Query 019272
Match_columns 343
No_of_seqs 199 out of 1515
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:06:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 7.5E-70 1.6E-74 501.4 34.0 305 5-314 1-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 3.2E-68 6.8E-73 480.9 32.2 316 4-323 11-335 (336)
3 TIGR01293 Kv_beta voltage-depe 100.0 6.3E-63 1.4E-67 458.7 32.3 298 7-311 1-316 (317)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 1.8E-62 4E-67 460.2 33.1 306 4-314 12-334 (346)
5 PRK10625 tas putative aldo-ket 100.0 4.6E-62 9.9E-67 458.2 33.4 304 5-313 1-339 (346)
6 COG0656 ARA1 Aldo/keto reducta 100.0 1.5E-62 3.3E-67 436.3 26.4 258 4-315 2-266 (280)
7 PLN02587 L-galactose dehydroge 100.0 8.1E-60 1.8E-64 437.4 31.7 286 7-313 1-300 (314)
8 PRK10376 putative oxidoreducta 100.0 1.9E-58 4.2E-63 423.3 31.3 281 1-314 1-289 (290)
9 cd06660 Aldo_ket_red Aldo-keto 100.0 2.8E-58 6E-63 422.1 31.5 280 7-310 1-284 (285)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 2E-57 4.4E-62 416.0 25.6 277 19-312 1-282 (283)
11 KOG1577 Aldo/keto reductase fa 100.0 1.9E-57 4E-62 403.6 24.4 264 1-316 1-288 (300)
12 PRK11172 dkgB 2,5-diketo-D-glu 100.0 4.1E-56 8.8E-61 403.2 28.7 246 15-314 1-253 (267)
13 PRK14863 bifunctional regulato 100.0 1.1E-55 2.4E-60 404.3 23.9 268 14-310 2-279 (292)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 3.3E-54 7.1E-59 392.0 27.9 254 7-315 6-264 (275)
15 COG4989 Predicted oxidoreducta 100.0 1.8E-54 3.9E-59 368.5 23.4 284 5-314 1-294 (298)
16 KOG1576 Predicted oxidoreducta 100.0 1.4E-52 3E-57 359.4 23.0 294 3-313 20-321 (342)
17 COG1453 Predicted oxidoreducta 100.0 2.2E-50 4.9E-55 361.7 24.5 273 5-314 1-286 (391)
18 KOG3023 Glutamate-cysteine lig 97.9 3.2E-05 6.9E-10 66.8 6.2 71 136-207 155-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 93.9 2.8 6.1E-05 38.8 15.0 155 36-211 134-290 (316)
20 cd03316 MR_like Mandelate race 88.1 22 0.00047 33.4 14.8 153 36-208 139-299 (357)
21 COG1748 LYS9 Saccharopine dehy 85.6 3.8 8.3E-05 39.1 8.0 81 38-133 79-159 (389)
22 PRK10550 tRNA-dihydrouridine s 83.5 22 0.00048 32.9 11.9 132 36-179 73-223 (312)
23 PRK07945 hypothetical protein; 82.9 28 0.00061 32.6 12.5 150 38-203 111-287 (335)
24 cd03315 MLE_like Muconate lact 81.7 39 0.00084 30.3 15.5 157 36-212 85-243 (265)
25 cd04740 DHOD_1B_like Dihydroor 80.8 45 0.00097 30.4 13.4 153 36-201 100-286 (296)
26 cd03174 DRE_TIM_metallolyase D 79.9 14 0.00031 32.9 9.2 106 100-207 15-135 (265)
27 cd00739 DHPS DHPS subgroup of 79.9 41 0.00088 30.2 12.0 101 101-207 21-127 (257)
28 PRK07535 methyltetrahydrofolat 78.7 37 0.00081 30.6 11.4 133 102-265 23-157 (261)
29 PRK08392 hypothetical protein; 77.6 47 0.001 28.8 12.8 148 39-204 15-178 (215)
30 PRK08609 hypothetical protein; 75.6 25 0.00053 35.6 10.2 148 40-203 351-521 (570)
31 cd00423 Pterin_binding Pterin 75.2 62 0.0013 29.0 12.7 103 101-209 21-129 (258)
32 PRK13958 N-(5'-phosphoribosyl) 74.8 8.4 0.00018 33.4 5.9 67 113-181 16-83 (207)
33 PF07021 MetW: Methionine bios 72.9 19 0.00042 30.8 7.4 150 42-213 5-172 (193)
34 COG1140 NarY Nitrate reductase 71.4 2.2 4.7E-05 40.0 1.4 54 149-202 263-317 (513)
35 cd03323 D-glucarate_dehydratas 71.1 1E+02 0.0022 29.6 14.9 150 36-209 168-321 (395)
36 PRK00164 moaA molybdenum cofac 70.2 92 0.002 28.9 13.4 152 35-206 49-229 (331)
37 PRK10558 alpha-dehydro-beta-de 70.2 35 0.00075 30.7 8.9 67 142-209 9-78 (256)
38 cd00308 enolase_like Enolase-s 67.6 49 0.0011 28.9 9.3 87 122-212 120-208 (229)
39 PRK01222 N-(5'-phosphoribosyl) 67.0 14 0.0003 32.1 5.5 67 114-182 19-86 (210)
40 PF05913 DUF871: Bacterial pro 66.1 28 0.0006 33.0 7.7 211 36-295 12-235 (357)
41 PRK00730 rnpA ribonuclease P; 65.6 35 0.00076 27.5 7.1 63 78-149 46-110 (138)
42 TIGR00735 hisF imidazoleglycer 65.6 51 0.0011 29.4 9.1 92 109-203 159-253 (254)
43 PRK10128 2-keto-3-deoxy-L-rham 64.8 58 0.0013 29.5 9.2 64 143-208 9-76 (267)
44 cd00740 MeTr MeTr subgroup of 63.5 1.1E+02 0.0024 27.3 12.0 105 100-209 22-128 (252)
45 TIGR02370 pyl_corrinoid methyl 63.3 96 0.0021 26.5 10.9 145 36-201 10-164 (197)
46 PRK13796 GTPase YqeH; Provisio 63.0 1.4E+02 0.003 28.3 12.9 136 19-166 35-177 (365)
47 cd03322 rpsA The starvation se 62.6 1.4E+02 0.003 28.2 15.0 147 36-209 126-274 (361)
48 COG0135 TrpF Phosphoribosylant 61.8 44 0.00096 29.0 7.6 83 114-205 18-103 (208)
49 TIGR00190 thiC thiamine biosyn 60.1 1.7E+02 0.0036 28.2 12.0 143 36-205 75-221 (423)
50 cd02070 corrinoid_protein_B12- 59.9 1.1E+02 0.0024 26.1 11.0 151 36-207 9-172 (201)
51 COG2355 Zn-dependent dipeptida 59.6 57 0.0012 30.2 8.2 107 38-159 149-260 (313)
52 PRK04452 acetyl-CoA decarbonyl 59.5 1.5E+02 0.0033 27.6 12.3 95 112-209 83-184 (319)
53 TIGR03239 GarL 2-dehydro-3-deo 59.4 66 0.0014 28.8 8.5 64 144-209 4-71 (249)
54 TIGR01928 menC_lowGC/arch o-su 59.2 1.5E+02 0.0033 27.5 14.8 153 36-212 132-286 (324)
55 cd04731 HisF The cyclase subun 59.1 93 0.002 27.4 9.6 145 36-199 82-243 (243)
56 PRK15072 bifunctional D-altron 58.8 67 0.0015 30.9 9.1 83 123-209 233-317 (404)
57 COG0218 Predicted GTPase [Gene 58.6 1.2E+02 0.0026 26.1 10.2 116 17-149 75-198 (200)
58 TIGR02026 BchE magnesium-proto 57.7 93 0.002 30.9 10.1 68 132-201 318-392 (497)
59 TIGR01502 B_methylAsp_ase meth 57.5 71 0.0015 30.9 8.9 86 123-209 265-357 (408)
60 TIGR00126 deoC deoxyribose-pho 57.3 1.3E+02 0.0028 26.1 9.9 101 34-149 14-114 (211)
61 PF00682 HMGL-like: HMGL-like 56.2 91 0.002 27.2 9.0 162 35-211 11-194 (237)
62 cd03321 mandelate_racemase Man 56.1 1.8E+02 0.0039 27.3 13.0 150 37-205 142-293 (355)
63 TIGR00381 cdhD CO dehydrogenas 56.0 1.7E+02 0.0037 28.0 10.8 105 104-213 128-253 (389)
64 cd07943 DRE_TIM_HOA 4-hydroxy- 56.0 98 0.0021 27.7 9.2 105 100-206 18-131 (263)
65 PRK07259 dihydroorotate dehydr 55.9 1.6E+02 0.0035 26.8 11.9 153 36-201 102-289 (301)
66 cd07944 DRE_TIM_HOA_like 4-hyd 55.2 1.5E+02 0.0032 26.7 10.2 106 99-206 15-128 (266)
67 PLN02389 biotin synthase 54.5 1.9E+02 0.004 27.7 11.2 101 35-151 116-227 (379)
68 PRK13803 bifunctional phosphor 54.5 60 0.0013 33.2 8.3 68 115-182 20-88 (610)
69 COG1801 Uncharacterized conser 54.1 1.7E+02 0.0037 26.4 11.2 109 19-134 4-116 (263)
70 smart00642 Aamy Alpha-amylase 53.7 23 0.00049 29.5 4.3 22 190-211 73-94 (166)
71 cd03318 MLE Muconate Lactonizi 53.5 2E+02 0.0043 27.1 14.2 153 38-210 144-300 (365)
72 PRK06424 transcription factor; 53.3 66 0.0014 26.2 6.8 81 189-270 22-108 (144)
73 cd02930 DCR_FMN 2,4-dienoyl-Co 53.1 2E+02 0.0043 27.0 13.7 97 79-179 202-305 (353)
74 PRK14017 galactonate dehydrata 53.1 70 0.0015 30.5 8.2 69 140-208 217-287 (382)
75 TIGR02534 mucon_cyclo muconate 53.0 39 0.00085 32.0 6.4 72 140-211 227-300 (368)
76 PF13378 MR_MLE_C: Enolase C-t 53.0 23 0.0005 26.9 4.0 53 158-211 3-56 (111)
77 COG1751 Uncharacterized conser 52.5 52 0.0011 27.0 5.9 73 35-119 11-84 (186)
78 PRK02083 imidazole glycerol ph 52.1 1.7E+02 0.0037 25.9 10.3 88 113-203 161-251 (253)
79 cd03314 MAL Methylaspartate am 51.8 1.1E+02 0.0023 29.2 9.0 84 125-208 230-320 (369)
80 PRK13352 thiamine biosynthesis 51.4 2.3E+02 0.0051 27.3 12.0 89 99-207 138-226 (431)
81 PRK05406 LamB/YcsF family prot 51.3 63 0.0014 28.8 6.8 81 21-118 13-96 (246)
82 PRK10415 tRNA-dihydrouridine s 51.0 2.1E+02 0.0045 26.6 11.8 134 36-180 75-224 (321)
83 COG0635 HemN Coproporphyrinoge 50.9 99 0.0022 30.0 8.8 60 101-162 201-276 (416)
84 TIGR00126 deoC deoxyribose-pho 50.8 1.1E+02 0.0023 26.7 8.2 72 36-121 130-205 (211)
85 TIGR01228 hutU urocanate hydra 50.8 37 0.00081 33.3 5.7 124 44-181 109-258 (545)
86 TIGR03247 glucar-dehydr glucar 50.5 2.5E+02 0.0055 27.4 14.5 86 124-209 252-338 (441)
87 COG1151 6Fe-6S prismane cluste 50.3 79 0.0017 31.6 7.9 95 104-203 360-463 (576)
88 PRK05692 hydroxymethylglutaryl 50.0 2E+02 0.0044 26.2 11.3 104 100-206 22-139 (287)
89 PRK05414 urocanate hydratase; 49.9 40 0.00086 33.2 5.8 114 44-171 118-254 (556)
90 TIGR00676 fadh2 5,10-methylene 49.6 2E+02 0.0043 26.0 16.6 150 38-203 15-186 (272)
91 COG0761 lytB 4-Hydroxy-3-methy 49.1 2.1E+02 0.0046 26.1 11.2 69 189-293 203-277 (294)
92 PRK09856 fructoselysine 3-epim 48.6 2E+02 0.0043 25.6 11.7 52 190-261 93-144 (275)
93 PRK12569 hypothetical protein; 48.5 78 0.0017 28.2 7.0 81 21-118 14-99 (245)
94 cd00405 PRAI Phosphoribosylant 47.9 1.3E+02 0.0029 25.6 8.4 46 112-164 67-112 (203)
95 cd02810 DHOD_DHPD_FMN Dihydroo 47.5 2.2E+02 0.0047 25.7 12.3 130 36-179 109-271 (289)
96 PF03102 NeuB: NeuB family; I 47.4 1.1E+02 0.0024 27.2 7.9 108 35-162 53-182 (241)
97 PF00682 HMGL-like: HMGL-like 47.4 1.9E+02 0.0042 25.1 10.4 98 100-203 10-124 (237)
98 TIGR02311 HpaI 2,4-dihydroxyhe 47.3 2.1E+02 0.0045 25.5 10.1 65 143-208 3-70 (249)
99 COG1168 MalY Bifunctional PLP- 47.3 2E+02 0.0042 27.5 9.7 46 161-207 146-198 (388)
100 PRK07379 coproporphyrinogen II 47.2 1.1E+02 0.0024 29.4 8.6 60 101-162 179-255 (400)
101 PF11242 DUF2774: Protein of u 46.9 29 0.00062 23.7 3.1 22 250-271 15-36 (63)
102 PRK02901 O-succinylbenzoate sy 46.1 2.5E+02 0.0055 26.2 11.5 71 140-212 173-244 (327)
103 PRK05588 histidinol-phosphatas 46.1 1.6E+02 0.0035 26.1 9.0 79 38-131 16-103 (255)
104 PRK09613 thiH thiamine biosynt 45.9 3E+02 0.0066 27.2 11.3 172 36-209 29-241 (469)
105 PF04476 DUF556: Protein of un 45.7 2.2E+02 0.0047 25.3 10.1 145 45-203 14-183 (235)
106 cd00945 Aldolase_Class_I Class 45.7 1.7E+02 0.0038 24.2 9.3 98 36-149 11-109 (201)
107 PRK05660 HemN family oxidoredu 45.6 1.3E+02 0.0029 28.6 8.8 61 100-162 170-243 (378)
108 COG4130 Predicted sugar epimer 45.6 1.5E+02 0.0032 26.0 7.9 80 161-260 50-136 (272)
109 PF05690 ThiG: Thiazole biosyn 45.4 1.4E+02 0.0031 26.4 8.0 112 18-152 9-125 (247)
110 COG2069 CdhD CO dehydrogenase/ 45.2 2.5E+02 0.0054 25.9 9.6 97 110-211 156-262 (403)
111 PRK09058 coproporphyrinogen II 44.9 1.5E+02 0.0032 29.0 9.2 29 100-129 226-254 (449)
112 PF14871 GHL6: Hypothetical gl 44.8 37 0.00079 27.2 4.1 25 186-210 43-67 (132)
113 cd03325 D-galactonate_dehydrat 44.6 2.7E+02 0.0059 26.1 16.0 153 36-207 123-285 (352)
114 PRK06294 coproporphyrinogen II 44.3 1.5E+02 0.0032 28.2 8.8 61 100-162 166-243 (370)
115 cd07943 DRE_TIM_HOA 4-hydroxy- 44.3 2.3E+02 0.0051 25.3 15.3 113 35-167 19-145 (263)
116 cd07948 DRE_TIM_HCS Saccharomy 43.8 2.4E+02 0.0053 25.3 10.8 103 36-157 20-132 (262)
117 COG1121 ZnuC ABC-type Mn/Zn tr 43.3 1.2E+02 0.0027 27.2 7.5 66 102-170 113-207 (254)
118 PRK09061 D-glutamate deacylase 43.2 2.2E+02 0.0047 28.4 10.1 113 39-158 170-283 (509)
119 PLN02363 phosphoribosylanthran 42.6 72 0.0016 28.7 6.0 74 102-181 56-130 (256)
120 cd02932 OYE_YqiM_FMN Old yello 42.4 2.9E+02 0.0062 25.7 13.4 95 78-179 218-319 (336)
121 PF00809 Pterin_bind: Pterin b 42.2 74 0.0016 27.5 5.9 90 114-209 28-125 (210)
122 PRK06361 hypothetical protein; 42.0 2.2E+02 0.0048 24.3 18.6 184 39-270 11-201 (212)
123 cd03329 MR_like_4 Mandelate ra 41.8 3.1E+02 0.0067 25.9 15.2 152 36-207 143-299 (368)
124 PF01175 Urocanase: Urocanase; 41.7 69 0.0015 31.6 6.0 125 43-181 107-257 (546)
125 COG0502 BioB Biotin synthase a 41.7 1.3E+02 0.0029 28.1 7.7 133 35-186 84-233 (335)
126 PRK09427 bifunctional indole-3 41.4 61 0.0013 31.8 5.8 65 114-182 273-338 (454)
127 TIGR01496 DHPS dihydropteroate 41.3 2.6E+02 0.0057 25.0 13.6 99 101-207 20-125 (257)
128 COG2102 Predicted ATPases of P 40.4 98 0.0021 27.1 6.2 123 109-263 50-177 (223)
129 PRK05283 deoxyribose-phosphate 40.4 1.5E+02 0.0032 26.7 7.6 77 37-123 146-227 (257)
130 TIGR01927 menC_gamma/gm+ o-suc 40.2 2.3E+02 0.0049 26.1 9.2 72 141-212 196-269 (307)
131 cd02933 OYE_like_FMN Old yello 40.1 3.2E+02 0.0069 25.6 13.8 24 35-58 142-172 (338)
132 COG2987 HutU Urocanate hydrata 40.1 54 0.0012 31.8 4.9 104 64-181 148-267 (561)
133 KOG0369 Pyruvate carboxylase [ 40.0 2.2E+02 0.0048 29.4 9.2 145 38-212 43-196 (1176)
134 PRK12581 oxaloacetate decarbox 39.8 3.8E+02 0.0083 26.4 14.4 112 36-161 103-215 (468)
135 COG3623 SgaU Putative L-xylulo 38.8 51 0.0011 29.1 4.2 76 12-88 65-155 (287)
136 PRK08446 coproporphyrinogen II 38.6 3.2E+02 0.0069 25.6 10.1 61 100-162 161-231 (350)
137 PRK09856 fructoselysine 3-epim 38.2 2.3E+02 0.005 25.2 8.8 52 161-212 14-72 (275)
138 PRK00507 deoxyribose-phosphate 38.2 1.8E+02 0.0038 25.5 7.7 74 36-120 134-208 (221)
139 TIGR03822 AblA_like_2 lysine-2 38.1 3.3E+02 0.0072 25.2 12.1 102 36-151 120-228 (321)
140 cd03317 NAAAR N-acylamino acid 38.0 3.4E+02 0.0074 25.3 14.7 148 38-209 139-288 (354)
141 cd08583 PI-PLCc_GDPD_SF_unchar 37.8 2.8E+02 0.006 24.2 9.2 21 37-57 14-34 (237)
142 COG4555 NatA ABC-type Na+ tran 37.6 1.6E+02 0.0034 25.9 6.9 70 100-171 104-202 (245)
143 TIGR03471 HpnJ hopanoid biosyn 36.9 2.7E+02 0.0058 27.3 9.6 67 134-202 320-393 (472)
144 PLN02746 hydroxymethylglutaryl 36.6 1.2E+02 0.0026 28.7 6.7 100 100-206 64-181 (347)
145 PHA02128 hypothetical protein 36.3 1.2E+02 0.0027 23.1 5.4 70 137-206 60-150 (151)
146 PRK12928 lipoyl synthase; Prov 35.7 3E+02 0.0065 25.2 9.1 161 35-209 87-280 (290)
147 PRK14457 ribosomal RNA large s 35.6 3.8E+02 0.0083 25.2 14.9 164 35-211 129-330 (345)
148 PF07994 NAD_binding_5: Myo-in 35.4 2.1E+02 0.0046 26.3 8.0 146 103-290 131-284 (295)
149 PF11020 DUF2610: Domain of un 35.3 95 0.0021 22.4 4.4 28 242-269 48-75 (82)
150 cd03327 MR_like_2 Mandelate ra 35.0 3.8E+02 0.0082 25.0 15.7 152 36-207 120-280 (341)
151 TIGR03597 GTPase_YqeH ribosome 34.9 3.5E+02 0.0075 25.6 9.7 136 18-165 28-170 (360)
152 cd01297 D-aminoacylase D-amino 34.1 4.3E+02 0.0093 25.3 11.3 103 38-151 167-275 (415)
153 PRK13347 coproporphyrinogen II 34.0 1.8E+02 0.0039 28.4 7.8 61 100-162 215-291 (453)
154 TIGR00048 radical SAM enzyme, 34.0 1.3E+02 0.0029 28.4 6.7 88 124-211 218-333 (355)
155 KOG0059 Lipid exporter ABCA1 a 33.8 2.2E+02 0.0048 30.6 9.0 73 100-174 669-770 (885)
156 PF00356 LacI: Bacterial regul 33.8 56 0.0012 20.8 2.8 42 251-298 2-43 (46)
157 COG4152 ABC-type uncharacteriz 33.5 3.4E+02 0.0074 24.6 8.5 70 100-171 101-199 (300)
158 TIGR00216 ispH_lytB (E)-4-hydr 33.4 3.8E+02 0.0082 24.5 10.3 44 249-293 224-273 (280)
159 PF14502 HTH_41: Helix-turn-he 33.4 45 0.00097 21.6 2.3 29 249-277 7-37 (48)
160 smart00052 EAL Putative diguan 33.4 2.4E+02 0.0051 24.1 7.9 99 106-208 101-211 (241)
161 PRK14461 ribosomal RNA large s 33.3 2.2E+02 0.0048 27.2 7.9 88 124-211 231-352 (371)
162 PF01118 Semialdhyde_dh: Semia 33.2 63 0.0014 25.0 3.8 28 36-63 75-102 (121)
163 COG0135 TrpF Phosphoribosylant 33.0 60 0.0013 28.2 3.8 99 36-160 11-110 (208)
164 TIGR01378 thi_PPkinase thiamin 32.9 1.7E+02 0.0036 25.2 6.6 37 260-296 72-110 (203)
165 PLN00191 enolase 32.5 3.8E+02 0.0082 26.4 9.7 97 101-206 295-394 (457)
166 cd02801 DUS_like_FMN Dihydrour 32.3 3.3E+02 0.0071 23.4 9.4 131 36-179 65-212 (231)
167 PRK08255 salicylyl-CoA 5-hydro 32.0 6.3E+02 0.014 26.6 13.7 157 35-202 541-737 (765)
168 PRK00208 thiG thiazole synthas 32.0 3.8E+02 0.0082 24.0 14.2 105 100-206 72-181 (250)
169 PF10171 DUF2366: Uncharacteri 31.9 91 0.002 26.2 4.6 49 107-158 66-114 (173)
170 PF02679 ComA: (2R)-phospho-3- 31.8 44 0.00095 29.8 2.8 98 107-205 24-131 (244)
171 TIGR02026 BchE magnesium-proto 31.8 5.2E+02 0.011 25.6 11.9 103 101-207 222-343 (497)
172 TIGR00035 asp_race aspartate r 31.7 2.6E+02 0.0056 24.4 7.8 68 102-170 15-95 (229)
173 cd07939 DRE_TIM_NifV Streptomy 31.2 3.8E+02 0.0082 23.8 11.8 116 88-211 4-134 (259)
174 TIGR03849 arch_ComA phosphosul 31.2 1.3E+02 0.0028 26.7 5.6 97 107-205 11-118 (237)
175 COG2256 MGS1 ATPase related to 31.1 2.4E+02 0.0053 27.2 7.7 102 42-161 37-142 (436)
176 TIGR03822 AblA_like_2 lysine-2 31.1 4.3E+02 0.0094 24.5 12.5 109 102-213 120-240 (321)
177 PRK15108 biotin synthase; Prov 31.0 4.5E+02 0.0098 24.6 10.8 137 35-186 76-226 (345)
178 PRK05628 coproporphyrinogen II 30.7 3.2E+02 0.0069 25.9 8.8 28 100-128 171-198 (375)
179 COG3215 PilZ Tfp pilus assembl 30.6 1.9E+02 0.0042 22.0 5.6 79 36-116 18-106 (117)
180 PRK13753 dihydropteroate synth 30.6 4.2E+02 0.0091 24.2 12.5 102 101-210 22-129 (279)
181 TIGR01290 nifB nitrogenase cof 30.6 5.2E+02 0.011 25.2 10.4 109 99-212 58-199 (442)
182 PLN02540 methylenetetrahydrofo 30.0 6E+02 0.013 25.8 16.9 153 37-205 14-202 (565)
183 PF01904 DUF72: Protein of unk 30.0 3.8E+02 0.0082 23.4 11.1 135 44-205 12-147 (230)
184 PF01402 RHH_1: Ribbon-helix-h 29.8 1.3E+02 0.0027 17.9 4.2 21 246-266 9-29 (39)
185 cd01301 rDP_like renal dipepti 29.7 3E+02 0.0066 25.4 8.2 107 38-159 154-263 (309)
186 PRK00077 eno enolase; Provisio 29.7 4.6E+02 0.01 25.4 9.8 96 101-205 261-361 (425)
187 COG2861 Uncharacterized protei 29.6 4.1E+02 0.0089 23.7 10.7 40 123-163 78-131 (250)
188 PRK12331 oxaloacetate decarbox 29.2 3.1E+02 0.0067 26.9 8.4 102 100-205 22-141 (448)
189 PRK06740 histidinol-phosphatas 29.1 4.8E+02 0.01 24.3 11.2 24 37-60 60-83 (331)
190 cd01075 NAD_bind_Leu_Phe_Val_D 29.1 1.8E+02 0.0038 24.9 6.2 73 191-272 123-196 (200)
191 PF05368 NmrA: NmrA-like famil 28.8 2.6E+02 0.0056 24.0 7.3 94 108-212 12-106 (233)
192 PRK08599 coproporphyrinogen II 28.4 3.2E+02 0.007 25.8 8.4 61 100-162 163-240 (377)
193 cd00408 DHDPS-like Dihydrodipi 28.3 4.3E+02 0.0094 23.6 16.4 120 35-170 15-149 (281)
194 COG2159 Predicted metal-depend 28.1 3E+02 0.0066 25.1 7.8 95 114-210 55-167 (293)
195 PRK11815 tRNA-dihydrouridine s 28.1 5E+02 0.011 24.2 10.9 132 36-179 75-232 (333)
196 PRK08208 coproporphyrinogen II 28.0 3.3E+02 0.0071 26.4 8.5 62 100-163 204-276 (430)
197 PRK08195 4-hyroxy-2-oxovalerat 27.8 5.1E+02 0.011 24.2 12.0 104 99-206 20-134 (337)
198 TIGR02082 metH 5-methyltetrahy 27.8 9E+02 0.02 27.1 13.7 102 102-208 366-472 (1178)
199 PRK10605 N-ethylmaleimide redu 27.5 5.3E+02 0.012 24.4 14.5 93 83-178 227-319 (362)
200 PRK09413 IS2 repressor TnpA; R 27.4 71 0.0015 24.9 3.1 41 35-77 13-53 (121)
201 COG0145 HyuA N-methylhydantoin 27.4 6.4E+02 0.014 26.3 10.6 99 35-135 136-246 (674)
202 PRK05799 coproporphyrinogen II 27.1 4.1E+02 0.009 25.0 8.9 28 100-128 162-189 (374)
203 TIGR00737 nifR3_yhdG putative 27.1 5E+02 0.011 23.9 11.7 136 36-182 73-224 (319)
204 PRK15440 L-rhamnonate dehydrat 27.0 2E+02 0.0044 27.6 6.7 68 139-206 247-318 (394)
205 cd01948 EAL EAL domain. This d 27.0 3.9E+02 0.0085 22.7 8.4 102 104-208 98-210 (240)
206 cd00248 Mth938-like Mth938-lik 26.8 1.5E+02 0.0033 22.6 4.8 53 157-209 36-88 (109)
207 PRK08195 4-hyroxy-2-oxovalerat 26.8 5.3E+02 0.012 24.1 16.5 24 35-58 22-45 (337)
208 cd03320 OSBS o-Succinylbenzoat 26.7 2.9E+02 0.0063 24.6 7.4 84 123-211 154-238 (263)
209 PRK13361 molybdenum cofactor b 26.7 5.1E+02 0.011 23.9 13.8 95 35-151 45-154 (329)
210 PRK00912 ribonuclease P protei 26.7 4.3E+02 0.0094 23.1 13.1 141 37-206 15-173 (237)
211 cd07937 DRE_TIM_PC_TC_5S Pyruv 26.6 4.8E+02 0.01 23.5 15.4 124 35-168 18-154 (275)
212 cd02803 OYE_like_FMN_family Ol 26.5 5E+02 0.011 23.8 12.9 94 79-179 206-310 (327)
213 cd07937 DRE_TIM_PC_TC_5S Pyruv 26.5 3.2E+02 0.0069 24.7 7.6 101 100-205 17-136 (275)
214 PRK09249 coproporphyrinogen II 26.4 4E+02 0.0087 26.0 8.8 15 201-215 317-331 (453)
215 PRK07094 biotin synthase; Prov 26.4 3.6E+02 0.0079 24.7 8.2 21 36-56 71-91 (323)
216 PTZ00413 lipoate synthase; Pro 26.2 5.9E+02 0.013 24.5 10.4 159 35-211 177-373 (398)
217 cd08556 GDPD Glycerophosphodie 26.2 3.5E+02 0.0077 22.1 7.5 147 37-208 12-168 (189)
218 TIGR02660 nifV_homocitr homoci 26.2 5.6E+02 0.012 24.2 9.5 97 100-204 19-130 (365)
219 COG0042 tRNA-dihydrouridine sy 26.0 5.3E+02 0.011 24.0 9.1 132 36-179 77-227 (323)
220 PF09989 DUF2229: CoA enzyme a 26.0 1.9E+02 0.004 25.3 5.8 33 174-206 186-218 (221)
221 cd08562 GDPD_EcUgpQ_like Glyce 26.0 4.1E+02 0.0089 22.7 8.1 19 190-208 189-207 (229)
222 TIGR00742 yjbN tRNA dihydrouri 26.0 5.4E+02 0.012 23.9 12.1 133 36-179 65-222 (318)
223 cd01974 Nitrogenase_MoFe_beta 26.0 4.4E+02 0.0095 25.6 9.0 108 58-177 64-191 (435)
224 COG0820 Predicted Fe-S-cluster 25.9 3.9E+02 0.0084 25.3 8.0 93 78-170 99-207 (349)
225 PRK07328 histidinol-phosphatas 25.7 4.8E+02 0.01 23.3 13.7 105 40-157 20-160 (269)
226 PRK01903 rnpA ribonuclease P; 25.5 3.4E+02 0.0074 21.6 6.7 48 101-148 65-128 (133)
227 cd04742 NPD_FabD 2-Nitropropan 25.5 2.6E+02 0.0056 27.1 7.1 87 114-207 7-102 (418)
228 TIGR03217 4OH_2_O_val_ald 4-hy 25.1 5.7E+02 0.012 23.9 12.1 104 99-205 19-132 (333)
229 cd00019 AP2Ec AP endonuclease 25.0 4.1E+02 0.0089 23.6 8.1 17 190-206 88-104 (279)
230 TIGR03070 couple_hipB transcri 24.9 94 0.002 19.8 3.0 20 250-269 6-25 (58)
231 cd01320 ADA Adenosine deaminas 24.7 3.9E+02 0.0084 24.5 8.1 105 101-206 66-192 (325)
232 PRK01313 rnpA ribonuclease P; 24.7 3.6E+02 0.0078 21.4 6.9 62 78-148 47-113 (129)
233 PRK06015 keto-hydroxyglutarate 24.4 2.2E+02 0.0048 24.6 5.8 87 102-205 14-102 (201)
234 cd08570 GDPD_YPL206cp_fungi Gl 24.3 4.7E+02 0.01 22.7 8.4 21 37-57 12-32 (234)
235 TIGR01060 eno phosphopyruvate 24.3 6.6E+02 0.014 24.3 10.1 96 101-205 262-362 (425)
236 TIGR02631 xylA_Arthro xylose i 24.1 6.3E+02 0.014 24.1 9.4 59 18-76 7-79 (382)
237 PF07287 DUF1446: Protein of u 24.0 2.9E+02 0.0062 26.3 6.9 19 189-207 60-78 (362)
238 TIGR02351 thiH thiazole biosyn 24.0 6.2E+02 0.013 23.9 9.5 101 35-151 103-215 (366)
239 cd00959 DeoC 2-deoxyribose-5-p 23.9 4.6E+02 0.0099 22.3 7.9 69 36-120 129-203 (203)
240 PRK09240 thiH thiamine biosynt 23.7 6.3E+02 0.014 23.9 11.8 100 35-151 104-216 (371)
241 COG4464 CapC Capsular polysacc 23.6 5.1E+02 0.011 22.8 10.0 30 35-64 17-46 (254)
242 PF02525 Flavodoxin_2: Flavodo 23.5 4.3E+02 0.0093 22.2 7.6 101 37-147 94-196 (199)
243 TIGR00538 hemN oxygen-independ 23.5 5.2E+02 0.011 25.2 9.0 25 102-127 216-240 (455)
244 PF13407 Peripla_BP_4: Peripla 23.3 3.3E+02 0.0071 23.5 7.0 50 104-159 14-63 (257)
245 COG0274 DeoC Deoxyribose-phosp 23.0 5.3E+02 0.011 22.8 8.0 85 17-120 127-212 (228)
246 PRK02714 O-succinylbenzoate sy 23.0 6E+02 0.013 23.4 15.4 85 122-212 192-277 (320)
247 PRK05283 deoxyribose-phosphate 22.9 5.6E+02 0.012 23.0 9.3 143 34-207 22-167 (257)
248 PLN02428 lipoic acid synthase 22.8 6.5E+02 0.014 23.8 9.0 157 36-211 131-325 (349)
249 cd07948 DRE_TIM_HCS Saccharomy 22.6 5.6E+02 0.012 22.9 10.0 100 100-207 18-132 (262)
250 PF14606 Lipase_GDSL_3: GDSL-l 22.6 4.2E+02 0.0092 22.4 7.0 109 14-131 33-146 (178)
251 PF01207 Dus: Dihydrouridine s 22.5 2.1E+02 0.0046 26.3 5.8 133 36-179 64-212 (309)
252 PF10668 Phage_terminase: Phag 22.5 1.6E+02 0.0034 20.1 3.6 17 250-266 24-40 (60)
253 KOG2264 Exostosin EXT1L [Signa 22.4 2.2E+02 0.0048 28.6 5.9 59 64-137 632-692 (907)
254 KOG0259 Tyrosine aminotransfer 22.0 7.2E+02 0.016 24.0 12.6 66 16-89 62-136 (447)
255 COG1387 HIS2 Histidinol phosph 21.9 5.5E+02 0.012 22.6 9.2 151 40-204 18-190 (237)
256 PRK06582 coproporphyrinogen II 21.9 4.7E+02 0.01 25.0 8.2 61 100-162 173-250 (390)
257 TIGR01182 eda Entner-Doudoroff 21.8 2.5E+02 0.0054 24.3 5.7 88 102-205 18-106 (204)
258 PRK14459 ribosomal RNA large s 21.7 7.1E+02 0.015 23.8 9.3 92 120-211 237-359 (373)
259 COG2040 MHT1 Homocysteine/sele 21.6 6.4E+02 0.014 23.2 11.1 167 36-208 41-241 (300)
260 PRK14462 ribosomal RNA large s 21.4 7E+02 0.015 23.6 9.7 86 126-211 225-338 (356)
261 PRK09490 metH B12-dependent me 21.4 1.2E+03 0.026 26.3 13.3 105 103-212 383-492 (1229)
262 PRK00499 rnpA ribonuclease P; 21.4 3.8E+02 0.0083 20.5 6.8 63 78-149 38-104 (114)
263 PRK04390 rnpA ribonuclease P; 21.3 4E+02 0.0086 20.7 7.1 64 78-149 44-110 (120)
264 TIGR01428 HAD_type_II 2-haloal 21.3 1.8E+02 0.004 24.3 4.8 64 106-171 61-128 (198)
265 CHL00162 thiG thiamin biosynth 21.1 6.2E+02 0.013 22.8 8.9 52 100-151 80-138 (267)
266 PF00697 PRAI: N-(5'phosphorib 21.1 81 0.0018 26.9 2.5 68 112-183 13-81 (197)
267 PRK12360 4-hydroxy-3-methylbut 21.1 6.1E+02 0.013 23.2 8.2 43 250-293 226-274 (281)
268 PTZ00081 enolase; Provisional 21.1 7.9E+02 0.017 24.0 9.7 96 101-205 281-381 (439)
269 cd06543 GH18_PF-ChiA-like PF-C 21.0 6.5E+02 0.014 23.0 14.3 182 20-212 72-265 (294)
270 PRK10076 pyruvate formate lyas 21.0 5.5E+02 0.012 22.2 12.5 26 36-61 52-78 (213)
271 PRK08776 cystathionine gamma-s 21.0 4.3E+02 0.0094 25.3 7.8 73 138-210 111-185 (405)
272 PF13467 RHH_4: Ribbon-helix-h 20.9 1.3E+02 0.0029 20.9 3.1 27 247-273 22-48 (67)
273 PF08418 Pol_alpha_B_N: DNA po 20.9 94 0.002 27.6 3.0 48 245-293 9-59 (253)
274 PRK03459 rnpA ribonuclease P; 20.9 4.1E+02 0.009 20.8 6.9 63 78-149 48-114 (122)
275 PF09370 TIM-br_sig_trns: TIM- 20.8 1.7E+02 0.0037 26.4 4.5 54 102-162 64-117 (268)
276 PF02401 LYTB: LytB protein; 20.8 3.3E+02 0.0072 24.9 6.5 44 249-293 225-274 (281)
277 COG4626 Phage terminase-like p 20.8 3.8E+02 0.0081 27.0 7.2 73 134-209 410-485 (546)
278 PF13518 HTH_28: Helix-turn-he 20.5 1.3E+02 0.0027 18.9 2.8 22 250-272 14-35 (52)
279 PRK01045 ispH 4-hydroxy-3-meth 20.5 6.8E+02 0.015 23.1 9.0 43 250-293 227-275 (298)
280 PRK07531 bifunctional 3-hydrox 20.4 8.4E+02 0.018 24.1 10.2 125 121-270 80-218 (495)
281 COG4943 Predicted signal trans 20.4 5.3E+02 0.012 25.6 7.9 128 68-207 342-478 (524)
282 TIGR00290 MJ0570_dom MJ0570-re 20.3 5.9E+02 0.013 22.3 10.4 65 249-318 101-174 (223)
283 TIGR03217 4OH_2_O_val_ald 4-hy 20.2 7.1E+02 0.015 23.2 16.7 24 35-58 21-44 (333)
284 TIGR01163 rpe ribulose-phospha 20.2 5.2E+02 0.011 21.7 7.5 100 101-204 8-108 (210)
285 cd04734 OYE_like_3_FMN Old yel 20.2 7.2E+02 0.016 23.2 14.1 39 140-178 274-313 (343)
286 TIGR00262 trpA tryptophan synt 20.2 6.3E+02 0.014 22.6 9.0 72 137-210 72-151 (256)
287 PRK10551 phage resistance prot 20.1 6.4E+02 0.014 25.1 9.0 116 81-208 349-475 (518)
288 PRK14456 ribosomal RNA large s 20.0 5E+02 0.011 24.7 7.8 98 114-211 227-353 (368)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=7.5e-70 Score=501.40 Aligned_cols=305 Identities=46% Similarity=0.711 Sum_probs=274.1
Q ss_pred CceeeCCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCC-CCCEE
Q 019272 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGY-RERVE 83 (343)
Q Consensus 5 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~-R~~~~ 83 (343)
|++++||++|++||+||||||.+|+.+. ..+++++.++|++|+++||||||||+.||.|.||+++|++|+... |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~-~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTD-DEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCC-chhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 7899999999999999999999986422 225567888999999999999999999999999999999999854 89999
Q ss_pred EEeecCcccCC-CCC-CCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCc
Q 019272 84 LATKFGIINED-GQF-LYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEAS 161 (343)
Q Consensus 84 i~tK~~~~~~~-~~~-~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 161 (343)
|+||++....+ ... ..++++++|+++++.||+|||||||||||+||||+..+.++++.+|.+|+++|+||+||+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 99999987642 222 2578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-CCeeEecccccccccchhhhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhc-cccchhh
Q 019272 162 ASTIRRAHAV-HPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQS-LPRFQAE 239 (343)
Q Consensus 162 ~~~l~~~~~~-~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~-~p~~~~~ 239 (343)
++++.+++.. .+++++|.+||+++|..+.+++++|+++||++++|+||++|+|+ +++... ..+.+.. .+.+..+
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Lt-gk~~~~---~~~~r~~~~~~~~~~ 235 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLT-GKYLPG---PEGSRASELPRFQRE 235 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccC-CCcCCC---cchhhccccccchhh
Confidence 9999999999 59999999999999887778999999999999999999999999 664332 2222222 3666677
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcc
Q 019272 240 NLEHNKKLFERVNEIAAKKGCTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTSEEIAELESIASA 314 (343)
Q Consensus 240 ~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~ 314 (343)
..+....+.+.++++|+++|+|++|+||+|++++|.+++||+|+++++||++|+++++..|++++++.|++....
T Consensus 236 ~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 236 LTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 788889999999999999999999999999999999999999999999999999999999999999999988754
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=3.2e-68 Score=480.92 Aligned_cols=316 Identities=48% Similarity=0.726 Sum_probs=279.0
Q ss_pred CCceeeCCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhc--CCCCC
Q 019272 4 AVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKG--GYRER 81 (343)
Q Consensus 4 ~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~--~~R~~ 81 (343)
.|.++.+|++|++||++|||||.+..+ +...+++++.+++++|+|+|+||||||++||.|.||.++|++|++ ..|++
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~~-~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~ 89 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTTF-GGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDK 89 (336)
T ss_pred cceeeeccCCCceecceeecceeeecc-ccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCc
Confidence 488999999999999999999866443 433689999999999999999999999999999999999999998 47999
Q ss_pred EEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCc
Q 019272 82 VELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEAS 161 (343)
Q Consensus 82 ~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 161 (343)
++|+||++... .+......++..+...++.|++|||++||||||+||+|+..+.++++++|.+++++|+||+||+|+++
T Consensus 90 vviaTK~~~~~-~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~s 168 (336)
T KOG1575|consen 90 VVIATKFGFDY-GGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWS 168 (336)
T ss_pred EEEEEEEeccC-CCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCC
Confidence 99999999765 22224567889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC--eeEecccccccccchh-hhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhh----ccc
Q 019272 162 ASTIRRAHAVHP--ITAVQLEWSLWTRDAE-AEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQ----SLP 234 (343)
Q Consensus 162 ~~~l~~~~~~~~--~~~~q~~~~~~~~~~~-~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~----~~p 234 (343)
++++++++...+ +.++|++||++.|..+ .++++.|++.||++++|+||++|+|+++....++.+..+.+. ..|
T Consensus 169 a~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~~~~ 248 (336)
T KOG1575|consen 169 AEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLGLSP 248 (336)
T ss_pred HHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccccccccccccccc
Confidence 999999999977 9999999999999855 459999999999999999999999994334445454443221 123
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcc
Q 019272 235 RFQAENLEHNKKLFERVNEIAAKKGCTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTSEEIAELESIASA 314 (343)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~ 314 (343)
++... ...+.+++++.++|+++|+|++|+||+|+++++.+++||||+++.+||+||++|++..||++++.+|+++.+.
T Consensus 249 ~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~~~ 326 (336)
T KOG1575|consen 249 QTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEIIDK 326 (336)
T ss_pred ccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhhcc
Confidence 33222 5677899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCC
Q 019272 315 DAVKGDRYG 323 (343)
Q Consensus 315 ~~~~~~~~~ 323 (343)
....+.+|.
T Consensus 327 ~~~~~~~~~ 335 (336)
T KOG1575|consen 327 ILGFGPRSI 335 (336)
T ss_pred ccCcCCCCC
Confidence 887777764
No 3
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=6.3e-63 Score=458.68 Aligned_cols=298 Identities=29% Similarity=0.447 Sum_probs=250.4
Q ss_pred eeeCCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcC--CCCCEEE
Q 019272 7 RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGG--YRERVEL 84 (343)
Q Consensus 7 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~--~R~~~~i 84 (343)
||+||++|++||+||||||++ +|...+.+++.++|+.|+++|||+||||+.||.|.||+++|++|+.. .|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 578999999999999999974 23334778899999999999999999999999999999999999852 5999999
Q ss_pred EeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHH
Q 019272 85 ATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASAST 164 (343)
Q Consensus 85 ~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~ 164 (343)
+||++..... ....+.+++.+++++++||+|||+||||+|++|||++..+.+++|++|++|+++||||+||+|||+.++
T Consensus 78 aTK~~~~~~~-~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~ 156 (317)
T TIGR01293 78 TTKIFWGGKA-ETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSME 156 (317)
T ss_pred EeeeccCCCC-CCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHH
Confidence 9998643111 111356899999999999999999999999999999888899999999999999999999999999988
Q ss_pred HHHHhcC------CCeeEecccccccccch-hhhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhcccc--
Q 019272 165 IRRAHAV------HPITAVQLEWSLWTRDA-EAEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSLPR-- 235 (343)
Q Consensus 165 l~~~~~~------~~~~~~q~~~~~~~~~~-~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~-- 235 (343)
++++... .+++++|++||++++.. +.+++++|+++||++++|+||++|+|+ +++... ++.+. +...+.
T Consensus 157 l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Lt-g~~~~~-~~~~~-~~~~~~~~ 233 (317)
T TIGR01293 157 IMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVS-GKYDSG-IPPYS-RATLKGYQ 233 (317)
T ss_pred HHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccC-CCCCCC-CCCcc-cccccccc
Confidence 8776432 46789999999999874 568999999999999999999999999 553222 22211 111110
Q ss_pred -c----hhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhcCC--CCCHHHHHHH
Q 019272 236 -F----QAENLEHNKKLFERVNEIAAKKGCTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSV--KLTSEEIAEL 308 (343)
Q Consensus 236 -~----~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~~~--~Lt~e~~~~l 308 (343)
+ ..+........++.++++|+++|+|++|+||+|++++|.++++|+|+++++|+++|+++++. +||++++++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l 313 (317)
T TIGR01293 234 WLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEI 313 (317)
T ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 1 11222335667789999999999999999999999999999999999999999999999997 9999999999
Q ss_pred Hhh
Q 019272 309 ESI 311 (343)
Q Consensus 309 ~~~ 311 (343)
+++
T Consensus 314 ~~~ 316 (317)
T TIGR01293 314 DSI 316 (317)
T ss_pred Hhh
Confidence 975
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.8e-62 Score=460.21 Aligned_cols=306 Identities=27% Similarity=0.505 Sum_probs=253.7
Q ss_pred CCceeeCCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCC--CchHHHHHHHhhcC---C
Q 019272 4 AVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYGP--HTNEILLGKALKGG---Y 78 (343)
Q Consensus 4 ~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~--g~sE~~lG~al~~~---~ 78 (343)
.|+|++||++|++||+||||||+. +|...+.+++.++|+.|+++|||+||||+.||. |.||..+|++|++. .
T Consensus 12 ~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~ 88 (346)
T PRK09912 12 QMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAY 88 (346)
T ss_pred CcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCC
Confidence 489999999999999999999972 233335678899999999999999999999995 89999999999863 5
Q ss_pred CCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecC
Q 019272 79 RERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLS 158 (343)
Q Consensus 79 R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs 158 (343)
|++++|+||+|....++....+.+++.+++++++||+|||+||||+|++|||++..+.++++++|++|+++||||+||||
T Consensus 89 Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGvS 168 (346)
T PRK09912 89 RDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGIS 168 (346)
T ss_pred CCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEec
Confidence 99999999998531111111346899999999999999999999999999999888899999999999999999999999
Q ss_pred CCcHHHHHHHhcC-----CCeeEecccccccccchh-hhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhh-
Q 019272 159 EASASTIRRAHAV-----HPITAVQLEWSLWTRDAE-AEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQ- 231 (343)
Q Consensus 159 ~~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~-~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~- 231 (343)
||++++++++.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|+ +++... .+.+.-..
T Consensus 169 n~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt-~~~~~~-~~~~~~~~~ 246 (346)
T PRK09912 169 SYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLT-GKYLNG-IPQDSRMHR 246 (346)
T ss_pred CCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCcccc-CCCCCC-CCCCccccc
Confidence 9999988765542 367899999999998654 47999999999999999999999999 543221 11110000
Q ss_pred ---ccccchhhhh-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhc-CCCCCHHHHH
Q 019272 232 ---SLPRFQAENL-EHNKKLFERVNEIAAKKGCTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKAL-SVKLTSEEIA 306 (343)
Q Consensus 232 ---~~p~~~~~~~-~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~-~~~Lt~e~~~ 306 (343)
..+.+.+..+ +...++.+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||++|++++ .++|++++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~~~ 326 (346)
T PRK09912 247 EGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEELA 326 (346)
T ss_pred cccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHHHH
Confidence 0011111111 3345677899999999999999999999999999999999999999999999998 4899999999
Q ss_pred HHHhhhcc
Q 019272 307 ELESIASA 314 (343)
Q Consensus 307 ~l~~~~~~ 314 (343)
+|+++.++
T Consensus 327 ~l~~~~~~ 334 (346)
T PRK09912 327 QIDQHIAD 334 (346)
T ss_pred HHHHhhCc
Confidence 99998754
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=4.6e-62 Score=458.17 Aligned_cols=304 Identities=29% Similarity=0.416 Sum_probs=252.2
Q ss_pred CceeeCCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCC-------CCchHHHHHHHhhcC
Q 019272 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYG-------PHTNEILLGKALKGG 77 (343)
Q Consensus 5 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-------~g~sE~~lG~al~~~ 77 (343)
|+|++||+||++||+||||||++|+ ..+.+++.++|+.|+++|||+||||+.|| .|.||.++|++|+..
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999863 23678899999999999999999999998 488999999999853
Q ss_pred -CCCCEEEEeecCcccCC-CC---CCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCC-----------------CCC
Q 019272 78 -YRERVELATKFGIINED-GQ---FLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDT-----------------KVP 135 (343)
Q Consensus 78 -~R~~~~i~tK~~~~~~~-~~---~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~-----------------~~~ 135 (343)
.|++++|+||++..... .. ...+++++.+++++++||+|||+||||||++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 59999999999642211 00 012468999999999999999999999999999965 245
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhc------CCCeeEecccccccccchhhhhHHHHHHhCCeEEecccC
Q 019272 136 IEITIGELKKLVEEGKIKYIGLSEASASTIRRAHA------VHPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 136 ~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~------~~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl 209 (343)
++++|++|++|+++|+||+||+|||+.++++++.. ...+.++|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 78999999999999999999999999988876543 235788999999999877678999999999999999999
Q ss_pred ccccCCCCCCcccCCCcchhhhccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCcHHHH
Q 019272 210 GRGFFSSGPELAENLSKDDYRQSLPRFQAENLEHNKKLFERVNEIAAKKGCTPSQLALAWVHHQGDDVCPIPGTTKIENL 289 (343)
Q Consensus 210 ~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~g~~~~~~l 289 (343)
++|+|+ ++......+.+......+.|.........++.+.++++|+++|+|++|+||+|++++|.|+++|+|+++++||
T Consensus 237 ~~G~Lt-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l 315 (346)
T PRK10625 237 AFGTLT-GKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQL 315 (346)
T ss_pred cCeecc-CCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHH
Confidence 999999 4432222221110000111211112345667789999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHhhhc
Q 019272 290 NQNIKALSVKLTSEEIAELESIAS 313 (343)
Q Consensus 290 ~enl~a~~~~Lt~e~~~~l~~~~~ 313 (343)
++|+++++++|++++++.|+++.+
T Consensus 316 ~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 316 KTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHHhhccCCCCHHHHHHHHHHHh
Confidence 999999999999999999999974
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.5e-62 Score=436.27 Aligned_cols=258 Identities=33% Similarity=0.498 Sum_probs=231.5
Q ss_pred CCceeeCCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhc--CCCCC
Q 019272 4 AVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKG--GYRER 81 (343)
Q Consensus 4 ~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~--~~R~~ 81 (343)
+|.+.+| ++|.+||.||||||++++ .+.+.+.+.+|++.|+|+||||..|| ||+.+|+++++ .+|++
T Consensus 2 ~~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Ree 70 (280)
T COG0656 2 MKTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREE 70 (280)
T ss_pred CCceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHH
Confidence 4566777 567889999999999852 23388999999999999999999999 99999999998 48999
Q ss_pred EEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCC--CCHHHHHHHHHHHHHcCCcceEecCC
Q 019272 82 VELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTK--VPIEITIGELKKLVEEGKIKYIGLSE 159 (343)
Q Consensus 82 ~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~--~~~~~~~~~L~~l~~~G~ir~iGvs~ 159 (343)
+||+||++.. +.+++.+.+++++||+|||+||||||+||||.+. ..+.++|++|++++++|+||+|||||
T Consensus 71 lFittKvw~~--------~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSN 142 (280)
T COG0656 71 LFITTKVWPS--------DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSN 142 (280)
T ss_pred eEEEeecCCc--------cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeC
Confidence 9999999976 5578999999999999999999999999999763 23689999999999999999999999
Q ss_pred CcHHHHHHHhcC--CCeeEecccccccccchhhhhHHHHHHhCCeEEecccCcccc-CCCCCCcccCCCcchhhhccccc
Q 019272 160 ASASTIRRAHAV--HPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPLGRGF-FSSGPELAENLSKDDYRQSLPRF 236 (343)
Q Consensus 160 ~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~-l~~~~~~~~~~~~~~~~~~~p~~ 236 (343)
|+.++|+++++. ..++++|++||++.++. +++++|+++||.++|||||+.|. +. ..
T Consensus 143 F~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~----------------~~--- 201 (280)
T COG0656 143 FGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLL----------------DN--- 201 (280)
T ss_pred CCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccccccc----------------cC---
Confidence 999999999887 45899999999999954 59999999999999999999653 32 01
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhccC
Q 019272 237 QAENLEHNKKLFERVNEIAAKKGCTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTSEEIAELESIASAD 315 (343)
Q Consensus 237 ~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~ 315 (343)
+.+.+||++||.|++|++|+|+++++. +|||.+++++|+++|++++++.||+|||+.|+++....
T Consensus 202 ------------~~l~~Ia~k~g~t~AQv~L~W~i~~gv--~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~ 266 (280)
T COG0656 202 ------------PVLAEIAKKYGKTPAQVALRWHIQRGV--IVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGY 266 (280)
T ss_pred ------------hHHHHHHHHhCCCHHHHHHHHHHhCCc--EEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhcccc
Confidence 279999999999999999999999995 89999999999999999999999999999999998754
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=8.1e-60 Score=437.43 Aligned_cols=286 Identities=29% Similarity=0.437 Sum_probs=243.9
Q ss_pred eeeCCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhc--CCCCCEEE
Q 019272 7 RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKG--GYRERVEL 84 (343)
Q Consensus 7 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~~i 84 (343)
||+||+||++||.||||||++|+.|+. .+.+++.++|+.|+++|||+||||+.||.|.||..+|++|++ ..|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 688999999999999999999876664 477899999999999999999999999999999999999987 36999999
Q ss_pred EeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCC---CCHHHHHHHHHHHHHcCCcceEecCCCc
Q 019272 85 ATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTK---VPIEITIGELKKLVEEGKIKYIGLSEAS 161 (343)
Q Consensus 85 ~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~---~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 161 (343)
+||++.... ..+++++.+++++++||+|||+||||+|++|||+.. .+.+++|++|++|+++||||+||+|||+
T Consensus 80 ~TK~~~~~~----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 155 (314)
T PLN02587 80 STKCGRYGE----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLP 155 (314)
T ss_pred EeccccCCC----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 999985321 125689999999999999999999999999999742 3457899999999999999999999999
Q ss_pred HHHHHHHhcC---C--CeeEecccccccccchhhhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhccccc
Q 019272 162 ASTIRRAHAV---H--PITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSLPRF 236 (343)
Q Consensus 162 ~~~l~~~~~~---~--~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~ 236 (343)
+++++.+... . .+..+|+.||+.++.. .+++++|+++||++++|+||++|+|+ ++..+. +
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~-~~~~~~-------------~ 220 (314)
T PLN02587 156 LAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLT-ENGPPE-------------W 220 (314)
T ss_pred HHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccC-CCCCCC-------------C
Confidence 9888776543 2 3444578899887643 48999999999999999999999998 432110 0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhcC----CCCCHHHHHHHHhhh
Q 019272 237 QAENLEHNKKLFERVNEIAAKKGCTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALS----VKLTSEEIAELESIA 312 (343)
Q Consensus 237 ~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~~----~~Lt~e~~~~l~~~~ 312 (343)
.+ ..+......+.++++|+++|+|++|+||+|++++|.|++||+|+++++|+++|+++++ .+|+++++++|+++.
T Consensus 221 ~~-~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~ 299 (314)
T PLN02587 221 HP-APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAIL 299 (314)
T ss_pred CC-CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhh
Confidence 00 0123456677899999999999999999999999999999999999999999999976 379999999999987
Q ss_pred c
Q 019272 313 S 313 (343)
Q Consensus 313 ~ 313 (343)
.
T Consensus 300 ~ 300 (314)
T PLN02587 300 A 300 (314)
T ss_pred c
Confidence 5
No 8
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.9e-58 Score=423.29 Aligned_cols=281 Identities=30% Similarity=0.492 Sum_probs=242.1
Q ss_pred CccCCceeeCCCCCcccCccccccccCCC--CCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCC
Q 019272 1 MAGAVKRIKLGSQGLEVSAQGLGCMGMSA--FYGPPKPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGY 78 (343)
Q Consensus 1 ~~~~m~~~~lg~tg~~vs~lglG~~~~~~--~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~ 78 (343)
|+..|...++.-+|++||+||||||++|+ .||...+++++.++|+.|++.|||+||||+.||+|.+|..+|++++. .
T Consensus 1 ~~~~~~~~~~~l~g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~ 79 (290)
T PRK10376 1 MSTIMSSGTFTLGGRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-Y 79 (290)
T ss_pred CcccccCCceecCCeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-C
Confidence 56667655544459999999999999975 36655578889999999999999999999999999999999999976 5
Q ss_pred CCCEEEEeecCcccCCC-CCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCC-----CCCHHHHHHHHHHHHHcCCc
Q 019272 79 RERVELATKFGIINEDG-QFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDT-----KVPIEITIGELKKLVEEGKI 152 (343)
Q Consensus 79 R~~~~i~tK~~~~~~~~-~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~-----~~~~~~~~~~L~~l~~~G~i 152 (343)
|++++|+||++....+. ....+.+++.+++++++||+|||+||||+|++|+++. ..+.+++|++|++|+++|||
T Consensus 80 R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gki 159 (290)
T PRK10376 80 PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLV 159 (290)
T ss_pred CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCce
Confidence 99999999997643211 1123568999999999999999999999999888521 23478999999999999999
Q ss_pred ceEecCCCcHHHHHHHhcCCCeeEecccccccccchhhhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhc
Q 019272 153 KYIGLSEASASTIRRAHAVHPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQS 232 (343)
Q Consensus 153 r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~ 232 (343)
|+||+|||+.++++++.+..+++++|++||++++. ..+++++|+++||++++|+||+++...
T Consensus 160 r~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pL~g~~~~----------------- 221 (290)
T PRK10376 160 RHIGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRA-DDALIDALARDGIAYVPFFPLGGFTPL----------------- 221 (290)
T ss_pred eEEEecCCCHHHHHHHHhhCCeEEEecccCCCcCC-hHHHHHHHHHcCCEEEEeecCCCCChh-----------------
Confidence 99999999999999999888999999999999976 357999999999999999999743100
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhh
Q 019272 233 LPRFQAENLEHNKKLFERVNEIAAKKGCTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTSEEIAELESIA 312 (343)
Q Consensus 233 ~p~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~ 312 (343)
..+.+.++|+++|+|++|+||+|+++++.++++|+|+++++|+++|+++++++|++++++.|+++.
T Consensus 222 --------------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~ 287 (290)
T PRK10376 222 --------------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIA 287 (290)
T ss_pred --------------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 014789999999999999999999998767789999999999999999999999999999999986
Q ss_pred cc
Q 019272 313 SA 314 (343)
Q Consensus 313 ~~ 314 (343)
+.
T Consensus 288 ~~ 289 (290)
T PRK10376 288 RE 289 (290)
T ss_pred hc
Confidence 53
No 9
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=2.8e-58 Score=422.11 Aligned_cols=280 Identities=43% Similarity=0.652 Sum_probs=249.0
Q ss_pred eeeCCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCC-CCCEEEE
Q 019272 7 RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGY-RERVELA 85 (343)
Q Consensus 7 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~-R~~~~i~ 85 (343)
+++||+||++||+||||||+++..+ .+.+++.++++.|++.|||+||||+.||.|.||..+|++|++.. |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999987544 36789999999999999999999999999999999999999865 9999999
Q ss_pred eecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCC-HHHHHHHHHHHHHcCCcceEecCCCcHHH
Q 019272 86 TKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVP-IEITIGELKKLVEEGKIKYIGLSEASAST 164 (343)
Q Consensus 86 tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~-~~~~~~~L~~l~~~G~ir~iGvs~~~~~~ 164 (343)
||++...... .+.+++.+++++++||++||+||||+|+||+|+.... ..++|++|++++++|+||+||+|||+.+.
T Consensus 78 tK~~~~~~~~---~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~ 154 (285)
T cd06660 78 TKVGPRPGDG---RDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQ 154 (285)
T ss_pred eeecCCCCCC---CCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHH
Confidence 9998653211 3578999999999999999999999999999988766 78999999999999999999999999999
Q ss_pred HHHHhcC--CCeeEecccccccccchhhhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhccccchhhhhH
Q 019272 165 IRRAHAV--HPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSLPRFQAENLE 242 (343)
Q Consensus 165 l~~~~~~--~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 242 (343)
+++++.. .+++++|++||++++....+++++|+++||++++|+||++|.+..........+.
T Consensus 155 l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~---------------- 218 (285)
T cd06660 155 LEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPE---------------- 218 (285)
T ss_pred HHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCCh----------------
Confidence 9999888 8999999999999998666799999999999999999999988722211111100
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHh
Q 019272 243 HNKKLFERVNEIAAKKGCTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTSEEIAELES 310 (343)
Q Consensus 243 ~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~~~~Lt~e~~~~l~~ 310 (343)
......+..++++++++++|+||+|++++|.++++|+|+++++|+++|+++..++||+++++.|++
T Consensus 219 --~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 219 --GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred --hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 114468999999999999999999999999999999999999999999999999999999999986
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=2e-57 Score=415.98 Aligned_cols=277 Identities=34% Similarity=0.516 Sum_probs=232.4
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhc--CCCCCEEEEeecCcccCCCC
Q 019272 19 AQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKG--GYRERVELATKFGIINEDGQ 96 (343)
Q Consensus 19 ~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~~i~tK~~~~~~~~~ 96 (343)
+||||||++++. ..+.+++.++|+.|++.|||+||||+.||+|.||..+|++|++ .+|++++|+||+.. ...
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~---~~~ 74 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYG---DGK 74 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEES---SSS
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccc---ccc
Confidence 589999998643 4589999999999999999999999999999999999999988 68999999999921 112
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCC-HHHHHHHHHHHHHcCCcceEecCCCcHHHHHHH--hcCCC
Q 019272 97 FLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVP-IEITIGELKKLVEEGKIKYIGLSEASASTIRRA--HAVHP 173 (343)
Q Consensus 97 ~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~-~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~--~~~~~ 173 (343)
.....+++.+++++++||+|||+||||+|++|+|+.... .+++|++|++|+++|+||+||||||+++.++++ ....+
T Consensus 75 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 154 (283)
T PF00248_consen 75 PEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIP 154 (283)
T ss_dssp TGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-
T ss_pred ccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 234779999999999999999999999999999999998 899999999999999999999999999999999 55688
Q ss_pred eeEecccccccccchhhhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhccccchhhhhHHHHHHHHHHHH
Q 019272 174 ITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSLPRFQAENLEHNKKLFERVNE 253 (343)
Q Consensus 174 ~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ 253 (343)
++++|++||++.+....+++++|+++||++++|+|+++|+|+++.......+...... ......+.+.+
T Consensus 155 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~ 223 (283)
T PF00248_consen 155 PDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLR-----------DAQELADALRE 223 (283)
T ss_dssp ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSS-----------THGGGHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccCccccccccCCCcccccccc-----------hhhhhhhhhhh
Confidence 9999999999977777899999999999999999999999983322222211111000 02345678999
Q ss_pred HHHHhCCCHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhh
Q 019272 254 IAAKKGCTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTSEEIAELESIA 312 (343)
Q Consensus 254 ia~~~~~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~ 312 (343)
+++++|+|++|+||+|+++++.+.+||+|+++++|+++|+++++++||++++++|+++.
T Consensus 224 ~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 224 LAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999875
No 11
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.9e-57 Score=403.55 Aligned_cols=264 Identities=31% Similarity=0.475 Sum_probs=233.4
Q ss_pred CccCCceeeCCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhc----
Q 019272 1 MAGAVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKG---- 76 (343)
Q Consensus 1 ~~~~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~---- 76 (343)
|+... +..| ++|.+||.||||||+. +..++.++++.|++.|+||||||..|| +|..+|++|++
T Consensus 1 M~~~~-~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~ 67 (300)
T KOG1577|consen 1 MSSKT-TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAE 67 (300)
T ss_pred CCccc-eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhh
Confidence 34433 6778 8999999999999984 568899999999999999999999999 89999999985
Q ss_pred --CCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCC----------------CCHHH
Q 019272 77 --GYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTK----------------VPIEI 138 (343)
Q Consensus 77 --~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~----------------~~~~~ 138 (343)
.+|+++||+||++.. .+.++.++.++++||++||+||+|||++|||-.. .+..+
T Consensus 68 ~~v~RediFiTSKlw~~--------~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~ 139 (300)
T KOG1577|consen 68 GGVKREDIFITSKLWPT--------DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIE 139 (300)
T ss_pred CCcchhhheeeeccCcc--------ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHH
Confidence 389999999999975 4578999999999999999999999999999653 34678
Q ss_pred HHHHHHHHHHcCCcceEecCCCcHHHHHHHhcC--CCeeEecccccccccchhhhhHHHHHHhCCeEEecccCccccCCC
Q 019272 139 TIGELKKLVEEGKIKYIGLSEASASTIRRAHAV--HPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPLGRGFFSS 216 (343)
Q Consensus 139 ~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~ 216 (343)
+|++|+++++.|++|+||||||+..++++++.. .++.++|+++|++.+ +.+++++|+++||.|.|||||+.+--.
T Consensus 140 tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~--Q~~L~~fCk~~~I~v~AYSpLg~~~~~- 216 (300)
T KOG1577|consen 140 TWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQ--QKKLVEFCKSKGIVVTAYSPLGSPGRG- 216 (300)
T ss_pred HHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcC--hHHHHHHHhhCCcEEEEecCCCCCCCc-
Confidence 999999999999999999999999999999887 678999999999887 567999999999999999999976210
Q ss_pred CCCcccCCCcchhhhccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhc
Q 019272 217 GPELAENLSKDDYRQSLPRFQAENLEHNKKLFERVNEIAAKKGCTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKAL 296 (343)
Q Consensus 217 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~ 296 (343)
. .+ . --+.+.+||++||.|++|++|||.++++. +|||.++|++|++||++++
T Consensus 217 --~---~l-----------l----------~~~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~~~~Ri~eN~~vf 268 (300)
T KOG1577|consen 217 --S---DL-----------L----------EDPVLKEIAKKYNKTPAQILLRWALQRGV--SVIPKSSNPERIKENFKVF 268 (300)
T ss_pred --c---cc-----------c----------cCHHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEeccCCHHHHHHHHhhc
Confidence 0 00 0 01389999999999999999999999997 8999999999999999999
Q ss_pred CCCCCHHHHHHHHhhhccCC
Q 019272 297 SVKLTSEEIAELESIASADA 316 (343)
Q Consensus 297 ~~~Lt~e~~~~l~~~~~~~~ 316 (343)
++.||+|||+.|+......+
T Consensus 269 df~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 269 DFELTEEDMKKLDSLNSNER 288 (300)
T ss_pred cccCCHHHHHHHhhccccce
Confidence 99999999999998876544
No 12
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=4.1e-56 Score=403.22 Aligned_cols=246 Identities=28% Similarity=0.428 Sum_probs=220.6
Q ss_pred cccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhc--CCCCCEEEEeecCccc
Q 019272 15 LEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKG--GYRERVELATKFGIIN 92 (343)
Q Consensus 15 ~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~~i~tK~~~~~ 92 (343)
++||.||||||+++ .+++.++++.|++.|||+||||+.|| +|..+|++|++ .+|++++|+||++..
T Consensus 1 ~~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 1 MSIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 36999999999863 36789999999999999999999999 79999999985 369999999998632
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCC--CCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhc
Q 019272 93 EDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTK--VPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHA 170 (343)
Q Consensus 93 ~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~--~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 170 (343)
..+++.+++++++||+|||+||||+|++|||++. .+.+++|++|++|+++||||+||||||+.++++++++
T Consensus 69 -------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~ 141 (267)
T PRK11172 69 -------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIA 141 (267)
T ss_pred -------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHH
Confidence 4578999999999999999999999999999763 4678999999999999999999999999999988876
Q ss_pred C---CCeeEecccccccccchhhhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhccccchhhhhHHHHHH
Q 019272 171 V---HPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSLPRFQAENLEHNKKL 247 (343)
Q Consensus 171 ~---~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 247 (343)
. .+++++|++||++.+. .+++++|+++||++++|+||++|.+.. .
T Consensus 142 ~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~----------------~-------------- 189 (267)
T PRK11172 142 AVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLK----------------D-------------- 189 (267)
T ss_pred hcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccC----------------C--------------
Confidence 4 3679999999999874 689999999999999999999986540 0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcc
Q 019272 248 FERVNEIAAKKGCTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTSEEIAELESIASA 314 (343)
Q Consensus 248 ~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~ 314 (343)
+.+.++|+++|+|++|+||+|+++++. +||+|+++++|+++|+++++++||++++++|+++.+.
T Consensus 190 -~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 190 -PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 258899999999999999999999975 6899999999999999999999999999999999754
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1.1e-55 Score=404.34 Aligned_cols=268 Identities=21% Similarity=0.272 Sum_probs=227.1
Q ss_pred CcccCccccccccCCCC-------CCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEe
Q 019272 14 GLEVSAQGLGCMGMSAF-------YGPPKPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELAT 86 (343)
Q Consensus 14 g~~vs~lglG~~~~~~~-------~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~t 86 (343)
+++||+||||||++|+. ||. .+++++.++|+.|++.||||||||+.||. ||.++|++|++..+.+++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFGR--AETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhhh--HHHHHhhhhccCCceEeeccc
Confidence 57899999999999853 343 58899999999999999999999999975 999999999763345788888
Q ss_pred ecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCC-CCH-HHHHHHHHHHHHcCCcceEecCCCcHHH
Q 019272 87 KFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTK-VPI-EITIGELKKLVEEGKIKYIGLSEASAST 164 (343)
Q Consensus 87 K~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~-~~~-~~~~~~L~~l~~~G~ir~iGvs~~~~~~ 164 (343)
|.. +.+++.+++++++||+|||+||||+|++|+|++. .+. +++|++|++|+++||||+||+|||++++
T Consensus 79 k~~----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~ 148 (292)
T PRK14863 79 VRA----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDD 148 (292)
T ss_pred ccc----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHH
Confidence 842 2468999999999999999999999999999763 233 5789999999999999999999999999
Q ss_pred HHHHhcCCCeeEecccccccccchh-hhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhccccchhhhhHH
Q 019272 165 IRRAHAVHPITAVQLEWSLWTRDAE-AEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSLPRFQAENLEH 243 (343)
Q Consensus 165 l~~~~~~~~~~~~q~~~~~~~~~~~-~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 243 (343)
+..+....+++++|++||++++..+ .+++++|+++||++++|+||++|+|. +.. ... +. .+.+
T Consensus 149 ~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~-~~~--~~~---------~~----~~~~ 212 (292)
T PRK14863 149 PVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLF-LPP--DRV---------PA----QLKG 212 (292)
T ss_pred HHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCcccc-CCc--ccC---------cc----chhh
Confidence 8888877899999999999998654 46999999999999999999999997 221 000 10 0112
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHh
Q 019272 244 NKKLFERVNEIAAKKGCTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTSEEIAELES 310 (343)
Q Consensus 244 ~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~~~~Lt~e~~~~l~~ 310 (343)
....+..+.+++.++++|++|+||+|++++|.|+++|+|+++++|+++|+++.+.+++++.+++|..
T Consensus 213 ~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 213 ASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccC
Confidence 2344567788888899999999999999999999999999999999999999998999988766643
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=3.3e-54 Score=392.05 Aligned_cols=254 Identities=28% Similarity=0.398 Sum_probs=223.8
Q ss_pred eeeCCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcC--CCCCEEE
Q 019272 7 RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGG--YRERVEL 84 (343)
Q Consensus 7 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~--~R~~~~i 84 (343)
+..| ++|+.||+||||||++ +.+++.++|+.|++.|||+||||+.|| +|+.+|++|++. .|++++|
T Consensus 6 ~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~i 73 (275)
T PRK11565 6 VIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELFI 73 (275)
T ss_pred eEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEEE
Confidence 3557 8999999999999986 457899999999999999999999998 799999999863 5899999
Q ss_pred EeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCC-CHHHHHHHHHHHHHcCCcceEecCCCcHH
Q 019272 85 ATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKV-PIEITIGELKKLVEEGKIKYIGLSEASAS 163 (343)
Q Consensus 85 ~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~-~~~~~~~~L~~l~~~G~ir~iGvs~~~~~ 163 (343)
+||++. .+++.+++++++||+|||+||||+|++|+|++.. +..++|++|++|+++|+||+||+|||+++
T Consensus 74 ~tK~~~----------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~ 143 (275)
T PRK11565 74 TTKLWN----------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIH 143 (275)
T ss_pred EEEecC----------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHH
Confidence 999863 2568899999999999999999999999998754 46899999999999999999999999999
Q ss_pred HHHHHhcCC--CeeEecccccccccchhhhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhccccchhhhh
Q 019272 164 TIRRAHAVH--PITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSLPRFQAENL 241 (343)
Q Consensus 164 ~l~~~~~~~--~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~ 241 (343)
++++++... .+.++|++||++.+ +.+++++|+++||++++|+||++|... .+.
T Consensus 144 ~l~~~~~~~~v~~~~~Q~~~~~~~~--~~~~~~~~~~~~i~~~a~spl~~G~~~-------------------~~~---- 198 (275)
T PRK11565 144 HLQRLIDETGVTPVINQIELHPLMQ--QRQLHAWNATHKIQTESWSPLAQGGKG-------------------VFD---- 198 (275)
T ss_pred HHHHHHHhCCCCceeeeeecCCccc--hHHHHHHHHHCCCEEEEEccCCCCCcc-------------------ccc----
Confidence 998887543 46889999999887 357999999999999999999976210 000
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhccC
Q 019272 242 EHNKKLFERVNEIAAKKGCTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTSEEIAELESIASAD 315 (343)
Q Consensus 242 ~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~ 315 (343)
.+.+.++|+++|+|++|+||||+++++. +||+|+++++|+++|+++++++|+++++++|+++....
T Consensus 199 ------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~ 264 (275)
T PRK11565 199 ------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGK 264 (275)
T ss_pred ------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccC
Confidence 1368899999999999999999999986 68999999999999999999999999999999997543
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.8e-54 Score=368.48 Aligned_cols=284 Identities=29% Similarity=0.441 Sum_probs=253.7
Q ss_pred CceeeCCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhc--CCCCCE
Q 019272 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKG--GYRERV 82 (343)
Q Consensus 5 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~ 82 (343)
|++.+|++.|+.+|+|.+|+|++.. |+ ++..+...+++.|++.|||+||-|+.||+++.|.++|.+|+- ..|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 7889999999999999999999953 33 356789999999999999999999999999999999999976 379999
Q ss_pred EEEeecCcccCCC----CCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecC
Q 019272 83 ELATKFGIINEDG----QFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLS 158 (343)
Q Consensus 83 ~i~tK~~~~~~~~----~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs 158 (343)
.|+||+|...... ..++++|.++|..|+++||+||+|||+|+++||+||+..+.+++.+|+..|++.||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999999764321 235688999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHhcC--CCeeEecccccccccc-hhhhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhcccc
Q 019272 159 EASASTIRRAHAV--HPITAVQLEWSLWTRD-AEAEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSLPR 235 (343)
Q Consensus 159 ~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~-~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~ 235 (343)
||++.+++-+.+. .++.++|++.|+++.. ...+.+++|+.+.|.+++||||++|.+..|.
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~----------------- 220 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD----------------- 220 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC-----------------
Confidence 9999999988887 4578999999998865 3457999999999999999999998555221
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcc
Q 019272 236 FQAENLEHNKKLFERVNEIAAKKG-CTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTSEEIAELESIASA 314 (343)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~ia~~~~-~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~ 314 (343)
...+.+..++..+|.++| .|..++|++|++.+|.-..||+|+.+++++++.++|++..||.++|-+|..+..+
T Consensus 221 ------~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G 294 (298)
T COG4989 221 ------DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIG 294 (298)
T ss_pred ------cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 122446679999999999 7999999999999999999999999999999999999999999999999888754
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.4e-52 Score=359.37 Aligned_cols=294 Identities=24% Similarity=0.359 Sum_probs=250.2
Q ss_pred cCCceeeCCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCE
Q 019272 3 GAVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERV 82 (343)
Q Consensus 3 ~~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~ 82 (343)
++|.||.+|+||++||+||||+..+++.||. .++++....+..|+.+|||+|||++.||+++||..+|.++++.||+.+
T Consensus 20 rrmeyR~lg~tgl~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aY 98 (342)
T KOG1576|consen 20 RRMEYRQLGSTGLRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAY 98 (342)
T ss_pred HHHHHhhcCCCcceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhe
Confidence 3589999999999999999999999998887 367777777777999999999999999999999999999999999999
Q ss_pred EEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCC----CCHHHHHHHHHHHHHcCCcceEecC
Q 019272 83 ELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTK----VPIEITIGELKKLVEEGKIKYIGLS 158 (343)
Q Consensus 83 ~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~----~~~~~~~~~L~~l~~~G~ir~iGvs 158 (343)
||+||++...-+....+++|++.+++++++||+||++||+|++++|..+.. ..+.|++.+|++++++||||+||++
T Consensus 99 yIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGit 178 (342)
T KOG1576|consen 99 YIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGIT 178 (342)
T ss_pred eeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeec
Confidence 999999976444334468999999999999999999999999999997654 3457999999999999999999999
Q ss_pred CCcHHHHHHHhcCC--CeeEec--ccccccccchhhhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhccc
Q 019272 159 EASASTIRRAHAVH--PITAVQ--LEWSLWTRDAEAEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSLP 234 (343)
Q Consensus 159 ~~~~~~l~~~~~~~--~~~~~q--~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p 234 (343)
.++.+.+.++.+.. .++++. ++|++.+.. .-..+++.+.+|++|+..++++.|+|+ .+.. |
T Consensus 179 gypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt-~~gp-------------~ 243 (342)
T KOG1576|consen 179 GYPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLT-NQGP-------------P 243 (342)
T ss_pred ccchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhh-cCCC-------------C
Confidence 99999999998773 467775 677776654 246788889999999999999999998 3211 1
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhc
Q 019272 235 RFQAENLEHNKKLFERVNEIAAKKGCTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTSEEIAELESIAS 313 (343)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~ 313 (343)
.| ++...+..+...+..++|++.|++++.+|+.|+++.++++++++|++|.++|+.|+++..-.||..+-++...+.+
T Consensus 244 ~w-HPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~~~r 321 (342)
T KOG1576|consen 244 PW-HPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLRILR 321 (342)
T ss_pred CC-CCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHHHHH
Confidence 11 1223556677788899999999999999999999999999999999999999999998777888844444444443
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=2.2e-50 Score=361.74 Aligned_cols=273 Identities=30% Similarity=0.418 Sum_probs=242.3
Q ss_pred CceeeCCCCCcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEE
Q 019272 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVEL 84 (343)
Q Consensus 5 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i 84 (343)
|.||.+|+||.++|.||||||++...+....+.+.+.++|++|+++|||+||||..|..|.||..+|+||++..|+++++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 78999999999999999999999765656668999999999999999999999999988889999999999988999999
Q ss_pred EeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHH-----HHHHHHHHHHHcCCcceEecCC
Q 019272 85 ATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIE-----ITIGELKKLVEEGKIKYIGLSE 159 (343)
Q Consensus 85 ~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~-----~~~~~L~~l~~~G~ir~iGvs~ 159 (343)
+||+.... --+++.+++-++++|++||+||+|+|+||..+. ..++ ..++.+++++++|+||++|+|.
T Consensus 81 aTKlp~~~-------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFSf 152 (391)
T COG1453 81 ATKLPSWP-------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFSF 152 (391)
T ss_pred EeecCCcc-------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeecC
Confidence 99998542 236889999999999999999999999999987 4443 3699999999999999999999
Q ss_pred Cc-HHHHHHHhcCCCeeEecccccccccchh--hhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhccccc
Q 019272 160 AS-ASTIRRAHAVHPITAVQLEWSLWTRDAE--AEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSLPRF 236 (343)
Q Consensus 160 ~~-~~~l~~~~~~~~~~~~q~~~~~~~~~~~--~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~ 236 (343)
|+ ++.+.+++...+++++|++||.++.... .+.+.+|.++|++|+.++|+.+|-|.. ..|
T Consensus 153 Hgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~---------------~vP-- 215 (391)
T COG1453 153 HGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLY---------------NVP-- 215 (391)
T ss_pred CCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCccc---------------CCC--
Confidence 96 5788999999999999999999998644 389999999999999999999987661 122
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhcCC--C-CCHHHHHHHHhh
Q 019272 237 QAENLEHNKKLFERVNEIAAKKG--CTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSV--K-LTSEEIAELESI 311 (343)
Q Consensus 237 ~~~~~~~~~~~~~~l~~ia~~~~--~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~~~--~-Lt~e~~~~l~~~ 311 (343)
+++++++++++ .||+.+|+||++++|.|+++++|+++++|++||++.++. + ||++|++.|.++
T Consensus 216 ------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v 283 (391)
T COG1453 216 ------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKV 283 (391)
T ss_pred ------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 37788888875 689999999999999999999999999999999998863 3 999999888887
Q ss_pred hcc
Q 019272 312 ASA 314 (343)
Q Consensus 312 ~~~ 314 (343)
.+.
T Consensus 284 ~~~ 286 (391)
T COG1453 284 EEI 286 (391)
T ss_pred HHH
Confidence 653
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.87 E-value=3.2e-05 Score=66.80 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcC--CCeeEecccccccccchhhhhHHHHHHhCCeEEecc
Q 019272 136 IEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAV--HPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 136 ~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~ 207 (343)
+.++|+.|++++.+|+|..||+|.|++.+++++++. ..+..+|+...-.+.-+ .++.++|.+++|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 346899999999999999999999999999999987 45677788766666543 589999999999999876
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.88 E-value=2.8 Score=38.83 Aligned_cols=155 Identities=13% Similarity=0.053 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLK 115 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~ 115 (343)
+.++..+.++.+.+.|++.|+.--.-........+ +++++... ++-|.-+... .++.+.. ..+-+.|+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v-~~lr~~~g-~~~l~vD~n~---------~~~~~~A-~~~~~~l~ 201 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERI-RAIREAAP-DARLRVDANQ---------GWTPEEA-VELLRELA 201 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHH-HHHHHhCC-CCeEEEeCCC---------CcCHHHH-HHHHHHHH
Confidence 55667788888999999999975311110122233 33433222 5566666532 2344432 34445556
Q ss_pred hcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEeccccccccc-chhhhhH
Q 019272 116 RLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAEIV 193 (343)
Q Consensus 116 rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ll 193 (343)
++++++ +-.|-+. +-++.+.+|++...|. ..|=+-++.+.++++++....+.+|+..+.+-. ..-.++.
T Consensus 202 ~~~l~~-----iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~ 272 (316)
T cd03319 202 ELGVEL-----IEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIA 272 (316)
T ss_pred hcCCCE-----EECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHH
Confidence 655444 3444332 2366777888877666 345556788999999999889999987665432 2235789
Q ss_pred HHHHHhCCeEEecccCcc
Q 019272 194 PTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 194 ~~~~~~gi~v~a~~pl~~ 211 (343)
.+|+++|+.++..+-+..
T Consensus 273 ~~a~~~gi~~~~~~~~~~ 290 (316)
T cd03319 273 DLARAAGLKVMVGCMVES 290 (316)
T ss_pred HHHHHcCCCEEEECchhh
Confidence 999999999998765544
No 20
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=88.13 E-value=22 Score=33.44 Aligned_cols=153 Identities=12% Similarity=0.099 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCC------CchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYGP------HTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAA 109 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~------g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~ 109 (343)
+.++..+.++.+.+.|++.|-.--..+. -...+.+ +++++.-.+++.|...... .++.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~g~~~~l~vDaN~---------~~~~~~a~-- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAVGPDVDLMVDANG---------RWDLAEAI-- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhhCCCCEEEEECCC---------CCCHHHHH--
Confidence 3566777788888999998875322221 0112222 3444423345555555421 33544433
Q ss_pred HHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEeccccccccc-c
Q 019272 110 CEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-D 187 (343)
Q Consensus 110 ~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~ 187 (343)
+-+++|. ..++.++..|-+. +-++.+..+++.-.+. ..|=+.++++.++++++....+++|+.....-- .
T Consensus 207 --~~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 278 (357)
T cd03316 207 --RLARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGIT 278 (357)
T ss_pred --HHHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 3333332 2345556666443 2466677787775555 444556788999999988888999987665432 1
Q ss_pred hhhhhHHHHHHhCCeEEeccc
Q 019272 188 AEAEIVPTCRELGIGIVAYSP 208 (343)
Q Consensus 188 ~~~~ll~~~~~~gi~v~a~~p 208 (343)
.-.++...|+++|+.++..+-
T Consensus 279 ~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 279 EAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHcCCeEeccCC
Confidence 235799999999999887653
No 21
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=85.63 E-value=3.8 Score=39.07 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhc
Q 019272 38 SDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRL 117 (343)
Q Consensus 38 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rL 117 (343)
.....++++|++.|++++|||.+.- ....+.... .+..+.+..-+|..+ ..+--.+...+++--+
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~a---~~Agit~v~~~G~dP-------Gi~nv~a~~a~~~~~~-- 143 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEE---PPWKLDEEA---KKAGITAVLGCGFDP-------GITNVLAAYAAKELFD-- 143 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHHH---HHcCeEEEcccCcCc-------chHHHHHHHHHHHhhc--
Confidence 4456899999999999999998765 222222222 345667777777652 3333333333333332
Q ss_pred CCCcccEEEecCCCCC
Q 019272 118 DVDYIDLYYQHRIDTK 133 (343)
Q Consensus 118 g~d~iDl~~lH~~~~~ 133 (343)
.+++||+|..+.|++.
T Consensus 144 ~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 EIESIDIYVGGLGEHG 159 (389)
T ss_pred cccEEEEEEecCCCCC
Confidence 5899999999999776
No 22
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=83.46 E-value=22 Score=32.93 Aligned_cols=132 Identities=11% Similarity=0.015 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---cC-----CCCCC----chHHHHHHHhhcC---CCCCEEEEeecCcccCCCCCCCC
Q 019272 36 PESDMIALIHHAIDNGITFLDT---SD-----VYGPH----TNEILLGKALKGG---YRERVELATKFGIINEDGQFLYR 100 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DT---A~-----~Yg~g----~sE~~lG~al~~~---~R~~~~i~tK~~~~~~~~~~~~~ 100 (343)
+.++..+..+.+.+.|+..||- .+ .||.| ..-+.+.+.++.. ...++-|+.|+...+.
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC-------
Confidence 5677777778888999999993 23 36655 3345555555442 2225778889764321
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHH---HHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCeeE
Q 019272 101 GDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEI---TIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITA 176 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~---~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~ 176 (343)
+.+. ...+-+.|+..| +|.+.+|.-........ -|+...++++.-.|--||... .++++.+++++....+.
T Consensus 146 -~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~Dg 220 (312)
T PRK10550 146 -SGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDA 220 (312)
T ss_pred -CchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCE
Confidence 1122 245666677777 57778896433222211 267777777776777787776 47788888887777777
Q ss_pred ecc
Q 019272 177 VQL 179 (343)
Q Consensus 177 ~q~ 179 (343)
+++
T Consensus 221 Vmi 223 (312)
T PRK10550 221 VMI 223 (312)
T ss_pred EEE
Confidence 766
No 23
>PRK07945 hypothetical protein; Provisional
Probab=82.87 E-value=28 Score=32.62 Aligned_cols=150 Identities=15% Similarity=0.115 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCCCC-----CchHHHHHHHh------hcCCCCCEEEEeecCcccCCCCCCCCCCHHHH
Q 019272 38 SDMIALIHHAIDNGITFLDTSDVYGP-----HTNEILLGKAL------KGGYRERVELATKFGIINEDGQFLYRGDPAYV 106 (343)
Q Consensus 38 ~~~~~~l~~A~~~Gin~~DTA~~Yg~-----g~sE~~lG~al------~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i 106 (343)
....++++.|.+.|+..+=.++|... +-+...+-..+ ++.-.+ |--+.|.-.. ...+.+.+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~---I~Il~GiE~d---~~~~g~~~~~ 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAP---FRILTGIEVD---ILDDGSLDQE 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCC---ceEEEEeEec---ccCCCCcchh
Confidence 44678999999999998877776421 11222222222 221122 2223332210 0011122222
Q ss_pred HHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCC---------------CcHHHH-HHHhc
Q 019272 107 RAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSE---------------ASASTI-RRAHA 170 (343)
Q Consensus 107 ~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~---------------~~~~~l-~~~~~ 170 (343)
++.|++ .||+ +.-+|+... .+.++..+.|.++.+.+.+.-+|=-. +..+.+ +.+.+
T Consensus 185 ----~~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e 256 (335)
T PRK07945 185 ----PELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACRE 256 (335)
T ss_pred ----HHHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHH
Confidence 333443 5776 778898643 23456678888888888877776321 111222 22222
Q ss_pred CCCeeEecccccccccchhhhhHHHHHHhCCeE
Q 019272 171 VHPITAVQLEWSLWTRDAEAEIVPTCRELGIGI 203 (343)
Q Consensus 171 ~~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v 203 (343)
... .+.++-+.+...+...++..|++.|+.+
T Consensus 257 ~g~--~lEINt~~~r~~P~~~il~~a~e~G~~v 287 (335)
T PRK07945 257 HGT--AVEINSRPERRDPPTRLLRLALDAGCLF 287 (335)
T ss_pred hCC--EEEEeCCCCCCCChHHHHHHHHHcCCeE
Confidence 221 1222222222334457888888888865
No 24
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=81.66 E-value=39 Score=30.28 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLK 115 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~ 115 (343)
+.++..+.++.+.+.|++.|-.--.-.. ..+...=+++++...+++.|.-... ..++.+...+- -+.|+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~-~~d~~~v~~vr~~~g~~~~l~vDan---------~~~~~~~a~~~-~~~l~ 153 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDP-ARDVAVVAALREAVGDDAELRVDAN---------RGWTPKQAIRA-LRALE 153 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCH-HHHHHHHHHHHHhcCCCCEEEEeCC---------CCcCHHHHHHH-HHHHH
Confidence 4466677788889999998875421110 1112222344442334554433332 13454443332 23445
Q ss_pred hcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEeccccccccc-chhhhhH
Q 019272 116 RLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAEIV 193 (343)
Q Consensus 116 rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ll 193 (343)
.++ +.++..|-+. +-++.+.++++.-.+. ..|=+-++...++++++...++++|+..+..-. ..-.++.
T Consensus 154 ~~~-----i~~iEeP~~~----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~ 224 (265)
T cd03315 154 DLG-----LDYVEQPLPA----DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVL 224 (265)
T ss_pred hcC-----CCEEECCCCc----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHH
Confidence 544 4445555433 2356677777776555 445556788899999888888999988766542 2235799
Q ss_pred HHHHHhCCeEEecccCccc
Q 019272 194 PTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 194 ~~~~~~gi~v~a~~pl~~G 212 (343)
..|+++|+.++..+.+.++
T Consensus 225 ~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 225 AVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHcCCcEEecCccchH
Confidence 9999999999988665543
No 25
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=80.78 E-value=45 Score=30.43 Aligned_cols=153 Identities=12% Similarity=0.081 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---cCCCCC-----CchHHHHHHHhhcCCCC-CEEEEeecCcccCCCCCCCCCCHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDT---SDVYGP-----HTNEILLGKALKGGYRE-RVELATKFGIINEDGQFLYRGDPAYV 106 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DT---A~~Yg~-----g~sE~~lG~al~~~~R~-~~~i~tK~~~~~~~~~~~~~~s~~~i 106 (343)
+.++..+..+.+.+.|+..||. ++++.. |.+.+.+-+.++...+. ++-|..|+.+. . +.+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~---------~--~~~ 168 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN---------V--TDI 168 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC---------c--hhH
Confidence 4677788888888999999986 222211 13566666666553222 67788898643 1 122
Q ss_pred HHHHHHHHHhcCCCcccEEE------ecCCC--C-----------CCCHHHHHHHHHHHHHcCCcceEecCCC-cHHHHH
Q 019272 107 RAACEASLKRLDVDYIDLYY------QHRID--T-----------KVPIEITIGELKKLVEEGKIKYIGLSEA-SASTIR 166 (343)
Q Consensus 107 ~~~~~~SL~rLg~d~iDl~~------lH~~~--~-----------~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~ 166 (343)
..+-+.++..|.|.|++.- +|.-. + .....-.++.+.++++.=.|.-||+... +++.+.
T Consensus 169 -~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~ 247 (296)
T cd04740 169 -VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDAL 247 (296)
T ss_pred -HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 3344567788987776631 11100 0 0001124677777777656888888885 788888
Q ss_pred HHhcCCCeeEecccccccc-c----chhhhhHHHHHHhCC
Q 019272 167 RAHAVHPITAVQLEWSLWT-R----DAEAEIVPTCRELGI 201 (343)
Q Consensus 167 ~~~~~~~~~~~q~~~~~~~-~----~~~~~ll~~~~~~gi 201 (343)
+++... .+.+|+-=.++. + ....++.++.+++|.
T Consensus 248 ~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 248 EFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 888754 577776322222 1 122466677777764
No 26
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=79.92 E-value=14 Score=32.86 Aligned_cols=106 Identities=15% Similarity=0.096 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC-CcceEecCCCcHHHHHHHhcCCCeeEec
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEG-KIKYIGLSEASASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q 178 (343)
.++.+...+ +-+.|..+|+++|.+-..-.+......++.++.++.+.+.+ .++...++....+.++.+.+.. ++.++
T Consensus 15 ~~s~e~~~~-i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~ 92 (265)
T cd03174 15 TFSTEDKLE-IAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVR 92 (265)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEE
Confidence 456665544 44458889988888766544322111245688888888888 5776677765566777776654 45555
Q ss_pred ccccccc--------cc------hhhhhHHHHHHhCCeEEecc
Q 019272 179 LEWSLWT--------RD------AEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 179 ~~~~~~~--------~~------~~~~ll~~~~~~gi~v~a~~ 207 (343)
+.+..-+ +. .-.+.+.+++++|+.+...-
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 5544331 11 11367888999998776654
No 27
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=79.86 E-value=41 Score=30.25 Aligned_cols=101 Identities=20% Similarity=0.116 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEE-ecCCCCC-CCHH----HHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCe
Q 019272 101 GDPAYVRAACEASLKRLDVDYIDLYY-QHRIDTK-VPIE----ITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPI 174 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rLg~d~iDl~~-lH~~~~~-~~~~----~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 174 (343)
.+.+.+.+..++.+ +-|-|+||+=- --+|+.. .+.+ .+...++.+++.-.+. +.+-++.++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 46666666655554 55889999853 2344332 1222 2344456666653333 78889999999999987532
Q ss_pred eEecccccccccchhhhhHHHHHHhCCeEEecc
Q 019272 175 TAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 175 ~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~ 207 (343)
-+ +..+.... ..++++.++++|..++.+.
T Consensus 99 iI--Ndisg~~~--~~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 99 II--NDVSGGSD--DPAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred EE--EeCCCCCC--ChHHHHHHHHcCCCEEEEC
Confidence 22 22333322 1578999999999999954
No 28
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=78.70 E-value=37 Score=30.57 Aligned_cols=133 Identities=16% Similarity=0.199 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcC--CCeeEecc
Q 019272 102 DPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAV--HPITAVQL 179 (343)
Q Consensus 102 s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~ 179 (343)
+.+.+.+..++.. .-|-|+||+=.= .......+.+...++.+++.-.+ -|-+-+++++.++++++. ...-++
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iIN-- 96 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLIN-- 96 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEE--
Confidence 5556655555543 668999998532 22222234455566666554222 478888999999999886 332222
Q ss_pred cccccccchhhhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhccccchhhhhHHHHHHHHHHHHHHHHhC
Q 019272 180 EWSLWTRDAEAEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSLPRFQAENLEHNKKLFERVNEIAAKKG 259 (343)
Q Consensus 180 ~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~~ 259 (343)
..+..... ..++++.++++|+.+++..--..|. |. ..+...+.++.+.+.|.++|
T Consensus 97 sIs~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~--------------------P~----t~~~~~~~l~~~v~~a~~~G 151 (261)
T PRK07535 97 SVSAEGEK-LEVVLPLVKKYNAPVVALTMDDTGI--------------------PK----DAEDRLAVAKELVEKADEYG 151 (261)
T ss_pred eCCCCCcc-CHHHHHHHHHhCCCEEEEecCCCCC--------------------CC----CHHHHHHHHHHHHHHHHHcC
Confidence 22332211 3478999999999999865322331 10 01223455566677778888
Q ss_pred CCHHHH
Q 019272 260 CTPSQL 265 (343)
Q Consensus 260 ~s~~q~ 265 (343)
+++.++
T Consensus 152 I~~~~I 157 (261)
T PRK07535 152 IPPEDI 157 (261)
T ss_pred CCHhHE
Confidence 876554
No 29
>PRK08392 hypothetical protein; Provisional
Probab=77.61 E-value=47 Score=28.81 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHcCCCeEeCcCCCCCC---chHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 019272 39 DMIALIHHAIDNGITFLDTSDVYGPH---TNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLK 115 (343)
Q Consensus 39 ~~~~~l~~A~~~Gin~~DTA~~Yg~g---~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~ 115 (343)
...++++.|.+.|++.|=.++|.-.. .-+..+-+.-+-..+.++ .-..|.-. +..++. .+..++.++
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i--~il~GiE~-------~~~~~~-~~~~~~~~~ 84 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEI--VVLAGIEA-------NITPNG-VDITDDFAK 84 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCc--eEEEeEEe-------eecCCc-chhHHHHHh
Confidence 36688999999999999777664211 011122111111111222 22333211 001111 223334455
Q ss_pred hcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCC-------C-cHHHHHHHh----cCC-CeeEeccccc
Q 019272 116 RLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSE-------A-SASTIRRAH----AVH-PITAVQLEWS 182 (343)
Q Consensus 116 rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-------~-~~~~l~~~~----~~~-~~~~~q~~~~ 182 (343)
+ .||+ +.-+|........++-.+.+.++.+.|.+.-+|=-. . ..+.+++++ +.. .+.++
T Consensus 85 ~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiN----- 156 (215)
T PRK08392 85 K--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEIS----- 156 (215)
T ss_pred h--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEe-----
Confidence 3 4666 777894433333456778888888888766554321 1 112333322 222 22322
Q ss_pred ccccchhhhhHHHHHHhCCeEE
Q 019272 183 LWTRDAEAEIVPTCRELGIGIV 204 (343)
Q Consensus 183 ~~~~~~~~~ll~~~~~~gi~v~ 204 (343)
-..+.+...++..|++.|+.++
T Consensus 157 t~~~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 157 SRYRVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred CCCCCCCHHHHHHHHHcCCEEE
Confidence 2122334578999999997653
No 30
>PRK08609 hypothetical protein; Provisional
Probab=75.60 E-value=25 Score=35.65 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=79.7
Q ss_pred HHHHHHHHHHcCCCeEeCcCCCC-----CCchHHHHHHH------hhc-CCCCCEEEEeecCcccCCCCCCCCCCHHHHH
Q 019272 40 MIALIHHAIDNGITFLDTSDVYG-----PHTNEILLGKA------LKG-GYRERVELATKFGIINEDGQFLYRGDPAYVR 107 (343)
Q Consensus 40 ~~~~l~~A~~~Gin~~DTA~~Yg-----~g~sE~~lG~a------l~~-~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~ 107 (343)
..++++.|.+.|+.+|=.++|+. .|.+...+-.. +++ ...=++++..=+.... +.+ .
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~-------~g~----~ 419 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILP-------DGS----L 419 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC-------Ccc----h
Confidence 55699999999999999888862 22233333322 222 1111233333332221 111 2
Q ss_pred HHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCC---------Cc--HHHHHHHhcCCCeeE
Q 019272 108 AACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSE---------AS--ASTIRRAHAVHPITA 176 (343)
Q Consensus 108 ~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~---------~~--~~~l~~~~~~~~~~~ 176 (343)
.-.+..|+. .||+ +.-+|++.. .+.+++.+.+.++.+.|.+.-||=-. +. .+.+.+++.... .+
T Consensus 420 d~~~~~L~~--~D~v-I~SvH~~~~-~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~~ 494 (570)
T PRK08609 420 DYDDEVLAE--LDYV-IAAIHSSFS-QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-TA 494 (570)
T ss_pred hhcHHHHHh--hCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-CE
Confidence 222334554 4776 778897533 34567788888888888876665332 11 122222222122 23
Q ss_pred ecccccccccchhhhhHHHHHHhCCeE
Q 019272 177 VQLEWSLWTRDAEAEIVPTCRELGIGI 203 (343)
Q Consensus 177 ~q~~~~~~~~~~~~~ll~~~~~~gi~v 203 (343)
+|++-+.+.......++..|.+.|+.+
T Consensus 495 lEINa~~~r~~~~~~~~~~~~e~Gv~i 521 (570)
T PRK08609 495 LELNANPNRLDLSAEHLKKAQEAGVKL 521 (570)
T ss_pred EEEcCCccccCccHHHHHHHHHcCCEE
Confidence 455444433333457888999999864
No 31
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=75.21 E-value=62 Score=29.00 Aligned_cols=103 Identities=17% Similarity=0.082 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEE-ecCCCCC-----CCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCe
Q 019272 101 GDPAYVRAACEASLKRLDVDYIDLYY-QHRIDTK-----VPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPI 174 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rLg~d~iDl~~-lH~~~~~-----~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 174 (343)
.+.+.+.+..++.+ .-|-|+||+=- --+|+.. ...+.+...++.+++.-.+ -|.+.+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 46677766666654 66889999853 2334321 1123355666666655233 388999999999999988632
Q ss_pred eEecccccccccchhhhhHHHHHHhCCeEEecccC
Q 019272 175 TAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 175 ~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl 209 (343)
-+ +..+.... ..++++.++++|..++.+..-
T Consensus 99 iI--Ndis~~~~--~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 99 II--NDVSGGRG--DPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred EE--EeCCCCCC--ChHHHHHHHHcCCCEEEECcC
Confidence 22 22233221 157899999999999887643
No 32
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=74.79 E-value=8.4 Score=33.43 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=46.2
Q ss_pred HHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHHhcCCCeeEecccc
Q 019272 113 SLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEW 181 (343)
Q Consensus 113 SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 181 (343)
.+..+|.||+=+++........+.+.+ +.+.+.. .+.++.+||. |.+++.+.++++...++++|++-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 345699999999754443333444433 3333322 3568899996 78899999999999999999864
No 33
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=72.88 E-value=19 Score=30.76 Aligned_cols=150 Identities=20% Similarity=0.198 Sum_probs=92.2
Q ss_pred HHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHH----------
Q 019272 42 ALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACE---------- 111 (343)
Q Consensus 42 ~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~---------- 111 (343)
++|..-++-|-+.+|-.-..| .+-+.|++. + ++.. .| ...+.+.+.++++
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG------~LL~~L~~~-k-~v~g---~G---------vEid~~~v~~cv~rGv~Viq~Dl 64 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG------ELLAYLKDE-K-QVDG---YG---------VEIDPDNVAACVARGVSVIQGDL 64 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch------HHHHHHHHh-c-CCeE---EE---------EecCHHHHHHHHHcCCCEEECCH
Confidence 456667778888888765444 233555441 1 1111 11 1345555665544
Q ss_pred -HHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHh--cCCCeeEecccccccccc-
Q 019272 112 -ASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAH--AVHPITAVQLEWSLWTRD- 187 (343)
Q Consensus 112 -~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~--~~~~~~~~q~~~~~~~~~- 187 (343)
+.|..+.-+.+|.+.+..-- .........|+++.+-|+---+++.||.-+..+.-+ .-.-+.+-.++|+-++..
T Consensus 65 d~gL~~f~d~sFD~VIlsqtL--Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPN 142 (193)
T PF07021_consen 65 DEGLADFPDQSFDYVILSQTL--QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPN 142 (193)
T ss_pred HHhHhhCCCCCccEEehHhHH--HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCC
Confidence 44555555555655554321 112334556788888899888999999876655433 333455667888776642
Q ss_pred ----hhhhhHHHHHHhCCeEEecccCcccc
Q 019272 188 ----AEAEIVPTCRELGIGIVAYSPLGRGF 213 (343)
Q Consensus 188 ----~~~~ll~~~~~~gi~v~a~~pl~~G~ 213 (343)
.-.++.++|++.|+.|.-..++.++.
T Consensus 143 ih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 143 IHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred cccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 12589999999999999999998764
No 34
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=71.42 E-value=2.2 Score=39.96 Aligned_cols=54 Identities=17% Similarity=0.337 Sum_probs=36.6
Q ss_pred cCCcceEecCCCcHHHHHHHhcCCC-eeEecccccccccchhhhhHHHHHHhCCe
Q 019272 149 EGKIKYIGLSEASASTIRRAHAVHP-ITAVQLEWSLWTRDAEAEIVPTCRELGIG 202 (343)
Q Consensus 149 ~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~~~~~~~~~~~ll~~~~~~gi~ 202 (343)
-|+||++||--++++.+.++.+... -+..+.+..++....+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 4999999999999999988877632 23333344443333345677777777765
No 35
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=71.07 E-value=1e+02 Score=29.63 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHH-cCCCeEeCcCCCCCCch-HHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHH
Q 019272 36 PESDMIALIHHAID-NGITFLDTSDVYGPHTN-EILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEAS 113 (343)
Q Consensus 36 ~~~~~~~~l~~A~~-~Gin~~DTA~~Yg~g~s-E~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~S 113 (343)
+.++..+.++.+.+ .|++.|=.--.-.+... .+.+ +++++.- .++.|..-.. ..++.+. ..+-
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v-~avRea~-~~~~l~vDaN---------~~w~~~~----A~~~ 232 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAV-KALAEAF-PGARLRLDPN---------GAWSLET----AIRL 232 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHH-HHHHHhC-CCCcEEEeCC---------CCcCHHH----HHHH
Confidence 45666666777775 69998754321011011 1222 3343322 2333333321 1344443 3333
Q ss_pred HHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEeccccccccc-chhhh
Q 019272 114 LKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAE 191 (343)
Q Consensus 114 L~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ 191 (343)
+++|. - ++.++-.|-+ -++.+.+|++...+. +.|-|-++..+++.+++...++++|......-- ..-.+
T Consensus 233 ~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~k 303 (395)
T cd03323 233 AKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVR 303 (395)
T ss_pred HHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHH
Confidence 44553 2 6666666653 377888888887665 667677888899999988889999887665432 12358
Q ss_pred hHHHHHHhCCeEEecccC
Q 019272 192 IVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 192 ll~~~~~~gi~v~a~~pl 209 (343)
+.+.|+++||.+..++..
T Consensus 304 ia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 304 VAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHcCCeEEEecCc
Confidence 999999999999887754
No 36
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=70.20 E-value=92 Score=28.85 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCC----chHHHHHHHhhcC-CCCCEEEEeecCcccCCCCCCCCCCHHHHHHH
Q 019272 35 KPESDMIALIHHAIDNGITFLDTSDVYGPH----TNEILLGKALKGG-YRERVELATKFGIINEDGQFLYRGDPAYVRAA 109 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g----~sE~~lG~al~~~-~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~ 109 (343)
.+.++..++++.+.+.|++.|.-.. |.- .-.+++- .+++. ...++.|+|-... +.+
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~-~i~~~~~~~~i~itTNG~l---------------l~~- 109 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIA-ALAALPGIRDLALTTNGYL---------------LAR- 109 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHH-HHHhcCCCceEEEEcCchh---------------HHH-
Confidence 4788899999999999998876432 110 1122222 23321 1235666655321 112
Q ss_pred HHHHHHhcCCCcccEEEecCCCC--------CCCHHHHHHHHHHHHHcCC----cceEecCCCcHHHHHHHhc---CCCe
Q 019272 110 CEASLKRLDVDYIDLYYQHRIDT--------KVPIEITIGELKKLVEEGK----IKYIGLSEASASTIRRAHA---VHPI 174 (343)
Q Consensus 110 ~~~SL~rLg~d~iDl~~lH~~~~--------~~~~~~~~~~L~~l~~~G~----ir~iGvs~~~~~~l~~~~~---~~~~ 174 (343)
.-+.|...|++.|- +-||..++ ...++.++++++.+++.|. |..+.+...+.+.+.++++ ..++
T Consensus 110 ~~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv 188 (331)
T PRK00164 110 RAAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGI 188 (331)
T ss_pred HHHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 22345555665443 34454432 2357889999999999986 3344443444445444433 3344
Q ss_pred eEecccccccccc---------hhhhhHHHHHHhCCeEEec
Q 019272 175 TAVQLEWSLWTRD---------AEAEIVPTCRELGIGIVAY 206 (343)
Q Consensus 175 ~~~q~~~~~~~~~---------~~~~ll~~~~~~gi~v~a~ 206 (343)
.+.-++|.++... ...++++..+++|+.+...
T Consensus 189 ~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 229 (331)
T PRK00164 189 QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQPR 229 (331)
T ss_pred eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccccc
Confidence 4444455543321 1246788888877654443
No 37
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=70.18 E-value=35 Score=30.67 Aligned_cols=67 Identities=9% Similarity=-0.000 Sum_probs=40.2
Q ss_pred HHHHHHHcCCcceEecC-CCcHHHHHHHhcCC--CeeEecccccccccchhhhhHHHHHHhCCeEEecccC
Q 019272 142 ELKKLVEEGKIKYIGLS-EASASTIRRAHAVH--PITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 142 ~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl 209 (343)
.|.+-.++|+. -+|+- ..+...+.+++... .+.++-.+..+++...-..++..|+..|+..++.-|-
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 35555556774 45542 22223344444443 4444555777777654567888899999988887764
No 38
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=67.63 E-value=49 Score=28.88 Aligned_cols=87 Identities=10% Similarity=0.050 Sum_probs=60.7
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEeccccccccc-chhhhhHHHHHHh
Q 019272 122 IDLYYQHRIDTKVPIEITIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAEIVPTCREL 199 (343)
Q Consensus 122 iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ll~~~~~~ 199 (343)
.++.++-.|-+.. -++.+.+|.+...+. ..+=|.++.+.+..++....++++|+..+.+-. ..-.++..+|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 4566666665433 356677777777665 445556778888888888888999987766532 1225789999999
Q ss_pred CCeEEecccCccc
Q 019272 200 GIGIVAYSPLGRG 212 (343)
Q Consensus 200 gi~v~a~~pl~~G 212 (343)
|+.++..+.+..+
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999998776543
No 39
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=67.01 E-value=14 Score=32.12 Aligned_cols=67 Identities=22% Similarity=0.242 Sum_probs=44.6
Q ss_pred HHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHHhcCCCeeEeccccc
Q 019272 114 LKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEWS 182 (343)
Q Consensus 114 L~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 182 (343)
+..+|.|++=+++........+.+. .+.+.... .+.+..+||. |-+++.+.++++...++++|++-+
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~~-a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPEQ-AAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHHH-HHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 3468999999874443333333333 33332222 3568899997 568889999999999999998643
No 40
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=66.09 E-value=28 Score=32.97 Aligned_cols=211 Identities=19% Similarity=0.101 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHH---HHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLG---KALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEA 112 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG---~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~ 112 (343)
+.++..+.|+.|.+.|++.+=|+=+...+..+..+. +.++......+.|..=+.+..-. ....+.+.+ .
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~---~lg~~~~dl-----~ 83 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLK---KLGISYDDL-----S 83 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHH---TTT-BTTBT-----H
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH---HcCCCHHHH-----H
Confidence 578899999999999999999997765433332222 22221134456666555432100 001111111 2
Q ss_pred HHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCC-eeEecccccccccch---
Q 019272 113 SLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHP-ITAVQLEWSLWTRDA--- 188 (343)
Q Consensus 113 SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~~~~~~~~--- 188 (343)
.++.||++. +=|.. ... .+.+.+|-+.|.--.+=.|+.+.+.+..+.+... ++-+..-.|.+.+..
T Consensus 84 ~~~~lGi~~---lRlD~---Gf~----~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGL 153 (357)
T PF05913_consen 84 FFKELGIDG---LRLDY---GFS----GEEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTGL 153 (357)
T ss_dssp HHHHHT-SE---EEESS---S-S----CHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-SB
T ss_pred HHHHcCCCE---EEECC---CCC----HHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCCC
Confidence 355566432 22222 122 2333344444776677778877888888877643 333333334333321
Q ss_pred ----hhhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhccccchhhhhHHHHHHHHHHHHHHHHhCCCHHH
Q 019272 189 ----EAEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSLPRFQAENLEHNKKLFERVNEIAAKKGCTPSQ 264 (343)
Q Consensus 189 ----~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q 264 (343)
-.+.=.+.++.|+.+.|+-|-..+. . |+ ..+. +|.. ++|.--+..
T Consensus 154 s~~~f~~~n~~~k~~gi~~~AFI~g~~~~-r-GP-l~~G---------LPTl-------------------E~hR~~~p~ 202 (357)
T PF05913_consen 154 SEEFFIEKNQLLKEYGIKTAAFIPGDENK-R-GP-LYEG---------LPTL-------------------EKHRNLPPY 202 (357)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEEE--SSS--B-TT-T-S-----------BSB-------------------GGGTTS-HH
T ss_pred CHHHHHHHHHHHHHCCCcEEEEecCCCcc-c-CC-ccCC---------CCcc-------------------HHHcCCCHH
Confidence 1244567789999999988754321 1 11 1111 1110 123334445
Q ss_pred HHHHHHHhcCCCeeeccCCC--cHHHHHHHHhh
Q 019272 265 LALAWVHHQGDDVCPIPGTT--KIENLNQNIKA 295 (343)
Q Consensus 265 ~al~~~l~~~~v~~~i~g~~--~~~~l~enl~a 295 (343)
+|.+.++..+.+.-|++|-. +.+.++.....
T Consensus 203 ~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 203 AAALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp HHHHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred HHHHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 57788888888889999866 44555554444
No 41
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=65.59 E-value=35 Score=27.54 Aligned_cols=63 Identities=6% Similarity=0.152 Sum_probs=46.4
Q ss_pred CCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcC--CCcccEEEecCCCCCCCHHHHHHHHHHHHHc
Q 019272 78 YRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLD--VDYIDLYYQHRIDTKVPIEITIGELKKLVEE 149 (343)
Q Consensus 78 ~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg--~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~ 149 (343)
.|=-+.|+-|+|. ...+..|++.+.++.+.+. +...|++++.......++.++.+.|..+.++
T Consensus 46 ~RlG~sVSKKvg~---------AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGK---------AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEeccccc---------chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 3555677777763 3457788888888887763 4578999999988777788887777777665
No 42
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=65.58 E-value=51 Score=29.41 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCCcccEEEecCCCCCCCHH-HHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCeeEeccccccccc
Q 019272 109 ACEASLKRLDVDYIDLYYQHRIDTKVPIE-ITIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQLEWSLWTR 186 (343)
Q Consensus 109 ~~~~SL~rLg~d~iDl~~lH~~~~~~~~~-~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~ 186 (343)
.+-+-|+++| +|.+.+|..+...... --++.+.++++.-.+.-|.... .++++++++......+.+.+---+...
T Consensus 159 ~~~~~l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 159 EWAKEVEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred HHHHHHHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 3344456667 5677777765432111 1255566666665566665554 467888888887656665442222222
Q ss_pred c-hhhhhHHHHHHhCCeE
Q 019272 187 D-AEAEIVPTCRELGIGI 203 (343)
Q Consensus 187 ~-~~~~ll~~~~~~gi~v 203 (343)
. .-.++..+|+++||.+
T Consensus 236 ~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 236 EITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCCHHHHHHHHHHCCCcc
Confidence 1 1257899999999864
No 43
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=64.76 E-value=58 Score=29.46 Aligned_cols=64 Identities=14% Similarity=0.061 Sum_probs=37.9
Q ss_pred HHHHHHcCCcceEec-CC-CcHHHHHHHhcCCCee--EecccccccccchhhhhHHHHHHhCCeEEeccc
Q 019272 143 LKKLVEEGKIKYIGL-SE-ASASTIRRAHAVHPIT--AVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSP 208 (343)
Q Consensus 143 L~~l~~~G~ir~iGv-s~-~~~~~l~~~~~~~~~~--~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~p 208 (343)
|.+..++|+. .+|+ .. -++.. .+++....+| ++-.+..+++...-..++..++..|+..++.-|
T Consensus 9 lk~~L~~G~~-~~G~~~~~~sp~~-~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp 76 (267)
T PRK10128 9 FKEGLRKGEV-QIGLWLSSTTSYM-AEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPV 76 (267)
T ss_pred HHHHHHcCCc-eEEEEecCCCcHH-HHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECC
Confidence 4455556775 3443 22 33433 3433443344 445577777765445788888888888877766
No 44
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=63.48 E-value=1.1e+02 Score=27.34 Aligned_cols=105 Identities=12% Similarity=-0.004 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCC-CeeEec
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH-PITAVQ 178 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~-~~~~~q 178 (343)
..+++.+.+.+++.++ -|-|+||+=. .|......++.-+.+..+++.-. .-|.+-+++++.++++++.. ..+ +-
T Consensus 22 ~~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~-iI 96 (252)
T cd00740 22 AEDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKC-VV 96 (252)
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCc-EE
Confidence 3467778888777775 5999999854 23322222333333333333212 24788889999999998862 212 22
Q ss_pred cccccccc-chhhhhHHHHHHhCCeEEecccC
Q 019272 179 LEWSLWTR-DAEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 179 ~~~~~~~~-~~~~~ll~~~~~~gi~v~a~~pl 209 (343)
+..+.... .....+++.++++|..++.+..-
T Consensus 97 NsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 97 NSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred EeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 33333221 11346888999999998887543
No 45
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=63.26 E-value=96 Score=26.51 Aligned_cols=145 Identities=13% Similarity=-0.007 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhc----CCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKG----GYRERVELATKFGIINEDGQFLYRGDPAYVRAACE 111 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~----~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~ 111 (343)
+++++.++++.+++.|++..|.- +..+..+++. +.+++++++-= ....+.++..+.
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~iG~~w~~gei~va~~------------~~a~~~~~~~l~ 69 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI--------EKGLMAGMGVVGKLFEDGELFLPHV------------MMSADAMLAGIK 69 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHcCCCccHHHH------------HHHHHHHHHHHH
Confidence 78899999999999998766543 2333444433 13445554111 223444555555
Q ss_pred HHHHhcCCC----cccEEEecCCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCcHHHHHHHhcCCCeeEeccccccccc
Q 019272 112 ASLKRLDVD----YIDLYYQHRIDTKVPIEITIGELKKLVEEGK-IKYIGLSEASASTIRRAHAVHPITAVQLEWSLWTR 186 (343)
Q Consensus 112 ~SL~rLg~d----~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~ 186 (343)
....++... .---+++-.+..+.+.-...-.-.-|+..|. +.++|.. -+.+.+.+.+....++++.+.+++...
T Consensus 70 ~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~-vp~e~~v~~~~~~~pd~v~lS~~~~~~ 148 (197)
T TIGR02370 70 VLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRD-VPIDTVVEKVKKEKPLMLTGSALMTTT 148 (197)
T ss_pred HHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEccccccC
Confidence 554545421 1112333333333322233333344566776 7778854 466777777777777888777665443
Q ss_pred ch-hhhhHHHHHHhCC
Q 019272 187 DA-EAEIVPTCRELGI 201 (343)
Q Consensus 187 ~~-~~~ll~~~~~~gi 201 (343)
.. -.++++.+++.|.
T Consensus 149 ~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 149 MYGQKDINDKLKEEGY 164 (197)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 22 2578888888854
No 46
>PRK13796 GTPase YqeH; Provisional
Probab=62.98 E-value=1.4e+02 Score=28.30 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=86.3
Q ss_pred ccccccccCCCCCCC----CCCHHHHHHHHHHHHHcC---CCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcc
Q 019272 19 AQGLGCMGMSAFYGP----PKPESDMIALIHHAIDNG---ITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGII 91 (343)
Q Consensus 19 ~lglG~~~~~~~~~~----~~~~~~~~~~l~~A~~~G---in~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~ 91 (343)
.+|-=|.++-. |+. ..+.++..++++..-+.- +-.+|..+.-+. -...+.+... .+.-++|.+|+-..
T Consensus 35 ~~C~RC~~l~h-y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s--~~~~L~~~~~--~kpviLViNK~DLl 109 (365)
T PRK13796 35 VYCQRCFRLKH-YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS--WIPGLHRFVG--NNPVLLVGNKADLL 109 (365)
T ss_pred eEchhhhhhhc-cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCc--hhHHHHHHhC--CCCEEEEEEchhhC
Confidence 45555665532 332 235667777777776655 556786664432 2333444332 45678899998754
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHH
Q 019272 92 NEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIR 166 (343)
Q Consensus 92 ~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~ 166 (343)
.. ....+.+.+-++.-.+.+|....|++.+..-. ....+++++.+.+..+.+.+-.+|.+|..-..+-
T Consensus 110 ~~------~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLi 177 (365)
T PRK13796 110 PK------SVKKNKVKNWLRQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLI 177 (365)
T ss_pred CC------ccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHH
Confidence 21 22455666666666777776555777765543 3457888888888877788999999998876543
No 47
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=62.64 E-value=1.4e+02 Score=28.18 Aligned_cols=147 Identities=10% Similarity=0.060 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLK 115 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~ 115 (343)
+.++..+.++.+.+.|++.|=.-- .+.+ +++++.-.+++.|..-.. ..++.+.. .+-++
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv-------~~~v-~avre~~G~~~~l~vDaN---------~~w~~~~A----~~~~~ 184 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL-------PKLF-EAVREKFGFEFHLLHDVH---------HRLTPNQA----ARFGK 184 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH-------HHHH-HHHHhccCCCceEEEECC---------CCCCHHHH----HHHHH
Confidence 445566677777889998774311 2222 334432233444433221 13454432 22333
Q ss_pred hcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEeccccccccc-chhhhhH
Q 019272 116 RLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAEIV 193 (343)
Q Consensus 116 rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ll 193 (343)
.|. .+++.++-.|-+. +-++.+.+|++...+. ..|=|-++...++.++....++++|+.....-- ..-.++.
T Consensus 185 ~l~--~~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia 258 (361)
T cd03322 185 DVE--PYRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIA 258 (361)
T ss_pred Hhh--hcCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHH
Confidence 332 2466666666543 2367788888887665 677788899999999998889999987765432 1235899
Q ss_pred HHHHHhCCeEEecccC
Q 019272 194 PTCRELGIGIVAYSPL 209 (343)
Q Consensus 194 ~~~~~~gi~v~a~~pl 209 (343)
+.|+++|+.++.++..
T Consensus 259 ~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 259 DLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHHHcCCeeeccCCC
Confidence 9999999999876543
No 48
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=61.83 E-value=44 Score=29.01 Aligned_cols=83 Identities=17% Similarity=0.229 Sum_probs=53.2
Q ss_pred HHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCC-cceEecC-CCcHHHHHHHhcCCCeeEecccccccccchhhh
Q 019272 114 LKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGK-IKYIGLS-EASASTIRRAHAVHPITAVQLEWSLWTRDAEAE 191 (343)
Q Consensus 114 L~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ 191 (343)
...+|.||+-+++.-........ +...++.+.-. ++.+||. |.+.+.+.++++...++.+|++-.. ..+
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs~----~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~~ 88 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVSP----EQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DPE 88 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCCH----HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CHH
Confidence 35689999887666532233333 33334444433 8899997 4678889999999999999985442 235
Q ss_pred hHHHHHHhC-CeEEe
Q 019272 192 IVPTCRELG-IGIVA 205 (343)
Q Consensus 192 ll~~~~~~g-i~v~a 205 (343)
.++..++.. +.|+-
T Consensus 89 ~~~~l~~~~~~~v~k 103 (208)
T COG0135 89 YIDQLKEELGVPVIK 103 (208)
T ss_pred HHHHHHhhcCCceEE
Confidence 666666554 55443
No 49
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=60.13 E-value=1.7e+02 Score=28.20 Aligned_cols=143 Identities=16% Similarity=0.121 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHcCCCeE-eCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccC---CCCCCCCCCHHHHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFL-DTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINE---DGQFLYRGDPAYVRAACE 111 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~-DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~---~~~~~~~~s~~~i~~~~~ 111 (343)
+.+.-.+-++.|++.|-..+ |-+ ..|+ -..+=-..|+. ..+-|-|= ..... ......+.+.+.+.+.++
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLS-tGgd--l~~iR~~il~~---s~vpvGTV-PiYqa~~~~~~~~~~mt~d~~~~~ie 147 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLS-TGGD--LDEIRKAILDA---VPVPVGTV-PIYQAAEKVHGAVEDMDEDDMFRAIE 147 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCCC--HHHHHHHHHHc---CCCCccCc-cHHHHHHHhcCChhhCCHHHHHHHHH
Confidence 44444455899999997644 444 3342 22222222322 12222221 10000 001224677888888888
Q ss_pred HHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEecccccccccchhhh
Q 019272 112 ASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWTRDAEAE 191 (343)
Q Consensus 112 ~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ 191 (343)
+..+ |-+|.+-||.- -+.+.++.++++|+ ..|+-+-....+...+.... .-|++...+ .+
T Consensus 148 ~qa~----dGVDfmTiH~G-------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~~------~ENPlye~f-D~ 207 (423)
T TIGR00190 148 KQAK----DGVDFMTIHAG-------VLLEYVERLKRSGR--ITGIVSRGGAILAAWMLHHH------KENPLYKNF-DY 207 (423)
T ss_pred HHHH----hCCCEEEEccc-------hhHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHcC------CcCchHHHH-HH
Confidence 7776 45888999984 35788889999885 66777666555544433221 225555433 47
Q ss_pred hHHHHHHhCCeEEe
Q 019272 192 IVPTCRELGIGIVA 205 (343)
Q Consensus 192 ll~~~~~~gi~v~a 205 (343)
+++.|++++|.+--
T Consensus 208 lLeI~~~yDVtlSL 221 (423)
T TIGR00190 208 ILEIAKEYDVTLSL 221 (423)
T ss_pred HHHHHHHhCeeeec
Confidence 99999999998753
No 50
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=59.92 E-value=1.1e+02 Score=26.14 Aligned_cols=151 Identities=13% Similarity=0.063 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhc----CCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKG----GYRERVELATKFGIINEDGQFLYRGDPAYVRAACE 111 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~----~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~ 111 (343)
++.++.+++..+++.|+...|.- +..+..+++. ..+++++++-= ....+.++..+.
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~vG~~w~~~~i~va~e------------~~as~~~~~~l~ 68 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDII--------EEGLAPGMDIVGDKYEEGEIFVPEL------------LMAADAMKAGLD 68 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHccCCeeHHHH------------HHHHHHHHHHHH
Confidence 78889999999999997655432 2333444433 13445554321 123344444444
Q ss_pred HHHHhcCCCc---ccEEEecCCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCcHHHHHHHhcCCCeeEecccccccccc
Q 019272 112 ASLKRLDVDY---IDLYYQHRIDTKVPIEITIGELKKLVEEGK-IKYIGLSEASASTIRRAHAVHPITAVQLEWSLWTRD 187 (343)
Q Consensus 112 ~SL~rLg~d~---iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 187 (343)
.....+.... ---+++-.+..+.+.-...-.-.-|+..|. +.++| .+.+.+.+.+.+....++++-+.++.-...
T Consensus 69 ~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~ 147 (201)
T cd02070 69 LLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTTM 147 (201)
T ss_pred HHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccH
Confidence 4444443222 113444444433332233333334566776 56778 556777777777777777777766543332
Q ss_pred -hhhhhHHHHHHhC----CeEEecc
Q 019272 188 -AEAEIVPTCRELG----IGIVAYS 207 (343)
Q Consensus 188 -~~~~ll~~~~~~g----i~v~a~~ 207 (343)
.-.++++.+++.+ +.++..+
T Consensus 148 ~~~~~~i~~lr~~~~~~~~~i~vGG 172 (201)
T cd02070 148 GGMKEVIEALKEAGLRDKVKVMVGG 172 (201)
T ss_pred HHHHHHHHHHHHCCCCcCCeEEEEC
Confidence 1256788888775 4555433
No 51
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=59.62 E-value=57 Score=30.24 Aligned_cols=107 Identities=14% Similarity=0.122 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhc
Q 019272 38 SDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRL 117 (343)
Q Consensus 38 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rL 117 (343)
..-+++|+.+-+.|| .+|.|.. |++.+=+++.- .+..+|+|......- .++.+.--.++++...++=
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~~--s~~PviaSHSN~~al-----~~h~RNl~D~qlkaI~~~g 215 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSHL-----SDKTFWDVLDL--SKAPVVASHSNARAL-----VDHPRNLSDEQLKAIAETG 215 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHhc--cCCceEEecCCchhc-----cCCCCCCCHHHHHHHHhcC
Confidence 346899999999999 9999987 66777777754 445677766543321 1222222234555555555
Q ss_pred CCCcccEEEecCC-----CCCCCHHHHHHHHHHHHHcCCcceEecCC
Q 019272 118 DVDYIDLYYQHRI-----DTKVPIEITIGELKKLVEEGKIKYIGLSE 159 (343)
Q Consensus 118 g~d~iDl~~lH~~-----~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 159 (343)
|+ |.+.++-.. ....++++..+.++.+++.+=++++|+.+
T Consensus 216 Gv--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 216 GV--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred CE--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 53 555444322 23457899999999999998899999976
No 52
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=59.48 E-value=1.5e+02 Score=27.58 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=53.9
Q ss_pred HHHHhcCCCcccEEEecC-CCC-CCCHHHHHHHHHHHHHcCCcce-EecCCC---cHHHHHHHhcCCC-eeEeccccccc
Q 019272 112 ASLKRLDVDYIDLYYQHR-IDT-KVPIEITIGELKKLVEEGKIKY-IGLSEA---SASTIRRAHAVHP-ITAVQLEWSLW 184 (343)
Q Consensus 112 ~SL~rLg~d~iDl~~lH~-~~~-~~~~~~~~~~L~~l~~~G~ir~-iGvs~~---~~~~l~~~~~~~~-~~~~q~~~~~~ 184 (343)
+.-+.+|.|+||+-+.-. |+. +...++....++...+.=.+-- |..|.. +++.++++++... -.++-..-+
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat-- 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE-- 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC--
Confidence 445688988888765432 322 2233444455555444333333 655533 6888888777532 111111111
Q ss_pred ccchhhhhHHHHHHhCCeEEecccC
Q 019272 185 TRDAEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 185 ~~~~~~~ll~~~~~~gi~v~a~~pl 209 (343)
...-+.+.+.|+++|..|++.+|.
T Consensus 161 -~en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 161 -EDNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred -HHHHHHHHHHHHHhCCeEEEEcHH
Confidence 111357999999999999998864
No 53
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=59.44 E-value=66 Score=28.77 Aligned_cols=64 Identities=9% Similarity=-0.043 Sum_probs=37.3
Q ss_pred HHHHHcCCcceEec--CCCcHHHHHHHhcCC--CeeEecccccccccchhhhhHHHHHHhCCeEEecccC
Q 019272 144 KKLVEEGKIKYIGL--SEASASTIRRAHAVH--PITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 144 ~~l~~~G~ir~iGv--s~~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl 209 (343)
.+-.++|+. .+|+ +.-++.. .+++... .+.++-.+..+++...-..++..++..|+..++.-|-
T Consensus 4 k~~l~~g~~-~~G~~~~~~sp~~-~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 4 RQDLLARET-LIGCWSALGNPIT-TEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HHHHHcCCc-eEEEEEcCCCcHH-HHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 344445664 3443 2233433 4444443 4444455777777654467888888888888887764
No 54
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=59.23 E-value=1.5e+02 Score=27.46 Aligned_cols=153 Identities=16% Similarity=0.115 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLK 115 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~ 115 (343)
+.++..+.+..+.+.|++.|=.-- +. ..+.-+=+++++.. .++-|. .+.. ..++.+.+. .-+.|+
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~-~~~~l~----vDaN-----~~~~~~~a~--~~~~l~ 196 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRF-PQIPLV----IDAN-----ESYDLQDFP--RLKELD 196 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhC-CCCcEE----EECC-----CCCCHHHHH--HHHHHh
Confidence 446667777888899999873221 11 12222234444422 233222 2211 134555431 123333
Q ss_pred hcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEeccccccccc-chhhhhH
Q 019272 116 RLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAEIV 193 (343)
Q Consensus 116 rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ll 193 (343)
. .++.++-.|-. .+.++.+.+|++...+. ..|=|.++...++.++....++++|+..+.+-. ..-.++.
T Consensus 197 ~-----~~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~ 267 (324)
T TIGR01928 197 R-----YQLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAI 267 (324)
T ss_pred h-----CCCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHH
Confidence 3 35555555543 23467788888876555 667788899999999998889999987665432 1235799
Q ss_pred HHHHHhCCeEEecccCccc
Q 019272 194 PTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 194 ~~~~~~gi~v~a~~pl~~G 212 (343)
..|+++|+.++..+.+..|
T Consensus 268 ~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 268 ETCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHHcCCeEEEcceEccc
Confidence 9999999999987655444
No 55
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=59.10 E-value=93 Score=27.37 Aligned_cols=145 Identities=12% Similarity=0.007 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEe--------------ecCcccCCCCCCCCC
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELAT--------------KFGIINEDGQFLYRG 101 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~t--------------K~~~~~~~~~~~~~~ 101 (343)
+.+++.++ ++.|+..+..+...-. +-..+.++.+....+++.++. +.|... ...
T Consensus 82 s~~d~~~~----l~~G~~~v~ig~~~~~--~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~------~~~ 149 (243)
T cd04731 82 SLEDARRL----LRAGADKVSINSAAVE--NPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKP------TGL 149 (243)
T ss_pred CHHHHHHH----HHcCCceEEECchhhh--ChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCcee------cCC
Confidence 44554444 4568888877654322 334555555543334455443 222211 011
Q ss_pred CHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHH-HHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCeeEecc
Q 019272 102 DPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIE-ITIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 102 s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~-~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 179 (343)
+. ..+-+.++.+| +|.+.+|..+...... --++.+.++++.-.+.-|.... .+++.++++++....+.+.+
T Consensus 150 ~~----~~~~~~l~~~G---~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 150 DA----VEWAKEVEELG---AGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred CH----HHHHHHHHHCC---CCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 11 22234455666 5666677654422111 1255556666555566555554 35777887777655655555
Q ss_pred cccccccch-hhhhHHHHHHh
Q 019272 180 EWSLWTRDA-EAEIVPTCREL 199 (343)
Q Consensus 180 ~~~~~~~~~-~~~ll~~~~~~ 199 (343)
---+..... -.+++.+|+++
T Consensus 223 g~al~~~~~~~~~~~~~~~~~ 243 (243)
T cd04731 223 ASIFHFGEYTIAELKEYLAER 243 (243)
T ss_pred eHHHHcCCCCHHHHHHHHhhC
Confidence 322322221 23566666653
No 56
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=58.77 E-value=67 Score=30.89 Aligned_cols=83 Identities=7% Similarity=-0.018 Sum_probs=59.8
Q ss_pred cEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEeccccccccc-chhhhhHHHHHHhC
Q 019272 123 DLYYQHRIDTKVPIEITIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAEIVPTCRELG 200 (343)
Q Consensus 123 Dl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ll~~~~~~g 200 (343)
++.++-.|-+. +-++.+.+|++.-.+. ..|=|-++...++.+++...++++|+...-.-- ..-.++.+.|+.+|
T Consensus 233 ~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~g 308 (404)
T PRK15072 233 RLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQ 308 (404)
T ss_pred CCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcC
Confidence 45555544332 2367778888876665 667777899999999998889999987665432 12357999999999
Q ss_pred CeEEecccC
Q 019272 201 IGIVAYSPL 209 (343)
Q Consensus 201 i~v~a~~pl 209 (343)
+.++.++..
T Consensus 309 i~~~~h~~~ 317 (404)
T PRK15072 309 VRTGSHGPT 317 (404)
T ss_pred CceeeccCc
Confidence 999987554
No 57
>COG0218 Predicted GTPase [General function prediction only]
Probab=58.61 E-value=1.2e+02 Score=26.14 Aligned_cols=116 Identities=12% Similarity=-0.005 Sum_probs=77.1
Q ss_pred cCccccccccCCCCCCCCCCHHHHHHHHHHHHH------cCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCc
Q 019272 17 VSAQGLGCMGMSAFYGPPKPESDMIALIHHAID------NGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGI 90 (343)
Q Consensus 17 vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~------~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~ 90 (343)
|=.-|||-++.. ..-.+....++...++ ..+-.+|.-..--. .+..+=+++......=+++.||.--
T Consensus 75 VDlPGYGyAkv~-----k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~--~D~em~~~l~~~~i~~~vv~tK~DK 147 (200)
T COG0218 75 VDLPGYGYAKVP-----KEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKD--LDREMIEFLLELGIPVIVVLTKADK 147 (200)
T ss_pred EeCCCcccccCC-----HHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcH--HHHHHHHHHHHcCCCeEEEEEcccc
Confidence 334577766532 1123444555555553 35667886654432 6778888888877888899999863
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccE--EEecCCCCCCCHHHHHHHHHHHHHc
Q 019272 91 INEDGQFLYRGDPAYVRAACEASLKRLDVDYIDL--YYQHRIDTKVPIEITIGELKKLVEE 149 (343)
Q Consensus 91 ~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl--~~lH~~~~~~~~~~~~~~L~~l~~~ 149 (343)
.......+.+....++|+.+..|- +++.........+++++.+.+....
T Consensus 148 ----------i~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 148 ----------LKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ----------CChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 345667788889999998877776 5555555556688888888776654
No 58
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=57.67 E-value=93 Score=30.86 Aligned_cols=68 Identities=9% Similarity=0.089 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCcce----EecCCCcHHHHHHHhcC---CCeeEecccccccccchhhhhHHHHHHhCC
Q 019272 132 TKVPIEITIGELKKLVEEGKIKY----IGLSEASASTIRRAHAV---HPITAVQLEWSLWTRDAEAEIVPTCRELGI 201 (343)
Q Consensus 132 ~~~~~~~~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi 201 (343)
.....++..++++.+++.|..-. +|+-+.+.+.+++.++. .+++ ++.++.+.+.+..++.+.+++.+.
T Consensus 318 K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~--~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 318 KGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD--QANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC--ceEEEEecCCCCcHHHHHHHhhcc
Confidence 33456788899999999997433 46667777776655443 3333 334466666666788888887764
No 59
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=57.54 E-value=71 Score=30.89 Aligned_cols=86 Identities=12% Similarity=-0.001 Sum_probs=61.5
Q ss_pred cEEEecCCCCCCCHHHHHHHHHHHHHc------CCcceEecCCCcHHHHHHHhcCCCeeEeccccccccc-chhhhhHHH
Q 019272 123 DLYYQHRIDTKVPIEITIGELKKLVEE------GKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAEIVPT 195 (343)
Q Consensus 123 Dl~~lH~~~~~~~~~~~~~~L~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ll~~ 195 (343)
++ ++-.|-+..+.++-++.+.+|+++ ..=-..+=|.++.+.++++++..-.+++|+..+-+-- ..-.++.++
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 44 677776544434557777777765 3333456667889999999998888999987775432 123579999
Q ss_pred HHHhCCeEEecccC
Q 019272 196 CRELGIGIVAYSPL 209 (343)
Q Consensus 196 ~~~~gi~v~a~~pl 209 (343)
|+++||.++..+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999997665
No 60
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=57.34 E-value=1.3e+02 Score=26.15 Aligned_cols=101 Identities=18% Similarity=0.177 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHH
Q 019272 34 PKPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEAS 113 (343)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~S 113 (343)
..+.++..++++.|.+.|+.-+=..+.|- ....+.|+ ..++-|+|=++++.+ ....+.-...+++.
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p~~v-----~~a~~~l~---~~~v~v~tVigFP~G------~~~~~~K~~E~~~A 79 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNPSYV-----PLAKELLK---GTEVRICTVVGFPLG------ASTTDVKLYETKEA 79 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCHHHH-----HHHHHHcC---CCCCeEEEEeCCCCC------CCcHHHHHHHHHHH
Confidence 34789999999999999987776655542 23344443 347888888887643 22344444555655
Q ss_pred HHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHc
Q 019272 114 LKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEE 149 (343)
Q Consensus 114 L~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~ 149 (343)
++ +|.|-||+++-...-...+.+...+.+.+.++.
T Consensus 80 v~-~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~ 114 (211)
T TIGR00126 80 IK-YGADEVDMVINIGALKDGNEEVVYDDIRAVVEA 114 (211)
T ss_pred HH-cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHH
Confidence 54 799999998876654445567777777777664
No 61
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=56.24 E-value=91 Score=27.23 Aligned_cols=162 Identities=15% Similarity=0.159 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc-CCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHH
Q 019272 35 KPESDMIALIHHAIDNGITFLDTS-DVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEAS 113 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA-~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~S 113 (343)
.+.++..++++...+.||..|+.. +..+. ...+.+-+..+..+.. .+.+-+ +...+.++..++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~--~~~~~~-----------~~~~~~i~~~~~~- 75 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNA--RLQALC-----------RANEEDIERAVEA- 75 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSS--EEEEEE-----------ESCHHHHHHHHHH-
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhccc--ccceee-----------eehHHHHHHHHHh-
Confidence 367889999999999999999999 44432 1223344433332222 222222 1234556666653
Q ss_pred HHhcCCCcccEEEecCCC-----CCCC----HHHHHHHHHHHHHcCCcceEecCC---CcHHHHHHHhcC---CCeeEec
Q 019272 114 LKRLDVDYIDLYYQHRID-----TKVP----IEITIGELKKLVEEGKIKYIGLSE---ASASTIRRAHAV---HPITAVQ 178 (343)
Q Consensus 114 L~rLg~d~iDl~~lH~~~-----~~~~----~~~~~~~L~~l~~~G~ir~iGvs~---~~~~~l~~~~~~---~~~~~~q 178 (343)
+...|.+.+.++.-=++. .... .+.+.+.++..++.|....+++.. ++++.+.++.+. ..++.+.
T Consensus 76 ~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 155 (237)
T PF00682_consen 76 AKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIY 155 (237)
T ss_dssp HHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEE
T ss_pred hHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEE
Confidence 356787777765432220 0011 344566677777888888888754 345544443332 2334443
Q ss_pred cc--ccccccchhhhhHHHHHHh----CCeEEecccCcc
Q 019272 179 LE--WSLWTRDAEAEIVPTCREL----GIGIVAYSPLGR 211 (343)
Q Consensus 179 ~~--~~~~~~~~~~~ll~~~~~~----gi~v~a~~pl~~ 211 (343)
+. +..+.+..-.+++...++. .+++.++.-++.
T Consensus 156 l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gl 194 (237)
T PF00682_consen 156 LADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGL 194 (237)
T ss_dssp EEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-
T ss_pred eeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccc
Confidence 32 2223332223555555543 255555555543
No 62
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=56.12 E-value=1.8e+02 Score=27.34 Aligned_cols=150 Identities=9% Similarity=0.038 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHh
Q 019272 37 ESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKR 116 (343)
Q Consensus 37 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~r 116 (343)
.++..+.+..+.+.|++.|=.--....-..+.-.=+++++.-.+++.|..-.. ..++.+...+-+ +.|+.
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN---------~~~~~~~A~~~~-~~l~~ 211 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYN---------QSLTVPEAIERG-QALDQ 211 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCC---------CCcCHHHHHHHH-HHHHc
Confidence 34555666777788887653221111101222223455543334555544332 134555433222 33444
Q ss_pred cCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEeccccccccc-chhhhhHH
Q 019272 117 LDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAEIVP 194 (343)
Q Consensus 117 Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ll~ 194 (343)
+ ++.++-.|-.. +-++.+.+|++.--|. ..|=+.++...+..+++...++++|+..+.+-- ..-.++.+
T Consensus 212 ~-----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~ 282 (355)
T cd03321 212 E-----GLTWIEEPTLQ----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASA 282 (355)
T ss_pred C-----CCCEEECCCCC----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHH
Confidence 4 45555555432 2356777777764432 556667889999999988888999987765432 12357899
Q ss_pred HHHHhCCeEEe
Q 019272 195 TCRELGIGIVA 205 (343)
Q Consensus 195 ~~~~~gi~v~a 205 (343)
.|+.+|+.++.
T Consensus 283 ~A~~~gi~~~~ 293 (355)
T cd03321 283 LAEQAGIPMSS 293 (355)
T ss_pred HHHHcCCeecc
Confidence 99999999864
No 63
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=56.05 E-value=1.7e+02 Score=27.96 Aligned_cols=105 Identities=17% Similarity=0.191 Sum_probs=62.2
Q ss_pred HHHHHHHHHHH-----------HhcCCCcccEEEecCCCCC-----CCHHHHHHHHHHHHHcCCcc-eEecC---CCcHH
Q 019272 104 AYVRAACEASL-----------KRLDVDYIDLYYQHRIDTK-----VPIEITIGELKKLVEEGKIK-YIGLS---EASAS 163 (343)
Q Consensus 104 ~~i~~~~~~SL-----------~rLg~d~iDl~~lH~~~~~-----~~~~~~~~~L~~l~~~G~ir-~iGvs---~~~~~ 163 (343)
+.+++.+++.. +.++ +|++.||....+ .+.++..+..++..+.=.+- -|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 55666666554 5666 788888875432 23456666666664433222 22222 45788
Q ss_pred HHHHHhcCCCe-eEecccccccccchhhhhHHHHHHhCCeEEecccCcccc
Q 019272 164 TIRRAHAVHPI-TAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPLGRGF 213 (343)
Q Consensus 164 ~l~~~~~~~~~-~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~ 213 (343)
.++++++...= .++...-|.=+ + -.++.+.|+++|..|++++|..-|.
T Consensus 205 VLeaaLe~~~G~kpLL~SAt~e~-N-y~~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASANLDL-D-YEKIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred HHHHHHHHhCCCCcEEEecCchh-h-HHHHHHHHHHhCCeEEEEcCCcHHH
Confidence 88888776321 12211112211 2 3579999999999999999876553
No 64
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=56.03 E-value=98 Score=27.72 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecCCCC-----CCCHHHHHHHHHHHHHc-CCcceEecC---CCcHHHHHHHhc
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQHRIDT-----KVPIEITIGELKKLVEE-GKIKYIGLS---EASASTIRRAHA 170 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~-----~~~~~~~~~~L~~l~~~-G~ir~iGvs---~~~~~~l~~~~~ 170 (343)
.++.+.. ..+-+.|.++|+++|.+-+...... .......++.++.+++. +..+...++ ....+.++.+.+
T Consensus 18 ~~~~~~k-~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQV-RAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHH-HHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 4566654 5555669999999999986532110 00111235555555443 345655554 223566777665
Q ss_pred CCCeeEecccccccccchhhhhHHHHHHhCCeEEec
Q 019272 171 VHPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAY 206 (343)
Q Consensus 171 ~~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~ 206 (343)
. .++.+.+..+.-+-..-.+.+++++++|+.+...
T Consensus 97 ~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 L-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred c-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 4 3455554333322222357888999999876554
No 65
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=55.90 E-value=1.6e+02 Score=26.82 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHcC-CCeEeC---cCCC-----CCCchHHHHHHHhhcCC-CCCEEEEeecCcccCCCCCCCCCCHHH
Q 019272 36 PESDMIALIHHAIDNG-ITFLDT---SDVY-----GPHTNEILLGKALKGGY-RERVELATKFGIINEDGQFLYRGDPAY 105 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~G-in~~DT---A~~Y-----g~g~sE~~lG~al~~~~-R~~~~i~tK~~~~~~~~~~~~~~s~~~ 105 (343)
+.++..+..+.+-+.| +..||- +++. ..+...+.+-+.++... .-++-|..|+.+.. +.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~-----------~~ 170 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV-----------TD 170 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc-----------hh
Confidence 5677788888888888 999975 2221 22335666666665521 12677889987431 12
Q ss_pred HHHHHHHHHHhcCCCcccEEE-ecCC--CCC----------------CCHHHHHHHHHHHHHcCCcceEecCCC-cHHHH
Q 019272 106 VRAACEASLKRLDVDYIDLYY-QHRI--DTK----------------VPIEITIGELKKLVEEGKIKYIGLSEA-SASTI 165 (343)
Q Consensus 106 i~~~~~~SL~rLg~d~iDl~~-lH~~--~~~----------------~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l 165 (343)
+ ..+-+.|+..|.|.|++.- ++.. +.. ....-.++.+.++++.=.+--||+... +++.+
T Consensus 171 ~-~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da 249 (301)
T PRK07259 171 I-VEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDA 249 (301)
T ss_pred H-HHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 2 2344567788987776532 1111 000 000114666677776656888888885 78888
Q ss_pred HHHhcCCCeeEecccccccc-cc----hhhhhHHHHHHhCC
Q 019272 166 RRAHAVHPITAVQLEWSLWT-RD----AEAEIVPTCRELGI 201 (343)
Q Consensus 166 ~~~~~~~~~~~~q~~~~~~~-~~----~~~~ll~~~~~~gi 201 (343)
.+++... .+.+|+-=-++. +. ...++-.++.++|.
T Consensus 250 ~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 250 IEFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 8887654 577776322222 11 22456677777764
No 66
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=55.19 E-value=1.5e+02 Score=26.71 Aligned_cols=106 Identities=13% Similarity=0.187 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCH------HHHHHHHHHHHH-cCCcceEecCC-CcHHHHHHHhc
Q 019272 99 YRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPI------EITIGELKKLVE-EGKIKYIGLSE-ASASTIRRAHA 170 (343)
Q Consensus 99 ~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~------~~~~~~L~~l~~-~G~ir~iGvs~-~~~~~l~~~~~ 170 (343)
..++.+...+-++. |.++|+|+|++-+.......... .+.++.+..+.+ .-++..+.-.. ...+.++.+.+
T Consensus 15 ~~f~~~~~~~ia~~-L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 15 WDFGDEFVKAIYRA-LAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred ccCCHHHHHHHHHH-HHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhc
Q ss_pred CCCeeEecccccccccchhhhhHHHHHHhCCeEEec
Q 019272 171 VHPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAY 206 (343)
Q Consensus 171 ~~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~ 206 (343)
.. ++.+.+.+..-....-.+.+++++++|+.|...
T Consensus 94 ~g-v~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 94 SV-VDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CC-cCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
No 67
>PLN02389 biotin synthase
Probab=54.52 E-value=1.9e+02 Score=27.70 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCC-CCC-Cc--hHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHH
Q 019272 35 KPESDMIALIHHAIDNGITFLDTSDV-YGP-HT--NEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAAC 110 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA~~-Yg~-g~--sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~ 110 (343)
.+.++..+.++.+.+.|++.|--... .+. +. .-..+-+.++......+.|....|.. + +..
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l----------~-----~E~ 180 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGML----------E-----KEQ 180 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCC----------C-----HHH
Confidence 47888889999999999998743211 111 11 12344555555332334555444422 2 233
Q ss_pred HHHHHhcCCCcccEEEecC-------CCCCCCHHHHHHHHHHHHHcCC
Q 019272 111 EASLKRLDVDYIDLYYQHR-------IDTKVPIEITIGELKKLVEEGK 151 (343)
Q Consensus 111 ~~SL~rLg~d~iDl~~lH~-------~~~~~~~~~~~~~L~~l~~~G~ 151 (343)
-+.|+..|+|++-+- +.. .-....+++.++.++.+++.|.
T Consensus 181 l~~LkeAGld~~~~~-LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 181 AAQLKEAGLTAYNHN-LDTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHHcCCCEEEee-ecCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 344566677664331 111 1112357888999999999985
No 68
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=54.51 E-value=60 Score=33.21 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=47.7
Q ss_pred HhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHHhcCCCeeEeccccc
Q 019272 115 KRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEWS 182 (343)
Q Consensus 115 ~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 182 (343)
..+|.||+=+++..........+.+...+.+....-.++.+||- |-+++.+.++.+...++++|+.-.
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~ 88 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGA 88 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 55899999998666544445555523333333333357789995 778899999998899999998653
No 69
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=54.08 E-value=1.7e+02 Score=26.44 Aligned_cols=109 Identities=9% Similarity=-0.044 Sum_probs=63.1
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCc-CCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCC
Q 019272 19 AQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTS-DVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQF 97 (343)
Q Consensus 19 ~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA-~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~ 97 (343)
.||+++|....+.|.-.++.....-.-+.+...+|.+.-- ..|.. .+++.+-++.++ ..+++..+.|+.....
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~-p~~~t~~~W~~~-~p~~FrFsvK~~~~iT---- 77 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAP-PSPETVLRWAEE-TPDDFRFSVKAPRAIT---- 77 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCC-CCHHHHHHHHHh-CCCCeEEEEEeccccc----
Confidence 4666666665433332233222222334445557776643 35553 366777788876 6899999999974321
Q ss_pred CCCCCH---HHHHHHHHHHHHhcCCCcccEEEecCCCCCC
Q 019272 98 LYRGDP---AYVRAACEASLKRLDVDYIDLYYQHRIDTKV 134 (343)
Q Consensus 98 ~~~~s~---~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~ 134 (343)
+..... ..+.+.+.+-++.|| +.+..+++.-|....
T Consensus 78 H~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf~ 116 (263)
T COG1801 78 HQRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSFK 116 (263)
T ss_pred chhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCccc
Confidence 111122 334445555556777 689999999986653
No 70
>smart00642 Aamy Alpha-amylase domain.
Probab=53.74 E-value=23 Score=29.54 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=18.1
Q ss_pred hhhHHHHHHhCCeEEecccCcc
Q 019272 190 AEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 190 ~~ll~~~~~~gi~v~a~~pl~~ 211 (343)
+.+++.|+++||.|+.=-++..
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 73 KELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHCCCEEEEEECCCC
Confidence 6899999999999997555543
No 71
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=53.52 E-value=2e+02 Score=27.09 Aligned_cols=153 Identities=10% Similarity=0.059 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcC-CCeEeCcCC-CCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 019272 38 SDMIALIHHAIDNG-ITFLDTSDV-YGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLK 115 (343)
Q Consensus 38 ~~~~~~l~~A~~~G-in~~DTA~~-Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~ 115 (343)
++..+.+..+++.| ++.|=.--. -+.....+.+ +++++.-.+++-|.-=.. ..++.+.. ..+-+.|+
T Consensus 144 ~~~~~~~~~~~~~G~f~~~KiKvg~~~~~~d~~~v-~avr~~~g~~~~l~iDaN---------~~~~~~~A-~~~~~~l~ 212 (365)
T cd03318 144 ERDIAEAEEMLEAGRHRRFKLKMGARPPADDLAHV-EAIAKALGDRASVRVDVN---------QAWDESTA-IRALPRLE 212 (365)
T ss_pred HHHHHHHHHHHhCCCceEEEEEeCCCChHHHHHHH-HHHHHHcCCCcEEEEECC---------CCCCHHHH-HHHHHHHH
Confidence 44445566778888 887754210 0110122333 344442223333322211 12344432 22223444
Q ss_pred hcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEeccccccccc-chhhhhH
Q 019272 116 RLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAEIV 193 (343)
Q Consensus 116 rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ll 193 (343)
.+ ++.++-.|-+. +-++.+.+|+++..|. +.|=+-++...+..+++...++++|+....+-. ..-.++.
T Consensus 213 ~~-----~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~ 283 (365)
T cd03318 213 AA-----GVELIEQPVPR----ENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVA 283 (365)
T ss_pred hc-----CcceeeCCCCc----ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHH
Confidence 44 44445555432 2367778888876665 666677888999999888888888887665432 1235789
Q ss_pred HHHHHhCCeEEecccCc
Q 019272 194 PTCRELGIGIVAYSPLG 210 (343)
Q Consensus 194 ~~~~~~gi~v~a~~pl~ 210 (343)
.+|+++|+.++..+-+.
T Consensus 284 ~~a~~~gi~~~~~~~~~ 300 (365)
T cd03318 284 AIAEAAGIALYGGTMLE 300 (365)
T ss_pred HHHHHcCCceeecCcch
Confidence 99999999988654443
No 72
>PRK06424 transcription factor; Provisional
Probab=53.31 E-value=66 Score=26.17 Aligned_cols=81 Identities=11% Similarity=0.155 Sum_probs=40.9
Q ss_pred hhhhHHHHHHhCCeEEec---ccCcc--ccCCCCCCc-ccCCCcchhhhccccchhhhhHHHHHHHHHHHHHHHHhCCCH
Q 019272 189 EAEIVPTCRELGIGIVAY---SPLGR--GFFSSGPEL-AENLSKDDYRQSLPRFQAENLEHNKKLFERVNEIAAKKGCTP 262 (343)
Q Consensus 189 ~~~ll~~~~~~gi~v~a~---~pl~~--G~l~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~~~s~ 262 (343)
+-.+-+.|.+.|..|..+ +|... -.-...... .........+.. ..+.....+......+.|+.+-++.|+|.
T Consensus 22 ~l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ 100 (144)
T PRK06424 22 ILNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKKYK-KKASDEDLDIVEDYAELVKNARERLSMSQ 100 (144)
T ss_pred eeehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCCcc-CcccHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 346888899999999998 55532 111100000 000000000000 11111112223345567777888889999
Q ss_pred HHHHHHHH
Q 019272 263 SQLALAWV 270 (343)
Q Consensus 263 ~q~al~~~ 270 (343)
.++|-+--
T Consensus 101 ~eLA~~iG 108 (144)
T PRK06424 101 ADLAAKIF 108 (144)
T ss_pred HHHHHHhC
Confidence 99886543
No 73
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=53.14 E-value=2e+02 Score=27.03 Aligned_cols=97 Identities=15% Similarity=0.041 Sum_probs=43.7
Q ss_pred CCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEE-EecC-CCCC----CCHHHHHHHHHHHHHcCCc
Q 019272 79 RERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLY-YQHR-IDTK----VPIEITIGELKKLVEEGKI 152 (343)
Q Consensus 79 R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~-~lH~-~~~~----~~~~~~~~~L~~l~~~G~i 152 (343)
..++.|..|++..... ....+.+.. ..+-+-|+.+|+|||++- -.|. +... .+........+++++.=.+
T Consensus 202 G~d~~v~iRi~~~D~~---~~g~~~~e~-~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~i 277 (353)
T cd02930 202 GEDFIIIYRLSMLDLV---EGGSTWEEV-VALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDI 277 (353)
T ss_pred CCCceEEEEecccccC---CCCCCHHHH-HHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCC
Confidence 3466677776643110 011233333 234445667777666651 1131 1110 0001122334445554445
Q ss_pred ceEecCC-CcHHHHHHHhcCCCeeEecc
Q 019272 153 KYIGLSE-ASASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 153 r~iGvs~-~~~~~l~~~~~~~~~~~~q~ 179 (343)
--++... ++++.++++++....|.+++
T Consensus 278 PVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 278 PVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred CEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 5555544 35566666666655555544
No 74
>PRK14017 galactonate dehydratase; Provisional
Probab=53.09 E-value=70 Score=30.46 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEeccccccccc-chhhhhHHHHHHhCCeEEeccc
Q 019272 140 IGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAEIVPTCRELGIGIVAYSP 208 (343)
Q Consensus 140 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ll~~~~~~gi~v~a~~p 208 (343)
++.+.+|++...+. ..|=|.++...++.+++...++++|+..+.+-- ..-.++.+.|+++||.++.++.
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 57788888877665 667777899999999998888999987665432 2235899999999999998764
No 75
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=53.03 E-value=39 Score=31.99 Aligned_cols=72 Identities=11% Similarity=0.028 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEeccccccccc-chhhhhHHHHHHhCCeEEecccCcc
Q 019272 140 IGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 140 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ll~~~~~~gi~v~a~~pl~~ 211 (343)
++.+.+|++...+. ..|=|-++...+..++....++++|+.....-. ..-.++...|+.+|+.++..+.+.+
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s 300 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEG 300 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhh
Confidence 66677777776555 667777888888888888778888887665332 1235789999999999877654443
No 76
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=53.02 E-value=23 Score=26.94 Aligned_cols=53 Identities=19% Similarity=0.133 Sum_probs=40.3
Q ss_pred CCCcHHHHHHHhcCCCeeEeccccccccc-chhhhhHHHHHHhCCeEEecccCcc
Q 019272 158 SEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 158 s~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ll~~~~~~gi~v~a~~pl~~ 211 (343)
+.++...++++++...++++|+.....-- ..-..+.++|+++|+.++..+. .+
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~ 56 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ES 56 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SS
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CC
Confidence 56778889999998888999987655421 1235799999999999999986 44
No 77
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=52.48 E-value=52 Score=27.02 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeec-CcccCCCCCCCCCCHHHHHHHHHHH
Q 019272 35 KPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKF-GIINEDGQFLYRGDPAYVRAACEAS 113 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~-~~~~~~~~~~~~~s~~~i~~~~~~S 113 (343)
.+++...-.+++|-+.||.+|=.|+.||. +-..+-+.+.. . =+++++|-- |... -+...+.+.+++-
T Consensus 11 NT~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lemveg-~-lkvVvVthh~Gf~e--------~g~~e~~~E~~~~ 78 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVASSTGY--TALKALEMVEG-D-LKVVVVTHHAGFEE--------KGTQEMDEEVRKE 78 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHhccc-C-ceEEEEEeeccccc--------CCceecCHHHHHH
Confidence 35666777888999999999999999985 44444444433 1 245555543 3321 1233456778888
Q ss_pred HHhcCC
Q 019272 114 LKRLDV 119 (343)
Q Consensus 114 L~rLg~ 119 (343)
|+..|.
T Consensus 79 L~erGa 84 (186)
T COG1751 79 LKERGA 84 (186)
T ss_pred HHHcCc
Confidence 999884
No 78
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=52.08 E-value=1.7e+02 Score=25.92 Aligned_cols=88 Identities=10% Similarity=0.049 Sum_probs=48.4
Q ss_pred HHHhcCCCcccEEEecCCCCCCCH-HHHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCeeEecccccccccc-hh
Q 019272 113 SLKRLDVDYIDLYYQHRIDTKVPI-EITIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQLEWSLWTRD-AE 189 (343)
Q Consensus 113 SL~rLg~d~iDl~~lH~~~~~~~~-~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~ 189 (343)
-+..+| +|-+.+|..+..... .--|+.+.++.+.-.+.-|.-.. .+.+++.++.+....+.+.+---+.... .-
T Consensus 161 ~~~~~g---~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~ 237 (253)
T PRK02083 161 EVEELG---AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITI 237 (253)
T ss_pred HHHHcC---CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCH
Confidence 334556 566777765432111 11266666666655566554443 3567887777654554444421122111 12
Q ss_pred hhhHHHHHHhCCeE
Q 019272 190 AEIVPTCRELGIGI 203 (343)
Q Consensus 190 ~~ll~~~~~~gi~v 203 (343)
.++++.|++.||.+
T Consensus 238 ~~~~~~~~~~~~~~ 251 (253)
T PRK02083 238 GELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHHCCCcc
Confidence 57889999888864
No 79
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=51.82 E-value=1.1e+02 Score=29.21 Aligned_cols=84 Identities=18% Similarity=0.086 Sum_probs=55.4
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHc------CCcceEecCCCcHHHHHHHhcCCCeeEeccccccccc-chhhhhHHHHH
Q 019272 125 YYQHRIDTKVPIEITIGELKKLVEE------GKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAEIVPTCR 197 (343)
Q Consensus 125 ~~lH~~~~~~~~~~~~~~L~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ll~~~~ 197 (343)
+++-.|-+..+.++-++.+.+|.+. +.=-..|=+.++...++++++....+++|+..+-.-- ..-.++.++|+
T Consensus 230 ~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~ 309 (369)
T cd03314 230 LRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCK 309 (369)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHH
Confidence 3454444332222346666677665 3333556666788888888888888888887765432 12357899999
Q ss_pred HhCCeEEeccc
Q 019272 198 ELGIGIVAYSP 208 (343)
Q Consensus 198 ~~gi~v~a~~p 208 (343)
.+||.++..+.
T Consensus 310 a~Gi~~~~h~~ 320 (369)
T cd03314 310 EHGVGAYLGGS 320 (369)
T ss_pred HcCCcEEEeCC
Confidence 99999998754
No 80
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=51.41 E-value=2.3e+02 Score=27.31 Aligned_cols=89 Identities=13% Similarity=0.091 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEec
Q 019272 99 YRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 99 ~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 178 (343)
.+.+.+.+.+.+++..+ |-+|.+-||.- -+.+.++.++++|+ ..|+-+-....+...+....
T Consensus 138 ~~mt~d~~~~~ie~qa~----~GVDfmTiHcG-------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n~----- 199 (431)
T PRK13352 138 VDMTEDDLFDVIEKQAK----DGVDFMTIHCG-------VTRETLERLKKSGR--IMGIVSRGGSFLAAWMLHNN----- 199 (431)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccc-------hhHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHcC-----
Confidence 46788888888887776 45888999984 35778888988885 66777666655544433221
Q ss_pred ccccccccchhhhhHHHHHHhCCeEEecc
Q 019272 179 LEWSLWTRDAEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 179 ~~~~~~~~~~~~~ll~~~~~~gi~v~a~~ 207 (343)
.-|++...+ .++++.|++++|.+--.-
T Consensus 200 -~ENPlye~f-D~lLeI~~~yDVtlSLGD 226 (431)
T PRK13352 200 -KENPLYEHF-DYLLEILKEYDVTLSLGD 226 (431)
T ss_pred -CcCchHHHH-HHHHHHHHHhCeeeeccC
Confidence 225555443 589999999999875333
No 81
>PRK05406 LamB/YcsF family protein; Provisional
Probab=51.26 E-value=63 Score=28.83 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=54.5
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHHH-HHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCC--CCC
Q 019272 21 GLGCMGMSAFYGPPKPESDMIALIHHA-IDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINED--GQF 97 (343)
Q Consensus 21 glG~~~~~~~~~~~~~~~~~~~~l~~A-~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~--~~~ 97 (343)
+||.|.+| ++++...+|..| +.+|+ |.| ....+-+.++--....+-|-..-++.... +..
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssANIACG~-------HAG---Dp~~M~~tv~lA~~~gV~IGAHPgypD~~gFGRR 75 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSANIACGF-------HAG---DPAVMRRTVRLAKENGVAIGAHPGYPDLEGFGRR 75 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCeEccCCCCCccCCCCCC
Confidence 78888875 456677777777 45565 667 46666666655456677787776655432 234
Q ss_pred CCCCCHHHHHHHHHHHHHhcC
Q 019272 98 LYRGDPAYVRAACEASLKRLD 118 (343)
Q Consensus 98 ~~~~s~~~i~~~~~~SL~rLg 118 (343)
..+.+++.+..++...+..|.
T Consensus 76 ~m~~s~~el~~~v~yQigAL~ 96 (246)
T PRK05406 76 NMDLSPEELYALVLYQIGALQ 96 (246)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 457788888888877776663
No 82
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=50.99 E-value=2.1e+02 Score=26.59 Aligned_cols=134 Identities=11% Similarity=0.075 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc---C-------CCCCC--chHHHHHHHhhcC-CCCCEEEEeecCcccCCCCCCCCCC
Q 019272 36 PESDMIALIHHAIDNGITFLDTS---D-------VYGPH--TNEILLGKALKGG-YRERVELATKFGIINEDGQFLYRGD 102 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA---~-------~Yg~g--~sE~~lG~al~~~-~R~~~~i~tK~~~~~~~~~~~~~~s 102 (343)
+.++..+..+.+.+.|+..||.- | .+|.. ..-..+.+.++.. ..-++-|+.|+...+.. +
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-------~ 147 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-------E 147 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC-------C
Confidence 56777777777888999999942 2 22211 1234444444431 01144577777533211 1
Q ss_pred HHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCH--HHHHHHHHHHHHcCCcceEecCCC-cHHHHHHHhcCCCeeEecc
Q 019272 103 PAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPI--EITIGELKKLVEEGKIKYIGLSEA-SASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 103 ~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~--~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 179 (343)
.... ..+-+-++..| +|.+.+|.-...... ..-|+.+.++++.=.|--||.... ++++++++++....+.+|+
T Consensus 148 ~~~~-~~~a~~le~~G---~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 148 HRNC-VEIAQLAEDCG---IQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred cchH-HHHHHHHHHhC---CCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 1111 23334467777 566778865422111 123777778877767777777764 7788888887777777876
Q ss_pred c
Q 019272 180 E 180 (343)
Q Consensus 180 ~ 180 (343)
-
T Consensus 224 G 224 (321)
T PRK10415 224 G 224 (321)
T ss_pred C
Confidence 4
No 83
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=50.89 E-value=99 Score=29.96 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEEe-cCCCC---------C-CCH-H---HHHHHH-HHHHHcCCcceEecCCCcH
Q 019272 101 GDPAYVRAACEASLKRLDVDYIDLYYQ-HRIDT---------K-VPI-E---ITIGEL-KKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rLg~d~iDl~~l-H~~~~---------~-~~~-~---~~~~~L-~~l~~~G~ir~iGvs~~~~ 162 (343)
-+.+.+.+.+++.+ .|+.|+|.+|.+ |-|.. . .+. + +.++.. +.|.+.|. +.+|+|||..
T Consensus 201 QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 201 QTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 36677777777665 467999999988 43311 0 111 1 344443 44556677 9999999986
No 84
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=50.85 E-value=1.1e+02 Score=26.69 Aligned_cols=72 Identities=19% Similarity=0.228 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCC-CCchH---HHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYG-PHTNE---ILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACE 111 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg-~g~sE---~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~ 111 (343)
+.++...+.+.|.+.|..|+=|+..|+ .|.+. +.+-+.++ +. +-.|..-. .+ +.+...+-++
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~--v~IKaaGG-------ir-t~~~a~~~i~ 195 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DT--IGVKASGG-------VR-TAEDAIAMIE 195 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cC--CeEEEeCC-------CC-CHHHHHHHHH
Confidence 557788999999999999999999987 34322 33444443 22 33343211 12 6788888888
Q ss_pred HHHHhcCCCc
Q 019272 112 ASLKRLDVDY 121 (343)
Q Consensus 112 ~SL~rLg~d~ 121 (343)
.--.|+|++.
T Consensus 196 aGa~riGts~ 205 (211)
T TIGR00126 196 AGASRIGASA 205 (211)
T ss_pred HhhHHhCcch
Confidence 8889999865
No 85
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=50.77 E-value=37 Score=33.27 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=81.6
Q ss_pred HHHHHHcCCCeEe--CcCCC---C-----CCchHHHHHHHhhcC---CCCCEEEEeecCcccCCCC----------CCCC
Q 019272 44 IHHAIDNGITFLD--TSDVY---G-----PHTNEILLGKALKGG---YRERVELATKFGIINEDGQ----------FLYR 100 (343)
Q Consensus 44 l~~A~~~Gin~~D--TA~~Y---g-----~g~sE~~lG~al~~~---~R~~~~i~tK~~~~~~~~~----------~~~~ 100 (343)
++..-+.|+..+- ||-.| | +|.-|+++..+-+.. .+.++++++=+|-.....+ ....
T Consensus 109 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vE 188 (545)
T TIGR01228 109 FHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVE 188 (545)
T ss_pred HHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEEEE
Confidence 5666677876554 55443 1 256777765554432 4677888887775432110 0112
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcC---CCeeEe
Q 019272 101 GDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAV---HPITAV 177 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~~~ 177 (343)
.++..| -+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-++.++++.+. +.+.+-
T Consensus 189 vd~~ri-------~kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtD 254 (545)
T TIGR01228 189 VDESRI-------DKRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTD 254 (545)
T ss_pred ECHHHH-------HHHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCC
Confidence 334433 468888999964 357899999999999999999999999888999988876 233333
Q ss_pred cccc
Q 019272 178 QLEW 181 (343)
Q Consensus 178 q~~~ 181 (343)
|...
T Consensus 255 QTSa 258 (545)
T TIGR01228 255 QTSA 258 (545)
T ss_pred CCcc
Confidence 5543
No 86
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=50.50 E-value=2.5e+02 Score=27.41 Aligned_cols=86 Identities=9% Similarity=0.086 Sum_probs=56.6
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEecccccccccchhhhhHHHHHHhCCe
Q 019272 124 LYYQHRIDTKVPIEITIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTRDAEAEIVPTCRELGIG 202 (343)
Q Consensus 124 l~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~ 202 (343)
+.++-.|-+..+..+-++.+.+|++...|. ..|-+.++...++.+++...++++|......--....++.+.|+.+|+.
T Consensus 252 ~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCE
Confidence 345555544332112367778887765544 4466667888999998888888888875322111235799999999999
Q ss_pred EEecccC
Q 019272 203 IVAYSPL 209 (343)
Q Consensus 203 v~a~~pl 209 (343)
+..++..
T Consensus 332 v~~h~~~ 338 (441)
T TIGR03247 332 WGSHSNN 338 (441)
T ss_pred EEEeCCc
Confidence 8776643
No 87
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=50.34 E-value=79 Score=31.64 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEecCCCC---CCCHHHHHHHHHHHHHcCCcceEec----CCCc--HHHHHHHhcCCCe
Q 019272 104 AYVRAACEASLKRLDVDYIDLYYQHRIDT---KVPIEITIGELKKLVEEGKIKYIGL----SEAS--ASTIRRAHAVHPI 174 (343)
Q Consensus 104 ~~i~~~~~~SL~rLg~d~iDl~~lH~~~~---~~~~~~~~~~L~~l~~~G~ir~iGv----s~~~--~~~l~~~~~~~~~ 174 (343)
+...+-|+..++...-.+.+ -|-.-. ...+-+..+-|.+++++|+||.+.+ ++-. ...+....+..|=
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~v~GCd~~~~~~~yvt~~kelipr 436 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVVVVGCDGLRSGRHYVTLFKELIPR 436 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEEEeeCCCCCCCcccHHHHHHhccc
Confidence 56678888888888877777 222111 1123456778889999999998843 3311 1234444444443
Q ss_pred eEecccccccccchhhhhHHHHHHhCCeE
Q 019272 175 TAVQLEWSLWTRDAEAEIVPTCRELGIGI 203 (343)
Q Consensus 175 ~~~q~~~~~~~~~~~~~ll~~~~~~gi~v 203 (343)
+++-+ +.-+....-.-++.|...||+-
T Consensus 437 D~lVL--t~GCgk~~~~~~~vc~~lGIPp 463 (576)
T COG1151 437 DILVL--TLGCGKYRFNKADVGDILGIPR 463 (576)
T ss_pred ceEEE--ecccchhhhhhhccccccCCCc
Confidence 44432 2222222234457888888863
No 88
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=50.03 E-value=2e+02 Score=26.20 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEecc
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 179 (343)
.++.+. +..+-+.|.++|+++|.+-.++.|...-...+.++.+..+.+...++...+. .....++.+.+... +.+.+
T Consensus 22 ~~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~-~~v~i 98 (287)
T PRK05692 22 FIPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGA-DEVAV 98 (287)
T ss_pred CcCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCC-CEEEE
Confidence 456564 4566677999999999987555553221122335555555544445555554 46777888777522 22222
Q ss_pred ccccc--------ccch------hhhhHHHHHHhCCeEEec
Q 019272 180 EWSLW--------TRDA------EAEIVPTCRELGIGIVAY 206 (343)
Q Consensus 180 ~~~~~--------~~~~------~~~ll~~~~~~gi~v~a~ 206 (343)
..+.- .... -.+.+++++++|+.+.++
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~ 139 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGY 139 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 22211 1111 136889999999988643
No 89
>PRK05414 urocanate hydratase; Provisional
Probab=49.91 E-value=40 Score=33.23 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=78.2
Q ss_pred HHHHHHcCCCeEe--CcCCCC--------CCchHHHHHHHhhcC---CCCCEEEEeecCcccCCCC----------CCCC
Q 019272 44 IHHAIDNGITFLD--TSDVYG--------PHTNEILLGKALKGG---YRERVELATKFGIINEDGQ----------FLYR 100 (343)
Q Consensus 44 l~~A~~~Gin~~D--TA~~Yg--------~g~sE~~lG~al~~~---~R~~~~i~tK~~~~~~~~~----------~~~~ 100 (343)
+...-+.|+..+- ||-.|- +|.-|+++..+-+.. .+.++++++=+|-.....+ ....
T Consensus 118 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vE 197 (556)
T PRK05414 118 FNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVE 197 (556)
T ss_pred HHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEEEE
Confidence 5566677876554 554431 256777766555432 4678888888875432110 0112
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcC
Q 019272 101 GDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAV 171 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 171 (343)
.++..| -+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-++.++++++.
T Consensus 198 vd~~ri-------~kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 198 VDESRI-------DKRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred ECHHHH-------HHHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc
Confidence 334433 468888999964 357899999999999999999999999888999888876
No 90
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=49.58 E-value=2e+02 Score=25.96 Aligned_cols=150 Identities=13% Similarity=0.077 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHH--HHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 019272 38 SDMIALIHHAIDNGITFLDTSDVYGPHTNEILL--GKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLK 115 (343)
Q Consensus 38 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~l--G~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~ 115 (343)
+...+.++..-+.|..+|..++.=|.+..+..+ +..|++...-+. |..... .+.++..+...+.. +.
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~-i~Hlt~---------r~~n~~~l~~~L~~-~~ 83 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPT-VPHLTC---------IGATREEIREILRE-YR 83 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCe-eEEeee---------cCCCHHHHHHHHHH-HH
Confidence 445555666667899999998765543333333 333442111111 111111 13355666666653 37
Q ss_pred hcCCCcccEEEecC-CC------CCCCHHHHHHHHHHHHHcCCcceEecCCCcH---------HHHHHHhcC----CCee
Q 019272 116 RLDVDYIDLYYQHR-ID------TKVPIEITIGELKKLVEEGKIKYIGLSEASA---------STIRRAHAV----HPIT 175 (343)
Q Consensus 116 rLg~d~iDl~~lH~-~~------~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~---------~~l~~~~~~----~~~~ 175 (343)
.+|++. ++.|-. +. ....+....+-++.+++..---+||+..++. ..++.+... ..+-
T Consensus 84 ~~Gi~n--vL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~ 161 (272)
T TIGR00676 84 ELGIRH--ILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYA 161 (272)
T ss_pred HCCCCE--EEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 777432 232332 21 1122334555555555542235788776431 233333222 3455
Q ss_pred EecccccccccchhhhhHHHHHHhCCeE
Q 019272 176 AVQLEWSLWTRDAEAEIVPTCRELGIGI 203 (343)
Q Consensus 176 ~~q~~~~~~~~~~~~~ll~~~~~~gi~v 203 (343)
+-|.-|+. ..-.++++.|++.||.+
T Consensus 162 iTQ~~fd~---~~~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 162 ITQLFFDN---DDYYRFVDRCRAAGIDV 186 (272)
T ss_pred eeccccCH---HHHHHHHHHHHHcCCCC
Confidence 55665554 22357899999998664
No 91
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=49.05 E-value=2.1e+02 Score=26.14 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=52.0
Q ss_pred hhhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhccccchhhhhHHHHHHHHHHHHHHHHhCC------CH
Q 019272 189 EAEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSLPRFQAENLEHNKKLFERVNEIAAKKGC------TP 262 (343)
Q Consensus 189 ~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~~~------s~ 262 (343)
+..+.+.+.+.++-++..++-.+. ..+|.++|++.|. ++
T Consensus 203 Q~Avk~la~~~Dl~iVVG~~nSSN-----------------------------------s~rL~eiA~~~g~~aylId~~ 247 (294)
T COG0761 203 QDAVKELAPEVDLVIVVGSKNSSN-----------------------------------SNRLAEIAKRHGKPAYLIDDA 247 (294)
T ss_pred HHHHHHHhhcCCEEEEECCCCCcc-----------------------------------HHHHHHHHHHhCCCeEEeCCh
Confidence 567888888888888877765431 1378899999887 67
Q ss_pred HHHHHHHHHhcCCCeeeccCCCcHHHHHHHH
Q 019272 263 SQLALAWVHHQGDDVCPIPGTTKIENLNQNI 293 (343)
Q Consensus 263 ~q~al~~~l~~~~v~~~i~g~~~~~~l~enl 293 (343)
.++=..|+-.... ..+-.|+|+++-|-+++
T Consensus 248 ~ei~~~w~~~~~~-VGvTAGAStPd~lV~~V 277 (294)
T COG0761 248 EEIDPEWLKGVKT-VGVTAGASTPDWLVQEV 277 (294)
T ss_pred HhCCHHHhcCccE-EEEecCCCCCHHHHHHH
Confidence 8888899877543 45568999999887765
No 92
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=48.63 E-value=2e+02 Score=25.61 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=35.4
Q ss_pred hhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhccccchhhhhHHHHHHHHHHHHHHHHhCCC
Q 019272 190 AEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSLPRFQAENLEHNKKLFERVNEIAAKKGCT 261 (343)
Q Consensus 190 ~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~~~s 261 (343)
...+++|+..|...+...|...|... ...+.++...+.++.+.++|+++|+.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYLT--------------------PPNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCC--------------------CHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 46789999999999887664332110 01233456667788889999998874
No 93
>PRK12569 hypothetical protein; Provisional
Probab=48.45 E-value=78 Score=28.21 Aligned_cols=81 Identities=17% Similarity=0.253 Sum_probs=55.9
Q ss_pred ccccccCCCCCCCCCC--HHHHHHHHHHH-HHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCC--C
Q 019272 21 GLGCMGMSAFYGPPKP--ESDMIALIHHA-IDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINED--G 95 (343)
Q Consensus 21 glG~~~~~~~~~~~~~--~~~~~~~l~~A-~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~--~ 95 (343)
+||.|.+| + +++...+|..| +.+|+ |.| ....+-+.++--....+-|-..-++.... +
T Consensus 14 sfG~~~~g-------~~~D~~lmp~ItsaNIACG~-------HAG---Dp~~M~~tv~lA~~~~V~IGAHPsyPD~~gFG 76 (245)
T PRK12569 14 GFGPWRIG-------DGVDEALMPLISSANIATGF-------HAG---DPNIMRRTVELAKAHGVGIGAHPGFRDLVGFG 76 (245)
T ss_pred CCCCcCCC-------CccHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCEeccCCCCCcCCCCC
Confidence 77888875 4 67777877777 46666 677 56677777765456677777776655432 2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC
Q 019272 96 QFLYRGDPAYVRAACEASLKRLD 118 (343)
Q Consensus 96 ~~~~~~s~~~i~~~~~~SL~rLg 118 (343)
......+++.+...+...+..|.
T Consensus 77 Rr~m~~s~~el~~~v~yQigaL~ 99 (245)
T PRK12569 77 RRHINASPQELVNDVLYQLGALR 99 (245)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Confidence 34457788888888877777664
No 94
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=47.88 E-value=1.3e+02 Score=25.59 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=28.5
Q ss_pred HHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHH
Q 019272 112 ASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASAST 164 (343)
Q Consensus 112 ~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~ 164 (343)
+....++ +|.+|||..++ .+..+.+.+......++.+|++.+....
T Consensus 67 ~ia~~~~---~d~Vqlhg~e~----~~~~~~l~~~~~~~~i~~i~~~~~~~~~ 112 (203)
T cd00405 67 EIAEELG---LDVVQLHGDES----PEYCAQLRARLGLPVIKAIRVKDEEDLE 112 (203)
T ss_pred HHHHhcC---CCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCChhhHH
Confidence 3344555 78999998652 2234444443344678999999875443
No 95
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=47.52 E-value=2.2e+02 Score=25.75 Aligned_cols=130 Identities=15% Similarity=0.106 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---cCCCCCC----chHHHHHHHhhcCCC-CCEEEEeecCcccCCCCCCCCCCHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDT---SDVYGPH----TNEILLGKALKGGYR-ERVELATKFGIINEDGQFLYRGDPAYVR 107 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DT---A~~Yg~g----~sE~~lG~al~~~~R-~~~~i~tK~~~~~~~~~~~~~~s~~~i~ 107 (343)
+.++..+..+.+.+.|+..|+. +++...+ ...+.+.+.++...+ -++-|..|+... .+.+.+.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~---------~~~~~~~ 179 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY---------FDLEDIV 179 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC---------CCHHHHH
Confidence 5677888888889999999995 3433221 234555555554211 156788898753 2444544
Q ss_pred HHHHHHHHhcCCCcccEEEecCCCCC-------------C---C------HHHHHHHHHHHHHcC--CcceEecCCC-cH
Q 019272 108 AACEASLKRLDVDYIDLYYQHRIDTK-------------V---P------IEITIGELKKLVEEG--KIKYIGLSEA-SA 162 (343)
Q Consensus 108 ~~~~~SL~rLg~d~iDl~~lH~~~~~-------------~---~------~~~~~~~L~~l~~~G--~ir~iGvs~~-~~ 162 (343)
+.+ +.++..|. |.+.+|+-... . . ..-.++.+.++++.= .+.-||.... ++
T Consensus 180 ~~a-~~l~~~Ga---d~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~ 255 (289)
T cd02810 180 ELA-KAAERAGA---DGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSG 255 (289)
T ss_pred HHH-HHHHHcCC---CEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCH
Confidence 433 35677785 44555532110 0 0 011355566665543 5666666664 35
Q ss_pred HHHHHHhcCCCeeEecc
Q 019272 163 STIRRAHAVHPITAVQL 179 (343)
Q Consensus 163 ~~l~~~~~~~~~~~~q~ 179 (343)
+++.+++... .+.+|+
T Consensus 256 ~da~~~l~~G-Ad~V~v 271 (289)
T cd02810 256 EDVLEMLMAG-ASAVQV 271 (289)
T ss_pred HHHHHHHHcC-ccHheE
Confidence 6666666533 455554
No 96
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=47.41 E-value=1.1e+02 Score=27.23 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHH--------------------HhhcCCCCCEEEEeecCcccCC
Q 019272 35 KPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGK--------------------ALKGGYRERVELATKFGIINED 94 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~--------------------al~~~~R~~~~i~tK~~~~~~~ 94 (343)
.+.++..++.++|-+.||.||=|.-.-. +=.++-+ .+.+ ....++|+|=..
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~s----- 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMS----- 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHH-hCCcEEEECCCC-----
Confidence 4788899999999999999997764221 2222211 1111 234455655432
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCC-CCCHHH-HHHHHHHHHHcCCcceEecCCCcH
Q 019272 95 GQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDT-KVPIEI-TIGELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 95 ~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~-~~~~~~-~~~~L~~l~~~G~ir~iGvs~~~~ 162 (343)
+-+.|.++++...++-+ -++.++|.... ..+.++ -++.+..|++.=- --||+|.|+.
T Consensus 124 -------tl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~ 182 (241)
T PF03102_consen 124 -------TLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTD 182 (241)
T ss_dssp --------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SS
T ss_pred -------CHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCC
Confidence 45667777766644444 68999998743 233443 3666777765422 5779998875
No 97
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=47.38 E-value=1.9e+02 Score=25.14 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhc---CCCeeE
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHA---VHPITA 176 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~---~~~~~~ 176 (343)
.++.+. +..+-+.|.++|+++|++- .|.......+.++.+.+.... .+..+++......++...+ ...++.
T Consensus 10 ~~~~~~-k~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 10 AFSTEE-KLEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp T--HHH-HHHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred CcCHHH-HHHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 345554 4555567999999999887 332222223445555555555 4444555566666666443 233344
Q ss_pred ecccccccc--c------------chhhhhHHHHHHhCCeE
Q 019272 177 VQLEWSLWT--R------------DAEAEIVPTCRELGIGI 203 (343)
Q Consensus 177 ~q~~~~~~~--~------------~~~~~ll~~~~~~gi~v 203 (343)
+.+..+.-+ . ..-.+.+.++++.|+.+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 433333222 0 01246789999999998
No 98
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=47.32 E-value=2.1e+02 Score=25.52 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=36.0
Q ss_pred HHHHHHcCCcceEec--CCCcHHHHHHHhcC-CCeeEecccccccccchhhhhHHHHHHhCCeEEeccc
Q 019272 143 LKKLVEEGKIKYIGL--SEASASTIRRAHAV-HPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSP 208 (343)
Q Consensus 143 L~~l~~~G~ir~iGv--s~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~p 208 (343)
|.+..++|+. .+|+ ...++..++.+... ..+.++-++.++.+...-..++..++..|+.+++.-|
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 4445556774 3443 33445555554443 3444445567776543334566777777877777654
No 99
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=47.31 E-value=2e+02 Score=27.48 Aligned_cols=46 Identities=9% Similarity=0.174 Sum_probs=26.2
Q ss_pred cHHHHHHHhcCCCeeEecccccccccc-------hhhhhHHHHHHhCCeEEecc
Q 019272 161 SASTIRRAHAVHPITAVQLEWSLWTRD-------AEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 161 ~~~~l~~~~~~~~~~~~q~~~~~~~~~-------~~~~ll~~~~~~gi~v~a~~ 207 (343)
+.+++++....... ...+-+|+.++. ....+.+.|++|||.||+=.
T Consensus 146 D~~~LE~~~~~~~v-kl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDE 198 (388)
T COG1168 146 DFDALEKAFVDERV-KLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDE 198 (388)
T ss_pred cHHHHHHHHhcCCc-cEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeec
Confidence 45566665555431 122233443332 22478899999999999733
No 100
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=47.25 E-value=1.1e+02 Score=29.37 Aligned_cols=60 Identities=17% Similarity=0.050 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEEecC-CCCC------------CCHHH---HH-HHHHHHHHcCCcceEecCCCcH
Q 019272 101 GDPAYVRAACEASLKRLDVDYIDLYYQHR-IDTK------------VPIEI---TI-GELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rLg~d~iDl~~lH~-~~~~------------~~~~~---~~-~~L~~l~~~G~ir~iGvs~~~~ 162 (343)
-+.+.+.+.++..+ +|+.++|.+|.+.- |... .+.++ .+ .+.+.|.+.|. .++++|||..
T Consensus 179 qt~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeisnfa~ 255 (400)
T PRK07379 179 QTLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGY-EHYEISNYAK 255 (400)
T ss_pred CCHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-ceeeeeheEC
Confidence 46677777776554 47888888887752 2110 01111 22 35566777787 4688988864
No 101
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=46.94 E-value=29 Score=23.67 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHH
Q 019272 250 RVNEIAAKKGCTPSQLALAWVH 271 (343)
Q Consensus 250 ~l~~ia~~~~~s~~q~al~~~l 271 (343)
...+||+++|+++.++|..|+-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4678999999999999999974
No 102
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=46.08 E-value=2.5e+02 Score=26.16 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEecccccccccchhhhhHHHHHHhCCeEEecccCccc
Q 019272 140 IGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 140 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G 212 (343)
++.+.+++++-.+. +.|=|-++...+.+++.....+++|+..+.+-. -.+.+..|+++||.++..+.+..+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG--it~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG--VRAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC--HHHHHHHHHHcCCcEEEeCCcccH
Confidence 45566665553332 445556777888888888888888887776543 246778899999999988776554
No 103
>PRK05588 histidinol-phosphatase; Provisional
Probab=46.07 E-value=1.6e+02 Score=26.11 Aligned_cols=79 Identities=11% Similarity=0.229 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCCCCC---------chHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHH
Q 019272 38 SDMIALIHHAIDNGITFLDTSDVYGPH---------TNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRA 108 (343)
Q Consensus 38 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g---------~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~ 108 (343)
....+.++.|.+.|+..+ .++|.... .-+..+ +.+++....++.+.--++.. ++ -..
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~~~~I~~GiE~~~~-----------~~-~~~ 81 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYRNNKLLLGIELGME-----------KD-LIE 81 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHhcCCcceEEEeccc-----------CC-CHH
Confidence 346789999999999999 77763110 011122 11222222344443333322 22 346
Q ss_pred HHHHHHHhcCCCcccEEEecCCC
Q 019272 109 ACEASLKRLDVDYIDLYYQHRID 131 (343)
Q Consensus 109 ~~~~SL~rLg~d~iDl~~lH~~~ 131 (343)
.+++.|++...||+ +.-+|+.+
T Consensus 82 ~~~~~l~~~~~D~v-igSvH~~~ 103 (255)
T PRK05588 82 ENKELINKYEFDYV-IGSIHLVD 103 (255)
T ss_pred HHHHHHhhCCCCeE-EEeEEeeC
Confidence 66778888888887 78899864
No 104
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=45.91 E-value=3e+02 Score=27.15 Aligned_cols=172 Identities=15% Similarity=0.188 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHc-CCCeEeCcCCCCCCc---hHHHHHHH--hhc-CCCCCEEEEeecCc--ccCC-----------C
Q 019272 36 PESDMIALIHHAIDN-GITFLDTSDVYGPHT---NEILLGKA--LKG-GYRERVELATKFGI--INED-----------G 95 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~-Gin~~DTA~~Yg~g~---sE~~lG~a--l~~-~~R~~~~i~tK~~~--~~~~-----------~ 95 (343)
+.++..++++.+++. +++.=|.+..+.... -|.+.-.| ++. ...+.+++.+=+.. .... .
T Consensus 29 ~~~~v~~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~Gn~I~lfapLyiSN~C~n~C~YCgfs~~n~ 108 (469)
T PRK09613 29 DKDEIREILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIYGNRIVLFAPLYISNYCVNNCVYCGFRRSNK 108 (469)
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHcCCEEEEEEeccccCCCCCCCccCCCccCCC
Confidence 566688888888873 666656555543211 12222222 222 12334444333221 1100 1
Q ss_pred -CCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHH----cCCcceEecCC--CcHHHHHHH
Q 019272 96 -QFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVE----EGKIKYIGLSE--ASASTIRRA 168 (343)
Q Consensus 96 -~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~----~G~ir~iGvs~--~~~~~l~~~ 168 (343)
......+.+.|.+.++. ++.+|...+-|+.=..| +..+++.+.+.++.+++ .|.++.++++- .+.+.++++
T Consensus 109 ~i~r~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~L 186 (469)
T PRK09613 109 EIKRKKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKL 186 (469)
T ss_pred CCCceECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHH
Confidence 11234688999999875 57899777766422222 33456767777777765 47777777643 566777777
Q ss_pred hcCC--CeeEecccccc-----ccc-----chh--hhhHHHHHHhCCeEEecccC
Q 019272 169 HAVH--PITAVQLEWSL-----WTR-----DAE--AEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 169 ~~~~--~~~~~q~~~~~-----~~~-----~~~--~~ll~~~~~~gi~v~a~~pl 209 (343)
.+.. .+..+|-.||. +.+ .++ -+.++.+++.|+.-+..+.|
T Consensus 187 keaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L 241 (469)
T PRK09613 187 KEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVL 241 (469)
T ss_pred HHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEE
Confidence 6653 34445555542 111 122 25778888889874444443
No 105
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=45.73 E-value=2.2e+02 Score=25.26 Aligned_cols=145 Identities=18% Similarity=0.248 Sum_probs=80.9
Q ss_pred HHHHHcCCCeEeCcC-CCCC-Cc-hHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCc
Q 019272 45 HHAIDNGITFLDTSD-VYGP-HT-NEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDY 121 (343)
Q Consensus 45 ~~A~~~Gin~~DTA~-~Yg~-g~-sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~ 121 (343)
..|++.|...||.-+ .-|. |. ...++- .++..-....-+|..+|-. .+.+..+..+....- .-|+||
T Consensus 14 ~~a~~~gaDiID~K~P~~GaLGA~~~~vi~-~i~~~~~~~~pvSAtiGDl--------p~~p~~~~~aa~~~a-~~Gvdy 83 (235)
T PF04476_consen 14 EEALAGGADIIDLKNPAEGALGALFPWVIR-EIVAAVPGRKPVSATIGDL--------PMKPGTASLAALGAA-ATGVDY 83 (235)
T ss_pred HHHHhCCCCEEEccCCCCCCCCCCCHHHHH-HHHHHcCCCCceEEEecCC--------CCCchHHHHHHHHHH-hcCCCE
Confidence 567889999999864 3331 22 334443 3333234446788888743 234555555554443 358888
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHH-------HHHcCCcceEecCCCc------HHHHHHHhcCCCeeEeccccc------
Q 019272 122 IDLYYQHRIDTKVPIEITIGELKK-------LVEEGKIKYIGLSEAS------ASTIRRAHAVHPITAVQLEWS------ 182 (343)
Q Consensus 122 iDl~~lH~~~~~~~~~~~~~~L~~-------l~~~G~ir~iGvs~~~------~~~l~~~~~~~~~~~~q~~~~------ 182 (343)
|=+=+.-..+ .++..+.|+. ...+.++-..+++.+. +..+-+......++.+++.--
T Consensus 84 vKvGl~g~~~----~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~ 159 (235)
T PF04476_consen 84 VKVGLFGCKD----YDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGGS 159 (235)
T ss_pred EEEecCCCCC----HHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCCc
Confidence 8776653322 2333333333 2334567788888763 445555555555666665422
Q ss_pred cccc---chhhhhHHHHHHhCCeE
Q 019272 183 LWTR---DAEAEIVPTCRELGIGI 203 (343)
Q Consensus 183 ~~~~---~~~~~ll~~~~~~gi~v 203 (343)
+++. ..-.++.+.|+++|+.+
T Consensus 160 L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 160 LFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHccchh
Confidence 2221 11246888888888754
No 106
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=45.65 E-value=1.7e+02 Score=24.16 Aligned_cols=98 Identities=18% Similarity=0.129 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCC-CEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRE-RVELATKFGIINEDGQFLYRGDPAYVRAACEASL 114 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~-~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL 114 (343)
+.+...++++.+++.|++-+-+.. .++-.+.+. ..+ ++-|..+++.... ....+...+.+++.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~~~------~~~~~~~~~~a~~a- 74 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFPTG------LTTTEVKVAEVEEA- 74 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCCCC------CCcHHHHHHHHHHH-
Confidence 678899999999999999887663 333333333 234 6777778775321 01134455555554
Q ss_pred HhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHc
Q 019272 115 KRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEE 149 (343)
Q Consensus 115 ~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~ 149 (343)
.++|.|.+.+..-+........+++.+.+.++.+.
T Consensus 75 ~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 75 IDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred HHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH
Confidence 45586555543222211111134455555555543
No 107
>PRK05660 HemN family oxidoreductase; Provisional
Probab=45.60 E-value=1.3e+02 Score=28.56 Aligned_cols=61 Identities=10% Similarity=0.013 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEec-CCCC-------CC-CHHHHHH----HHHHHHHcCCcceEecCCCcH
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQH-RIDT-------KV-PIEITIG----ELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH-~~~~-------~~-~~~~~~~----~L~~l~~~G~ir~iGvs~~~~ 162 (343)
..+.+.+.+.++..++ |+.++|.+|.+- .|+. .. +.++.++ +.+.|.+.|. ..+++|||..
T Consensus 170 gqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 243 (378)
T PRK05660 170 DQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAK 243 (378)
T ss_pred CCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccC
Confidence 3467778777777554 889999888774 2221 01 1122222 3445666676 5578888864
No 108
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=45.59 E-value=1.5e+02 Score=25.99 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=50.0
Q ss_pred cHHHHHHHhcCCCeeEe----cccccccccch---hhhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhcc
Q 019272 161 SASTIRRAHAVHPITAV----QLEWSLWTRDA---EAEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSL 233 (343)
Q Consensus 161 ~~~~l~~~~~~~~~~~~----q~~~~~~~~~~---~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~ 233 (343)
++.+++.+.+...+.++ ..+||.|.... ...+.++++..|-.-+.+.|+..|.-. ... .
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~---~~~--v--------- 115 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWP---GTA--V--------- 115 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCC---Ccc--c---------
Confidence 45566665555443333 22566665431 257999999999999999999876322 000 0
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHhCC
Q 019272 234 PRFQAENLEHNKKLFERVNEIAAKKGC 260 (343)
Q Consensus 234 p~~~~~~~~~~~~~~~~l~~ia~~~~~ 260 (343)
........+++++.|..++|+
T Consensus 116 ------r~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 116 ------RREDLVEALKALKPILDEYGI 136 (272)
T ss_pred ------chHHHHHHHHHhhHHHHHhCc
Confidence 013345567788888888876
No 109
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=45.36 E-value=1.4e+02 Score=26.44 Aligned_cols=112 Identities=16% Similarity=0.087 Sum_probs=61.7
Q ss_pred CccccccccCCCCCCCCCCHHHHHHHHHHHHH-cCCCeEeCcCC---CCCCchHHHHHHHhhcCCCCCEEEEeecCcccC
Q 019272 18 SAQGLGCMGMSAFYGPPKPESDMIALIHHAID-NGITFLDTSDV---YGPHTNEILLGKALKGGYRERVELATKFGIINE 93 (343)
Q Consensus 18 s~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~-~Gin~~DTA~~---Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~ 93 (343)
|+|-+||..+. +. +++..|++ .|-..+=.|=- .+....+. ..+.-.+++++.+--...
T Consensus 9 SRL~lGTgky~-------s~----~~m~~ai~aSg~evvTvalRR~~~~~~~~~~---~~~~~i~~~~~~lLPNTa---- 70 (247)
T PF05690_consen 9 SRLILGTGKYP-------SP----EVMREAIEASGAEVVTVALRRVNLGSKPGGD---NILDYIDRSGYTLLPNTA---- 70 (247)
T ss_dssp -SEEEE-STSS-------SH----HHHHHHHHHTT-SEEEEECCGSTTTS-TTCH---HCCCCTTCCTSEEEEE-T----
T ss_pred cceEEecCCCC-------CH----HHHHHHHHHhCCcEEEEEEecccCCCCCCCc---cHHHHhcccCCEECCcCC----
Confidence 78999997763 23 45666664 47666655421 11000111 122222445554432221
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCC-CHHHHHHHHHHHHHcCCc
Q 019272 94 DGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKV-PIEITIGELKKLVEEGKI 152 (343)
Q Consensus 94 ~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~-~~~~~~~~L~~l~~~G~i 152 (343)
...+.+...+..+-..+-++++.|=|=.+.++.... +.-+++++-+.|+++|-+
T Consensus 71 -----Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~ 125 (247)
T PF05690_consen 71 -----GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV 125 (247)
T ss_dssp -----T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-E
T ss_pred -----CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCE
Confidence 245788888888999999999988887777665543 457999999999999963
No 110
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=45.24 E-value=2.5e+02 Score=25.87 Aligned_cols=97 Identities=15% Similarity=0.216 Sum_probs=66.8
Q ss_pred HHHHHHhcCCCcccEEEecCCCC-----CCCHHHHHHHHHHHHHcCCcce-EecCCC---cHHHHHHHhcCCCe-eEecc
Q 019272 110 CEASLKRLDVDYIDLYYQHRIDT-----KVPIEITIGELKKLVEEGKIKY-IGLSEA---SASTIRRAHAVHPI-TAVQL 179 (343)
Q Consensus 110 ~~~SL~rLg~d~iDl~~lH~~~~-----~~~~~~~~~~L~~l~~~G~ir~-iGvs~~---~~~~l~~~~~~~~~-~~~q~ 179 (343)
.+...+++| .|++-+|-... +.+.+|..+.|+++.+.=+|-. ||=|.. +++.++++.+...= .|...
T Consensus 156 Ark~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLa 232 (403)
T COG2069 156 ARKCVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLA 232 (403)
T ss_pred HHHHHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEee
Confidence 345567888 68888887643 3467899999999988877654 566664 57788888776332 23333
Q ss_pred cccccccchhhhhHHHHHHhCCeEEecccCcc
Q 019272 180 EWSLWTRDAEAEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 180 ~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~ 211 (343)
.-|+ +.. -+.+.+.+.++|=.|++|+++.-
T Consensus 233 Sanl-dlD-y~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 233 SANL-DLD-YERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred cccc-ccC-HHHHHHHHHhcCceEEEeeccCh
Confidence 3333 222 25789999999999999999864
No 111
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=44.95 E-value=1.5e+02 Score=29.01 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecC
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQHR 129 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~ 129 (343)
.-+.+.+++.++..+ .|+.++|++|.+.-
T Consensus 226 gqT~e~~~~~l~~~~-~l~~~~is~y~L~~ 254 (449)
T PRK09058 226 GQTPEIWQQDLAIVR-DLGLDGVDLYALNL 254 (449)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEecccc
Confidence 346676777666654 48888888887753
No 112
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=44.85 E-value=37 Score=27.16 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=21.2
Q ss_pred cchhhhhHHHHHHhCCeEEecccCc
Q 019272 186 RDAEAEIVPTCRELGIGIVAYSPLG 210 (343)
Q Consensus 186 ~~~~~~ll~~~~~~gi~v~a~~pl~ 210 (343)
+....++++.|++.||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4445789999999999999988876
No 113
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=44.58 E-value=2.7e+02 Score=26.08 Aligned_cols=153 Identities=12% Similarity=0.081 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCC--------chHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYGPH--------TNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVR 107 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g--------~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~ 107 (343)
+.++..+.+..+.+.|++.|=.--..+.+ ..+...=+++++.-.+++.|..=.. ..++.+.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN---------~~~~~~~-- 191 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFH---------GRVSKPM-- 191 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECC---------CCCCHHH--
Confidence 34556666777888999987653221110 1122222344442223444433221 1234433
Q ss_pred HHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEecccccccc-
Q 019272 108 AACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWT- 185 (343)
Q Consensus 108 ~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~- 185 (343)
..+-++.|. .+++.++-.|-+.. -++.+.+|+++.-+. +.|=|.++...+..++....++++|+.....-
T Consensus 192 --A~~~~~~l~--~~~i~~iEeP~~~~----d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GG 263 (352)
T cd03325 192 --AKDLAKELE--PYRLLFIEEPVLPE----NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGG 263 (352)
T ss_pred --HHHHHHhcc--ccCCcEEECCCCcc----CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCC
Confidence 333334442 23555555554322 377788888876555 55667788999999888878899998765543
Q ss_pred cchhhhhHHHHHHhCCeEEecc
Q 019272 186 RDAEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 186 ~~~~~~ll~~~~~~gi~v~a~~ 207 (343)
-..-.++.+.|+++||.++.++
T Consensus 264 it~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 264 ITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHHHHHcCCcEeccC
Confidence 1223589999999999998655
No 114
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=44.32 E-value=1.5e+02 Score=28.16 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecC-CCC-----------CCC-HH---HH-HHHHHHHHHcCCcceEecCCCcH
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQHR-IDT-----------KVP-IE---IT-IGELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~-~~~-----------~~~-~~---~~-~~~L~~l~~~G~ir~iGvs~~~~ 162 (343)
.-+.+.+.+.++..+ .|+.++|.+|.+.- |.. ..+ .+ +. ..+.+.|.+.|. .++++|||..
T Consensus 166 gqt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 166 TQSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CCCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 347788888887766 48899999988863 221 001 11 12 234555667776 5578888864
No 115
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=44.30 E-value=2.3e+02 Score=25.25 Aligned_cols=113 Identities=14% Similarity=0.100 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCC-----------CCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCH
Q 019272 35 KPESDMIALIHHAIDNGITFLDTSDV-----------YGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDP 103 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA~~-----------Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~ 103 (343)
.+.++..++++...+.||..++.... |-.-..++.+.+..+..+..++.+..-.+ ....
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~----------~~~~ 88 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPG----------IGTV 88 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCC----------ccCH
Confidence 47788999999999999999999721 11112445554444433333332221100 1123
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecC---CCcHHHHHH
Q 019272 104 AYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLS---EASASTIRR 167 (343)
Q Consensus 104 ~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs---~~~~~~l~~ 167 (343)
+. ++..++ .|++.+-++. ...+.....+.++..++.|.--.+.++ .++++.+.+
T Consensus 89 ~~----i~~a~~-~g~~~iri~~-----~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~ 145 (263)
T cd07943 89 DD----LKMAAD-LGVDVVRVAT-----HCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAE 145 (263)
T ss_pred HH----HHHHHH-cCCCEEEEEe-----chhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHH
Confidence 33 344333 3655554433 122345677788888888875555542 244554433
No 116
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=43.77 E-value=2.4e+02 Score=25.30 Aligned_cols=103 Identities=16% Similarity=0.107 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc-CCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTS-DVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASL 114 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA-~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL 114 (343)
+.++..++++...+.||..|+.. +.++. .+.-.-+.+....+. +++... .....+.++++++
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~--~~~~~~~~l~~~~~~-----~~v~~~-------~r~~~~di~~a~~--- 82 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTSPAASP--QSRADCEAIAKLGLK-----AKILTH-------IRCHMDDARIAVE--- 82 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCH--HHHHHHHHHHhCCCC-----CcEEEE-------ecCCHHHHHHHHH---
Confidence 67888999999999999999986 33332 222222333322221 111111 0223444555443
Q ss_pred HhcCCCcccEEEecCC-----CCCCCHH----HHHHHHHHHHHcCCcceEec
Q 019272 115 KRLDVDYIDLYYQHRI-----DTKVPIE----ITIGELKKLVEEGKIKYIGL 157 (343)
Q Consensus 115 ~rLg~d~iDl~~lH~~-----~~~~~~~----~~~~~L~~l~~~G~ir~iGv 157 (343)
.|++.|.++.-=++ ......+ .+.+.++.+++.|.--.+++
T Consensus 83 --~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 83 --TGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred --cCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 47777776552111 0112233 34555577777787555555
No 117
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=43.26 E-value=1.2e+02 Score=27.19 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHhcCC--------------------------CcccEEEecCCCCCCCH---HHHHHHHHHHHHcCCc
Q 019272 102 DPAYVRAACEASLKRLDV--------------------------DYIDLYYQHRIDTKVPI---EITIGELKKLVEEGKI 152 (343)
Q Consensus 102 s~~~i~~~~~~SL~rLg~--------------------------d~iDl~~lH~~~~~~~~---~~~~~~L~~l~~~G~i 152 (343)
+.+. ++.++++|++.|. ...|+++|.-|....+. .++++-|.+|+++|+
T Consensus 113 ~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~- 190 (254)
T COG1121 113 NKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK- 190 (254)
T ss_pred cHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC-
Confidence 4444 7888999999886 45688888888766664 468999999999987
Q ss_pred ceEecCCCcHHHHHHHhc
Q 019272 153 KYIGLSEASASTIRRAHA 170 (343)
Q Consensus 153 r~iGvs~~~~~~l~~~~~ 170 (343)
.|=+.+|+...+.+..+
T Consensus 191 -tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 191 -TVLMVTHDLGLVMAYFD 207 (254)
T ss_pred -EEEEEeCCcHHhHhhCC
Confidence 77778888777655543
No 118
>PRK09061 D-glutamate deacylase; Validated
Probab=43.24 E-value=2.2e+02 Score=28.43 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcC
Q 019272 39 DMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLD 118 (343)
Q Consensus 39 ~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg 118 (343)
+..++++.|++.|+..|=+...|-.+.+...+-+.++...+-...|...+.... ..+......++++.++...
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~-------~~~~~~e~~av~~~i~lA~ 242 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLS-------NVDPRSSVDAYQELIAAAA 242 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcc-------cCCchhHHHHHHHHHHHHH
Confidence 367888899999999998766675555666666666543444566666553211 0111222334444443322
Q ss_pred CCcccEEEecCCCC-CCCHHHHHHHHHHHHHcCCcceEecC
Q 019272 119 VDYIDLYYQHRIDT-KVPIEITIGELKKLVEEGKIKYIGLS 158 (343)
Q Consensus 119 ~d~iDl~~lH~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvs 158 (343)
.--.-+...|-... .....+.++.+++++++|.--..-++
T Consensus 243 ~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 243 ETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred HhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEec
Confidence 11134666665432 23457788999999999864433343
No 119
>PLN02363 phosphoribosylanthranilate isomerase
Probab=42.60 E-value=72 Score=28.68 Aligned_cols=74 Identities=22% Similarity=0.313 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHHhcCCCeeEeccc
Q 019272 102 DPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLE 180 (343)
Q Consensus 102 s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~ 180 (343)
+.+.++.+. ++|.||+=+++..........+. .+.+........++.+||. |-+++.+.++++...++++|+.
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e~-a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRSISLSV-AKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHHH-HHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 445554443 58999999975443333333433 3333333333246679995 7888999999998999999986
Q ss_pred c
Q 019272 181 W 181 (343)
Q Consensus 181 ~ 181 (343)
-
T Consensus 130 G 130 (256)
T PLN02363 130 G 130 (256)
T ss_pred C
Confidence 4
No 120
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=42.43 E-value=2.9e+02 Score=25.73 Aligned_cols=95 Identities=17% Similarity=0.119 Sum_probs=50.6
Q ss_pred CCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCC----CCH--HHHHHHHHHHHHcCC
Q 019272 78 YRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTK----VPI--EITIGELKKLVEEGK 151 (343)
Q Consensus 78 ~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~----~~~--~~~~~~L~~l~~~G~ 151 (343)
-.+++.|..|+...... ....+.+... .+-+.|+..|+|+|+ +|..... .+. ...++.++++++.-.
T Consensus 218 vG~d~~v~vri~~~~~~---~~g~~~~e~~-~ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~ 290 (336)
T cd02932 218 WPEDKPLFVRISATDWV---EGGWDLEDSV-ELAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAERIRQEAG 290 (336)
T ss_pred cCCCceEEEEEcccccC---CCCCCHHHHH-HHHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHHHHhhCC
Confidence 34567788888753110 0123444332 344456677765555 4421110 011 112455566666656
Q ss_pred cceEecCCC-cHHHHHHHhcCCCeeEecc
Q 019272 152 IKYIGLSEA-SASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 152 ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 179 (343)
|--++..+. +++.++++++....+.+++
T Consensus 291 iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 291 IPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 666776664 6777777777766666655
No 121
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=42.21 E-value=74 Score=27.53 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=54.1
Q ss_pred HHhcCCCcccEEEec-CCCC-CCCHH----HHHHHHHHHHH--cCCcceEecCCCcHHHHHHHhcCCCeeEecccccccc
Q 019272 114 LKRLDVDYIDLYYQH-RIDT-KVPIE----ITIGELKKLVE--EGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWT 185 (343)
Q Consensus 114 L~rLg~d~iDl~~lH-~~~~-~~~~~----~~~~~L~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~ 185 (343)
+..-|-|+||+=--- +|.. ..+.+ .+...++.+++ .+. -+.+-++.++.++.+++. ..+.+-...+. .
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~-~ 103 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGF-E 103 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTT-S
T ss_pred HHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEecccc-c
Confidence 344588999984322 2221 12222 34555555554 333 567778899999999887 43333211111 1
Q ss_pred cchhhhhHHHHHHhCCeEEecccC
Q 019272 186 RDAEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 186 ~~~~~~ll~~~~~~gi~v~a~~pl 209 (343)
. ..++++.++++|..++++..-
T Consensus 104 ~--~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 104 D--DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp S--STTHHHHHHHHTSEEEEESES
T ss_pred c--cchhhhhhhcCCCEEEEEecc
Confidence 1 468999999999999987655
No 122
>PRK06361 hypothetical protein; Provisional
Probab=41.97 E-value=2.2e+02 Score=24.30 Aligned_cols=184 Identities=15% Similarity=0.123 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHH---H---HhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHH
Q 019272 39 DMIALIHHAIDNGITFLDTSDVYGPHTNEILLG---K---ALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEA 112 (343)
Q Consensus 39 ~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG---~---al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~ 112 (343)
...++++.|.+.|+..|=-++|.....-...+- + .++....=+++...-+... .++.+ ..+.+
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~~----------~~~~~-~~~~~ 79 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEVIPGVELTHV----------PPKLI-PKLAK 79 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEccc----------Cchhh-chHHH
Confidence 367899999999999998887754211111111 1 1111111122333322211 12222 33445
Q ss_pred HHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCC-cHHHHHHHhcCCCeeEecccccccccchhhh
Q 019272 113 SLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEA-SASTIRRAHAVHPITAVQLEWSLWTRDAEAE 191 (343)
Q Consensus 113 SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ 191 (343)
.+.+++ +|+..+|......+.. ...-..+.+.|.+.-+|=-.. ..+.++.+.+.... +.+......+.....
T Consensus 80 ~~~~~~---~~~~svH~~~~~~~~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~--lEin~~~~~~~~~~~ 152 (212)
T PRK06361 80 KARDLG---AEIVVVHGETIVEPVE--EGTNLAAIECEDVDILAHPGLITEEEAELAAENGVF--LEITARKGHSLTNGH 152 (212)
T ss_pred HHHHCC---CEEEEECCCCcchhhh--hhhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCeE--EEEECCCCcccchHH
Confidence 666665 5677899543222111 111144667777655543322 22334333333221 222211112223457
Q ss_pred hHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 019272 192 IVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSLPRFQAENLEHNKKLFERVNEIAAKKGCTPSQLALAWV 270 (343)
Q Consensus 192 ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~ 270 (343)
+++.+++.|+.++.-+.... | .. ....+.+..++.+.|.+..++--.+.
T Consensus 153 ~l~~a~~~gi~vv~~SDaH~----------------------~-------~d-~~~~~~~~~i~~~~gl~~~~v~~~~~ 201 (212)
T PRK06361 153 VARIAREAGAPLVINTDTHA----------------------P-------SD-LITYEFARKVALGAGLTEKELEEALE 201 (212)
T ss_pred HHHHHHHhCCcEEEECCCCC----------------------H-------HH-HHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999776655431 0 00 11245788888888988888765443
No 123
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=41.78 E-value=3.1e+02 Score=25.89 Aligned_cols=152 Identities=9% Similarity=0.042 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCC--chHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYGPH--TNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEAS 113 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g--~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~S 113 (343)
+.++..+.++.+.+.|++.|=.- .++.. ......=+++++.--+++.|.-=.. ..++.+... .+-+.
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan---------~~~~~~~A~-~~~~~ 211 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGPDMRLMHDGA---------HWYSRADAL-RLGRA 211 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCCCCeEEEECC---------CCcCHHHHH-HHHHH
Confidence 45667777888899999988552 22211 0111122334432223433332211 123444322 22233
Q ss_pred HHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCc-HHHHHHHhcCCCeeEeccccccccc-chhh
Q 019272 114 LKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIK-YIGLSEAS-ASTIRRAHAVHPITAVQLEWSLWTR-DAEA 190 (343)
Q Consensus 114 L~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~-~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~ 190 (343)
|+.+ ++.++-.|-+ .. -++.+.+|+++-.|. ..|=+-++ ...++.+++...++++|+..+.+-- ..-.
T Consensus 212 l~~~-----~l~~iEeP~~---~~-d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~ 282 (368)
T cd03329 212 LEEL-----GFFWYEDPLR---EA-SISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAM 282 (368)
T ss_pred hhhc-----CCCeEeCCCC---ch-hHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHH
Confidence 4444 4444444432 22 247777888875554 23334466 8888999888888999998776432 2235
Q ss_pred hhHHHHHHhCCeEEecc
Q 019272 191 EIVPTCRELGIGIVAYS 207 (343)
Q Consensus 191 ~ll~~~~~~gi~v~a~~ 207 (343)
++...|+++||.++.++
T Consensus 283 ~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 283 KTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHcCCEEEEEC
Confidence 89999999999997654
No 124
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=41.68 E-value=69 Score=31.64 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=72.5
Q ss_pred HHHHHHHcCCCeEe--CcCCCC--------CCchHHHHHHHhhc---CCCCCEEEEeecCcccCC--------C--CCCC
Q 019272 43 LIHHAIDNGITFLD--TSDVYG--------PHTNEILLGKALKG---GYRERVELATKFGIINED--------G--QFLY 99 (343)
Q Consensus 43 ~l~~A~~~Gin~~D--TA~~Yg--------~g~sE~~lG~al~~---~~R~~~~i~tK~~~~~~~--------~--~~~~ 99 (343)
-.++..+.|+..+- ||-.|. +|.-|+++..+-+. ..+.++++++=+|-.... + ....
T Consensus 107 ~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~v 186 (546)
T PF01175_consen 107 HFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLIV 186 (546)
T ss_dssp HHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEEE
T ss_pred HHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEEE
Confidence 46667778887665 665442 14566665544332 367889999988754221 0 0012
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcC---CCeeE
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAV---HPITA 176 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~~ 176 (343)
..+++.| -+|+.+.|+|.+. .+++++++..++.+++|+..+||+-..-++.++++.+. +.+.+
T Consensus 187 Evd~~ri-------~kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~t 252 (546)
T PF01175_consen 187 EVDPSRI-------EKRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVT 252 (546)
T ss_dssp ES-HHHH-------HHHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE-
T ss_pred EECHHHH-------HHHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCccc
Confidence 3344444 4677788999753 56899999999999999999999999888888888776 33444
Q ss_pred ecccc
Q 019272 177 VQLEW 181 (343)
Q Consensus 177 ~q~~~ 181 (343)
-|...
T Consensus 253 DQTS~ 257 (546)
T PF01175_consen 253 DQTSA 257 (546)
T ss_dssp --SST
T ss_pred CCCcc
Confidence 46544
No 125
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=41.66 E-value=1.3e+02 Score=28.14 Aligned_cols=133 Identities=16% Similarity=0.180 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHHHcC-CCeEeCcCCCCCCchHHHHHHHhhcCC-CCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHH
Q 019272 35 KPESDMIALIHHAIDNG-ITFLDTSDVYGPHTNEILLGKALKGGY-RERVELATKFGIINEDGQFLYRGDPAYVRAACEA 112 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~G-in~~DTA~~Yg~g~sE~~lG~al~~~~-R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~ 112 (343)
.+.++..+.-+.|-+.| .+|...|..++.|+.=..+-++++... --.+-+.--+|. .+.+ --+
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~----------l~~e-----q~~ 148 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGM----------LTEE-----QAE 148 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCC----------CCHH-----HHH
Confidence 35666666677778899 899999988874344444445554421 112334434442 2323 334
Q ss_pred HHHhcCCCcccEEEecCCCC----------CCCHHHHHHHHHHHHHcCCcc----eEecCCCcHHHHHHHhcCCCee-Ee
Q 019272 113 SLKRLDVDYIDLYYQHRIDT----------KVPIEITIGELKKLVEEGKIK----YIGLSEASASTIRRAHAVHPIT-AV 177 (343)
Q Consensus 113 SL~rLg~d~iDl~~lH~~~~----------~~~~~~~~~~L~~l~~~G~ir----~iGvs~~~~~~l~~~~~~~~~~-~~ 177 (343)
-|+.-|+|++ -|+.+. ...+++-++.++.+++.|.=- -+|+..-..+.++.+......+ .-
T Consensus 149 ~L~~aGvd~y----nhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pd 224 (335)
T COG0502 149 KLADAGVDRY----NHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPD 224 (335)
T ss_pred HHHHcChhhe----ecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCC
Confidence 5777787663 565543 345789999999999998733 2455555555555444432222 34
Q ss_pred ccccccccc
Q 019272 178 QLEWSLWTR 186 (343)
Q Consensus 178 q~~~~~~~~ 186 (343)
.++.|.+.+
T Consensus 225 sVPIn~l~P 233 (335)
T COG0502 225 SVPINFLNP 233 (335)
T ss_pred eeeeeeecC
Confidence 455565554
No 126
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=41.43 E-value=61 Score=31.81 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=43.9
Q ss_pred HHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHHhcCCCeeEeccccc
Q 019272 114 LKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEWS 182 (343)
Q Consensus 114 L~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 182 (343)
...+|.|++-+++...-....+.+.+-+....+. ++.+||- |-+++.+.++++...++++|++-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 4558999998875443333344443322222222 8899997 678899999998899999998654
No 127
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=41.27 E-value=2.6e+02 Score=25.00 Aligned_cols=99 Identities=19% Similarity=0.127 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEE-EecCCCCC-CCHH-H---HHHHHHHHHHc-CCcceEecCCCcHHHHHHHhcCCC
Q 019272 101 GDPAYVRAACEASLKRLDVDYIDLY-YQHRIDTK-VPIE-I---TIGELKKLVEE-GKIKYIGLSEASASTIRRAHAVHP 173 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rLg~d~iDl~-~lH~~~~~-~~~~-~---~~~~L~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~ 173 (343)
.+++.+.+.+++.+ .-|.++||+= .--+|+.. .+.+ | +...++.+++. +. -+.+-+++++.++++++...
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 46677766666654 5688999983 11223322 1222 2 55556666655 43 48888999999999998743
Q ss_pred eeEecccccccccchhhhhHHHHHHhCCeEEecc
Q 019272 174 ITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 174 ~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~ 207 (343)
.-++-+ +... ..++++.++++|..++.+.
T Consensus 97 ~iINsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DIINDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CEEEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 222222 2221 3578999999999999854
No 128
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=40.45 E-value=98 Score=27.13 Aligned_cols=123 Identities=17% Similarity=0.252 Sum_probs=68.1
Q ss_pred HHHHHHHhcCCCcccEEEecCCC-CCCCHHHHHHHHHHHHHcCCcceEec----CCCcHHHHHHHhcCCCeeEecccccc
Q 019272 109 ACEASLKRLDVDYIDLYYQHRID-TKVPIEITIGELKKLVEEGKIKYIGL----SEASASTIRRAHAVHPITAVQLEWSL 183 (343)
Q Consensus 109 ~~~~SL~rLg~d~iDl~~lH~~~-~~~~~~~~~~~L~~l~~~G~ir~iGv----s~~~~~~l~~~~~~~~~~~~q~~~~~ 183 (343)
.++..=+-+|+. ++.+--.. .+...++..++|..|+ +..|.. |.+....++.+++...+.++- -+
T Consensus 50 ~~~~~Ae~~gi~---l~~~~~~g~~e~eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~---PL 119 (223)
T COG2102 50 LAELQAEAMGIP---LVTFDTSGEEEREVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLKVYA---PL 119 (223)
T ss_pred HHHHHHHhcCCc---eEEEecCccchhhHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCEEee---cc
Confidence 334444556644 33332222 2234566677777776 445544 334556677777765554331 23
Q ss_pred cccchhhhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhccccchhhhhHHHHHHHHHHHHHHHHhCCCHH
Q 019272 184 WTRDAEAEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSLPRFQAENLEHNKKLFERVNEIAAKKGCTPS 263 (343)
Q Consensus 184 ~~~~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~~~s~~ 263 (343)
+.++ ..+++...-+.|..++.-++-+.|+-. ...- ..++ .+.++.++.++++||+.++
T Consensus 120 Wg~d-~~ell~e~~~~Gf~~~Iv~Vsa~gL~~-----------~~lG---r~i~-------~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 120 WGRD-PEELLEEMVEAGFEAIIVAVSAEGLDE-----------SWLG---RRID-------REFLEELKSLNRRYGIHPA 177 (223)
T ss_pred cCCC-HHHHHHHHHHcCCeEEEEEEeccCCCh-----------HHhC---CccC-------HHHHHHHHHHHHhcCCCcc
Confidence 4444 457888778888877777777766532 0000 0111 2345688899999998763
No 129
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=40.36 E-value=1.5e+02 Score=26.74 Aligned_cols=77 Identities=16% Similarity=0.070 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcCCCeEeCcCCCCC-CchH---HHHHHHhhcC-CCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHH
Q 019272 37 ESDMIALIHHAIDNGITFLDTSDVYGP-HTNE---ILLGKALKGG-YRERVELATKFGIINEDGQFLYRGDPAYVRAACE 111 (343)
Q Consensus 37 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~-g~sE---~~lG~al~~~-~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~ 111 (343)
+++...+.+.|.+.|..|+=|+..|+. |.+. ++|-+.+++. ...+ +--|..-. =.+.+...+-++
T Consensus 146 ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGG--------Irt~~~A~~~i~ 215 (257)
T PRK05283 146 EALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAGG--------VRTAEDAAQYLA 215 (257)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccCC--------CCCHHHHHHHHH
Confidence 335888999999999999999999974 4333 3444444321 0122 33344211 126788889999
Q ss_pred HHHHhcCCCccc
Q 019272 112 ASLKRLDVDYID 123 (343)
Q Consensus 112 ~SL~rLg~d~iD 123 (343)
.--+.||.++++
T Consensus 216 ag~~~lg~~~~~ 227 (257)
T PRK05283 216 LADEILGADWAD 227 (257)
T ss_pred HHHHHhChhhcC
Confidence 999999988876
No 130
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=40.25 E-value=2.3e+02 Score=26.12 Aligned_cols=72 Identities=11% Similarity=0.028 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCc-ceEecCCCcHHHHHHHhcCCCeeEeccccccccc-chhhhhHHHHHHhCCeEEecccCccc
Q 019272 141 GELKKLVEEGKI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAEIVPTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 141 ~~L~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ll~~~~~~gi~v~a~~pl~~G 212 (343)
+.+..+.++-.+ -..|=|-++..++..+++....+++|+.....-. ..-.++.+.|+.+||.++..+.+..|
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~ 269 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESS 269 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchH
Confidence 455555555322 2455566778888888887777888887665432 12357999999999999988766554
No 131
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=40.06 E-value=3.2e+02 Score=25.59 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=16.0
Q ss_pred CCHHHHHHHHH-------HHHHcCCCeEeCc
Q 019272 35 KPESDMIALIH-------HAIDNGITFLDTS 58 (343)
Q Consensus 35 ~~~~~~~~~l~-------~A~~~Gin~~DTA 58 (343)
++.++..++++ .|.++|+..++--
T Consensus 142 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih 172 (338)
T cd02933 142 LTTEEIPGIVADFRQAARNAIEAGFDGVEIH 172 (338)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 46666555554 4567899999863
No 132
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=40.06 E-value=54 Score=31.79 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=70.1
Q ss_pred CchHHHHHHHhhc---CCCCCEEEEeecCcccCCCC----------CCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCC
Q 019272 64 HTNEILLGKALKG---GYRERVELATKFGIINEDGQ----------FLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRI 130 (343)
Q Consensus 64 g~sE~~lG~al~~---~~R~~~~i~tK~~~~~~~~~----------~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~ 130 (343)
|.=|+++..+-+. ..+.++++++-+|-.....+ .....+...| =+||.+.|+|.
T Consensus 148 GTyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI-------~~Rl~t~y~d~------ 214 (561)
T COG2987 148 GTYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRI-------DKRLRTGYLDE------ 214 (561)
T ss_pred chHHHHHHHHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHH-------HHHHhcchhhh------
Confidence 4566666655543 26778888888775432110 0012222322 36788899995
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcC-CCeeEe--cccc
Q 019272 131 DTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAV-HPITAV--QLEW 181 (343)
Q Consensus 131 ~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~--q~~~ 181 (343)
....++|.++..++..++|+-.+||+-..-++.+.++++. ..+|.+ |...
T Consensus 215 -~a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsa 267 (561)
T COG2987 215 -IAETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSA 267 (561)
T ss_pred -hcCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceecccccc
Confidence 3456899999999999999999999999999999998887 344444 5543
No 133
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=40.03 E-value=2.2e+02 Score=29.45 Aligned_cols=145 Identities=15% Similarity=0.098 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhc
Q 019272 38 SDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRL 117 (343)
Q Consensus 38 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rL 117 (343)
+-++++++.|-|.|++.+- .|. |+--+.-=+. .-++-|+.-|..+. ..+--....+-+..++-
T Consensus 43 EIaIRvFRa~tEL~~~tvA---iYs----eqD~~sMHRq-KADEaY~iGk~l~P---------V~AYL~ideii~iak~~ 105 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTVA---IYS----EQDRLSMHRQ-KADEAYLIGKGLPP---------VGAYLAIDEIISIAKKH 105 (1176)
T ss_pred cchhHHHHHHhhhcceEEE---EEe----ccchhhhhhh-ccccceecccCCCc---------hhhhhhHHHHHHHHHHc
Confidence 5689999999999998774 674 3322222233 56777888886322 11111122222333444
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcC---------CCeeEecccccccccch
Q 019272 118 DVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAV---------HPITAVQLEWSLWTRDA 188 (343)
Q Consensus 118 g~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~---------~~~~~~q~~~~~~~~~~ 188 (343)
+ +|. +|- ... =+.|--+.-+..++.| |++||=| ++.+..+-+. ..+.++--.-.++..
T Consensus 106 ~---vda--vHP-GYG-FLSErsdFA~av~~AG-i~fiGPs---peVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt-- 172 (1176)
T KOG0369|consen 106 N---VDA--VHP-GYG-FLSERSDFAQAVQDAG-IRFIGPS---PEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITT-- 172 (1176)
T ss_pred C---CCe--ecC-Ccc-ccccchHHHHHHHhcC-ceEeCCC---HHHHHHhhhHHHHHHHHHHcCCCccCCCCCCccc--
Confidence 4 454 331 111 0223334444555565 6899987 4444332111 111112111112221
Q ss_pred hhhhHHHHHHhCCeEEecccCccc
Q 019272 189 EAEIVPTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 189 ~~~ll~~~~~~gi~v~a~~pl~~G 212 (343)
-++.+++|+++|.+||--..+++|
T Consensus 173 ~~EA~eF~k~yG~PvI~KAAyGGG 196 (1176)
T KOG0369|consen 173 VEEALEFVKEYGLPVIIKAAYGGG 196 (1176)
T ss_pred HHHHHHHHHhcCCcEEEeecccCC
Confidence 358999999999999998888876
No 134
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=39.75 E-value=3.8e+02 Score=26.44 Aligned_cols=112 Identities=11% Similarity=0.027 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcC-CCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGG-YRERVELATKFGIINEDGQFLYRGDPAYVRAACEASL 114 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~-~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL 114 (343)
+.+-....++.|.++||..|=..++-.+-++-+..-++.++. ..-.+.|+-... +.++.++..+.+++ +
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~s---------p~~t~~y~~~~a~~-l 172 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTS---------PVHTLNYYLSLVKE-L 172 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeC---------CcCcHHHHHHHHHH-H
Confidence 456677889999999999888777665322222222334432 111122332222 23466666666655 4
Q ss_pred HhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCc
Q 019272 115 KRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEAS 161 (343)
Q Consensus 115 ~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 161 (343)
..+|. |.+.|-+........++.+.+..+++... .-||+=.|+
T Consensus 173 ~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~-~pi~~H~Hn 215 (468)
T PRK12581 173 VEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTN-LPLIVHTHA 215 (468)
T ss_pred HHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccC-CeEEEEeCC
Confidence 56784 55666555444455666666666665443 346765554
No 135
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=38.83 E-value=51 Score=29.14 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=46.0
Q ss_pred CCCcccCccccccccCCCCCCCC--CCHHHHHHHHHHHH----HcCCCeEeCcC--CCCCCchHHHHHHHhhc-------
Q 019272 12 SQGLEVSAQGLGCMGMSAFYGPP--KPESDMIALIHHAI----DNGITFLDTSD--VYGPHTNEILLGKALKG------- 76 (343)
Q Consensus 12 ~tg~~vs~lglG~~~~~~~~~~~--~~~~~~~~~l~~A~----~~Gin~~DTA~--~Yg~g~sE~~lG~al~~------- 76 (343)
.+|+.+|.+||.+-+= -.+|.. ..++++.++++.|+ +.|||.|--|. .|=.-.+|....+++..
T Consensus 65 etgv~ipSmClSaHRR-fPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRR-FPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HhCCCccchhhhhhcc-CCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 5799999999997541 123433 23556666666664 78999999884 34222344444454433
Q ss_pred CCCCCEEEEeec
Q 019272 77 GYRERVELATKF 88 (343)
Q Consensus 77 ~~R~~~~i~tK~ 88 (343)
..+..|.++.-+
T Consensus 144 A~~aqV~lAvEi 155 (287)
T COG3623 144 AARAQVMLAVEI 155 (287)
T ss_pred HHhhccEEEeee
Confidence 145666666554
No 136
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=38.62 E-value=3.2e+02 Score=25.63 Aligned_cols=61 Identities=15% Similarity=0.066 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecC-CCCC--------CCHHHHH-HHHHHHHHcCCcceEecCCCcH
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQHR-IDTK--------VPIEITI-GELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~-~~~~--------~~~~~~~-~~L~~l~~~G~ir~iGvs~~~~ 162 (343)
.-+.+.+++.++..+ +++.++|.+|.+.- |... .+.++.+ .+.+.|.+.|. ..+++|||..
T Consensus 161 gqt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 161 LDNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 346777777776644 58888888887653 2110 1122333 34555666785 5788888764
No 137
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=38.21 E-value=2.3e+02 Score=25.15 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=30.5
Q ss_pred cHHHHHHHhcCCCeeEecccccc-------cccchhhhhHHHHHHhCCeEEecccCccc
Q 019272 161 SASTIRRAHAVHPITAVQLEWSL-------WTRDAEAEIVPTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 161 ~~~~l~~~~~~~~~~~~q~~~~~-------~~~~~~~~ll~~~~~~gi~v~a~~pl~~G 212 (343)
+.++.-+.+....++.+++.... +......++.+.++++|+.+.++.|...+
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~ 72 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNG 72 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccC
Confidence 34444444444566666653210 11112356888999999999998876543
No 138
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=38.20 E-value=1.8e+02 Score=25.51 Aligned_cols=74 Identities=19% Similarity=0.140 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCC-CCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYG-PHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASL 114 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg-~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL 114 (343)
++++..++.+.+.+.|..||=|+..|+ .|.+...+-...+. -+.++-|-.-.|.. +.+...+-++.--
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~-~~~~~~IKasGGIr----------t~~~a~~~i~aGA 202 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRET-VGPRVGVKASGGIR----------TLEDALAMIEAGA 202 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH-hCCCceEEeeCCcC----------CHHHHHHHHHcCc
Confidence 678889999999999999999999985 35555555443333 23333332222221 4566666666655
Q ss_pred HhcCCC
Q 019272 115 KRLDVD 120 (343)
Q Consensus 115 ~rLg~d 120 (343)
.|+|+.
T Consensus 203 ~riGtS 208 (221)
T PRK00507 203 TRLGTS 208 (221)
T ss_pred ceEccC
Confidence 666654
No 139
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=38.06 E-value=3.3e+02 Score=25.22 Aligned_cols=102 Identities=19% Similarity=0.127 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHc-CCCeEeCcCCCCCC--chHHHHHHHh---hcC-CCCCEEEEeecCcccCCCCCCCCCCHHHHHH
Q 019272 36 PESDMIALIHHAIDN-GITFLDTSDVYGPH--TNEILLGKAL---KGG-YRERVELATKFGIINEDGQFLYRGDPAYVRA 108 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~-Gin~~DTA~~Yg~g--~sE~~lG~al---~~~-~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~ 108 (343)
+.++..++++...++ ||+-+--+. |+- .+...+.+.+ ++. ....+-|.|+.... .+..+..
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~----------~p~rit~ 187 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA----------DPARVTP 187 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCccc----------ChhhcCH
Confidence 557777888777655 887552111 110 0222333333 322 12345667765321 2233444
Q ss_pred HHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCC
Q 019272 109 ACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGK 151 (343)
Q Consensus 109 ~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ 151 (343)
.+-+.|++.|. . ..+.+|...+..-.++++++++.|++.|.
T Consensus 188 ell~~L~~~g~-~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi 228 (321)
T TIGR03822 188 ALIAALKTSGK-T-VYVALHANHARELTAEARAACARLIDAGI 228 (321)
T ss_pred HHHHHHHHcCC-c-EEEEecCCChhhcCHHHHHHHHHHHHcCC
Confidence 55556666673 2 35777875443334778899999999885
No 140
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=37.97 E-value=3.4e+02 Score=25.33 Aligned_cols=148 Identities=18% Similarity=0.121 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhc
Q 019272 38 SDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRL 117 (343)
Q Consensus 38 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rL 117 (343)
++..+.+..+.+.|++.|=.-- +.......+ +++++... ++-| ..+.. ..++.+... + +++|
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~~g-~~~l----~lDaN-----~~~~~~~a~--~---~~~l 200 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRERFP-DIPL----MADAN-----SAYTLADIP--L---LKRL 200 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHHCC-CCeE----EEECC-----CCCCHHHHH--H---HHHh
Confidence 5567777888899998873321 221223333 34443211 3322 22211 134444431 2 3444
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCcHHHHHHHhcCCCeeEeccccccccc-chhhhhHHH
Q 019272 118 DVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGK-IKYIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAEIVPT 195 (343)
Q Consensus 118 g~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ll~~ 195 (343)
+..++.++-.|-.. +-++.+.++++.-. =-+.|=|-++.+.+..+++...++++|+..+.+-- ..-.++...
T Consensus 201 --~~~~i~~iEeP~~~----~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~ 274 (354)
T cd03317 201 --DEYGLLMIEQPLAA----DDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDL 274 (354)
T ss_pred --hcCCccEEECCCCh----hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHH
Confidence 22456666655432 23666777766533 23667777899999999988888999987665432 123578999
Q ss_pred HHHhCCeEEecccC
Q 019272 196 CRELGIGIVAYSPL 209 (343)
Q Consensus 196 ~~~~gi~v~a~~pl 209 (343)
|+.+|+.++..+..
T Consensus 275 A~~~gi~~~~g~~~ 288 (354)
T cd03317 275 CQEHGIPVWCGGML 288 (354)
T ss_pred HHHcCCcEEecCcc
Confidence 99999998765544
No 141
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=37.78 E-value=2.8e+02 Score=24.21 Aligned_cols=21 Identities=10% Similarity=0.305 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCCCeEeC
Q 019272 37 ESDMIALIHHAIDNGITFLDT 57 (343)
Q Consensus 37 ~~~~~~~l~~A~~~Gin~~DT 57 (343)
.|.....++.|++.|+..|.+
T Consensus 14 pENTl~Af~~A~~~G~d~iE~ 34 (237)
T cd08583 14 YTNSLDAFEHNYKKGYRVFEV 34 (237)
T ss_pred CccHHHHHHHHHHhCCCEEEE
Confidence 366788899999999998874
No 142
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=37.60 E-value=1.6e+02 Score=25.86 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCC-cc-------------------------cEEEecCCCCCCCH---HHHHHHHHHHHHcC
Q 019272 100 RGDPAYVRAACEASLKRLDVD-YI-------------------------DLYYQHRIDTKVPI---EITIGELKKLVEEG 150 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d-~i-------------------------Dl~~lH~~~~~~~~---~~~~~~L~~l~~~G 150 (343)
+.+...+++.+++.-++|+.+ |+ +++.+..|....++ ...-+.+.+++.+|
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC
Confidence 456777888888888888852 33 33444444333333 35678889999999
Q ss_pred CcceEecCCCcHHHHHHHhcC
Q 019272 151 KIKYIGLSEASASTIRRAHAV 171 (343)
Q Consensus 151 ~ir~iGvs~~~~~~l~~~~~~ 171 (343)
+ .+=+|+|..+.++++++.
T Consensus 184 r--~viFSSH~m~EvealCDr 202 (245)
T COG4555 184 R--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred c--EEEEecccHHHHHHhhhe
Confidence 8 788999999999888775
No 143
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=36.89 E-value=2.7e+02 Score=27.33 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHcCCcce----EecCCCcHHHHHHHhcC---CCeeEecccccccccchhhhhHHHHHHhCCe
Q 019272 134 VPIEITIGELKKLVEEGKIKY----IGLSEASASTIRRAHAV---HPITAVQLEWSLWTRDAEAEIVPTCRELGIG 202 (343)
Q Consensus 134 ~~~~~~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~ 202 (343)
...++..++++.+++.|.--. +|+-+.+.+.+++.++. ..++.+ .++++.+.+...+.+.+++.|+-
T Consensus 320 ~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~--~~~~l~P~PGT~l~~~~~~~g~~ 393 (472)
T TIGR03471 320 LTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTI--QVSLAAPYPGTELYDQAKQNGWI 393 (472)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCce--eeeecccCCCcHHHHHHHHCCCc
Confidence 445678888888998886433 26666677776655443 333333 34566665667888888888763
No 144
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=36.55 E-value=1.2e+02 Score=28.66 Aligned_cols=100 Identities=9% Similarity=0.037 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecCCCC---CCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeE
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQHRIDT---KVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITA 176 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~---~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 176 (343)
.++.+. +-.+-+.|.++|+++|++-..-.|.. ..+.++.++.+.. ...++..++. .....++.+++... +.
T Consensus 64 ~~s~e~-Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g~-~~ 137 (347)
T PLN02746 64 IVPTSV-KVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAGA-KE 137 (347)
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcCc-CE
Confidence 455554 56677779999999999875444421 1123455555543 2234544554 47788888887632 22
Q ss_pred eccc---------ccccccchh------hhhHHHHHHhCCeEEec
Q 019272 177 VQLE---------WSLWTRDAE------AEIVPTCRELGIGIVAY 206 (343)
Q Consensus 177 ~q~~---------~~~~~~~~~------~~ll~~~~~~gi~v~a~ 206 (343)
+.+. .|+ ....+ .+.+++++++|+.+.++
T Consensus 138 v~i~~s~Sd~h~~~n~-~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 138 VAVFASASESFSKSNI-NCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred EEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 2221 222 11111 36889999999988543
No 145
>PHA02128 hypothetical protein
Probab=36.34 E-value=1.2e+02 Score=23.10 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhc-----------------CCC-eeEe---cccccccccchhhhhHHH
Q 019272 137 EITIGELKKLVEEGKIKYIGLSEASASTIRRAHA-----------------VHP-ITAV---QLEWSLWTRDAEAEIVPT 195 (343)
Q Consensus 137 ~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~-----------------~~~-~~~~---q~~~~~~~~~~~~~ll~~ 195 (343)
..++....++..+|-+|-|-+..-+..+++.... ..| +.+. ..+|.+-.+...++++++
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 3567777888889999998887665555444332 222 2233 335777666556789999
Q ss_pred HHHhCCeEEec
Q 019272 196 CRELGIGIVAY 206 (343)
Q Consensus 196 ~~~~gi~v~a~ 206 (343)
+--+|+.++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 99999988754
No 146
>PRK12928 lipoyl synthase; Provisional
Probab=35.68 E-value=3e+02 Score=25.17 Aligned_cols=161 Identities=12% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCC---CCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHH
Q 019272 35 KPESDMIALIHHAIDNGITFLDTSDVYG---PHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACE 111 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~ 111 (343)
.+.++..+.++.+.+.|++++--..... ....-..+.+.++......-.+..++. +++.+.+ .+
T Consensus 87 ~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~l------------tp~~~~~-~~ 153 (290)
T PRK12928 87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVL------------TPDFWGG-QR 153 (290)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEe------------ccccccC-CH
Q ss_pred HHHHhcCCCcccEEEe---------cCCCCCCCHHHHHHHHHHHHHcC---CcceE---ecCCCcHHHHHHHhcC---CC
Q 019272 112 ASLKRLDVDYIDLYYQ---------HRIDTKVPIEITIGELKKLVEEG---KIKYI---GLSEASASTIRRAHAV---HP 173 (343)
Q Consensus 112 ~SL~rLg~d~iDl~~l---------H~~~~~~~~~~~~~~L~~l~~~G---~ir~i---Gvs~~~~~~l~~~~~~---~~ 173 (343)
+.|++|.-...|++.. ....+....++.++.++.+++.| .++.- |+ +-+.+++.+.+.. ..
T Consensus 154 e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~ 232 (290)
T PRK12928 154 ERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVG 232 (290)
T ss_pred HHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcC
Q ss_pred eeEecc-cccc-----------cccchhhhhHHHHHHhCCeEEecccC
Q 019272 174 ITAVQL-EWSL-----------WTRDAEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 174 ~~~~q~-~~~~-----------~~~~~~~~ll~~~~~~gi~v~a~~pl 209 (343)
++.+.+ +|.. ..+.....+...+.+.|...++-+||
T Consensus 233 ~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 233 CDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred CCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
No 147
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.62 E-value=3.8e+02 Score=25.22 Aligned_cols=164 Identities=12% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCc---hHHHHHHHhhcCCCC------CEEEEeecCcccCCCCCCCCCCHHH
Q 019272 35 KPESDMIALIHHAIDNGITFLDTSDVYGPHT---NEILLGKALKGGYRE------RVELATKFGIINEDGQFLYRGDPAY 105 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~---sE~~lG~al~~~~R~------~~~i~tK~~~~~~~~~~~~~~s~~~ 105 (343)
.+.++..+.+..+.+.--.-++---..|.|+ +-..+-++++....+ .+.|+| +|.. +.
T Consensus 129 lt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~~i~~r~itvST-~G~~------------~~ 195 (345)
T PRK14457 129 LKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEPLLNIDEVLAAIRCLNQDLGIGQRRITVST-VGVP------------KT 195 (345)
T ss_pred cCHHHHHHHHHHHHHHhcCCCCEEEEEecCccccCHHHHHHHHHHHhcccCCccCceEEEC-CCch------------hh
Q ss_pred HHHHHHHHHHhcC-CCcccEEEecCCCC-----------CCCHHHHHHHHHH-HHHcCC---cceEecCCCc-----HHH
Q 019272 106 VRAACEASLKRLD-VDYIDLYYQHRIDT-----------KVPIEITIGELKK-LVEEGK---IKYIGLSEAS-----AST 164 (343)
Q Consensus 106 i~~~~~~SL~rLg-~d~iDl~~lH~~~~-----------~~~~~~~~~~L~~-l~~~G~---ir~iGvs~~~-----~~~ 164 (343)
+++-.+.-+++|+ .+....+-||.+++ ..+++++++++.+ +.+.|+ |+++=+.+++ ++.
T Consensus 196 i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~ 275 (345)
T PRK14457 196 IPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEE 275 (345)
T ss_pred HHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHH
Q ss_pred HHHHhcCCCeeEecccccccccc--------hhhhhHHHHHHhCCeEEecccCcc
Q 019272 165 IRRAHAVHPITAVQLEWSLWTRD--------AEAEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 165 l~~~~~~~~~~~~q~~~~~~~~~--------~~~~ll~~~~~~gi~v~a~~pl~~ 211 (343)
+.+++...+..++-++||.+... .-..+.+..+++|+.+......+.
T Consensus 276 La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 276 LANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
No 148
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=35.42 E-value=2.1e+02 Score=26.30 Aligned_cols=146 Identities=18% Similarity=0.155 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHhcCCCcccEEEecCCCCC----CCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhc-CCCeeEe
Q 019272 103 PAYVRAACEASLKRLDVDYIDLYYQHRIDTK----VPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHA-VHPITAV 177 (343)
Q Consensus 103 ~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~----~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~-~~~~~~~ 177 (343)
.+.+++.|.+-+++.|+|++=++.+-.-.+. .....++++|++..+++.-. .++..+-.... .....++
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~~g~~fv 204 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALEAGVPFV 204 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHHCCCCeE
Confidence 5677899999999999886544444433221 12335788888888876532 22333221111 1333333
Q ss_pred cccccccccchhhhhHHHHHHhCCeEEec---ccCccccCCCCCCcccCCCcchhhhccccchhhhhHHHHHHHHHHHHH
Q 019272 178 QLEWSLWTRDAEAEIVPTCRELGIGIVAY---SPLGRGFFSSGPELAENLSKDDYRQSLPRFQAENLEHNKKLFERVNEI 254 (343)
Q Consensus 178 q~~~~~~~~~~~~~ll~~~~~~gi~v~a~---~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~i 254 (343)
- +.+-.-.....+.+.++++|+.+..- ++++.++ .-=+-++.++
T Consensus 205 N--~tP~~~a~~P~l~ela~~~gvpi~GdD~KT~lAApl-------------------------------vlDLirl~~l 251 (295)
T PF07994_consen 205 N--GTPSNIADDPALVELAEEKGVPIAGDDGKTPLAAPL-------------------------------VLDLIRLAKL 251 (295)
T ss_dssp E---SSSTTTTSHHHHHHHHHHTEEEEESSBS-HHHHHH-------------------------------HHHHHHHHHH
T ss_pred e--ccCccccCCHHHHHHHHHcCCCeecchHhhhhhhHH-------------------------------HHHHHHHHHH
Confidence 2 22211111247999999999987651 2222221 1112378889
Q ss_pred HHHhCCCHHHHHHHHHHhcCCCeeeccCCCcHHHHH
Q 019272 255 AAKKGCTPSQLALAWVHHQGDDVCPIPGTTKIENLN 290 (343)
Q Consensus 255 a~~~~~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~ 290 (343)
|.+.|+.-.+-.++|.+..|.+ =.|......+.
T Consensus 252 a~r~g~~Gv~~~ls~ffK~P~~---~~g~~~~~~l~ 284 (295)
T PF07994_consen 252 ALRRGMGGVQEWLSFFFKSPMV---PPGPPQEHDLF 284 (295)
T ss_dssp HHHTTS-EEHHHHHHHBSS-T-----TTSTT--HHH
T ss_pred HHHcCCCChhHHHHHHhcCCCc---cCCCCCCCcHH
Confidence 9999998888899999999852 25666655553
No 149
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=35.32 E-value=95 Score=22.39 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 019272 242 EHNKKLFERVNEIAAKKGCTPSQLALAW 269 (343)
Q Consensus 242 ~~~~~~~~~l~~ia~~~~~s~~q~al~~ 269 (343)
.+..+.+.+|.++|++.|++.+++|.-.
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3556778899999999999999987543
No 150
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=34.96 E-value=3.8e+02 Score=24.97 Aligned_cols=152 Identities=14% Similarity=0.134 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCC--C-----chHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYGP--H-----TNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRA 108 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~--g-----~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~ 108 (343)
+.++..+.++.+++.|++.|=.--..+. + +....+ +++++.-.+++-|.-=.. ..++.+...+
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~g~~~~l~vDan---------~~~~~~~A~~ 189 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAVGYDVDLMLDCY---------MSWNLNYAIK 189 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHhCCCCcEEEECC---------CCCCHHHHHH
Confidence 4566667778888999998754321111 1 112222 333332222333322211 1345443322
Q ss_pred HHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEeccccccccc-
Q 019272 109 ACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR- 186 (343)
Q Consensus 109 ~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~- 186 (343)
+-+.|+. +++.++-.|-+. +-++.+..|+++..|. +.|=+.++...++.+++...++++|+..+..--
T Consensus 190 -~~~~l~~-----~~~~~iEeP~~~----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGi 259 (341)
T cd03327 190 -MARALEK-----YELRWIEEPLIP----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGI 259 (341)
T ss_pred -HHHHhhh-----cCCccccCCCCc----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCH
Confidence 2233333 355555555432 2366777888887666 667677889999999988888999987665432
Q ss_pred chhhhhHHHHHHhCCeEEecc
Q 019272 187 DAEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 187 ~~~~~ll~~~~~~gi~v~a~~ 207 (343)
..-.++.+.|+++|+.++.++
T Consensus 260 t~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 260 TELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHHcCCeecccc
Confidence 223589999999999988654
No 151
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=34.94 E-value=3.5e+02 Score=25.55 Aligned_cols=136 Identities=13% Similarity=0.208 Sum_probs=80.5
Q ss_pred CccccccccCCCCCCC----CCCHHHHHHHHHHHHHc---CCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCc
Q 019272 18 SAQGLGCMGMSAFYGP----PKPESDMIALIHHAIDN---GITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGI 90 (343)
Q Consensus 18 s~lglG~~~~~~~~~~----~~~~~~~~~~l~~A~~~---Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~ 90 (343)
..+|-=|.++-. ||. ..+.++..+++....+. =+-.+|..+..+.-. ..+-+.+. ...-++|.+|+-.
T Consensus 28 ~~~C~RC~~l~h-y~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~--~~l~~~~~--~~piilV~NK~DL 102 (360)
T TIGR03597 28 EVYCQRCFRLKH-YNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLI--PELKRFVG--GNPVLLVGNKIDL 102 (360)
T ss_pred Ceeecchhhhhc-cCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCcc--HHHHHHhC--CCCEEEEEEchhh
Confidence 345555655421 331 23556666666655432 234567655443211 12223332 3556789999875
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHH
Q 019272 91 INEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTI 165 (343)
Q Consensus 91 ~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l 165 (343)
... ....+.+.+-+.+-++.+|....|++.+-. -.....+++++.|.++.+.+.+-.+|.+|..-..+
T Consensus 103 l~k------~~~~~~~~~~l~~~~k~~g~~~~~i~~vSA-k~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 103 LPK------SVNLSKIKEWMKKRAKELGLKPVDIILVSA-KKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred CCC------CCCHHHHHHHHHHHHHHcCCCcCcEEEecC-CCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 421 234566666666667777765446665543 34456788999998887667899999999876554
No 152
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=34.08 E-value=4.3e+02 Score=25.32 Aligned_cols=103 Identities=14% Similarity=0.066 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCCCC--CchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 019272 38 SDMIALIHHAIDNGITFLDTSDVYGP--HTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLK 115 (343)
Q Consensus 38 ~~~~~~l~~A~~~Gin~~DTA~~Yg~--g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~ 115 (343)
++..++++.|++.|+.-|=+...|.. +.++..+-+.++...+-...|.+..-... ....+.+.+.++.+ +
T Consensus 167 ~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~-------~~e~~av~~~~~~a-~ 238 (415)
T cd01297 167 AKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG-------DSILEALDELLRLG-R 238 (415)
T ss_pred HHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc-------ccHHHHHHHHHHHH-H
Confidence 34567788889999887765555543 34666666666543333455555543210 11223333333333 2
Q ss_pred hcCCCcccEEEecCCCCC----CCHHHHHHHHHHHHHcCC
Q 019272 116 RLDVDYIDLYYQHRIDTK----VPIEITIGELKKLVEEGK 151 (343)
Q Consensus 116 rLg~d~iDl~~lH~~~~~----~~~~~~~~~L~~l~~~G~ 151 (343)
+.| .-+...|-.... ....++++.+++.+++|.
T Consensus 239 ~~g---~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~ 275 (415)
T cd01297 239 ETG---RPVHISHLKSAGAPNWGKIDRLLALIEAARAEGL 275 (415)
T ss_pred HhC---CCEEEEEEecCCCcccchHHHHHHHHHHHHHhCC
Confidence 334 235555643322 234566777777777765
No 153
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=34.03 E-value=1.8e+02 Score=28.45 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEe-cCCCCC----------C-CHHHH----HHHHHHHHHcCCcceEecCCCcH
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQ-HRIDTK----------V-PIEIT----IGELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~l-H~~~~~----------~-~~~~~----~~~L~~l~~~G~ir~iGvs~~~~ 162 (343)
..+.+.+.+.++..+ +|+.+.|.+|.+ |.|... . +.++. ..+.+.|.+.|. ..+|+++|..
T Consensus 215 gqt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~far 291 (453)
T PRK13347 215 HQTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY-VPIGLDHFAL 291 (453)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 347787877777665 689999998866 333210 1 12222 245566778887 5599999874
No 154
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=34.02 E-value=1.3e+02 Score=28.40 Aligned_cols=88 Identities=11% Similarity=0.228 Sum_probs=54.2
Q ss_pred EEEecCCCCC-----------CCHHHHHHHHHHHHH-cCC---cceEecC--CCcHHHHH---HHhcCCCeeEecccccc
Q 019272 124 LYYQHRIDTK-----------VPIEITIGELKKLVE-EGK---IKYIGLS--EASASTIR---RAHAVHPITAVQLEWSL 183 (343)
Q Consensus 124 l~~lH~~~~~-----------~~~~~~~~~L~~l~~-~G~---ir~iGvs--~~~~~~l~---~~~~~~~~~~~q~~~~~ 183 (343)
.+-||.+++. .+++++++++.++.+ .|. |+++=+. |.+.++++ +++...++.++-++||.
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 3779998642 236788888877654 443 3344332 33445544 44444556777888998
Q ss_pred cccc----hh----hhhHHHHHHhCCeEEecccCcc
Q 019272 184 WTRD----AE----AEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 184 ~~~~----~~----~~ll~~~~~~gi~v~a~~pl~~ 211 (343)
+... +. ..+.++.+++|+.+......+.
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 6531 11 2466677889999998877754
No 155
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=33.81 E-value=2.2e+02 Score=30.59 Aligned_cols=73 Identities=15% Similarity=0.061 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHHHhcCC--------------------------CcccEEEecCCCCCCCH---HHHHHHHHHHHHcC
Q 019272 100 RGDPAYVRAACEASLKRLDV--------------------------DYIDLYYQHRIDTKVPI---EITIGELKKLVEEG 150 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~--------------------------d~iDl~~lH~~~~~~~~---~~~~~~L~~l~~~G 150 (343)
+.....+.+.++.+|+.+++ ....+++|..|....+. ..+|+.+.++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 34566788889999998874 34567777777665554 47899999999999
Q ss_pred CcceEecCCCcHHHHHHHhcCCCe
Q 019272 151 KIKYIGLSEASASTIRRAHAVHPI 174 (343)
Q Consensus 151 ~ir~iGvs~~~~~~l~~~~~~~~~ 174 (343)
+ ++=+.+|+.+..+.++....+
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR~aI 770 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTRTAI 770 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhhhhe
Confidence 9 999999999999998887554
No 156
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=33.76 E-value=56 Score=20.82 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhcCC
Q 019272 251 VNEIAAKKGCTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSV 298 (343)
Q Consensus 251 l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~~~ 298 (343)
|++||+..|+|++.+.- +|+.+. -+...+.+++.+.++.+++
T Consensus 2 i~dIA~~agvS~~TVSr--~ln~~~----~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSR--VLNGPP----RVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHHH--HHTTCS----SSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHHH--HHhCCC----CCCHHHHHHHHHHHHHHCC
Confidence 67899999999987654 445442 3566677888887777665
No 157
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=33.46 E-value=3.4e+02 Score=24.59 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHhcCC-----C---------------------cccEEEecCCCCCC-C--HHHHHHHHHHHHHcC
Q 019272 100 RGDPAYVRAACEASLKRLDV-----D---------------------YIDLYYQHRIDTKV-P--IEITIGELKKLVEEG 150 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~-----d---------------------~iDl~~lH~~~~~~-~--~~~~~~~L~~l~~~G 150 (343)
......+.+.++.-|+||++ + ..||+.|.-|...- + .+-+-++..+++++|
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 44677888888888888874 2 23444444443322 2 234456788899999
Q ss_pred CcceEecCCCcHHHHHHHhcC
Q 019272 151 KIKYIGLSEASASTIRRAHAV 171 (343)
Q Consensus 151 ~ir~iGvs~~~~~~l~~~~~~ 171 (343)
. .|=+|+|..++++++++.
T Consensus 181 a--tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 181 A--TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred C--EEEEecchHHHHHHHhhh
Confidence 8 889999999999999875
No 158
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=33.42 E-value=3.8e+02 Score=24.48 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHH
Q 019272 249 ERVNEIAAKKGC------TPSQLALAWVHHQGDDVCPIPGTTKIENLNQNI 293 (343)
Q Consensus 249 ~~l~~ia~~~~~------s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl 293 (343)
.+|.++|+++|. +..++-..|.-.... ..+..|+|+++.+-+.+
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGASTPDWIIEEV 273 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCCCCHHHHHHH
Confidence 378888988874 788999999876554 56679999999775543
No 159
>PF14502 HTH_41: Helix-turn-helix domain
Probab=33.38 E-value=45 Score=21.59 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCCC--HHHHHHHHHHhcCCCe
Q 019272 249 ERVNEIAAKKGCT--PSQLALAWVHHQGDDV 277 (343)
Q Consensus 249 ~~l~~ia~~~~~s--~~q~al~~~l~~~~v~ 277 (343)
..+.++++++++| ..|-||+++-..+.|.
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 4788999999887 5899999999888754
No 160
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=33.35 E-value=2.4e+02 Score=24.12 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCCc--ccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcH--HHHHHHhcCCCeeEecccc
Q 019272 106 VRAACEASLKRLDVDY--IDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASA--STIRRAHAVHPITAVQLEW 181 (343)
Q Consensus 106 i~~~~~~SL~rLg~d~--iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~~ 181 (343)
....+.+.+++.+... +=+- +...............+..|++.|- .+.+.+++. ..+..+. ..+++.+-+..
T Consensus 101 ~~~~l~~~l~~~~~~~~~lvle-i~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~-~l~~d~iKld~ 176 (241)
T smart00052 101 LVPRVLELLEETGLPPQRLELE-ITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLK-RLPVDLLKIDK 176 (241)
T ss_pred HHHHHHHHHHHcCCCHHHEEEE-EeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHH-hCCCCeEEECH
Confidence 4566777777766542 2222 2221112233445689999999997 566666643 2333333 33456665554
Q ss_pred ccccc--------chhhhhHHHHHHhCCeEEeccc
Q 019272 182 SLWTR--------DAEAEIVPTCRELGIGIVAYSP 208 (343)
Q Consensus 182 ~~~~~--------~~~~~ll~~~~~~gi~v~a~~p 208 (343)
++... ..-..+...|+..|+.+++-+.
T Consensus 177 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV 211 (241)
T smart00052 177 SFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGV 211 (241)
T ss_pred HHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecC
Confidence 44321 1224678899999999998654
No 161
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.34 E-value=2.2e+02 Score=27.15 Aligned_cols=88 Identities=11% Similarity=0.143 Sum_probs=58.1
Q ss_pred EEEecCCCCC-----------CCHHHHHHHHHHHHHcCC----cceEecC--CCcHHHHHHH---hcCC------CeeEe
Q 019272 124 LYYQHRIDTK-----------VPIEITIGELKKLVEEGK----IKYIGLS--EASASTIRRA---HAVH------PITAV 177 (343)
Q Consensus 124 l~~lH~~~~~-----------~~~~~~~~~L~~l~~~G~----ir~iGvs--~~~~~~l~~~---~~~~------~~~~~ 177 (343)
.+.||.|+.. -+++++++++.+..++.. +-|+=+. |.+.++.+++ +... +..++
T Consensus 231 AiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 231 AISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 4789998642 357889999998865533 2222222 4455555444 4444 56888
Q ss_pred cccccccccc----h----hhhhHHHHHHhCCeEEecccCcc
Q 019272 178 QLEWSLWTRD----A----EAEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 178 q~~~~~~~~~----~----~~~ll~~~~~~gi~v~a~~pl~~ 211 (343)
-++||+.... + -..+.+.++++||.+......+.
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 9999986532 1 13677888999999999887764
No 162
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=33.20 E-value=63 Score=24.99 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCC
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYGP 63 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~ 63 (343)
+...+.++...+++.|++.||.+..|..
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 5677889999999999999999999863
No 163
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=32.98 E-value=60 Score=28.20 Aligned_cols=99 Identities=19% Similarity=0.137 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHc-CCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHH
Q 019272 36 PESDMIALIHHAIDN-GITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASL 114 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~-Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL 114 (343)
..+++..+.+...+. |+=|...++-|= +-+...+..+..+. .++++.. .+.+.+ .+.+.+
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V---s~~~a~~i~~~v~~-----~~~VgVf-------~n~~~~----~i~~i~ 71 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV---SPEQAREIASAVPK-----VKVVGVF-------VNESIE----EILEIA 71 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC---CHHHHHHHHHhCCC-----CCEEEEE-------CCCCHH----HHHHHH
Confidence 345554444443333 444555577665 44444444444222 2244443 123433 345555
Q ss_pred HhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCC
Q 019272 115 KRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEA 160 (343)
Q Consensus 115 ~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~ 160 (343)
+.++ +|++|||...+ .+.++.|.+...-..++++.++.-
T Consensus 72 ~~~~---ld~VQlHG~e~----~~~~~~l~~~~~~~v~kai~v~~~ 110 (208)
T COG0135 72 EELG---LDAVQLHGDED----PEYIDQLKEELGVPVIKAISVSEE 110 (208)
T ss_pred HhcC---CCEEEECCCCC----HHHHHHHHhhcCCceEEEEEeCCc
Confidence 6665 79999999743 223333333333457888888764
No 164
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=32.92 E-value=1.7e+02 Score=25.19 Aligned_cols=37 Identities=30% Similarity=0.449 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHhcCCCeeeccCCC--cHHHHHHHHhhc
Q 019272 260 CTPSQLALAWVHHQGDDVCPIPGTT--KIENLNQNIKAL 296 (343)
Q Consensus 260 ~s~~q~al~~~l~~~~v~~~i~g~~--~~~~l~enl~a~ 296 (343)
-|-.++||+|++.++.-...|.|+. +.+|.-.|+..+
T Consensus 72 ~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 72 TTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4667889999998876667788876 677877888765
No 165
>PLN00191 enolase
Probab=32.47 E-value=3.8e+02 Score=26.39 Aligned_cols=97 Identities=10% Similarity=0.058 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecC--CCcHHHHHHHhcCCCeeEec
Q 019272 101 GDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLS--EASASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs--~~~~~~l~~~~~~~~~~~~q 178 (343)
.+++...+-+.+.+++ .++.+|-.|-.. +-|+.+.+|.++.++.-+|=- ..++..++++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 3555555555544433 357777777543 346777778888888777622 25688899999888888888
Q ss_pred cccccccc-chhhhhHHHHHHhCCeEEec
Q 019272 179 LEWSLWTR-DAEAEIVPTCRELGIGIVAY 206 (343)
Q Consensus 179 ~~~~~~~~-~~~~~ll~~~~~~gi~v~a~ 206 (343)
+..|-+-- ..-.++.+.|+++|+.++.-
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 87775432 12357899999999998763
No 166
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=32.28 E-value=3.3e+02 Score=23.42 Aligned_cols=131 Identities=11% Similarity=0.081 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc----------CCCCCC--chHHHHHHHhhcCCCCC--EEEEeecCcccCCCCCCCCC
Q 019272 36 PESDMIALIHHAIDNGITFLDTS----------DVYGPH--TNEILLGKALKGGYRER--VELATKFGIINEDGQFLYRG 101 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA----------~~Yg~g--~sE~~lG~al~~~~R~~--~~i~tK~~~~~~~~~~~~~~ 101 (343)
+.++..+..+.+.+.|+..||-- +.||.. ..-+.+-+.++.. |+. +-|+.|+...+. .
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v-~~~~~~~v~vk~r~~~~-------~ 136 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAV-REAVPIPVTVKIRLGWD-------D 136 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHH-HHhcCCCEEEEEeeccC-------C
Confidence 56778888888889999999852 345532 1334444444432 211 456667643211 1
Q ss_pred CHHHHHHHHHHHHHhcCCCcccEEEecCCCCCC--CHHHHHHHHHHHHHcCCcceEecCCC-cHHHHHHHhcCCCeeEec
Q 019272 102 DPAYVRAACEASLKRLDVDYIDLYYQHRIDTKV--PIEITIGELKKLVEEGKIKYIGLSEA-SASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 102 s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~--~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q 178 (343)
. +... .+-+.|+..|+ |.+.+|...... .....|+.+..+++.-.+.-++..+. +.+++.+++.....+.++
T Consensus 137 ~-~~~~-~~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 137 E-EETL-ELAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred c-hHHH-HHHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 1 1222 23334556674 556677653211 00123555556666555555555443 456666665554455554
Q ss_pred c
Q 019272 179 L 179 (343)
Q Consensus 179 ~ 179 (343)
+
T Consensus 212 i 212 (231)
T cd02801 212 I 212 (231)
T ss_pred E
Confidence 4
No 167
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=32.03 E-value=6.3e+02 Score=26.63 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=80.7
Q ss_pred CCHHHHHHHHH-------HHHHcCCCeEeC--c----------C-------CCCCCchH---HH---HHHHhhcCCCCCE
Q 019272 35 KPESDMIALIH-------HAIDNGITFLDT--S----------D-------VYGPHTNE---IL---LGKALKGGYRERV 82 (343)
Q Consensus 35 ~~~~~~~~~l~-------~A~~~Gin~~DT--A----------~-------~Yg~g~sE---~~---lG~al~~~~R~~~ 82 (343)
++.++..++++ .|.++|+..||- | + .||. .=| ++ +=+++++.-.+++
T Consensus 541 mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~~~~~~ 619 (765)
T PRK08255 541 MTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGG-SLENRLRYPLEVFRAVRAVWPAEK 619 (765)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCC-CHHHHhHHHHHHHHHHHHhcCCCC
Confidence 46666555544 556789999985 2 1 2442 212 11 2233333234578
Q ss_pred EEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCC----CHHH--HHHHHHHHHHcCCcceEe
Q 019272 83 ELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKV----PIEI--TIGELKKLVEEGKIKYIG 156 (343)
Q Consensus 83 ~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~----~~~~--~~~~L~~l~~~G~ir~iG 156 (343)
.|..|+...... ....+.+... .+-+-|+..|+|+|| +|...... .... ......++++.=+|--++
T Consensus 620 ~v~~ri~~~~~~---~~g~~~~~~~-~~~~~l~~~g~d~i~---vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~ 692 (765)
T PRK08255 620 PMSVRISAHDWV---EGGNTPDDAV-EIARAFKAAGADLID---VSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIA 692 (765)
T ss_pred eeEEEEcccccc---CCCCCHHHHH-HHHHHHHhcCCcEEE---eCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEE
Confidence 899998853211 0123444433 444557778866665 45321110 0000 112234455544566667
Q ss_pred cCCC-cHHHHHHHhcCCCeeEecc-cccccccchhhhhHHHHHHhCCe
Q 019272 157 LSEA-SASTIRRAHAVHPITAVQL-EWSLWTRDAEAEIVPTCRELGIG 202 (343)
Q Consensus 157 vs~~-~~~~l~~~~~~~~~~~~q~-~~~~~~~~~~~~ll~~~~~~gi~ 202 (343)
+.+. +++.++++++....|.+.+ +.-+.++. =....+.+.++.
T Consensus 693 ~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~---~~~~~~~~~~~~ 737 (765)
T PRK08255 693 VGAISEADHVNSIIAAGRADLCALARPHLADPA---WTLHEAAEIGYR 737 (765)
T ss_pred eCCCCCHHHHHHHHHcCCcceeeEcHHHHhCcc---HHHHHHHHcCCC
Confidence 6664 6778888888877776654 22222221 244456666665
No 168
>PRK00208 thiG thiazole synthase; Reviewed
Probab=31.96 E-value=3.8e+02 Score=24.03 Aligned_cols=105 Identities=12% Similarity=0.013 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCC-CHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEec
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKV-PIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~-~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 178 (343)
..+.+...+-.+-..+-++++.|=|=.+.++.... +..+++++.++|.++|.+-. =+|+-++...+++.+.. +++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vl-pyc~~d~~~ak~l~~~G-~~~vm 149 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEEAG-CAAVM 149 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHcC-CCEeC
Confidence 55788888888888899999999888887766543 57899999999999998543 35666777666666652 23442
Q ss_pred ccccccccc--h-hhhhHHHHHH-hCCeEEec
Q 019272 179 LEWSLWTRD--A-EAEIVPTCRE-LGIGIVAY 206 (343)
Q Consensus 179 ~~~~~~~~~--~-~~~ll~~~~~-~gi~v~a~ 206 (343)
.--+++-.. . ..+++....+ .++.|++-
T Consensus 150 Plg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 150 PLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 211222111 0 1345665555 47777764
No 169
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=31.91 E-value=91 Score=26.23 Aligned_cols=49 Identities=18% Similarity=0.309 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecC
Q 019272 107 RAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLS 158 (343)
Q Consensus 107 ~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs 158 (343)
+.+++++|..-. -+|++++........++-++.|..+..+|++|++-+.
T Consensus 66 e~~f~~~L~e~s---n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG 114 (173)
T PF10171_consen 66 EQSFEDALLEAS---NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLG 114 (173)
T ss_pred HHHHHHHHHHHh---CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeee
Confidence 355566665544 5788888666555567889999999999999987544
No 170
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=31.82 E-value=44 Score=29.81 Aligned_cols=98 Identities=16% Similarity=0.140 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHc-CCcceEecC-------CCcHHHHHHHhcCCCeeEec
Q 019272 107 RAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEE-GKIKYIGLS-------EASASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 107 ~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvs-------~~~~~~l~~~~~~~~~~~~q 178 (343)
...++..|+-.| +|||++=+-|-......+++++...++.++ |.--+.|=. ....+..-+.++...|+++.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 467788888888 999999999976655555566555555444 333333321 11223333344446677777
Q ss_pred ccccccccchh--hhhHHHHHHhCCeEEe
Q 019272 179 LEWSLWTRDAE--AEIVPTCRELGIGIVA 205 (343)
Q Consensus 179 ~~~~~~~~~~~--~~ll~~~~~~gi~v~a 205 (343)
+.-..+....+ .+++..+++.|..|++
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 65444433222 3677778888877765
No 171
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=31.82 E-value=5.2e+02 Score=25.60 Aligned_cols=103 Identities=11% Similarity=0.073 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC-CcceEecCC----C--cHHHHHHHhcCCC
Q 019272 101 GDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEG-KIKYIGLSE----A--SASTIRRAHAVHP 173 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~----~--~~~~l~~~~~~~~ 173 (343)
.+++.|.+.++...++.|+.++ .+.+.+...+.+.+.+.++++++.| .-..++++. . +.+.++.+.+. .
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~a-G 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRA-G 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHh-C
Confidence 4789999999998888886543 4444443444556677788888887 323344432 1 33444444332 2
Q ss_pred eeEeccccc--------ccccc----hhhhhHHHHHHhCCeEEecc
Q 019272 174 ITAVQLEWS--------LWTRD----AEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 174 ~~~~q~~~~--------~~~~~----~~~~ll~~~~~~gi~v~a~~ 207 (343)
+..+++-.- .+... ...+.+..|+++||.+.+.-
T Consensus 298 ~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~ 343 (497)
T TIGR02026 298 LVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQF 343 (497)
T ss_pred CcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEE
Confidence 222222111 11111 11367889999999876533
No 172
>TIGR00035 asp_race aspartate racemase.
Probab=31.71 E-value=2.6e+02 Score=24.37 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHhcCCCcccEEEecCCCCC------------CCHHHHHHHHHHHHHcCCcceEecCCCcHHH-HHHH
Q 019272 102 DPAYVRAACEASLKRLDVDYIDLYYQHRIDTK------------VPIEITIGELKKLVEEGKIKYIGLSEASAST-IRRA 168 (343)
Q Consensus 102 s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~------------~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~-l~~~ 168 (343)
+.+..++-++.+-.+.+-++++++.+++|+-. .....+.+.++.|.+.| +.+|-++...... ++++
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~~~~l 93 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKFAEDI 93 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHHHHHH
Confidence 45677777777777888899999999998531 12234566777776655 7888887766554 3344
Q ss_pred hc
Q 019272 169 HA 170 (343)
Q Consensus 169 ~~ 170 (343)
.+
T Consensus 94 ~~ 95 (229)
T TIGR00035 94 QK 95 (229)
T ss_pred HH
Confidence 33
No 173
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=31.21 E-value=3.8e+02 Score=23.82 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=0.0
Q ss_pred cCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCcHHHHH
Q 019272 88 FGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGK-IKYIGLSEASASTIR 166 (343)
Q Consensus 88 ~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~ 166 (343)
+.+..+.......++.+...+-++. |.++|+++|++- ....-+.-++.++.+.+.++ ++..+++....+.++
T Consensus 4 ~TlRDG~Q~~~~~~~~~~k~~i~~~-L~~~Gv~~iE~g------~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~ 76 (259)
T cd07939 4 TTLRDGEQAPGVAFSREEKLAIARA-LDEAGVDEIEVG------IPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIE 76 (259)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH-HHHcCCCEEEEe------cCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHH
Q ss_pred HHhcCCCeeEeccccccccc--------------chhhhhHHHHHHhCCeEEecccCcc
Q 019272 167 RAHAVHPITAVQLEWSLWTR--------------DAEAEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 167 ~~~~~~~~~~~q~~~~~~~~--------------~~~~~ll~~~~~~gi~v~a~~pl~~ 211 (343)
.+.+. .++.+.+..+.-+. ..-.+.+.+|+++|+.+....+...
T Consensus 77 ~a~~~-g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~ 134 (259)
T cd07939 77 AALRC-GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDAS 134 (259)
T ss_pred HHHhC-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCC
No 174
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=31.15 E-value=1.3e+02 Score=26.74 Aligned_cols=97 Identities=14% Similarity=0.112 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHH-HHcCCcceEecCCC-cH----HHHH---HHhcCCCeeEe
Q 019272 107 RAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKL-VEEGKIKYIGLSEA-SA----STIR---RAHAVHPITAV 177 (343)
Q Consensus 107 ~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l-~~~G~ir~iGvs~~-~~----~~l~---~~~~~~~~~~~ 177 (343)
.+.++..|+-+| +|||.+=+-|-......++.++..-++ ++-|.--+.| .++ .. ..++ +.++...|+++
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~I 88 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAV 88 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEE
Confidence 367788888899 999999999976665555666665554 4456655556 211 11 1122 22333567777
Q ss_pred cccccccccchh--hhhHHHHHHhCCeEEe
Q 019272 178 QLEWSLWTRDAE--AEIVPTCRELGIGIVA 205 (343)
Q Consensus 178 q~~~~~~~~~~~--~~ll~~~~~~gi~v~a 205 (343)
.+.-..+.-..+ .++++.++++|..+..
T Consensus 89 EiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 89 EISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 765444443222 3688888888877764
No 175
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=31.12 E-value=2.4e+02 Score=27.24 Aligned_cols=102 Identities=21% Similarity=0.309 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCCeEeCcCCCCC-CchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 019272 42 ALIHHAIDNGITFLDTSDVYGP-HTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVD 120 (343)
Q Consensus 42 ~~l~~A~~~Gin~~DTA~~Yg~-g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d 120 (343)
.++.++++.| .+-..-.||. |.--+.+++.+.....-.+.-.+-+ ..+-+.+++.+++..++++..
T Consensus 37 ~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv-----------~~gvkdlr~i~e~a~~~~~~g 103 (436)
T COG2256 37 KPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV-----------TSGVKDLREIIEEARKNRLLG 103 (436)
T ss_pred chHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-----------cccHHHHHHHHHHHHHHHhcC
Confidence 4678888877 2333346774 6677888888876433333322222 224678999999998888755
Q ss_pred cccEEEe---cCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCc
Q 019272 121 YIDLYYQ---HRIDTKVPIEITIGELKKLVEEGKIKYIGLSEAS 161 (343)
Q Consensus 121 ~iDl~~l---H~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 161 (343)
+=-+++| |+.+. .--++|.-.++.|.|-.||.++-+
T Consensus 104 r~tiLflDEIHRfnK-----~QQD~lLp~vE~G~iilIGATTEN 142 (436)
T COG2256 104 RRTILFLDEIHRFNK-----AQQDALLPHVENGTIILIGATTEN 142 (436)
T ss_pred CceEEEEehhhhcCh-----hhhhhhhhhhcCCeEEEEeccCCC
Confidence 4455555 55543 346778888999999999998743
No 176
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=31.12 E-value=4.3e+02 Score=24.46 Aligned_cols=109 Identities=17% Similarity=0.083 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHhcCCCcccEEEecCCCCCC-CHHHHHHHHHHHHHcCCcceEecCC---------CcHHHHHHHhcC
Q 019272 102 DPAYVRAACEASLKRLDVDYIDLYYQHRIDTKV-PIEITIGELKKLVEEGKIKYIGLSE---------ASASTIRRAHAV 171 (343)
Q Consensus 102 s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~-~~~~~~~~L~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~ 171 (343)
+.+.+.+.++..-+..+ |.-+.+-.-|+.. +...+.+.++.+++.|.++.+.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~---I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPE---IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCC---ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 34445544443322323 3445555555543 2356777788888888776444433 234445555444
Q ss_pred CCeeEeccccccccc--chhhhhHHHHHHhCCeEEecccCcccc
Q 019272 172 HPITAVQLEWSLWTR--DAEAEIVPTCRELGIGIVAYSPLGRGF 213 (343)
Q Consensus 172 ~~~~~~q~~~~~~~~--~~~~~ll~~~~~~gi~v~a~~pl~~G~ 213 (343)
.....+.++.|-... ..-.+-+..+++.||.+...+++..|.
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 322233333331110 111357778889999999999998874
No 177
>PRK15108 biotin synthase; Provisional
Probab=30.96 E-value=4.5e+02 Score=24.64 Aligned_cols=137 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchH--HHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHH
Q 019272 35 KPESDMIALIHHAIDNGITFLDTSDVYGPHTNE--ILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEA 112 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE--~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~ 112 (343)
.+.++..+..+.+.+.|++-|-.....-+-... +.+-+.++......+.++.-.|.. .+..-+
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~l---------------s~e~l~ 140 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGTL---------------SESQAQ 140 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCcC---------------CHHHHH
Q ss_pred HHHhcCCCcccE------EEecCCCCCCCHHHHHHHHHHHHHcCCcce----EecCCCcHHHHHHHhcCCCe--eEeccc
Q 019272 113 SLKRLDVDYIDL------YYQHRIDTKVPIEITIGELKKLVEEGKIKY----IGLSEASASTIRRAHAVHPI--TAVQLE 180 (343)
Q Consensus 113 SL~rLg~d~iDl------~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~~~~~~~~--~~~q~~ 180 (343)
-|+..|+|++.+ =.....-....+++.++.++.+++.|.--. +|+.....+.++-+...... .+..++
T Consensus 141 ~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip 220 (345)
T PRK15108 141 RLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVP 220 (345)
T ss_pred HHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEE
Q ss_pred cccccc
Q 019272 181 WSLWTR 186 (343)
Q Consensus 181 ~~~~~~ 186 (343)
++.+.+
T Consensus 221 ~~~~~P 226 (345)
T PRK15108 221 INMLVK 226 (345)
T ss_pred eCCccC
No 178
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=30.74 E-value=3.2e+02 Score=25.85 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEec
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQH 128 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH 128 (343)
.-+.+.+.+.++..+ +|+.+++.+|.+.
T Consensus 171 gqt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 171 GESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 446777777777544 5899999988876
No 179
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.65 E-value=1.9e+02 Score=21.99 Aligned_cols=79 Identities=24% Similarity=0.269 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCC----------CCCCCCHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQ----------FLYRGDPAY 105 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~----------~~~~~s~~~ 105 (343)
|..-.....--.+++|.-|+-|-..|.-| .|.++---|-+ ..+++.+++|+.+....+. +..+-.-..
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG-~evfl~l~lld-~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~ 95 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIG-EEVFLLLELLD-FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLK 95 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccc-hhhhhhhhhcC-chhhccccceEEEEccCCCCCCCCceeeeccCCCchhh
Confidence 33434444455579999999999999654 35555444433 4678999999976533210 001112346
Q ss_pred HHHHHHHHHHh
Q 019272 106 VRAACEASLKR 116 (343)
Q Consensus 106 i~~~~~~SL~r 116 (343)
++++||.-|..
T Consensus 96 vr~~IE~~Lg~ 106 (117)
T COG3215 96 VRNQIETLLGG 106 (117)
T ss_pred HHHHHHHHHHh
Confidence 78888887743
No 180
>PRK13753 dihydropteroate synthase; Provisional
Probab=30.64 E-value=4.2e+02 Score=24.17 Aligned_cols=102 Identities=18% Similarity=0.133 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEEe-cCCCCC-CCH----HHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCe
Q 019272 101 GDPAYVRAACEASLKRLDVDYIDLYYQ-HRIDTK-VPI----EITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPI 174 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rLg~d~iDl~~l-H~~~~~-~~~----~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 174 (343)
.+.+.+.+..++.+ .-|.|-||+=-- .+|... .+. +-+...++.+++.+. .|.|-++.++.++++++..-
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGa- 97 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGV- 97 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCC-
Confidence 45666666666654 457777776442 234432 222 224467778877753 48999999999999998642
Q ss_pred eEecccccccccchhhhhHHHHHHhCCeEEecccCc
Q 019272 175 TAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPLG 210 (343)
Q Consensus 175 ~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~ 210 (343)
+.+ +..+-+. ...+++.+.+.+++++.+...+
T Consensus 98 diI-NDVsg~~---d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 98 GYL-NDIQGFP---DPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred CEE-EeCCCCC---chHHHHHHHHcCCCEEEEecCC
Confidence 322 2222221 3578888999999988866543
No 181
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=30.61 E-value=5.2e+02 Score=25.25 Aligned_cols=109 Identities=14% Similarity=0.046 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCcccEEEecCCC-CCCCHHHHHHHHHHHHHc--CCcceEecCCCc---HHHHHHHhcCC
Q 019272 99 YRGDPAYVRAACEASLKRLDVDYIDLYYQHRID-TKVPIEITIGELKKLVEE--GKIKYIGLSEAS---ASTIRRAHAVH 172 (343)
Q Consensus 99 ~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~-~~~~~~~~~~~L~~l~~~--G~ir~iGvs~~~---~~~l~~~~~~~ 172 (343)
...+++.+.+.+++..+.++ .++.+-+-.+. +....+.+++.+..++++ |. .+.+++.. ++.++++.+..
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i--~i~lsTNG~~l~e~i~~L~~~g 133 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDV--KLCLSTNGLMLPEHVDRLVDLG 133 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCC--eEEEECCCCCCHHHHHHHHHCC
Confidence 35788999999988877662 35666666643 334446688999999988 44 56666533 57777776642
Q ss_pred CeeEecccccccccchh---------------------------hhhHHHHHHhCCeEEecccCccc
Q 019272 173 PITAVQLEWSLWTRDAE---------------------------AEIVPTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 173 ~~~~~q~~~~~~~~~~~---------------------------~~ll~~~~~~gi~v~a~~pl~~G 212 (343)
++.+.+..+-.++... .+-+..+.+.|+.+....++-.|
T Consensus 134 -vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 134 -VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred -CCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 3455555444332111 12345567788887777776554
No 182
>PLN02540 methylenetetrahydrofolate reductase
Probab=29.97 E-value=6e+02 Score=25.78 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHh--hcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHH
Q 019272 37 ESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKAL--KGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASL 114 (343)
Q Consensus 37 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al--~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL 114 (343)
.+...+.+++....|-.|||.+..=|...++..+.-+- ++...=+.+.---+ .+.+...+...++..
T Consensus 14 ~~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTC----------rd~n~~~L~~~L~~a- 82 (565)
T PLN02540 14 VDNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTC----------TNMPVEKIDHALETI- 82 (565)
T ss_pred HHHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeee----------cCCCHHHHHHHHHHH-
Confidence 34455566666788999999886655545666655443 22111121111111 134556666655554
Q ss_pred HhcCCCcccEEEecCCCCC---------CCHHHHHHHHHHHHHc-CCcceEecCCCcH------------------HHHH
Q 019272 115 KRLDVDYIDLYYQHRIDTK---------VPIEITIGELKKLVEE-GKIKYIGLSEASA------------------STIR 166 (343)
Q Consensus 115 ~rLg~d~iDl~~lH~~~~~---------~~~~~~~~~L~~l~~~-G~ir~iGvs~~~~------------------~~l~ 166 (343)
+.+|+.. ++.|-...+. ..+..+.+-++.+++. |....|||+.++. ..+.
T Consensus 83 ~~~GIrN--ILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~ 160 (565)
T PLN02540 83 KSNGIQN--ILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLA 160 (565)
T ss_pred HHCCCCE--EEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHH
Confidence 7788653 4444432211 1223345555555554 5567888886532 1333
Q ss_pred HHhcC----CCeeEecccccccccchhhhhHHHHHHhC--CeEEe
Q 019272 167 RAHAV----HPITAVQLEWSLWTRDAEAEIVPTCRELG--IGIVA 205 (343)
Q Consensus 167 ~~~~~----~~~~~~q~~~~~~~~~~~~~ll~~~~~~g--i~v~a 205 (343)
.+.+. ..+-+-|.-|.. ..-.++++.|++.| +.|++
T Consensus 161 ~Lk~KvdAGAdFiITQlfFD~---d~f~~f~~~~r~~Gi~vPIip 202 (565)
T PLN02540 161 YLKEKVDAGADLIITQLFYDT---DIFLKFVNDCRQIGITCPIVP 202 (565)
T ss_pred HHHHHHHcCCCEEeeccccCH---HHHHHHHHHHHhcCCCCCEEe
Confidence 33222 345555665554 22357889999998 44444
No 183
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=29.95 E-value=3.8e+02 Score=23.43 Aligned_cols=135 Identities=12% Similarity=0.067 Sum_probs=73.0
Q ss_pred HHHHHHcCCCeEeC-cCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcc
Q 019272 44 IHHAIDNGITFLDT-SDVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYI 122 (343)
Q Consensus 44 l~~A~~~Gin~~DT-A~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~i 122 (343)
++...+. +|.+.. +..|+. -+++.+.++.++ ..+++..+-|+.....-. .......+.+.+.+-+.++-|| +.+
T Consensus 12 L~~Ya~~-F~~VEvn~TFY~~-P~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~-~~l~~~~~~~~~~F~~~~~~L~-~kl 86 (230)
T PF01904_consen 12 LAYYARH-FNTVEVNSTFYRI-PSPETVARWREQ-TPEGFRFSVKAPQLITHE-RRLRDCAEELWRRFLEALEPLG-EKL 86 (230)
T ss_dssp HHHHCCT--SEEEE-HHCCSS-S-HHHHHHHHCT-S-TT-EEEEE--CCCCCC-CHCGSSHHHHHHHHHHHCHHHH-T-E
T ss_pred HHHHHHh-CCeEEECcccCCC-CCHHHHHHHHhh-CCCCeEEEEeccHHheec-ccccccHHHHHHHHHHHHHHHh-hcc
Confidence 4444444 555554 446764 267788888887 578999999997543200 0011235666577777999999 999
Q ss_pred cEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEecccccccccchhhhhHHHHHHhCCe
Q 019272 123 DLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWTRDAEAEIVPTCRELGIG 202 (343)
Q Consensus 123 Dl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~ 202 (343)
..+++.-|.....-.+.++.|..+.+.=. .....++.++-.-+. ..++++.++++|+.
T Consensus 87 g~iL~Q~Ppsf~~~~~~~~~l~~~l~~~~-------------------~~~~~avE~R~~sW~---~~~~~~~l~~~~~~ 144 (230)
T PF01904_consen 87 GPILFQFPPSFRFTPENLERLDAFLDRLP-------------------RGFRYAVEFRHPSWF---TEEVFELLREHGVA 144 (230)
T ss_dssp EEEEEE--TT--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGG---CHHHHHHHHHTT-E
T ss_pred eEEEEEcCCCcCCCHHHHHHHHHHHhhcc-------------------cccceEEecCCcchh---hHHHHHHHHHcCCE
Confidence 99999998764444566666666655422 011223444322222 25789999999987
Q ss_pred EEe
Q 019272 203 IVA 205 (343)
Q Consensus 203 v~a 205 (343)
.+.
T Consensus 145 ~v~ 147 (230)
T PF01904_consen 145 LVI 147 (230)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 184
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=29.81 E-value=1.3e+02 Score=17.86 Aligned_cols=21 Identities=38% Similarity=0.670 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHH
Q 019272 246 KLFERVNEIAAKKGCTPSQLA 266 (343)
Q Consensus 246 ~~~~~l~~ia~~~~~s~~q~a 266 (343)
+..+.+.++|++.|+|.+++.
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHH
Confidence 456789999999999998854
No 185
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=29.66 E-value=3e+02 Score=25.39 Aligned_cols=107 Identities=14% Similarity=0.082 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhc
Q 019272 38 SDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRL 117 (343)
Q Consensus 38 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rL 117 (343)
+.-+++|+..-+.|+ .+|+|.. |++..-++++-. ...+|+|-.....--. ...+.+.+.+ +++ -++=
T Consensus 154 ~~G~~vv~~mn~lGm-iiDvSH~-----s~~~~~dv~~~s--~~PviaSHsn~ral~~-h~RNltD~~i-~~i---a~~G 220 (309)
T cd01301 154 PFGKELVREMNRLGI-IIDLSHL-----SERTFWDVLDIS--NAPVIASHSNARALCD-HPRNLTDAQL-KAI---AETG 220 (309)
T ss_pred HHHHHHHHHHHHcCC-EEEcCCC-----CHHHHHHHHHhc--CCCEEEeccChHHhcC-CCCCCCHHHH-HHH---HHcC
Confidence 457899999999999 9999987 788888888753 3447777765432111 0112333322 222 2222
Q ss_pred CCCcccEEEecCC---CCCCCHHHHHHHHHHHHHcCCcceEecCC
Q 019272 118 DVDYIDLYYQHRI---DTKVPIEITIGELKKLVEEGKIKYIGLSE 159 (343)
Q Consensus 118 g~d~iDl~~lH~~---~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 159 (343)
| .|-+.+.-.. +....+++.++.++.+.+.+=+.++|+.+
T Consensus 221 G--vigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGs 263 (309)
T cd01301 221 G--VIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGS 263 (309)
T ss_pred C--EEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECc
Confidence 2 2333222111 23456888999999998887799999976
No 186
>PRK00077 eno enolase; Provisional
Probab=29.66 E-value=4.6e+02 Score=25.43 Aligned_cols=96 Identities=7% Similarity=0.034 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC--CcceEecCC--CcHHHHHHHhcCCCeeE
Q 019272 101 GDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEG--KIKYIGLSE--ASASTIRRAHAVHPITA 176 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvs~--~~~~~l~~~~~~~~~~~ 176 (343)
.+++...+.+.+.++++ ++++|-.|-+.. -|+.+.+|.++- .|.-.|=-. .++..++++++....++
T Consensus 261 ~s~~e~~~~~~~l~e~y-----~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDKY-----PIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhhC-----CcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 46666666666665553 577777776543 356666666653 455444332 36899999998888888
Q ss_pred eccccccccc-chhhhhHHHHHHhCCeEEe
Q 019272 177 VQLEWSLWTR-DAEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 177 ~q~~~~~~~~-~~~~~ll~~~~~~gi~v~a 205 (343)
+|+..+-+-- ..-.++...|+++|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 9887775432 1235789999999998664
No 187
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.59 E-value=4.1e+02 Score=23.71 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=26.8
Q ss_pred cEEEecCCCC--------------CCCHHHHHHHHHHHHHcCCcceEecCCCcHH
Q 019272 123 DLYYQHRIDT--------------KVPIEITIGELKKLVEEGKIKYIGLSEASAS 163 (343)
Q Consensus 123 Dl~~lH~~~~--------------~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~ 163 (343)
+-++||-|-. ....+++.+.++..+.. .--++|+.||-..
T Consensus 78 ~evlih~PmeP~~~~~~e~gtL~~~~s~~e~~~rl~~a~~~-v~~~~GlnNhmGs 131 (250)
T COG2861 78 HEVLIHMPMEPFSYPKIEPGTLRPGMSAEEILRRLRKAMNK-VPDAVGLNNHMGS 131 (250)
T ss_pred CEEEEeccCCcccCCCCCCCCcccCCCHHHHHHHHHHHHhh-Cccceeehhhhhh
Confidence 5567887721 22346788888887765 4567899997543
No 188
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=29.21 E-value=3.1e+02 Score=26.92 Aligned_cols=102 Identities=12% Similarity=0.088 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCC----CHHHHHHHHHHHHHcC-Ccc---------eEecCCCcHHHH
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKV----PIEITIGELKKLVEEG-KIK---------YIGLSEASASTI 165 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~----~~~~~~~~L~~l~~~G-~ir---------~iGvs~~~~~~l 165 (343)
.++.+... .+-+.|.++|++.|.+. +....+. -.++-|+.++.+++.. .++ .+|.++++-+.+
T Consensus 22 ~~~t~dkl-~ia~~Ld~~Gv~~IE~~--ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv 98 (448)
T PRK12331 22 RMTTEEML-PILEKLDNAGYHSLEMW--GGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVV 98 (448)
T ss_pred ccCHHHHH-HHHHHHHHcCCCEEEec--CCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhH
Confidence 45555544 45556899999999983 1110000 0123577777776652 233 256666654443
Q ss_pred ----HHHhcCCCeeEecccccccccchhhhhHHHHHHhCCeEEe
Q 019272 166 ----RRAHAVHPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 166 ----~~~~~~~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a 205 (343)
+++.+ ..++.+.+-.++-+...-.+.+++++++|..+.+
T Consensus 99 ~~~v~~A~~-~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 99 ESFVQKSVE-NGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHHHH-CCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 33333 3455565554443332235688999999976654
No 189
>PRK06740 histidinol-phosphatase; Validated
Probab=29.11 E-value=4.8e+02 Score=24.34 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHcCCCeEeCcCC
Q 019272 37 ESDMIALIHHAIDNGITFLDTSDV 60 (343)
Q Consensus 37 ~~~~~~~l~~A~~~Gin~~DTA~~ 60 (343)
.....+.|++|++.|+..|=-++|
T Consensus 60 ~~~~e~yv~~Ai~~G~~~ig~SdH 83 (331)
T PRK06740 60 TKWIDLYLEEALRKGIKEVGIVDH 83 (331)
T ss_pred cchHHHHHHHHHHCCCcEEEECCC
Confidence 345789999999999998876665
No 190
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=29.07 E-value=1.8e+02 Score=24.91 Aligned_cols=73 Identities=16% Similarity=0.057 Sum_probs=46.8
Q ss_pred hhHHHHHHhCCeEEe-cccCccccCCCCCCcccCCCcchhhhccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 019272 191 EIVPTCRELGIGIVA-YSPLGRGFFSSGPELAENLSKDDYRQSLPRFQAENLEHNKKLFERVNEIAAKKGCTPSQLALAW 269 (343)
Q Consensus 191 ~ll~~~~~~gi~v~a-~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~ 269 (343)
+--+..+++||.++. +..-+||...+........ +....+.++.....+..+-+.++++++++.+.|+.-
T Consensus 123 ~~~~~L~~~Gi~~~Pd~~~NaGGv~~~~~e~~~~~---------~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~aA~~~ 193 (200)
T cd01075 123 RHGQMLHERGILYAPDYVVNAGGLINVADELYGGN---------EARVLAKVEAIYDTLLEIFAQAKQDGITTLEAADRM 193 (200)
T ss_pred hHHHHHHHCCCEEeCceeeeCcCceeehhHHhCCc---------HHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455567899999988 7777888765211111100 100112234456667778888999999999999887
Q ss_pred HHh
Q 019272 270 VHH 272 (343)
Q Consensus 270 ~l~ 272 (343)
++.
T Consensus 194 a~~ 196 (200)
T cd01075 194 AEE 196 (200)
T ss_pred HHH
Confidence 765
No 191
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=28.75 E-value=2.6e+02 Score=24.04 Aligned_cols=94 Identities=10% Similarity=0.018 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEeccccc-cccc
Q 019272 108 AACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWS-LWTR 186 (343)
Q Consensus 108 ~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~-~~~~ 186 (343)
+++-+.|.. .-..+..+.+.. .-+...+|.+.|- ..+-..-.+.+.|.++++.....++-+... ....
T Consensus 12 ~~v~~~L~~---~~~~V~~l~R~~-------~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~ 80 (233)
T PF05368_consen 12 RSVVRALLS---AGFSVRALVRDP-------SSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL 80 (233)
T ss_dssp HHHHHHHHH---TTGCEEEEESSS-------HHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred HHHHHHHHh---CCCCcEEEEecc-------chhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence 344444444 335777777654 2233455666776 355666667888888888655444433322 2112
Q ss_pred chhhhhHHHHHHhCCeEEecccCccc
Q 019272 187 DAEAEIVPTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 187 ~~~~~ll~~~~~~gi~v~a~~pl~~G 212 (343)
.....+++.|++.||..+.++.++..
T Consensus 81 ~~~~~li~Aa~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 81 EQQKNLIDAAKAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHHHHHHHHHHHT-SEEEESEESSG
T ss_pred hhhhhHHHhhhccccceEEEEEeccc
Confidence 23467999999999999999988765
No 192
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=28.41 E-value=3.2e+02 Score=25.80 Aligned_cols=61 Identities=10% Similarity=-0.037 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEec-CCCCC------------CCHH---H-HHHHHHHHHHcCCcceEecCCCcH
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQH-RIDTK------------VPIE---I-TIGELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH-~~~~~------------~~~~---~-~~~~L~~l~~~G~ir~iGvs~~~~ 162 (343)
.-+.+.+.+.++. +.+|+.+++.+|.+. .|... .+.+ + .-.+++.|.+.|. ..+++++|..
T Consensus 163 gqt~~~~~~~l~~-~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~~~~~~fa~ 240 (377)
T PRK08599 163 GQTIEDFKESLAK-ALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF-HQYEISNFAK 240 (377)
T ss_pred CCCHHHHHHHHHH-HHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-cEeeeeeeeC
Confidence 3467777777766 466899988887653 22110 0111 1 2235666677775 4678888763
No 193
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=28.34 E-value=4.3e+02 Score=23.60 Aligned_cols=120 Identities=14% Similarity=0.102 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCC----chH--HHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHH
Q 019272 35 KPESDMIALIHHAIDNGITFLDTSDVYGPH----TNE--ILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRA 108 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g----~sE--~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~ 108 (343)
.|.+..++.++..++.|++-|=..-..|.+ ..| +++..+.+. ...++-|..-++.. +.+...+
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~-~~~~~~vi~gv~~~----------~~~~~i~ 83 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEA-VAGRVPVIAGVGAN----------STREAIE 83 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHH-hCCCCeEEEecCCc----------cHHHHHH
Confidence 588999999999999999988765555543 233 444444443 23445455444422 2222222
Q ss_pred HHHHHHHhcCCCcccEEEecCCCCCC-CHHHHHHHHHHHHHcCCcceEec--------CCCcHHHHHHHhc
Q 019272 109 ACEASLKRLDVDYIDLYYQHRIDTKV-PIEITIGELKKLVEEGKIKYIGL--------SEASASTIRRAHA 170 (343)
Q Consensus 109 ~~~~SL~rLg~d~iDl~~lH~~~~~~-~~~~~~~~L~~l~~~G~ir~iGv--------s~~~~~~l~~~~~ 170 (343)
.. +..+.+| +|-+++.-|.... ..+++++.+.++.+.-.+ -+.+ .+.+++.+.++.+
T Consensus 84 ~a-~~a~~~G---ad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~-pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 84 LA-RHAEEAG---ADGVLVVPPYYNKPSQEGIVAHFKAVADASDL-PVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HH-HHHHHcC---CCEEEECCCcCCCCCHHHHHHHHHHHHhcCCC-CEEEEECccccCCCCCHHHHHHHhc
Confidence 22 2335666 4555665554332 345666666666665221 1111 1345666777665
No 194
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=28.14 E-value=3e+02 Score=25.14 Aligned_cols=95 Identities=20% Similarity=0.239 Sum_probs=60.2
Q ss_pred HHhcCCCcccEEEecCCCCCCCHHHH-----HHHHHHHHHcCCcceEecCCCcHH-------HHHHHhcCCCeeEecccc
Q 019272 114 LKRLDVDYIDLYYQHRIDTKVPIEIT-----IGELKKLVEEGKIKYIGLSEASAS-------TIRRAHAVHPITAVQLEW 181 (343)
Q Consensus 114 L~rLg~d~iDl~~lH~~~~~~~~~~~-----~~~L~~l~~~G~ir~iGvs~~~~~-------~l~~~~~~~~~~~~q~~~ 181 (343)
++-++-.++|+..+....+.....+. -+.+.++..+--=|++|+.+.++. .+++......+.-+|+
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l-- 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKL-- 132 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEe--
Confidence 77788889999999852111112222 256777887778889999987653 3445555445544444
Q ss_pred cccccc------hhhhhHHHHHHhCCeEEecccCc
Q 019272 182 SLWTRD------AEAEIVPTCRELGIGIVAYSPLG 210 (343)
Q Consensus 182 ~~~~~~------~~~~ll~~~~~~gi~v~a~~pl~ 210 (343)
+...+. .-..++++|+++|+.|+-+....
T Consensus 133 ~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 133 HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 222221 11469999999999998865543
No 195
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=28.08 E-value=5e+02 Score=24.21 Aligned_cols=132 Identities=11% Similarity=0.145 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEe----------CcCCCCCC--chHHHHHHHhhcCCCC--CEEEEeecCcccCCCCCCCCC
Q 019272 36 PESDMIALIHHAIDNGITFLD----------TSDVYGPH--TNEILLGKALKGGYRE--RVELATKFGIINEDGQFLYRG 101 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~D----------TA~~Yg~g--~sE~~lG~al~~~~R~--~~~i~tK~~~~~~~~~~~~~~ 101 (343)
+.++..+..+.+.+.|+..|| +...||.. ..-+.+.+.++.. |+ .+-|+.|+.....+ ..
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~av-r~~v~~pVsvKiR~g~~~-----~~ 148 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAM-KDAVSIPVTVKHRIGIDD-----QD 148 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHH-HHHcCCceEEEEEeeeCC-----Cc
Confidence 567777888888899999998 34556632 2334555555442 22 35677776332111 11
Q ss_pred CHHHHHHHHHHHHHhcCCCcccEEEecCCCC-CCCHH---------HHHHHHHHHHHcC-CcceEecCC-CcHHHHHHHh
Q 019272 102 DPAYVRAACEASLKRLDVDYIDLYYQHRIDT-KVPIE---------ITIGELKKLVEEG-KIKYIGLSE-ASASTIRRAH 169 (343)
Q Consensus 102 s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~-~~~~~---------~~~~~L~~l~~~G-~ir~iGvs~-~~~~~l~~~~ 169 (343)
+.+. ...+-+.|+..| +|.+.+|.-.. ..... --|+.+.++++.- .|--||... .+++++++++
T Consensus 149 t~~~-~~~~~~~l~~aG---~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l 224 (333)
T PRK11815 149 SYEF-LCDFVDTVAEAG---CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHL 224 (333)
T ss_pred CHHH-HHHHHHHHHHhC---CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHH
Confidence 2222 223444566667 57778895321 00000 1256666666653 566666554 3566666666
Q ss_pred cCCCeeEecc
Q 019272 170 AVHPITAVQL 179 (343)
Q Consensus 170 ~~~~~~~~q~ 179 (343)
+. .+.+++
T Consensus 225 ~~--aDgVmI 232 (333)
T PRK11815 225 QH--VDGVMI 232 (333)
T ss_pred hc--CCEEEE
Confidence 53 455544
No 196
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=28.00 E-value=3.3e+02 Score=26.43 Aligned_cols=62 Identities=11% Similarity=-0.086 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCC------C-CHH---HHH-HHHHHHHHcCCcceEecCCCcHH
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTK------V-PIE---ITI-GELKKLVEEGKIKYIGLSEASAS 163 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~------~-~~~---~~~-~~L~~l~~~G~ir~iGvs~~~~~ 163 (343)
.-+.+.+.+.++..+ +|+.++|.+|.+.-.... . ..+ +.+ .+.+.|.+.|. +.+++++|...
T Consensus 204 ~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far~ 276 (430)
T PRK08208 204 GQTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRRN 276 (430)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceecC
Confidence 457788888887776 589999998887532211 0 111 222 34556677775 56999998753
No 197
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=27.82 E-value=5.1e+02 Score=24.24 Aligned_cols=104 Identities=17% Similarity=0.138 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCcccEEEecCC--------CCCCCHHHHHHHHHHHHHcCCcceEecCC---CcHHHHHH
Q 019272 99 YRGDPAYVRAACEASLKRLDVDYIDLYYQHRI--------DTKVPIEITIGELKKLVEEGKIKYIGLSE---ASASTIRR 167 (343)
Q Consensus 99 ~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~--------~~~~~~~~~~~~L~~l~~~G~ir~iGvs~---~~~~~l~~ 167 (343)
..++.+.+ ..+-+.|.+.|+++|.+-+.-.. ....+..+.++.+.+.. ...+...+.. ...+.++.
T Consensus 20 ~~f~~~~~-~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~--~~~~~~~ll~pg~~~~~dl~~ 96 (337)
T PRK08195 20 HQYTLEQV-RAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV--KQAKIAALLLPGIGTVDDLKM 96 (337)
T ss_pred CccCHHHH-HHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC--CCCEEEEEeccCcccHHHHHH
Confidence 35666765 55556699999999998532111 11112233444443322 2344443332 24567777
Q ss_pred HhcCCCeeEecccccccccchhhhhHHHHHHhCCeEEec
Q 019272 168 AHAVHPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAY 206 (343)
Q Consensus 168 ~~~~~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~ 206 (343)
+.+. .++.+.+..+.-....-.+.+++++++|..+...
T Consensus 97 a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 97 AYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 6655 3445544443333223357889999999877664
No 198
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=27.76 E-value=9e+02 Score=27.10 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHH-cCCc--ceEecCCCcHHHHHHHhcCCCeeEec
Q 019272 102 DPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVE-EGKI--KYIGLSEASASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 102 s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~-~G~i--r~iGvs~~~~~~l~~~~~~~~~~~~q 178 (343)
+.+.+.+..++. ..-|-+.||+-.= ....+.++.+..+..+.+ +-.+ --|-+-++.++.++.+++..+=..+-
T Consensus 366 d~~~a~~~A~~q-ve~GA~iIDVn~~---~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~II 441 (1178)
T TIGR02082 366 DYDEALDIAKQQ-VENGAQILDINVD---YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIV 441 (1178)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC---CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEE
Confidence 344444444433 3668899998542 122333444444444443 3212 23677788999999999873212233
Q ss_pred ccccccc--cchhhhhHHHHHHhCCeEEeccc
Q 019272 179 LEWSLWT--RDAEAEIVPTCRELGIGIVAYSP 208 (343)
Q Consensus 179 ~~~~~~~--~~~~~~ll~~~~~~gi~v~a~~p 208 (343)
+..|... .. ..++++.|+++|..++++.-
T Consensus 442 NsIs~~~g~~~-~~~~~~l~~~yga~vV~m~~ 472 (1178)
T TIGR02082 442 NSISLKDGEER-FIETAKLIKEYGAAVVVMAF 472 (1178)
T ss_pred EeCCCCCCCcc-HHHHHHHHHHhCCCEEEEec
Confidence 4445532 22 23799999999999999863
No 199
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=27.52 E-value=5.3e+02 Score=24.37 Aligned_cols=93 Identities=11% Similarity=0.009 Sum_probs=43.3
Q ss_pred EEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcH
Q 019272 83 ELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 83 ~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~ 162 (343)
+|..|+.............+.+.....+-+-|+..|+|+|++-.-++.... ... ....+.+++.=.+--+++..+++
T Consensus 227 ~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~-~~~--~~~~~~ik~~~~~pv~~~G~~~~ 303 (362)
T PRK10605 227 RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGE-PYS--DAFREKVRARFHGVIIGAGAYTA 303 (362)
T ss_pred eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCc-ccc--HHHHHHHHHHCCCCEEEeCCCCH
Confidence 488888654210000112344443345555667778888876532221111 111 11112233221222334444577
Q ss_pred HHHHHHhcCCCeeEec
Q 019272 163 STIRRAHAVHPITAVQ 178 (343)
Q Consensus 163 ~~l~~~~~~~~~~~~q 178 (343)
+.++++++....|.+-
T Consensus 304 ~~ae~~i~~G~~D~V~ 319 (362)
T PRK10605 304 EKAETLIGKGLIDAVA 319 (362)
T ss_pred HHHHHHHHcCCCCEEE
Confidence 7777777776655553
No 200
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=27.43 E-value=71 Score=24.90 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhhcC
Q 019272 35 KPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALKGG 77 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~ 77 (343)
.+.+.-.+++...++.|.+.-+.|..||- ++..|..|.+.+
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gI--s~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGV--AASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCc--CHHHHHHHHHHH
Confidence 36677788999999999999999999997 999999999885
No 201
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.42 E-value=6.4e+02 Score=26.26 Aligned_cols=99 Identities=10% Similarity=0.029 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc--CCCCCCchHHHHHHHhhcCCCCCEEEEe--ecCcccCC----CCCCC--CCC--
Q 019272 35 KPESDMIALIHHAIDNGITFLDTS--DVYGPHTNEILLGKALKGGYRERVELAT--KFGIINED----GQFLY--RGD-- 102 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA--~~Yg~g~sE~~lG~al~~~~R~~~~i~t--K~~~~~~~----~~~~~--~~s-- 102 (343)
.|+++.+++++...+.|+.-|=.+ ..|-+...|..+++.+++.. .++.|++ ++++..+. ....- ..+
T Consensus 136 lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~pi 214 (674)
T COG0145 136 LDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSPI 214 (674)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehHH
Confidence 588999999999999999988765 45777789999999999854 6777777 77764321 00000 011
Q ss_pred HHHHHHHHHHHHHhcCCCcccEEEecCCCCCCC
Q 019272 103 PAYVRAACEASLKRLDVDYIDLYYQHRIDTKVP 135 (343)
Q Consensus 103 ~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~ 135 (343)
-....++++..|+.-|.+ .+++++.+.....+
T Consensus 215 ~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl~~ 246 (674)
T COG0145 215 LRRYLEAVKDALKERGIK-ARLMVMQSDGGLVS 246 (674)
T ss_pred HHHHHHHHHHHHHhcCCC-ceeEEEecCCcccc
Confidence 244557777778887755 57888877654443
No 202
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=27.15 E-value=4.1e+02 Score=25.00 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEec
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQH 128 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH 128 (343)
.-+.+.+.+.++..+ +|+.++|.+|.+.
T Consensus 162 gqt~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 162 NQTLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 346777777776664 5788888887764
No 203
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=27.11 E-value=5e+02 Score=23.89 Aligned_cols=136 Identities=13% Similarity=0.074 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc---C------CCCCC---chHHHHHHHhhcC-CCCCEEEEeecCcccCCCCCCCCCC
Q 019272 36 PESDMIALIHHAIDNGITFLDTS---D------VYGPH---TNEILLGKALKGG-YRERVELATKFGIINEDGQFLYRGD 102 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA---~------~Yg~g---~sE~~lG~al~~~-~R~~~~i~tK~~~~~~~~~~~~~~s 102 (343)
+.++..+..+.+.+.|+..||.- + .|+.. ...+++.+.++.. ..-.+-|+.|+...+.+ +
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-------~ 145 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-------A 145 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC-------C
Confidence 66778888888889999999862 1 23221 1235555555542 11235688887532211 1
Q ss_pred HHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCH--HHHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCeeEecc
Q 019272 103 PAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPI--EITIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 103 ~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~--~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 179 (343)
...+ ..+-+.|+..|+ |.+.+|........ ...|+.+.++++.=.+--||... .++++++++++....+.+++
T Consensus 146 ~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 146 HINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred cchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 1111 245556777785 55666754322111 22467777777765577777665 46777888876666777776
Q ss_pred ccc
Q 019272 180 EWS 182 (343)
Q Consensus 180 ~~~ 182 (343)
---
T Consensus 222 gR~ 224 (319)
T TIGR00737 222 GRG 224 (319)
T ss_pred Chh
Confidence 433
No 204
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=27.02 E-value=2e+02 Score=27.59 Aligned_cols=68 Identities=15% Similarity=0.078 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCc--c-eEecCCCcHHHHHHHhcCCCeeEeccccccccc-chhhhhHHHHHHhCCeEEec
Q 019272 139 TIGELKKLVEEGKI--K-YIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAEIVPTCRELGIGIVAY 206 (343)
Q Consensus 139 ~~~~L~~l~~~G~i--r-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ll~~~~~~gi~v~a~ 206 (343)
-++.+.+|++.-.+ . .-|-+.++...++.+++...++++|+...-.-- ..-.++.+.|+.+|+.++.+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 36677777776442 2 337777888999999998889999987665432 22357999999999998765
No 205
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=26.96 E-value=3.9e+02 Score=22.67 Aligned_cols=102 Identities=16% Similarity=0.155 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhcCCCcccEEE-ecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcH--HHHHHHhcCCCeeEeccc
Q 019272 104 AYVRAACEASLKRLDVDYIDLYY-QHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASA--STIRRAHAVHPITAVQLE 180 (343)
Q Consensus 104 ~~i~~~~~~SL~rLg~d~iDl~~-lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~ 180 (343)
+.....+...+++.+...-.+++ +...........+.+.+..+++.|- .+++.++.. ..++.+.. .+++++=+.
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l~~-~~~d~iKld 174 (240)
T cd01948 98 PDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYLKR-LPVDYLKID 174 (240)
T ss_pred cHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHHHh-CCCCEEEEC
Confidence 34567788888888866422322 2222223344568899999999998 677776543 23333333 345655554
Q ss_pred cccccc--------chhhhhHHHHHHhCCeEEeccc
Q 019272 181 WSLWTR--------DAEAEIVPTCRELGIGIVAYSP 208 (343)
Q Consensus 181 ~~~~~~--------~~~~~ll~~~~~~gi~v~a~~p 208 (343)
.+.+.. ..-..+...|+..|+.+++-+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV 210 (240)
T cd01948 175 RSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGV 210 (240)
T ss_pred HHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEec
Confidence 443322 1124688899999999988664
No 206
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=26.83 E-value=1.5e+02 Score=22.59 Aligned_cols=53 Identities=15% Similarity=0.053 Sum_probs=30.5
Q ss_pred cCCCcHHHHHHHhcCCCeeEecccccccccchhhhhHHHHHHhCCeEEecccC
Q 019272 157 LSEASASTIRRAHAVHPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 157 vs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl 209 (343)
.+..+.+++..+....+++++-+-----.+....++.++++++||++..+..-
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 33445566666555433444433222111223457889999999999987763
No 207
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=26.76 E-value=5.3e+02 Score=24.11 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc
Q 019272 35 KPESDMIALIHHAIDNGITFLDTS 58 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA 58 (343)
.+.++..++++..-+.||..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 477889999999999999999995
No 208
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.74 E-value=2.9e+02 Score=24.58 Aligned_cols=84 Identities=21% Similarity=0.147 Sum_probs=53.2
Q ss_pred cEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEeccccccccc-chhhhhHHHHHHhCC
Q 019272 123 DLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-DAEAEIVPTCRELGI 201 (343)
Q Consensus 123 Dl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~ll~~~~~~gi 201 (343)
++.++-.|-+ .+-++.+.++. .+.=-..|=|-++...+..+++...++++|+.....-- ..-..+.+.|+.+|+
T Consensus 154 ~i~~iEqP~~----~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi 228 (263)
T cd03320 154 RIEYIEQPLP----PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGI 228 (263)
T ss_pred CCceEECCCC----hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCC
Confidence 4444444433 23355555655 33333556666777778888887778888887665431 223578999999999
Q ss_pred eEEecccCcc
Q 019272 202 GIVAYSPLGR 211 (343)
Q Consensus 202 ~v~a~~pl~~ 211 (343)
.++..+-+..
T Consensus 229 ~~~~~~~~es 238 (263)
T cd03320 229 PAVVSSALES 238 (263)
T ss_pred CEEEEcchhh
Confidence 9988754443
No 209
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=26.72 E-value=5.1e+02 Score=23.93 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCc------hHHHHHHHhhcCC-CCCEEEEeecCcccCCCCCCCCCCHHHHH
Q 019272 35 KPESDMIALIHHAIDNGITFLDTSDVYGPHT------NEILLGKALKGGY-RERVELATKFGIINEDGQFLYRGDPAYVR 107 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~------sE~~lG~al~~~~-R~~~~i~tK~~~~~~~~~~~~~~s~~~i~ 107 (343)
.+.++..++++.+.+.|+..|--+ | |+ -+.++.. +++.. ..++.|.|-... +.
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~t---G-GEPllr~dl~~li~~-i~~~~~l~~i~itTNG~l---------------l~ 104 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLT---G-GEPLVRRGCDQLVAR-LGKLPGLEELSLTTNGSR---------------LA 104 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-cCCCccccHHHHHHH-HHhCCCCceEEEEeChhH---------------HH
Confidence 578889999999999999887643 2 21 2223322 22211 224555554221 22
Q ss_pred HHHHHHHHhcCCCcccEEEecCCCCC--------CCHHHHHHHHHHHHHcCC
Q 019272 108 AACEASLKRLDVDYIDLYYQHRIDTK--------VPIEITIGELKKLVEEGK 151 (343)
Q Consensus 108 ~~~~~SL~rLg~d~iDl~~lH~~~~~--------~~~~~~~~~L~~l~~~G~ 151 (343)
+ .-+.|...|+++|- +-|+..++. ..++.+++.++.+++.|.
T Consensus 105 ~-~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 105 R-FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred H-HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCC
Confidence 2 34556677877665 355554331 235677777777777664
No 210
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=26.72 E-value=4.3e+02 Score=23.05 Aligned_cols=141 Identities=13% Similarity=0.143 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHcCCCeEeCcCCCCCC-chHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 019272 37 ESDMIALIHHAIDNGITFLDTSDVYGPH-TNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLK 115 (343)
Q Consensus 37 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g-~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~ 115 (343)
.....++++.|.+.|+..|=.+++.... ..+. ..+.++ ++-|-+-+-.. ....+.+.+- ++
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~-~~~~~~-----~i~Il~GiEi~--------~~~~~~~~~~----~~ 76 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKP-ELEDLL-----GFEIFRGVEIV--------ASNPSKLRGL----VG 76 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhH-HHHHhc-----CCcEEeeEEEe--------cCCHHHHHHH----HH
Confidence 3457899999999999988777764311 0111 111121 23332222111 1233433333 33
Q ss_pred hcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCC-------cHHHHHHHhcCCCeeEecccccccccc-
Q 019272 116 RLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEA-------SASTIRRAHAVHPITAVQLEWSLWTRD- 187 (343)
Q Consensus 116 rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-------~~~~l~~~~~~~~~~~~q~~~~~~~~~- 187 (343)
+.. +.+|++.+|.-. +.+. ..+.+.+.|.-||--.. ....++.+.+.. .++.+.++.+...
T Consensus 77 ~~~-~~~d~v~v~~~~-----~~~~---~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g--v~lEIn~s~~~~~~ 145 (237)
T PRK00912 77 KFR-KKVDVLAVHGGD-----EKVN---RAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN--VAIEFNLRDILKSR 145 (237)
T ss_pred hcc-CcccEEEEeCCC-----HHHH---HHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC--eEEEEEchHhhhhc
Confidence 322 356888899211 2222 35777888887776532 222333333332 2344445433111
Q ss_pred ---------hhhhhHHHHHHhCCeEEec
Q 019272 188 ---------AEAEIVPTCRELGIGIVAY 206 (343)
Q Consensus 188 ---------~~~~ll~~~~~~gi~v~a~ 206 (343)
+...++..|++.|+.++.-
T Consensus 146 ~~~r~~~~~~~~~~~~~~~~~g~piiis 173 (237)
T PRK00912 146 GGRRARTLSNFRDNLALARKYDFPLVLT 173 (237)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 1246899999999887643
No 211
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=26.60 E-value=4.8e+02 Score=23.51 Aligned_cols=124 Identities=10% Similarity=0.001 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCC------C-CCch-HHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHH
Q 019272 35 KPESDMIALIHHAIDNGITFLDTSDVY------G-PHTN-EILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYV 106 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA~~Y------g-~g~s-E~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i 106 (343)
.+.++..++.....+.||..|+....- + .+.. ++.+..+.+..++.++...+..-.... ...+..+..
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~----~~~~p~~~~ 93 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVG----YRHYPDDVV 93 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccC----ccCCCcHHH
Confidence 467888888888889999999987421 0 1223 344433333334434433332110000 001112223
Q ss_pred HHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEec-----CCCcHHHHHHH
Q 019272 107 RAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGL-----SEASASTIRRA 168 (343)
Q Consensus 107 ~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGv-----s~~~~~~l~~~ 168 (343)
+..++.+. ..|++.|-+ ..+..+++.+.+.++..++.|+.-..++ +.++++.+.++
T Consensus 94 ~~di~~~~-~~g~~~iri-----~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~ 154 (275)
T cd07937 94 ELFVEKAA-KNGIDIFRI-----FDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKL 154 (275)
T ss_pred HHHHHHHH-HcCCCEEEE-----eecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHH
Confidence 33333333 445444333 2233446778888899999997544333 34555554433
No 212
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.52 E-value=5e+02 Score=23.76 Aligned_cols=94 Identities=12% Similarity=0.000 Sum_probs=47.1
Q ss_pred CCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCC----------HHHHHHHHHHHHH
Q 019272 79 RERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVP----------IEITIGELKKLVE 148 (343)
Q Consensus 79 R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~----------~~~~~~~L~~l~~ 148 (343)
.+++.|..|+....... ...+.+.. ..+-+-|+.+|+|||+ +|......+ ....++.+..+++
T Consensus 206 g~d~~i~vris~~~~~~---~g~~~~e~-~~la~~l~~~G~d~i~---vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 278 (327)
T cd02803 206 GPDFPVGVRLSADDFVP---GGLTLEEA-IEIAKALEEAGVDALH---VSGGSYESPPPIIPPPYVPEGYFLELAEKIKK 278 (327)
T ss_pred CCCceEEEEechhccCC---CCCCHHHH-HHHHHHHHHcCCCEEE---eCCCCCcccccccCCCCCCcchhHHHHHHHHH
Confidence 35677888887532110 11344433 3344456677755554 343322110 1223444555555
Q ss_pred cCCcceEecCCC-cHHHHHHHhcCCCeeEecc
Q 019272 149 EGKIKYIGLSEA-SASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 149 ~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 179 (343)
.=.+--++..+. +++.++++++....+.+++
T Consensus 279 ~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 279 AVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred HCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 445555666554 3667777776655555554
No 213
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=26.46 E-value=3.2e+02 Score=24.69 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecCCCC-C----CCHHHHHHHHHHHHHc---CCcce-------EecCCCcH--
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQHRIDT-K----VPIEITIGELKKLVEE---GKIKY-------IGLSEASA-- 162 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~-~----~~~~~~~~~L~~l~~~---G~ir~-------iGvs~~~~-- 162 (343)
.++.+.. ..+-..|.++|+++|++-. |.. . ..-++-++.++.+.+. -++.. +|++.++.
T Consensus 17 ~~~~~~~-~~ia~~L~~~Gv~~iE~G~---~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~ 92 (275)
T cd07937 17 RMRTEDM-LPIAEALDEAGFFSLEVWG---GATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDV 92 (275)
T ss_pred eccHHHH-HHHHHHHHHcCCCEEEccC---CcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHH
Confidence 3455544 4458899999999988863 321 0 0011224444444433 22222 33333333
Q ss_pred --HHHHHHhcCCCeeEecccccccccchhhhhHHHHHHhCCeEEe
Q 019272 163 --STIRRAHAVHPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 163 --~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a 205 (343)
..++.+.+. .++.+.+-..+-+-..-.+.+++++++|+.+..
T Consensus 93 ~~~di~~~~~~-g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 93 VELFVEKAAKN-GIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred HHHHHHHHHHc-CCCEEEEeecCChHHHHHHHHHHHHHCCCeEEE
Confidence 334444433 344554433332222235788999999987765
No 214
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=26.40 E-value=4e+02 Score=26.01 Aligned_cols=15 Identities=0% Similarity=-0.028 Sum_probs=9.8
Q ss_pred CeEEecccCccccCC
Q 019272 201 IGIVAYSPLGRGFFS 215 (343)
Q Consensus 201 i~v~a~~pl~~G~l~ 215 (343)
..+++.++=|.|.+.
T Consensus 317 ~~~iglG~gA~s~~~ 331 (453)
T PRK09249 317 CDLIGLGVSAISRIG 331 (453)
T ss_pred CeEEEECcCcccCCC
Confidence 456777776666654
No 215
>PRK07094 biotin synthase; Provisional
Probab=26.38 E-value=3.6e+02 Score=24.73 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEe
Q 019272 36 PESDMIALIHHAIDNGITFLD 56 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~D 56 (343)
+.++..+.++.+.+.|++.|-
T Consensus 71 s~eei~~~~~~~~~~g~~~i~ 91 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIV 91 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEE
Confidence 677788888889999998774
No 216
>PTZ00413 lipoate synthase; Provisional
Probab=26.22 E-value=5.9e+02 Score=24.48 Aligned_cols=159 Identities=16% Similarity=0.215 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCC----CCchHHHHHHHhhcCC--CCCEEEEeecCcccCCCCCCCCCCHHHHHH
Q 019272 35 KPESDMIALIHHAIDNGITFLDTSDVYG----PHTNEILLGKALKGGY--RERVELATKFGIINEDGQFLYRGDPAYVRA 108 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg----~g~sE~~lG~al~~~~--R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~ 108 (343)
.+.++..++-+.+.+.|++|+=.+..-+ +|.++. +.+.++... ..++.|..=++-. ..+.+.+
T Consensus 177 lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~-~a~~I~~Ir~~~p~~~IevligDf--------~g~~e~l-- 245 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASH-VARCVELIKESNPELLLEALVGDF--------HGDLKSV-- 245 (398)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHH-HHHHHHHHHccCCCCeEEEcCCcc--------ccCHHHH--
Confidence 4778888888888899998775444443 222333 334554421 2345565555421 1133222
Q ss_pred HHHHHHHhcCCCcccEEEecCCCC-----------CCCHHHHHHHHHHHHHc--CCcc-----eEecCCCcHHHHHHHhc
Q 019272 109 ACEASLKRLDVDYIDLYYQHRIDT-----------KVPIEITIGELKKLVEE--GKIK-----YIGLSEASASTIRRAHA 170 (343)
Q Consensus 109 ~~~~SL~rLg~d~iDl~~lH~~~~-----------~~~~~~~~~~L~~l~~~--G~ir-----~iGvs~~~~~~l~~~~~ 170 (343)
+.|..-| +|.| -|+.+. ...+++.++.|+..++. |.|. -+|+..-..+.++-+.+
T Consensus 246 ---~~L~eAG---~dvy-nHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~d 318 (398)
T PTZ00413 246 ---EKLANSP---LSVY-AHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRD 318 (398)
T ss_pred ---HHHHhcC---CCEE-ecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHHH
Confidence 2233344 4543 355421 23578889999988875 3332 25666555444443333
Q ss_pred C--CCeeEecc-ccc-------cccc----chhhhhHHHHHHhCCeEEecccCcc
Q 019272 171 V--HPITAVQL-EWS-------LWTR----DAEAEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 171 ~--~~~~~~q~-~~~-------~~~~----~~~~~ll~~~~~~gi~v~a~~pl~~ 211 (343)
. ..++++.+ +|= ++.+ .....+-+.+.+.|...++-+||-.
T Consensus 319 LrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 319 LRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 2 33333332 221 1111 1124677788889999999999875
No 217
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=26.20 E-value=3.5e+02 Score=22.07 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHcCCCeEeCcCCCC-CCc-----hHHHHHHHhhcCC-CCCEEEEeecCcccCCCCCCCCCCHHHHHHH
Q 019272 37 ESDMIALIHHAIDNGITFLDTSDVYG-PHT-----NEILLGKALKGGY-RERVELATKFGIINEDGQFLYRGDPAYVRAA 109 (343)
Q Consensus 37 ~~~~~~~l~~A~~~Gin~~DTA~~Yg-~g~-----sE~~lG~al~~~~-R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~ 109 (343)
.+...+.++.|++.|.++|++--..- +|. .-..+-++|+..+ .-.+.|=.|.... .+...+.
T Consensus 12 pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hdi~tL~e~l~~~~~~~~i~leiK~~~~-----------~~~~~~~ 80 (189)
T cd08556 12 PENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHDIPTLEEVLELVKGGVGLNIELKEPTR-----------YPGLEAK 80 (189)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCCCHHHHHHhcccCcEEEEEECCCCC-----------chhHHHH
Confidence 36678889999999999887543221 110 1122233333222 2224444443210 2334555
Q ss_pred HHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCC--cHHHHH-HHhcCCCeeEeccccccccc
Q 019272 110 CEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEA--SASTIR-RAHAVHPITAVQLEWSLWTR 186 (343)
Q Consensus 110 ~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~--~~~~l~-~~~~~~~~~~~q~~~~~~~~ 186 (343)
+-+.+++.+. .+-+++...+. +.+..+.+...+ . .+|+... ...... .......++.+.+.+..+
T Consensus 81 l~~~i~~~~~--~~~v~i~s~~~-----~~l~~~~~~~p~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 148 (189)
T cd08556 81 VAELLREYGL--EERVVVSSFDH-----EALRALKELDPE-V--PTGLLVDKPPLDPLLAELARALGADAVNPHYKLL-- 148 (189)
T ss_pred HHHHHHHcCC--cCCEEEEeCCH-----HHHHHHHHhCCC-C--cEEEEeecCcccchhhhHHHhcCCeEEccChhhC--
Confidence 6666666652 23444444322 233333332211 1 1222221 111110 122223344455554432
Q ss_pred chhhhhHHHHHHhCCeEEeccc
Q 019272 187 DAEAEIVPTCRELGIGIVAYSP 208 (343)
Q Consensus 187 ~~~~~ll~~~~~~gi~v~a~~p 208 (343)
...+++.|+++|+.+++|..
T Consensus 149 --~~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 149 --TPELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred --CHHHHHHHHHcCCEEEEEcC
Confidence 24789999999999999975
No 218
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=26.17 E-value=5.6e+02 Score=24.18 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCcHHHHHHHhcCCCeeEec
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGK-IKYIGLSEASASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q 178 (343)
.++.+.. ..+-+.|.++|+++|.+- +|... +.-++.++.+.+.+. .+..+++....+.++.+.+.. ++.+.
T Consensus 19 ~~s~~~k-~~ia~~L~~~Gv~~IEvG---~p~~~---~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~i~ 90 (365)
T TIGR02660 19 AFTAAEK-LAIARALDEAGVDELEVG---IPAMG---EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCG-VDAVH 90 (365)
T ss_pred CCCHHHH-HHHHHHHHHcCCCEEEEe---CCCCC---HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCC-cCEEE
Confidence 4566654 556666999999888874 33321 233666667766643 667777777788888877652 22332
Q ss_pred cccccc--------ccchh------hhhHHHHHHhCCeEE
Q 019272 179 LEWSLW--------TRDAE------AEIVPTCRELGIGIV 204 (343)
Q Consensus 179 ~~~~~~--------~~~~~------~~ll~~~~~~gi~v~ 204 (343)
+....- ....+ .+.+++++++|..+.
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 222211 11111 367889999998755
No 219
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=26.05 E-value=5.3e+02 Score=23.99 Aligned_cols=132 Identities=15% Similarity=0.093 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc----------CCCCCC--chHHHHHHHhhcC---CCCCEEEEeecCcccCCCCCCCC
Q 019272 36 PESDMIALIHHAIDNGITFLDTS----------DVYGPH--TNEILLGKALKGG---YRERVELATKFGIINEDGQFLYR 100 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA----------~~Yg~g--~sE~~lG~al~~~---~R~~~~i~tK~~~~~~~~~~~~~ 100 (343)
+.+...+.-+.+-+.|+..||-- ..+|.. .+-..+.+.++.. .. ++-|+.|+-..+.+
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRlG~d~------ 149 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRLGWDD------ 149 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEecccCc------
Confidence 56778888888999999999942 122321 2556666666542 22 67899998655421
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCH--HHHHHHHHHHHHcCC-cceEecCC-CcHHHHHHHhcCCCeeE
Q 019272 101 GDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPI--EITIGELKKLVEEGK-IKYIGLSE-ASASTIRRAHAVHPITA 176 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~--~~~~~~L~~l~~~G~-ir~iGvs~-~~~~~l~~~~~~~~~~~ 176 (343)
.+.....+.+.++.-| +|.+.+|.-...... ..-|+.+.++++.=. |--||=.+ ++.+...+.++....+.
T Consensus 150 --~~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~Dg 224 (323)
T COG0042 150 --DDILALEIARILEDAG---ADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADG 224 (323)
T ss_pred --ccccHHHHHHHHHhcC---CCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCE
Confidence 1123455667777777 688999976433221 135777778877755 55555554 67888888888877777
Q ss_pred ecc
Q 019272 177 VQL 179 (343)
Q Consensus 177 ~q~ 179 (343)
+++
T Consensus 225 VMi 227 (323)
T COG0042 225 VMI 227 (323)
T ss_pred EEE
Confidence 765
No 220
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=26.03 E-value=1.9e+02 Score=25.33 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=26.3
Q ss_pred eeEecccccccccchhhhhHHHHHHhCCeEEec
Q 019272 174 ITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAY 206 (343)
Q Consensus 174 ~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~ 206 (343)
+..+=-+||++++....++.+..++.|+.|+..
T Consensus 186 Ivl~GrpY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 186 IVLLGRPYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred EEEEcCCCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 333444899999888889999999999998864
No 221
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=25.99 E-value=4.1e+02 Score=22.74 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=16.4
Q ss_pred hhhHHHHHHhCCeEEeccc
Q 019272 190 AEIVPTCRELGIGIVAYSP 208 (343)
Q Consensus 190 ~~ll~~~~~~gi~v~a~~p 208 (343)
.++++.|+++|+.|.+|..
T Consensus 189 ~~~v~~~~~~g~~v~~wTv 207 (229)
T cd08562 189 EEQVKALKDAGYKLLVYTV 207 (229)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 4789999999999999965
No 222
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=25.99 E-value=5.4e+02 Score=23.88 Aligned_cols=133 Identities=10% Similarity=0.096 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEe----------CcCCCCCC--chHHHHHHHhhcC-CCCCEEEEeecCcccCCCCCCCCCC
Q 019272 36 PESDMIALIHHAIDNGITFLD----------TSDVYGPH--TNEILLGKALKGG-YRERVELATKFGIINEDGQFLYRGD 102 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~D----------TA~~Yg~g--~sE~~lG~al~~~-~R~~~~i~tK~~~~~~~~~~~~~~s 102 (343)
+.++..+..+.+.+.|+..|| +...||.. ..-+.+.+.++.. ..-++-|+.|+...+.+ ..+
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~-----~~~ 139 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP-----LDS 139 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC-----cch
Confidence 667777888888889999999 44455642 2334455555442 11245688888654321 112
Q ss_pred HHHHHHHHHHHHHhcCCCcccEEEecCCCC-CCCH---------HHHHHHHHHHHHcC-CcceEecCC-CcHHHHHHHhc
Q 019272 103 PAYVRAACEASLKRLDVDYIDLYYQHRIDT-KVPI---------EITIGELKKLVEEG-KIKYIGLSE-ASASTIRRAHA 170 (343)
Q Consensus 103 ~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~-~~~~---------~~~~~~L~~l~~~G-~ir~iGvs~-~~~~~l~~~~~ 170 (343)
.+.. ..+-+.|+..| +|.+-+|.-.. ...+ .--|+...++++.- .|--||..+ ++.+++.+.+.
T Consensus 140 ~~~~-~~~~~~l~~~G---~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~ 215 (318)
T TIGR00742 140 YEFL-CDFVEIVSGKG---CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS 215 (318)
T ss_pred HHHH-HHHHHHHHHcC---CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh
Confidence 2222 24444566666 78888997532 0000 01366666666654 566666554 45666666553
Q ss_pred CCCeeEecc
Q 019272 171 VHPITAVQL 179 (343)
Q Consensus 171 ~~~~~~~q~ 179 (343)
..+.+|+
T Consensus 216 --g~dgVMi 222 (318)
T TIGR00742 216 --HVDGVMV 222 (318)
T ss_pred --CCCEEEE
Confidence 3555554
No 223
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.97 E-value=4.4e+02 Score=25.57 Aligned_cols=108 Identities=13% Similarity=0.099 Sum_probs=54.7
Q ss_pred cCCCCCCchHHHHHHHhhc----CCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCC-CcccEEEecCCCC
Q 019272 58 SDVYGPHTNEILLGKALKG----GYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDV-DYIDLYYQHRIDT 132 (343)
Q Consensus 58 A~~Yg~g~sE~~lG~al~~----~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~-d~iDl~~lH~~~~ 132 (343)
.-.|| .|+-|-+++++ .+.+=++|.|-+-... --+.+...+++.-++... ..+.++.++.|..
T Consensus 64 d~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~i---------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf 131 (435)
T cd01974 64 AAVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEV---------IGDDLNAFIKNAKNKGSIPADFPVPFANTPSF 131 (435)
T ss_pred ceEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCchHhh---------hhccHHHHHHHHHHhccCCCCCeEEEecCCCC
Confidence 34677 56777777765 2344456666654321 112233333333233311 1478999998865
Q ss_pred CCCH----HHHHHHHHH-HHH-------cCCcceEe-cCCC-c-HHHHHHHhcCCCeeEe
Q 019272 133 KVPI----EITIGELKK-LVE-------EGKIKYIG-LSEA-S-ASTIRRAHAVHPITAV 177 (343)
Q Consensus 133 ~~~~----~~~~~~L~~-l~~-------~G~ir~iG-vs~~-~-~~~l~~~~~~~~~~~~ 177 (343)
.... +.++++|.+ +.. .+.|--|| ..+. + .+.++++++...+.++
T Consensus 132 ~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 132 VGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 5432 334444432 222 23455565 2222 2 5677777776555554
No 224
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=25.91 E-value=3.9e+02 Score=25.26 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=59.3
Q ss_pred CCCCEEEEeecCccc-------CCCCCCCCCCHHHHHHHHHHHHHhcCCC---cccEEEecCC-CCCCCHHHHHHHHHHH
Q 019272 78 YRERVELATKFGIIN-------EDGQFLYRGDPAYVRAACEASLKRLDVD---YIDLYYQHRI-DTKVPIEITIGELKKL 146 (343)
Q Consensus 78 ~R~~~~i~tK~~~~~-------~~~~~~~~~s~~~i~~~~~~SL~rLg~d---~iDl~~lH~~-~~~~~~~~~~~~L~~l 146 (343)
.|..+.|+|-+|=.- ..++...+.+...|..|+....++++.. .+.=+.+-.. ++...++.+..+++-+
T Consensus 99 ~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~ 178 (349)
T COG0820 99 DRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEII 178 (349)
T ss_pred CCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHhh
Confidence 456677888776321 1234556889999999999999999864 2333333333 3333456778888877
Q ss_pred HH-cCC---cceEecCCCc-HHHHHHHhc
Q 019272 147 VE-EGK---IKYIGLSEAS-ASTIRRAHA 170 (343)
Q Consensus 147 ~~-~G~---ir~iGvs~~~-~~~l~~~~~ 170 (343)
.+ .|. .|+|=+|+.. ...|.++.+
T Consensus 179 ~~~~G~~ls~R~iTvSTsGi~~~I~~l~~ 207 (349)
T COG0820 179 NDDEGLGLSKRRITVSTSGIVPRIRKLAD 207 (349)
T ss_pred cCcccccccceEEEEecCCCchhHHHHHh
Confidence 64 332 2778888766 456666664
No 225
>PRK07328 histidinol-phosphatase; Provisional
Probab=25.68 E-value=4.8e+02 Score=23.26 Aligned_cols=105 Identities=14% Similarity=0.076 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCCeEeCcCCCCC------------CchHHHHHHHh------hc-CCCCCEEEEeecCcccCCCCCCCC
Q 019272 40 MIALIHHAIDNGITFLDTSDVYGP------------HTNEILLGKAL------KG-GYRERVELATKFGIINEDGQFLYR 100 (343)
Q Consensus 40 ~~~~l~~A~~~Gin~~DTA~~Yg~------------g~sE~~lG~al------~~-~~R~~~~i~tK~~~~~~~~~~~~~ 100 (343)
..++++.|.+.|+..+=-++|.-. +-+..-+-..+ ++ ..+=++++..=++..
T Consensus 20 ~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~--------- 90 (269)
T PRK07328 20 PEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYH--------- 90 (269)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccc---------
Confidence 668899999999998876665321 01111122222 22 111123333333222
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEEecCCCCC-------------CCHHHH----HHHHHHHHHcCCcceEec
Q 019272 101 GDPAYVRAACEASLKRLDVDYIDLYYQHRIDTK-------------VPIEIT----IGELKKLVEEGKIKYIGL 157 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~-------------~~~~~~----~~~L~~l~~~G~ir~iGv 157 (343)
+ .....+++.|++-..||+ +.-+|+.+.. .+.++. ++.+.++.+.|.+.-+|=
T Consensus 91 --~-~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH 160 (269)
T PRK07328 91 --P-GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGH 160 (269)
T ss_pred --C-CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeC
Confidence 1 124556667777777877 8888986421 112223 235677777777666653
No 226
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=25.49 E-value=3.4e+02 Score=21.63 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHh----cCCC----------cccEEEecCC--CCCCCHHHHHHHHHHHHH
Q 019272 101 GDPAYVRAACEASLKR----LDVD----------YIDLYYQHRI--DTKVPIEITIGELKKLVE 148 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~r----Lg~d----------~iDl~~lH~~--~~~~~~~~~~~~L~~l~~ 148 (343)
..+..|++.+.++.+. |..+ ++|++++..+ ....+.+++-+.|..|.+
T Consensus 65 V~RNRiKR~lREa~R~~~~~l~~~~~~~~~~~~~~~~iv~i~~~~~~~~~~~~~l~~~l~~ll~ 128 (133)
T PRK01903 65 VKRNRIKRLMREAYRLEKHVLLDRLETDAGAKNRQLAIAFLYTGRSDEIPSLAEFRREMRKLLQ 128 (133)
T ss_pred hhhhHHHHHHHHHHHHhHhhhcccccccccccCcceEEEEEEeccccccCCHHHHHHHHHHHHH
Confidence 3566777777777765 4322 4799999887 443456666666666544
No 227
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=25.49 E-value=2.6e+02 Score=27.15 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=52.8
Q ss_pred HHhcCCCcccEEEecCCCC-CCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcC--------CCeeEeccccccc
Q 019272 114 LKRLDVDYIDLYYQHRIDT-KVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAV--------HPITAVQLEWSLW 184 (343)
Q Consensus 114 L~rLg~d~iDl~~lH~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~--------~~~~~~q~~~~~~ 184 (343)
.+.||++|. ++..|-. ... ..+-...+-+.|-+..+|..+.+++.+++.+.. .+|-+|.+ .++-
T Consensus 7 ~~~lgiryP---ii~gpMa~Gis---s~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~ 79 (418)
T cd04742 7 KEDYGLRYA---YVAGAMARGIA---SAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPD 79 (418)
T ss_pred HHHhCCCcc---EECCcccCCCC---CHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCC
Confidence 456776654 3333322 111 223344555689999999999999887654432 35665543 2222
Q ss_pred ccchhhhhHHHHHHhCCeEEecc
Q 019272 185 TRDAEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 185 ~~~~~~~ll~~~~~~gi~v~a~~ 207 (343)
+...+.++++.|.++||.++..+
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~s 102 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEAS 102 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEec
Confidence 22234678999999999877654
No 228
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=25.06 E-value=5.7e+02 Score=23.88 Aligned_cols=104 Identities=18% Similarity=0.160 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCcccEEEe--------c-CCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHH
Q 019272 99 YRGDPAYVRAACEASLKRLDVDYIDLYYQ--------H-RIDTKVPIEITIGELKKLVEEGKIKYIGLS-EASASTIRRA 168 (343)
Q Consensus 99 ~~~s~~~i~~~~~~SL~rLg~d~iDl~~l--------H-~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~ 168 (343)
..++.+.+ ..+-+.|.+.|+++|.+-.. . .+... +..+.++.+.+..+.-++..+-+. ....+.++.+
T Consensus 19 ~~f~~~~~-~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~-~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a 96 (333)
T TIGR03217 19 HQFTIEQV-RAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAH-TDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAA 96 (333)
T ss_pred CcCCHHHH-HHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCC-ChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHH
Confidence 35566654 55666699999999988522 1 12111 222333333333333232222111 1245677776
Q ss_pred hcCCCeeEecccccccccchhhhhHHHHHHhCCeEEe
Q 019272 169 HAVHPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 169 ~~~~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a 205 (343)
.+. .++.+.+..+.-+-..-.+.+++++++|..+..
T Consensus 97 ~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 97 YDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEE
Confidence 665 345555444433322235788889999977654
No 229
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=24.96 E-value=4.1e+02 Score=23.64 Aligned_cols=17 Identities=29% Similarity=0.802 Sum_probs=11.2
Q ss_pred hhhHHHHHHhCCeEEec
Q 019272 190 AEIVPTCRELGIGIVAY 206 (343)
Q Consensus 190 ~~ll~~~~~~gi~v~a~ 206 (343)
...++.|++.|+..+..
T Consensus 88 ~~~i~~A~~lG~~~v~~ 104 (279)
T cd00019 88 KDEIERCEELGIRLLVF 104 (279)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 35677777777776654
No 230
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=24.87 E-value=94 Score=19.83 Aligned_cols=20 Identities=25% Similarity=0.046 Sum_probs=12.6
Q ss_pred HHHHHHHHhCCCHHHHHHHH
Q 019272 250 RVNEIAAKKGCTPSQLALAW 269 (343)
Q Consensus 250 ~l~~ia~~~~~s~~q~al~~ 269 (343)
.++.+.++.|+|..++|-..
T Consensus 6 ~l~~~r~~~gltq~~lA~~~ 25 (58)
T TIGR03070 6 LVRARRKALGLTQADLADLA 25 (58)
T ss_pred HHHHHHHHcCCCHHHHHHHh
Confidence 45556666677777766443
No 231
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=24.71 E-value=3.9e+02 Score=24.48 Aligned_cols=105 Identities=16% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhc---CCCcccEE------EecCCCCCCCHHHHHHHHHHHHHcCCcce----EecCCCcHHHHHH
Q 019272 101 GDPAYVRAACEASLKRL---DVDYIDLY------YQHRIDTKVPIEITIGELKKLVEEGKIKY----IGLSEASASTIRR 167 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rL---g~d~iDl~------~lH~~~~~~~~~~~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~ 167 (343)
.+++.+.......++++ |+-|+|+. .-+..+.....+..++++++.+++--|+. .+..+.+.+.+++
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~ 145 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQE 145 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHH
Q ss_pred Hhc---------CCCeeEecccccccccchhhhhHHHHHHhCCeEEec
Q 019272 168 AHA---------VHPITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAY 206 (343)
Q Consensus 168 ~~~---------~~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~ 206 (343)
.++ ...++..-.+... ....-..+++.|+++|+.+..+
T Consensus 146 ~~~~~~~~~~~~vvg~~l~~~~~~~-~~~~~~~~~~~A~~~g~~v~~H 192 (325)
T cd01320 146 TLELALKYRDKGVVGFDLAGDEVGF-PPEKFVRAFQRAREAGLRLTAH 192 (325)
T ss_pred HHHHHHhccCCCEEEeecCCCCCCC-CHHHHHHHHHHHHHCCCceEEe
No 232
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=24.71 E-value=3.6e+02 Score=21.41 Aligned_cols=62 Identities=18% Similarity=0.137 Sum_probs=42.8
Q ss_pred CCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCC----CcccEEEecCCCCC-CCHHHHHHHHHHHHH
Q 019272 78 YRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDV----DYIDLYYQHRIDTK-VPIEITIGELKKLVE 148 (343)
Q Consensus 78 ~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~----d~iDl~~lH~~~~~-~~~~~~~~~L~~l~~ 148 (343)
.|=-+.|+-|+|. ...+..|++.+.++++.+.. ...|++++-.+... .+..++.+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~---------AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGN---------AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCc---------chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 3445667777663 34578888888888887643 56899999988643 456677777776655
No 233
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.38 E-value=2.2e+02 Score=24.56 Aligned_cols=87 Identities=10% Similarity=0.124 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCC-CeeEecc
Q 019272 102 DPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVH-PITAVQL 179 (343)
Q Consensus 102 s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~ 179 (343)
+++... .+-+.|-+-|+.-|.+= +-. .+..+.+++++++..=-.||..+ .+.++++++++.. .|-
T Consensus 14 ~~~~a~-~ia~al~~gGi~~iEit---~~t-----p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi---- 80 (201)
T PRK06015 14 DVEHAV-PLARALAAGGLPAIEIT---LRT-----PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI---- 80 (201)
T ss_pred CHHHHH-HHHHHHHHCCCCEEEEe---CCC-----ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE----
Confidence 444443 34445556675555442 211 23456666666554335688876 5788888888763 332
Q ss_pred cccccccchhhhhHHHHHHhCCeEEe
Q 019272 180 EWSLWTRDAEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 180 ~~~~~~~~~~~~ll~~~~~~gi~v~a 205 (343)
.++ ....+++++|+++||.++.
T Consensus 81 -vSP---~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 81 -VSP---GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred -ECC---CCCHHHHHHHHHcCCCEeC
Confidence 122 2346899999999998875
No 234
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=24.34 E-value=4.7e+02 Score=22.66 Aligned_cols=21 Identities=14% Similarity=0.368 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCCCeEeC
Q 019272 37 ESDMIALIHHAIDNGITFLDT 57 (343)
Q Consensus 37 ~~~~~~~l~~A~~~Gin~~DT 57 (343)
.|.....++.|++.|+..|.+
T Consensus 12 pENT~~af~~a~~~g~d~vE~ 32 (234)
T cd08570 12 PENTLLAFEKAVEAGADAIET 32 (234)
T ss_pred CccHHHHHHHHHHhCCCEEEE
Confidence 356788899999999998764
No 235
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=24.30 E-value=6.6e+02 Score=24.35 Aligned_cols=96 Identities=8% Similarity=0.040 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC--CcceEecCC--CcHHHHHHHhcCCCeeE
Q 019272 101 GDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEG--KIKYIGLSE--ASASTIRRAHAVHPITA 176 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvs~--~~~~~l~~~~~~~~~~~ 176 (343)
.+++...+-+++.+++ .+++++-.|-+.. -++.+.+|.+.- .+.-.|=-. .++..++++++....++
T Consensus 262 ~s~~eai~~~~~lle~-----~~i~~iEdPl~~~----D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~ 332 (425)
T TIGR01060 262 LTSEEMIEYYKELVEK-----YPIVSIEDGLSEE----DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANS 332 (425)
T ss_pred cCHHHHHHHHHHHHhc-----CCcEEEEcCCCcc----cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCE
Confidence 3455544444444444 3667777765433 366666676654 554444332 25889999988888888
Q ss_pred eccccccccc-chhhhhHHHHHHhCCeEEe
Q 019272 177 VQLEWSLWTR-DAEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 177 ~q~~~~~~~~-~~~~~ll~~~~~~gi~v~a 205 (343)
+|+..+-+-- ..-.++...|+++|+.++.
T Consensus 333 v~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 333 ILIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred EEecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 8887765432 1235788999999998554
No 236
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=24.15 E-value=6.3e+02 Score=24.12 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=38.4
Q ss_pred CccccccccCCC----CCCCC-CCHHHHHHHHHHHHHcCCCeEeCcC----CCCCCchH-----HHHHHHhhc
Q 019272 18 SAQGLGCMGMSA----FYGPP-KPESDMIALIHHAIDNGITFLDTSD----VYGPHTNE-----ILLGKALKG 76 (343)
Q Consensus 18 s~lglG~~~~~~----~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~----~Yg~g~sE-----~~lG~al~~ 76 (343)
.+.+||.|.+|. .||.. .+..+..+.++.+-+.|+..|.-.. -|+.-.+| ..+.+++++
T Consensus 7 ~~f~~~~w~~~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~ 79 (382)
T TIGR02631 7 DRFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDE 79 (382)
T ss_pred CceEEEeeccCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHH
Confidence 367899888862 25544 3445677889999999999998652 24432222 356777765
No 237
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=23.99 E-value=2.9e+02 Score=26.31 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=15.3
Q ss_pred hhhhHHHHHHhCCeEEecc
Q 019272 189 EAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 189 ~~~ll~~~~~~gi~v~a~~ 207 (343)
-+.+++.|+++||.|+.-+
T Consensus 60 L~~~L~~~~~~gIkvI~Na 78 (362)
T PF07287_consen 60 LRPLLPAAAEKGIKVITNA 78 (362)
T ss_pred HHHHHHHHHhCCCCEEEeC
Confidence 3578899999999998763
No 238
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=23.98 E-value=6.2e+02 Score=23.90 Aligned_cols=101 Identities=15% Similarity=0.128 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCC-chHHHHHHHhhcCCCCCE-EEEeecCcccCCCCCCCCCCHHHHHHHHHH
Q 019272 35 KPESDMIALIHHAIDNGITFLDTSDVYGPH-TNEILLGKALKGGYRERV-ELATKFGIINEDGQFLYRGDPAYVRAACEA 112 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g-~sE~~lG~al~~~~R~~~-~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~ 112 (343)
.+.++..+.++.+.+.|++-|=-...-+.- ..-..+.+.++.. ++.+ .+...++ ..+.+.+ +
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~I-k~~~p~i~Iei~----------~lt~e~~-----~ 166 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLA-REYFSSLAIEVQ----------PLNEEEY-----K 166 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHH-HHhCCccccccc----------cCCHHHH-----H
Confidence 378889999999999999866422111111 1224455565542 1111 1111222 2344444 6
Q ss_pred HHHhcCCCcccEEE----------ecCCCCCCCHHHHHHHHHHHHHcCC
Q 019272 113 SLKRLDVDYIDLYY----------QHRIDTKVPIEITIGELKKLVEEGK 151 (343)
Q Consensus 113 SL~rLg~d~iDl~~----------lH~~~~~~~~~~~~~~L~~l~~~G~ 151 (343)
-|+..|++.+-+.+ +|-......+++.+++++.+++.|.
T Consensus 167 ~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~ 215 (366)
T TIGR02351 167 KLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGM 215 (366)
T ss_pred HHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 78888877665432 2222334467888999999999985
No 239
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=23.87 E-value=4.6e+02 Score=22.33 Aligned_cols=69 Identities=26% Similarity=0.346 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCC------CCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYG------PHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAA 109 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg------~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~ 109 (343)
+.++...+.+.|.++|..|+=|+..|. . .-..+.+.++ ..+-|-.-.|.. +.+.+.+-
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~--~v~~~~~~~~----~~v~ik~aGGik----------t~~~~l~~ 192 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVE--DVKLMKEAVG----GRVGVKAAGGIR----------TLEDALAM 192 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHH--HHHHHHHHhC----CCceEEEeCCCC----------CHHHHHHH
Q ss_pred HHHHHHhcCCC
Q 019272 110 CEASLKRLDVD 120 (343)
Q Consensus 110 ~~~SL~rLg~d 120 (343)
++.-..|+|+.
T Consensus 193 ~~~g~~riG~s 203 (203)
T cd00959 193 IEAGATRIGTS 203 (203)
T ss_pred HHhChhhccCC
No 240
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=23.68 E-value=6.3e+02 Score=23.91 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc--CCCCCCchHHHHHHHhhcCCCCCE-EEEeecCcccCCCCCCCCCCHHHHHHHHH
Q 019272 35 KPESDMIALIHHAIDNGITFLDTS--DVYGPHTNEILLGKALKGGYRERV-ELATKFGIINEDGQFLYRGDPAYVRAACE 111 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA--~~Yg~g~sE~~lG~al~~~~R~~~-~i~tK~~~~~~~~~~~~~~s~~~i~~~~~ 111 (343)
.+.++..+.++.+.+.|++.|=-. ..-- ...-..+-+.++.. ++.+ -|..+.++ .+.+.+
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~-~~~~e~l~~~i~~I-k~~~p~i~i~~g~----------lt~e~l----- 166 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEA-KVGVDYIRRALPIA-REYFSSVSIEVQP----------LSEEEY----- 166 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCC-CCCHHHHHHHHHHH-HHhCCCceeccCC----------CCHHHH-----
Confidence 478888888899999999977321 1110 01223344444432 1111 12223332 244443
Q ss_pred HHHHhcCCCcccEEE----------ecCCCCCCCHHHHHHHHHHHHHcCC
Q 019272 112 ASLKRLDVDYIDLYY----------QHRIDTKVPIEITIGELKKLVEEGK 151 (343)
Q Consensus 112 ~SL~rLg~d~iDl~~----------lH~~~~~~~~~~~~~~L~~l~~~G~ 151 (343)
+-|+..|++.+-+.+ +|-......+++.+++++.+++.|.
T Consensus 167 ~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~ 216 (371)
T PRK09240 167 AELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGI 216 (371)
T ss_pred HHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 678888987655433 2211234467899999999999985
No 241
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=23.65 E-value=5.1e+02 Score=22.82 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCC
Q 019272 35 KPESDMIALIHHAIDNGITFLDTSDVYGPH 64 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g 64 (343)
.+.++..++++.|.+.|++-+=..++|-.|
T Consensus 17 ~s~eesl~ml~~A~~qGvt~iVaTsHh~~g 46 (254)
T COG4464 17 KSLEESLAMLREAVRQGVTKIVATSHHLHG 46 (254)
T ss_pred CcHHHHHHHHHHHHHcCceEEeecccccCC
Confidence 378999999999999999987766676544
No 242
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=23.55 E-value=4.3e+02 Score=22.16 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCCCeEeCcCC-CCCCchHHHHHHHhhcCCCCCEEEEeecCcccC-CCCCCCCCCHHHHHHHHHHHH
Q 019272 37 ESDMIALIHHAIDNGITFLDTSDV-YGPHTNEILLGKALKGGYRERVELATKFGIINE-DGQFLYRGDPAYVRAACEASL 114 (343)
Q Consensus 37 ~~~~~~~l~~A~~~Gin~~DTA~~-Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~-~~~~~~~~s~~~i~~~~~~SL 114 (343)
.......++.-+..|..+ +|... |+. +..|+ .+.-++|+|-.+.... ..........+.+...++..+
T Consensus 94 Pa~lK~~iD~v~~~g~~~-~~~~g~~~~-------~~~L~--gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~~~~~ 163 (199)
T PF02525_consen 94 PAQLKGWIDRVFTPGFTF-YTPDGKYPS-------GGLLK--GKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPYLRGIL 163 (199)
T ss_dssp -HHHHHHHHHHSHTTTSE-EETTSTTCG-------EESTT--TSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHhCcCCeee-ecccccccc-------ccccc--cccEEEEEcCCCChHHhcccCCCCCChhhhHHHHHHHH
Confidence 467888888888999988 66543 321 11222 2333344444444221 111112335678888899999
Q ss_pred HhcCCCcccEEEecCCCCCCCHHHHHHHHHHHH
Q 019272 115 KRLDVDYIDLYYQHRIDTKVPIEITIGELKKLV 147 (343)
Q Consensus 115 ~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~ 147 (343)
+-+|.+.++.+.++........+..-++++++.
T Consensus 164 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (199)
T PF02525_consen 164 KFCGIKDVESFSFEGVDNPDREEALEKALERAA 196 (199)
T ss_dssp HHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHH
T ss_pred HhCCCceeeEEEEeCCCCCChHHHHHHHHHHHH
Confidence 999999999999999763222223344444443
No 243
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=23.51 E-value=5.2e+02 Score=25.20 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHhcCCCcccEEEe
Q 019272 102 DPAYVRAACEASLKRLDVDYIDLYYQ 127 (343)
Q Consensus 102 s~~~i~~~~~~SL~rLg~d~iDl~~l 127 (343)
+.+.+.+.++..++ |+.++|.+|.+
T Consensus 216 t~e~~~~tl~~~~~-l~~~~is~y~L 240 (455)
T TIGR00538 216 TKESFAKTLEKVAE-LNPDRLAVFNY 240 (455)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEEecC
Confidence 45555555554333 66666666655
No 244
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=23.29 E-value=3.3e+02 Score=23.51 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCC
Q 019272 104 AYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSE 159 (343)
Q Consensus 104 ~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 159 (343)
..+.+.+++.++.+|. ++.++ .+...+.+...+.++.+..+| +..|=++.
T Consensus 14 ~~~~~g~~~~a~~~g~---~~~~~--~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~ 63 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGY---EVEIV--FDAQNDPEEQIEQIEQAISQG-VDGIIVSP 63 (257)
T ss_dssp HHHHHHHHHHHHHHTC---EEEEE--EESTTTHHHHHHHHHHHHHTT-ESEEEEES
T ss_pred HHHHHHHHHHHHHcCC---EEEEe--CCCCCCHHHHHHHHHHHHHhc-CCEEEecC
Confidence 4567777888888874 33333 333344566677777777776 55554443
No 245
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=23.04 E-value=5.3e+02 Score=22.76 Aligned_cols=85 Identities=21% Similarity=0.154 Sum_probs=52.0
Q ss_pred cCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCC-CchHHHHHHHhhcCCCCCEEEEeecCcccCCC
Q 019272 17 VSAQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYGP-HTNEILLGKALKGGYRERVELATKFGIINEDG 95 (343)
Q Consensus 17 vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~ 95 (343)
+-++.+-|.-+ ++++...+.+.+.+.|..|+=|+..+.. |...+-+ +.+++.-..++= -|..- +
T Consensus 127 ~lKVIlEt~~L--------t~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv-~lM~~~vg~~vg--vKaSG----G 191 (228)
T COG0274 127 VLKVILETGLL--------TDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDV-KLMKETVGGRVG--VKASG----G 191 (228)
T ss_pred eEEEEEecccc--------CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHH-HHHHHHhccCce--eeccC----C
Confidence 33455555444 5677799999999999999999996654 3332222 233331222222 22211 0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCC
Q 019272 96 QFLYRGDPAYVRAACEASLKRLDVD 120 (343)
Q Consensus 96 ~~~~~~s~~~i~~~~~~SL~rLg~d 120 (343)
=.+.+....-++.-.-|+|+.
T Consensus 192 ----Irt~eda~~~i~aga~RiGtS 212 (228)
T COG0274 192 ----IRTAEDAKAMIEAGATRIGTS 212 (228)
T ss_pred ----cCCHHHHHHHHHHhHHHhccc
Confidence 126788888999999999875
No 246
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=23.01 E-value=6e+02 Score=23.42 Aligned_cols=85 Identities=8% Similarity=0.017 Sum_probs=59.3
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHHcCCc-ceEecCCCcHHHHHHHhcCCCeeEecccccccccchhhhhHHHHHHhC
Q 019272 122 IDLYYQHRIDTKVPIEITIGELKKLVEEGKI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWTRDAEAEIVPTCRELG 200 (343)
Q Consensus 122 iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ll~~~~~~g 200 (343)
.++.++-.|-+.. -++.+.+|.+.-.+ -..|=|-++...+..+++....+++|+..+..-. -.++++.|+.+|
T Consensus 192 ~~i~~iEqP~~~~----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG--i~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPPD----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS--PSRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCcc----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC--HHHHHHHHHHhC
Confidence 4666777765433 35666667665433 3667777888899998888778888887766543 246788999999
Q ss_pred CeEEecccCccc
Q 019272 201 IGIVAYSPLGRG 212 (343)
Q Consensus 201 i~v~a~~pl~~G 212 (343)
|.++..+.+..|
T Consensus 266 i~~~~~~~~es~ 277 (320)
T PRK02714 266 LDAVFSSVFETA 277 (320)
T ss_pred CCEEEEechhhH
Confidence 999987655443
No 247
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=22.86 E-value=5.6e+02 Score=23.04 Aligned_cols=143 Identities=16% Similarity=0.124 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHH--cCCCeEeCcCCCCCCchHHHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHH
Q 019272 34 PKPESDMIALIHHAID--NGITFLDTSDVYGPHTNEILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACE 111 (343)
Q Consensus 34 ~~~~~~~~~~l~~A~~--~Gin~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~ 111 (343)
..++++..++++.|.+ .|+.-+=..+.|= ....+.|+......+-|+|=++.+.+ ..+.+.-...++
T Consensus 22 ~~T~~~I~~lc~eA~~~~~~faaVcV~P~~v-----~~a~~~L~~~~~~~vkv~tVigFP~G------~~~t~~K~~Ea~ 90 (257)
T PRK05283 22 DDTDEKVIALCHQAKTPVGNTAAICIYPRFI-----PIARKTLREQGTPEIRIATVTNFPHG------NDDIDIALAETR 90 (257)
T ss_pred CCCHHHHHHHHHHHHhcCCCeeEEEECHHHH-----HHHHHHhcccCCCCCeEEEEecCCCC------CCcHHHHHHHHH
Confidence 3478999999999999 5777666655542 23344454211115888888887643 234555666777
Q ss_pred HHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEecccccccccch-hh
Q 019272 112 ASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWTRDA-EA 190 (343)
Q Consensus 112 ~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~ 190 (343)
..++. |.|-||++.=-..-...+++.+.+.+.+.++. +....+.-+.++-.++.... -.
T Consensus 91 ~Ai~~-GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~-------------------~~~~~~lKVIlEt~~L~~ee~i~ 150 (257)
T PRK05283 91 AAIAY-GADEVDVVFPYRALMAGNEQVGFELVKACKEA-------------------CAANVLLKVIIETGELKDEALIR 150 (257)
T ss_pred HHHHc-CCCEEeeeccHHHHhCCcHHHHHHHHHHHHHH-------------------hCCCceEEEEEeccccCCHHHHH
Confidence 77774 99999997643333333455555555555542 11111223445555555431 12
Q ss_pred hhHHHHHHhCCeEEecc
Q 019272 191 EIVPTCRELGIGIVAYS 207 (343)
Q Consensus 191 ~ll~~~~~~gi~v~a~~ 207 (343)
.....|.+.|..++--|
T Consensus 151 ~a~~~a~~aGADFVKTS 167 (257)
T PRK05283 151 KASEIAIKAGADFIKTS 167 (257)
T ss_pred HHHHHHHHhCCCEEEcC
Confidence 45556677777776544
No 248
>PLN02428 lipoic acid synthase
Probab=22.76 E-value=6.5e+02 Score=23.77 Aligned_cols=157 Identities=15% Similarity=0.225 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcC----CCCCCchHHHHHHHhhcCCC--CCEEEEeecCcccCCCCCCCCCCHHHHHHH
Q 019272 36 PESDMIALIHHAIDNGITFLDTSD----VYGPHTNEILLGKALKGGYR--ERVELATKFGIINEDGQFLYRGDPAYVRAA 109 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~----~Yg~g~sE~~lG~al~~~~R--~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~ 109 (343)
+.++..++.+.+.+.|++++=-.. .|-++..+ .+.+.++...+ ..+.|.. +.+. ...+ ..
T Consensus 131 d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~-~~~elir~Ir~~~P~i~Ie~-L~pd-------f~~d-----~e 196 (349)
T PLN02428 131 DPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSG-HFAETVRRLKQLKPEILVEA-LVPD-------FRGD-----LG 196 (349)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHH-HHHHHHHHHHHhCCCcEEEE-eCcc-------ccCC-----HH
Confidence 455666778888888988664321 23333343 33344433211 1232222 1111 0111 22
Q ss_pred HHHHHHhcCCCcccEEEecCCCC-----------CCCHHHHHHHHHHHHHc--CCcc----eEecCCCcHHHHHHHhc--
Q 019272 110 CEASLKRLDVDYIDLYYQHRIDT-----------KVPIEITIGELKKLVEE--GKIK----YIGLSEASASTIRRAHA-- 170 (343)
Q Consensus 110 ~~~SL~rLg~d~iDl~~lH~~~~-----------~~~~~~~~~~L~~l~~~--G~ir----~iGvs~~~~~~l~~~~~-- 170 (343)
+-+.|+.-| +|. +-|+++. ....++.++.|+.+++. |..- -+|+ .-+.+++.+.+.
T Consensus 197 lL~~L~eAG---~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~L 271 (349)
T PLN02428 197 AVETVATSG---LDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDL 271 (349)
T ss_pred HHHHHHHcC---CCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHH
Confidence 223333444 566 3476653 23467889999999988 7653 2466 344454444333
Q ss_pred -CCCeeEecc-cc---cc--------cccchhhhhHHHHHHhCCeEEecccCcc
Q 019272 171 -VHPITAVQL-EW---SL--------WTRDAEAEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 171 -~~~~~~~q~-~~---~~--------~~~~~~~~ll~~~~~~gi~v~a~~pl~~ 211 (343)
...++.+.+ +| +. +.+.....+-+++.+.|...++-+||-.
T Consensus 272 relgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 272 RAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 244444433 33 11 1111124677888899999999999865
No 249
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=22.61 E-value=5.6e+02 Score=22.94 Aligned_cols=100 Identities=17% Similarity=0.179 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCcHHHHHHHhcCCCeeEec
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGK-IKYIGLSEASASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q 178 (343)
.++.+.. ..+-+.|.++|++.|.+-. |... .+.+++.+.+.+.++ .+-+++...+.+.++.+.+.. ++.+-
T Consensus 18 ~~s~~~k-~~i~~~L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g-~~~i~ 89 (262)
T cd07948 18 FFDTEDK-IEIAKALDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETG-VDGVD 89 (262)
T ss_pred CCCHHHH-HHHHHHHHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcC-cCEEE
Confidence 4566654 4555569999988888763 4332 334455555554443 334555566777888887762 22332
Q ss_pred ccccc--------cccchh------hhhHHHHHHhCCeEEecc
Q 019272 179 LEWSL--------WTRDAE------AEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 179 ~~~~~--------~~~~~~------~~ll~~~~~~gi~v~a~~ 207 (343)
+.++. +.+..+ .+.+.+++++|+.|....
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 22211 111111 356788899998766544
No 250
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=22.58 E-value=4.2e+02 Score=22.36 Aligned_cols=109 Identities=19% Similarity=0.170 Sum_probs=49.8
Q ss_pred CcccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHhh---c-CCCCCEEEEeecC
Q 019272 14 GLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYGPHTNEILLGKALK---G-GYRERVELATKFG 89 (343)
Q Consensus 14 g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~---~-~~R~~~~i~tK~~ 89 (343)
|..+-.|||++... -+.+..+.|..- +.-+=.+|+.++...-.=++.+-.+++ + .+.--+++++-+.
T Consensus 33 ~~~~iNLGfsG~~~--------le~~~a~~ia~~-~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~ 103 (178)
T PF14606_consen 33 GLDVINLGFSGNGK--------LEPEVADLIAEI-DADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIP 103 (178)
T ss_dssp T-EEEEEE-TCCCS----------HHHHHHHHHS---SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE---
T ss_pred CCCeEeeeecCccc--------cCHHHHHHHhcC-CCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 45555666665322 234444555433 555556666555433222333444443 2 3566778888776
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHhcC-CCcccEEEecCCC
Q 019272 90 IINEDGQFLYRGDPAYVRAACEASLKRLD-VDYIDLYYQHRID 131 (343)
Q Consensus 90 ~~~~~~~~~~~~s~~~i~~~~~~SL~rLg-~d~iDl~~lH~~~ 131 (343)
.....-........+..++.+++..++|. -..=+|++++..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 104 YPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp -TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HHH
T ss_pred ccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCchh
Confidence 54321111123356777788888888882 2356888888754
No 251
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=22.51 E-value=2.1e+02 Score=26.34 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC----------cCCCCCC--chHHHHHHHhhcC-CCCCEEEEeecCcccCCCCCCCCCC
Q 019272 36 PESDMIALIHHAIDNGITFLDT----------SDVYGPH--TNEILLGKALKGG-YRERVELATKFGIINEDGQFLYRGD 102 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DT----------A~~Yg~g--~sE~~lG~al~~~-~R~~~~i~tK~~~~~~~~~~~~~~s 102 (343)
+.+.+.+..+.+.+.|+..||- ...||.+ ..-..+.+.++.. ..-++-|+.|+-..+ +.+
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~-------~~~ 136 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW-------DDS 136 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC-------T--
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc-------ccc
Confidence 5677777777777889999994 2345543 2445556655442 112356666765432 112
Q ss_pred HHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCH--HHHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCeeEecc
Q 019272 103 PAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPI--EITIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 103 ~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~--~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 179 (343)
.+.. ..+-+.|+..| +|.+.||.-...... ..-|+.+.++++.=.|--||=.+ ++.+++++.++....+.+++
T Consensus 137 ~~~~-~~~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 137 PEET-IEFARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp CHHH-HHHHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEE
T ss_pred hhHH-HHHHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEE
Confidence 3333 33555777777 799999986444332 34577777777765555554443 45566666665544444443
No 252
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=22.48 E-value=1.6e+02 Score=20.09 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=15.1
Q ss_pred HHHHHHHHhCCCHHHHH
Q 019272 250 RVNEIAAKKGCTPSQLA 266 (343)
Q Consensus 250 ~l~~ia~~~~~s~~q~a 266 (343)
.+++||+++|++..+|-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68999999999998875
No 253
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.42 E-value=2.2e+02 Score=28.61 Aligned_cols=59 Identities=24% Similarity=0.211 Sum_probs=42.4
Q ss_pred CchHHHHHHHhhc-CCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhc-CCCcccEEEecCCCCCCCHH
Q 019272 64 HTNEILLGKALKG-GYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRL-DVDYIDLYYQHRIDTKVPIE 137 (343)
Q Consensus 64 g~sE~~lG~al~~-~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rL-g~d~iDl~~lH~~~~~~~~~ 137 (343)
|-|-+.++++|-. .+|+++.|+--.. .+ ++-+-.||+|| |+-|+.=+.+-|-.+..+.+
T Consensus 632 gGsGkEF~~aLGGN~pREQFTvVmLTY------------ER---e~VLm~sLeRL~gLPYLnKvvVVWNspk~P~d 692 (907)
T KOG2264|consen 632 GGSGKEFSKALGGNRPREQFTVVMLTY------------ER---EAVLMGSLERLHGLPYLNKVVVVWNSPKDPPD 692 (907)
T ss_pred CCchHHHHHHhcCCCccceEEEEEEEe------------hH---HHHHHHHHHHhhCCcccceEEEEeCCCCCChh
Confidence 4477888999966 4888887765432 22 35578899999 68899988888876655544
No 254
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=21.97 E-value=7.2e+02 Score=23.96 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=41.4
Q ss_pred ccCccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCC----chHHHHHHHhhc-----CCCCCEEEEe
Q 019272 16 EVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIDNGITFLDTSDVYGPH----TNEILLGKALKG-----GYRERVELAT 86 (343)
Q Consensus 16 ~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g----~sE~~lG~al~~-----~~R~~~~i~t 86 (343)
.|=+++.|==+ .|+.-.+..++.+++..|++.|- ...|+.. .+-+.+.+.+.+ ...+++++++
T Consensus 62 ~iipl~~GDPs---v~~~~~ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~lts 133 (447)
T KOG0259|consen 62 PILPLGHGDPS---VYPCFRTSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTS 133 (447)
T ss_pred eeccCCCCCCC---ccccccCCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEec
Confidence 45556665322 23333356778889999999883 4567653 366677777643 2678888877
Q ss_pred ecC
Q 019272 87 KFG 89 (343)
Q Consensus 87 K~~ 89 (343)
-+.
T Consensus 134 GC~ 136 (447)
T KOG0259|consen 134 GCS 136 (447)
T ss_pred cch
Confidence 653
No 255
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=21.94 E-value=5.5e+02 Score=22.57 Aligned_cols=151 Identities=16% Similarity=0.178 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCCeEeCcCCCCC---CchHHHHHHHhhc---C--CCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHH
Q 019272 40 MIALIHHAIDNGITFLDTSDVYGP---HTNEILLGKALKG---G--YRERVELATKFGIINEDGQFLYRGDPAYVRAACE 111 (343)
Q Consensus 40 ~~~~l~~A~~~Gin~~DTA~~Yg~---g~sE~~lG~al~~---~--~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~ 111 (343)
..++++.|.+.|+..|=+.+|.-. +..+..+-...+. . ..+ +-|.+=+-....+ ..+ ..-..
T Consensus 18 ~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~i~~G~E~~~~~-----~~~----~d~~~ 87 (237)
T COG1387 18 PEEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYD-IKILIGIEVDILP-----DGS----LDFLD 87 (237)
T ss_pred HHHHHHHHHHcCCeEEEEeccccccccCCCHHHHHHHHHHHHHHHHhcC-ceEEEeEEEEecC-----CCC----cccch
Confidence 445699999999999988887655 4455444444332 1 222 2222222111111 111 11122
Q ss_pred HHHHhcCCCcccEEEecCCC-CCCCHHHHHHHHHHHHHcCCcceEecCCCc-------------HHHHHHHhcCCCeeEe
Q 019272 112 ASLKRLDVDYIDLYYQHRID-TKVPIEITIGELKKLVEEGKIKYIGLSEAS-------------ASTIRRAHAVHPITAV 177 (343)
Q Consensus 112 ~SL~rLg~d~iDl~~lH~~~-~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~-------------~~~l~~~~~~~~~~~~ 177 (343)
.-+..| |+ =+..+|.+. .........+.+..+...+.|.-||=-+.. ...+-+++..... ++
T Consensus 88 ~~~~~l--D~-vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-al 163 (237)
T COG1387 88 EILKEL--DY-VIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNGK-AL 163 (237)
T ss_pred hhHhhc--CE-EEEEeccCCccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhCc-EE
Confidence 223333 33 356678863 233455678888889999998888765541 1222222222221 23
Q ss_pred cccccccccchhhhhHHHHHHhCCeEE
Q 019272 178 QLEWSLWTRDAEAEIVPTCRELGIGIV 204 (343)
Q Consensus 178 q~~~~~~~~~~~~~ll~~~~~~gi~v~ 204 (343)
.+.-+.-...+...++..|++.|+.+.
T Consensus 164 eins~~~~~~~~~~~~~~~~e~G~~~~ 190 (237)
T COG1387 164 EINSRPGRLDPNSEILRLARELGVKLA 190 (237)
T ss_pred eecCCcCccCchHHHHHHHHHhCCeEE
Confidence 333332222234678999999987654
No 256
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=21.93 E-value=4.7e+02 Score=25.00 Aligned_cols=61 Identities=11% Similarity=-0.006 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecC-CCC----------C-C-CHH---HHH-HHHHHHHHcCCcceEecCCCcH
Q 019272 100 RGDPAYVRAACEASLKRLDVDYIDLYYQHR-IDT----------K-V-PIE---ITI-GELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~-~~~----------~-~-~~~---~~~-~~L~~l~~~G~ir~iGvs~~~~ 162 (343)
.-+.+.+++.++..++ |+.++|.+|.+.- |.. . . +.+ +.+ .+.+.|.+.|.. ++++|||..
T Consensus 173 gqt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 250 (390)
T PRK06582 173 GQTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYF-RYEISNYAK 250 (390)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc-eeeceeeeC
Confidence 4577888898988886 8999999998863 311 0 0 111 122 234445666764 478888764
No 257
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=21.76 E-value=2.5e+02 Score=24.27 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCeeEeccc
Q 019272 102 DPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQLE 180 (343)
Q Consensus 102 s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~ 180 (343)
+++.. ..+-+.|-.-|+..+-+=+ -. ...++.+++++++..=-.||..+ .+.++++.+++..- +++
T Consensus 18 ~~e~a-~~~~~al~~~Gi~~iEit~---~t-----~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fi--- 84 (204)
T TIGR01182 18 DVDDA-LPLAKALIEGGLRVLEVTL---RT-----PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFI--- 84 (204)
T ss_pred CHHHH-HHHHHHHHHcCCCEEEEeC---CC-----ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEE---
Confidence 44443 4455566777765555432 11 34566666666654335688877 57888888887632 222
Q ss_pred ccccccchhhhhHHHHHHhCCeEEe
Q 019272 181 WSLWTRDAEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 181 ~~~~~~~~~~~ll~~~~~~gi~v~a 205 (343)
.++ ....+++++|+++||.++.
T Consensus 85 vsP---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 VSP---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred ECC---CCCHHHHHHHHHcCCcEEC
Confidence 122 2246899999999998876
No 258
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.74 E-value=7.1e+02 Score=23.77 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=60.1
Q ss_pred CcccEEEecCCCCC-----------CCHHHHHHHHHHHHH-cCC---cceEecC--CCcHHH---HHHHhcCC---CeeE
Q 019272 120 DYIDLYYQHRIDTK-----------VPIEITIGELKKLVE-EGK---IKYIGLS--EASAST---IRRAHAVH---PITA 176 (343)
Q Consensus 120 d~iDl~~lH~~~~~-----------~~~~~~~~~L~~l~~-~G~---ir~iGvs--~~~~~~---l~~~~~~~---~~~~ 176 (343)
++-=.+-||.+++. .+++++++++.+..+ .|+ |+++=+. |.+.++ +.+++... +..+
T Consensus 237 ~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~V 316 (373)
T PRK14459 237 PVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHV 316 (373)
T ss_pred CeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEE
Confidence 33345778998652 346889999888764 464 4455444 334444 44444444 5678
Q ss_pred ecccccccccc----h----hhhhHHHHHHhCCeEEecccCcc
Q 019272 177 VQLEWSLWTRD----A----EAEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 177 ~q~~~~~~~~~----~----~~~ll~~~~~~gi~v~a~~pl~~ 211 (343)
+-++||++... + -.++.+..+++||.+......+.
T Consensus 317 NLIpyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 317 NLIPLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred EEEccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 89999986531 1 13578888999999999887764
No 259
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=21.65 E-value=6.4e+02 Score=23.19 Aligned_cols=167 Identities=12% Similarity=0.111 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCC---CchHH----HHHHHhhc-----------CCCCCEEEEeecCcccC--CC
Q 019272 36 PESDMIALIHHAIDNGITFLDTSDVYGP---HTNEI----LLGKALKG-----------GYRERVELATKFGIINE--DG 95 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~---g~sE~----~lG~al~~-----------~~R~~~~i~tK~~~~~~--~~ 95 (343)
.++..+++-...+++|-+.++|+. |.. |-+|+ .+.+..+. ...+...|+--+|+... .+
T Consensus 41 ~peiv~~vh~df~~aGa~ii~T~T-Yqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~ 119 (300)
T COG2040 41 EPEIVRNVHADFLRAGADIITTAT-YQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALAD 119 (300)
T ss_pred CHHHHHHHHHHHHHhcCcEEeehh-hhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcCh
Confidence 356677777788899999999974 421 11332 22222211 13455556777776532 11
Q ss_pred CC--CCCCCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCc---------HHH
Q 019272 96 QF--LYRGDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEAS---------AST 164 (343)
Q Consensus 96 ~~--~~~~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~---------~~~ 164 (343)
.+ ....+.+.+.+=.+.-++.|.-.-+|++.+--.......+.+++.+++. ++=-.|+++-.+ ...
T Consensus 120 Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~---s~p~wISfT~~d~~~lr~Gt~l~e 196 (300)
T COG2040 120 EYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEF---SKPAWISFTLNDDTRLRDGTPLSE 196 (300)
T ss_pred hhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHHHHHHHHHHHHh---CCceEEEEEeCCCCccCCCccHHH
Confidence 11 1233556565666777777776779999988765554455566666666 888888887642 122
Q ss_pred HHHH-hcCCCeeEecccccccccchhhhhHHHH--HHhCCeEEeccc
Q 019272 165 IRRA-HAVHPITAVQLEWSLWTRDAEAEIVPTC--RELGIGIVAYSP 208 (343)
Q Consensus 165 l~~~-~~~~~~~~~q~~~~~~~~~~~~~ll~~~--~~~gi~v~a~~p 208 (343)
+... .+...+..+.+.+.-.+. -..+++.. ...|+++++|--
T Consensus 197 aa~~~~~~~~iaa~gvNC~~p~~--~~a~i~~l~~~~~~~piivYPN 241 (300)
T COG2040 197 AAAILAGLPNIAALGVNCCHPDH--IPAAIEELSKLLTGKPIIVYPN 241 (300)
T ss_pred HHHHHhcCcchhheeeccCChhh--hHHHHHHHHhcCCCCceEEcCC
Confidence 2222 223456666665555444 34566666 344788888865
No 260
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.42 E-value=7e+02 Score=23.61 Aligned_cols=86 Identities=12% Similarity=0.145 Sum_probs=54.9
Q ss_pred EecCCCCC-----------CCHHHHHHHHHHHH-HcCC---cceEecC--CCcHHHHHHHh---cCCCeeEecccccccc
Q 019272 126 YQHRIDTK-----------VPIEITIGELKKLV-EEGK---IKYIGLS--EASASTIRRAH---AVHPITAVQLEWSLWT 185 (343)
Q Consensus 126 ~lH~~~~~-----------~~~~~~~~~L~~l~-~~G~---ir~iGvs--~~~~~~l~~~~---~~~~~~~~q~~~~~~~ 185 (343)
-||.+++. -+++++++++..+. +.|+ |+++=+. |.+.++++++. ...+..++-++||.+.
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~ 304 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHE 304 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCC
Confidence 48988653 24567888887655 4454 5566444 34556655544 3345678888999865
Q ss_pred cc----hh----hhhHHHHHHhCCeEEecccCcc
Q 019272 186 RD----AE----AEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 186 ~~----~~----~~ll~~~~~~gi~v~a~~pl~~ 211 (343)
.. +. ..+.+..+++||.+......+.
T Consensus 305 ~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~ 338 (356)
T PRK14462 305 GSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGL 338 (356)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 31 11 2456677788999988877654
No 261
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=21.37 E-value=1.2e+03 Score=26.30 Aligned_cols=105 Identities=14% Similarity=0.082 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhcCCCcccEEEecCCCC-CCCHHHHHHHHHHHHHcC-Cc--ceEecCCCcHHHHHHHhcCCCeeEec
Q 019272 103 PAYVRAACEASLKRLDVDYIDLYYQHRIDT-KVPIEITIGELKKLVEEG-KI--KYIGLSEASASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 103 ~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~-~~~~~~~~~~L~~l~~~G-~i--r~iGvs~~~~~~l~~~~~~~~~~~~q 178 (343)
.+.+.+..++. ..-|-+.||+- ++. ..+.++.+..+..+.+.- .+ --|-+-++.++.++.+++..+=..+-
T Consensus 383 ~~~al~~A~~q-ve~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~G~~II 457 (1229)
T PRK09490 383 YDEALDVARQQ-VENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQGKGIV 457 (1229)
T ss_pred HHHHHHHHHHH-HHCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcCCCCEE
Confidence 34443333333 35688999984 332 223344444444433321 11 23677788899999999873222233
Q ss_pred ccccccccc-hhhhhHHHHHHhCCeEEecccCccc
Q 019272 179 LEWSLWTRD-AEAEIVPTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 179 ~~~~~~~~~-~~~~ll~~~~~~gi~v~a~~pl~~G 212 (343)
+..|..... ...++++.|+++|..|+++.--..|
T Consensus 458 NSIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G 492 (1229)
T PRK09490 458 NSISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQG 492 (1229)
T ss_pred EeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCC
Confidence 444554321 1236899999999999998643333
No 262
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=21.35 E-value=3.8e+02 Score=20.51 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=42.0
Q ss_pred CCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCC---CcccEEEecCCCCC-CCHHHHHHHHHHHHHc
Q 019272 78 YRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDV---DYIDLYYQHRIDTK-VPIEITIGELKKLVEE 149 (343)
Q Consensus 78 ~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~---d~iDl~~lH~~~~~-~~~~~~~~~L~~l~~~ 149 (343)
+|=-+.|+-|+|. ...+..+++.+.+.++.+.. ...|++++-.+... .+..++.+.|..|.+.
T Consensus 38 ~R~GisVsKKvgk---------AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGN---------AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCc---------hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 3444566666653 23567788888888776532 35799999887543 4667777777776655
No 263
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=21.34 E-value=4e+02 Score=20.71 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=40.0
Q ss_pred CCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcC--CCcccEEEecCCCCC-CCHHHHHHHHHHHHHc
Q 019272 78 YRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLD--VDYIDLYYQHRIDTK-VPIEITIGELKKLVEE 149 (343)
Q Consensus 78 ~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg--~d~iDl~~lH~~~~~-~~~~~~~~~L~~l~~~ 149 (343)
+|=-+.|+-|++.. ...+..+++.+.+..+... +...|++++..+... .+..++.+.|..|.+.
T Consensus 44 ~R~G~~VsKK~~~~--------AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 44 PRLGLVVGKKTAKR--------AVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred ceEEEEEecccCcc--------hhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 34445666664421 2356778888888876554 235699999988543 4566666666666544
No 264
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=21.28 E-value=1.8e+02 Score=24.25 Aligned_cols=64 Identities=22% Similarity=0.158 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCCc----ccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcC
Q 019272 106 VRAACEASLKRLDVDY----IDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAV 171 (343)
Q Consensus 106 i~~~~~~SL~rLg~d~----iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 171 (343)
.+..++..++++|++. ++.+.-.+ .......++.+.|+.|++.| ++-.-+||.+...++..++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 3456667777777641 11111111 11223457788899999888 45556788777766665554
No 265
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=21.11 E-value=6.2e+02 Score=22.85 Aligned_cols=52 Identities=12% Similarity=-0.045 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHhc------CCCcccEEEecCCCCCC-CHHHHHHHHHHHHHcCC
Q 019272 100 RGDPAYVRAACEASLKRL------DVDYIDLYYQHRIDTKV-PIEITIGELKKLVEEGK 151 (343)
Q Consensus 100 ~~s~~~i~~~~~~SL~rL------g~d~iDl~~lH~~~~~~-~~~~~~~~L~~l~~~G~ 151 (343)
..+.+...+-.+-..+-+ +++.|=|=.+..+.... +..+++++-+.|+++|-
T Consensus 80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF 138 (267)
T CHL00162 80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGF 138 (267)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCC
Confidence 446666666665556655 67777766666655443 35689999999999986
No 266
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=21.08 E-value=81 Score=26.94 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=42.0
Q ss_pred HHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCeeEecccccc
Q 019272 112 ASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQLEWSL 183 (343)
Q Consensus 112 ~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~ 183 (343)
..+..+|.||+=+.+ ++..... -..+.+.++.+.-.-+.+||.. .+.+.+.+.+....++++|++-+-
T Consensus 13 ~~~~~~g~d~~Gfi~--~~~S~R~--v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 13 RLAAELGADYLGFIF--YPKSPRY--VSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHHcCCCEEeeec--CCCCCCc--cCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 345678999988864 3432221 2244455555554444888864 577888888888999999986543
No 267
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=21.08 E-value=6.1e+02 Score=23.17 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=33.0
Q ss_pred HHHHHHHHhCC------CHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHH
Q 019272 250 RVNEIAAKKGC------TPSQLALAWVHHQGDDVCPIPGTTKIENLNQNI 293 (343)
Q Consensus 250 ~l~~ia~~~~~------s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl 293 (343)
+|.++|.+.+. ++.++-..|+..... ..+..|+|+++.+-+.+
T Consensus 226 rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~-VGitaGASTP~~li~eV 274 (281)
T PRK12360 226 KLVKICEKNCPNTFHIETADELDLEMLKDYKI-IGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHCCCEEEECChHHCCHHHhCCCCE-EEEEccCCCCHHHHHHH
Confidence 78888888874 788888899976643 45679999999775543
No 268
>PTZ00081 enolase; Provisional
Probab=21.07 E-value=7.9e+02 Score=24.04 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcC--CcceEecC--CCcHHHHHHHhcCCCeeE
Q 019272 101 GDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEG--KIKYIGLS--EASASTIRRAHAVHPITA 176 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvs--~~~~~~l~~~~~~~~~~~ 176 (343)
.+++.+.+-+.+.++.+ ++++|-.|-.. +-|+.+.+|.++- .+.-+|=- ..+++.+++.++....++
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~~----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFDQ----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCc----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 46676666666666665 46667766543 3356666666553 55545432 356889999999888888
Q ss_pred eccccccccc-chhhhhHHHHHHhCCeEEe
Q 019272 177 VQLEWSLWTR-DAEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 177 ~q~~~~~~~~-~~~~~ll~~~~~~gi~v~a 205 (343)
+|+..|-+-- ....+....|+++|+.++.
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 9888775432 2235789999999998776
No 269
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=21.04 E-value=6.5e+02 Score=23.05 Aligned_cols=182 Identities=15% Similarity=0.119 Sum_probs=89.8
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHHHHH-cCCCeEeCcCCCCCC---chHHHHHHHhhcC--CCCCEEEEeecCcccC
Q 019272 20 QGLGCMGMSAFYGPPKPESDMIALIHHAID-NGITFLDTSDVYGPH---TNEILLGKALKGG--YRERVELATKFGIINE 93 (343)
Q Consensus 20 lglG~~~~~~~~~~~~~~~~~~~~l~~A~~-~Gin~~DTA~~Yg~g---~sE~~lG~al~~~--~R~~~~i~tK~~~~~~ 93 (343)
|.||++.-+..-....+.++..+.+...++ .|++.||----|+.- .+-..+-++|+.. .+..+.|+.-+....
T Consensus 72 iS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p- 150 (294)
T cd06543 72 VSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLP- 150 (294)
T ss_pred EEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCC-
Confidence 456665532111122245555555555554 599999975545421 1224555666542 233566665554321
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcC--CCcccEEEecCCCC--CCC-HHHHHHHHHHHHHcCCcceEecCCCcHHHHHHH
Q 019272 94 DGQFLYRGDPAYVRAACEASLKRLD--VDYIDLYYQHRIDT--KVP-IEITIGELKKLVEEGKIKYIGLSEASASTIRRA 168 (343)
Q Consensus 94 ~~~~~~~~s~~~i~~~~~~SL~rLg--~d~iDl~~lH~~~~--~~~-~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~ 168 (343)
..+.++.+ .+-+..+.-| +|+|.++-...-.. ..+ ...+..+.+.++.+=+--+=+ ++...+-..
T Consensus 151 -----~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~~~~ 220 (294)
T cd06543 151 -----TGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAELWAM 220 (294)
T ss_pred -----CCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHHHHH
Confidence 12333322 2444444455 46777666644332 122 345666666666652211212 333333333
Q ss_pred hcCCC-eeEecccccccccchhhhhHHHHHHhCCeEEecccCccc
Q 019272 169 HAVHP-ITAVQLEWSLWTRDAEAEIVPTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 169 ~~~~~-~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl~~G 212 (343)
+...| +-.+=..=.++....-..+.++++++||+.++|-.+.+.
T Consensus 221 ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 221 IGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred ccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCC
Confidence 33322 111100000222222368999999999999999888764
No 270
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=21.04 E-value=5.5e+02 Score=22.22 Aligned_cols=26 Identities=8% Similarity=0.028 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHcCCC-eEeCcCCC
Q 019272 36 PESDMIALIHHAIDNGIT-FLDTSDVY 61 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gin-~~DTA~~Y 61 (343)
..+-+.++++.+-+.|+. .+||+-.+
T Consensus 52 q~~fl~~l~~~~k~~gi~~~leTnG~~ 78 (213)
T PRK10076 52 QAEFATRFLQRLRLWGVSCAIETAGDA 78 (213)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 344468899999999986 79998755
No 271
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=21.01 E-value=4.3e+02 Score=25.33 Aligned_cols=73 Identities=11% Similarity=0.064 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcC-CCeeEecccccccccc-hhhhhHHHHHHhCCeEEecccCc
Q 019272 138 ITIGELKKLVEEGKIKYIGLSEASASTIRRAHAV-HPITAVQLEWSLWTRD-AEAEIVPTCRELGIGIVAYSPLG 210 (343)
Q Consensus 138 ~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~-~~~~ll~~~~~~gi~v~a~~pl~ 210 (343)
.++..+..+.+.+.++.+-+...+.+.++++++. .++.++..+-|+..+- .-.++.+.|+++|+.++.=...+
T Consensus 111 ~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a 185 (405)
T PRK08776 111 GSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFL 185 (405)
T ss_pred HHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCc
Confidence 3444444444444455555544456666665532 3333444444443322 12467778888887777544443
No 272
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=20.93 E-value=1.3e+02 Score=20.89 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhc
Q 019272 247 LFERVNEIAAKKGCTPSQLALAWVHHQ 273 (343)
Q Consensus 247 ~~~~l~~ia~~~~~s~~q~al~~~l~~ 273 (343)
.++.|++||...|+|+++++-..-...
T Consensus 22 FW~~L~eiA~~~g~s~~~li~~id~~r 48 (67)
T PF13467_consen 22 FWDALEEIAAREGLSLNALIAEIDARR 48 (67)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 457899999999999999887775444
No 273
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=20.92 E-value=94 Score=27.64 Aligned_cols=48 Identities=10% Similarity=0.207 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH---HHhcCCCeeeccCCCcHHHHHHHH
Q 019272 245 KKLFERVNEIAAKKGCTPSQLALAW---VHHQGDDVCPIPGTTKIENLNQNI 293 (343)
Q Consensus 245 ~~~~~~l~~ia~~~~~s~~q~al~~---~l~~~~v~~~i~g~~~~~~l~enl 293 (343)
.+++.++..||.-|++++.+++..| ++++..- ..-+...+.+.+++.+
T Consensus 9 ~~vl~kl~slc~~~~ls~edL~~kWeaf~~~~~~~-~~~l~~~~L~~F~~~l 59 (253)
T PF08418_consen 9 PDVLEKLQSLCRLYNLSAEDLFYKWEAFSLNMQLD-DTKLTLDNLDQFKQYL 59 (253)
T ss_dssp HHHHHHHHTHHHHST--HHHHHHHHTTHHHHTT-S-C----TTTTTGGGTTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCC-cCcCCHHHHHHHHHHH
Confidence 4678899999999999999999987 3444332 1124445555555444
No 274
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=20.89 E-value=4.1e+02 Score=20.75 Aligned_cols=63 Identities=5% Similarity=-0.122 Sum_probs=43.1
Q ss_pred CCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCC---CcccEEEecCCCC-CCCHHHHHHHHHHHHHc
Q 019272 78 YRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDV---DYIDLYYQHRIDT-KVPIEITIGELKKLVEE 149 (343)
Q Consensus 78 ~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~---d~iDl~~lH~~~~-~~~~~~~~~~L~~l~~~ 149 (343)
+|=-+.|+-|+|. -.-+..+++.+.++.+.+.. .-.|++++-.+.. ..+..++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~---------AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGN---------AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccc---------hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 4555677778774 23567788888888777654 2469999987754 34677777777776654
No 275
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=20.79 E-value=1.7e+02 Score=26.44 Aligned_cols=54 Identities=17% Similarity=0.075 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcH
Q 019272 102 DPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 102 s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~ 162 (343)
+-+-+.+..++.|-+.+ |..=+.=+..- .|....-..|++|++.| +-||.||+.
T Consensus 64 aN~iv~em~~eiLp~v~-~tPViaGv~at---DP~~~~~~fl~~lk~~G---f~GV~NfPT 117 (268)
T PF09370_consen 64 ANEIVMEMAREILPVVK-DTPVIAGVCAT---DPFRDMDRFLDELKELG---FSGVQNFPT 117 (268)
T ss_dssp HHHHHHHHHHHHGGG-S-SS-EEEEE-TT----TT--HHHHHHHHHHHT----SEEEE-S-
T ss_pred HhHHHHHHHHhhhhhcc-CCCEEEEecCc---CCCCcHHHHHHHHHHhC---CceEEECCc
Confidence 44556666677777776 22223333333 34566777888888888 579999874
No 276
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=20.78 E-value=3.3e+02 Score=24.85 Aligned_cols=44 Identities=20% Similarity=0.371 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHH
Q 019272 249 ERVNEIAAKKGC------TPSQLALAWVHHQGDDVCPIPGTTKIENLNQNI 293 (343)
Q Consensus 249 ~~l~~ia~~~~~------s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl 293 (343)
.+|.++|++++. ++.++-..|+-... ...+..|+|+++.+-+.+
T Consensus 225 ~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~-~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 225 RKLAEIAKEHGKPTYHIETADELDPEWLKGVK-KVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHCTTCEEEESSGGG--HHHHTT-S-EEEEEE-TTS-HHHHHHH
T ss_pred HHHHHHHHHhCCCEEEeCCccccCHhHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 378899999875 78899999987765 456678999999876654
No 277
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=20.77 E-value=3.8e+02 Score=27.01 Aligned_cols=73 Identities=21% Similarity=0.149 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEe---cccccccccchhhhhHHHHHHhCCeEEecccC
Q 019272 134 VPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAV---QLEWSLWTRDAEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 134 ~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~---q~~~~~~~~~~~~~ll~~~~~~gi~v~a~~pl 209 (343)
.+.+++.+.+.+.++..+|+.+|+-.+....+..+++...+..+ |.-+++-.. -..++..-..|.-+..-.|+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~---~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGA---IKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCch---hHHHHHHHhcCcEEECCCcH
Confidence 45678899999999999999999999999988888877655444 333333222 23344444455555555554
No 278
>PF13518 HTH_28: Helix-turn-helix domain
Probab=20.52 E-value=1.3e+02 Score=18.92 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 019272 250 RVNEIAAKKGCTPSQLALAWVHH 272 (343)
Q Consensus 250 ~l~~ia~~~~~s~~q~al~~~l~ 272 (343)
.+.++|.++|+|..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 5677888888888775 677643
No 279
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=20.49 E-value=6.8e+02 Score=23.07 Aligned_cols=43 Identities=26% Similarity=0.409 Sum_probs=32.8
Q ss_pred HHHHHHHHhCC------CHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHH
Q 019272 250 RVNEIAAKKGC------TPSQLALAWVHHQGDDVCPIPGTTKIENLNQNI 293 (343)
Q Consensus 250 ~l~~ia~~~~~------s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl 293 (343)
+|.++|++++. +..++-..|+.... ...+..|+|+++.+-+.+
T Consensus 227 kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~eV 275 (298)
T PRK01045 227 RLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHHH
Confidence 78888888874 78999999996554 356679999999765543
No 280
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=20.44 E-value=8.4e+02 Score=24.12 Aligned_cols=125 Identities=10% Similarity=-0.023 Sum_probs=69.7
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEeccccccccc--------------
Q 019272 121 YIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWTR-------------- 186 (343)
Q Consensus 121 ~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~-------------- 186 (343)
..|+++.--|+...-...++..+..+...+.|-.-..|..+...+.+.+......++-.++|+...
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~ 159 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSP 159 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCH
Confidence 468888776655433345677777776777664445555667777666554333344444443221
Q ss_pred chhhhhHHHHHHhCCeEEecccCccccCCCCCCcccCCCcchhhhccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHH
Q 019272 187 DAEAEIVPTCRELGIGIVAYSPLGRGFFSSGPELAENLSKDDYRQSLPRFQAENLEHNKKLFERVNEIAAKKGCTPSQLA 266 (343)
Q Consensus 187 ~~~~~ll~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~a 266 (343)
..-+...++++..|-..+.......|++. .. -...++.+...++++.++|+.++-
T Consensus 160 e~~~~~~~~~~~lG~~~v~~~k~~~gfi~-----------------------nr--l~~a~~~EA~~L~~~g~~s~~~id 214 (495)
T PRK07531 160 ETIRRAKEILREIGMKPVHIAKEIDAFVG-----------------------DR--LLEALWREALWLVKDGIATTEEID 214 (495)
T ss_pred HHHHHHHHHHHHcCCEEEeecCCCcchhH-----------------------HH--HHHHHHHHHHHHHHcCCCCHHHHH
Confidence 11134566777777665555545555443 00 112233566677788889988765
Q ss_pred HHHH
Q 019272 267 LAWV 270 (343)
Q Consensus 267 l~~~ 270 (343)
-...
T Consensus 215 ~~~~ 218 (495)
T PRK07531 215 DVIR 218 (495)
T ss_pred HHHh
Confidence 4443
No 281
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=20.40 E-value=5.3e+02 Score=25.58 Aligned_cols=128 Identities=18% Similarity=0.156 Sum_probs=66.6
Q ss_pred HHHHHHhhcCCCCCEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCC--cccEEEecCCCCCCCHHHHHHHHHH
Q 019272 68 ILLGKALKGGYRERVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVD--YIDLYYQHRIDTKVPIEITIGELKK 145 (343)
Q Consensus 68 ~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d--~iDl~~lH~~~~~~~~~~~~~~L~~ 145 (343)
+-+|.+|+. +.+++|+-.+... ++.-..+..-+.+-+++-++. .|-+=+=- -...+.......+..
T Consensus 342 ~dlG~~L~~--~~~l~VsINl~a~--------Dl~s~rli~~~~~~l~~~~v~pqQI~lElTE--R~f~D~~~~~~iI~r 409 (524)
T COG4943 342 RDLGDLLRQ--HRDLHVSINLSAS--------DLASPRLIDRLNRKLAQYQVRPQQIALELTE--RTFADPKKMTPIILR 409 (524)
T ss_pred HHhHHHHHh--CcceEEEEeeeeh--------hhcCchHHHHHHHHHHhcCcChHHheeehhh--hhhcCchhhhHHHHH
Confidence 556777765 6678888877643 344455666777777776643 22110000 011234556788899
Q ss_pred HHHcCCcceE---ecCCCcHHHHHHH-hcCCCee--Eec-ccccccccchhhhhHHHHHHhCCeEEecc
Q 019272 146 LVEEGKIKYI---GLSEASASTIRRA-HAVHPIT--AVQ-LEWSLWTRDAEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 146 l~~~G~ir~i---Gvs~~~~~~l~~~-~~~~~~~--~~q-~~~~~~~~~~~~~ll~~~~~~gi~v~a~~ 207 (343)
+++.|.--+| |..--+...+..+ ++..++| +++ +.++......-.-+++.++++|+.+++=+
T Consensus 410 ~ReaG~~IyIDDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaEG 478 (524)
T COG4943 410 LREAGHEIYIDDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAEG 478 (524)
T ss_pred HHhcCCeEEEccCcCcchhHHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEeec
Confidence 9999984333 3322222333222 1111111 111 12222222233568889999999888744
No 282
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=20.26 E-value=5.9e+02 Score=22.30 Aligned_cols=65 Identities=18% Similarity=0.314 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCC---------CHHHHHHHHHHhcCCCeeeccCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhccCCCC
Q 019272 249 ERVNEIAAKKGC---------TPSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTSEEIAELESIASADAVK 318 (343)
Q Consensus 249 ~~l~~ia~~~~~---------s~~q~al~~~l~~~~v~~~i~g~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~~~~ 318 (343)
..+..+|++.|+ +..+++-.++ ..+. .++|++++. ..|.+ .-++..++.+.+++|.++.++..+.
T Consensus 101 ~~~e~v~~~lgl~~~~PLW~~~~~~ll~e~i-~~G~-~aiIv~v~a-~gL~~--~~LGr~i~~e~i~~L~~~~~~~gvd 174 (223)
T TIGR00290 101 TRIERVCRELGLKSFAPLWHRDPEKLMEEFV-EEKF-EARIIAVAA-EGLDE--SWLGRRIDRKMIDELKKLNEKYGIH 174 (223)
T ss_pred HHHHHHHHhcCCEEeccccCCCHHHHHHHHH-HcCC-eEEEEEEec-CCCCh--HHcCCcccHHHHHHHHHHHhccCCC
Confidence 356677777654 5566555555 5554 455555543 23443 3467789999999998887654443
No 283
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=20.24 E-value=7.1e+02 Score=23.23 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc
Q 019272 35 KPESDMIALIHHAIDNGITFLDTS 58 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gin~~DTA 58 (343)
.+.++..++++..-+.||..|+..
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 477889999999999999999984
No 284
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=20.24 E-value=5.2e+02 Score=21.69 Aligned_cols=100 Identities=10% Similarity=0.045 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEEecCCCCCCCHHHHHHHHHHHHHcCCcce-EecCCCcHHHHHHHhcCCCeeEecc
Q 019272 101 GDPAYVRAACEASLKRLDVDYIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKY-IGLSEASASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 101 ~s~~~i~~~~~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~-iGvs~~~~~~l~~~~~~~~~~~~q~ 179 (343)
.++..+.+.++ .+.+.|.|+|-+-....+... ......+.++++++...+.- +++-..+....-+.+.....+.+|+
T Consensus 8 ~~~~~~~~~~~-~~~~~g~d~i~~~~~Dg~~~~-~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~v 85 (210)
T TIGR01163 8 ADFARLGEEVK-AVEEAGADWIHVDVMDGHFVP-NLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITV 85 (210)
T ss_pred CCHHHHHHHHH-HHHHcCCCEEEEcCCCCCCCC-CcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE
Confidence 34455555554 355778777766532222211 11234556666665433221 5555555554444444555677777
Q ss_pred cccccccchhhhhHHHHHHhCCeEE
Q 019272 180 EWSLWTRDAEAEIVPTCRELGIGIV 204 (343)
Q Consensus 180 ~~~~~~~~~~~~ll~~~~~~gi~v~ 204 (343)
...... .....+..+++.|+.+.
T Consensus 86 h~~~~~--~~~~~~~~~~~~g~~~~ 108 (210)
T TIGR01163 86 HPEASE--HIHRLLQLIKDLGAKAG 108 (210)
T ss_pred ccCCch--hHHHHHHHHHHcCCcEE
Confidence 543321 12456677888886543
No 285
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=20.19 E-value=7.2e+02 Score=23.23 Aligned_cols=39 Identities=8% Similarity=0.032 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCeeEec
Q 019272 140 IGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 140 ~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q 178 (343)
|+....+++.=.+--+++.+ ++++.++++++....|.+.
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~ 313 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVG 313 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeee
Confidence 44444444443455555554 3566666666655555543
No 286
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=20.18 E-value=6.3e+02 Score=22.55 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHcC-Ccc--eEecCCC----cHHHHHHHhcCCCeeEecccccccccchhhhhHHHHHHhCCeEE-eccc
Q 019272 137 EITIGELKKLVEEG-KIK--YIGLSEA----SASTIRRAHAVHPITAVQLEWSLWTRDAEAEIVPTCRELGIGIV-AYSP 208 (343)
Q Consensus 137 ~~~~~~L~~l~~~G-~ir--~iGvs~~----~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ll~~~~~~gi~v~-a~~p 208 (343)
+.+++.+++++++. .+. +.+..|- ..+.+-+.+....++.+-++.-+... ..++++.|+++|+..+ ..+|
T Consensus 72 ~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee--~~~~~~~~~~~gl~~i~lv~P 149 (256)
T TIGR00262 72 EKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEE--SGDLVEAAKKHGVKPIFLVAP 149 (256)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHH--HHHHHHHHHHCCCcEEEEECC
Confidence 46777888887652 223 5555552 22443333334445555554433322 3579999999998744 5555
Q ss_pred Cc
Q 019272 209 LG 210 (343)
Q Consensus 209 l~ 210 (343)
-.
T Consensus 150 ~T 151 (256)
T TIGR00262 150 NA 151 (256)
T ss_pred CC
Confidence 43
No 287
>PRK10551 phage resistance protein; Provisional
Probab=20.14 E-value=6.4e+02 Score=25.12 Aligned_cols=116 Identities=12% Similarity=0.101 Sum_probs=65.7
Q ss_pred CEEEEeecCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEE-ecCCCCCCCHHHHHHHHHHHHHcCCcceEecCC
Q 019272 81 RVELATKFGIINEDGQFLYRGDPAYVRAACEASLKRLDVDYIDLYY-QHRIDTKVPIEITIGELKKLVEEGKIKYIGLSE 159 (343)
Q Consensus 81 ~~~i~tK~~~~~~~~~~~~~~s~~~i~~~~~~SL~rLg~d~iDl~~-lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 159 (343)
.+.|+-.+... .+..+.+...+.+.++.++.+..-+.+ +.......+ .+..+.++.|++.|- .|.+.+
T Consensus 349 ~~~lsINis~~--------~l~~~~f~~~l~~~l~~~~~~~~~LvlEItE~~~~~~-~~~~~~l~~Lr~~G~--~ialDD 417 (518)
T PRK10551 349 GAKLGINISPA--------HLHSDSFKADVQRLLASLPADHFQIVLEITERDMVQE-EEATKLFAWLHSQGI--EIAIDD 417 (518)
T ss_pred CcEEEEEeCHH--------HHCCchHHHHHHHHHHhCCCCcceEEEEEechHhcCC-HHHHHHHHHHHHCCC--EEEEEC
Confidence 45555555532 223344667788889988876433222 222211122 446688899999999 565655
Q ss_pred CcH--HHHHHHhcCCCeeEeccccccccc--------chhhhhHHHHHHhCCeEEeccc
Q 019272 160 ASA--STIRRAHAVHPITAVQLEWSLWTR--------DAEAEIVPTCRELGIGIVAYSP 208 (343)
Q Consensus 160 ~~~--~~l~~~~~~~~~~~~q~~~~~~~~--------~~~~~ll~~~~~~gi~v~a~~p 208 (343)
|+. ..+..+. ..+++.+-+.-+.... ..-..+++.|++.|+.++|=+.
T Consensus 418 FGtg~ssl~~L~-~l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEGV 475 (518)
T PRK10551 418 FGTGHSALIYLE-RFTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEGV 475 (518)
T ss_pred CCCCchhHHHHH-hCCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 542 2233222 2345555444333221 1224689999999999988654
No 288
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.03 E-value=5e+02 Score=24.73 Aligned_cols=98 Identities=12% Similarity=0.127 Sum_probs=59.2
Q ss_pred HHhcCCCcccEEEecCCCC------------CCCHHHHHHHHHH-HHHcCC---cceEecC--CCcHHHHHH---HhcCC
Q 019272 114 LKRLDVDYIDLYYQHRIDT------------KVPIEITIGELKK-LVEEGK---IKYIGLS--EASASTIRR---AHAVH 172 (343)
Q Consensus 114 L~rLg~d~iDl~~lH~~~~------------~~~~~~~~~~L~~-l~~~G~---ir~iGvs--~~~~~~l~~---~~~~~ 172 (343)
|...|++.-=.+.||.+++ ..+++++++++.+ +.+.|+ |+++=+. |.+.+++++ ++...
T Consensus 227 L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~ 306 (368)
T PRK14456 227 LATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRF 306 (368)
T ss_pred HHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3333543222467888742 2366888888876 444552 4444333 344444444 44444
Q ss_pred CeeEecccccccccc----h----hhhhHHHHHHhCCeEEecccCcc
Q 019272 173 PITAVQLEWSLWTRD----A----EAEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 173 ~~~~~q~~~~~~~~~----~----~~~ll~~~~~~gi~v~a~~pl~~ 211 (343)
+..++-++||.+... + -..+.+..+++|+.+......+.
T Consensus 307 ~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 307 FCKINLIDYNSIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred CCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 567778888886542 1 14677888899999999887754
Done!