BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019273
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G10|A Chain A, Ligg From Sphingobium Sp. Syk-6 Is Related To The
Glutathione Transferase Omega Class
Length = 265
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 132 PTRLQLFEFEACPFCRRVREAITELDLSVEWMYEQVFPCPKGSIRHREMVRRLGGKEQFP 191
P L ++ CPF RV E+ L ++ + + R ++ + GG P
Sbjct: 4 PQELTIYHIPGCPFSERV-----EIXLELKGLRXKDVEIDISKPRPDWLLAKTGGTTALP 58
Query: 192 FLIDPNTGVSMYESGDIVNYLFQQY 216
L+D G S+ ES I+ YL Q+Y
Sbjct: 59 -LLDVENGESLKESXVILRYLEQRY 82
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 245 GMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYI---LQNVGDGSSRTKLL 301
G + W + D S + LFS PY + V++ L E ++ + L + +GS+ K L
Sbjct: 6 GTSQWLRKTVD--SAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCL 63
Query: 302 VDITGSKEVPYLIDPNTSTQIGDYKKILSY 331
+ + VP + IGD + +L Y
Sbjct: 64 ASFSKIETVPQMF--VRGKFIGDSQTVLKY 91
>pdb|3VK9|A Chain A, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|B Chain B, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|C Chain C, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|D Chain D, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
Length = 216
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 175 IRHREMVR----RLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRS 221
+ H E ++ +L + P L+D G+S++ES I+ YL +Y KG S
Sbjct: 35 LHHGEQLKPEYLKLNPQHTVPTLVD--DGLSIWESRAIITYLVNKYAKGSS 83
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 245 GMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYI---LQNVGDGSSRTKLL 301
G + W + D S + LFS PY + V++ L E ++ + L + +GS+ K L
Sbjct: 6 GTSQWLRKTVD--SAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCL 63
Query: 302 VDITGSKEVPYLIDPNTSTQIGDYKKILSY 331
+ + VP + IGD + +L Y
Sbjct: 64 ASFSKIETVPQMF--VRGKFIGDSQTVLKY 91
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 245 GMTLWEKARPDPPSKKLELFSYENNPYARIVREALCELELPYI---LQNVGDGSSRTKLL 301
G + W + D S + LFS PY + V++ L E ++ + L + +GS+ K L
Sbjct: 6 GTSQWLRKTVD--SAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCL 63
Query: 302 VDITGSKEVPYLIDPNTSTQIGDYKKILSY 331
+ + VP + IGD + +L Y
Sbjct: 64 ASFSKIETVPQMF--VRGKFIGDSQTVLKY 91
>pdb|3SJA|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJA|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJA|E Chain E, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJA|F Chain F, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJA|I Chain I, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJB|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJB|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|A Chain A, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|B Chain B, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|E Chain E, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|F Chain F, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJD|A Chain A, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|B Chain B, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|C Chain C, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
Length = 362
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 17 TNPAHNFS-SLSHRSSRNGNWVSGRNRLHAKSADPDAGTSQVGD 59
T+PAHN S + + ++ V+G N L DP A + D
Sbjct: 56 TDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMND 99
>pdb|3A36|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A36|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3B2E|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|C Chain C, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|D Chain D, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
Length = 362
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 17 TNPAHNFS-SLSHRSSRNGNWVSGRNRLHAKSADPDAGTSQVGD 59
T+PAHN S + + ++ V+G N L DP A + D
Sbjct: 56 TDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMND 99
>pdb|3IDQ|A Chain A, Crystal Structure Of S. Cerevisiae Get3 At 3.7 Angstrom
Resolution
Length = 369
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 17 TNPAHNFS-SLSHRSSRNGNWVSGRNRLHAKSADPDAGTSQVGD 59
T+PAHN S + + ++ V+G N L DP A + D
Sbjct: 56 TDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMND 99
>pdb|3VLC|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Semi Open
Conformation In Complex With Get1 Cytosolic Domain At
4.5 Angstrom Resolution
Length = 354
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 17 TNPAHNFS-SLSHRSSRNGNWVSGRNRLHAKSADPDAGTSQVGD 59
T+PAHN S + + ++ V+G N L DP A + D
Sbjct: 56 TDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMND 99
>pdb|2WOJ|A Chain A, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|B Chain B, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|C Chain C, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|D Chain D, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|3H84|A Chain A, Crystal Structure Of Get3
pdb|3H84|B Chain B, Crystal Structure Of Get3
pdb|3ZS8|A Chain A, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS8|B Chain B, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS9|A Chain A, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic
Get2 Fragment
pdb|3ZS9|B Chain B, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic
Get2 Fragment
Length = 354
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 17 TNPAHNFS-SLSHRSSRNGNWVSGRNRLHAKSADPDAGTSQVGD 59
T+PAHN S + + ++ V+G N L DP A + D
Sbjct: 56 TDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMND 99
>pdb|1F6F|A Chain A, Crystal Structure Of The Ternary Complex Between Ovine
Placental Lactogen And The Extracellular Domain Of The
Rat Prolactin Receptor
Length = 199
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 176 RHREMVRRLGGKEQFPF--LIDPNTGVSMYES---GDIVNYLFQQYGKG 219
+H R GK Q P L D T V+ Y S G++VN +QYG+G
Sbjct: 2 QHPPYCRNQPGKCQIPLQSLFDRATTVANYNSKLAGEMVNRFDEQYGQG 50
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 135 LQLFEFEACPFCRRVREAITELDLSVEWMYEQVFPCPKGSIRHREMVRRLG 185
++++ E CP+C R + ++ +S Q P + + EM++R G
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSF-----QELPIDGNAAKREEMIKRSG 48
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 126 ISNSDSPTRLQLFEFEACPFCRRVREAITEL 156
+++ P ++ +F CPFCR+ +E +++L
Sbjct: 5 VNSKIQPGKVVVFIKPTCPFCRKTQELLSQL 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,714,375
Number of Sequences: 62578
Number of extensions: 388326
Number of successful extensions: 788
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 16
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)