135
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.99 E-value=0.013 Score=43.52 Aligned_cols=70 Identities=16% Similarity=0.290 Sum_probs=50.4
Q ss_pred EEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-c-CCCCCCChHHHHHHHHHHHHHH
Q 019269 179 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-A-DGKKIVDPSKQNGLSSRLWMEL 248 (343)
Q Consensus 179 i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~-~g~~i~~~~~~~~l~~~L~~~L 248 (343)
|++.++-||-.||+++-+|+.+|+-|.+|.|.....+++...+|.+. . .+..+.......++.+.+...+
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999997544566777776653 3 3333443434455666555443
No 136
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.81 E-value=0.051 Score=39.02 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=30.2
Q ss_pred EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEE
Q 019269 178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 210 (343)
Q Consensus 178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~ 210 (343)
++.+.++|+||.+++++..|+++++||.+....
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~ 34 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQF 34 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEe
Confidence 578899999999999999999999999977765
No 137
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.78 E-value=0.086 Score=36.66 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=31.5
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccC
Q 019269 271 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIG 307 (343)
Q Consensus 271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g 307 (343)
+.|.+.|+||++.+|+..|.+++++|....+. ..+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~--~~~ 35 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTR--TDD 35 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeE--ECC
Confidence 46789999999999999999999999999988 555
No 138
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.70 E-value=0.016 Score=41.90 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=35.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEe
Q 019269 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 89 (343)
Q Consensus 44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~ 89 (343)
+.+.+.|+||++++++.+|++.|.||......+. +|.+.-.|.+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~-~~~a~~~~~~~ 46 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTR-GEIGYVVIDID 46 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCC-CCEEEEEEEcC
Confidence 6778999999999999999999999987655442 36665555544
No 139
>PRK06635 aspartate kinase; Reviewed
Probab=95.70 E-value=1.4 Score=43.43 Aligned_cols=111 Identities=21% Similarity=0.287 Sum_probs=67.5
Q ss_pred CCEEEEEEEE-cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhccccc
Q 019269 39 SDVFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMI 117 (343)
Q Consensus 39 ~~~~~I~V~~-~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~ 117 (343)
.+...|+|.+ .+++|.++++..+|.++|+||.--..+...+|..--.|.|.. ++.+...+.|.+ +....
T Consensus 260 ~~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~--------~~~~~a~~~L~~-~~~~~- 329 (404)
T PRK06635 260 KDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR--------DDLEKALELLEE-VKDEI- 329 (404)
T ss_pred CCeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH--------HHHHHHHHHHHH-HHHHc-
Confidence 4445566665 778999999999999999999943332222223333455432 222333333333 11000
Q ss_pred ccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEE---CCcccHHHHHH
Q 019269 118 SCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVC---QDHKGLLYDIM 194 (343)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~---~DrpGLl~~i~ 194 (343)
. ...+.+. .+...++|.+ +++||.++++.
T Consensus 330 ---------------------~-----------------------~~~i~~~----~~ia~isvvG~~~~~~~g~~a~i~ 361 (404)
T PRK06635 330 ---------------------G-----------------------AESVTYD----DDIAKVSVVGVGMRSHPGVAAKMF 361 (404)
T ss_pred ---------------------C-----------------------cceEEEc----CCeEEEEEECCCCCCCchHHHHHH
Confidence 0 0112221 2456777766 68999999999
Q ss_pred HHHHhCCeeEEEE
Q 019269 195 RTLKDYNIQVSYG 207 (343)
Q Consensus 195 ~~L~~~glnI~~A 207 (343)
++|++.|+||...
T Consensus 362 ~~La~~~Ini~~i 374 (404)
T PRK06635 362 EALAEEGINIQMI 374 (404)
T ss_pred HHHHHCCCCEEEE
Confidence 9999999999853
No 140
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.64 E-value=0.081 Score=41.12 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=45.7
Q ss_pred eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCc--hHHHHHHHHHHcC
Q 019269 270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPR--NKIEEGVWKLLMG 341 (343)
Q Consensus 270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~--~~~~~~l~~~L~~ 341 (343)
.+-+..+|+||-|+++-..|+++|||+.+.... |..+..-+ |.|||. -+|. .++ .+..++|++.|-.
T Consensus 16 slif~l~~~pGsL~~vL~~Fa~~~INLt~IeSR-P~~~~~~~--Y~FfVD-ieg~-~~~~~~~~l~~L~~~~~~ 84 (90)
T cd04931 16 SLIFSLKEEVGALAKVLRLFEEKDINLTHIESR-PSRLNKDE--YEFFIN-LDKK-SAPALDPIIKSLRNDIGA 84 (90)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEec-cCCCCCce--EEEEEE-EEcC-CCHHHHHHHHHHHHHhCC
Confidence 455556899999999999999999999998876 33333322 458885 4454 222 2245666666543
No 141
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.59 E-value=0.069 Score=38.85 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=35.9
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 225 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~ 225 (343)
+.+.+..+|+||.+.+++++|+++|+||.+....-...++...-.|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 4688899999999999999999999999977654211233444344443
No 142
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.53 E-value=0.053 Score=39.14 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=35.7
Q ss_pred CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269 185 DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 246 (343)
Q Consensus 185 DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~ 246 (343)
|+||.|.+|+++|...|+||.+..+.....++...-++.+..+ +...+.|.+.|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~------~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD------DREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-------CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC------chhHHHHHHHHhc
Confidence 7899999999999999999998888742234444433333321 1244566666543
No 143
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.42 E-value=0.11 Score=37.84 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=37.9
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec-CCCEEEEEEEEe
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVT 89 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~ 89 (343)
+.+.+..+|+||.+++++..|+.+|+||.+....-. .++...-.|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 478899999999999999999999999997765443 245665556654
No 144
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.40 E-value=0.048 Score=40.01 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=29.8
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269 271 VELSGKGRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
+.|.-+|+||-|++++..|+++|+||.+....
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~ 33 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTA 33 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEec
Confidence 57888999999999999999999999998777
No 145
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.33 E-value=0.22 Score=38.66 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=46.7
Q ss_pred CCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 019269 173 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 248 (343)
Q Consensus 173 ~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L 248 (343)
....+.|.+..+|+||-|+++-..|+.+|+|+. +|.++..... -.=.|+|+-+|. .++ ..+.+-+.|...|
T Consensus 11 ~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt--~IeSRP~~~~~~~Y~FfVDieg~--~~~-~~~~~l~~L~~~~ 82 (90)
T cd04931 11 KNGVISLIFSLKEEVGALAKVLRLFEEKDINLT--HIESRPSRLNKDEYEFFINLDKK--SAP-ALDPIIKSLRNDI 82 (90)
T ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEE--EEEeccCCCCCceEEEEEEEEcC--CCH-HHHHHHHHHHHHh
Confidence 334577777779999999999999999999999 6665443222 223478875553 222 4444444544444
No 146
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=95.24 E-value=0.1 Score=46.93 Aligned_cols=53 Identities=13% Similarity=0.230 Sum_probs=43.0
Q ss_pred CCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269 173 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 225 (343)
Q Consensus 173 ~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~ 225 (343)
.+....+.+.-.|+||.+..|+.+|.++|+||...++.....|+.++-+..++
T Consensus 145 ~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD 197 (208)
T TIGR00719 145 RGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEID 197 (208)
T ss_pred cCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeC
Confidence 34456777888999999999999999999999999998655677777555554
No 147
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.14 E-value=0.23 Score=36.68 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=39.8
Q ss_pred EEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCC-EEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 019269 179 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN-CEIDLFIMQADGKKIVDPSKQNGLSSRLW 245 (343)
Q Consensus 179 i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~-~~~d~F~v~~~g~~i~~~~~~~~l~~~L~ 245 (343)
+.+..+|+||-|+++..+|+++|+||.+- .++...+ ...-.|++.-++.. . +...+.+.+.|.
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I--~Srp~~~~~~~~~f~id~~~~~-~-~~~~~~~l~~l~ 65 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKI--ESRPSRKGLWEYEFFVDFEGHI-D-DPDVKEALEELK 65 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEE--EeeecCCCCceEEEEEEEECCC-C-CHHHHHHHHHHH
Confidence 34556899999999999999999999944 4433322 33344777644421 1 234444545543
No 148
>PRK07334 threonine dehydratase; Provisional
Probab=95.10 E-value=0.16 Score=50.34 Aligned_cols=65 Identities=20% Similarity=0.219 Sum_probs=49.0
Q ss_pred EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec----CCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT----PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~----~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
...|.|.+.||+|+|++|+.+|+..+.||.+.+..+. .++.+.-.|.+.-. +.+.++++.+.|++
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-----d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-----DAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999988764 45665555555431 34455666555555
No 149
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=95.08 E-value=0.082 Score=39.30 Aligned_cols=49 Identities=10% Similarity=0.013 Sum_probs=36.6
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCC
Q 019269 271 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDG 323 (343)
Q Consensus 271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g 323 (343)
+-+..+|+||-|+++-..|+++|||+.+.... |..+..-+ |.|||. -+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSR-P~~~~~~~--y~Ffvd-~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESR-PSRRNGSE--YEFFVD-CEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECC-CCCCCCce--EEEEEE-EEc
Confidence 34555899999999999999999999998876 44443333 458884 345
No 150
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.06 E-value=0.08 Score=39.56 Aligned_cols=51 Identities=14% Similarity=0.039 Sum_probs=37.8
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCC
Q 019269 271 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLS 325 (343)
Q Consensus 271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~ 325 (343)
+-+..+|+||-|+++-..|+++|+|+.+.... |..+..-+ |.|||. -+|..
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSR-P~~~~~~~--y~F~id-~e~~~ 53 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESR-KSKRRSSE--FEIFVD-CECDQ 53 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEec-cCCCCCce--EEEEEE-EEcCH
Confidence 34455899999999999999999999999876 34444433 458885 34543
No 151
>PRK07334 threonine dehydratase; Provisional
Probab=95.06 E-value=0.17 Score=50.10 Aligned_cols=66 Identities=9% Similarity=0.068 Sum_probs=47.6
Q ss_pred eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEee---cCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269 176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ---RGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 246 (343)
Q Consensus 176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t---~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~ 246 (343)
.+.|.|.+.||+|+|++|+.++++.++||.+....+.. .++.+.-.|.+. +.+.++++++.+.|+.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~-----V~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE-----TRDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE-----eCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999999988775310 234544445554 2234566777777643
No 152
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.04 E-value=0.11 Score=37.51 Aligned_cols=55 Identities=22% Similarity=0.342 Sum_probs=37.0
Q ss_pred CCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 50 DRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 50 Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
|+||.|.+++++|...|+||.+-.+....+ +..--.+.+.. ++...+.|.+.|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~------~~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG------DDREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-------CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee------CchhHHHHHHHHhc
Confidence 789999999999999999999988877544 44333344432 12345666666665
No 153
>PRK06635 aspartate kinase; Reviewed
Probab=94.95 E-value=0.36 Score=47.70 Aligned_cols=107 Identities=18% Similarity=0.122 Sum_probs=63.6
Q ss_pred eEEEEEE-ECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 019269 176 HTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRV 254 (343)
Q Consensus 176 ~t~i~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~ 254 (343)
...|+|. ..++||+++++..+|++.|+||....... +.++...-.|.+.. +..+...+.|.+ +......
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~-~~~~~~~is~~v~~--------~~~~~a~~~L~~-~~~~~~~ 331 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNV-SEDGKTDITFTVPR--------DDLEKALELLEE-VKDEIGA 331 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecC-CCCCceeEEEEEcH--------HHHHHHHHHHHH-HHHHcCc
Confidence 3445544 46789999999999999999999543221 11112333355431 122233333433 1111111
Q ss_pred eeecCCCCceeee---eeeEEEEe---CCCccHHHHHHHHHHhCCceEEEEE
Q 019269 255 TVVSRGPDTELLV---ANPVELSG---KGRPLVFHDITLALKMLDICIFSAE 300 (343)
Q Consensus 255 ~~~~~~~~~~v~~---~~~ieV~~---~DrpGLL~~I~~~l~~~gi~I~~Ak 300 (343)
..+.+ -..+.|.+ .|+||++++|.++|++.|+||....
T Consensus 332 --------~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 332 --------ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred --------ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 01111 12567766 5999999999999999999998853
No 154
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.84 E-value=0.22 Score=52.88 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=47.3
Q ss_pred CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 019269 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL 244 (343)
Q Consensus 175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L 244 (343)
....|.|.+.||+|||++|+.+++..++||.+..+.+...++.+.-.|.+. +.+...+.++...|
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie-----V~~~~~L~~l~~~L 729 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE-----IYNLQVLGRVLGKL 729 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence 345889999999999999999999999999988876321145555556554 23344566666665
No 155
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=94.81 E-value=0.025 Score=43.30 Aligned_cols=60 Identities=22% Similarity=0.161 Sum_probs=42.2
Q ss_pred EEEEEEcC-CCcHHHHHHHHHHhCCCeEEEEEEEecCC----------CEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 43 LLKLSCYD-RKGLLYDVTAVLCELELTIEKVKISTTPD----------GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 43 ~I~V~~~D-r~GLl~~i~~~L~~~glnI~~A~i~T~~~----------g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
.|+|.++| ..|++++++++|+.+|+||. +|.+..+ ....-.|.|..+. ...+.+++.|..
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~--~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~------~~~~~lr~~L~~ 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNID--RIRRLSGRVPLEEQDDSPKACVEFSVRGQP------ADLEALRAALLE 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHH--HHHHhhccccccccCCCCcEEEEEEEeCCC------CCHHHHHHHHHH
Confidence 48999999 99999999999999999998 4433311 1334456665321 234677777765
No 156
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=94.60 E-value=0.13 Score=46.22 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=42.2
Q ss_pred eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCch
Q 019269 270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN 329 (343)
Q Consensus 270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~ 329 (343)
.+-+.-.||||.+..|+..|.++||||..+.+.|...|+.| .++..- +++++++
T Consensus 150 ~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~A-----i~vl~v-D~~v~~~ 203 (208)
T TIGR00719 150 AILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIA-----LLTIEI-DKNIDDH 203 (208)
T ss_pred EEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEE-----EEEEEe-CCCCCHH
Confidence 56677799999999999999999999999999976677766 344444 3445544
No 157
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.56 E-value=4.7 Score=39.77 Aligned_cols=107 Identities=21% Similarity=0.308 Sum_probs=66.2
Q ss_pred CCEEEEEEE---EcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhccc
Q 019269 39 SDVFLLKLS---CYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA 115 (343)
Q Consensus 39 ~~~~~I~V~---~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~ 115 (343)
.+...|+|. ..+++|.++++..+|..+|+||.. +.+...+.. -.|.|. .+..++..+.|.+.+..
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~--i~~~~s~~~-Is~~V~--------~~d~~~a~~~L~~~~~~- 325 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDL--ISQTPSETS-ISLTVD--------ETDADEAVRALKDQSGA- 325 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEE--EEcCCCCce-EEEEEe--------HHHHHHHHHHHHHHHHh-
Confidence 445568887 467899999999999999999983 333111111 124442 22233333333332210
Q ss_pred ccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEEC---CcccHHHH
Q 019269 116 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYD 192 (343)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~---DrpGLl~~ 192 (343)
. . ...+.+ ..+...|.|.+. ++||++++
T Consensus 326 ------------~----------~-----------------------~~~i~~----~~~~a~IsvVG~~~~~~~g~~a~ 356 (401)
T TIGR00656 326 ------------A----------G-----------------------LDRVEV----EEGLAKVSIVGAGMVGAPGVASE 356 (401)
T ss_pred ------------c----------C-----------------------CceEEE----eCCeEEEEEECCCcccCccHHHH
Confidence 0 0 011222 234567788774 78999999
Q ss_pred HHHHHHhCCeeEEE
Q 019269 193 IMRTLKDYNIQVSY 206 (343)
Q Consensus 193 i~~~L~~~glnI~~ 206 (343)
+..+|++.|+||..
T Consensus 357 i~~~L~~~gIni~~ 370 (401)
T TIGR00656 357 IFSALEEKNINILM 370 (401)
T ss_pred HHHHHHHCCCcEEE
Confidence 99999999999983
No 158
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=94.28 E-value=0.16 Score=43.69 Aligned_cols=42 Identities=14% Similarity=0.318 Sum_probs=35.9
Q ss_pred EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEE
Q 019269 178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEI 219 (343)
Q Consensus 178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~ 219 (343)
-+.+.+.++||.|.+++++++++|.||..|+.+...+|..+.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~ 45 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKAL 45 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEE
Confidence 477889999999999999999999999999988644554555
No 159
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.18 E-value=0.36 Score=51.35 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=48.3
Q ss_pred EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC-CCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
...|.|.+.||+|+|++|+.+++..++||.+.++.+.. ++.+.-.|.|.-. +...+.++-..|++
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-----~~~~L~~l~~~L~~ 731 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-----NLQVLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence 35888999999999999999999999999999987744 5766556665432 24445555555544
No 160
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=94.08 E-value=0.39 Score=50.96 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=47.8
Q ss_pred EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
...|.|.+.||+|+|++|+.+++..++||.+.+..+..++.+...|.+.-. +...+++|-..|+.
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-----DRVHLANIMRKIRV 690 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 458889999999999999999999999999999877555665555555431 23445555444443
No 161
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.05 E-value=1.4 Score=43.38 Aligned_cols=105 Identities=24% Similarity=0.224 Sum_probs=64.4
Q ss_pred CeEEEEEE---ECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC-
Q 019269 175 GHTLVQIV---CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ- 250 (343)
Q Consensus 175 ~~t~i~V~---~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~- 250 (343)
+...|+|. ..+++|+++++..+|++.|+||..... +..+ ..-.|.+.. +..++..+.|.+.+..
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~---~~s~-~~Is~~V~~--------~d~~~a~~~L~~~~~~~ 326 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQ---TPSE-TSISLTVDE--------TDADEAVRALKDQSGAA 326 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEc---CCCC-ceEEEEEeH--------HHHHHHHHHHHHHHHhc
Confidence 45677777 467899999999999999999984322 1111 111245531 1223334444443311
Q ss_pred C-cceeeecCCCCceeeeeeeEEEEeC---CCccHHHHHHHHHHhCCceEEEE
Q 019269 251 P-LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSA 299 (343)
Q Consensus 251 ~-~~~~~~~~~~~~~v~~~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~A 299 (343)
. ..+.. .+. + ..|.|.+. ++||+++++.++|.+.|+||...
T Consensus 327 ~~~~i~~-~~~----~---a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i 371 (401)
T TIGR00656 327 GLDRVEV-EEG----L---AKVSIVGAGMVGAPGVASEIFSALEEKNINILMI 371 (401)
T ss_pred CCceEEE-eCC----e---EEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence 0 00100 111 1 25667775 89999999999999999999853
No 162
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.96 E-value=0.44 Score=50.52 Aligned_cols=64 Identities=8% Similarity=0.123 Sum_probs=46.6
Q ss_pred CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 019269 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL 244 (343)
Q Consensus 175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L 244 (343)
..+.|.|.+.||+|+|++|+.+++..++||.++...+ ..++.+.-.|.+. +.+.+.+..|...|
T Consensus 625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~ie-----V~~~~~L~~i~~~L 688 (702)
T PRK11092 625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEE-KDGRVYSAFIRLT-----ARDRVHLANIMRKI 688 (702)
T ss_pred eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEE-cCCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence 3458899999999999999999999999999888753 2334555455554 22344566666665
No 163
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=93.84 E-value=0.45 Score=35.25 Aligned_cols=48 Identities=8% Similarity=0.250 Sum_probs=35.1
Q ss_pred EEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCC
Q 019269 179 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADG 228 (343)
Q Consensus 179 i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g 228 (343)
+.+..+|+||-|+++-..|+.+|+|+. +|.++...+. ..=.|+|+-+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt--~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLT--HIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEE--EEECCCCCCCCceEEEEEEEEc
Confidence 445558999999999999999999999 6665443322 23347787444
No 164
>PRK11899 prephenate dehydratase; Provisional
Probab=93.73 E-value=0.24 Score=46.62 Aligned_cols=53 Identities=9% Similarity=-0.012 Sum_probs=39.5
Q ss_pred eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCC
Q 019269 269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLS 325 (343)
Q Consensus 269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~ 325 (343)
+.+-+..+|+||.|+++-.+|+++|||+.+..-. |+.+..-+ |.|||. -+|..
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSR-P~~~~~~~--Y~F~id-~eg~~ 247 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESY-MVGGSFTA--TQFYAD-IEGHP 247 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEee-ecCCCCce--EEEEEE-EECCC
Confidence 4455566899999999999999999999998876 44444433 348884 55654
No 165
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=93.61 E-value=0.27 Score=42.32 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=36.4
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCE
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK 81 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~ 81 (343)
.-+.+.+.|+||.|.++++.++++|.||..|+.|...+|.
T Consensus 3 ~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~ 42 (218)
T COG1707 3 RGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGE 42 (218)
T ss_pred ceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCc
Confidence 3578899999999999999999999999999999987774
No 166
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=93.28 E-value=0.72 Score=48.91 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=46.0
Q ss_pred CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 019269 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL 244 (343)
Q Consensus 175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L 244 (343)
..+.|.|.+.||+|+|++|+.+++..++||.+..+.+ ..++.+.-.|.+. +.+-..+..|...|
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~-~~~~~~~~~~~ie-----V~~~~~L~~ii~~L 672 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKT-YGKREAILNITVE-----IKNYKHLLKIMLKI 672 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEE-cCCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence 4568899999999999999999999999999888763 2234444445444 22344556665555
No 167
>PRK06291 aspartate kinase; Provisional
Probab=93.26 E-value=1.9 Score=43.64 Aligned_cols=109 Identities=18% Similarity=0.100 Sum_probs=66.4
Q ss_pred CeEEEEEEEC---CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269 175 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP 251 (343)
Q Consensus 175 ~~t~i~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~ 251 (343)
+...|+|.+. +.+|+++++..+|+++|+||...... +.. .--.|.+.. +..++..+.|.+.+...
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~--sse--~sIsf~V~~--------~d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQG--SSE--SNISLVVDE--------ADLEKALKALRREFGEG 387 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEec--CCC--ceEEEEEeH--------HHHHHHHHHHHHHHHHh
Confidence 4567788764 68999999999999999999844221 111 111244442 12223334444444321
Q ss_pred cceeeecCCCCceeeeeeeEEEEeC---CCccHHHHHHHHHHhCCceEEEEEe
Q 019269 252 LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEI 301 (343)
Q Consensus 252 ~~~~~~~~~~~~~v~~~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~AkI 301 (343)
....+... ..+ ..|.|.+. +++|++.++..+|++.||+|....-
T Consensus 388 ~~~~i~~~---~~~---a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isq 434 (465)
T PRK06291 388 LVRDVTFD---KDV---CVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQ 434 (465)
T ss_pred cCcceEEe---CCE---EEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEe
Confidence 00000000 001 25777776 7999999999999999999986553
No 168
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=93.23 E-value=0.65 Score=49.24 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=40.9
Q ss_pred EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEe
Q 019269 41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 89 (343)
Q Consensus 41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~ 89 (343)
.+.|.|.+.||+|+|++|+.+++..+.||.+.++.+..++.+.-.|.|.
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie 658 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE 658 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE
Confidence 4588899999999999999999999999999998775556665555554
No 169
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.12 E-value=0.057 Score=41.31 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=27.4
Q ss_pred EEEEEECC-cccHHHHHHHHHHhCCeeEEEE
Q 019269 178 LVQIVCQD-HKGLLYDIMRTLKDYNIQVSYG 207 (343)
Q Consensus 178 ~i~V~~~D-rpGLl~~i~~~L~~~glnI~~A 207 (343)
+|+|.|+| +.|++++++++|+++|+||.+.
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I 31 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRI 31 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 47899999 9999999999999999999743
No 170
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.06 E-value=0.26 Score=40.11 Aligned_cols=51 Identities=14% Similarity=0.009 Sum_probs=37.6
Q ss_pred eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCC
Q 019269 270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL 324 (343)
Q Consensus 270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~ 324 (343)
.+-+..+|+||-|++|-..|+++|||+.+.... ..+..-.+ |.|||. .+|.
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESR--P~~~~~~e-Y~FfId-ieg~ 93 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESR--PSRKEGGD-LEVLVR-CEVH 93 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECC--cCCCCCce-EEEEEE-EEeC
Confidence 445555899999999999999999999999877 44333333 458874 3454
No 171
>PRK11899 prephenate dehydratase; Provisional
Probab=93.06 E-value=0.69 Score=43.57 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=40.8
Q ss_pred eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCCC
Q 019269 176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGK 229 (343)
Q Consensus 176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g~ 229 (343)
.|.|.+..+|+||.|+++-.+|+++|+|+. +|.++..++. ..=.|+++-+|.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLt--kIeSRP~~~~~~~Y~F~id~eg~ 246 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMT--KLESYMVGGSFTATQFYADIEGH 246 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCee--eEEeeecCCCCceEEEEEEEECC
Confidence 577777789999999999999999999999 6766654433 334688886654
No 172
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.00 E-value=0.83 Score=33.08 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=25.9
Q ss_pred EEEEEcCCCcHHHHHHHHHHhCCCeEEEEEE
Q 019269 44 LKLSCYDRKGLLYDVTAVLCELELTIEKVKI 74 (343)
Q Consensus 44 I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i 74 (343)
+.|.-+||||-|.+++.+++. |.||.+-+-
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~ 30 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHY 30 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEE
Confidence 357789999999999999999 999996544
No 173
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.75 E-value=0.18 Score=50.14 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=47.4
Q ss_pred eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHH
Q 019269 269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 337 (343)
Q Consensus 269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~ 337 (343)
..|-|.-.|+||.+..|+..|+++|+||...+.. ..|+.+ +++.+-++ +++++ ..++|++
T Consensus 339 ~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~--~~~~~A-----~~iie~D~-~~~~~-~~~~i~~ 398 (409)
T PRK11790 339 HRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQ--TDGEIG-----YVVIDVDA-DYAEE-ALDALKA 398 (409)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheec--cCCCEE-----EEEEEeCC-CCcHH-HHHHHHc
Confidence 4678889999999999999999999999999999 888555 56666666 44434 5676663
No 174
>PRK06291 aspartate kinase; Provisional
Probab=92.62 E-value=13 Score=37.65 Aligned_cols=107 Identities=18% Similarity=0.235 Sum_probs=65.7
Q ss_pred CCEEEEEEEEc---CCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhccc
Q 019269 39 SDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA 115 (343)
Q Consensus 39 ~~~~~I~V~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~ 115 (343)
.+...|+|.+. +.+|+++++..+|..+|+||.--...+ .+.- -.|.|.. ...++..+.|.+.+...
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s--se~s-Isf~V~~--------~d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS--SESN-ISLVVDE--------ADLEKALKALRREFGEG 387 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC--CCce-EEEEEeH--------HHHHHHHHHHHHHHHHh
Confidence 34567788764 689999999999999999998432222 2211 1244432 22233333333333210
Q ss_pred ccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEEC---CcccHHHH
Q 019269 116 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYD 192 (343)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~---DrpGLl~~ 192 (343)
. ...|.+. .+...|.|.|. +++|+.++
T Consensus 388 ~----------------------------------------------~~~i~~~----~~~a~IsvvG~gm~~~~gv~~r 417 (465)
T PRK06291 388 L----------------------------------------------VRDVTFD----KDVCVVAVVGAGMAGTPGVAGR 417 (465)
T ss_pred c----------------------------------------------CcceEEe----CCEEEEEEEcCCccCCcChHHH
Confidence 0 0012222 23567777775 78999999
Q ss_pred HHHHHHhCCeeEEE
Q 019269 193 IMRTLKDYNIQVSY 206 (343)
Q Consensus 193 i~~~L~~~glnI~~ 206 (343)
+..+|++.|+||..
T Consensus 418 if~aL~~~~I~v~~ 431 (465)
T PRK06291 418 IFSALGESGINIKM 431 (465)
T ss_pred HHHHHHHCCCCEEE
Confidence 99999999999983
No 175
>PRK08210 aspartate kinase I; Reviewed
Probab=92.51 E-value=3.5 Score=40.76 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=62.3
Q ss_pred CeEEEEEEECCc-ccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcc
Q 019269 175 GHTLVQIVCQDH-KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR 253 (343)
Q Consensus 175 ~~t~i~V~~~Dr-pGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~ 253 (343)
+...|+|...+. ||.+++|..+|+++|+||...... . .. -+|.+.. +..+++.+.|.+ +.. .
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~---~-~~--is~~v~~--------~~~~~a~~~l~~-~~~--~ 332 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF---P-TE--VVFTVSD--------EDSEKAKEILEN-LGL--K 332 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec---C-ce--EEEEEcH--------HHHHHHHHHHHH-hCC--c
Confidence 445667766555 999999999999999999955321 1 11 1344431 122334333333 111 1
Q ss_pred eeeecCCCCceeeeeeeEEEEeC---CCccHHHHHHHHHHhCCceEEE
Q 019269 254 VTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFS 298 (343)
Q Consensus 254 ~~~~~~~~~~~v~~~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~ 298 (343)
+.+ ... + ..|.|.+. ++||++.++..+|++.|++|..
T Consensus 333 v~~-~~~----~---a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 333 PSV-REN----C---AKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred EEE-eCC----c---EEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 111 111 1 25667765 8999999999999999999975
No 176
>PRK06382 threonine dehydratase; Provisional
Probab=92.17 E-value=1.1 Score=44.48 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=51.1
Q ss_pred CCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEE----ecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 35 SPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS----TTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 35 ~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~----T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
...+...+.+.|..+|+||.|++++..|..+|.||.+-... ....+...-+|.|... +++..+.|.+.|++
T Consensus 324 ~~~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~ 398 (406)
T PRK06382 324 LENLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE 398 (406)
T ss_pred HHhcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 45566778999999999999999999999999999976654 2235566666766542 23334456555544
No 177
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=92.01 E-value=0.59 Score=43.85 Aligned_cols=56 Identities=9% Similarity=-0.017 Sum_probs=41.7
Q ss_pred eeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCC
Q 019269 268 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 327 (343)
Q Consensus 268 ~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~ 327 (343)
.|.+-+..+|+||-|+++-.+|+.+|||+.+.... |+.+.--.-. ||| |-.|..=+
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESR-P~k~~~~~Y~--F~i-D~eg~~~~ 249 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESR-PLKTGLGEYL--FFI-DIEGHIDD 249 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeec-ccCCCCeeEE--EEE-EEecCcCc
Confidence 45677777899999999999999999999998876 4554444444 777 45555433
No 178
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.99 E-value=0.94 Score=32.67 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=29.2
Q ss_pred CCEEEEEEEEc----CCCcHHHHHHHHHHhCCCeEEEEE
Q 019269 39 SDVFLLKLSCY----DRKGLLYDVTAVLCELELTIEKVK 73 (343)
Q Consensus 39 ~~~~~I~V~~~----Dr~GLl~~i~~~L~~~glnI~~A~ 73 (343)
.+...|+|.++ |.||+.+++++.|+..|+||.-..
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 45678999988 799999999999999999998433
No 179
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.91 E-value=0.5 Score=46.98 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=42.7
Q ss_pred CCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEe
Q 019269 38 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 89 (343)
Q Consensus 38 ~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~ 89 (343)
..+...|.+.-+|+||.+++++.+|+++|+||-.-+.++. ++.++-+|-+.
T Consensus 335 ~~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~-~~~A~~iie~D 385 (409)
T PRK11790 335 HPGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTD-GEIGYVVIDVD 385 (409)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccC-CCEEEEEEEeC
Confidence 3467788889999999999999999999999987788774 67887666554
No 180
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=91.89 E-value=0.85 Score=48.04 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=44.0
Q ss_pred cccCCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEe
Q 019269 31 FFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 89 (343)
Q Consensus 31 ~~~~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~ 89 (343)
.|.......=.+.|.|.+.||+|+|++|+.+|+..+.||.+....+..++.+.-.|.+.
T Consensus 617 ~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~ 675 (701)
T COG0317 617 SWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE 675 (701)
T ss_pred EecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE
Confidence 45555444455689999999999999999999999999998888775344443334443
No 181
>PLN02551 aspartokinase
Probab=91.79 E-value=3.9 Score=41.97 Aligned_cols=110 Identities=16% Similarity=0.205 Sum_probs=65.4
Q ss_pred CCeEEEEEEEC---CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHH---HHH
Q 019269 174 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL---WME 247 (343)
Q Consensus 174 ~~~t~i~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L---~~~ 247 (343)
.+.+.|+|.+. +.+|+++++...|+++|++|... .+ .. .--.|.+..+. +.. .+.+++.+ ...
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ss--Se--~sIs~~v~~~~--~~~---~~~i~~~l~~l~~e 432 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--AT--SE--VSISLTLDPSK--LWS---RELIQQELDHLVEE 432 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--ec--cC--CEEEEEEehhH--hhh---hhhHHHHHHHHHHH
Confidence 34577788765 68999999999999999999944 32 21 11235555221 111 11222222 122
Q ss_pred HcCCcceeeecCCCCceeeeeeeEEEEeC--CCccHHHHHHHHHHhCCceEEEEEee
Q 019269 248 LLQPLRVTVVSRGPDTELLVANPVELSGK--GRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 248 L~~~~~~~~~~~~~~~~v~~~~~ieV~~~--DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
|.....+.+ . ..+ ..|.|.|. .+||++.++-.+|++.||||......
T Consensus 433 l~~~~~V~v-~----~~v---AiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqg 481 (521)
T PLN02551 433 LEKIAVVNL-L----QGR---SIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQG 481 (521)
T ss_pred hhcCCeEEE-e----CCE---EEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEec
Confidence 321111111 0 111 24556554 78999999999999999999887654
No 182
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=91.70 E-value=1.1 Score=47.18 Aligned_cols=46 Identities=22% Similarity=0.143 Sum_probs=37.4
Q ss_pred EEEEeC-CCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEE
Q 019269 166 VTIDNS-LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR 211 (343)
Q Consensus 166 V~i~~~-~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t 211 (343)
|.++.+ .....+.|.|.+.||+|+|.+|+++|+..++||......+
T Consensus 616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~ 662 (701)
T COG0317 616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRS 662 (701)
T ss_pred EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccc
Confidence 344444 2345678999999999999999999999999999777653
No 183
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.41 E-value=1.7 Score=32.30 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=35.3
Q ss_pred EEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCC-EEEEEEEEecCCC
Q 019269 179 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN-CEIDLFIMQADGK 229 (343)
Q Consensus 179 i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~-~~~d~F~v~~~g~ 229 (343)
+.+..+|+||-|+++-..|+.+|+|+. +|.++...+ ...=.|+|+-+|.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~--~IeSRP~~~~~~~y~F~id~e~~ 52 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVV--HIESRKSKRRSSEFEIFVDCECD 52 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEE--EEEeccCCCCCceEEEEEEEEcC
Confidence 445568999999999999999999999 666544322 2333578874443
No 184
>PRK08210 aspartate kinase I; Reviewed
Probab=91.31 E-value=16 Score=36.05 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=27.3
Q ss_pred CCEEEEEEEEcCC-CcHHHHHHHHHHhCCCeEEEE
Q 019269 39 SDVFLLKLSCYDR-KGLLYDVTAVLCELELTIEKV 72 (343)
Q Consensus 39 ~~~~~I~V~~~Dr-~GLl~~i~~~L~~~glnI~~A 72 (343)
.+...|+|...+. +|.++++...|..+|+||.--
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i 303 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFI 303 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEE
Confidence 4455677766444 999999999999999999955
No 185
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.61 E-value=1.7 Score=35.31 Aligned_cols=51 Identities=6% Similarity=0.124 Sum_probs=37.6
Q ss_pred eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCC
Q 019269 176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADG 228 (343)
Q Consensus 176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g 228 (343)
.+.+.+..+|+||-|+++-..|+.+|+|+. +|.++...+. -.=.|+|+-+|
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt--~IESRP~~~~~~eY~FfIdieg 92 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIH--HLESRPSRKEGGDLEVLVRCEV 92 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEE--EEECCcCCCCCceEEEEEEEEe
Confidence 466777779999999999999999999999 6666544322 22247777444
No 186
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=90.58 E-value=21 Score=36.03 Aligned_cols=109 Identities=21% Similarity=0.211 Sum_probs=65.4
Q ss_pred CCeEEEEEEECC---cccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 019269 174 PGHTLVQIVCQD---HKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 174 ~~~t~i~V~~~D---rpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
.+.+.|+|.+.. .+|.+++|..+|+++|+|+.. |.+ ...+ ..-+|.+... ...+..+.|.+....
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~--I~q-~~~~-~~i~~~v~~~--------~~~~a~~~l~~~~~~ 372 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDL--ITQ-SISE-VSISFTVPES--------DAPRALRALLEEKLE 372 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEE--EEe-ccCC-CeEEEEEchh--------hHHHHHHHHHHHHhh
Confidence 456677777543 459999999999999999983 322 1111 1134555421 112222333333322
Q ss_pred Cc-ceeeecCCCCceeeeeeeEEEEeC---CCccHHHHHHHHHHhCCceEEEEEee
Q 019269 251 PL-RVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 251 ~~-~~~~~~~~~~~~v~~~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
.. .+.+ .+. + ..|.+.+. ..||+.+++..+|++.+|||.....+
T Consensus 373 ~~~~v~~-~~~----~---a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issS 420 (447)
T COG0527 373 LLAEVEV-EEG----L---ALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSS 420 (447)
T ss_pred hcceEEe-eCC----e---eEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcC
Confidence 21 1111 111 1 14566665 78999999999999999999988744
No 187
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.55 E-value=2.7 Score=31.85 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=36.8
Q ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 43 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 43 ~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
.+.|.-+|+||-|++++.+|. +.||.+..-.....+.+--.+.+...++ ++..+.+.+.|++
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc----HHHHHHHHHHHHH
Confidence 467888999999999999999 6666643332222233333333332211 3445666666655
No 188
>PRK09034 aspartate kinase; Reviewed
Probab=90.45 E-value=5.9 Score=39.95 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=78.2
Q ss_pred CeEEEEEEE---CCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269 175 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP 251 (343)
Q Consensus 175 ~~t~i~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~ 251 (343)
+.+.|++.+ .+++|+++++...|+++|+||... . +. . .--.|.+..+. +. ...+..+.+.|...+..
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~--ss-~-~sis~~v~~~~--~~-~a~~~~l~~el~~~~~~- 376 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P--SG-I-DDLSIIIRERQ--LT-PKKEDEILAEIKQELNP- 376 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c--CC-C-cEEEEEEeHHH--hh-HHHHHHHHHHHHHhhCC-
Confidence 456677764 678999999999999999999853 2 11 1 22236665211 11 10112333333322210
Q ss_pred cceeeecCCCCceeeeeeeEEEEeC---CCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCc
Q 019269 252 LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPR 328 (343)
Q Consensus 252 ~~~~~~~~~~~~~v~~~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~ 328 (343)
..+.. .+. + ..|.|.+. ++||++.++..+|.+.||+|....-. + .+ ..+ .|.|...+.
T Consensus 377 ~~I~~-~~~----v---a~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~--~-Se--~~I-s~vV~~~d~----- 437 (454)
T PRK09034 377 DELEI-EHD----L---AIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQG--S-SE--ISI-MFGVKNEDA----- 437 (454)
T ss_pred ceEEE-eCC----E---EEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec--C-Cc--ceE-EEEEcHHHH-----
Confidence 01100 011 1 25677654 89999999999999999999988654 3 22 232 255543321
Q ss_pred hHHHHHHHHHHcC
Q 019269 329 NKIEEGVWKLLMG 341 (343)
Q Consensus 329 ~~~~~~l~~~L~~ 341 (343)
.+....|.+++.+
T Consensus 438 ~~av~~LH~~f~~ 450 (454)
T PRK09034 438 EKAVKAIYNAFFK 450 (454)
T ss_pred HHHHHHHHHHHhc
Confidence 1234666666654
No 189
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=90.45 E-value=1.4 Score=41.43 Aligned_cols=53 Identities=17% Similarity=0.323 Sum_probs=41.9
Q ss_pred CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCCC
Q 019269 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGK 229 (343)
Q Consensus 175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g~ 229 (343)
..|.|-+..+|+||-|+++-++|+.+|+|.. +|.++..+.. ..-.|+++-+|.
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlT--kIESRP~k~~~~~Y~F~iD~eg~ 246 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLT--KIESRPLKTGLGEYLFFIDIEGH 246 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCccee--eEeecccCCCCeeEEEEEEEecC
Confidence 4788888999999999999999999999999 7776544433 334578885554
No 190
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.31 E-value=1.3 Score=32.03 Aligned_cols=59 Identities=15% Similarity=-0.029 Sum_probs=39.1
Q ss_pred EEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHc
Q 019269 272 ELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 340 (343)
Q Consensus 272 eV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~ 340 (343)
.|.-+||||-|.++.+.+++ |.||....=. -.+.....+ ++.....+ ++ ..++|.++|.
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~--~~~~~~~~v--~v~ie~~~----~~-~~~~i~~~L~ 60 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYR--NQGGDEARV--LVGIQVPD----RE-DLAELKERLE 60 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEE--cCCCCceEE--EEEEEeCC----HH-HHHHHHHHHH
Confidence 46779999999999999999 9999988777 333333334 44432222 12 3466666654
No 191
>PLN02551 aspartokinase
Probab=90.25 E-value=24 Score=36.29 Aligned_cols=111 Identities=14% Similarity=0.275 Sum_probs=66.7
Q ss_pred CCCEEEEEEEEc---CCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcc
Q 019269 38 PSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 114 (343)
Q Consensus 38 ~~~~~~I~V~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~ 114 (343)
..+.+.|+|.+. +.+|.++++...|..+|+||. -|.+.... -.|.+...+. + ..+.+++.+...+..
T Consensus 363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd--~IssSe~s---Is~~v~~~~~----~-~~~~i~~~l~~l~~e 432 (521)
T PLN02551 363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVD--VVATSEVS---ISLTLDPSKL----W-SRELIQQELDHLVEE 432 (521)
T ss_pred CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEE--EEeccCCE---EEEEEehhHh----h-hhhhHHHHHHHHHHH
Confidence 344567788664 689999999999999999998 44443222 2355543210 0 122233333332111
Q ss_pred cccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEEC--CcccHHHH
Q 019269 115 AMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ--DHKGLLYD 192 (343)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~--DrpGLl~~ 192 (343)
+ . + + ..|.+. .+...|.|.|. .++|++++
T Consensus 433 -------------l----------~----~-~-----------------~~V~v~----~~vAiISvVG~~~~~~gvaar 463 (521)
T PLN02551 433 -------------L----------E----K-I-----------------AVVNLL----QGRSIISLIGNVQRSSLILEK 463 (521)
T ss_pred -------------h----------h----c-C-----------------CeEEEe----CCEEEEEEEccCCCCccHHHH
Confidence 0 0 0 0 112222 24566777754 67999999
Q ss_pred HHHHHHhCCeeEEEE
Q 019269 193 IMRTLKDYNIQVSYG 207 (343)
Q Consensus 193 i~~~L~~~glnI~~A 207 (343)
+..+|++.|+||...
T Consensus 464 iF~aLa~~gInV~mI 478 (521)
T PLN02551 464 VFRVLRTNGVNVQMI 478 (521)
T ss_pred HHHHHHHCCCCeEEE
Confidence 999999999999843
No 192
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.02 E-value=0.79 Score=47.07 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=39.3
Q ss_pred CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 225 (343)
Q Consensus 175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~ 225 (343)
....+.+...|+||.+..|+.+|.++++||...++.....|+.++-++.++
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D 501 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD 501 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC
Confidence 445566677999999999999999999999988887434566676444443
No 193
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=89.91 E-value=4.9 Score=43.65 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=66.7
Q ss_pred CCeEEEEEEEC---CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 019269 174 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 174 ~~~t~i~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
.+.+.|+|.+. ++||+++++..+|+++|+||...... ..+ .--+|.+..+ ..++..+.|.+.+..
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqs---sSe-~sIsf~V~~~--------d~~~av~~L~~~f~~ 380 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQS---SSE-YSISFCVPQS--------DAAKAKRALEEEFAL 380 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcC---CCC-ceEEEEEeHH--------HHHHHHHHHHHHHHH
Confidence 45678888765 67999999999999999999844322 111 2223555421 122223333333221
Q ss_pred CcceeeecCCCCceeee---eeeEEEEeC---CCccHHHHHHHHHHhCCceEEEEE
Q 019269 251 PLRVTVVSRGPDTELLV---ANPVELSGK---GRPLVFHDITLALKMLDICIFSAE 300 (343)
Q Consensus 251 ~~~~~~~~~~~~~~v~~---~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~Ak 300 (343)
+... ... ..+.+ -..|.|.+. ++||++.++..+|.+.|++|....
T Consensus 381 el~~----~~~-~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 381 ELKE----GLL-EPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred Hhcc----CCc-ceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 1110 000 11111 125777776 799999999999999999998765
No 194
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=89.84 E-value=1.2 Score=38.39 Aligned_cols=66 Identities=8% Similarity=0.105 Sum_probs=45.9
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 249 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~ 249 (343)
-.+.+.-.|.||.|+++++.|++.|+||.+-.+.- |+... ..-++.+. | ++...+++.+.|.+.++
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~-tE~~~~SRiTivv~--g----~~~~~EQi~kQL~kLid 71 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGP-TETPGLSRITIVVS--G----DEQVLEQIIKQLNKLID 71 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEe-cCCCCceEEEEEEc--C----CcchHHHHHHHHHhhcc
Confidence 46788889999999999999999999999877753 33322 22222222 2 23456788888766554
No 195
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=89.32 E-value=1.3 Score=43.60 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=39.7
Q ss_pred eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCC
Q 019269 269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLS 325 (343)
Q Consensus 269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~ 325 (343)
+.+-+..+|+||.|+++-..|+.+|||+.+.... |+.+..-+ |.|||. -.|..
T Consensus 298 tsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSR-P~~~~~~~--Y~Ffid-~eg~~ 350 (386)
T PRK10622 298 TTLLMATGQQAGALVEALLVLRNHNLIMTKLESR-PIHGNPWE--EMFYLD-VQANL 350 (386)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEee-ecCCCCce--EEEEEE-EeCCC
Confidence 3455666899999999999999999999998766 55554444 448884 45643
No 196
>PRK09181 aspartate kinase; Validated
Probab=89.30 E-value=26 Score=35.63 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=64.1
Q ss_pred CEEEEEEEEc---CCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcccc
Q 019269 40 DVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAM 116 (343)
Q Consensus 40 ~~~~I~V~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~ 116 (343)
+.+.|+|.+. +.+|+.+++..+|..+|+||. -+.+..+. -.|.+... ..+++++...|...+..
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~s---is~~v~~~------~~~~~~~~~~L~~~~~~-- 394 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNANT---ITHYLWGS------LKTLKRVIAELEKRYPN-- 394 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCcE---EEEEEcCC------hHHHHHHHHHHHHhcCC--
Confidence 5667777543 688999999999999999998 44443222 23555431 11223333333321110
Q ss_pred cccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEECC--cccHHHHHH
Q 019269 117 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQD--HKGLLYDIM 194 (343)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~D--rpGLl~~i~ 194 (343)
..+. . .+...|.+.|.. +||+.+++.
T Consensus 395 -----------------------------------------------~~i~----~-~~~a~VsvVG~gm~~~gv~ak~f 422 (475)
T PRK09181 395 -----------------------------------------------AEVT----V-RKVAIVSAIGSNIAVPGVLAKAV 422 (475)
T ss_pred -----------------------------------------------ceEE----E-CCceEEEEeCCCCCcccHHHHHH
Confidence 0111 1 235677777654 899999999
Q ss_pred HHHHhCCeeEEE
Q 019269 195 RTLKDYNIQVSY 206 (343)
Q Consensus 195 ~~L~~~glnI~~ 206 (343)
.+|++.|+||..
T Consensus 423 ~aL~~~~Ini~~ 434 (475)
T PRK09181 423 QALAEAGINVLA 434 (475)
T ss_pred HHHHHCCCCeEE
Confidence 999999999983
No 197
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=89.24 E-value=0.47 Score=34.28 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=28.4
Q ss_pred CeEEEEEEEC----CcccHHHHHHHHHHhCCeeEEEEE
Q 019269 175 GHTLVQIVCQ----DHKGLLYDIMRTLKDYNIQVSYGR 208 (343)
Q Consensus 175 ~~t~i~V~~~----DrpGLl~~i~~~L~~~glnI~~A~ 208 (343)
+...|+|.++ |.||+++++++.|++.|+||....
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 4567888887 799999999999999999998443
No 198
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=89.23 E-value=0.71 Score=47.41 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=39.8
Q ss_pred CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 225 (343)
Q Consensus 175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~ 225 (343)
....+-+.-.|+||.+..|+.+|.++++||...++.....|+.++-++.++
T Consensus 450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D 500 (525)
T TIGR01327 450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD 500 (525)
T ss_pred CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC
Confidence 344555666999999999999999999999988887555667777555544
No 199
>PRK06545 prephenate dehydrogenase; Validated
Probab=89.11 E-value=1.3 Score=43.06 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=34.7
Q ss_pred CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEE
Q 019269 174 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 210 (343)
Q Consensus 174 ~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~ 210 (343)
..++.|.|.-+|+||-+++++..|.+.|+||.+.+|.
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~ 324 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRIL 324 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceee
Confidence 4678999999999999999999999999999999996
No 200
>PRK09084 aspartate kinase III; Validated
Probab=89.09 E-value=11 Score=38.03 Aligned_cols=104 Identities=23% Similarity=0.260 Sum_probs=60.5
Q ss_pred CCeEEEEEEEC---CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 019269 174 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 174 ~~~t~i~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
.+...|+|.+. +.+|+++++..+|+++|+||... .+ .. .--+|.+..+.. . ......+.+++.+.+..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I--~s-se---~sIs~~i~~~~~--~-~~~~~~~~~~l~~el~~ 374 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLI--TT-SE---VSVSLTLDTTGS--T-STGDTLLTQALLTELSQ 374 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEE--ec-cC---cEEEEEEechhh--h-hhhhHHHHHHHHHHHhc
Confidence 35567888765 68899999999999999999944 32 11 122355542211 0 10111232333333432
Q ss_pred CcceeeecCCCCceeeeeeeEEEEeC---CCccHHHHHHHHHHhCCc
Q 019269 251 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDI 294 (343)
Q Consensus 251 ~~~~~~~~~~~~~~v~~~~~ieV~~~---DrpGLL~~I~~~l~~~gi 294 (343)
...+.+ ... + ..|.|.|. ++||+..++..+|.+.++
T Consensus 375 ~~~i~~-~~~----v---a~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 375 LCRVEV-EEG----L---ALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred CCeEEE-ECC----e---EEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 111111 011 1 26778876 799999999999987543
No 201
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=88.88 E-value=2.3 Score=36.59 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=48.1
Q ss_pred EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC-CEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269 41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 112 (343)
Q Consensus 41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l 112 (343)
.-.+.+.-.|.||.++++++.|+..|+||.+--+--+.+ +..--++.+.. ++..++++.+.|....
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g------~~~~~EQi~kQL~kLi 70 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG------DEQVLEQIIKQLNKLI 70 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC------CcchHHHHHHHHHhhc
Confidence 346888899999999999999999999999877765543 33333333332 3455778888887754
No 202
>PRK09181 aspartate kinase; Validated
Probab=88.76 E-value=11 Score=38.39 Aligned_cols=106 Identities=14% Similarity=0.102 Sum_probs=67.0
Q ss_pred CeEEEEEEEC---CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 019269 175 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP 251 (343)
Q Consensus 175 ~~t~i~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~ 251 (343)
+.+.|+|.+. +.+|+.+++..+|+++|+||. .+.+ . . ..-.|.+..+ ....+++.+.|.+.+...
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~s--s-~-~sis~~v~~~------~~~~~~~~~~L~~~~~~~ 395 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKAT--N-A-NTITHYLWGS------LKTLKRVIAELEKRYPNA 395 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEe--c-C-cEEEEEEcCC------hHHHHHHHHHHHHhcCCc
Confidence 5667777654 689999999999999999998 3432 1 1 1223455421 113344545554433211
Q ss_pred cceeeecCCCCceeeeeeeEEEEeCC--CccHHHHHHHHHHhCCceEEEEEee
Q 019269 252 LRVTVVSRGPDTELLVANPVELSGKG--RPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 252 ~~~~~~~~~~~~~v~~~~~ieV~~~D--rpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
.+. ..+ + ..|.|.|.. +||+..++..+|.+.||||.....+
T Consensus 396 -~i~--~~~----~---a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg 438 (475)
T PRK09181 396 -EVT--VRK----V---AIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS 438 (475)
T ss_pred -eEE--ECC----c---eEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence 111 111 1 256777654 8999999999999999999775544
No 203
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=88.54 E-value=16 Score=36.54 Aligned_cols=105 Identities=21% Similarity=0.158 Sum_probs=62.0
Q ss_pred CeEEEEEEECCc--ccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCc
Q 019269 175 GHTLVQIVCQDH--KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL 252 (343)
Q Consensus 175 ~~t~i~V~~~Dr--pGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~ 252 (343)
+...|+|.+.+- +|+++++.++|+++|+||....-. +. +.- -.|.+..+ ..++..+.|..... ..
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~--~s-e~s-Is~~I~~~--------~~~~a~~~L~~~~~-~~ 367 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQS--SS-ETS-ISFTVDKE--------DADQAKTLLKSELN-LS 367 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec--CC-Cce-EEEEEEHH--------HHHHHHHHHHHHHH-hc
Confidence 455677766443 799999999999999999854321 11 111 12444421 11222222222111 10
Q ss_pred ceeeecCCCCceeee---eeeEEEEeC---CCccHHHHHHHHHHhCCceEEEEE
Q 019269 253 RVTVVSRGPDTELLV---ANPVELSGK---GRPLVFHDITLALKMLDICIFSAE 300 (343)
Q Consensus 253 ~~~~~~~~~~~~v~~---~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~Ak 300 (343)
.. ..+.+ -..+.|.+. ++||++++|..+|++.|+||....
T Consensus 368 ~~--------~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 368 AL--------SSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred Cc--------ceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 11 11111 125677654 889999999999999999998775
No 204
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=88.35 E-value=2.9 Score=41.28 Aligned_cols=53 Identities=13% Similarity=0.287 Sum_probs=40.6
Q ss_pred CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCCC
Q 019269 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGK 229 (343)
Q Consensus 175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g~ 229 (343)
..|.+-+..+|+||.|+++-+.|+.+|+|+. +|.++...+. ..=.|+++-+|.
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLt--kIeSRP~~~~~~~Y~Ffid~eg~ 349 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMT--KLESRPIHGNPWEEMFYLDVQAN 349 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCee--EEEeeecCCCCceEEEEEEEeCC
Confidence 3677777779999999999999999999999 6766544333 444588886554
No 205
>PRK06349 homoserine dehydrogenase; Provisional
Probab=88.25 E-value=2.2 Score=42.60 Aligned_cols=50 Identities=20% Similarity=0.125 Sum_probs=39.4
Q ss_pred eeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcC
Q 019269 268 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 321 (343)
Q Consensus 268 ~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~ 321 (343)
.+.+.+...|+||.|.+|+..|.+++++|.+..-. ...+...++ +++++.
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~--~~~~~~~~i--vivT~~ 397 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQK--GAGGEGAEI--VIVTHE 397 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEec--cCCCCceeE--EEEEEe
Confidence 45789999999999999999999999999988665 333344455 677754
No 206
>PRK06382 threonine dehydratase; Provisional
Probab=88.06 E-value=3.5 Score=40.84 Aligned_cols=67 Identities=10% Similarity=0.112 Sum_probs=44.5
Q ss_pred CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEE---eecCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 019269 174 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR---RQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 245 (343)
Q Consensus 174 ~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t---~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~ 245 (343)
...+.+.|.-+|+||-|.+++.+|.++|+||.+..... ....+...-+|.+... +++..+.|.+.|+
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~ 397 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALR 397 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHH
Confidence 45678999999999999999999999999998655421 0112344444555421 1334446666654
No 207
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=87.93 E-value=0.97 Score=46.42 Aligned_cols=61 Identities=23% Similarity=0.257 Sum_probs=45.8
Q ss_pred eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHH
Q 019269 270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 337 (343)
Q Consensus 270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~ 337 (343)
.+-+.-.|+||.+..|+..|.+++|||...++.+...|+.+ +++...+ ++++++ ..++|++
T Consensus 453 ~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~a-----l~~i~~D-~~v~~~-~l~~i~~ 513 (525)
T TIGR01327 453 MLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEA-----LMLLSLD-QPVPDE-VLEEIKA 513 (525)
T ss_pred EEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeE-----EEEEEcC-CCCCHH-HHHHHhc
Confidence 34455689999999999999999999999999976667665 4444443 355655 5677764
No 208
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=87.81 E-value=1.3 Score=45.50 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=44.5
Q ss_pred eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHH
Q 019269 270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 337 (343)
Q Consensus 270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~ 337 (343)
.+-+.-.|+||.+..|+..|.+++|||...++.+...|+.+ .++..-+ ++++++ ..++|++
T Consensus 454 ~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~a-----l~~i~~D-~~v~~~-~l~~i~~ 514 (526)
T PRK13581 454 MLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEA-----LMVLSVD-DPVPEE-VLEELRA 514 (526)
T ss_pred EEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeE-----EEEEECC-CCCCHH-HHHHHhc
Confidence 34555689999999999999999999999999854455555 4444443 455555 5677764
No 209
>PRK08198 threonine dehydratase; Provisional
Probab=87.23 E-value=6 Score=39.09 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=41.7
Q ss_pred hhcCCCCCCCCcccC---C--CCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEE
Q 019269 20 EEETDGCMPFLFFSF---S--PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS 75 (343)
Q Consensus 20 ~~~~~~~~~~~~~~~---~--~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~ 75 (343)
.-+|-+++.+..... + ...+....+.|.-+|+||.|++++..+..+|.||.+-...
T Consensus 301 ~vl~ggn~~~~~l~~ii~~gl~~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 301 AVLSGGNIDVLLLSRVIERGLVAAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred EEECCCCCCHHHHHHHHHhhhhhcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 345655655443322 1 3456667999999999999999999999999999977654
No 210
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.23 E-value=6 Score=29.95 Aligned_cols=62 Identities=6% Similarity=0.014 Sum_probs=36.4
Q ss_pred EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269 178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 246 (343)
Q Consensus 178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~ 246 (343)
++.|.-+|+||=|.+++.+|+ +.||.+..-.. ...+.+.-.+.+...+. ++..+.+.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~-~~~~~~~v~i~ie~~~~----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRY-ADEKDAHIFVGVSVANG----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEc-cCCCeeEEEEEEEeCCc----HHHHHHHHHHHHH
Confidence 577888999999999999999 55665333321 11123333344442210 3455666666643
No 211
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=86.33 E-value=6.5 Score=38.49 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=53.5
Q ss_pred hhhcCCCCCCCCccc---C--CCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEe---c-CCCEEEEEEEEe
Q 019269 19 IEEETDGCMPFLFFS---F--SPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST---T-PDGKVMDLFFVT 89 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~---~--~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T---~-~~g~~~d~f~V~ 89 (343)
+.-+|-+++++..+. + -...+....+.|.-+|+||.|++++..++.+|.||.+-.-.. . +.+.+.-.+.+.
T Consensus 278 v~i~sGGn~d~d~l~~vi~~gl~~~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~ve 357 (380)
T TIGR01127 278 AVVLSGGNIDLNLLNKIIEKGLVKSGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLE 357 (380)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEE
Confidence 344566665533221 1 233445558999999999999999999999999999664331 1 235554445554
Q ss_pred cCCCcccchhHHHHHHHHHHH
Q 019269 90 DTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 90 ~~~g~~~~~~~~~~l~~~L~~ 110 (343)
.. +++..+.|.+.|++
T Consensus 358 t~-----~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 358 TR-----GKEHLDEILKILRD 373 (380)
T ss_pred eC-----CHHHHHHHHHHHHH
Confidence 32 23444555555544
No 212
>PRK08818 prephenate dehydrogenase; Provisional
Probab=86.31 E-value=1.5 Score=42.95 Aligned_cols=48 Identities=6% Similarity=-0.035 Sum_probs=35.5
Q ss_pred eeEEEEeC-CCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcC
Q 019269 269 NPVELSGK-GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 321 (343)
Q Consensus 269 ~~ieV~~~-DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~ 321 (343)
+.+-+.-+ |+||.|++|...|+++||||.+..+. .... ..|.|||.=.
T Consensus 296 ~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~---~~r~--~~y~f~i~~~ 344 (370)
T PRK08818 296 LTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSS---RTPA--GELHFRIGFE 344 (370)
T ss_pred eEEEEECCCCCCChHHHHHHHHHHcCcccceEEEe---cccC--ceEEEEEEEe
Confidence 45555665 99999999999999999999999985 1111 2244887533
No 213
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=86.03 E-value=6.1 Score=38.64 Aligned_cols=66 Identities=9% Similarity=0.169 Sum_probs=42.9
Q ss_pred CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEE---EeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 019269 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS---RRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 245 (343)
Q Consensus 175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~---t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~ 245 (343)
....+.|.-+||||.|+++++.+++.|.||.+..-. .....+.+.-.+.+... +++..+.|.+.|.
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-----~~~~~~~i~~~L~ 372 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-----GKEHLDEILKILR 372 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-----CHHHHHHHHHHHH
Confidence 345889999999999999999999999999865432 10112344433444421 2335556666654
No 214
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=86.01 E-value=57 Score=35.57 Aligned_cols=113 Identities=13% Similarity=0.168 Sum_probs=69.3
Q ss_pred CCCEEEEEEEEc---CCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcc
Q 019269 38 PSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 114 (343)
Q Consensus 38 ~~~~~~I~V~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~ 114 (343)
..+...|+|.+. +++|+++++..+|..+|+||.-....+ +..- -.|.|.. .+.++..+.|.+.+..
T Consensus 312 ~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss--Se~s-Isf~V~~--------~d~~~av~~L~~~f~~ 380 (819)
T PRK09436 312 LNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS--SEYS-ISFCVPQ--------SDAAKAKRALEEEFAL 380 (819)
T ss_pred eCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC--CCce-EEEEEeH--------HHHHHHHHHHHHHHHH
Confidence 355667888864 678999999999999999997333222 2222 1344432 2233333334433311
Q ss_pred cccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEEC---CcccHHH
Q 019269 115 AMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLY 191 (343)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~~---DrpGLl~ 191 (343)
+. ..+ ....|.+. .+...|.|.+. ++||+.+
T Consensus 381 el----------------------~~~--------------------~~~~i~~~----~~valIsvvG~gm~~~~gv~a 414 (819)
T PRK09436 381 EL----------------------KEG--------------------LLEPLEVE----ENLAIISVVGDGMRTHPGIAA 414 (819)
T ss_pred Hh----------------------ccC--------------------CcceEEEe----CCEEEEEEEccCcccCcCHHH
Confidence 10 000 00122222 34567888875 7899999
Q ss_pred HHHHHHHhCCeeEEEE
Q 019269 192 DIMRTLKDYNIQVSYG 207 (343)
Q Consensus 192 ~i~~~L~~~glnI~~A 207 (343)
++..+|.+.|+||...
T Consensus 415 rif~aL~~~~InI~~I 430 (819)
T PRK09436 415 KFFSALGRANINIVAI 430 (819)
T ss_pred HHHHHHHHCCCCEEEE
Confidence 9999999999999843
No 215
>PRK09034 aspartate kinase; Reviewed
Probab=84.80 E-value=47 Score=33.50 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=27.4
Q ss_pred CeEEEEEEE---CCcccHHHHHHHHHHhCCeeEEEE
Q 019269 175 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYG 207 (343)
Q Consensus 175 ~~t~i~V~~---~DrpGLl~~i~~~L~~~glnI~~A 207 (343)
+...|.+.+ .++||+++++..+|++.|+||...
T Consensus 384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mI 419 (454)
T PRK09034 384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMI 419 (454)
T ss_pred CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 356777765 478999999999999999999844
No 216
>PRK08818 prephenate dehydrogenase; Provisional
Probab=84.54 E-value=2.2 Score=41.80 Aligned_cols=48 Identities=15% Similarity=0.154 Sum_probs=35.9
Q ss_pred CeEEEEEEEC-CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269 175 GHTLVQIVCQ-DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 225 (343)
Q Consensus 175 ~~t~i~V~~~-DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~ 225 (343)
..+.+.+.-+ |+||-|+++..+|+.+|+||.+-.+.. +..+... |++.
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~-~r~~~y~--f~i~ 342 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSR-TPAGELH--FRIG 342 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEec-ccCceEE--EEEE
Confidence 3567777776 999999999999999999999777732 2212222 7776
No 217
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=84.43 E-value=1.6 Score=40.09 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=32.7
Q ss_pred CEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEec
Q 019269 40 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT 77 (343)
Q Consensus 40 ~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~ 77 (343)
..-.|.+..-|.||.+++|+|+|+..|+||.+--+--+
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~t 113 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLT 113 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeech
Confidence 34578899999999999999999999999998776543
No 218
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=83.98 E-value=8.7 Score=44.31 Aligned_cols=99 Identities=13% Similarity=0.029 Sum_probs=71.5
Q ss_pred ccchhhcCCCCCC-CCcccCCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC--C--EEEEEEEEec
Q 019269 16 VGFIEEETDGCMP-FLFFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD--G--KVMDLFFVTD 90 (343)
Q Consensus 16 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~--g--~~~d~f~V~~ 90 (343)
..+||.+++.+-. .....+....++.+.+.++.+.++..|+++.-+|..+|+.|++.+-+.... | ..+.-|.+..
T Consensus 463 i~~le~l~~~~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~ 542 (1528)
T PF05088_consen 463 IERLESLSGEGPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQY 542 (1528)
T ss_pred HHHHHhhcCCCCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEec
Confidence 3577888775444 334444556668899999999999999999999999999999998776542 2 4556688888
Q ss_pred CCCcccc-hhHHHHHHHHHHHHhcc
Q 019269 91 TRELLHT-RKRKEDTYEHLKTILGN 114 (343)
Q Consensus 91 ~~g~~~~-~~~~~~l~~~L~~~l~~ 114 (343)
+.+...+ ...++.+++.+..+..+
T Consensus 543 ~~~~~~~~~~~~~~~~~a~~~v~~g 567 (1528)
T PF05088_consen 543 PDGDALDLDDIRERFEEAFEAVWNG 567 (1528)
T ss_pred CCCccccHHHHHHHHHHHHHHHhcC
Confidence 7665332 34556677777666544
No 219
>PRK08198 threonine dehydratase; Provisional
Probab=83.95 E-value=10 Score=37.49 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=32.5
Q ss_pred CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEE
Q 019269 174 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 210 (343)
Q Consensus 174 ~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~ 210 (343)
.....+.|.-+|+||-|.++...+++.|.||.+....
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 4556899999999999999999999999999976653
No 220
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.71 E-value=14 Score=27.25 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=36.9
Q ss_pred cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 49 YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 49 ~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
++.+|+++++.++|+.+|+||. -|.+..+. -.|.|...... .+.+.++.|.+.|++
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vD--mI~~s~~~---isftv~~~~~~-~~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVD--LVSTSETN---VTVSLDPDPNG-LDPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEE--EEEeCCCE---EEEEEeCcccc-cchHHHHHHHHHHHh
Confidence 6789999999999999999998 55553222 23556543211 223456677777666
No 221
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.53 E-value=5.7 Score=26.85 Aligned_cols=46 Identities=17% Similarity=0.280 Sum_probs=30.6
Q ss_pred EEEE-EcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEe
Q 019269 44 LKLS-CYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 89 (343)
Q Consensus 44 I~V~-~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~ 89 (343)
|++. .+|.+|.++++...|..+|++|.........+|..--.|.+.
T Consensus 3 v~v~~~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 3 VTIKGVPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred EEEecCCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 4444 388899999999999999999975444322233222335553
No 222
>PRK09084 aspartate kinase III; Validated
Probab=83.49 E-value=39 Score=33.98 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=27.0
Q ss_pred CCEEEEEEEEc---CCCcHHHHHHHHHHhCCCeEE
Q 019269 39 SDVFLLKLSCY---DRKGLLYDVTAVLCELELTIE 70 (343)
Q Consensus 39 ~~~~~I~V~~~---Dr~GLl~~i~~~L~~~glnI~ 70 (343)
.+...|+|.+. +.+|.++++..+|..+|+||.
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd 338 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVD 338 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEE
Confidence 45567778654 688999999999999999998
No 223
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=82.33 E-value=4.3 Score=34.80 Aligned_cols=31 Identities=13% Similarity=0.166 Sum_probs=25.5
Q ss_pred EEEEEE--CCcccHHHHHHHHHHhCCeeEEEEE
Q 019269 178 LVQIVC--QDHKGLLYDIMRTLKDYNIQVSYGR 208 (343)
Q Consensus 178 ~i~V~~--~DrpGLl~~i~~~L~~~glnI~~A~ 208 (343)
+|+++. .+.||+++.+++.++++||+|..+-
T Consensus 95 Viei~~~~~~~pgi~A~V~~~iak~gi~Irqi~ 127 (167)
T COG2150 95 VIEIYPEDARYPGILAGVASLIAKRGISIRQII 127 (167)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHcCceEEEEe
Confidence 555554 6679999999999999999999543
No 224
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=82.30 E-value=14 Score=26.09 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=24.7
Q ss_pred EEEEEE-cCCCcHHHHHHHHHHhCCCeEEEE
Q 019269 43 LLKLSC-YDRKGLLYDVTAVLCELELTIEKV 72 (343)
Q Consensus 43 ~I~V~~-~Dr~GLl~~i~~~L~~~glnI~~A 72 (343)
.|+|.+ +|.+|.++++...|...|+||..-
T Consensus 3 ~v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i 33 (75)
T cd04913 3 KITLRGVPDKPGVAAKIFGALAEANINVDMI 33 (75)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHcCCeEEEE
Confidence 344443 789999999999999999999843
No 225
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.08 E-value=13 Score=27.50 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=22.1
Q ss_pred ECCcccHHHHHHHHHHhCCeeEEE
Q 019269 183 CQDHKGLLYDIMRTLKDYNIQVSY 206 (343)
Q Consensus 183 ~~DrpGLl~~i~~~L~~~glnI~~ 206 (343)
.+++||++++|..+|+++|+||-.
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDm 34 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDL 34 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEE
Confidence 478899999999999999999993
No 226
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.87 E-value=12 Score=27.79 Aligned_cols=32 Identities=13% Similarity=-0.081 Sum_probs=26.6
Q ss_pred eEEEE---eCCCccHHHHHHHHHHhCCceEEEEEe
Q 019269 270 PVELS---GKGRPLVFHDITLALKMLDICIFSAEI 301 (343)
Q Consensus 270 ~ieV~---~~DrpGLL~~I~~~l~~~gi~I~~AkI 301 (343)
.|+|. ..++||++++|-.+|+++||+|.....
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~ 37 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT 37 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee
Confidence 45553 468999999999999999999998753
No 227
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=81.82 E-value=2.6 Score=36.15 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=31.0
Q ss_pred CCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEe
Q 019269 35 SPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST 76 (343)
Q Consensus 35 ~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T 76 (343)
+...-+...|...-.+.||+++.+++.++++||+|. +++.
T Consensus 89 ~~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Ir--qi~~ 128 (167)
T COG2150 89 PLLGLGVIEIYPEDARYPGILAGVASLIAKRGISIR--QIIS 128 (167)
T ss_pred HhcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEE--EEec
Confidence 344445556666668899999999999999999999 4554
No 228
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=81.77 E-value=59 Score=32.47 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=27.5
Q ss_pred CeEEEEEEE---CCcccHHHHHHHHHHhCCeeEEEE
Q 019269 175 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYG 207 (343)
Q Consensus 175 ~~t~i~V~~---~DrpGLl~~i~~~L~~~glnI~~A 207 (343)
+...|++.+ .++||+++++...|++.|+||...
T Consensus 377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i 412 (441)
T TIGR00657 377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMI 412 (441)
T ss_pred CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEE
Confidence 456777765 478999999999999999999844
No 229
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=81.01 E-value=11 Score=31.43 Aligned_cols=51 Identities=12% Similarity=0.082 Sum_probs=40.0
Q ss_pred CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe
Q 019269 174 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 225 (343)
Q Consensus 174 ~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~ 225 (343)
..-+.+.+.-.||.|.|+++-.++++.++||....-.. ...|++--+..++
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~Anvtlsi~ 120 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGRANVTLSID 120 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEeccc-ccCceeeEEEEEE
Confidence 34578889999999999999999999999999555433 4456776566665
No 230
>PRK06545 prephenate dehydrogenase; Validated
Probab=80.96 E-value=2.6 Score=41.05 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=36.4
Q ss_pred CCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecC
Q 019269 38 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP 78 (343)
Q Consensus 38 ~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~ 78 (343)
-...+.|.|.-+|+||-+++++..|...|+||.+-+|....
T Consensus 287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~ 327 (359)
T PRK06545 287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAR 327 (359)
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeecc
Confidence 35678999999999999999999999999999999986543
No 231
>PLN02317 arogenate dehydratase
Probab=80.62 E-value=11 Score=37.10 Aligned_cols=37 Identities=14% Similarity=0.349 Sum_probs=31.5
Q ss_pred eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeec
Q 019269 176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR 214 (343)
Q Consensus 176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~ 214 (343)
.|.|.+.-+|+||-|+++-.+|+.+|+|+. +|.++..
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLt--kIESRP~ 319 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLT--KIESRPQ 319 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEE--EEEeeec
Confidence 477777779999999999999999999999 6666543
No 232
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=80.60 E-value=15 Score=26.87 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=23.7
Q ss_pred EEEEE---ECCcccHHHHHHHHHHhCCeeEEE
Q 019269 178 LVQIV---CQDHKGLLYDIMRTLKDYNIQVSY 206 (343)
Q Consensus 178 ~i~V~---~~DrpGLl~~i~~~L~~~glnI~~ 206 (343)
.|++. ..+.+|+++++..+|++.|+++..
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~ 34 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDL 34 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEE
Confidence 44553 267799999999999999999973
No 233
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=80.25 E-value=13 Score=25.88 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=35.6
Q ss_pred CCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHH
Q 019269 276 KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLL 339 (343)
Q Consensus 276 ~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L 339 (343)
.++||+.++|-++|.++|+++.....+ + +...|++...+. + + ..++|.++|
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~t~-----~---~~is~~v~~~~~---~-~-~~~~l~~~l 61 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIPTS-----E---NSVTLYLDDSLL---P-K-KLKRLLAEL 61 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEecC-----C---CEEEEEEehhhh---h-H-HHHHHHHhh
Confidence 378999999999999999999998433 2 333588865332 1 2 346666665
No 234
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=78.89 E-value=2.1 Score=39.30 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=31.6
Q ss_pred CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEE
Q 019269 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 210 (343)
Q Consensus 175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~ 210 (343)
..-+|.+...|-||++.+|+++|+..|.||.+.-+-
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc 111 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVC 111 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeee
Confidence 345888999999999999999999999999976653
No 235
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.69 E-value=17 Score=26.91 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=35.1
Q ss_pred CCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269 184 QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 246 (343)
Q Consensus 184 ~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~ 246 (343)
++.||+++++.++|+++|+||. .|. + +. .--.|.+......+.+ +..+.|.++|.+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vD--mI~--~-s~-~~isftv~~~~~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVD--LVS--T-SE-TNVTVSLDPDPNGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEE--EEE--e-CC-CEEEEEEeCcccccch-HHHHHHHHHHHh
Confidence 6789999999999999999999 443 2 22 1222555432211232 356667777654
No 236
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=78.24 E-value=22 Score=26.02 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=38.2
Q ss_pred EEEEEEE---cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 42 FLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 42 ~~I~V~~---~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
+.|++.+ .+.+|+.+++..+|+.+|+++. -+.+..+. -.|.+.... ...+...+..|.+.|++
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~--~i~~s~~~---is~~v~~~~-~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVD--LISTSEVS---VSLTLDPTK-NLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEE--EEEcCCcE---EEEEEEchh-hccchHHHHHHHHHHHh
Confidence 4567753 6779999999999999999996 33342222 235554321 11112355566666655
No 237
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=77.84 E-value=5.1 Score=40.24 Aligned_cols=53 Identities=15% Similarity=0.009 Sum_probs=38.5
Q ss_pred eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCC
Q 019269 270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLS 325 (343)
Q Consensus 270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~ 325 (343)
.|-+...|+||-|+++-.+|+++|||+.+.... ....+..+.|.|||. -+|..
T Consensus 33 SLIFsL~d~pGaL~~vL~vFa~~gINLThIESR--Psk~~~~e~Y~FfVD-~Eg~~ 85 (464)
T TIGR01270 33 SIIFSLSNVVGDLSKAIAIFQDRHINILHLESR--DSKDGTSKTMDVLVD-VELFH 85 (464)
T ss_pred EEEEECCCCchHHHHHHHHHHHCCCCEEEEECC--cCCCCCCccEEEEEE-EEcCH
Confidence 455556899999999999999999999999877 333333442458885 33443
No 238
>PRK11898 prephenate dehydratase; Provisional
Probab=77.46 E-value=8.4 Score=36.32 Aligned_cols=52 Identities=13% Similarity=0.033 Sum_probs=36.8
Q ss_pred eEEEEeC-CCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCC
Q 019269 270 PVELSGK-GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLS 325 (343)
Q Consensus 270 ~ieV~~~-DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~ 325 (343)
.+-+.-. |+||-|+++-..|+++|||+.+.... |..+..-+ |.|||. -+|..
T Consensus 198 slif~l~~~~pGsL~~~L~~F~~~~INLt~IeSR-P~~~~~~~--y~F~vd-~eg~~ 250 (283)
T PRK11898 198 SLVLTLPNNLPGALYKALSEFAWRGINLTRIESR-PTKTGLGT--YFFFID-VEGHI 250 (283)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecc-cCCCCCcc--EEEEEE-EEccC
Confidence 3444444 56999999999999999999998876 33333322 458884 45653
No 239
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=77.22 E-value=9.1 Score=38.49 Aligned_cols=55 Identities=9% Similarity=0.071 Sum_probs=40.2
Q ss_pred CCCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEE--EEEEEecCC
Q 019269 172 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEI--DLFIMQADG 228 (343)
Q Consensus 172 ~~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~--d~F~v~~~g 228 (343)
.....+.|-+..+|+||-|+++-++|+.+|+|+. +|.++....... =.|+|+-++
T Consensus 27 ~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLT--hIESRPsk~~~~e~Y~FfVD~Eg 83 (464)
T TIGR01270 27 EGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINIL--HLESRDSKDGTSKTMDVLVDVEL 83 (464)
T ss_pred CCCceEEEEEECCCCchHHHHHHHHHHHCCCCEE--EEECCcCCCCCCccEEEEEEEEc
Confidence 3445677777789999999999999999999999 676654332322 247787444
No 240
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=77.02 E-value=5.5 Score=40.89 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=31.8
Q ss_pred eEEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269 270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
.++|.|.||.|+..+|...|...+|++....|.
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~ 34 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEID 34 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEc
Confidence 479999999999999999999999999999998
No 241
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=76.77 E-value=52 Score=35.80 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=63.9
Q ss_pred CCeEEEEEEEC---CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 019269 174 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 174 ~~~t~i~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
.+.+.|+|.+. +.+|.++++..+|+++|+||..... +..+. .-.|.+..+ ..+.+.+.|.+. ..
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~---~~s~~-sis~~i~~~--------~~~~~~~~l~~~-~~ 381 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGV---HPDRQ-LLQLAYTSE--------VADSALKLLDDA-AL 381 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEe---cCCCc-EEEEEEeHH--------HHHHHHHHHHhh-cC
Confidence 35567777765 7789999999999999999984432 22222 112343311 223333333321 11
Q ss_pred CcceeeecCCCCceeeeeeeEEEEeC---CCccHHHHHHHHHHhCCceEEEEE
Q 019269 251 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAE 300 (343)
Q Consensus 251 ~~~~~~~~~~~~~~v~~~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~Ak 300 (343)
...+.+ .+ .+ ..|.|.+. .+||+..++..+|.+.+|++.+-.
T Consensus 382 ~~~i~v-~~----~~---a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~ 426 (810)
T PRK09466 382 PGELKL-RE----GL---ALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQS 426 (810)
T ss_pred CCcEEE-eC----Ce---EEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEEe
Confidence 111110 01 11 26778775 689999999999999999985543
No 242
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=76.63 E-value=22 Score=24.62 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=24.9
Q ss_pred EEEEEE---CCcccHHHHHHHHHHhCCeeEEEE
Q 019269 178 LVQIVC---QDHKGLLYDIMRTLKDYNIQVSYG 207 (343)
Q Consensus 178 ~i~V~~---~DrpGLl~~i~~~L~~~glnI~~A 207 (343)
.|.+.| ++.||+++++.++|++.|++|...
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i 35 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAI 35 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 455655 578999999999999999999844
No 243
>PRK14646 hypothetical protein; Provisional
Probab=76.01 E-value=43 Score=28.62 Aligned_cols=91 Identities=11% Similarity=0.086 Sum_probs=55.8
Q ss_pred cHHHHHHHHHHhCCeeEEEEEEEEeecCC-EEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCcee
Q 019269 188 GLLYDIMRTLKDYNIQVSYGRFSRRQRGN-CEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTEL 265 (343)
Q Consensus 188 GLl~~i~~~L~~~glnI~~A~i~t~t~g~-~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~v 265 (343)
-+...+..++..+|+.+.+.... ..|+ .++ ..+++ ++|..++ -+..+.+.+.+.+.|+.... +
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~--~~~~~~~L-rV~IDk~~g~gVt-ldDC~~vSr~is~~LD~~D~-----------i 72 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQ--TNQNPIVI-KIIIKKTNGDDIS-LDDCALFNTPASEEIENSNL-----------L 72 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEE--eCCCCeEE-EEEEECCCCCCcc-HHHHHHHHHHHHHHhCcCCC-----------C
Confidence 46677888999999999999987 4444 444 34555 4443444 45778888888887764211 1
Q ss_pred eeeeeEEEEeC--CCccHHHHHHHHHHhCCce
Q 019269 266 LVANPVELSGK--GRPLVFHDITLALKMLDIC 295 (343)
Q Consensus 266 ~~~~~ieV~~~--DrpGLL~~I~~~l~~~gi~ 295 (343)
.-.+.+||+++ ||| |..-...-+-.|-.
T Consensus 73 ~~~Y~LEVSSPGldRp--L~~~~df~r~~G~~ 102 (155)
T PRK14646 73 NCSYVLEISSQGVSDE--LTSERDFKTFKGFP 102 (155)
T ss_pred CCCeEEEEcCCCCCCc--CCCHHHHHHhCCCE
Confidence 11346777776 554 44444444444443
No 244
>PRK11898 prephenate dehydratase; Provisional
Probab=75.63 E-value=19 Score=33.99 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=37.4
Q ss_pred CeEEEEEEECC-cccHHHHHHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCCC
Q 019269 175 GHTLVQIVCQD-HKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGK 229 (343)
Q Consensus 175 ~~t~i~V~~~D-rpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g~ 229 (343)
..+.|.+..++ +||-|+++-.+|+++|+|+. +|.++...+. ..=.|+++-+|.
T Consensus 195 ~ktslif~l~~~~pGsL~~~L~~F~~~~INLt--~IeSRP~~~~~~~y~F~vd~eg~ 249 (283)
T PRK11898 195 DKTSLVLTLPNNLPGALYKALSEFAWRGINLT--RIESRPTKTGLGTYFFFIDVEGH 249 (283)
T ss_pred CeEEEEEEeCCCCccHHHHHHHHHHHCCCCee--eEecccCCCCCccEEEEEEEEcc
Confidence 35666666655 69999999999999999999 6666543222 233478875554
No 245
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=75.48 E-value=25 Score=24.71 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=25.5
Q ss_pred EEEEEEEc---CCCcHHHHHHHHHHhCCCeEE
Q 019269 42 FLLKLSCY---DRKGLLYDVTAVLCELELTIE 70 (343)
Q Consensus 42 ~~I~V~~~---Dr~GLl~~i~~~L~~~glnI~ 70 (343)
..|.|+|. +.||+++++..+|...|++|.
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 35778874 789999999999999999997
No 246
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=75.27 E-value=56 Score=35.81 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=61.1
Q ss_pred CCeEEEEEEE---CCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 019269 174 PGHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 174 ~~~t~i~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
.+.+.|+|.+ .+.+|++++|...|+++|+||.. |.+ .. .--+|.+........ .+.++.+.+.| ..
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~--I~s--se--~sis~~i~~~~~~~~-~~~~~~l~~~l----~~ 388 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDL--ISS--SE--TNVTVSLDPSENLVN-TDVLAALSADL----SQ 388 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEE--EEc--CC--CEEEEEEccccccch-HHHHHHHHHHH----hh
Confidence 3456777754 46899999999999999999983 332 22 111244442211111 12233333333 21
Q ss_pred CcceeeecCCCCceeeeeeeEEEEeC---CCccHHHHHHHHHHhCCceE
Q 019269 251 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICI 296 (343)
Q Consensus 251 ~~~~~~~~~~~~~~v~~~~~ieV~~~---DrpGLL~~I~~~l~~~gi~I 296 (343)
...+... . .+ ..|.|.+. .+||++.++..+|.+.||++
T Consensus 389 ~~~i~~~-~----~v---a~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 389 ICRVKII-V----PC---AAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred cCcEEEe-C----Ce---EEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 1111110 1 11 36778876 89999999999999987665
No 247
>PRK14634 hypothetical protein; Provisional
Probab=75.24 E-value=44 Score=28.54 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=50.4
Q ss_pred ccHHHHHHHHHHhCCeeEEEEEEEEeecC-CEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCce
Q 019269 187 KGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTE 264 (343)
Q Consensus 187 pGLl~~i~~~L~~~glnI~~A~i~t~t~g-~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~ 264 (343)
.-+-..+..++..+|+.+.+..+. ..| +.++- .+++ ++|..++ -+..+.+.+.+.+.|+....
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~--~~~~~~~lr-V~ID~~~g~~v~-lddC~~vSr~is~~LD~~d~----------- 71 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVL--THLQPMTLQ-VQIRRSSGSDVS-LDDCAGFSGPMGEALEASQL----------- 71 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEE--eCCCCcEEE-EEEECCCCCccc-HHHHHHHHHHHHHHhccccc-----------
Confidence 456667788899999999999987 343 34453 4455 5564444 45778888888887764211
Q ss_pred eeeeeeEEEEeC--CCc
Q 019269 265 LLVANPVELSGK--GRP 279 (343)
Q Consensus 265 v~~~~~ieV~~~--Drp 279 (343)
+.-.+.+||+++ |||
T Consensus 72 i~~~Y~LEVSSPGldRp 88 (155)
T PRK14634 72 LTEAYVLEISSPGIGDQ 88 (155)
T ss_pred CCCCeEEEEeCCCCCCc
Confidence 112346788876 665
No 248
>PLN02317 arogenate dehydratase
Probab=73.68 E-value=13 Score=36.63 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=29.6
Q ss_pred eeEEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269 269 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 269 ~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
+.|-+.-+|+||.|+++-.+|+.+|||+.+....
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESR 317 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESR 317 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEee
Confidence 4556666899999999999999999999998865
No 249
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=73.39 E-value=8.6 Score=38.45 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=38.6
Q ss_pred eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCC
Q 019269 270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLS 325 (343)
Q Consensus 270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~ 325 (343)
.+-+...|+||-|++|-.+|+++|||+.+.... |..+..-+ |.|||. -+|..
T Consensus 18 SLiFsL~d~pGaL~~vL~vFa~~gINLthIESR-Psk~~~~e--Y~FFVD-~eg~~ 69 (436)
T TIGR01268 18 SLIFSLKEEAGALAETLKLFQAHDVNLTHIESR-PSKTHPGE--YEFFVE-FDEAS 69 (436)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecc-cCCCCCcc--EEEEEE-EecCc
Confidence 455566899999999999999999999998876 44444333 458885 34543
No 250
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=73.38 E-value=19 Score=24.95 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=26.8
Q ss_pred cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEec
Q 019269 49 YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90 (343)
Q Consensus 49 ~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~ 90 (343)
.+++|..+++..+|..+|+|+. -|.|..+. -.|.+..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~--~i~t~~~~---is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVD--LIPTSENS---VTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEE--EEecCCCE---EEEEEeh
Confidence 4678999999999999999998 44453222 2355554
No 251
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=73.38 E-value=32 Score=26.02 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=48.1
Q ss_pred EEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEE-EEEecCCCcccchhHHHHHHHHHHHHhc
Q 019269 41 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDL-FFVTDTRELLHTRKRKEDTYEHLKTILG 113 (343)
Q Consensus 41 ~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~-f~V~~~~g~~~~~~~~~~l~~~L~~~l~ 113 (343)
.+.+.+...++|+.+.++.++....|+-|..-+.++..|+.-..+ |.|.. +-+ .+.|...|++..+
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s-~R~------~~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS-DRS------VDLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC-CCC------hHHHHHHHHHHcc
Confidence 467889999999999999999999999999888877644433333 44432 211 3567777777543
No 252
>PRK14645 hypothetical protein; Provisional
Probab=73.15 E-value=58 Score=27.84 Aligned_cols=91 Identities=13% Similarity=0.050 Sum_probs=55.7
Q ss_pred cccHHHHHHHHHHhCCeeEEEEEEEEeecC-CEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCc
Q 019269 186 HKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDT 263 (343)
Q Consensus 186 rpGLl~~i~~~L~~~glnI~~A~i~t~t~g-~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~ 263 (343)
..-+-..+..++..+|+.+.+..+. ..| ..++- .++. .++..+. -+..+.+-+.+.+.|+....
T Consensus 8 ~~~i~~li~~~~~~~G~elvdve~~--~~~~~~ilr-V~ID~~~~~~v~-lddC~~vSr~is~~LD~~d~---------- 73 (154)
T PRK14645 8 NPDLQQLAEGALEPLGYEVLEVQVQ--RSGGKRIVL-VRIDRKDEQPVT-VEDLERASRALEAELDRLDP---------- 73 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEE--eCCCCeEEE-EEEECCCCCCcC-HHHHHHHHHHHHHHhccccc----------
Confidence 3456777889999999999999986 344 34443 4445 4444444 45778888888777764211
Q ss_pred eeeeeeeEEEEeC--CCccHHHHHHHHHHhCC
Q 019269 264 ELLVANPVELSGK--GRPLVFHDITLALKMLD 293 (343)
Q Consensus 264 ~v~~~~~ieV~~~--DrpGLL~~I~~~l~~~g 293 (343)
+.-.+.+||+++ ||| |...-..-+-.|
T Consensus 74 -i~~~Y~LEVSSPGldRp--L~~~~df~r~~G 102 (154)
T PRK14645 74 -IEGEYRLEVESPGPKRP--LFTARHFERFAG 102 (154)
T ss_pred -CCCceEEEEeCCCCCCC--CCCHHHHHHhCC
Confidence 112346777776 555 444444444444
No 253
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=73.11 E-value=30 Score=24.36 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=24.5
Q ss_pred EEEEEEC---CcccHHHHHHHHHHhCCeeEE
Q 019269 178 LVQIVCQ---DHKGLLYDIMRTLKDYNIQVS 205 (343)
Q Consensus 178 ~i~V~~~---DrpGLl~~i~~~L~~~glnI~ 205 (343)
.|.|.|. +.||+++++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4666664 789999999999999999997
No 254
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=73.05 E-value=27 Score=29.08 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=42.1
Q ss_pred CCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEec
Q 019269 36 PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90 (343)
Q Consensus 36 ~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~ 90 (343)
.....-..+.+.-.||.|.|+++..+++..++||+.-+..---+|.+--+..+..
T Consensus 67 m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ 121 (150)
T COG4492 67 MLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT 121 (150)
T ss_pred cccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc
Confidence 4444556788889999999999999999999999976665434777755555544
No 255
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=72.59 E-value=8.1 Score=25.70 Aligned_cols=33 Identities=27% Similarity=0.204 Sum_probs=27.1
Q ss_pred eEEEEeCC---CccHHHHHHHHHHhCCceEEEEEee
Q 019269 270 PVELSGKG---RPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 270 ~ieV~~~D---rpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
.+.|.+.+ .||.++++..+|.+++++|.....+
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 35555554 8999999999999999999887655
No 256
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.78 E-value=31 Score=24.01 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=24.8
Q ss_pred EEEEEEC---CcccHHHHHHHHHHhCCeeEEEE
Q 019269 178 LVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYG 207 (343)
Q Consensus 178 ~i~V~~~---DrpGLl~~i~~~L~~~glnI~~A 207 (343)
.|.+.|. ++||+++++.++|++.|++|...
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i 35 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMI 35 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEE
Confidence 4555554 68999999999999999999844
No 257
>PRK06349 homoserine dehydrogenase; Provisional
Probab=71.04 E-value=25 Score=35.14 Aligned_cols=51 Identities=24% Similarity=0.439 Sum_probs=38.2
Q ss_pred CCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEec
Q 019269 39 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90 (343)
Q Consensus 39 ~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~ 90 (343)
...+-|.+...|+||.|+++++.|..+|.||.+-..... ++....++.++.
T Consensus 346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~ 396 (426)
T PRK06349 346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTH 396 (426)
T ss_pred ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEE
Confidence 345788889999999999999999999999996655443 233335555554
No 258
>PRK09224 threonine dehydratase; Reviewed
Probab=69.76 E-value=89 Score=31.97 Aligned_cols=149 Identities=11% Similarity=0.154 Sum_probs=81.4
Q ss_pred hhhcCCCCCCCCcccC-----CCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCC
Q 019269 19 IEEETDGCMPFLFFSF-----SPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRE 93 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~-----~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g 93 (343)
+--.|-+++.+..+.+ .-.+..-..+.|.-+||||-|.+++.+|. +.||..-+--....+.+ .+|....-.+
T Consensus 301 v~i~sG~n~~~~~l~~~~~r~~~~~~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a-~V~vgie~~~ 377 (504)
T PRK09224 301 VAILSGANMNFDRLRYVAERAELGEQREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEA-HIFVGVQLSR 377 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeE-EEEEEEEeCC
Confidence 3456777777554443 24455567888889999999999999999 67777543322222222 2333222111
Q ss_pred cccchhHHHHHHHHHHHHhcccccccccccccceeecccCCCCCCchHHH-hhhcccCCCCCCCCCCCCCccEEEEEeCC
Q 019269 94 LLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCSNVSVTIDNSL 172 (343)
Q Consensus 94 ~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~V~i~~~~ 172 (343)
. +...+.|.+.|++ ..-.. .+++ .....+.+ +++- + ...+ .
T Consensus 378 ~---~~~~~~i~~~L~~-~gy~~---------~~ls------~ne~~k~h~r~~~---------g---~~~~-------~ 419 (504)
T PRK09224 378 G---QEERAEIIAQLRA-HGYPV---------VDLS------DDELAKLHVRYMV---------G---GRPP-------K 419 (504)
T ss_pred h---hhHHHHHHHHHHH-cCCCe---------EECC------CCHHHHHHHHhcc---------C---CCCC-------C
Confidence 1 1225667666655 11100 1111 00111222 3331 0 0111 0
Q ss_pred CCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEE
Q 019269 173 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRF 209 (343)
Q Consensus 173 ~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i 209 (343)
..+--.+.|.-|.|||-|.+...+|. -+.||..-+-
T Consensus 420 ~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Y 455 (504)
T PRK09224 420 PLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHY 455 (504)
T ss_pred CCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEE
Confidence 11234677888999999999999776 6778875443
No 259
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=69.53 E-value=6.6 Score=27.88 Aligned_cols=28 Identities=21% Similarity=0.008 Sum_probs=24.3
Q ss_pred eCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269 275 GKGRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 275 ~~DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
.+|+||.++++.+.|.+.|++|......
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 3699999999999999999999866543
No 260
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.42 E-value=42 Score=25.11 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=30.3
Q ss_pred EEEEEE---cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEec
Q 019269 43 LLKLSC---YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 90 (343)
Q Consensus 43 ~I~V~~---~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~ 90 (343)
.|+|.+ ++.||..+++..+|+.+|+||. -|.+..+. -.|.+..
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVD--mI~qs~~s---ISftV~~ 48 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVD--VVATSEVS---ISLTLDP 48 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEE--EEEecCCE---EEEEEEh
Confidence 345543 6789999999999999999998 55553222 2366654
No 261
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=69.05 E-value=29 Score=34.75 Aligned_cols=52 Identities=12% Similarity=0.218 Sum_probs=38.3
Q ss_pred eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecC-CEEEEEEEEecCCC
Q 019269 176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGK 229 (343)
Q Consensus 176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g-~~~~d~F~v~~~g~ 229 (343)
.+.|.+..+|+||-|+++-.+|+.+|+|+. +|.++... ....=.|+|+-+|.
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLt--hIESRPsk~~~~eY~FFVD~eg~ 68 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLT--HIESRPSKTHPGEYEFFVEFDEA 68 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCee--EEecccCCCCCccEEEEEEEecC
Confidence 577777779999999999999999999999 66654322 22223478874443
No 262
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.79 E-value=7.7 Score=26.17 Aligned_cols=28 Identities=21% Similarity=0.011 Sum_probs=25.0
Q ss_pred eCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269 275 GKGRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 275 ~~DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
.+|.||++.++...|.++|++|......
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 4689999999999999999999887664
No 263
>PRK08841 aspartate kinase; Validated
Probab=68.71 E-value=41 Score=33.24 Aligned_cols=94 Identities=11% Similarity=0.091 Sum_probs=56.4
Q ss_pred CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 019269 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRV 254 (343)
Q Consensus 175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~ 254 (343)
+.+.|++.+ +.++++.+.|+++|+++.. +. +..... .|.+. ....+.++ ..+... +
T Consensus 257 ~~~~i~v~~----~~~~~i~~~l~~~~i~v~~--i~--~~~~~~--~~~v~--------~~~~~~~~----~~~~~~--i 312 (392)
T PRK08841 257 DLALIEVES----ESLPSLTKQCQMLGIEVWN--VI--EEADRA--QIVIK--------QDACAKLK----LVFDDK--I 312 (392)
T ss_pred CeEEEEecc----chHHHHHHHHHHcCCCEEE--EE--ecCCcE--EEEEC--------HHHHHHHH----HhCccc--E
Confidence 345566643 3578999999999999883 33 222111 24443 11222221 111111 1
Q ss_pred eeecCCCCceeeeeeeEEEEeCCCccHHHHHHHHHHhCCceEEEEE
Q 019269 255 TVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAE 300 (343)
Q Consensus 255 ~~~~~~~~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~Ak 300 (343)
.. . ..+ ..+.+.+...||+.+++..+|.+.||+|.+..
T Consensus 313 ~~-~----~~~---a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~ 350 (392)
T PRK08841 313 RN-S----ESV---SLLTLVGLEANGMVEHACNLLAQNGIDVRQCS 350 (392)
T ss_pred EE-e----CCE---EEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 10 0 011 26889999999999999999999999996544
No 264
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=68.39 E-value=1.4e+02 Score=30.18 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=65.9
Q ss_pred CCCEEEEEEEEc---CCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhcc
Q 019269 38 PSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 114 (343)
Q Consensus 38 ~~~~~~I~V~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~~ 114 (343)
..+...|+|.+. .++|.++++.+.|..+|+||. -|.+..+... -.|.+... ...+....|.+.+..
T Consensus 304 ~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~--~I~q~~~~~~-i~~~v~~~--------~~~~a~~~l~~~~~~ 372 (447)
T COG0527 304 DDNVALITVSGPGMNGMVGFAARVFGILAEAGINVD--LITQSISEVS-ISFTVPES--------DAPRALRALLEEKLE 372 (447)
T ss_pred CCCeEEEEEEccCccccccHHHHHHHHHHHcCCcEE--EEEeccCCCe-EEEEEchh--------hHHHHHHHHHHHHhh
Confidence 356677888763 345999999999999999997 4433222212 34665432 222333334332211
Q ss_pred cccccccccccceeecccCCCCCCchHHHhhhcccCCCCCCCCCCCCCccEEEEEeCCCCCeEEEEEEE---CCcccHHH
Q 019269 115 AMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVC---QDHKGLLY 191 (343)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~i~V~~---~DrpGLl~ 191 (343)
.. . .+.++ .+.-.|.+.+ +..||..+
T Consensus 373 ~~----------------------------------------------~-~v~~~----~~~a~vsiVG~gm~~~~gvaa 401 (447)
T COG0527 373 LL----------------------------------------------A-EVEVE----EGLALVSIVGAGMRSNPGVAA 401 (447)
T ss_pred hc----------------------------------------------c-eEEee----CCeeEEEEEccccccCcCHHH
Confidence 00 0 11111 1234555655 56789999
Q ss_pred HHHHHHHhCCeeEEEEE
Q 019269 192 DIMRTLKDYNIQVSYGR 208 (343)
Q Consensus 192 ~i~~~L~~~glnI~~A~ 208 (343)
++..+|++.|+||....
T Consensus 402 ~~f~aL~~~~ini~~is 418 (447)
T COG0527 402 RIFQALAEENINIIMIS 418 (447)
T ss_pred HHHHHHHhCCCcEEEEE
Confidence 99999999999999544
No 265
>PRK14636 hypothetical protein; Provisional
Probab=68.00 E-value=70 Score=27.95 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=41.1
Q ss_pred cccHHHHHHHHHHhCCeeEEEEEEEEeecC-CEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcC
Q 019269 186 HKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 186 rpGLl~~i~~~L~~~glnI~~A~i~t~t~g-~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
.+-+...+..++..+|+.+.+..+. ..+ ..++- .++. +++..++ -+..+.+.+.|...|+.
T Consensus 4 ~~~i~~lvep~~~~~GleLvdve~~--~~~~~~~lr-V~ID~~~~ggV~-lDDC~~vSr~Is~~LD~ 66 (176)
T PRK14636 4 IAALTALIEPEAKALGLDLVRVAMF--GGKSDPTLQ-IMAERPDTRQLV-IEDCAALSRRLSDVFDE 66 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEE--cCCCCeEEE-EEEECCCCCCcC-HHHHHHHHHHHHHHhcc
Confidence 3456677888999999999999886 444 33443 4444 4333343 45778888888887763
No 266
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=67.99 E-value=14 Score=36.27 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=43.6
Q ss_pred eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHcC
Q 019269 270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 341 (343)
Q Consensus 270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~~ 341 (343)
.++|.|.||.||..++-..|...+|++....|. . +++ .|+--++ ++.+ ..++++.+|.+
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid--~-~~~------IYln~p~---l~~~-~fs~L~aei~~ 60 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID--P-IGR------IYLNFPE---LEFE-SFSSLMAEIRR 60 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeec--C-CCe------EEEeccc---cCHH-HHHHHHHHHhc
Confidence 479999999999999999999999999999997 3 332 3554343 3334 35666666654
No 267
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=67.43 E-value=52 Score=24.92 Aligned_cols=66 Identities=9% Similarity=0.050 Sum_probs=45.9
Q ss_pred eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 019269 176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 248 (343)
Q Consensus 176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L 248 (343)
.+.+.+.+.++|+.|.++-++-...|..+-....++..+++.+---|.|.. .++ .+.|...|++..
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s-~R~------~~lL~~QLeKl~ 68 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS-DRS------VDLLTSQLEKLY 68 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC-CCC------hHHHHHHHHHHc
Confidence 468899999999999999999999999998776654334555554455542 222 235666665543
No 268
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=65.47 E-value=1.3e+02 Score=33.03 Aligned_cols=37 Identities=22% Similarity=0.471 Sum_probs=28.3
Q ss_pred CCEEEEEEEE---cCCCcHHHHHHHHHHhCCCeEEEEEEEec
Q 019269 39 SDVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKISTT 77 (343)
Q Consensus 39 ~~~~~I~V~~---~Dr~GLl~~i~~~L~~~glnI~~A~i~T~ 77 (343)
.+...|+|.+ .+.+|.++++...|..+|+||. -|.+.
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd--~I~ss 359 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVD--LISSS 359 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEE--EEEcC
Confidence 4455677753 4688999999999999999997 44443
No 269
>PRK08526 threonine dehydratase; Provisional
Probab=65.26 E-value=50 Score=32.73 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=32.3
Q ss_pred CCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEE
Q 019269 173 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRF 209 (343)
Q Consensus 173 ~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i 209 (343)
......+.|.-+||||-|.+++..+.+.+.||.+..-
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~ 359 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDY 359 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEE
Confidence 3456788999999999999999999999999996654
No 270
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=65.09 E-value=18 Score=29.48 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=44.0
Q ss_pred cccccccccchhhcCCCCCCCCcccCCCCCCCEEEEEEEE---cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCC
Q 019269 9 DWGLTNKVGFIEEETDGCMPFLFFSFSPKPSDVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKISTTPDG 80 (343)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~~---~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g 80 (343)
=|-.++.+.-+-..|+.. +.-+--..+.+-..+++-+ .|-+|+++.+.+.|+++|+.|. -++|...+
T Consensus 34 F~sIt~t~eelsivc~~~---~vp~~V~~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIF--avStydtD 103 (128)
T COG3603 34 FWSITRTPEELSIVCLAD---RVPDVVQIEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIF--AVSTYDTD 103 (128)
T ss_pred eEEEEcCCceEEEEeecc---cCCcceEecCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEE--EEEeccCc
Confidence 356666766666777665 2112223334444555544 6888999999999999999999 55665443
No 271
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=64.89 E-value=43 Score=23.09 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=25.5
Q ss_pred EEEEEE---cCCCcHHHHHHHHHHhCCCeEEEE
Q 019269 43 LLKLSC---YDRKGLLYDVTAVLCELELTIEKV 72 (343)
Q Consensus 43 ~I~V~~---~Dr~GLl~~i~~~L~~~glnI~~A 72 (343)
.|.+.| ++.+|+++++..+|...|++|.--
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i 35 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAI 35 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 567777 578999999999999999999733
No 272
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=63.41 E-value=12 Score=24.91 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=23.7
Q ss_pred EEEEECC---cccHHHHHHHHHHhCCeeEEEE
Q 019269 179 VQIVCQD---HKGLLYDIMRTLKDYNIQVSYG 207 (343)
Q Consensus 179 i~V~~~D---rpGLl~~i~~~L~~~glnI~~A 207 (343)
|+|.+.+ .+|.++++.++|++++++|...
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i 34 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMI 34 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEE
Confidence 4455544 8999999999999999999844
No 273
>PRK14630 hypothetical protein; Provisional
Probab=62.49 E-value=81 Score=26.54 Aligned_cols=61 Identities=13% Similarity=0.063 Sum_probs=41.0
Q ss_pred CCcccHHHHHHHHHHhCCeeEEEEEEEEeecCC-EEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcC
Q 019269 184 QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN-CEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 184 ~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~-~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
-|.--+-..+..++..+|+.+.+.... ..++ ..+ .+++. ++| ++ -+..+.+.+.+...|..
T Consensus 5 ~~~~~i~~li~~~~~~~G~eLvdve~~--~~~~~~~l-rV~Id~~~g--V~-idDC~~vSr~i~~~ld~ 67 (143)
T PRK14630 5 FDNSEVYNLIKNVTDRLGIEIIEINTF--RNRNEGKI-QIVLYKKDS--FG-VDTLCDLHKMILLILEA 67 (143)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEEEEEE--ecCCCcEE-EEEEECCCC--CC-HHHHHHHHHHHHHHhcc
Confidence 355567778889999999999999876 3443 444 34445 444 33 34677787777666653
No 274
>PRK08526 threonine dehydratase; Provisional
Probab=62.15 E-value=59 Score=32.23 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=53.8
Q ss_pred hcCCCCCCCCcccC-----CCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC----CEEEEEEEEecC
Q 019269 21 EETDGCMPFLFFSF-----SPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD----GKVMDLFFVTDT 91 (343)
Q Consensus 21 ~~~~~~~~~~~~~~-----~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~----g~~~d~f~V~~~ 91 (343)
-+|=+++++..+.+ --.+.....+.|.-+|+||-|++++..+...+.||.+-.-....+ +.+.-.+.+..
T Consensus 301 ilsGGnid~~~~~~i~~~~l~~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~- 379 (403)
T PRK08526 301 VLSGGNIDVQMLNIIIEKGLIKSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET- 379 (403)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe-
Confidence 34556666443333 245667788999999999999999999999999999765544222 33322233332
Q ss_pred CCcccchhHHHHHHHHHHH
Q 019269 92 RELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 92 ~g~~~~~~~~~~l~~~L~~ 110 (343)
-+++..++|.+.|++
T Consensus 380 ----~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 380 ----KGKEHQEEIRKILTE 394 (403)
T ss_pred ----CCHHHHHHHHHHHHH
Confidence 134555666655544
No 275
>PRK14633 hypothetical protein; Provisional
Probab=62.13 E-value=85 Score=26.63 Aligned_cols=87 Identities=13% Similarity=0.058 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCceeee
Q 019269 189 LLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLV 267 (343)
Q Consensus 189 Ll~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~v~~ 267 (343)
+-..+..++..+|+.+.+.... ..++..+- .+++ ++| ++ -+..+.+.++|...|+.... +.-
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~--~~~~~~lr-V~ID~~~G--v~-lddC~~vSr~i~~~LD~~d~-----------i~~ 68 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVV--GSGKLTIR-IFIDHENG--VS-VDDCQIVSKEISAVFDVEDP-----------VSG 68 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEE--eCCCcEEE-EEEeCCCC--CC-HHHHHHHHHHHHHHhccCcC-----------CCC
Confidence 4456778899999999999986 34544443 3344 444 33 44778888888877763211 112
Q ss_pred eeeEEEEeC--CCccHHHHHHHHHHhCCc
Q 019269 268 ANPVELSGK--GRPLVFHDITLALKMLDI 294 (343)
Q Consensus 268 ~~~ieV~~~--DrpGLL~~I~~~l~~~gi 294 (343)
.+.+||+++ ||| |......-+-.|=
T Consensus 69 ~Y~LEVSSPGldRp--L~~~~~f~r~~G~ 95 (150)
T PRK14633 69 KYILEVSSPGMNRQ--IFNIIQAQALVGF 95 (150)
T ss_pred CeEEEEeCCCCCCC--CCCHHHHHHhCCC
Confidence 346788877 555 4444444444443
No 276
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=61.78 E-value=81 Score=26.75 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCeeEEEEEEEEeecCC-EEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcC
Q 019269 189 LLYDIMRTLKDYNIQVSYGRFSRRQRGN-CEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 189 Ll~~i~~~L~~~glnI~~A~i~t~t~g~-~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
+-..+..++..+|+.+.+..+. ..++ ..+- .+++ ++| + +-+.++.+-+.+.+.|+.
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~--~~~~~~~l~-V~Id~~~g--v-~iddc~~~Sr~is~~LD~ 66 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYV--KEGRDSTLR-IYIDKEGG--I-DLDDCEEVSRQISAVLDV 66 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEE--ecCCCcEEE-EEEECCCC--C-CHHHHHHHHHHHHHHhcc
Confidence 5556788899999999999987 3433 3443 3445 333 3 345788888888888864
No 277
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=61.76 E-value=18 Score=24.51 Aligned_cols=33 Identities=33% Similarity=0.309 Sum_probs=27.4
Q ss_pred eEEEEeC---CCccHHHHHHHHHHhCCceEEEEEee
Q 019269 270 PVELSGK---GRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 270 ~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
.|.+.+. +++|+++++...|.+.++++.....+
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~ 37 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQG 37 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcC
Confidence 4566555 88999999999999999999877654
No 278
>PRK14640 hypothetical protein; Provisional
Probab=61.25 E-value=83 Score=26.73 Aligned_cols=90 Identities=11% Similarity=0.081 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHhCCeeEEEEEEEEeecC-CEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCcee
Q 019269 188 GLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTEL 265 (343)
Q Consensus 188 GLl~~i~~~L~~~glnI~~A~i~t~t~g-~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~v 265 (343)
-+-..+..++..+|+.+.+.... ..+ +..+- .+++ ++| ++ -+..+.+.++|.+.|+.... +
T Consensus 7 ~i~~li~p~~~~~G~el~dve~~--~~~~~~~lr-V~ID~~~g--v~-lddC~~vSr~is~~LD~~d~-----------i 69 (152)
T PRK14640 7 RLTDLLEAPVVALGFELWGIEFI--RAGKHSTLR-VYIDGENG--VS-VENCAEVSHQVGAIMDVEDP-----------I 69 (152)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEE--ecCCCcEEE-EEEECCCC--CC-HHHHHHHHHHHHHHhccccc-----------C
Confidence 35556778899999999999886 333 34443 4445 444 33 45788888888888864311 1
Q ss_pred eeeeeEEEEeC--CCccHHHHHHHHHHhCCceE
Q 019269 266 LVANPVELSGK--GRPLVFHDITLALKMLDICI 296 (343)
Q Consensus 266 ~~~~~ieV~~~--DrpGLL~~I~~~l~~~gi~I 296 (343)
.-.+.+||+++ ||| |......-+-.|=.|
T Consensus 70 ~~~Y~LEVSSPGl~Rp--L~~~~~f~r~~G~~v 100 (152)
T PRK14640 70 TEEYYLEVSSPGLDRP--LFKVAQFEKYVGQEA 100 (152)
T ss_pred CCCeEEEEeCCCCCCc--CCCHHHHHHhCCCeE
Confidence 12346788776 555 444444444444433
No 279
>PRK14647 hypothetical protein; Provisional
Probab=61.23 E-value=86 Score=26.82 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCeeEEEEEEEEeecCC-EEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcC
Q 019269 189 LLYDIMRTLKDYNIQVSYGRFSRRQRGN-CEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 189 Ll~~i~~~L~~~glnI~~A~i~t~t~g~-~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
+-..+..++..+|+.+.+..+. ..|. .++- .+++ +.| ++ -+..+.+-+.+.+.|+.
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~--~~~~~~~lr-V~ID~~~g--vs-lddC~~vSr~is~~LD~ 67 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYK--REGREMVLR-LFIDKEGG--VN-LDDCAEVSRELSEILDV 67 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEE--ecCCCeEEE-EEEeCCCC--CC-HHHHHHHHHHHHHHHcc
Confidence 4456677899999999999987 4443 4443 4445 444 32 44778888888888864
No 280
>PRK14638 hypothetical protein; Provisional
Probab=60.18 E-value=1.1e+02 Score=26.03 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCeeEEEEEEEEeecC-CEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcC
Q 019269 189 LLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 189 Ll~~i~~~L~~~glnI~~A~i~t~t~g-~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
+-..+..++..+|+.+.+.... ..| +..+- .+++ ++|. ++ -+..+.+.+.|.+.|+.
T Consensus 10 i~~~~~~i~~~~G~elvdve~~--~~~~~~~lr-V~ID~~~G~-v~-lddC~~vSr~is~~LD~ 68 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYR--RESRGWVLR-IIIDNPVGY-VS-VRDCELFSREIERFLDR 68 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEE--ecCCCcEEE-EEEECCCCC-cC-HHHHHHHHHHHHHHhcc
Confidence 4456778899999999999886 343 34443 4445 4442 33 45778888888887764
No 281
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.41 E-value=55 Score=22.48 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=25.0
Q ss_pred EEEEEE---CCcccHHHHHHHHHHhCCeeEEEEE
Q 019269 178 LVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGR 208 (343)
Q Consensus 178 ~i~V~~---~DrpGLl~~i~~~L~~~glnI~~A~ 208 (343)
.|.+.| ++.+|+++++.+.|++.|++|....
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~ 36 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMIS 36 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 455555 4779999999999999999998443
No 282
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=58.47 E-value=47 Score=24.35 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=33.1
Q ss_pred CCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269 184 QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 246 (343)
Q Consensus 184 ~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~ 246 (343)
.-.||+++++.++|+++|+||. .|. + ++ .--.|.+..+ .+.+ +..+.|.+.|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd--~I~--~-s~-~~isftv~~~--~~~~-~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVD--LIS--T-SE-VHVSMALHME--NAED-TNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEE--EEE--e-CC-CEEEEEEehh--hcCh-HHHHHHHHHHHH
Confidence 3458999999999999999999 443 2 22 1122444422 2222 255666666654
No 283
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=58.39 E-value=91 Score=30.92 Aligned_cols=54 Identities=9% Similarity=-0.082 Sum_probs=39.9
Q ss_pred hcCCCCCCCCcccC-----CCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEE
Q 019269 21 EETDGCMPFLFFSF-----SPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKI 74 (343)
Q Consensus 21 ~~~~~~~~~~~~~~-----~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i 74 (343)
-+|-+++.+....+ --.+.....+.+.-+||||-|.+++..+...+.||..-+-
T Consensus 300 ilsGgn~d~~~~~~~~~~~l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y 358 (409)
T TIGR02079 300 VVSGGNNDIERTEEIRERSLLYEGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEY 358 (409)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEe
Confidence 45666666443333 3455677889999999999999999977778889995443
No 284
>PRK14639 hypothetical protein; Provisional
Probab=56.73 E-value=1.2e+02 Score=25.45 Aligned_cols=54 Identities=11% Similarity=0.039 Sum_probs=35.6
Q ss_pred HHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 019269 193 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 193 i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
+..++..+|+.+.+.... ..++.-.-.++++.++. ++ -+..+.+.+.|.+.|+.
T Consensus 3 ~ep~~~~~G~eLvdve~~--~~~~~~~lrV~Id~~~g-v~-iddC~~vSr~is~~LD~ 56 (140)
T PRK14639 3 LEALCKECGVSFYDDELV--SENGRKIYRVYITKEGG-VN-LDDCERLSELLSPIFDV 56 (140)
T ss_pred hhHhHHhCCCEEEEEEEE--ecCCCcEEEEEEeCCCC-CC-HHHHHHHHHHHHHHhcc
Confidence 456788999999999887 44443333345553332 33 45788888888888864
No 285
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.66 E-value=64 Score=22.34 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=25.7
Q ss_pred EEEEEEEc---CCCcHHHHHHHHHHhCCCeEEEE
Q 019269 42 FLLKLSCY---DRKGLLYDVTAVLCELELTIEKV 72 (343)
Q Consensus 42 ~~I~V~~~---Dr~GLl~~i~~~L~~~glnI~~A 72 (343)
..|.++|. +++|..+++..+|...|+++.--
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i 35 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMI 35 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEE
Confidence 35677774 68899999999999999999733
No 286
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=56.09 E-value=73 Score=23.35 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=34.0
Q ss_pred cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 49 YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 49 ~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
...+|+++++.++|+.+|+||. -|.+..+. -.|.+.. +. .+.+.++.|...|++
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd--~I~~s~~~---isftv~~--~~-~~~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVD--LISTSEVH---VSMALHM--EN-AEDTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEE--EEEeCCCE---EEEEEeh--hh-cChHHHHHHHHHHHH
Confidence 3468999999999999999998 45452222 2255543 22 112255666666665
No 287
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.77 E-value=23 Score=26.57 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=23.7
Q ss_pred eCCCccHHHHHHHHHHhCCceEEEEE
Q 019269 275 GKGRPLVFHDITLALKMLDICIFSAE 300 (343)
Q Consensus 275 ~~DrpGLL~~I~~~l~~~gi~I~~Ak 300 (343)
.++.||++++|-.+|+++|++|....
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~ 36 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA 36 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE
Confidence 35889999999999999999999984
No 288
>PRK08639 threonine dehydratase; Validated
Probab=53.63 E-value=83 Score=31.30 Aligned_cols=54 Identities=9% Similarity=-0.058 Sum_probs=38.8
Q ss_pred hcCCCCCCCCcccC-----CCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEE
Q 019269 21 EETDGCMPFLFFSF-----SPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKI 74 (343)
Q Consensus 21 ~~~~~~~~~~~~~~-----~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i 74 (343)
-.|-+++.+.+..+ --.+.....+.+.-+||||-|.+++..+...+.||..-+-
T Consensus 311 v~sGgn~d~~~~~~~~~~~l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~ 369 (420)
T PRK08639 311 VISGGNNDIERMPEIKERSLIYEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEY 369 (420)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEE
Confidence 34555665433333 2456677889999999999999999977777779996543
No 289
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=52.57 E-value=2.7e+02 Score=30.40 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=26.4
Q ss_pred CeEEEEEEE---CCcccHHHHHHHHHHhCCeeEE
Q 019269 175 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVS 205 (343)
Q Consensus 175 ~~t~i~V~~---~DrpGLl~~i~~~L~~~glnI~ 205 (343)
+...|.|.| ..++|+..++..+|++.|+++.
T Consensus 390 ~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii 423 (810)
T PRK09466 390 GLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFI 423 (810)
T ss_pred CeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEE
Confidence 456788887 4689999999999999999996
No 290
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=52.38 E-value=1.6e+02 Score=34.45 Aligned_cols=209 Identities=14% Similarity=0.033 Sum_probs=109.0
Q ss_pred CCCCEEEEEEEE-cCCCc--HHHHHHHHHHhC-CCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHh
Q 019269 37 KPSDVFLLKLSC-YDRKG--LLYDVTAVLCEL-ELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 112 (343)
Q Consensus 37 ~~~~~~~I~V~~-~Dr~G--Ll~~i~~~L~~~-glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l 112 (343)
..+.+..+.|+. +|+.. +-.+|...|... +....+-...-.....+---|++....+...+ -..+.|++.|.++.
T Consensus 337 ~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~~~~~~~-~d~~~le~~l~~~~ 415 (1528)
T PF05088_consen 337 PFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVDPGHEPD-IDVEALEARLAEAT 415 (1528)
T ss_pred CCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeCCCCCCC-CCHHHHHHHHHHHH
Confidence 345555555555 66663 677888877654 44444444444345556556777665554321 22345666555544
Q ss_pred ccccccccccc---ccceeecccCCCCCCchHHHhhhcccC----CCCCC-------CCCCCCCccEEEEEe--CCCCCe
Q 019269 113 GNAMISCDVEM---VGTEITACSQASSFLPSAIIDMLHLDM----PVELP-------SGSLTCSNVSVTIDN--SLSPGH 176 (343)
Q Consensus 113 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~V~i~~--~~~~~~ 176 (343)
....+...-.+ -|+.. + ..+-.+....|..+. +.+.+ .......+..+.+.. ....+.
T Consensus 416 r~W~d~l~~~l~~~~g~~~-----~-~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~~~~ 489 (1528)
T PF05088_consen 416 RSWEDRLREALVERYGEEQ-----G-ARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAGPGR 489 (1528)
T ss_pred CCHHHHHHHHHHHhcChhh-----h-HHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCCCCe
Confidence 32111000000 00000 0 000001111121111 00000 011112234444442 233467
Q ss_pred EEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeec--CC-EEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCCc
Q 019269 177 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR--GN-CEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQPL 252 (343)
Q Consensus 177 t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~--g~-~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~~~ 252 (343)
+.+.++.+.++..|+++.-+|..+|+.|.+.+-+.-.. |. ..+..|.+. ..+..+...+..+.+++++.++..+..
T Consensus 490 ~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v~~g~~ 569 (1528)
T PF05088_consen 490 LRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAVWNGRA 569 (1528)
T ss_pred EEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999877553222 22 355568886 555444445566788888877776654
No 291
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=52.33 E-value=67 Score=32.88 Aligned_cols=85 Identities=11% Similarity=0.175 Sum_probs=52.4
Q ss_pred hhhcCCCCCCCCcccC-----CCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCC
Q 019269 19 IEEETDGCMPFLFFSF-----SPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRE 93 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~-----~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g 93 (343)
+--.|-+++.+..+.+ .-.++.-..+.|.-|||||-|.+++.+|.. .||..-+--....+.+ .+|..-.-
T Consensus 298 v~i~sG~n~~~~~l~~~~~r~~~~~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a-~v~vgie~-- 372 (499)
T TIGR01124 298 VAILSGANMNFHRLRYVSERCELGEQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDA-HIFVGVQL-- 372 (499)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeE-EEEEEEEe--
Confidence 3456777887654433 244556678888899999999999999997 4776444332222332 33332221
Q ss_pred cccchhHHHHHHHHHHH
Q 019269 94 LLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 94 ~~~~~~~~~~l~~~L~~ 110 (343)
.+++..+.|.+.|++
T Consensus 373 --~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 373 --SNPQERQEILARLND 387 (499)
T ss_pred --CCHHHHHHHHHHHHH
Confidence 134566777776655
No 292
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.28 E-value=71 Score=21.55 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=24.4
Q ss_pred EEEEEE---cCCCcHHHHHHHHHHhCCCeEEEE
Q 019269 43 LLKLSC---YDRKGLLYDVTAVLCELELTIEKV 72 (343)
Q Consensus 43 ~I~V~~---~Dr~GLl~~i~~~L~~~glnI~~A 72 (343)
.|+|.+ .+.+|+++++...|..+|+++..-
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i 34 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMI 34 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 356665 467899999999999999999743
No 293
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=51.97 E-value=60 Score=35.98 Aligned_cols=46 Identities=9% Similarity=0.068 Sum_probs=40.4
Q ss_pred cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCc
Q 019269 49 YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTREL 94 (343)
Q Consensus 49 ~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~ 94 (343)
+...|+|+.++.++..+|+.+..+.+-+..+|..+-.|||+...+.
T Consensus 241 ~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~ 286 (1002)
T PTZ00324 241 YYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD 286 (1002)
T ss_pred CcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC
Confidence 3344899999999999999999999999999999999999986554
No 294
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=51.77 E-value=36 Score=23.10 Aligned_cols=31 Identities=26% Similarity=0.215 Sum_probs=25.7
Q ss_pred EEEEe---CCCccHHHHHHHHHHhCCceEEEEEe
Q 019269 271 VELSG---KGRPLVFHDITLALKMLDICIFSAEI 301 (343)
Q Consensus 271 ieV~~---~DrpGLL~~I~~~l~~~gi~I~~AkI 301 (343)
+.|.+ .+.||++.++...|.+.|+++.....
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 55554 47799999999999999999987753
No 295
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=51.22 E-value=49 Score=24.28 Aligned_cols=50 Identities=18% Similarity=0.084 Sum_probs=35.0
Q ss_pred CCccHHH----HHHHHHHhCCce-EEEEEeeccccCceEeeeeEEEEEcCCCCCCCchHHHHHHHHHHcCCC
Q 019269 277 GRPLVFH----DITLALKMLDIC-IFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 343 (343)
Q Consensus 277 DrpGLL~----~I~~~l~~~gi~-I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~~~~~~~~l~~~L~~~~ 343 (343)
=+||++- .|.++|.++|++ +..+++. ..|++. | .+++ ..+.+.+.|+.|.
T Consensus 9 ~k~gv~Dp~G~ti~~~l~~lg~~~v~~Vr~~-----------k~~~l~---~--~~~~-~~~~i~~~lL~Np 63 (73)
T PRK06423 9 YKPGVEDPEALTILKNLNILGYNGIKGVSIS-----------KVYYFD---A--DSYN-EVDEIAGKILTNP 63 (73)
T ss_pred ECCCCcChHHHHHHHHHHHcCCCCcceEEEE-----------EEEEEe---c--CCHH-HHHHHHHHhcCCc
Confidence 4777763 477888889987 8888887 447773 3 3344 4678888887663
No 296
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=51.03 E-value=26 Score=25.12 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=25.5
Q ss_pred EEEEEEE-cCCCcHHHHHHHHHHhCCCeEEEE
Q 019269 42 FLLKLSC-YDRKGLLYDVTAVLCELELTIEKV 72 (343)
Q Consensus 42 ~~I~V~~-~Dr~GLl~~i~~~L~~~glnI~~A 72 (343)
..|+|.+ ++.+|..+++.+.|+.+|+||---
T Consensus 2 ~~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 2 TQIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 3566765 567999999999999999999844
No 297
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.02 E-value=84 Score=22.05 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=22.6
Q ss_pred EEEEEEC---CcccHHHHHHHHHHhCCeeEE
Q 019269 178 LVQIVCQ---DHKGLLYDIMRTLKDYNIQVS 205 (343)
Q Consensus 178 ~i~V~~~---DrpGLl~~i~~~L~~~glnI~ 205 (343)
.|.+.|. +.||+++++.++|.+.++++.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i 32 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLV 32 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEE
Confidence 3566664 679999999999999887774
No 298
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.85 E-value=78 Score=21.66 Aligned_cols=31 Identities=10% Similarity=0.093 Sum_probs=25.6
Q ss_pred EEEEEEEc---CCCcHHHHHHHHHHhCCCeEEEE
Q 019269 42 FLLKLSCY---DRKGLLYDVTAVLCELELTIEKV 72 (343)
Q Consensus 42 ~~I~V~~~---Dr~GLl~~i~~~L~~~glnI~~A 72 (343)
..|.++|. +.+|+++++...|+.+|++|.--
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i 35 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMI 35 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 35677774 77899999999999999999733
No 299
>PLN02550 threonine dehydratase
Probab=50.76 E-value=2.8e+02 Score=29.15 Aligned_cols=117 Identities=10% Similarity=0.079 Sum_probs=69.3
Q ss_pred CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 019269 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRV 254 (343)
Q Consensus 175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~ 254 (343)
....+.|.-+||||-|.+++.++... ||.+..-.. ...+.+.-.+.+.. .+++..++|.++|.+ .....
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~-~~~~~~~v~v~ie~-----~~~~~~~~i~~~l~~---~g~~~ 484 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRY-SSEKEALVLYSVGV-----HTEQELQALKKRMES---AQLRT 484 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEe-cCCCceEEEEEEEe-----CCHHHHHHHHHHHHH---CCCCe
Confidence 44678899999999999999999986 777544321 12223332223332 234566777777653 11211
Q ss_pred -eeecCC--------C---CceeeeeeeEEEEeCCCccHHHHHHHHHHhC-CceEEEEEee
Q 019269 255 -TVVSRG--------P---DTELLVANPVELSGKGRPLVFHDITLALKML-DICIFSAEIG 302 (343)
Q Consensus 255 -~~~~~~--------~---~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~-gi~I~~AkI~ 302 (343)
++.... . -.++.---.+.+.=+.|||-|.+...+|... +|.-++=+.+
T Consensus 485 ~~l~~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~YR~~ 545 (591)
T PLN02550 485 VNLTSNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPRWNISLFHYRGQ 545 (591)
T ss_pred EeCCCChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCCCceeeEEeecC
Confidence 111000 0 0111111257888899999999999999873 7776666633
No 300
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.08 E-value=88 Score=22.00 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=24.3
Q ss_pred EEEEEEC--CcccHHHHHHHHHHhCCeeEEEEE
Q 019269 178 LVQIVCQ--DHKGLLYDIMRTLKDYNIQVSYGR 208 (343)
Q Consensus 178 ~i~V~~~--DrpGLl~~i~~~L~~~glnI~~A~ 208 (343)
.|.+.|. ..+|++.++..+|++.|++|....
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~ 35 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMIS 35 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 4555554 458999999999999999998443
No 301
>PRK14632 hypothetical protein; Provisional
Probab=50.05 E-value=1.6e+02 Score=25.65 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcC
Q 019269 189 LLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 189 Ll~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
+-..+..++..+|+.+.+.... ..+...+- .+++ +.| ++ -+..+.+.+.|.+.|+.
T Consensus 10 i~~li~pv~~~~G~eLvdve~~--~~~~~~lr-V~ID~~~G--V~-ldDC~~vSr~is~~LD~ 66 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELS--YGGRTVVR-LFVDGPEG--VT-IDQCAEVSRHVGLALEV 66 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEE--eCCCcEEE-EEEECCCC--CC-HHHHHHHHHHHHHHhcc
Confidence 4556777889999999999975 33333443 3445 444 32 44778888888888764
No 302
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.99 E-value=82 Score=21.61 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=25.2
Q ss_pred EEEEEEC---CcccHHHHHHHHHHhCCeeEEEEE
Q 019269 178 LVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGR 208 (343)
Q Consensus 178 ~i~V~~~---DrpGLl~~i~~~L~~~glnI~~A~ 208 (343)
.|.+.|. ++||+.+++...|++.|+++....
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 36 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMIN 36 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 4556664 679999999999999999998543
No 303
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=49.44 E-value=79 Score=21.29 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=24.4
Q ss_pred EEEEEE---cCCCcHHHHHHHHHHhCCCeEEEE
Q 019269 43 LLKLSC---YDRKGLLYDVTAVLCELELTIEKV 72 (343)
Q Consensus 43 ~I~V~~---~Dr~GLl~~i~~~L~~~glnI~~A 72 (343)
.|+|.+ .+.+|+++++.+.|...|+++..-
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i 34 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMI 34 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEE
Confidence 356664 467899999999999999999743
No 304
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=48.55 E-value=1.6e+02 Score=29.19 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=41.9
Q ss_pred CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecC-CEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 019269 174 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 246 (343)
Q Consensus 174 ~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g-~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~ 246 (343)
.....+.+.-+||||=|.+++..+...+.||...+-.. ..+ +.+.-.+.+.. .+++..+++.+.|.+
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~-~~~~~~~~v~v~iE~-----~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTK-KSNRETGPALIGIEL-----NDKEDFAGLLERMAA 390 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeee-cCCCCeEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 45678899999999999999997777777999554321 111 22221233332 124466677777643
No 305
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=48.00 E-value=37 Score=33.56 Aligned_cols=120 Identities=13% Similarity=0.170 Sum_probs=64.5
Q ss_pred eEEEEEEEC---CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC--
Q 019269 176 HTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ-- 250 (343)
Q Consensus 176 ~t~i~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~-- 250 (343)
-++|.|... -+.|.|+.|..+|.++|+.+- -|.| . .+.-..-+.+ .+.. -.+.|+..|.++...
T Consensus 393 v~mldI~Str~l~q~GFLAkvFti~ek~~isVD--vvaT--S--EV~iSltL~~--~~~~---sreliq~~l~~a~eeL~ 461 (559)
T KOG0456|consen 393 VTMLDIASTRMLGQHGFLAKVFTIFEKLGISVD--VVAT--S--EVSISLTLDP--SKLD---SRELIQGELDQAVEELE 461 (559)
T ss_pred EEEEEecccchhhhhhHHHHHHHHHHHhCcEEE--EEEe--e--eEEEEEecCh--hhhh---hHHHHHhhHHHHHHHHH
Confidence 455555442 346999999999999999886 4443 2 2221122221 1111 111222222222111
Q ss_pred Cc-ceeeecCCCCceeeeeeeEEEEe--CCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcC
Q 019269 251 PL-RVTVVSRGPDTELLVANPVELSG--KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 321 (343)
Q Consensus 251 ~~-~~~~~~~~~~~~v~~~~~ieV~~--~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~ 321 (343)
.+ .+++.... .++.+.+ +...|++-+.-++|++.||||++ |+ .|..-.+. =+|.+.
T Consensus 462 ki~~vdll~~~--------sIiSLiGnvq~ss~i~~rmF~~l~e~giNvqM--IS---QGAskvNI--S~ivne 520 (559)
T KOG0456|consen 462 KIAVVDLLKGR--------SIISLIGNVQNSSGILERMFCVLAENGINVQM--IS---QGASKVNI--SCIVNE 520 (559)
T ss_pred Hhhhhhhhccc--------hHHhhhhhhhhhhHHHHHHHHHHHhcCcceee--ec---cccccceE--EEEECh
Confidence 00 11111111 1334443 36779999999999999999997 44 66666665 455543
No 306
>PRK14631 hypothetical protein; Provisional
Probab=47.54 E-value=1.9e+02 Score=25.19 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHhCCeeEEEEEEEEeecC-CEEEEEEEEec----------------CCCCCCChHHHHHHHHHHHHHHcC
Q 019269 188 GLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQA----------------DGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 188 GLl~~i~~~L~~~glnI~~A~i~t~t~g-~~~~d~F~v~~----------------~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
-+...+..+++.+|+.+.+..+. ..+ ..++-+|+=.+ .+..++ -+..+.+-+.|.+.|+.
T Consensus 9 ~i~~li~p~~~~~G~eLvdve~~--~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvt-iddC~~vSr~is~~LD~ 85 (174)
T PRK14631 9 ALTDIIAPAVAACGVDLWGIEFL--PQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIG-VEDCVRVTQQVGAMLDV 85 (174)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEE--eCCCceEEEEEEecCcccccccccccccccccCCCcC-HHHHHHHHHHHHHHhcc
Confidence 45667788899999999999987 344 34454443222 112233 44778888888777763
Q ss_pred CcceeeecCCCCceeeeeeeEEEEeC--CCccHHHHHHHHHHhCCce
Q 019269 251 PLRVTVVSRGPDTELLVANPVELSGK--GRPLVFHDITLALKMLDIC 295 (343)
Q Consensus 251 ~~~~~~~~~~~~~~v~~~~~ieV~~~--DrpGLL~~I~~~l~~~gi~ 295 (343)
... +.-.+.+||+++ ||| |......-+-.|=.
T Consensus 86 ~d~-----------i~~~Y~LEVSSPGldRp--L~~~~df~r~~G~~ 119 (174)
T PRK14631 86 HDP-----------ISGEYALEVSSPGWDRP--FFQLEQLQGYIGQQ 119 (174)
T ss_pred ccc-----------CCCCeEEEEeCCCCCCc--CCCHHHHHHhCCCe
Confidence 211 112346888877 554 55555555554533
No 307
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=47.46 E-value=29 Score=35.59 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=30.8
Q ss_pred EEEEEECCcccHHHHHHHHHHhCCeeEEEEEEE
Q 019269 178 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 210 (343)
Q Consensus 178 ~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~ 210 (343)
.++|.|.||.|+..+|...|..+++|+....|.
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~ 34 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEID 34 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEc
Confidence 478999999999999999999999999988886
No 308
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=46.97 E-value=1.3e+02 Score=25.05 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=30.3
Q ss_pred HHHHHHhCCeeEEEEEEEEeecCCE-EEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 019269 193 IMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 250 (343)
Q Consensus 193 i~~~L~~~glnI~~A~i~t~t~g~~-~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~ 250 (343)
|..++..+|+.+.+..+.. .++. .+-+ ++..++. ++ -+.++.+-+.+...|+.
T Consensus 2 i~~~~~~~g~~l~~v~~~~--~~~~~~l~V-~id~~~g-v~-lddc~~~sr~i~~~LD~ 55 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVK--EGGNRILRV-FIDKDGG-VS-LDDCEKVSRAISALLDA 55 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEE--ETTEEEEEE-EEE-SS-----HHHHHHHHHHHGGGTTT
T ss_pred cccchhhcCCEEEEEEEEE--CCCCEEEEE-EEEeCCC-CC-HHHHHHHHHHHHHHHcc
Confidence 4567889999999999873 4444 4433 3333333 43 45677777777666654
No 309
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=46.31 E-value=87 Score=20.87 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=25.1
Q ss_pred EEEEEEc---CCCcHHHHHHHHHHhCCCeEEEE
Q 019269 43 LLKLSCY---DRKGLLYDVTAVLCELELTIEKV 72 (343)
Q Consensus 43 ~I~V~~~---Dr~GLl~~i~~~L~~~glnI~~A 72 (343)
.|++.+. +.+|+.+++...|...+.++..-
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i 34 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMI 34 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEE
Confidence 4677654 78999999999999999999744
No 310
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.12 E-value=99 Score=21.17 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=25.4
Q ss_pred EEEEEEc---CCCcHHHHHHHHHHhCCCeEEEE
Q 019269 43 LLKLSCY---DRKGLLYDVTAVLCELELTIEKV 72 (343)
Q Consensus 43 ~I~V~~~---Dr~GLl~~i~~~L~~~glnI~~A 72 (343)
.|.++|. +.+|+.+++...|+..|+++.-.
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i 35 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMI 35 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 5777774 67899999999999999999744
No 311
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.75 E-value=99 Score=20.78 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=23.6
Q ss_pred EEEEE---CCcccHHHHHHHHHHhCCeeEEEE
Q 019269 179 VQIVC---QDHKGLLYDIMRTLKDYNIQVSYG 207 (343)
Q Consensus 179 i~V~~---~DrpGLl~~i~~~L~~~glnI~~A 207 (343)
|++.+ .+.+|++.++...|++.|+++...
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i 34 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMI 34 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 44544 467999999999999999999744
No 312
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.66 E-value=73 Score=23.85 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=35.1
Q ss_pred CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 019269 185 DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 248 (343)
Q Consensus 185 DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L 248 (343)
...|++.++-++|.++|+++. ++. .| .|.|.+.-+...+.++ ..+++.++|.+.+
T Consensus 13 ~evGF~rk~L~I~E~~~is~E--h~P---SG---ID~~Siii~~~~~~~~-~~~~i~~~i~~~~ 67 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYE--HMP---SG---IDDISIIIRDNQLTDE-KEQKILAEIKEEL 67 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEe--eec---CC---CccEEEEEEccccchh-hHHHHHHHHHHhc
Confidence 456999999999999999999 543 23 3445554222334422 4556666665544
No 313
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=43.13 E-value=48 Score=25.51 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCceEEEEEeeccccCce-EeeeeEEEEEcCCCCCCC
Q 019269 282 FHDITLALKMLDICIFSAEIGRHMIGDR-EWEVYRVLLDEGDGLSVP 327 (343)
Q Consensus 282 L~~I~~~l~~~gi~I~~AkI~~~T~g~~-~~dv~~F~v~~~~g~~l~ 327 (343)
+..+.+.|.+.|+.+...-.. ..|.. .... ||+.||+|..++
T Consensus 79 ~~~~~~~l~~~G~~~~~~~~~--~~~~~~~~~~--~~~~DPdG~~ve 121 (125)
T cd07253 79 IDELVAHLEAHGVPIEEGPVP--RTGARGPITS--VYFRDPDGNLIE 121 (125)
T ss_pred HHHHHHHHHHCCceeecCccc--ccCCCCCccE--EEEECCCCCEEE
Confidence 788899999999998766554 33322 1234 899999998764
No 314
>PRK12483 threonine dehydratase; Reviewed
Probab=41.84 E-value=4.1e+02 Score=27.39 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=71.9
Q ss_pred CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHH-HHHHHHHHHHHcCCc
Q 019269 174 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQ-NGLSSRLWMELLQPL 252 (343)
Q Consensus 174 ~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~-~~l~~~L~~~L~~~~ 252 (343)
.....+.|.-+||||-|.+++.+|... ||.+..-.. .....+.-.+.+... +++.. ++|.++|.+ ...
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~-~~~~~~~v~v~ie~~-----~~~~~~~~i~~~l~~---~g~ 411 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRY-ADAREAHLFVGVQTH-----PRHDPRAQLLASLRA---QGF 411 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEe-cCCCeeEEEEEEEeC-----ChhhhHHHHHHHHHH---CCC
Confidence 456788899999999999999999988 777544331 111222211223221 22333 566666543 222
Q ss_pred cee-eec--------C----CCCceeeeeeeEEEEeCCCccHHHHHHHHHHh-CCceEEEEEeeccccCceEeee
Q 019269 253 RVT-VVS--------R----GPDTELLVANPVELSGKGRPLVFHDITLALKM-LDICIFSAEIGRHMIGDREWEV 313 (343)
Q Consensus 253 ~~~-~~~--------~----~~~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~-~gi~I~~AkI~~~T~g~~~~dv 313 (343)
... +.. | +..+.+.--..+.|.=+.|||-|.+..++|.. .+|.-++=+.. |.....+
T Consensus 412 ~~~dlsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~~----~~~~a~v 482 (521)
T PRK12483 412 PVLDLTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRNH----GAADGRV 482 (521)
T ss_pred CeEECCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecCC----CCCceEE
Confidence 211 100 0 11111111125788889999999999999997 37776666654 4444445
No 315
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.54 E-value=1.2e+02 Score=21.22 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=25.0
Q ss_pred EEEEEEc--CCCcHHHHHHHHHHhCCCeEEEEE
Q 019269 43 LLKLSCY--DRKGLLYDVTAVLCELELTIEKVK 73 (343)
Q Consensus 43 ~I~V~~~--Dr~GLl~~i~~~L~~~glnI~~A~ 73 (343)
.|.++|. ..+|+++++..+|.+.|++|.--.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~ 35 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMIS 35 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 5667764 457999999999999999997433
No 316
>PLN02550 threonine dehydratase
Probab=41.38 E-value=4.5e+02 Score=27.65 Aligned_cols=85 Identities=12% Similarity=0.151 Sum_probs=52.0
Q ss_pred hhhcCCCCCCCCcccC-----CCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCC
Q 019269 19 IEEETDGCMPFLFFSF-----SPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRE 93 (343)
Q Consensus 19 ~~~~~~~~~~~~~~~~-----~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g 93 (343)
+.-.|=+++.+..+.+ ...+.....+.|.-+||||-|.+++.+|... ||.+-+-....-+.+--.+.|..
T Consensus 390 v~vlsGgNid~~~l~~v~~~~~~~~~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~--- 464 (591)
T PLN02550 390 VAITSGANMNFDRLRIVTELADVGRQQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGV--- 464 (591)
T ss_pred EEEecCCCCCHHHHHHHHHHHHhccCCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEe---
Confidence 4456778887654444 2334445678889999999999999999986 77754433322233222222322
Q ss_pred cccchhHHHHHHHHHHH
Q 019269 94 LLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 94 ~~~~~~~~~~l~~~L~~ 110 (343)
-+++..+.|.+.|++
T Consensus 465 --~~~~~~~~i~~~l~~ 479 (591)
T PLN02550 465 --HTEQELQALKKRMES 479 (591)
T ss_pred --CCHHHHHHHHHHHHH
Confidence 134556666666655
No 317
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=41.11 E-value=71 Score=24.37 Aligned_cols=48 Identities=6% Similarity=0.056 Sum_probs=33.5
Q ss_pred eEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCC
Q 019269 270 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 327 (343)
Q Consensus 270 ~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~ 327 (343)
.+.+...| +....+.|.+.|+++...... ..|.. .+ ||+.|++|..+.
T Consensus 64 ~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~--~~~~~--~~--~~~~DPdG~~~~ 111 (114)
T cd07247 64 LVYFAVDD----VDAAAARVEAAGGKVLVPPTD--IPGVG--RF--AVFADPEGAVFG 111 (114)
T ss_pred EEEEEeCC----HHHHHHHHHHCCCEEEeCCcc--cCCcE--EE--EEEECCCCCEEE
Confidence 34555666 677888899999998866444 22222 35 999999998753
No 318
>PRK08639 threonine dehydratase; Validated
Probab=40.73 E-value=2.4e+02 Score=27.99 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=29.3
Q ss_pred CCCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEE
Q 019269 173 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR 208 (343)
Q Consensus 173 ~~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~ 208 (343)
+.....+.+.-+||||-|.++...+...+.||..-+
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~ 368 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFE 368 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEE
Confidence 345678899999999999999996666666998654
No 319
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=39.80 E-value=48 Score=23.74 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=24.0
Q ss_pred EEEEEE-CCcccHHHHHHHHHHhCCeeEEEE
Q 019269 178 LVQIVC-QDHKGLLYDIMRTLKDYNIQVSYG 207 (343)
Q Consensus 178 ~i~V~~-~DrpGLl~~i~~~L~~~glnI~~A 207 (343)
.|+|.+ ++.||.+++|.+.|+++|+||-.-
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 344443 356999999999999999999855
No 320
>PRK12483 threonine dehydratase; Reviewed
Probab=39.40 E-value=4.5e+02 Score=27.12 Aligned_cols=54 Identities=9% Similarity=0.081 Sum_probs=39.2
Q ss_pred hcCCCCCCCCcccC-----CCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEe
Q 019269 21 EETDGCMPFLFFSF-----SPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST 76 (343)
Q Consensus 21 ~~~~~~~~~~~~~~-----~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T 76 (343)
-+|=+++++..+.+ --.++....+.|.-+||||-|.+++.+|... ||.+-.-..
T Consensus 320 IlsGgNid~~~l~~i~~r~l~~~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~ 378 (521)
T PRK12483 320 IDSGANVNFDRLRHVAERAELGEQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRY 378 (521)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEe
Confidence 35666777543333 3445667788999999999999999999988 777554443
No 321
>PRK09224 threonine dehydratase; Reviewed
Probab=39.32 E-value=4.4e+02 Score=26.96 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=71.0
Q ss_pred CeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEE-EecCCCCCCChHHHHHHHHHHHHHHcCCcc
Q 019269 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFI-MQADGKKIVDPSKQNGLSSRLWMELLQPLR 253 (343)
Q Consensus 175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~-v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~ 253 (343)
....+.|.-+||||=|.+++.+|. +.||..-.-. ..+.....+|. +...+. +...+.|.+.|.+ ....
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr--~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~---~gy~ 395 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYR--YADAKEAHIFVGVQLSRG----QEERAEIIAQLRA---HGYP 395 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEE--ecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHH---cCCC
Confidence 456888999999999999999999 6777754432 12222223333 332211 1125667777643 1122
Q ss_pred ee-eec--------C----CCCceeeeeeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeee
Q 019269 254 VT-VVS--------R----GPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEV 313 (343)
Q Consensus 254 ~~-~~~--------~----~~~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv 313 (343)
.. +.. | +..+.+.-.-.+.+.=+.|||-|-+...+|. -+-||...+=. -.|...--+
T Consensus 396 ~~~ls~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr--~~~~~~g~v 465 (504)
T PRK09224 396 VVDLSDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR--NHGADYGRV 465 (504)
T ss_pred eEECCCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc--cCCcccccE
Confidence 11 100 0 1111111112578888999999999988776 56677766665 444444444
No 322
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.96 E-value=1.5e+02 Score=22.13 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=37.9
Q ss_pred cCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHHHhc
Q 019269 49 YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG 113 (343)
Q Consensus 49 ~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~~l~ 113 (343)
....|...++..+|..+|+++. ++-|..|+.. ..+.+ . .++.++.+++...|++.+.
T Consensus 12 n~evGF~rk~L~I~E~~~is~E--h~PSGID~~S---iii~~--~-~~~~~~~~~i~~~i~~~~~ 68 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYE--HMPSGIDDIS---IIIRD--N-QLTDEKEQKILAEIKEELH 68 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEe--eecCCCccEE---EEEEc--c-ccchhhHHHHHHHHHHhcC
Confidence 4566999999999999999999 6656434322 33332 2 2334466777777777664
No 323
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.66 E-value=60 Score=22.82 Aligned_cols=28 Identities=11% Similarity=0.062 Sum_probs=22.8
Q ss_pred eEEEEeC---CCccHHHHHHHHHHhCCceEE
Q 019269 270 PVELSGK---GRPLVFHDITLALKMLDICIF 297 (343)
Q Consensus 270 ~ieV~~~---DrpGLL~~I~~~l~~~gi~I~ 297 (343)
.+.+.|. +.||+++++.++|.+.++++.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i 32 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLV 32 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEE
Confidence 4566665 789999999999999877763
No 324
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=38.11 E-value=98 Score=22.14 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=22.2
Q ss_pred HHHHHhCCCeEEEEEEEecCCCEEEEEEEEecC
Q 019269 59 TAVLCELELTIEKVKISTTPDGKVMDLFFVTDT 91 (343)
Q Consensus 59 ~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~ 91 (343)
......+|..+..=.+.| .||+++.++.+...
T Consensus 2 ~~~i~~~GY~~E~h~V~T-~DGYiL~l~RIp~~ 33 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTT-EDGYILTLHRIPPG 33 (63)
T ss_dssp HHHHHHTT---EEEEEE--TTSEEEEEEEE-SB
T ss_pred HHHHHHcCCCcEEEEEEe-CCCcEEEEEEccCC
Confidence 345678899999888888 69999999998764
No 325
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=37.73 E-value=59 Score=24.97 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=31.4
Q ss_pred EEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCC
Q 019269 273 LSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSV 326 (343)
Q Consensus 273 V~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l 326 (343)
..+.+..- |.++.+-|.+.|+.+....-. ...+.. +.||++||+|..+
T Consensus 79 ~~~~~~~d-l~~~~~~l~~~g~~~~~~~~~--~~~~~~---~~~y~~Dp~G~~i 126 (128)
T PF00903_consen 79 FLAFDVDD-LDAAYERLKAQGVEIVEEPDR--YYFGSG---YSFYFRDPDGNLI 126 (128)
T ss_dssp EEESSHHH-HHHHHHHHHHTTGEEEEEEEE--HSTTCE---EEEEEEETTSEEE
T ss_pred EEeccHHH-HHHHHHHHhhcCccEEecCCC--CCCCCE---EEEEEECCCCCEE
Confidence 33343333 355778899999999977655 443333 2368999998654
No 326
>PRK05925 aspartate kinase; Provisional
Probab=37.63 E-value=4.4e+02 Score=26.50 Aligned_cols=104 Identities=17% Similarity=0.073 Sum_probs=58.1
Q ss_pred CeEEEEEEEC-CcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcc
Q 019269 175 GHTLVQIVCQ-DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR 253 (343)
Q Consensus 175 ~~t~i~V~~~-DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~ 253 (343)
+.+.+++.+. ..+|.++++.+.|+++|++|... .+ + .. --.|.+..+. .. ....+ .|...+..-..
T Consensus 299 ~~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i--~s-~-~~--sis~~i~~~~--~~-~~~~~----~l~~~l~~~~~ 365 (440)
T PRK05925 299 NQALWSVDYNSLGLVRLEDVLGILRSLGIVPGLV--MA-Q-NL--GVYFTIDDDD--IS-EEYPQ----HLTDALSAFGT 365 (440)
T ss_pred CEEEEEEecCCcchhHHHHHHHHHHHcCCcEEEE--ec-c-CC--EEEEEEechh--cc-HHHHH----HHHHHhcCCce
Confidence 3456666433 24688999999999999999743 22 2 21 1235554221 11 11122 22222332111
Q ss_pred eeeecCCCCceeeeeeeEEEEeC--CCccHHHHHHHHHHhCCceEEEE
Q 019269 254 VTVVSRGPDTELLVANPVELSGK--GRPLVFHDITLALKMLDICIFSA 299 (343)
Q Consensus 254 ~~~~~~~~~~~v~~~~~ieV~~~--DrpGLL~~I~~~l~~~gi~I~~A 299 (343)
+... ..+ ..|.|.|. -++|+..++..+|++.||||...
T Consensus 366 i~~~-----~~~---a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~i 405 (440)
T PRK05925 366 VSCE-----GPL---ALITMIGAKLASWKVVRTFTEKLRGYQTPVFCW 405 (440)
T ss_pred EEEE-----CCE---EEEEEeCCCcccccHHHHHHHHHhhCCCCEEEE
Confidence 1110 011 25667765 23789999999999999999763
No 327
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=36.23 E-value=1.6e+02 Score=21.12 Aligned_cols=32 Identities=9% Similarity=0.191 Sum_probs=25.6
Q ss_pred EEEEEEE---cCCCcHHHHHHHHHHhCCCeEEEEE
Q 019269 42 FLLKLSC---YDRKGLLYDVTAVLCELELTIEKVK 73 (343)
Q Consensus 42 ~~I~V~~---~Dr~GLl~~i~~~L~~~glnI~~A~ 73 (343)
..|++.+ .+.+|+.+++..+|+..|+++.--.
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~ 36 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILIS 36 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 3567754 4678999999999999999997433
No 328
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=35.93 E-value=1.7e+02 Score=21.09 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=24.3
Q ss_pred EEEEEE---CCcccHHHHHHHHHHhCCeeEEEE
Q 019269 178 LVQIVC---QDHKGLLYDIMRTLKDYNIQVSYG 207 (343)
Q Consensus 178 ~i~V~~---~DrpGLl~~i~~~L~~~glnI~~A 207 (343)
.|++.+ .+.+|+++++.++|++.++++...
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i 35 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILI 35 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEE
Confidence 455543 477999999999999999999844
No 329
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.85 E-value=2.8e+02 Score=23.70 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=49.8
Q ss_pred ccHHHHHHHHHHhCCeeEEEEEEEEeecC-CEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCcee
Q 019269 187 KGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTEL 265 (343)
Q Consensus 187 pGLl~~i~~~L~~~glnI~~A~i~t~t~g-~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~v 265 (343)
..+..-+-.++..+|+.+.+.++. ..| +.++-+| +...|. ++ =+..+.+.+.+.+.|+.+.. +
T Consensus 8 ~~v~~liep~~~~lG~ELv~ve~~--~~~~~~~lrI~-id~~g~-v~-lddC~~vSr~is~~LD~edp-----------i 71 (153)
T COG0779 8 EKVTELIEPVVESLGFELVDVEFV--KEGRDSVLRIY-IDKEGG-VT-LDDCADVSRAISALLDVEDP-----------I 71 (153)
T ss_pred HHHHHHHHHhHhhcCcEEEEEEEE--EcCCCcEEEEE-eCCCCC-CC-HHHHHHHHHHHHHHhccCCc-----------c
Confidence 346666778899999999999997 444 3454333 332222 22 34677888888887774311 1
Q ss_pred eeeeeEEEEeC--CCccH
Q 019269 266 LVANPVELSGK--GRPLV 281 (343)
Q Consensus 266 ~~~~~ieV~~~--DrpGL 281 (343)
.-.+.+||+++ |||=-
T Consensus 72 ~~~Y~LEVSSPGldRpL~ 89 (153)
T COG0779 72 EGAYFLEVSSPGLDRPLK 89 (153)
T ss_pred cccEEEEeeCCCCCCCcC
Confidence 22356888877 77743
No 330
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=35.41 E-value=1.9e+02 Score=21.56 Aligned_cols=57 Identities=16% Similarity=0.027 Sum_probs=37.4
Q ss_pred eCCCccHHH----HHHHHHHhCCce-EEEEEeeccccCceEeeeeEEEEEc-CCCCCCCchHHHHHHHHHHcCCC
Q 019269 275 GKGRPLVFH----DITLALKMLDIC-IFSAEIGRHMIGDREWEVYRVLLDE-GDGLSVPRNKIEEGVWKLLMGWE 343 (343)
Q Consensus 275 ~~DrpGLL~----~I~~~l~~~gi~-I~~AkI~~~T~g~~~~dv~~F~v~~-~~g~~l~~~~~~~~l~~~L~~~~ 343 (343)
-.-|||++- .|.+.|.++|++ +.+.++. ..|.+.- .+....+.+ ..+.+.+.|+.|+
T Consensus 7 V~~k~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~-----------k~~~l~~~~~~~~~a~~-~v~~i~~~lL~Np 69 (80)
T PRK05974 7 VTLKEGVLDPQGQAIKGALGSLGYDGVEDVRQG-----------KYFELELEGESEEKAEA-DLKEMCEKLLANP 69 (80)
T ss_pred EEECCCCcChHHHHHHHHHHHcCCCCcceEEEE-----------EEEEEEEcCCchhhhHH-HHHHHHHHhcCCc
Confidence 335777774 477788889997 7877777 3366642 223344444 4788888888763
No 331
>PRK14643 hypothetical protein; Provisional
Probab=34.92 E-value=3e+02 Score=23.73 Aligned_cols=92 Identities=11% Similarity=0.002 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHhCCeeEEEEEEEEeecCC-EEEEEEEEec---CCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCc
Q 019269 188 GLLYDIMRTLKDYNIQVSYGRFSRRQRGN-CEIDLFIMQA---DGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDT 263 (343)
Q Consensus 188 GLl~~i~~~L~~~glnI~~A~i~t~t~g~-~~~d~F~v~~---~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~ 263 (343)
-+-..+..++..+|+.+.+.... ..|+ .++- .+++. .+..++ -+..+.+.+.+.+.|+....
T Consensus 10 ~l~~l~~p~~~~~G~eL~die~~--~~~~~~~lr-V~Id~~~~~~ggvt-ldDC~~vSr~is~~LD~~d~---------- 75 (164)
T PRK14643 10 QINELVNKELEVLNLKVYEINNL--KEFENDMIQ-ILVEDILQANKPLD-FDILIKANDLVSNKIDQFIK---------- 75 (164)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEE--ecCCCcEEE-EEEecCCCcCCCcC-HHHHHHHHHHHHHHhCccCC----------
Confidence 34556777889999999999887 4444 4444 44431 212243 44777888888887763211
Q ss_pred eeeeeeeEEEEeC--CCccHHHHHHHHHHhCCceE
Q 019269 264 ELLVANPVELSGK--GRPLVFHDITLALKMLDICI 296 (343)
Q Consensus 264 ~v~~~~~ieV~~~--DrpGLL~~I~~~l~~~gi~I 296 (343)
+.-.+.+||+++ ||| |......-+-.|-.|
T Consensus 76 -i~~~Y~LEVSSPGleRp--L~~~~df~r~~G~~V 107 (164)
T PRK14643 76 -TSEKYLLEISSSGIEKQ--IRSQEELVKALNQWV 107 (164)
T ss_pred -CCCCeEEEecCCCCCCC--CCCHHHHHHhcCCeE
Confidence 112346788877 444 444444444444433
No 332
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=32.55 E-value=1.8e+02 Score=20.53 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=23.9
Q ss_pred EEEEEEC--CcccHHHHHHHHHHhCCeeEEEE
Q 019269 178 LVQIVCQ--DHKGLLYDIMRTLKDYNIQVSYG 207 (343)
Q Consensus 178 ~i~V~~~--DrpGLl~~i~~~L~~~glnI~~A 207 (343)
.|.+.|. .+||+.+++.++|.+.|+++...
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i 35 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAA 35 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEE
Confidence 4556653 26899999999999999999843
No 333
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=32.09 E-value=89 Score=23.18 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=30.6
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCC
Q 019269 271 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 327 (343)
Q Consensus 271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~ 327 (343)
+-+...| +.+..+.+.+.|+.+....-. -.|. .. ||+.|++|..++
T Consensus 68 ~~~~v~d----~~~~~~~l~~~g~~~~~~~~~--~~~~---~~--~~~~DP~G~~iE 113 (114)
T cd07245 68 IAFRVDD----LDAFRARLKAAGVPYTESDVP--GDGV---RQ--LFVRDPDGNRIE 113 (114)
T ss_pred EEEEeCC----HHHHHHHHHHcCCCcccccCC--CCCc---cE--EEEECCCCCEEe
Confidence 3444456 677889999999987654321 1222 24 899999998753
No 334
>PRK08841 aspartate kinase; Validated
Probab=31.13 E-value=2.5e+02 Score=27.72 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=30.4
Q ss_pred CCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEE
Q 019269 38 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIE 70 (343)
Q Consensus 38 ~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~ 70 (343)
..+...|.+++...||+.+++..+|...|+||+
T Consensus 315 ~~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~ 347 (392)
T PRK08841 315 SESVSLLTLVGLEANGMVEHACNLLAQNGIDVR 347 (392)
T ss_pred eCCEEEEEEECCCChHHHHHHHHHHHhCCCCEE
Confidence 367788999999999999999999999999996
No 335
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=31.04 E-value=60 Score=25.13 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCceEEEEEeeccccCc--eEeeeeEEEEEcCCCCCCC
Q 019269 281 VFHDITLALKMLDICIFSAEIGRHMIGD--REWEVYRVLLDEGDGLSVP 327 (343)
Q Consensus 281 LL~~I~~~l~~~gi~I~~AkI~~~T~g~--~~~dv~~F~v~~~~g~~l~ 327 (343)
=+.++.+-|.+.|+.+...-.. ...+ -.... ||+.|++|..++
T Consensus 77 dv~~~~~~l~~~g~~~~~~p~~--~~~~~~~~~~~--~~~~DPdG~~iE 121 (125)
T cd08357 77 EFDALAERLEAAGVEFLIEPYT--RFEGQPGEQET--FFLKDPSGNALE 121 (125)
T ss_pred HHHHHHHHHHHCCCcEecCcce--eccCCcCceeE--EEEECCCCCEEE
Confidence 4678888999999998764332 1111 11244 899999998764
No 336
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=30.84 E-value=71 Score=24.54 Aligned_cols=63 Identities=22% Similarity=0.161 Sum_probs=35.2
Q ss_pred EEEEEEEEcCCCcHHHHHHHHHHhCC-CeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 41 VFLLKLSCYDRKGLLYDVTAVLCELE-LTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 41 ~~~I~V~~~Dr~GLl~~i~~~L~~~g-lnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
-..+.|.-|.|||-|.+.+.++...+ +.-.+=+......+.++--|.|.+ ++..+.+.+.|.+
T Consensus 10 E~~~~v~~PE~pGal~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~-------~~~~~~l~~~L~~ 73 (91)
T PF00585_consen 10 EALFAVEFPERPGALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPD-------AEDLEELIERLKA 73 (91)
T ss_dssp EEEEEEE--BSTTHCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SS-------THHHHHHHHHHTS
T ss_pred EEEEEEECCCCccHHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCC-------HHHHHHHHHHHHH
Confidence 34677888999999999999887665 333322332323456666666543 3334555544443
No 337
>PRK00907 hypothetical protein; Provisional
Probab=29.54 E-value=2.7e+02 Score=21.60 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=36.4
Q ss_pred eEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEE--eecCCEEEEEEEEec
Q 019269 176 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR--RQRGNCEIDLFIMQA 226 (343)
Q Consensus 176 ~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t--~t~g~~~~d~F~v~~ 226 (343)
.+.+.|.|.++++|...|..++..+.-.....++.. +..|.+..-++.+..
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a 69 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA 69 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE
Confidence 478999999999999999999999877665555532 134544444455543
No 338
>PRK04460 nickel responsive regulator; Provisional
Probab=28.88 E-value=3.4e+02 Score=22.62 Aligned_cols=74 Identities=7% Similarity=-0.014 Sum_probs=47.6
Q ss_pred cccCCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 31 FFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 31 ~~~~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
+|..++..--.+...||=..+.++-.+++.+-.++.=.|.+.-=.-+.+..++.+|.|..+ ..+++.|.+.|..
T Consensus 45 ~~~~~~~~~~Gvi~vvYdH~~~~l~~~l~~iqH~~~d~Iiss~HvHld~~~ClEvivv~G~------~~~I~~L~~~l~~ 118 (137)
T PRK04460 45 EWEEGDEEVAGTVTLVYNHHVSDLAQKLTEIQHDHHDEIISSLHVHLDHHNCLEVLVLKGK------AKEIKKIADRLIS 118 (137)
T ss_pred hhhcCCCeEEEEEEEEEeCCcchHHHHHHHHHHhhhceEEEEEEEecCCCcEEEEEEEEcC------HHHHHHHHHHHHh
Confidence 4555432222334445556677899999999988765555443333357779999999752 5567777777663
No 339
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=27.80 E-value=84 Score=26.91 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=30.6
Q ss_pred CCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEe
Q 019269 39 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST 76 (343)
Q Consensus 39 ~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T 76 (343)
.....+.|.-+|+||-+.++..=|+..|.||.+ -+++
T Consensus 3 ~mritldIEL~D~PGQLl~vLqPls~~g~NiIt-IiH~ 39 (170)
T COG2061 3 QMRITLDIELKDKPGQLLKVLQPLSKTGANIIT-IIHS 39 (170)
T ss_pred ceEEEEEEEecCCCcchhhhhcchhhcCccEEE-EEee
Confidence 345677888999999999999999999999993 3444
No 340
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=27.52 E-value=5e+02 Score=26.53 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=64.5
Q ss_pred CCeEEEEEEECCcccHHHHHHHHHHhCCeeEEEEEEEEeecCCEEEEEEE-EecCCCCCCChHHHHHHHHHHHHHHcCCc
Q 019269 174 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFI-MQADGKKIVDPSKQNGLSSRLWMELLQPL 252 (343)
Q Consensus 174 ~~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~t~g~~~~d~F~-v~~~g~~i~~~~~~~~l~~~L~~~L~~~~ 252 (343)
.....+.|.-+||||-|.+++.++.. .||...+-.. ...+.+ .+|. +.. .+++..++|.+.|.+ .. .
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~-~~~~~a-~v~vgie~-----~~~~~~~~l~~~L~~-~G--y 390 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRY-ADRKDA-HIFVGVQL-----SNPQERQEILARLND-GG--Y 390 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEe-cCCCeE-EEEEEEEe-----CCHHHHHHHHHHHHH-cC--C
Confidence 35568889999999999999999997 4676444321 222232 2333 332 234566777777643 11 2
Q ss_pred cee-eec--------C----CCCceeeeeeeEEEEeCCCccHHHHHHHHHHhCCceEEEEEee
Q 019269 253 RVT-VVS--------R----GPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 253 ~~~-~~~--------~----~~~~~v~~~~~ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
... +.. | +..+.+.---...+.=+-|||-|-+.-.+|.. +-||...+=.
T Consensus 391 ~~~dls~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l~~-~~~It~f~Yr 452 (499)
T TIGR01124 391 SVVDLTDDELAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTLQG-YWNISLFHYR 452 (499)
T ss_pred CeEECCCCHHHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhcCC-CCceeeEEEe
Confidence 111 100 0 11111111125678889999988887665432 2355555543
No 341
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=26.46 E-value=2.9e+02 Score=21.04 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=39.1
Q ss_pred EEEeCCCccHH----HHHHHHHHhCCce-EEEEEeeccccCceEeeeeEEEEEcCC-CCCCCchHHHHHHHHHHcCCC
Q 019269 272 ELSGKGRPLVF----HDITLALKMLDIC-IFSAEIGRHMIGDREWEVYRVLLDEGD-GLSVPRNKIEEGVWKLLMGWE 343 (343)
Q Consensus 272 eV~~~DrpGLL----~~I~~~l~~~gi~-I~~AkI~~~T~g~~~~dv~~F~v~~~~-g~~l~~~~~~~~l~~~L~~~~ 343 (343)
.|.-.-+||+| ..|.++|..+|.+ |...++. .+ |++.-.. +.....+ ..+++.+.|++|.
T Consensus 5 ~V~V~lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~g---------K~--~el~ld~~~~e~a~~-~v~~mcekLLaNp 70 (83)
T COG1828 5 RVYVTLKPGVLDPEGETIEKALHRLGYNEVSDVRVG---------KV--IELELDAESEEKAEE-EVKEMCEKLLANP 70 (83)
T ss_pred EEEEEeCCcccCchhHHHHHHHHHcCCcccceeeee---------eE--EEEEecCcchhHHHH-HHHHHHHHHhCCC
Confidence 33334455655 3599999999988 9999988 44 6664322 2222223 5688888888873
No 342
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=26.00 E-value=1.3e+02 Score=22.35 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCC
Q 019269 282 FHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 327 (343)
Q Consensus 282 L~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~ 327 (343)
..++.+.+.+.|.+|...++. ..|. |.+++.+.+|++++
T Consensus 31 ~~~~~~~l~~~G~~v~~ve~~--~~g~-----yev~~~~~dG~~~e 69 (83)
T PF13670_consen 31 IEQAVAKLEAQGYQVREVEFD--DDGC-----YEVEARDKDGKKVE 69 (83)
T ss_pred HHHHHHHHHhcCCceEEEEEc--CCCE-----EEEEEEECCCCEEE
Confidence 677999999999999999995 2222 45678888888765
No 343
>PRK14644 hypothetical protein; Provisional
Probab=26.00 E-value=3.9e+02 Score=22.25 Aligned_cols=80 Identities=6% Similarity=0.037 Sum_probs=47.9
Q ss_pred HHHHHhCCeeEEEEEEEEeecCC-EEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCceeeeeeeEE
Q 019269 194 MRTLKDYNIQVSYGRFSRRQRGN-CEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVE 272 (343)
Q Consensus 194 ~~~L~~~glnI~~A~i~t~t~g~-~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~v~~~~~ie 272 (343)
..++..+|+.+.+.... ..++ .++- .+++.. +-+..+.+.+.|.+.|+.... +.-.+.+|
T Consensus 5 e~~~~~~g~el~dve~~--~~~~~~~Lr-V~Idk~-----~iddC~~vSr~is~~LD~~d~-----------i~~~Y~LE 65 (136)
T PRK14644 5 EKLLEKFGNKINEIKIV--KEDGDLFLE-VILNSR-----DLKDIEELTKEISDFIDNLSV-----------EFDFDSLD 65 (136)
T ss_pred hhhHHhcCCEEEEEEEE--eCCCCEEEE-EEECCC-----CHHHHHHHHHHHHHHhccccC-----------CCCCeEEE
Confidence 45788999999999887 4443 4443 333321 234677788888777763211 11235789
Q ss_pred EEeC--CCccHHHHHHHHHHhCCce
Q 019269 273 LSGK--GRPLVFHDITLALKMLDIC 295 (343)
Q Consensus 273 V~~~--DrpGLL~~I~~~l~~~gi~ 295 (343)
|+++ |||= .. ...-+-.|=.
T Consensus 66 VSSPGldRpL--~~-~~f~r~~G~~ 87 (136)
T PRK14644 66 ISSPGFDMDY--ET-DELENHIGEI 87 (136)
T ss_pred EECCCCCCCC--CH-HHHHHhCCCe
Confidence 9977 9993 33 3444444433
No 344
>PRK03094 hypothetical protein; Provisional
Probab=25.93 E-value=2.1e+02 Score=21.68 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCceEEEEE
Q 019269 282 FHDITLALKMLDICIFSAE 300 (343)
Q Consensus 282 L~~I~~~l~~~gi~I~~Ak 300 (343)
|.+|...|++.|..|...+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~ 28 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLR 28 (80)
T ss_pred cHHHHHHHHHCCCEEEecC
Confidence 5679999999999997765
No 345
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=25.70 E-value=86 Score=26.84 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=28.8
Q ss_pred CeEEEEEEECCcccHHHHHHHHHHhCCeeEEE
Q 019269 175 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSY 206 (343)
Q Consensus 175 ~~t~i~V~~~DrpGLl~~i~~~L~~~glnI~~ 206 (343)
....+.|.-+|+||-|-.+-+=|+..|.||..
T Consensus 4 mritldIEL~D~PGQLl~vLqPls~~g~NiIt 35 (170)
T COG2061 4 MRITLDIELKDKPGQLLKVLQPLSKTGANIIT 35 (170)
T ss_pred eEEEEEEEecCCCcchhhhhcchhhcCccEEE
Confidence 34678899999999999999999999999984
No 346
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=25.56 E-value=1.4e+02 Score=22.03 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=26.7
Q ss_pred eEEEEeC---CCccHHHHHHHHHHhCCceEEEEEee
Q 019269 270 PVELSGK---GRPLVFHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 270 ~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~AkI~ 302 (343)
.|+|+.+ ..+|.-++|..+|.+++++|.+=.++
T Consensus 3 alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K~~n 38 (71)
T cd04910 3 ALEVFDQDMVGEVGYDLEILELLQRFKVSIIAKDTN 38 (71)
T ss_pred EEEEeCCCccCChhHHHHHHHHHHHcCCeEEEEecC
Confidence 4567666 46888999999999999999887554
No 347
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.39 E-value=70 Score=24.81 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCC
Q 019269 282 FHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 327 (343)
Q Consensus 282 L~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~ 327 (343)
|.++.+-|.+.|+.+...--. ..+...... +|+.||+|..++
T Consensus 72 l~~~~~~l~~~G~~~~~~~~~--~~~~~~~~~--~~~~DP~G~~ie 113 (120)
T cd07254 72 VAEAKARAEAAGLPTFKEEDT--TCCYAVQDK--VWVTDPDGNAWE 113 (120)
T ss_pred HHHHHHHHHHcCCeEEccCCc--ccccCCcce--EEEECCCCCEEE
Confidence 566778889999988654322 222212344 899999998775
No 348
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=25.34 E-value=1.6e+02 Score=22.38 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=31.7
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCC
Q 019269 271 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSV 326 (343)
Q Consensus 271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l 326 (343)
+-+.+.| +.++.+-+.+.|+.+..-... . + .... +|+.|++|..+
T Consensus 74 i~~~v~d----id~~~~~l~~~G~~~~~~~~~--~-~--~~~~--~~~~DpdG~~i 118 (121)
T cd07233 74 LAFAVDD----VYAACERLEEMGVEVTKPPGD--G-G--MKGI--AFIKDPDGYWI 118 (121)
T ss_pred EEEEeCC----HHHHHHHHHHCCCEEeeCCcc--C-C--CceE--EEEECCCCCEE
Confidence 4455556 888999999999999864333 2 2 1234 88999999865
No 349
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=25.33 E-value=2.2e+02 Score=21.53 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCceEEEEEee
Q 019269 282 FHDITLALKMLDICIFSAEIG 302 (343)
Q Consensus 282 L~~I~~~l~~~gi~I~~AkI~ 302 (343)
|.+|...|.+.|..+....-.
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred chHHHHHHHHCCCEEEecCCc
Confidence 568999999999999887744
No 350
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=24.25 E-value=79 Score=25.88 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=26.3
Q ss_pred eEEEEeC---CCccHHHHHHHHHHhCCceEEEEEe
Q 019269 270 PVELSGK---GRPLVFHDITLALKMLDICIFSAEI 301 (343)
Q Consensus 270 ~ieV~~~---DrpGLL~~I~~~l~~~gi~I~~AkI 301 (343)
.+.+.++ |-+|+|..|.+.|++.||.|.-...
T Consensus 65 ~lk~~gpf~FgltGilasV~~pLsd~gigIFavSt 99 (128)
T COG3603 65 CLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVST 99 (128)
T ss_pred EEEEeccccCCcchhhhhhhhhHhhCCccEEEEEe
Confidence 4455554 9999999999999999999987554
No 351
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=24.06 E-value=3.1e+02 Score=20.39 Aligned_cols=55 Identities=18% Similarity=0.105 Sum_probs=34.3
Q ss_pred CCccHHH----HHHHHHHhCCce-EEEEEeeccccCceEeeeeEEEEEcCCCCCCC-chHHHHHHHHHHcCCC
Q 019269 277 GRPLVFH----DITLALKMLDIC-IFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP-RNKIEEGVWKLLMGWE 343 (343)
Q Consensus 277 DrpGLL~----~I~~~l~~~gi~-I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~-~~~~~~~l~~~L~~~~ 343 (343)
-|||++- .|.++|.++|++ |..+++. ..|.++- +|..-. ..+..+.+.+.|+.|+
T Consensus 9 ~k~gV~Dp~G~ti~~~l~~lg~~~v~~Vr~~-----------k~~~l~~-~~~~~~~a~~~v~~i~~~lL~Np 69 (80)
T TIGR00302 9 LKKGVLDPEGAAIQRALALLGYNEVKDVRTG-----------KVIELTI-EADSEEAVEREVEEMCEKLLANP 69 (80)
T ss_pred ECCCCcChHHHHHHHHHHHcCCCCcceEEEE-----------EEEEEEE-cCCChhhHHHHHHHHHHHhcCCc
Confidence 4777774 477778889997 8887777 3365642 332211 1224688888888763
No 352
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.94 E-value=97 Score=23.65 Aligned_cols=49 Identities=10% Similarity=0.031 Sum_probs=29.8
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCC
Q 019269 271 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 327 (343)
Q Consensus 271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~ 327 (343)
+.+...|+..+ ..+...+.++|+.|...-.. ...++ . ||++||+|..+.
T Consensus 63 ~~~~v~~~~~~-~~~~~~~~~~g~~v~~~~~~--~~~g~---~--~~~~DPdGn~ie 111 (114)
T cd07261 63 LAFMVDDGAAV-DALYAEWQAKGVKIIQEPTE--MDFGY---T--FVALDPDGHRLR 111 (114)
T ss_pred EEEEcCCHHHH-HHHHHHHHHCCCeEecCccc--cCCcc---E--EEEECCCCCEEE
Confidence 34445554444 44555566799988764333 22223 4 899999998763
No 353
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=23.73 E-value=84 Score=24.16 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCC
Q 019269 281 VFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 327 (343)
Q Consensus 281 LL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~ 327 (343)
=+.++.+.|.+.|+.+... .. ..+.+ . ||+.||+|..++
T Consensus 67 d~~~~~~~l~~~Gi~~~~~-~~--~~~~~---~--~~~~DP~Gn~ie 105 (112)
T cd08344 67 DFAAFARHLEAAGVALAAA-PP--GADPD---G--VWFRDPDGNLLQ 105 (112)
T ss_pred hHHHHHHHHHHcCCceecC-CC--cCCCC---E--EEEECCCCCEEE
Confidence 3566778889999987643 22 33322 4 899999999875
No 354
>PHA03169 hypothetical protein; Provisional
Probab=23.35 E-value=4.7e+02 Score=25.73 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=33.3
Q ss_pred CCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCC
Q 019269 38 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD 79 (343)
Q Consensus 38 ~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~ 79 (343)
....+.-.|+++..|--|++|+++|..-|+ .+.-|.++.+
T Consensus 318 ~p~~W~~~v~fWgdP~~LyrLsraLqfpG~--~ssgvq~lP~ 357 (413)
T PHA03169 318 RPGPWCWVVFCWGDPYSLYRLSRCLQFPGA--VSSGVQTFPD 357 (413)
T ss_pred CCCceeEEEEecCCcHHHHHHHHHhccCCe--eccceeecCC
Confidence 346788889999999999999999999998 6667777754
No 355
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=23.22 E-value=1.1e+02 Score=30.33 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=42.8
Q ss_pred chhhcCCCCCCCCcccC-----CCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEE
Q 019269 18 FIEEETDGCMPFLFFSF-----SPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKV 72 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A 72 (343)
-+..+|-++|.+..+.. --.+.....+.+.-+|+||-|.+++.++...+.++.+-
T Consensus 345 vv~ilsG~n~~~~~L~~viera~~g~~~~v~l~v~l~d~pG~~~~l~~~i~~~~~se~~~ 404 (457)
T KOG1250|consen 345 VVSILSGGNIDFDSLGRVIERACAGSNREVRLLVALPDRPGGFNKLTELIGPLSVSEKDI 404 (457)
T ss_pred EEeecccCCCCcccccceeEEeeccCCceEeeeeecccCCCcchhhHHhhcccccchhhh
Confidence 56678888888777644 23444455677888999999999999999999998743
No 356
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=22.79 E-value=2e+02 Score=21.38 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCC
Q 019269 282 FHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSV 326 (343)
Q Consensus 282 L~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l 326 (343)
+.++...+.++|+.+..--.. ...+. -. ||+.|++|..+
T Consensus 67 v~~~~~~l~~~G~~~~~~~~~--~~~g~--~~--~~~~DPdG~~i 105 (108)
T PF12681_consen 67 VDALYERLKELGAEIVTEPRD--DPWGQ--RS--FYFIDPDGNRI 105 (108)
T ss_dssp HHHHHHHHHHTTSEEEEEEEE--ETTSE--EE--EEEE-TTS-EE
T ss_pred HHHHHHHHHHCCCeEeeCCEE--cCCCe--EE--EEEECCCCCEE
Confidence 455666778899998664333 22221 24 99999999754
No 357
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.33 E-value=2.7e+02 Score=19.13 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEEEC---CcccHHHHHHHHHHhCCeeE
Q 019269 178 LVQIVCQ---DHKGLLYDIMRTLKDYNIQV 204 (343)
Q Consensus 178 ~i~V~~~---DrpGLl~~i~~~L~~~glnI 204 (343)
.|.+.|. ++||+++++..+|++.++.+
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~~ 32 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVRM 32 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeEE
Confidence 4566665 78999999999998644443
No 358
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=22.33 E-value=2.9e+02 Score=19.46 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=24.6
Q ss_pred EEEEEEEcC--CCcHHHHHHHHHHhCCCeEE
Q 019269 42 FLLKLSCYD--RKGLLYDVTAVLCELELTIE 70 (343)
Q Consensus 42 ~~I~V~~~D--r~GLl~~i~~~L~~~glnI~ 70 (343)
..|.++|.. ++|+.+++..+|...|++++
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~ 33 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPI 33 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEE
Confidence 467777742 68999999999999999998
No 359
>PRK00907 hypothetical protein; Provisional
Probab=21.82 E-value=3.8e+02 Score=20.73 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=45.4
Q ss_pred cccCCCCCCCEEEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEe--cCCCEE-EEEEEEecCCCcccchhHHHHHHHH
Q 019269 31 FFSFSPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST--TPDGKV-MDLFFVTDTRELLHTRKRKEDTYEH 107 (343)
Q Consensus 31 ~~~~~~~~~~~~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T--~~~g~~-~d~f~V~~~~g~~~~~~~~~~l~~~ 107 (343)
.+|.|+. +-|.|.|.+.+++...|..++..+.-..-...+.. +.+|.. --.+.|... +.++++.|-+.
T Consensus 11 liEFPc~----fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at-----s~eQld~iY~~ 81 (92)
T PRK00907 11 GFQFPGT----FELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE-----SREQYDAAHQA 81 (92)
T ss_pred cEecCCC----CeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC-----CHHHHHHHHHH
Confidence 4666662 78999999999999999999999887665555532 234543 333444321 24455555544
Q ss_pred HHH
Q 019269 108 LKT 110 (343)
Q Consensus 108 L~~ 110 (343)
|.+
T Consensus 82 L~~ 84 (92)
T PRK00907 82 LRD 84 (92)
T ss_pred Hhh
Confidence 433
No 360
>PRK00630 nickel responsive regulator; Provisional
Probab=20.75 E-value=5.2e+02 Score=21.86 Aligned_cols=63 Identities=5% Similarity=-0.043 Sum_probs=43.3
Q ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEEEEecCCCcccchhHHHHHHHHHHH
Q 019269 42 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 110 (343)
Q Consensus 42 ~~I~V~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~g~~~~~~~~~~l~~~L~~ 110 (343)
++..||=.+..++-.+++.+-.++.=.|.+..=.-+.+..++.++.|..+ ..+++.|.+.|..
T Consensus 67 ~itvvYdH~~~~l~~~l~~iqH~~~d~Iist~HvHld~~~CLEvivv~G~------~~~I~~la~~l~~ 129 (148)
T PRK00630 67 VLVVIYDHHQRELNQRMIDIQHASGTHILCTTHIHMDHHNCLETIILRGN------SFEIQRLQLEIGG 129 (148)
T ss_pred EEEEEEeCCcchHHHHHHHHHHhhhceEEEEEEEecCCCCEEEEEEEEcC------HHHHHHHHHHHHh
Confidence 34445556677999999999888855555433333456779999999752 5567777777764
No 361
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=20.71 E-value=70 Score=25.03 Aligned_cols=44 Identities=9% Similarity=0.100 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHhCCceEEEEEeec-cccCceEeeeeEEEEEcCCCCCCC
Q 019269 280 LVFHDITLALKMLDICIFSAEIGR-HMIGDREWEVYRVLLDEGDGLSVP 327 (343)
Q Consensus 280 GLL~~I~~~l~~~gi~I~~AkI~~-~T~g~~~~dv~~F~v~~~~g~~l~ 327 (343)
-=|.++.+.|.+.|+.|....... ...| .... ||+.||+|..++
T Consensus 69 ~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~--~~~~--~~~~DPdG~~iE 113 (120)
T cd07252 69 AALDALAARLRAAGVAVEEGSAELAAERG--VEGL--IRFADPDGNRHE 113 (120)
T ss_pred HHHHHHHHHHHHcCCeEEEcCHHHHhhCC--CcEE--EEEECCCCCEEE
Confidence 346667888899999987643210 0112 2235 899999999774
No 362
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=20.02 E-value=2.4e+02 Score=21.27 Aligned_cols=47 Identities=11% Similarity=0.038 Sum_probs=29.8
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEeeccccCceEeeeeEEEEEcCCCCCCC
Q 019269 271 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 327 (343)
Q Consensus 271 ieV~~~DrpGLL~~I~~~l~~~gi~I~~AkI~~~T~g~~~~dv~~F~v~~~~g~~l~ 327 (343)
+.+...| +.++.+.|.+.|+.+..-... ...|. +.||+.|++|..+.
T Consensus 61 i~~~v~d----~~~~~~~l~~~G~~~~~~~~~-~~~g~-----~~~~~~DP~Gn~i~ 107 (112)
T cd07238 61 LSIEVDD----VDAALARAVAAGFAIVYGPTD-EPWGV-----RRFFVRDPFGKLVN 107 (112)
T ss_pred EEEEeCC----HHHHHHHHHhcCCeEecCCcc-CCCce-----EEEEEECCCCCEEE
Confidence 3444455 556778889999998653322 01121 23999999998764
Done!