BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019274
(343 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P26294|PDS_SYNE7 15-cis-phytoene desaturase OS=Synechococcus elongatus (strain PCC
7942) GN=pds PE=1 SV=1
Length = 474
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/299 (20%), Positives = 138/299 (46%), Gaps = 15/299 (5%)
Query: 8 ERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPW 67
ER+ V + + F ++ SA L L L +K + + G E++ +P
Sbjct: 162 ERVNDEVFIAMAKALNFIDPDEISATVVLTALNRF-LQEKKGSMMAFLDGAPPERLCQPI 220
Query: 68 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----KETYSAGAVVLAVGISTLQE 122
++ ++ RG + L + +F+ +++ + + G ++ A A V A+ + L+
Sbjct: 221 VEHVQARGGDVLLNAPLKEFVLNDDSSVQAFRIAGIKGQEEQLIEADAYVSALPVDPLKL 280
Query: 123 LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNK 182
L+ ++ F ++ L + V+++ LWFD+K+T ++ + L+ + D++
Sbjct: 281 LLPDAWKA-MPYFQQLDGLQGVPVINIHLWFDRKLT--DIDHLLFSRSPLLS-VYADMSN 336
Query: 183 IYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCI-KDFS---TATVMDHKI 238
E++D ++++ F A + + D+ ++A ++ + K + FS A + +KI
Sbjct: 337 TCREYEDPDRSMLELVFAPAKDWIGRSDEDILAATMAEIEKLFPQHFSGENPARLRKYKI 396
Query: 239 RRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 297
+ P S+ PG +Y + N F+ GD+ R+ + S E + ++G A ++
Sbjct: 397 VKTPLSVYKATPGRQQYRPDQASPIANFFLTGDYTMQRYLA-SMEGAVLSGKLTAQAII 454
>sp|P29273|CRTI_SYNY3 Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=pds PE=3 SV=2
Length = 472
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/263 (18%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 44 LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG- 102
L + + + G E++ +P +D + RG E + + + + +E+ ++ G
Sbjct: 197 LQEKNGSKMAFLDGAPPERLCQPLVDYITERGGEVHINKPLKEILLNEDGSVKGYLIRGL 256
Query: 103 ----KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT 158
E +A V A+ + L+ ++ + EF ++ L + V+++ LWFD+K+T
Sbjct: 257 DGAPDEVITADLYVSAMPVDPLKTMVP-APWREYPEFKQIQGLEGVPVINLHLWFDRKLT 315
Query: 159 VPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAV 218
++ + L+ + D++ E+ D ++++ A + + D+++VA +
Sbjct: 316 --DIDHLLFSRSPLLS-VYADMSNTCREYSDPDKSMLELVLAPAQDWIGKSDEEIVAATM 372
Query: 219 SYLSKCIKDF----STATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWIT 274
+ + + + A ++ + + P+S+ PG TS PN ++AGD+
Sbjct: 373 AEIKQLFPQHFNGDNPARLLKSHVVKTPRSVYKATPGRQACRPDQRTSVPNFYLAGDFTM 432
Query: 275 TRHGSWSQERSYVTGLEAANRVV 297
++ S E + ++G + A +
Sbjct: 433 QKYLG-SMEGAVLSGKQCAQAIA 454
>sp|P80093|PDS_CAPAN 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum
annuum GN=PDS PE=1 SV=1
Length = 582
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/262 (19%), Positives = 111/262 (42%), Gaps = 10/262 (3%)
Query: 44 LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK 103
L + + + G E++ P ++ + ++G + R+ +E+ ++
Sbjct: 308 LQEKHGSKMAFLDGNPPERLCMPIVEHIESKGGQVRLNSRIKKIELNEDGSVKCFILNDG 367
Query: 104 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS 163
T A V A + + L+ F K+ L + V++V +WFD+K+ N S
Sbjct: 368 STIEGDAFVFATPVDIFKLLLPED-WKEIPYFQKLEKLVGVPVINVHIWFDRKLK--NTS 424
Query: 164 NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 223
+ L + D++ E+ D + ++++ F A E + D +++ + L+K
Sbjct: 425 DNLLFSRSPLLSVYADMSVTCKEYYDPNKSMLELVFAPAEEWVSRSDSEIIDATMKELAK 484
Query: 224 CIK-----DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHG 278
D S A ++ + + + P+S+ PG + + ++AGD+ ++
Sbjct: 485 LFPDEISADQSKAKILKYHVVKTPRSVYKTVPGCEPCRLLQRSPVEGFYLAGDYTKQKYL 544
Query: 279 SWSQERSYVTGLEAANRVV-DY 299
+ S E + ++G A +V DY
Sbjct: 545 A-SMEGAVLSGKLCAQAIVQDY 565
>sp|P49086|CRTI_MAIZE Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays
GN=PDS1 PE=2 SV=1
Length = 571
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/262 (19%), Positives = 109/262 (41%), Gaps = 10/262 (3%)
Query: 44 LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK 103
L + + + G E++ P +D +R+RG E R+ + + +
Sbjct: 294 LQEKHGSKMAFLDGNPPERLCMPIVDHIRSRGGEVRLNSRIKKIELNPDGTVKHFALSDG 353
Query: 104 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS 163
+ A V A + + L+ F K+ L + V++V +WFD+K+ N
Sbjct: 354 TQITGDAYVCATPVDIFKLLVPQE-WSEITYFKKLEKLVGVPVINVHIWFDRKLN--NTY 410
Query: 164 NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 223
+ SL + D++ E+ D + ++++ F A+E + D +++ + L+K
Sbjct: 411 DHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPADEWIGRSDTEIIDATMEELAK 470
Query: 224 CIK-----DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHG 278
D S A ++ + I + P+S+ P + ++AGD+ ++
Sbjct: 471 LFPDEIAADQSKAKILKYHIVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYL 530
Query: 279 SWSQERSYVTGLEAANRVV-DY 299
+ S E + ++G A +V DY
Sbjct: 531 A-SMEGAVLSGKLCAQSIVQDY 551
>sp|Q07356|PDS_ARATH 15-cis-phytoene desaturase, chloroplastic/chromoplastic
OS=Arabidopsis thaliana GN=PDS PE=1 SV=1
Length = 566
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 110/262 (41%), Gaps = 10/262 (3%)
Query: 44 LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK 103
L + + + G E++ P +D +R+ G E R+ +++ S ++
Sbjct: 290 LQEKHGSKMAFLDGNPPERLCMPVVDHIRSLGGEVQLNSRIKKIELNDDGTVKSFLLTNG 349
Query: 104 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS 163
T A V A + L+ L+ + F K+ L + V++V +WFD+K+ N
Sbjct: 350 STVEGDAYVFAAPVDILKLLLPDP-WKEIPYFKKLDKLVGVPVINVHIWFDRKLK--NTY 406
Query: 164 NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 223
+ +L + D++ E+ D + ++++ F A E + D ++ + L K
Sbjct: 407 DHLLFSRSNLLSVYADMSLTCKEYYDPNRSMLELVFAPAEEWISRTDSDIIDATMKELEK 466
Query: 224 CIK-----DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHG 278
D S A ++ + + + P+S+ P + ++AGD+ ++
Sbjct: 467 LFPDEISADQSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPIEGFYLAGDYTKQKYL 526
Query: 279 SWSQERSYVTGLEAANRVV-DY 299
+ S E + ++G + +V DY
Sbjct: 527 A-SMEGAVLSGKFCSQSIVQDY 547
>sp|Q0DUI8|CRTI_ORYSJ Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa
subsp. japonica GN=PDS PE=2 SV=2
Length = 578
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 107/260 (41%), Gaps = 9/260 (3%)
Query: 44 LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK 103
L + + + G E++ P +D +R+ G E R+ + + +
Sbjct: 302 LQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDG 361
Query: 104 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS 163
+ A V A + L+ L+ F K+ L + V++V +WFD+K+ N
Sbjct: 362 TQITGDAYVFATPVDILKLLVPQE-WKEISYFKKLEKLVGVPVINVHIWFDRKLK--NTY 418
Query: 164 NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 223
+ SL + D++ E+ D + ++++ F A E + D +++ + L+K
Sbjct: 419 DHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAK 478
Query: 224 CIK-----DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHG 278
D S A ++ + + + P+S+ P + ++AGD+ ++
Sbjct: 479 LFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYL 538
Query: 279 SWSQERSYVTGLEAANRVVD 298
+ S E + ++G A VV+
Sbjct: 539 A-SMEGAVLSGKLCAQSVVE 557
>sp|A2XDA1|CRTI_ORYSI Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa
subsp. indica GN=PDS1 PE=2 SV=2
Length = 578
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 107/260 (41%), Gaps = 9/260 (3%)
Query: 44 LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK 103
L + + + G E++ P +D +R+ G E R+ + + +
Sbjct: 302 LQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDG 361
Query: 104 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS 163
+ A V A + L+ L+ F K+ L + V++V +WFD+K+ N
Sbjct: 362 TQITGDAYVFATPVDILKLLVPQE-WKEISYFKKLEKLVGVPVINVHIWFDRKLK--NTY 418
Query: 164 NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 223
+ SL + D++ E+ D + ++++ F A E + D +++ + L+K
Sbjct: 419 DHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAK 478
Query: 224 CIK-----DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHG 278
D S A ++ + + + P+S+ P + ++AGD+ ++
Sbjct: 479 LFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYL 538
Query: 279 SWSQERSYVTGLEAANRVVD 298
+ S E + ++G A VV+
Sbjct: 539 A-SMEGAVLSGKLCAQSVVE 557
>sp|P28553|CRTI_SOYBN Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max
GN=PDS1 PE=2 SV=1
Length = 570
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 110/259 (42%), Gaps = 9/259 (3%)
Query: 44 LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK 103
L + + + G E++ P +D +++ G E R+ +++ S ++
Sbjct: 296 LQEKHGSKMAFLDGNPPERLCMPIVDYIQSLGGEVHLNSRIQKIELNDDGTVKSFLLNNG 355
Query: 104 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS 163
+ A V A + L+ L+ ++ F ++ L + V++V +WFD+K+ N
Sbjct: 356 KVMEGDAYVFATPVDILKLLLPDN-WKGIPYFQRLDKLVGVPVINVHIWFDRKLK--NTY 412
Query: 164 NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 223
+ L + D++ E+ + ++++ F A E + DD ++ ++ L+K
Sbjct: 413 DHLLFSRSPLLSVYADMSVTCKEYYSPNQSMLELVFAPAEEWISRSDDDIIQATMTELAK 472
Query: 224 CIK-----DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHG 278
D S A ++ + + + P+S+ P + ++AGD+ ++
Sbjct: 473 LFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYL 532
Query: 279 SWSQERSYVTGLEAANRVV 297
+ S E + ++G A +V
Sbjct: 533 A-SMEGAVLSGKLCAQAIV 550
>sp|Q40406|CRTI_NARPS Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus
pseudonarcissus GN=PDS1 PE=1 SV=1
Length = 570
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/264 (19%), Positives = 111/264 (42%), Gaps = 14/264 (5%)
Query: 44 LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK 103
L + + + G E++ P +D +++ G R+ + + V+
Sbjct: 295 LQEKHGSKMAFLDGNPPERLCMPIVDHIQSLGGRAQLNSRLQKIELNPDGTVKHFVLGNG 354
Query: 104 ETYSAGAVVLAVGISTLQELIKNSILCNRE--EFLKVLNLASIDVVSVKLWFDKKVTVPN 161
+ A V+A + L+ L+ RE F K+ L + V++V +WFD+K+ N
Sbjct: 355 NIITGDAYVVAAPVDILKLLLPQEW---REIPYFQKLDKLVGVPVINVHIWFDRKLK--N 409
Query: 162 VSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYL 221
+ L + D++ E+ D + ++++ F A E + D +++ + + L
Sbjct: 410 TYDHLLFTRSPLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWISRSDSEIIERTMKEL 469
Query: 222 SKCIK-----DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTR 276
+K D S A ++ + + + P+S+ P + ++AGD+ +
Sbjct: 470 AKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTNQK 529
Query: 277 HGSWSQERSYVTGLEAANRVV-DY 299
+ + S E + ++G A +V DY
Sbjct: 530 YLA-SMEGAVLSGKLCAQSIVQDY 552
>sp|P28554|CRTI_SOLLC Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum
lycopersicum GN=PDS PE=2 SV=1
Length = 583
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/262 (18%), Positives = 109/262 (41%), Gaps = 10/262 (3%)
Query: 44 LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK 103
L + + + G E++ P ++ + ++G + R+ +E+ S ++
Sbjct: 309 LQEKHGSKMAFLDGNPPERLCMPIVEHIESKGGQVRLNSRIKKIELNEDGSVKSFILSDG 368
Query: 104 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS 163
A V A + + L+ F K+ L + V++V +WFD+K+ N
Sbjct: 369 SAIEGDAFVFAAPVDIFKLLLPED-WKEIPYFQKLEKLVGVPVINVHIWFDRKLK--NTY 425
Query: 164 NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 223
+ SL + D++ E+ + + ++++ F A E + D +++ + L+
Sbjct: 426 DHLLFSRSSLLSVYADMSVTCKEYYNPNQSMLELVFAPAEEWISRSDSEIIDATMKELAT 485
Query: 224 CIK-----DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHG 278
D S A ++ + + + P+S+ PG + ++AGD+ ++
Sbjct: 486 LFPDEISADQSKAKILKYHVVKTPRSVYKTVPGCEPCRPLQRSPIEGFYLAGDYTKQKYL 545
Query: 279 SWSQERSYVTGLEAANRVV-DY 299
+ S E + ++G A +V DY
Sbjct: 546 A-SMEGAVLSGKLCAQAIVQDY 566
>sp|Q9R6X4|ZDS_NOSS1 Zeta-carotene desaturase OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=crtQ PE=3 SV=2
Length = 479
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/315 (20%), Positives = 121/315 (38%), Gaps = 25/315 (7%)
Query: 5 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIF 64
G S + + P+ F E SA L I F + + + L G+ E +
Sbjct: 165 GGSNGSIKRMWNPIAYALGFIDCENISARCMLTIFQFFAVRSEASV-LRMLEGSPDEYLH 223
Query: 65 EPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVCGK----ETYSAGAVVLAVGIS 118
+P + + RG + R+V + Y E + ++ +V K E +A A V A I
Sbjct: 224 QPILRYLEARGTKVYTRRQVREIKYAEAEGQTRVTGIVVAKGDEVEEITADAYVCACDIP 283
Query: 119 TLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNA------CSGFGDS 172
+Q ++ EF + L ++ V +V++ FD VT N +G D+
Sbjct: 284 GIQRVLPQE-WRKWSEFDNIYKLDAVPVATVQMRFDGWVTELQDENKRKQLKEAAGL-DN 341
Query: 173 LAWT-------FFDL--NKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 223
L +T F DL D ++ +++Q + + ++ + + + +
Sbjct: 342 LLYTADADFSCFADLALTSPSDYYRQGQGSLLQLVLTPGDPFIKESNEAIAQHVLKQVYE 401
Query: 224 CIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQE 283
+ + + + +SL PG Y T N F+AG + + S E
Sbjct: 402 LFPSSRELNMTWYSVVKLAQSLYREAPGMDVYRPNQKTPIANFFLAGSYTQQDYID-SME 460
Query: 284 RSYVTGLEAANRVVD 298
+ V+G AA ++D
Sbjct: 461 GATVSGRRAAKVILD 475
>sp|P74306|ZDS_SYNY3 Zeta-carotene desaturase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=crtQ PE=3 SV=1
Length = 489
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 126/314 (40%), Gaps = 24/314 (7%)
Query: 5 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIF 64
G +E + + P+ F E SA L I + + A + L G+ +E +
Sbjct: 165 GGNEGSLKKMWDPIAYALGFIDTENISARCMLTI-FQLFAARTEASVLRMLEGSPQEYLH 223
Query: 65 EPWMDSMRTRGCEFLDGRRVTDF---IYDEER----CCISDVVCGKETYSAGAVVLAVGI 117
+P + + RG +F +V + + D E I+D V K T +A A V A +
Sbjct: 224 KPIQEYLEQRGTKFYTRHKVKEIKTKVTDGETRVTGLIINDGVETK-TVTADAYVAACDV 282
Query: 118 STLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN----VSNACSGFG-DS 172
++ L+ + + F K+ L ++ V +V+L FD VT N FG D+
Sbjct: 283 PGIKNLLPENWRTQWDFFNKIYYLDTVPVATVQLRFDGWVTEMNDPAKRKQLEQAFGLDN 342
Query: 173 LAWT-------FFDL--NKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 223
L +T F DL D ++ +++Q + M ++ + + + +
Sbjct: 343 LLYTSDAEFSCFADLALTSPADYYRPGEGSLLQLVLTPGDPFMKESNEAIAYRVLKQVKA 402
Query: 224 CIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQE 283
+ + + + + +SL PG + T N F+AG + + S E
Sbjct: 403 LFPSAADLNMTWYSVIKLAQSLYREAPGMDLFRPSQATPIANFFLAGSYTQQDYID-SME 461
Query: 284 RSYVTGLEAANRVV 297
+ ++G +AA ++
Sbjct: 462 GATLSGRQAAQAIL 475
>sp|Q31N27|ZDS_SYNE7 Probable zeta-carotene desaturase OS=Synechococcus elongatus
(strain PCC 7942) GN=zds PE=3 SV=1
Length = 481
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 64/317 (20%), Positives = 123/317 (38%), Gaps = 29/317 (9%)
Query: 5 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIF 64
G SE + + P+ F E SA L + + + A + L G+ E +
Sbjct: 165 GGSEGSLKRMWNPIAYALGFIDTENISARCMLTV-FQMFAAKTEASKLNLLAGSPAEYLH 223
Query: 65 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAV--------VLAVG 116
+P +D ++ RG RRV + Y E VV G + AV + A
Sbjct: 224 KPILDYIQARGATLHLRRRVREIEYTETNG--QTVVTGLQIADGDAVERVEADVYLAACD 281
Query: 117 ISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT------VPNVSNACSGFG 170
+ +Q L+ + EF + L ++ V +V+L FD VT + + +G
Sbjct: 282 VPGIQRLLPEA-WRKWSEFDNIYKLDAVPVATVQLRFDGWVTELGDREKRHQLDHATGL- 339
Query: 171 DSLAWT-------FFD--LNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYL 221
D+L +T F D L+ D ++ +++Q + + +K++ + + +
Sbjct: 340 DNLLYTADADFSCFTDLALSSPKDYYRKGQGSLLQCVLTPGDPFIAMKNEDIAQHVLKQV 399
Query: 222 SKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWS 281
+ + + + +SL PG + T N F+AG + + S
Sbjct: 400 HELFPSSRDLNMTWSNVVKLAQSLYREAPGMDPFRPDQKTPIANFFLAGSYTQQDYID-S 458
Query: 282 QERSYVTGLEAANRVVD 298
E + ++G AA +++
Sbjct: 459 MEGATISGRRAAKAMLE 475
>sp|O18141|NHR79_CAEEL Nuclear hormone receptor family member nhr-79 OS=Caenorhabditis
elegans GN=nhr-79 PE=2 SV=2
Length = 463
Score = 35.4 bits (80), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301
G FP++F D I +R S S+ +YVTG+E R+ G
Sbjct: 159 GVDDFPDIFTDSDEIRSRMTSISEASAYVTGMEEEERLFGLAG 201
>sp|Q31IB6|GLGB_THICR 1,4-alpha-glucan branching enzyme GlgB OS=Thiomicrospira crunogena
(strain XCL-2) GN=glgB PE=3 SV=1
Length = 726
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 134 EFLKVLNL-ASIDVVSVKLWFDKKVTVPNVSNAC--SGFGDSLAWT---------FFDLN 181
EFLK LN + ++ + P VS G G S+ W FF +
Sbjct: 439 EFLKTLNAEVHAQCPGALMMAEESTSWPMVSRPTWMGGLGFSMKWNMGWMNDTLDFFQQD 498
Query: 182 KIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKD 227
IY + + T Q Y N ++PL D+VV + +SK D
Sbjct: 499 PIYRPYHHNQLTFSQMYAYSENFILPLSHDEVVHMKHALVSKMPGD 544
>sp|Q9ZCN2|Y691_RICPR Uncharacterized protein RP691 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP691 PE=4 SV=1
Length = 656
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 136 LKVLNLAS-IDVVSVKLWFDKKVTVPNVSNACSGFGDSLA----WTFFDLNKIYDEHKDD 190
LK+L+LA+ IDV++ ++ NV NA S G ++A T LNKI DD
Sbjct: 578 LKLLSLATLIDVLTTA------ISDLNVGNAISSAGKNIAEKTATTLTWLNKIASGTNDD 631
Query: 191 SATVIQADFYHANELMPL 208
+ I D H EL PL
Sbjct: 632 TNDDIVIDIAHTEELQPL 649
>sp|O67115|SYW_AQUAE Tryptophan--tRNA ligase OS=Aquifex aeolicus (strain VF5) GN=trpS
PE=3 SV=1
Length = 395
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 7/47 (14%)
Query: 290 LEAANRVVDYLGDGSFSKIIPVEEDE-PHIEALRTVNRRFNEIRAQL 335
L+AA+ ++ Y G+G +PV ED+ PHIE R + RRFN + ++
Sbjct: 200 LQAAD-ILIYKGEG-----VPVGEDQLPHIELSREIARRFNRLYGKI 240
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,044,526
Number of Sequences: 539616
Number of extensions: 5162291
Number of successful extensions: 14272
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 14265
Number of HSP's gapped (non-prelim): 19
length of query: 343
length of database: 191,569,459
effective HSP length: 118
effective length of query: 225
effective length of database: 127,894,771
effective search space: 28776323475
effective search space used: 28776323475
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)