Query 019274
Match_columns 343
No_of_seqs 153 out of 1631
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02487 zeta-carotene desatur 100.0 9.7E-36 2.1E-40 287.0 30.3 297 2-301 237-554 (569)
2 TIGR02732 zeta_caro_desat caro 100.0 2.6E-34 5.6E-39 274.9 28.6 294 1-297 160-474 (474)
3 PLN02612 phytoene desaturase 100.0 1.5E-33 3.2E-38 274.6 30.8 296 1-302 249-550 (567)
4 TIGR03467 HpnE squalene-associ 100.0 1.1E-30 2.5E-35 247.4 28.9 280 2-298 138-419 (419)
5 TIGR02731 phytoene_desat phyto 100.0 6E-30 1.3E-34 244.9 29.1 289 2-297 155-453 (453)
6 PRK07233 hypothetical protein; 100.0 1.6E-27 3.4E-32 227.0 29.0 287 5-301 141-432 (434)
7 PRK07208 hypothetical protein; 99.9 6.3E-24 1.4E-28 204.8 25.2 299 4-314 141-472 (479)
8 COG1232 HemY Protoporphyrinoge 99.9 4.5E-24 9.7E-29 198.4 21.9 278 2-297 141-443 (444)
9 TIGR00562 proto_IX_ox protopor 99.9 2.6E-23 5.5E-28 199.7 24.6 282 3-301 144-461 (462)
10 PRK12416 protoporphyrinogen ox 99.9 4.1E-23 8.8E-28 198.3 24.6 278 4-300 154-461 (463)
11 TIGR02733 desat_CrtD C-3',4' d 99.9 1.8E-22 4E-27 195.1 25.1 279 6-299 182-491 (492)
12 PLN02576 protoporphyrinogen ox 99.9 1.8E-22 3.8E-27 195.5 24.4 282 4-301 154-488 (496)
13 PRK11883 protoporphyrinogen ox 99.9 2.2E-22 4.7E-27 192.7 23.9 276 4-298 149-450 (451)
14 TIGR02734 crtI_fam phytoene de 99.9 3E-21 6.6E-26 187.1 24.5 282 6-304 172-496 (502)
15 TIGR02730 carot_isom carotene 99.9 1.9E-20 4.2E-25 180.9 25.0 281 7-301 181-493 (493)
16 PLN02268 probable polyamine ox 99.9 1.8E-20 3.9E-25 178.6 20.5 268 4-300 153-434 (435)
17 PLN03000 amine oxidase 99.9 1.4E-19 3E-24 179.4 23.2 232 52-302 373-625 (881)
18 COG3349 Uncharacterized conser 99.8 2.8E-20 6.1E-25 172.5 16.6 298 1-302 155-465 (485)
19 PF01593 Amino_oxidase: Flavin 99.8 5.4E-20 1.2E-24 174.3 18.8 271 14-297 162-450 (450)
20 PLN02529 lysine-specific histo 99.8 5.4E-19 1.2E-23 174.5 23.8 232 52-302 349-600 (738)
21 PLN02676 polyamine oxidase 99.8 2.1E-19 4.6E-24 172.4 17.0 236 56-302 220-475 (487)
22 KOG4254 Phytoene desaturase [C 99.8 3.4E-18 7.4E-23 154.2 23.0 241 49-302 253-548 (561)
23 PLN02328 lysine-specific histo 99.8 4.2E-18 9.2E-23 169.0 24.3 258 52-333 429-709 (808)
24 PLN02568 polyamine oxidase 99.8 1.2E-18 2.5E-23 168.7 19.8 281 12-302 176-537 (539)
25 PLN02976 amine oxidase 99.8 2.4E-18 5.2E-23 175.4 21.1 234 53-303 929-1189(1713)
26 COG1231 Monoamine oxidase [Ami 99.8 5.7E-17 1.2E-21 148.0 20.3 233 54-300 203-447 (450)
27 KOG1276 Protoporphyrinogen oxi 99.8 1.5E-17 3.2E-22 149.5 13.9 280 2-297 162-490 (491)
28 COG1233 Phytoene dehydrogenase 99.6 7.1E-15 1.5E-19 141.4 17.4 236 50-299 214-482 (487)
29 KOG0029 Amine oxidase [Seconda 99.6 9.3E-15 2E-19 139.4 15.8 230 55-302 214-461 (501)
30 COG3380 Predicted NAD/FAD-depe 99.6 2.1E-15 4.6E-20 128.2 7.6 219 57-300 105-331 (331)
31 KOG0685 Flavin-containing amin 99.5 1E-13 2.2E-18 126.9 13.3 239 54-301 217-492 (498)
32 COG2907 Predicted NAD/FAD-bind 99.2 4.4E-11 9.6E-16 105.5 9.4 139 1-149 157-300 (447)
33 PRK13977 myosin-cross-reactive 99.2 8.3E-09 1.8E-13 99.2 22.8 284 21-310 183-532 (576)
34 TIGR02352 thiamin_ThiO glycine 98.7 4.1E-06 8.9E-11 77.0 20.3 195 61-298 137-335 (337)
35 PF01266 DAO: FAD dependent ox 98.6 2.7E-06 5.9E-11 78.5 18.4 63 61-126 147-209 (358)
36 PTZ00363 rab-GDP dissociation 98.6 2.1E-07 4.5E-12 88.3 10.9 114 1-117 172-288 (443)
37 PRK00711 D-amino acid dehydrog 98.6 1.2E-05 2.6E-10 76.3 20.8 200 61-298 201-401 (416)
38 PF06100 Strep_67kDa_ant: Stre 98.4 5E-05 1.1E-09 71.5 20.6 272 18-293 161-499 (500)
39 TIGR01373 soxB sarcosine oxida 98.3 0.00017 3.7E-09 68.2 20.7 197 62-298 184-384 (407)
40 TIGR03329 Phn_aa_oxid putative 98.2 5.7E-05 1.2E-09 72.7 16.5 56 61-120 183-238 (460)
41 TIGR03197 MnmC_Cterm tRNA U-34 98.2 8.7E-05 1.9E-09 69.6 16.6 63 54-120 126-191 (381)
42 TIGR01377 soxA_mon sarcosine o 98.2 0.00046 9.9E-09 64.6 20.6 57 61-120 145-201 (380)
43 PF07156 Prenylcys_lyase: Pren 98.1 1.2E-05 2.5E-10 74.4 8.5 107 1-120 76-188 (368)
44 PRK12409 D-amino acid dehydrog 98.1 0.00051 1.1E-08 65.1 19.6 57 61-120 197-259 (410)
45 PF00996 GDI: GDP dissociation 98.0 6.9E-05 1.5E-09 70.7 11.3 109 2-114 173-284 (438)
46 PRK11259 solA N-methyltryptoph 97.9 0.0017 3.8E-08 60.6 20.2 57 61-120 149-205 (376)
47 KOG2820 FAD-dependent oxidored 97.9 0.0008 1.7E-08 60.1 16.5 63 63-126 155-218 (399)
48 TIGR03377 glycerol3P_GlpA glyc 97.8 0.017 3.6E-07 56.6 24.4 58 61-120 128-191 (516)
49 TIGR02032 GG-red-SF geranylger 97.7 0.0047 1E-07 55.3 18.7 56 62-120 92-149 (295)
50 PRK01747 mnmC bifunctional tRN 97.7 0.002 4.2E-08 65.0 17.5 64 53-120 398-464 (662)
51 COG0665 DadA Glycine/D-amino a 97.7 0.0066 1.4E-07 56.9 19.1 205 62-299 157-367 (387)
52 PRK11101 glpA sn-glycerol-3-ph 97.5 0.038 8.1E-07 54.5 22.8 58 61-120 149-212 (546)
53 PF03486 HI0933_like: HI0933-l 97.5 0.00034 7.4E-09 65.9 7.7 67 51-119 99-166 (409)
54 PRK10015 oxidoreductase; Provi 97.4 0.044 9.6E-07 52.3 20.9 56 63-120 110-165 (429)
55 PLN02464 glycerol-3-phosphate 97.3 0.061 1.3E-06 53.9 21.6 59 61-120 232-297 (627)
56 COG0644 FixC Dehydrogenases (f 97.3 0.08 1.7E-06 49.9 21.4 57 63-120 97-153 (396)
57 COG0578 GlpA Glycerol-3-phosph 97.2 0.064 1.4E-06 51.8 20.0 57 62-121 165-227 (532)
58 PRK06847 hypothetical protein; 97.2 0.052 1.1E-06 50.6 18.7 56 62-120 108-164 (375)
59 TIGR03378 glycerol3P_GlpB glyc 97.2 0.0015 3.2E-08 61.4 7.9 64 61-126 263-329 (419)
60 PRK06185 hypothetical protein; 97.1 0.047 1E-06 51.6 18.0 57 62-120 109-170 (407)
61 KOG2844 Dimethylglycine dehydr 97.1 0.022 4.8E-07 55.6 14.8 96 21-119 146-243 (856)
62 COG2509 Uncharacterized FAD-de 97.0 0.002 4.3E-08 60.0 7.1 57 61-119 173-230 (486)
63 PRK08773 2-octaprenyl-3-methyl 97.0 0.089 1.9E-06 49.5 18.0 56 62-120 114-170 (392)
64 TIGR03862 flavo_PP4765 unchara 96.8 0.0047 1E-07 57.5 8.1 64 51-119 76-141 (376)
65 PRK12266 glpD glycerol-3-phosp 96.8 0.39 8.4E-06 47.0 21.6 57 61-120 155-217 (508)
66 COG2081 Predicted flavoprotein 96.8 0.0036 7.8E-08 57.5 6.9 64 51-118 101-166 (408)
67 TIGR02485 CobZ_N-term precorri 96.8 0.0051 1.1E-07 58.7 8.3 64 54-119 117-183 (432)
68 PTZ00383 malate:quinone oxidor 96.8 0.0047 1E-07 59.8 7.7 59 61-121 211-275 (497)
69 PRK07333 2-octaprenyl-6-methox 96.6 0.2 4.2E-06 47.2 17.9 56 62-120 112-168 (403)
70 TIGR01984 UbiH 2-polyprenyl-6- 96.6 0.2 4.4E-06 46.8 17.2 56 62-120 106-163 (382)
71 PRK08274 tricarballylate dehyd 96.5 0.0093 2E-07 57.6 8.1 58 60-119 130-192 (466)
72 PRK13369 glycerol-3-phosphate 96.5 0.72 1.6E-05 45.0 21.1 57 61-120 155-216 (502)
73 KOG2852 Possible oxidoreductas 96.5 0.087 1.9E-06 46.5 12.8 62 61-126 147-214 (380)
74 PRK07045 putative monooxygenas 96.5 0.63 1.4E-05 43.6 19.9 59 62-121 107-167 (388)
75 PF01494 FAD_binding_3: FAD bi 96.4 0.16 3.4E-06 46.5 15.4 62 62-125 112-179 (356)
76 TIGR01988 Ubi-OHases Ubiquinon 96.4 0.24 5.2E-06 46.2 16.7 56 62-120 107-164 (385)
77 PRK07190 hypothetical protein; 96.4 1 2.2E-05 43.8 21.3 56 63-121 111-167 (487)
78 COG0654 UbiH 2-polyprenyl-6-me 96.4 0.27 5.9E-06 46.2 16.9 62 61-125 104-169 (387)
79 PRK05714 2-octaprenyl-3-methyl 96.4 0.37 8.1E-06 45.5 18.0 60 62-124 113-174 (405)
80 COG0579 Predicted dehydrogenas 96.4 0.012 2.5E-07 55.5 7.3 59 61-121 153-213 (429)
81 PF13738 Pyr_redox_3: Pyridine 96.4 0.0086 1.9E-07 50.6 6.0 57 61-120 82-139 (203)
82 PF00890 FAD_binding_2: FAD bi 96.3 0.012 2.7E-07 55.8 7.2 59 60-120 140-204 (417)
83 PRK11728 hydroxyglutarate oxid 96.2 0.016 3.4E-07 54.6 7.5 56 61-119 149-204 (393)
84 PRK06134 putative FAD-binding 96.2 0.017 3.6E-07 57.4 7.8 58 61-120 217-279 (581)
85 PRK07494 2-octaprenyl-6-methox 96.1 0.31 6.7E-06 45.7 15.5 56 62-120 112-168 (388)
86 TIGR00275 flavoprotein, HI0933 96.0 0.026 5.6E-07 53.3 8.0 64 53-119 97-160 (400)
87 PRK07588 hypothetical protein; 96.0 0.73 1.6E-05 43.2 17.8 55 63-121 105-160 (391)
88 PRK12845 3-ketosteroid-delta-1 96.0 0.023 5E-07 56.1 7.7 58 61-120 217-279 (564)
89 TIGR01790 carotene-cycl lycope 96.0 1.4 3.1E-05 41.2 21.9 56 61-119 85-141 (388)
90 PRK07121 hypothetical protein; 95.9 0.022 4.9E-07 55.3 7.3 60 60-120 176-240 (492)
91 TIGR01816 sdhA_forward succina 95.9 0.031 6.7E-07 55.3 8.3 58 60-119 118-181 (565)
92 PRK08244 hypothetical protein; 95.9 0.96 2.1E-05 44.0 18.6 55 63-120 102-160 (493)
93 PLN02697 lycopene epsilon cycl 95.9 1.9 4.2E-05 42.2 22.8 55 62-119 193-248 (529)
94 PRK12843 putative FAD-binding 95.9 0.026 5.7E-07 56.0 7.7 58 61-120 221-283 (578)
95 KOG1439 RAB proteins geranylge 95.9 0.053 1.2E-06 49.8 8.7 84 30-115 200-285 (440)
96 PRK10157 putative oxidoreducta 95.8 0.036 7.7E-07 52.9 8.1 55 63-119 110-164 (428)
97 PRK06834 hypothetical protein; 95.8 1.1 2.3E-05 43.7 18.4 56 62-120 101-157 (488)
98 TIGR00031 UDP-GALP_mutase UDP- 95.7 0.0038 8.2E-08 58.2 1.0 108 4-121 140-249 (377)
99 PRK08850 2-octaprenyl-6-methox 95.7 1 2.2E-05 42.6 17.5 59 63-124 113-174 (405)
100 TIGR01813 flavo_cyto_c flavocy 95.7 0.029 6.3E-07 53.7 7.0 59 61-120 130-193 (439)
101 PRK07608 ubiquinone biosynthes 95.7 0.98 2.1E-05 42.2 17.2 55 62-120 112-168 (388)
102 PRK04176 ribulose-1,5-biphosph 95.7 0.044 9.5E-07 48.4 7.4 59 61-120 104-174 (257)
103 PRK12835 3-ketosteroid-delta-1 95.7 0.033 7.2E-07 55.3 7.3 59 61-120 213-276 (584)
104 PRK07364 2-octaprenyl-6-methox 95.6 0.99 2.1E-05 42.7 17.0 58 61-121 121-183 (415)
105 PRK12844 3-ketosteroid-delta-1 95.6 0.039 8.5E-07 54.5 7.5 58 61-120 208-270 (557)
106 PRK05732 2-octaprenyl-6-methox 95.6 1.3 2.7E-05 41.6 17.4 55 63-120 114-170 (395)
107 PRK06183 mhpA 3-(3-hydroxyphen 95.6 2.3 5.1E-05 41.8 19.9 58 64-124 116-180 (538)
108 PRK05675 sdhA succinate dehydr 95.5 0.054 1.2E-06 53.7 8.2 59 60-119 125-189 (570)
109 TIGR01320 mal_quin_oxido malat 95.5 0.045 9.7E-07 53.0 7.4 58 61-120 178-241 (483)
110 PRK06481 fumarate reductase fl 95.5 0.047 1E-06 53.3 7.6 57 61-119 190-251 (506)
111 PF06039 Mqo: Malate:quinone o 95.4 0.094 2E-06 49.5 8.9 59 61-121 181-246 (488)
112 PRK09126 hypothetical protein; 95.4 0.81 1.7E-05 42.9 15.6 55 63-120 112-168 (392)
113 PLN02463 lycopene beta cyclase 95.4 2.7 5.8E-05 40.4 20.4 54 62-119 115-169 (447)
114 PRK06175 L-aspartate oxidase; 95.4 0.06 1.3E-06 51.4 7.8 58 60-119 127-189 (433)
115 PRK08020 ubiF 2-octaprenyl-3-m 95.4 1.3 2.8E-05 41.5 16.8 56 62-120 113-170 (391)
116 PRK09078 sdhA succinate dehydr 95.3 0.071 1.5E-06 53.1 8.5 58 61-119 149-212 (598)
117 PRK05329 anaerobic glycerol-3- 95.3 0.065 1.4E-06 50.9 7.7 55 62-118 260-317 (422)
118 PRK08401 L-aspartate oxidase; 95.3 0.059 1.3E-06 52.0 7.6 58 60-120 119-176 (466)
119 PRK07843 3-ketosteroid-delta-1 95.2 0.064 1.4E-06 53.0 7.7 59 60-120 207-270 (557)
120 PRK08958 sdhA succinate dehydr 95.1 0.081 1.8E-06 52.6 8.2 59 60-119 142-206 (588)
121 TIGR01812 sdhA_frdA_Gneg succi 95.0 0.099 2.1E-06 51.8 8.4 57 61-119 129-191 (566)
122 PRK05945 sdhA succinate dehydr 95.0 0.11 2.3E-06 51.7 8.4 58 60-119 134-197 (575)
123 PRK12842 putative succinate de 94.9 0.071 1.5E-06 52.9 7.2 57 61-119 214-275 (574)
124 PRK07573 sdhA succinate dehydr 94.8 0.1 2.2E-06 52.5 7.9 53 65-119 174-232 (640)
125 PRK05257 malate:quinone oxidor 94.8 0.096 2.1E-06 50.9 7.5 58 61-120 183-247 (494)
126 PRK12839 hypothetical protein; 94.7 0.1 2.2E-06 51.7 7.5 59 61-120 214-277 (572)
127 TIGR01811 sdhA_Bsu succinate d 94.6 0.13 2.7E-06 51.4 8.0 58 60-118 128-195 (603)
128 TIGR00292 thiazole biosynthesi 94.6 0.16 3.6E-06 44.7 7.9 58 62-119 101-170 (254)
129 PRK08013 oxidoreductase; Provi 94.6 4.1 8.9E-05 38.4 17.9 59 63-124 113-174 (400)
130 TIGR00551 nadB L-aspartate oxi 94.6 0.09 1.9E-06 51.1 6.8 58 61-120 128-190 (488)
131 PTZ00139 Succinate dehydrogena 94.6 0.16 3.4E-06 50.9 8.5 58 61-119 166-229 (617)
132 PF00732 GMC_oxred_N: GMC oxid 94.5 0.11 2.4E-06 46.8 6.8 60 67-126 199-265 (296)
133 PF01134 GIDA: Glucose inhibit 94.5 0.14 3.1E-06 47.7 7.5 54 61-117 95-150 (392)
134 PRK06452 sdhA succinate dehydr 94.5 0.12 2.5E-06 51.3 7.4 57 61-119 136-198 (566)
135 PLN00128 Succinate dehydrogena 94.5 0.16 3.5E-06 50.9 8.4 58 61-119 187-250 (635)
136 PRK06996 hypothetical protein; 94.5 3.6 7.9E-05 38.7 17.3 53 62-117 116-172 (398)
137 PRK12834 putative FAD-binding 94.5 0.13 2.8E-06 50.8 7.6 58 61-120 148-228 (549)
138 PRK08626 fumarate reductase fl 94.4 0.16 3.5E-06 51.2 8.3 58 60-119 157-220 (657)
139 PRK07057 sdhA succinate dehydr 94.4 0.18 3.9E-06 50.2 8.6 58 61-119 148-211 (591)
140 PRK08243 4-hydroxybenzoate 3-m 94.4 4.5 9.7E-05 38.0 20.4 60 62-124 104-169 (392)
141 PRK06126 hypothetical protein; 94.3 5.8 0.00013 39.1 19.9 55 63-120 128-189 (545)
142 TIGR03364 HpnW_proposed FAD de 94.3 0.1 2.2E-06 48.5 6.3 53 61-120 145-198 (365)
143 PRK07512 L-aspartate oxidase; 94.3 0.094 2E-06 51.3 6.2 58 60-119 135-197 (513)
144 PRK09564 coenzyme A disulfide 94.2 0.18 3.8E-06 48.3 7.9 63 60-125 190-252 (444)
145 PRK13339 malate:quinone oxidor 94.2 0.14 3.1E-06 49.6 7.0 58 61-120 184-248 (497)
146 PRK06263 sdhA succinate dehydr 94.1 0.16 3.4E-06 50.1 7.4 58 61-119 134-197 (543)
147 PRK12837 3-ketosteroid-delta-1 93.9 0.19 4.1E-06 49.2 7.5 57 61-119 173-235 (513)
148 PRK08275 putative oxidoreducta 93.9 0.22 4.8E-06 49.2 8.0 58 61-119 137-200 (554)
149 COG1252 Ndh NADH dehydrogenase 93.8 0.15 3.2E-06 47.8 6.1 54 59-119 207-262 (405)
150 PRK08205 sdhA succinate dehydr 93.8 0.24 5.2E-06 49.3 8.0 59 61-119 140-206 (583)
151 PRK06116 glutathione reductase 93.7 0.26 5.7E-06 47.3 8.0 57 60-118 207-264 (450)
152 PRK07804 L-aspartate oxidase; 93.7 0.2 4.3E-06 49.4 7.1 58 61-119 144-210 (541)
153 PRK08132 FAD-dependent oxidore 93.6 8.1 0.00018 38.1 20.2 61 63-125 127-192 (547)
154 PRK07395 L-aspartate oxidase; 93.4 0.2 4.4E-06 49.4 6.7 59 60-118 133-196 (553)
155 PRK08071 L-aspartate oxidase; 93.2 0.18 3.9E-06 49.3 6.0 56 61-119 130-190 (510)
156 PRK06854 adenylylsulfate reduc 93.1 0.35 7.6E-06 48.4 7.9 57 61-119 132-195 (608)
157 KOG1336 Monodehydroascorbate/f 93.1 0.18 4E-06 47.5 5.4 64 61-125 255-319 (478)
158 PF00070 Pyr_redox: Pyridine n 92.9 0.36 7.8E-06 34.0 5.7 42 58-102 37-78 (80)
159 PRK07251 pyridine nucleotide-d 92.8 0.43 9.4E-06 45.6 7.9 56 61-119 198-253 (438)
160 PRK08010 pyridine nucleotide-d 92.7 0.4 8.7E-06 45.9 7.5 56 61-119 199-254 (441)
161 PRK06416 dihydrolipoamide dehy 92.6 0.52 1.1E-05 45.4 8.2 56 61-119 213-272 (462)
162 TIGR01423 trypano_reduc trypan 92.6 0.49 1.1E-05 45.9 8.0 57 60-118 230-287 (486)
163 PRK04965 NADH:flavorubredoxin 92.6 0.52 1.1E-05 44.1 7.9 56 61-119 183-239 (377)
164 PRK06069 sdhA succinate dehydr 92.6 0.51 1.1E-05 46.9 8.2 57 61-119 137-200 (577)
165 PLN02985 squalene monooxygenas 92.6 11 0.00024 36.9 18.7 56 62-120 148-209 (514)
166 PLN02507 glutathione reductase 92.5 0.54 1.2E-05 45.9 8.1 57 59-118 242-299 (499)
167 PRK05249 soluble pyridine nucl 92.4 0.49 1.1E-05 45.6 7.7 57 60-119 215-272 (461)
168 PRK14694 putative mercuric red 92.3 0.47 1E-05 45.9 7.5 56 61-119 218-273 (468)
169 PRK07803 sdhA succinate dehydr 92.3 0.46 9.9E-06 47.7 7.6 56 61-118 138-212 (626)
170 TIGR01350 lipoamide_DH dihydro 92.2 0.64 1.4E-05 44.8 8.2 56 61-119 211-269 (461)
171 TIGR01424 gluta_reduc_2 glutat 91.8 0.7 1.5E-05 44.3 8.0 56 60-118 206-262 (446)
172 PRK06184 hypothetical protein; 91.8 0.64 1.4E-05 45.3 7.8 55 63-120 111-169 (502)
173 PRK14727 putative mercuric red 91.8 0.59 1.3E-05 45.3 7.5 56 61-119 228-283 (479)
174 TIGR01810 betA choline dehydro 91.7 0.29 6.2E-06 48.1 5.3 50 73-124 206-260 (532)
175 PRK14989 nitrite reductase sub 91.7 0.6 1.3E-05 48.5 7.7 62 62-124 188-250 (847)
176 PF13454 NAD_binding_9: FAD-NA 91.6 0.7 1.5E-05 37.3 6.6 40 75-117 114-155 (156)
177 PRK06753 hypothetical protein; 91.4 12 0.00025 34.7 16.8 54 63-121 100-154 (373)
178 PRK07845 flavoprotein disulfid 91.4 0.69 1.5E-05 44.7 7.5 55 61-118 218-273 (466)
179 TIGR01421 gluta_reduc_1 glutat 91.4 0.94 2E-05 43.5 8.3 59 59-119 205-265 (450)
180 TIGR01176 fum_red_Fp fumarate 91.3 1 2.2E-05 44.9 8.6 58 60-119 131-195 (580)
181 PTZ00306 NADH-dependent fumara 91.3 0.58 1.2E-05 50.5 7.3 59 62-120 545-621 (1167)
182 PLN02927 antheraxanthin epoxid 91.2 13 0.00029 37.6 16.2 53 63-121 196-250 (668)
183 PRK09754 phenylpropionate diox 91.2 0.86 1.9E-05 43.0 7.7 59 62-124 187-246 (396)
184 PLN02172 flavin-containing mon 91.1 0.66 1.4E-05 44.7 6.9 57 61-120 111-174 (461)
185 PRK08163 salicylate hydroxylas 91.0 0.78 1.7E-05 43.1 7.3 56 63-121 111-168 (396)
186 PRK07818 dihydrolipoamide dehy 90.9 0.95 2E-05 43.7 7.9 55 61-118 213-272 (466)
187 COG5044 MRS6 RAB proteins gera 90.9 0.64 1.4E-05 42.6 6.0 84 28-115 195-280 (434)
188 PRK13748 putative mercuric red 90.9 0.79 1.7E-05 45.4 7.4 56 61-119 310-365 (561)
189 PRK05192 tRNA uridine 5-carbox 90.7 0.91 2E-05 45.0 7.5 54 63-119 102-157 (618)
190 PLN02815 L-aspartate oxidase 90.7 0.75 1.6E-05 45.8 7.1 58 61-119 155-222 (594)
191 PRK08641 sdhA succinate dehydr 90.6 1.1 2.5E-05 44.6 8.3 59 60-119 132-200 (589)
192 PF04820 Trp_halogenase: Trypt 90.6 0.95 2.1E-05 43.6 7.5 57 62-120 155-212 (454)
193 PRK09231 fumarate reductase fl 90.5 1.2 2.5E-05 44.4 8.3 57 61-119 133-196 (582)
194 PRK06370 mercuric reductase; V 90.3 1.1 2.3E-05 43.2 7.7 57 61-118 212-270 (463)
195 PRK09897 hypothetical protein; 90.3 1 2.2E-05 44.2 7.4 52 63-117 109-164 (534)
196 TIGR01292 TRX_reduct thioredox 90.3 1.1 2.4E-05 40.1 7.3 54 61-118 57-111 (300)
197 PRK06912 acoL dihydrolipoamide 90.2 1.2 2.6E-05 42.9 7.8 56 61-119 211-268 (458)
198 PRK06327 dihydrolipoamide dehy 90.1 1.2 2.6E-05 43.2 7.8 55 61-118 224-283 (475)
199 TIGR03140 AhpF alkyl hydropero 90.0 1 2.3E-05 44.1 7.4 55 61-118 267-322 (515)
200 TIGR02462 pyranose_ox pyranose 89.8 0.86 1.9E-05 44.7 6.5 62 63-124 216-284 (544)
201 TIGR02053 MerA mercuric reduct 89.8 1.4 3E-05 42.5 8.0 55 61-118 207-265 (463)
202 PRK15317 alkyl hydroperoxide r 89.8 1.2 2.6E-05 43.7 7.5 55 61-118 266-321 (517)
203 KOG2404 Fumarate reductase, fl 89.7 0.72 1.6E-05 41.6 5.3 56 63-120 141-207 (477)
204 COG4716 Myosin-crossreactive a 89.7 1.2 2.5E-05 41.1 6.7 77 18-94 181-260 (587)
205 TIGR00136 gidA glucose-inhibit 89.7 1.1 2.5E-05 44.3 7.2 56 62-119 97-154 (617)
206 KOG1335 Dihydrolipoamide dehyd 89.5 1.5 3.3E-05 40.5 7.3 62 57-120 248-315 (506)
207 TIGR03385 CoA_CoA_reduc CoA-di 89.3 1.3 2.8E-05 42.2 7.3 61 61-125 179-239 (427)
208 PRK09077 L-aspartate oxidase; 89.2 1.8 4E-05 42.6 8.4 59 61-119 138-207 (536)
209 COG1249 Lpd Pyruvate/2-oxoglut 89.1 1.2 2.7E-05 42.7 6.9 58 58-118 211-271 (454)
210 PTZ00052 thioredoxin reductase 89.1 1.4 3.1E-05 42.9 7.5 58 60-120 221-279 (499)
211 TIGR02374 nitri_red_nirB nitri 89.1 1.2 2.5E-05 46.1 7.3 55 62-119 183-238 (785)
212 PRK10262 thioredoxin reductase 89.1 0.86 1.9E-05 41.5 5.7 56 62-119 186-248 (321)
213 PRK07538 hypothetical protein; 89.0 21 0.00045 33.8 19.3 58 63-121 104-167 (413)
214 PTZ00058 glutathione reductase 89.0 1.7 3.6E-05 43.1 7.9 56 61-118 278-335 (561)
215 PRK05976 dihydrolipoamide dehy 89.0 1.8 3.9E-05 41.8 8.1 58 61-119 221-281 (472)
216 KOG2853 Possible oxidoreductas 88.9 10 0.00023 34.7 12.0 80 208-299 401-482 (509)
217 PTZ00318 NADH dehydrogenase-li 88.9 1.1 2.5E-05 42.6 6.6 51 60-117 227-278 (424)
218 PLN02661 Putative thiazole syn 88.8 1.8 3.9E-05 39.9 7.4 54 62-117 173-242 (357)
219 TIGR02061 aprA adenosine phosp 88.7 1.9 4.1E-05 43.1 8.2 59 61-119 126-191 (614)
220 PRK02106 choline dehydrogenase 88.7 0.58 1.3E-05 46.4 4.5 50 73-124 213-267 (560)
221 COG2509 Uncharacterized FAD-de 88.6 0.93 2E-05 42.8 5.4 40 259-301 445-484 (486)
222 TIGR02023 BchP-ChlP geranylger 88.3 22 0.00048 33.2 21.4 54 63-120 94-156 (388)
223 TIGR01438 TGR thioredoxin and 88.2 2.2 4.7E-05 41.5 8.1 56 60-118 219-278 (484)
224 PRK04965 NADH:flavorubredoxin 88.2 1.3 2.7E-05 41.5 6.3 47 68-119 65-111 (377)
225 PRK06115 dihydrolipoamide dehy 88.1 2.2 4.8E-05 41.2 8.1 57 60-118 214-275 (466)
226 KOG0404 Thioredoxin reductase 88.1 0.95 2.1E-05 38.6 4.7 64 53-120 62-125 (322)
227 PF05834 Lycopene_cycl: Lycope 88.0 23 0.0005 33.1 23.0 56 61-120 87-143 (374)
228 PF12831 FAD_oxidored: FAD dep 87.7 0.17 3.6E-06 48.4 0.0 59 66-126 95-157 (428)
229 PLN02546 glutathione reductase 87.4 2.6 5.6E-05 41.7 8.1 59 59-119 291-350 (558)
230 TIGR01316 gltA glutamate synth 86.7 2.1 4.5E-05 41.2 6.9 34 67-101 315-348 (449)
231 PRK12810 gltD glutamate syntha 86.4 1.6 3.5E-05 42.2 6.1 38 261-301 428-465 (471)
232 COG0492 TrxB Thioredoxin reduc 86.4 2.5 5.4E-05 38.3 6.9 58 59-120 59-116 (305)
233 TIGR03169 Nterm_to_SelD pyridi 86.1 2.3 5E-05 39.4 6.8 51 61-118 191-242 (364)
234 PF00743 FMO-like: Flavin-bind 85.2 2.8 6E-05 41.2 7.0 60 61-121 84-152 (531)
235 PRK05335 tRNA (uracil-5-)-meth 85.1 2.9 6.4E-05 39.7 6.8 87 215-310 285-372 (436)
236 PRK06617 2-octaprenyl-6-methox 84.9 3.4 7.3E-05 38.6 7.3 57 62-121 105-162 (374)
237 TIGR03140 AhpF alkyl hydropero 84.7 2.8 6.1E-05 41.0 6.9 52 66-119 392-450 (515)
238 PRK08294 phenol 2-monooxygenas 84.6 48 0.001 33.5 22.8 61 63-124 143-216 (634)
239 PRK11749 dihydropyrimidine deh 84.4 3.1 6.7E-05 40.0 6.9 38 261-301 415-452 (457)
240 TIGR01318 gltD_gamma_fam gluta 84.1 3.7 8.1E-05 39.7 7.3 38 261-301 429-466 (467)
241 TIGR02028 ChlP geranylgeranyl 84.0 38 0.00083 31.9 21.1 40 263-302 269-310 (398)
242 PLN00093 geranylgeranyl diphos 84.0 42 0.0009 32.3 22.0 39 263-301 308-348 (450)
243 PRK11445 putative oxidoreducta 83.4 37 0.0008 31.3 21.3 52 65-120 103-158 (351)
244 PRK07846 mycothione reductase; 83.3 4.5 9.7E-05 38.9 7.5 56 61-120 207-263 (451)
245 PF01134 GIDA: Glucose inhibit 82.8 2.6 5.7E-05 39.5 5.4 76 215-300 311-388 (392)
246 PRK12831 putative oxidoreducta 82.8 3.8 8.3E-05 39.6 6.8 38 261-301 424-461 (464)
247 TIGR03219 salicylate_mono sali 82.7 2.9 6.4E-05 39.5 6.0 54 63-121 107-161 (414)
248 PRK08849 2-octaprenyl-3-methyl 81.7 5 0.00011 37.5 7.1 56 63-121 112-169 (384)
249 PRK13800 putative oxidoreducta 81.6 5.6 0.00012 41.9 8.0 57 61-119 139-205 (897)
250 TIGR03452 mycothione_red mycot 81.5 6.3 0.00014 37.9 7.8 55 61-119 210-265 (452)
251 PF13434 K_oxygenase: L-lysine 81.5 2.9 6.3E-05 38.6 5.3 59 57-117 269-339 (341)
252 PRK12769 putative oxidoreducta 81.3 5 0.00011 40.6 7.3 39 261-302 615-653 (654)
253 PRK13512 coenzyme A disulfide 81.2 4.9 0.00011 38.4 6.9 53 60-119 188-241 (438)
254 TIGR02374 nitri_red_nirB nitri 80.9 3.5 7.5E-05 42.7 6.1 48 67-119 60-108 (785)
255 PRK09754 phenylpropionate diox 80.6 3.9 8.4E-05 38.5 5.9 46 69-119 66-112 (396)
256 PF01946 Thi4: Thi4 family; PD 80.1 7.2 0.00016 33.4 6.6 56 63-119 98-165 (230)
257 COG1251 NirB NAD(P)H-nitrite r 80.1 1.9 4.2E-05 43.1 3.7 50 66-118 192-242 (793)
258 COG2072 TrkA Predicted flavopr 79.9 6.6 0.00014 37.7 7.3 57 63-120 84-145 (443)
259 COG3075 GlpB Anaerobic glycero 79.7 2.8 6E-05 38.1 4.2 61 62-124 259-322 (421)
260 KOG0405 Pyridine nucleotide-di 79.3 5.4 0.00012 36.6 5.9 60 58-118 227-286 (478)
261 PF07992 Pyr_redox_2: Pyridine 79.3 3.3 7.1E-05 34.5 4.5 51 66-118 63-121 (201)
262 PRK09564 coenzyme A disulfide 78.9 4.2 9E-05 38.9 5.6 49 67-118 62-114 (444)
263 PF13434 K_oxygenase: L-lysine 78.8 3.9 8.5E-05 37.7 5.2 55 63-117 97-157 (341)
264 TIGR00136 gidA glucose-inhibit 78.6 7.3 0.00016 38.8 7.2 85 215-311 313-400 (617)
265 TIGR01292 TRX_reduct thioredox 78.6 7.1 0.00015 34.7 6.8 53 63-118 178-237 (300)
266 COG0446 HcaD Uncharacterized N 78.5 6.2 0.00014 36.8 6.7 57 61-119 178-237 (415)
267 TIGR00292 thiazole biosynthesi 78.1 2.8 6E-05 37.0 3.8 40 262-301 211-254 (254)
268 PRK04176 ribulose-1,5-biphosph 77.5 2.9 6.2E-05 36.9 3.8 40 262-301 212-255 (257)
269 KOG1346 Programmed cell death 77.5 2.9 6.2E-05 39.2 3.7 68 56-126 384-456 (659)
270 PRK06475 salicylate hydroxylas 76.5 9.7 0.00021 35.8 7.3 60 62-124 108-173 (400)
271 TIGR01989 COQ6 Ubiquinone bios 76.5 9 0.0002 36.6 7.1 58 63-121 119-185 (437)
272 PRK15317 alkyl hydroperoxide r 76.3 7.7 0.00017 38.0 6.7 53 65-119 390-449 (517)
273 PRK05192 tRNA uridine 5-carbox 76.3 9.9 0.00022 37.9 7.4 83 215-310 315-400 (618)
274 PRK07236 hypothetical protein; 76.3 8.3 0.00018 36.0 6.8 54 63-121 102-156 (386)
275 KOG4405 GDP dissociation inhib 76.0 10 0.00022 35.6 6.7 109 2-115 230-341 (547)
276 COG1635 THI4 Ribulose 1,5-bisp 75.7 2.8 6E-05 35.9 2.9 40 262-301 217-260 (262)
277 PTZ00367 squalene epoxidase; P 75.6 90 0.002 31.1 16.6 36 263-298 336-373 (567)
278 PRK05868 hypothetical protein; 75.5 8.7 0.00019 35.8 6.6 49 73-124 116-166 (372)
279 TIGR03169 Nterm_to_SelD pyridi 75.3 4.9 0.00011 37.2 4.9 52 63-120 56-108 (364)
280 TIGR03143 AhpF_homolog putativ 75.2 8.9 0.00019 38.0 6.9 54 62-119 61-114 (555)
281 TIGR03385 CoA_CoA_reduc CoA-di 75.1 8.5 0.00018 36.6 6.6 47 69-118 52-102 (427)
282 COG1635 THI4 Ribulose 1,5-bisp 75.1 11 0.00025 32.3 6.4 56 63-119 111-178 (262)
283 PRK06467 dihydrolipoamide dehy 74.3 13 0.00028 36.0 7.7 56 60-119 214-274 (471)
284 COG0029 NadB Aspartate oxidase 74.0 9.1 0.0002 36.8 6.2 60 56-117 128-194 (518)
285 PRK12809 putative oxidoreducta 74.0 9.2 0.0002 38.6 6.7 38 261-301 598-635 (639)
286 PRK14989 nitrite reductase sub 73.1 5.6 0.00012 41.5 5.0 48 67-119 65-113 (847)
287 COG0029 NadB Aspartate oxidase 72.7 6.7 0.00015 37.6 5.0 43 259-301 350-398 (518)
288 PRK12778 putative bifunctional 72.3 11 0.00023 39.0 6.8 38 261-301 713-750 (752)
289 PRK06292 dihydrolipoamide dehy 72.2 12 0.00026 36.0 6.8 55 61-118 210-267 (460)
290 PRK13984 putative oxidoreducta 71.9 11 0.00024 37.7 6.7 37 261-301 566-602 (604)
291 COG0445 GidA Flavin-dependent 71.8 5 0.00011 39.0 4.0 55 63-119 102-158 (621)
292 PLN02661 Putative thiazole syn 71.7 4.8 0.0001 37.2 3.7 41 262-302 285-329 (357)
293 TIGR00137 gid_trmFO tRNA:m(5)U 71.6 6.2 0.00013 37.6 4.5 79 214-300 283-362 (433)
294 PRK12770 putative glutamate sy 71.3 13 0.00028 34.3 6.7 26 65-90 214-239 (352)
295 PTZ00153 lipoamide dehydrogena 71.0 19 0.00041 36.5 8.0 59 60-119 352-427 (659)
296 TIGR01372 soxA sarcosine oxida 70.8 16 0.00034 39.1 7.8 58 63-123 353-415 (985)
297 KOG0042 Glycerol-3-phosphate d 70.3 31 0.00067 33.8 8.7 140 66-225 229-376 (680)
298 COG1251 NirB NAD(P)H-nitrite r 69.8 7.3 0.00016 39.3 4.7 55 61-120 59-114 (793)
299 TIGR03862 flavo_PP4765 unchara 69.5 7.1 0.00015 36.5 4.4 39 262-300 335-375 (376)
300 PRK13512 coenzyme A disulfide 68.8 14 0.00029 35.4 6.4 46 71-119 68-117 (438)
301 PRK10262 thioredoxin reductase 68.8 20 0.00043 32.5 7.2 53 63-119 65-117 (321)
302 KOG1298 Squalene monooxygenase 68.1 1.1E+02 0.0024 28.9 12.0 57 62-121 148-211 (509)
303 PRK12769 putative oxidoreducta 67.8 7.8 0.00017 39.2 4.7 46 63-120 379-425 (654)
304 PLN02785 Protein HOTHEAD 67.5 13 0.00028 37.1 6.1 59 66-124 225-295 (587)
305 PRK12831 putative oxidoreducta 67.4 7.7 0.00017 37.5 4.4 45 63-118 193-239 (464)
306 PRK12775 putative trifunctiona 67.4 15 0.00032 39.2 6.8 49 69-118 617-685 (1006)
307 PRK12810 gltD glutamate syntha 65.9 9.2 0.0002 37.0 4.6 46 63-119 195-240 (471)
308 COG2303 BetA Choline dehydroge 65.5 11 0.00025 37.1 5.2 59 64-124 205-271 (542)
309 COG1206 Gid NAD(FAD)-utilizing 65.4 4.5 9.7E-05 36.8 2.1 74 218-298 292-369 (439)
310 TIGR02360 pbenz_hydroxyl 4-hyd 65.2 25 0.00054 33.0 7.3 62 62-125 104-170 (390)
311 TIGR01316 gltA glutamate synth 64.8 9 0.0002 36.8 4.3 39 259-300 411-449 (449)
312 COG0445 GidA Flavin-dependent 64.7 17 0.00037 35.5 5.9 74 215-298 315-394 (621)
313 COG0562 Glf UDP-galactopyranos 64.2 3.6 7.8E-05 37.2 1.3 100 6-121 142-243 (374)
314 TIGR01424 gluta_reduc_2 glutat 63.8 19 0.00042 34.4 6.4 51 63-119 92-142 (446)
315 TIGR01318 gltD_gamma_fam gluta 63.8 12 0.00027 36.1 5.0 48 61-120 191-239 (467)
316 KOG1336 Monodehydroascorbate/f 61.4 17 0.00038 34.7 5.3 50 63-117 129-179 (478)
317 COG3486 IucD Lysine/ornithine 61.1 29 0.00063 32.6 6.6 60 57-118 267-339 (436)
318 PRK12771 putative glutamate sy 60.1 28 0.00061 34.6 6.9 48 70-119 314-380 (564)
319 PRK11749 dihydropyrimidine deh 60.0 14 0.0003 35.6 4.7 47 61-118 190-236 (457)
320 PRK06263 sdhA succinate dehydr 59.1 13 0.00028 36.7 4.3 42 259-300 357-403 (543)
321 PRK12839 hypothetical protein; 58.0 13 0.00028 37.0 4.1 41 261-301 523-569 (572)
322 PRK13984 putative oxidoreducta 57.6 15 0.00032 36.8 4.5 46 62-118 334-379 (604)
323 TIGR03315 Se_ygfK putative sel 57.2 17 0.00036 38.7 4.9 40 260-302 802-841 (1012)
324 TIGR01317 GOGAT_sm_gam glutama 56.6 15 0.00033 35.7 4.3 40 259-301 440-479 (485)
325 PF08491 SE: Squalene epoxidas 56.5 1.4E+02 0.0031 26.6 9.8 43 257-299 123-167 (276)
326 TIGR01421 gluta_reduc_1 glutat 56.4 33 0.00073 32.9 6.6 37 259-298 291-327 (450)
327 TIGR00551 nadB L-aspartate oxi 55.7 16 0.00034 35.5 4.3 43 258-300 341-389 (488)
328 PRK12779 putative bifunctional 54.9 18 0.00039 38.3 4.7 42 259-303 588-629 (944)
329 PRK09231 fumarate reductase fl 54.8 17 0.00036 36.3 4.3 42 259-300 367-414 (582)
330 PRK12809 putative oxidoreducta 54.5 16 0.00035 36.9 4.2 47 62-120 361-408 (639)
331 TIGR01811 sdhA_Bsu succinate d 54.5 38 0.00082 34.0 6.8 43 258-300 378-425 (603)
332 PRK12775 putative trifunctiona 54.1 18 0.00038 38.7 4.6 42 259-303 716-757 (1006)
333 TIGR01816 sdhA_forward succina 52.8 18 0.00039 35.9 4.2 41 261-301 351-397 (565)
334 PRK12770 putative glutamate sy 52.5 25 0.00053 32.5 4.8 39 260-301 312-350 (352)
335 PRK12842 putative succinate de 52.5 18 0.00039 36.0 4.1 41 261-301 522-568 (574)
336 TIGR01812 sdhA_frdA_Gneg succi 52.3 21 0.00046 35.4 4.6 40 261-300 357-402 (566)
337 KOG1399 Flavin-containing mono 52.2 37 0.00079 32.7 5.9 56 62-119 91-153 (448)
338 PRK12778 putative bifunctional 51.9 20 0.00043 37.0 4.5 47 61-118 481-528 (752)
339 PRK12771 putative glutamate sy 51.6 19 0.00041 35.7 4.2 40 259-301 405-444 (564)
340 PLN02546 glutathione reductase 51.5 36 0.00077 33.8 6.0 37 259-298 376-412 (558)
341 PRK07121 hypothetical protein; 51.4 19 0.00042 34.9 4.1 40 261-300 447-491 (492)
342 TIGR02485 CobZ_N-term precorri 51.1 19 0.00041 34.3 3.9 39 261-299 385-429 (432)
343 PRK08641 sdhA succinate dehydr 51.0 24 0.00053 35.2 4.8 42 259-300 364-410 (589)
344 PRK07845 flavoprotein disulfid 51.0 53 0.0012 31.7 7.0 37 259-298 300-336 (466)
345 KOG2415 Electron transfer flav 50.9 22 0.00047 33.6 4.0 55 62-117 184-254 (621)
346 PTZ00318 NADH dehydrogenase-li 50.9 40 0.00087 32.0 6.1 40 261-301 306-348 (424)
347 COG2081 Predicted flavoprotein 50.5 20 0.00043 33.6 3.7 38 262-299 367-406 (408)
348 PRK07573 sdhA succinate dehydr 50.2 39 0.00084 34.2 6.1 37 259-295 415-456 (640)
349 COG3573 Predicted oxidoreducta 49.9 46 0.00099 30.6 5.7 55 61-117 149-226 (552)
350 TIGR01176 fum_red_Fp fumarate 49.7 27 0.00059 34.8 4.9 43 258-300 365-413 (580)
351 PRK06175 L-aspartate oxidase; 49.7 18 0.00039 34.6 3.5 42 259-300 340-387 (433)
352 PRK12779 putative bifunctional 49.3 55 0.0012 34.8 7.2 48 71-118 494-561 (944)
353 PRK12844 3-ketosteroid-delta-1 49.3 22 0.00047 35.3 4.1 41 261-301 505-551 (557)
354 PRK12814 putative NADPH-depend 49.1 23 0.0005 35.9 4.4 40 259-301 462-501 (652)
355 PRK06116 glutathione reductase 48.2 27 0.00059 33.4 4.6 36 260-298 292-327 (450)
356 PRK12834 putative FAD-binding 47.8 20 0.00043 35.4 3.6 38 261-298 502-548 (549)
357 PRK09078 sdhA succinate dehydr 47.6 24 0.00053 35.3 4.2 40 261-300 383-428 (598)
358 PRK06134 putative FAD-binding 47.3 20 0.00043 35.7 3.6 41 261-301 526-572 (581)
359 TIGR01317 GOGAT_sm_gam glutama 47.2 51 0.0011 32.0 6.3 48 69-117 344-412 (485)
360 PRK06452 sdhA succinate dehydr 47.2 31 0.00066 34.3 4.8 41 260-300 356-403 (566)
361 PRK12835 3-ketosteroid-delta-1 46.6 27 0.00059 34.8 4.4 41 261-301 525-571 (584)
362 PRK12845 3-ketosteroid-delta-1 46.6 22 0.00047 35.3 3.7 38 261-298 520-563 (564)
363 PLN02852 ferredoxin-NADP+ redu 46.5 25 0.00054 34.3 3.9 41 261-303 384-424 (491)
364 PRK09853 putative selenate red 46.3 31 0.00067 36.7 4.8 40 260-302 804-843 (1019)
365 PRK09077 L-aspartate oxidase; 46.0 30 0.00065 34.1 4.5 42 259-300 362-409 (536)
366 PRK07803 sdhA succinate dehydr 45.4 25 0.00054 35.5 3.9 41 260-300 402-447 (626)
367 PLN00128 Succinate dehydrogena 45.0 31 0.00067 34.9 4.5 40 261-300 421-466 (635)
368 PRK07843 3-ketosteroid-delta-1 44.4 24 0.00053 34.9 3.6 39 261-299 512-556 (557)
369 PRK08205 sdhA succinate dehydr 43.9 31 0.00067 34.4 4.3 40 261-300 373-418 (583)
370 PRK08958 sdhA succinate dehydr 43.8 35 0.00075 34.1 4.6 40 261-300 378-423 (588)
371 PF03486 HI0933_like: HI0933-l 43.6 19 0.00042 34.1 2.7 33 262-294 374-408 (409)
372 PRK05675 sdhA succinate dehydr 43.2 35 0.00077 33.9 4.6 40 261-300 360-405 (570)
373 PRK08275 putative oxidoreducta 42.5 30 0.00064 34.3 3.9 41 258-300 364-404 (554)
374 PRK05329 anaerobic glycerol-3- 42.4 36 0.00077 32.5 4.3 37 261-300 378-420 (422)
375 PRK05945 sdhA succinate dehydr 42.4 36 0.00078 33.9 4.5 40 261-300 368-413 (575)
376 PRK10157 putative oxidoreducta 42.0 39 0.00084 32.2 4.5 41 263-303 294-338 (428)
377 PLN02815 L-aspartate oxidase 42.0 37 0.0008 34.0 4.5 42 258-299 385-432 (594)
378 TIGR03143 AhpF_homolog putativ 41.9 33 0.00072 34.0 4.1 41 260-302 270-310 (555)
379 PRK06481 fumarate reductase fl 41.7 30 0.00065 33.8 3.7 40 261-300 459-503 (506)
380 PRK12837 3-ketosteroid-delta-1 41.7 23 0.0005 34.7 3.0 38 261-298 467-510 (513)
381 PTZ00139 Succinate dehydrogena 41.5 31 0.00068 34.7 3.9 40 261-300 400-445 (617)
382 PRK08274 tricarballylate dehyd 41.2 33 0.00071 33.0 3.9 39 261-299 416-460 (466)
383 TIGR01372 soxA sarcosine oxida 40.8 38 0.00081 36.3 4.5 38 261-302 436-473 (985)
384 PRK08401 L-aspartate oxidase; 40.6 47 0.001 32.0 4.9 41 259-299 319-365 (466)
385 PRK12843 putative FAD-binding 40.4 39 0.00084 33.7 4.4 40 261-300 527-572 (578)
386 PRK08071 L-aspartate oxidase; 40.3 39 0.00085 33.1 4.3 41 259-299 341-387 (510)
387 PRK14727 putative mercuric red 40.0 38 0.00082 32.8 4.1 37 259-298 309-345 (479)
388 PRK05249 soluble pyridine nucl 39.9 41 0.00089 32.3 4.4 36 260-298 299-334 (461)
389 PRK07512 L-aspartate oxidase; 38.8 46 0.001 32.6 4.6 42 259-300 350-397 (513)
390 COG1053 SdhA Succinate dehydro 38.7 45 0.00098 33.1 4.4 58 61-119 138-202 (562)
391 TIGR01423 trypano_reduc trypan 38.5 50 0.0011 32.1 4.7 37 259-298 314-350 (486)
392 PRK06327 dihydrolipoamide dehy 37.8 1.1E+02 0.0023 29.6 6.9 37 259-298 310-346 (475)
393 PF03275 GLF: UDP-galactopyran 37.7 3.1 6.8E-05 35.1 -3.2 93 13-121 1-95 (204)
394 TIGR01438 TGR thioredoxin and 37.6 51 0.0011 32.0 4.6 38 259-298 306-343 (484)
395 PRK13748 putative mercuric red 37.5 44 0.00095 33.0 4.3 37 259-298 391-427 (561)
396 PLN02507 glutathione reductase 37.3 52 0.0011 32.1 4.6 37 259-298 326-362 (499)
397 COG1249 Lpd Pyruvate/2-oxoglut 37.3 47 0.001 32.0 4.2 36 260-298 299-334 (454)
398 PRK06292 dihydrolipoamide dehy 37.1 46 0.00099 31.9 4.2 37 259-298 294-330 (460)
399 PRK06069 sdhA succinate dehydr 36.9 53 0.0011 32.7 4.7 39 262-300 370-414 (577)
400 COG0492 TrxB Thioredoxin reduc 36.7 44 0.00096 30.3 3.7 41 259-301 261-301 (305)
401 TIGR01789 lycopene_cycl lycope 35.4 68 0.0015 29.9 4.9 38 75-118 100-137 (370)
402 PRK08626 fumarate reductase fl 35.4 1.6E+02 0.0035 30.0 7.9 42 259-300 381-429 (657)
403 PRK14694 putative mercuric red 35.3 54 0.0012 31.6 4.4 37 259-298 298-334 (468)
404 PTZ00052 thioredoxin reductase 34.8 57 0.0012 31.9 4.4 37 260-298 304-340 (499)
405 TIGR00275 flavoprotein, HI0933 34.7 33 0.00072 32.4 2.8 32 262-293 366-399 (400)
406 PRK07818 dihydrolipoamide dehy 34.4 59 0.0013 31.3 4.5 37 259-298 299-335 (466)
407 PRK06115 dihydrolipoamide dehy 34.0 50 0.0011 31.8 3.9 38 259-299 301-338 (466)
408 PRK07395 L-aspartate oxidase; 33.9 46 0.001 33.0 3.7 40 259-298 356-401 (553)
409 PRK05976 dihydrolipoamide dehy 33.5 1.3E+02 0.0029 29.0 6.8 36 260-298 307-342 (472)
410 KOG3923 D-aspartate oxidase [A 33.5 2.1E+02 0.0045 26.0 7.2 79 212-301 257-338 (342)
411 PRK06370 mercuric reductase; V 33.3 63 0.0014 31.1 4.5 38 259-299 297-334 (463)
412 PRK06467 dihydrolipoamide dehy 32.9 56 0.0012 31.6 4.1 37 259-298 300-336 (471)
413 PRK07804 L-aspartate oxidase; 32.8 47 0.001 32.8 3.6 42 259-300 366-413 (541)
414 PRK07057 sdhA succinate dehydr 31.3 57 0.0012 32.6 3.9 39 262-300 382-426 (591)
415 PRK06854 adenylylsulfate reduc 31.3 74 0.0016 32.0 4.7 42 258-300 390-431 (608)
416 TIGR03452 mycothione_red mycot 31.2 62 0.0013 31.1 4.0 38 259-299 291-328 (452)
417 PRK06416 dihydrolipoamide dehy 30.3 66 0.0014 30.9 4.1 37 259-298 297-333 (462)
418 PRK13800 putative oxidoreducta 30.2 55 0.0012 34.6 3.7 40 259-300 370-409 (897)
419 PRK09853 putative selenate red 30.0 1.5E+02 0.0032 31.9 6.6 50 73-125 719-785 (1019)
420 COG3634 AhpF Alkyl hydroperoxi 30.0 87 0.0019 29.0 4.4 58 61-118 266-324 (520)
421 COG1252 Ndh NADH dehydrogenase 29.9 1E+02 0.0022 29.2 5.1 53 62-120 58-112 (405)
422 KOG4716 Thioredoxin reductase 29.9 76 0.0017 29.3 4.0 63 57-121 234-302 (503)
423 COG1148 HdrA Heterodisulfide r 29.7 1.2E+02 0.0027 29.4 5.5 41 260-304 508-548 (622)
424 PTZ00306 NADH-dependent fumara 29.6 67 0.0015 35.1 4.3 42 261-302 858-904 (1167)
425 TIGR03378 glycerol3P_GlpB glyc 28.8 50 0.0011 31.4 2.8 33 262-297 381-419 (419)
426 TIGR01350 lipoamide_DH dihydro 27.9 79 0.0017 30.3 4.2 37 260-299 296-332 (461)
427 PRK06444 prephenate dehydrogen 27.5 1.5E+02 0.0034 24.9 5.3 39 63-126 12-50 (197)
428 TIGR02053 MerA mercuric reduct 27.2 92 0.002 29.9 4.5 38 259-299 292-329 (463)
429 KOG4716 Thioredoxin reductase 27.0 67 0.0014 29.6 3.1 38 260-299 328-365 (503)
430 KOG2311 NAD/FAD-utilizing prot 26.4 1E+02 0.0023 29.9 4.4 43 76-119 140-186 (679)
431 PRK12814 putative NADPH-depend 26.0 2.2E+02 0.0047 29.0 7.0 45 72-118 372-436 (652)
432 PRK07846 mycothione reductase; 25.7 1E+02 0.0023 29.5 4.5 38 259-299 288-325 (451)
433 KOG2311 NAD/FAD-utilizing prot 25.6 1.1E+02 0.0023 29.8 4.3 53 215-273 344-398 (679)
434 PF15647 Tox-REase-3: Restrict 25.3 90 0.002 22.9 2.9 27 52-82 81-107 (109)
435 PF14542 Acetyltransf_CG: GCN5 25.0 55 0.0012 22.8 1.8 27 57-83 37-63 (78)
436 PF03807 F420_oxidored: NADP o 25.0 56 0.0012 23.3 2.0 59 62-126 9-80 (96)
437 PF00016 RuBisCO_large: Ribulo 24.5 37 0.00081 30.8 1.1 63 262-334 242-305 (309)
438 KOG2960 Protein involved in th 23.3 1.1E+02 0.0024 26.2 3.6 42 261-302 274-319 (328)
439 PRK06912 acoL dihydrolipoamide 23.1 1.1E+02 0.0024 29.4 4.2 36 260-298 294-329 (458)
440 PF02006 DUF137: Protein of un 22.8 1.1E+02 0.0023 25.1 3.2 49 63-115 45-97 (178)
441 TIGR02061 aprA adenosine phosp 22.5 1E+02 0.0023 31.0 3.9 39 259-299 402-441 (614)
442 PRK08010 pyridine nucleotide-d 22.0 1.2E+02 0.0027 28.8 4.2 37 259-298 280-316 (441)
443 COG1445 FrwB Phosphotransferas 20.0 79 0.0017 24.3 1.9 45 64-119 21-68 (122)
No 1
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=9.7e-36 Score=287.00 Aligned_cols=297 Identities=20% Similarity=0.260 Sum_probs=237.7
Q ss_pred ccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcc
Q 019274 2 IQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDG 81 (343)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~ 81 (343)
++++.+++++++||+|++.++++++++++|+++++.+|..+. ....++++.|++||+.+.|+++++++|+++|++|+++
T Consensus 237 ~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~-~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~ 315 (569)
T PLN02487 237 TSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA-TKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLR 315 (569)
T ss_pred HHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh-hcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeC
Confidence 456667789999999999999999999999999999986532 2445677899999987679999999999999999999
Q ss_pred eeeeEEEecCC-CC--eEEEEEE--C--CeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEec
Q 019274 82 RRVTDFIYDEE-RC--CISDVVC--G--KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFD 154 (343)
Q Consensus 82 ~~V~~I~~~~~-~g--~v~~V~~--~--g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~ 154 (343)
++|++|..+++ +| +|++|++ + ++++.||.||+|+|++.+.+|+++.. +..+.+..+.++.+.++++++|+|+
T Consensus 316 ~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~-~~~~~~~~l~~L~~~pi~tv~L~~d 394 (569)
T PLN02487 316 WGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQW-REYEFFDNIYKLVGVPVVTVQLRYN 394 (569)
T ss_pred CceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchh-hccHHHhHHhcCCCeeEEEEEEEec
Confidence 99999999742 13 4788888 3 34689999999999999999998753 2234577888898999999999999
Q ss_pred cCCCCCCCcc------eeecCCC-----Cccce-Eeeccccc-ccc-CCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHH
Q 019274 155 KKVTVPNVSN------ACSGFGD-----SLAWT-FFDLNKIY-DEH-KDDSATVIQADFYHANELMPLKDDQVVAKAVSY 220 (343)
Q Consensus 155 ~~~~~~~~~~------~~~~~~~-----~~~~~-~~d~~~~~-~~~-~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~ 220 (343)
+++..+.+-+ .+.+++. ...|. +++..... ..| ....++++.+++++++++..++++++++.++++
T Consensus 395 ~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~ 474 (569)
T PLN02487 395 GWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQ 474 (569)
T ss_pred ccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHHHHHHHH
Confidence 8765432110 1223321 11232 23422111 123 223457888888888888899999999999999
Q ss_pred HhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHh
Q 019274 221 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 221 L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~ 300 (343)
|.++||.+.+.++.+..+.+.+++++...||+...||.+.|+++|||+||||+.++|| ++||||+.||..||+.|++.-
T Consensus 475 L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yP-at~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 475 VLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYI-DSMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred HHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCc-chHHHHHHHHHHHHHHHHHHh
Confidence 9999999876567888889999999999999988889999999999999999999999 799999999999999998865
Q ss_pred C
Q 019274 301 G 301 (343)
Q Consensus 301 ~ 301 (343)
+
T Consensus 554 ~ 554 (569)
T PLN02487 554 E 554 (569)
T ss_pred h
Confidence 4
No 2
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=2.6e-34 Score=274.88 Aligned_cols=294 Identities=18% Similarity=0.268 Sum_probs=229.1
Q ss_pred CccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEc
Q 019274 1 MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLD 80 (343)
Q Consensus 1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~ 80 (343)
|++++.++.++++||+|++.++++.+++++|+++++.+++.+. ....++.+.+++||++..+.++|.+.|+++|++|++
T Consensus 160 l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~-~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~ 238 (474)
T TIGR02732 160 FLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFA-AKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFHL 238 (474)
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEEC
Confidence 3567777889999999999999999999999999999887543 345567888999998777899999999999999999
Q ss_pred ceeeeEEEecCC-CC--eEEEEEEC-C---eEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEe
Q 019274 81 GRRVTDFIYDEE-RC--CISDVVCG-K---ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWF 153 (343)
Q Consensus 81 ~~~V~~I~~~~~-~g--~v~~V~~~-g---~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~ 153 (343)
+++|++|..+++ ++ +|++|+++ | +++.||+||+|+|++.+.+|+++... ..+....+.++.+.++++++++|
T Consensus 239 ~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~-~~~~~~~l~~l~~~pi~~v~l~~ 317 (474)
T TIGR02732 239 RHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWR-QFEEFDNIYKLDAVPVATVQLRY 317 (474)
T ss_pred CCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhh-cCHHHhhHhcCCCCCeEEEEEEe
Confidence 999999998641 02 37777774 3 46899999999999999999987421 23455677888899999999999
Q ss_pred ccCCCCCCCcc---e---eecCC-----CCccce-Eeecccccc-ccCC-CCCeEEEEEeeCCCCCCCCCHHHHHHHHHH
Q 019274 154 DKKVTVPNVSN---A---CSGFG-----DSLAWT-FFDLNKIYD-EHKD-DSATVIQADFYHANELMPLKDDQVVAKAVS 219 (343)
Q Consensus 154 ~~~~~~~~~~~---~---~~~~~-----~~~~~~-~~d~~~~~~-~~~~-~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~ 219 (343)
++++..+.+.+ . ..+++ ....|. +++.....+ .|.. ..+.++.++++.+.++.+++++++++.+++
T Consensus 318 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 397 (474)
T TIGR02732 318 DGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAKRVDK 397 (474)
T ss_pred ccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHHHHHH
Confidence 98765432101 0 11111 111122 223221112 2422 234556677777777778899999999999
Q ss_pred HHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHH
Q 019274 220 YLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 297 (343)
Q Consensus 220 ~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il 297 (343)
+|+++||.+.+.++++..+.+.+++++.+.||+..++|.++|+++|||+||||+.++|| ++||||+.||+.||+.|+
T Consensus 398 ~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~p-as~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 398 QVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYI-DSMEGATLSGRQAAAAIL 474 (474)
T ss_pred HHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCch-HHHhHHHHHHHHHHHHhC
Confidence 99999998766667777788899999999999988899999999999999999999999 799999999999999874
No 3
>PLN02612 phytoene desaturase
Probab=100.00 E-value=1.5e-33 Score=274.63 Aligned_cols=296 Identities=18% Similarity=0.250 Sum_probs=234.7
Q ss_pred CccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEc
Q 019274 1 MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLD 80 (343)
Q Consensus 1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~ 80 (343)
|++.++++++.+.+|+|++.++++.+++++|+..++..+..+ +....++...++.|+..+.|+++|++.|++.|++|++
T Consensus 249 l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~-l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l 327 (567)
T PLN02612 249 MRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRF-LQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRL 327 (567)
T ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHH-HhccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEe
Confidence 356788999999999999999999999999999999888765 3445567777888886578999999999999999999
Q ss_pred ceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEeccCCCC
Q 019274 81 GRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTV 159 (343)
Q Consensus 81 ~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~ 159 (343)
|++|++|..+++ +++++|++. |++++||+||+|+|+..+.+|++.... +.++.+.++++.+.++++++++|+++++.
T Consensus 328 ~~~V~~I~~~~~-g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~-~~~~~~~l~~l~~~~v~~v~l~~dr~~~~ 405 (567)
T PLN02612 328 NSRIKKIELNDD-GTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWK-EIPYFKKLDKLVGVPVINVHIWFDRKLKN 405 (567)
T ss_pred CCeeeEEEECCC-CcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhc-CcHHHHHHHhcCCCCeEEEEEEECcccCC
Confidence 999999998664 666777775 678999999999999988888876432 23455666778888999999999999763
Q ss_pred CCCcceeecCCCCccceEeeccccccccCCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHHHhhhcccCC-----CCcee
Q 019274 160 PNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFS-----TATVM 234 (343)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~-----~~~~~ 234 (343)
+..+ .++.-+ .....+++.+..++.|.+++.+++.+.+..+.+|.+++++++++.++++|+++||+.. ..+++
T Consensus 406 ~~~~-~~~~~~-~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~ 483 (567)
T PLN02612 406 TYDH-LLFSRS-PLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKIL 483 (567)
T ss_pred CCCc-eeecCC-CCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEE
Confidence 3222 222211 1112234555544555555667776666667788889999999999999999999762 12455
Q ss_pred eeEEEecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274 235 DHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 302 (343)
Q Consensus 235 ~~~~~r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~ 302 (343)
...+.+.|.+++.+.|+...++|.+++|++||||||||+.++|+ ++|+||+.||++||+.|+++++.
T Consensus 484 ~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~-~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 484 KYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYL-ASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred EEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCch-hhHHHHHHHHHHHHHHHHHHhcc
Confidence 55566788888888888777788888999999999999988999 69999999999999999999875
No 4
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=1.1e-30 Score=247.37 Aligned_cols=280 Identities=26% Similarity=0.329 Sum_probs=211.1
Q ss_pred ccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcc
Q 019274 2 IQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDG 81 (343)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~ 81 (343)
+++++++++++.+++|++.++++.+++++|+.+++..+...+........+.+|+||+++.+.++|++.|++.|++|++|
T Consensus 138 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~ 217 (419)
T TIGR03467 138 QAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLG 217 (419)
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcC
Confidence 45677999999999999999999999999999998887654322223445788999976656677999999999999999
Q ss_pred eeeeEEEecCCCCeEEEE-EECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEeccCCCCC
Q 019274 82 RRVTDFIYDEERCCISDV-VCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVP 160 (343)
Q Consensus 82 ~~V~~I~~~~~~g~v~~V-~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~ 160 (343)
++|++|..++ +++..+ ..+|++++||+||+|+|++++.+|+++. ...+.+.++++.++.++++.++++++.+
T Consensus 218 ~~V~~i~~~~--~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~-----~~~~~l~~~~~~~~~~v~l~~~~~~~~~ 290 (419)
T TIGR03467 218 TRVRSIEANA--GGIRALVLSGGETLPADAVVLAVPPRHAASLLPGE-----DLGALLTALGYSPITTVHLRLDRAVRLP 290 (419)
T ss_pred CeeeEEEEcC--CcceEEEecCCccccCCEEEEcCCHHHHHHhCCCc-----hHHHHHhhcCCcceEEEEEEeCCCcCCC
Confidence 9999999887 444322 2356788999999999999999987652 2345677888999999999999988644
Q ss_pred CCcceeecCC-CCccceEeeccccccccCCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEE
Q 019274 161 NVSNACSGFG-DSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIR 239 (343)
Q Consensus 161 ~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~ 239 (343)
.+ ++++. ....| +++.+... +...++.+....+.++..++++++.+.++++|+++||......+++..+.
T Consensus 291 ~~---~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 361 (419)
T TIGR03467 291 AP---MVGLVGGLAQW-LFDRGQLA-----GEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVI 361 (419)
T ss_pred CC---eeeecCCceeE-EEECCcCC-----CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEE
Confidence 33 22221 12223 34432211 12233333333455667788999999999999999997643356666778
Q ss_pred ecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 240 RFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 240 r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
+|+++.+.+.+|....+|...++++|||||||++.++++ ++||||+.||.+||++|++
T Consensus 362 ~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~-~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 362 KEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTATGWP-ATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred EccCCccccCCcccccCCCCCCCcCCEEEecccccCCCc-chHHHHHHHHHHHHHHHhC
Confidence 888888777777655567666788999999999998888 6999999999999999874
No 5
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.98 E-value=6e-30 Score=244.88 Aligned_cols=289 Identities=22% Similarity=0.348 Sum_probs=215.6
Q ss_pred ccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcc
Q 019274 2 IQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDG 81 (343)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~ 81 (343)
++.++++++.+.+++|++.++++.+++++|+.+++..+..++ ....+....+..|+....++++|.+.+++.|++|++|
T Consensus 155 ~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~-~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~ 233 (453)
T TIGR02731 155 RKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFL-QERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLN 233 (453)
T ss_pred HHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-hcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCC
Confidence 467889999999999999999999999999999998887754 3233444455666655679999999999999999999
Q ss_pred eeeeEEEecCCCCeEEEEEEC-Ce-----EEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEecc
Q 019274 82 RRVTDFIYDEERCCISDVVCG-KE-----TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDK 155 (343)
Q Consensus 82 ~~V~~I~~~~~~g~v~~V~~~-g~-----~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~ 155 (343)
++|++|..+++ |++++|++. ++ ++.||.||+|+|++.+.+|++... +.....+.+.++++.+++++++++++
T Consensus 234 ~~V~~I~~~~~-~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~-~~~~~~~~~~~~~~~~~~~v~l~~~~ 311 (453)
T TIGR02731 234 SRLKEIVLNED-GSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPW-KQMPFFQKLNGLEGVPVINVHIWFDR 311 (453)
T ss_pred CeeEEEEECCC-CCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhh-hcCHHHHHhhcCCCCcEEEEEEEEcc
Confidence 99999987654 677788874 43 789999999999999888986542 11234566677788899999999999
Q ss_pred CCCCCCCcceeecCCCCccceEeeccccccccCCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHHHhhhcccC----CCC
Q 019274 156 KVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDF----STA 231 (343)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~----~~~ 231 (343)
+++.. ...++..+... ...++.+.....+.++++.++.+.+...+.+.+++++++.+.++++|+++||+. ...
T Consensus 312 ~~~~~--~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~ 388 (453)
T TIGR02731 312 KLTTV--DHLLFSRSPLL-SVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKADSPA 388 (453)
T ss_pred ccCCC--CceeeeCCCcc-eeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCc
Confidence 87532 22222222111 112232222222333455666654445566777899999999999999999853 122
Q ss_pred ceeeeEEEecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHH
Q 019274 232 TVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 297 (343)
Q Consensus 232 ~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il 297 (343)
+++...+.+.+.+.+.+.||...++|...+|++||||||+++.++|+ ++||||+.||++||+.|.
T Consensus 389 ~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~-g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 389 KILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYL-ASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred eEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCccc-ccHHHHHHHHHHHHHHhC
Confidence 45566666788887767788655677777899999999999998999 699999999999999873
No 6
>PRK07233 hypothetical protein; Provisional
Probab=99.96 E-value=1.6e-27 Score=226.99 Aligned_cols=287 Identities=17% Similarity=0.170 Sum_probs=209.3
Q ss_pred CCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcC--CCceeEeecCCCchhhhHHHHHHHHHcCCeEEcce
Q 019274 5 GCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ--KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGR 82 (343)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~--~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~ 82 (343)
.++++.++++++|++.++++.+++++|+.+++..+........ ....+.+|+||+ +.|+++|++.+++.|++|++++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~~~l~~~g~~v~~~~ 219 (434)
T PRK07233 141 WSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGF-ATLIDALAEAIEARGGEIRLGT 219 (434)
T ss_pred hcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCH-HHHHHHHHHHHHhcCceEEeCC
Confidence 4578899999999999999999999999988776654321111 122467899995 7799999999999999999999
Q ss_pred eeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEeccCCCCCCC
Q 019274 83 RVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNV 162 (343)
Q Consensus 83 ~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~ 162 (343)
+|++|..++ ++++.+..++++++||+||+|+|+..+.+|+++.. ....+.++++.+.+..++++.++++.. + .
T Consensus 220 ~V~~i~~~~--~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~ 292 (434)
T PRK07233 220 PVTSVVIDG--GGVTGVEVDGEEEDFDAVISTAPPPILARLVPDLP---ADVLARLRRIDYQGVVCMVLKLRRPLT-D-Y 292 (434)
T ss_pred CeeEEEEcC--CceEEEEeCCceEECCEEEECCCHHHHHhhcCCCc---HHHHhhhcccCccceEEEEEEecCCCC-C-C
Confidence 999999877 56666666677899999999999999988885421 234456677888888899999998764 2 1
Q ss_pred cceeecCCC-CccceEeeccccccccCCCCCeEEEEE-eeC-CCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEE
Q 019274 163 SNACSGFGD-SLAWTFFDLNKIYDEHKDDSATVIQAD-FYH-ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIR 239 (343)
Q Consensus 163 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~i~~~-~~~-~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~ 239 (343)
+.... .+. .....++..+...+...+++.+++.+. +.. ...+..++++++++.++++|++++|++....++...+.
T Consensus 293 ~~~~~-~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~ 371 (434)
T PRK07233 293 YWLNI-NDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRIS 371 (434)
T ss_pred ceeee-cCCCCCcceEEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEE
Confidence 11111 111 111112333333222221344443332 222 22334568899999999999999998754467788889
Q ss_pred ecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274 240 RFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 240 r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
+|+.+.+.+.||....++...++++|||||||+....++ ++|++|+.||..||++|++.++
T Consensus 372 r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~-~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 372 RAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPED-RSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred EeccccccccCchhhcCCCcccCcCCEEEeCCcccCCcc-CchhHHHHHHHHHHHHHhhhhc
Confidence 999999988888666667777788999999996443344 5899999999999999998765
No 7
>PRK07208 hypothetical protein; Provisional
Probab=99.93 E-value=6.3e-24 Score=204.75 Aligned_cols=299 Identities=16% Similarity=0.152 Sum_probs=204.8
Q ss_pred CCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHH---------HHHHHhc---------C-C--CceeEeecCCCchh
Q 019274 4 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGIL---------YFIILAH---------Q-K--NFDLVWCRGTLREK 62 (343)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l---------~~~~~~~---------~-~--~~~~~~~~gG~~~~ 62 (343)
+++++++++.+++|++.++|+.+++++|+.+++..+ ...+... . . ...+.+|+||+ +.
T Consensus 141 ~~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~-~~ 219 (479)
T PRK07208 141 NRFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGP-GQ 219 (479)
T ss_pred HhhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCc-ch
Confidence 478999999999999999999999999998754322 2111110 0 0 13567899996 56
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---Ce--EEecCEEEEeeChhhHHHhhhhhcccCchhHHh
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGISTLQELIKNSILCNREEFLK 137 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~--~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~ 137 (343)
|+++|++.+++.|++|++|++|++|..+++ +.++.+..+ |+ ++.||+||+|+|+..+.+++.+. ++ ....+.
T Consensus 220 l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~-~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~-~~-~~~~~~ 296 (479)
T PRK07208 220 LWETAAEKLEALGGKVVLNAKVVGLHHDGD-GRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPP-PP-PEVRAA 296 (479)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEEcCC-cEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCC-CC-HHHHHH
Confidence 999999999999999999999999999874 444445442 32 58999999999999998887643 22 344556
Q ss_pred hccCcccceEEEEEEeccCCCCCCCcceeec-CCCCccceEeeccccccccCCCCC-eEEEEEee--CCCCCCCCCHHHH
Q 019274 138 VLNLASIDVVSVKLWFDKKVTVPNVSNACSG-FGDSLAWTFFDLNKIYDEHKDDSA-TVIQADFY--HANELMPLKDDQV 213 (343)
Q Consensus 138 ~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~-~~i~~~~~--~~~~~~~~~~~e~ 213 (343)
++.+.+.++.+++++++++...+. ...++. .+... ..+...+...+...+++. ..+.+.++ ...+...++++++
T Consensus 297 ~~~l~~~~~~~v~l~~~~~~~~~~-~~~~~~~~~~~~-~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel 374 (479)
T PRK07208 297 AAGLRYRDFITVGLLVKELNLFPD-NWIYIHDPDVKV-GRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDL 374 (479)
T ss_pred HhCCCcceeEEEEEEecCCCCCCC-ceEEecCCCCcc-ceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHH
Confidence 677888888899999998754322 111111 11000 001111111122222233 33333332 3344557789999
Q ss_pred HHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCC---CCCCCCCeEEeeccccCCCCCccchHHHHHHH
Q 019274 214 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR---GFTSFPNLFMAGDWITTRHGSWSQERSYVTGL 290 (343)
Q Consensus 214 ~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~---~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~ 290 (343)
++.++++|.++.+ +.+.+++..++.+|+.++|.|.+++....+. ..++.+|||++|++....+ .+|++|+.||.
T Consensus 375 ~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~--~~~d~a~~sg~ 451 (479)
T PRK07208 375 IALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY--NNQDHSMLTAM 451 (479)
T ss_pred HHHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc--CChhHHHHHHH
Confidence 9999999999854 3233788888999999999999886543221 2246789999998853233 58999999999
Q ss_pred HHHHHHHHHhCCCCcccccccCCC
Q 019274 291 EAANRVVDYLGDGSFSKIIPVEED 314 (343)
Q Consensus 291 ~aA~~il~~~~~~~~~~~~~~~~~ 314 (343)
.+|+.|++.. .++++||++.|
T Consensus 452 ~~a~~i~~~~---~~~~~~~~~~~ 472 (479)
T PRK07208 452 LAVENIIAGE---TKHDIWQVNTE 472 (479)
T ss_pred HHHHHHhcCC---ccCCceEeccc
Confidence 9999998873 34578998774
No 8
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.93 E-value=4.5e-24 Score=198.39 Aligned_cols=278 Identities=18% Similarity=0.212 Sum_probs=200.4
Q ss_pred ccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcC------------C----CceeEeecCCCchhhhH
Q 019274 2 IQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ------------K----NFDLVWCRGTLREKIFE 65 (343)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~------------~----~~~~~~~~gG~~~~l~~ 65 (343)
-++++|+++++++++|++.++|+.+++++|+....+.+....-... . ...+++++||+ ++|++
T Consensus 141 ~r~~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~-~~l~~ 219 (444)
T COG1232 141 IRRRFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGL-QSLIE 219 (444)
T ss_pred HHHHHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccH-HHHHH
Confidence 3678999999999999999999999999999966665544311100 0 12467789996 67999
Q ss_pred HHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccc
Q 019274 66 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASID 145 (343)
Q Consensus 66 ~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~ 145 (343)
+|++.++.. |+++++|++|..++. + .+.+..+|+.++||.||+|+|++.+.+++++.. ..+.+.++.+.+
T Consensus 220 al~~~l~~~---i~~~~~V~~i~~~~~-~-~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~~-----~~~~~~~~~~~s 289 (444)
T COG1232 220 ALAEKLEAK---IRTGTEVTKIDKKGA-G-KTIVDVGGEKITADGVISTAPLPELARLLGDEA-----VSKAAKELQYTS 289 (444)
T ss_pred HHHHHhhhc---eeecceeeEEEEcCC-c-cEEEEcCCceEEcceEEEcCCHHHHHHHcCCcc-----hhhhhhhccccc
Confidence 999999764 999999999999863 3 345555678899999999999999999998732 234567788888
Q ss_pred eEEEEEEeccCC--CCCCCcceeecCCCC-ccceEeeccccccccCCCCCeEEEEEee-CCC-CCCCCCHHHHHHHHHHH
Q 019274 146 VVSVKLWFDKKV--TVPNVSNACSGFGDS-LAWTFFDLNKIYDEHKDDSATVIQADFY-HAN-ELMPLKDDQVVAKAVSY 220 (343)
Q Consensus 146 ~~~v~l~~~~~~--~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~i~~~~~-~~~-~~~~~~~~e~~~~~~~~ 220 (343)
++++.++++.+. ..+..++.++..+.. ..-++++ ++..|...+.+..++.+.++ ..+ ....+++||+.+.++++
T Consensus 290 ~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~-S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~ 368 (444)
T COG1232 290 VVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFH-SNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDD 368 (444)
T ss_pred eEEEEEEeccccccCCCCceEEEEecCCCcceeEEEe-cccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHH
Confidence 888988898862 212223333322212 2222333 33333222125566666554 333 23457799999999999
Q ss_pred HhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCC----CCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHH
Q 019274 221 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMM----RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRV 296 (343)
Q Consensus 221 L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p----~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~i 296 (343)
|.++++...+ .+...++||+.++|+|.+|+..++. .....++|++.+|.|.. + -++.+|+.+|..||+.|
T Consensus 369 L~~~~~~~~~--~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~-g---~g~~d~I~~g~~aa~~l 442 (444)
T COG1232 369 LKKLGGINGD--PVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGE-G---VGLPDCIAAGKEAAEQL 442 (444)
T ss_pred HHHHcCcCcc--hhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCC-C---CCchHHHHHHHHHHHHh
Confidence 9999998764 4477899999999999999865433 23334589999999954 2 26789999999999988
Q ss_pred H
Q 019274 297 V 297 (343)
Q Consensus 297 l 297 (343)
+
T Consensus 443 ~ 443 (444)
T COG1232 443 L 443 (444)
T ss_pred h
Confidence 6
No 9
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.92 E-value=2.6e-23 Score=199.71 Aligned_cols=282 Identities=15% Similarity=0.166 Sum_probs=198.7
Q ss_pred cCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHH----------Hhc---C-----------CCceeEeecCC
Q 019274 3 QFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LAH---Q-----------KNFDLVWCRGT 58 (343)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~----------~~~---~-----------~~~~~~~~~gG 58 (343)
++++++++++++++|++.++|+.+++++|+.++++.+.... ... + .+..+..++||
T Consensus 144 ~~~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG 223 (462)
T TIGR00562 144 RRRFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATG 223 (462)
T ss_pred HHhcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchh
Confidence 35689999999999999999999999999998776543221 000 0 01114457899
Q ss_pred CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhhcccCchhHHh
Q 019274 59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLK 137 (343)
Q Consensus 59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~ 137 (343)
+ ++|+++|++.+. .++|+++++|++|..++ ++ +.|+++ |++++||+||+|+|++.+.+|+++.. ....+.
T Consensus 224 ~-~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~--~~-~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~---~~~~~~ 294 (462)
T TIGR00562 224 L-ETLPEEIEKRLK--LTKVYKGTKVTKLSHRG--SN-YTLELDNGVTVETDSVVVTAPHKAAAGLLSELS---NSASSH 294 (462)
T ss_pred H-HHHHHHHHHHhc--cCeEEcCCeEEEEEecC--Cc-EEEEECCCcEEEcCEEEECCCHHHHHHHhcccC---HHHHHH
Confidence 5 679999998885 27899999999999876 44 456665 56899999999999999999987531 345577
Q ss_pred hccCcccceEEEEEEeccCCCCCCC--cceeecCCC---CccceEeeccccccccCCCCCeEEEEEee--CCCCCCCCCH
Q 019274 138 VLNLASIDVVSVKLWFDKKVTVPNV--SNACSGFGD---SLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKD 210 (343)
Q Consensus 138 ~~~l~~~~~~~v~l~~~~~~~~~~~--~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~ 210 (343)
+.++.+.++.++++.|+++.+.... +..+...+. ...+ +++.+ ..+...+++..++.+.+. .+.++.++++
T Consensus 295 l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-i~~s~-~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ 372 (462)
T TIGR00562 295 LDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGC-IFTSK-LFPNRAPPGKTLLTAYIGGATDESIVDLSE 372 (462)
T ss_pred HhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEE-EEEcc-ccCCcCCCCcEEEEEEeCCCCCccccCCCH
Confidence 8889999999999999876442211 111211111 1122 34432 223222234445433332 2345567789
Q ss_pred HHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCC----CCCCCCCeEEeeccccCCCCCccchHHH
Q 019274 211 DQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR----GFTSFPNLFMAGDWITTRHGSWSQERSY 286 (343)
Q Consensus 211 ~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~----~~~~~~~L~laGd~~~~g~~~~~~ega~ 286 (343)
+++++.++++|.++++. .. ++....+.+|+.+.|.|.+|+....+. .....+|||+||+|.. + .+|++|+
T Consensus 373 ee~~~~v~~~L~~~~gi-~~-~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~---g-~~i~~~i 446 (462)
T TIGR00562 373 NEIINIVLRDLKKVLNI-NN-EPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFE---G-VGIPDCI 446 (462)
T ss_pred HHHHHHHHHHHHHHhCC-CC-CCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccC---C-CcHHHHH
Confidence 99999999999999973 33 467778999999999999987443222 2234579999999975 2 4799999
Q ss_pred HHHHHHHHHHHHHhC
Q 019274 287 VTGLEAANRVVDYLG 301 (343)
Q Consensus 287 ~Sg~~aA~~il~~~~ 301 (343)
.||..+|++|++.+.
T Consensus 447 ~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 447 DQGKAAASDVLTFLF 461 (462)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999988653
No 10
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.92 E-value=4.1e-23 Score=198.27 Aligned_cols=278 Identities=15% Similarity=0.148 Sum_probs=193.4
Q ss_pred CCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHH----------h------cCCCceeEeecCCCchhhhHHH
Q 019274 4 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL----------A------HQKNFDLVWCRGTLREKIFEPW 67 (343)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~----------~------~~~~~~~~~~~gG~~~~l~~~l 67 (343)
+++++++.+++++|++.++|+.+++++|+..+++.+..+.- . ......+.+++||+ +.|+++|
T Consensus 154 ~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l 232 (463)
T PRK12416 154 SFLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGL-STIIDRL 232 (463)
T ss_pred HhcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCH-HHHHHHH
Confidence 46889999999999999999999999998876655433210 0 01123356789996 6799999
Q ss_pred HHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccce
Q 019274 68 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDV 146 (343)
Q Consensus 68 ~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~ 146 (343)
++.+++ ++|++|++|++|..++ ++ +.|++. |++++||+||+|+|++.+.+|+.++.+ ...+.++.+.++
T Consensus 233 ~~~l~~--~~i~~~~~V~~I~~~~--~~-~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l-----~~~~~~~~~~~~ 302 (463)
T PRK12416 233 EEVLTE--TVVKKGAVTTAVSKQG--DR-YEISFANHESIQADYVVLAAPHDIAETLLQSNEL-----NEQFHTFKNSSL 302 (463)
T ss_pred HHhccc--ccEEcCCEEEEEEEcC--CE-EEEEECCCCEEEeCEEEECCCHHHHHhhcCCcch-----hHHHhcCCCCce
Confidence 999864 6899999999999887 55 456665 567899999999999999888865322 234567788899
Q ss_pred EEEEEEeccCCCC-CC-CcceeecCCCCc--cceEeeccccccccCCCCCeEEEEEeeC-----CCCCCCCCHHHHHHHH
Q 019274 147 VSVKLWFDKKVTV-PN-VSNACSGFGDSL--AWTFFDLNKIYDEHKDDSATVIQADFYH-----ANELMPLKDDQVVAKA 217 (343)
Q Consensus 147 ~~v~l~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~e~~~~~ 217 (343)
.+++++|+.+.+. +. .++.+....... ..+.+. ++..+.-. ++..++...+.. .+++.+++++++.+.+
T Consensus 303 ~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~-s~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~ 380 (463)
T PRK12416 303 ISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWT-SRKWKHTS-GKQKLLVRMFYKSTNPVYETIKNYSEEELVRVA 380 (463)
T ss_pred EEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEee-cCCCCCcC-CCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHH
Confidence 9999999976431 11 112222211111 011121 11111111 344444333432 2345677899999999
Q ss_pred HHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCC----CCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHH
Q 019274 218 VSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM----MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAA 293 (343)
Q Consensus 218 ~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~----p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA 293 (343)
+++|+++|+.. . +++...+.+|..++|.|.+|+.... +....+.+|||+||+++. | .+|++|+.||+.+|
T Consensus 381 ~~~L~~~lG~~-~-~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~-g---~~i~~ai~sg~~aA 454 (463)
T PRK12416 381 LYDIEKSLGIK-G-EPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYY-G---VGIGACIGNGKNTA 454 (463)
T ss_pred HHHHHHHhCCC-C-CceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccc-c---ccHHHHHHHHHHHH
Confidence 99999999743 3 6778889999999999988863321 122234689999999976 2 47899999999999
Q ss_pred HHHHHHh
Q 019274 294 NRVVDYL 300 (343)
Q Consensus 294 ~~il~~~ 300 (343)
++|++.+
T Consensus 455 ~~i~~~~ 461 (463)
T PRK12416 455 NEIIATL 461 (463)
T ss_pred HHHHHHh
Confidence 9998764
No 11
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.91 E-value=1.8e-22 Score=195.09 Aligned_cols=279 Identities=14% Similarity=0.154 Sum_probs=177.0
Q ss_pred CCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeee
Q 019274 6 CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVT 85 (343)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~ 85 (343)
+.++.++.++...+....+.++++.++...+.++... +. .....+++||+ +.|+++|++.++++|++|+++++|+
T Consensus 182 ~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~G~~~~~GG~-~~l~~aL~~~~~~~G~~i~~~~~V~ 256 (492)
T TIGR02733 182 GDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA---QA-PHGLWHLHGSM-QTLSDRLVEALKRDGGNLLTGQRVT 256 (492)
T ss_pred CccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhcc---cc-CCCceeecCcH-HHHHHHHHHHHHhcCCEEeCCceEE
Confidence 4566667777665544445667777776654443321 11 11235689995 6799999999999999999999999
Q ss_pred EEEecCCCCeEEEEEEC-C-----eEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccc-eEEEEEEeccCC-
Q 019274 86 DFIYDEERCCISDVVCG-K-----ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASID-VVSVKLWFDKKV- 157 (343)
Q Consensus 86 ~I~~~~~~g~v~~V~~~-g-----~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~-~~~v~l~~~~~~- 157 (343)
+|..++ +++.+|++. + ++++||+||+|+|+..+.+|+++..++ ....+.++++.+.+ .+++++++++..
T Consensus 257 ~I~~~~--~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~~s~~~~~v~l~~~~~~~ 333 (492)
T TIGR02733 257 AIHTKG--GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLP-PGYRKRLKKLPEPSGAFVFYLGVKRAAL 333 (492)
T ss_pred EEEEeC--CeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCC-HHHHHHHhcCCCCCceEEEEEeeccccc
Confidence 999987 666667653 3 578999999999999998888754332 23445567777664 567899998742
Q ss_pred CCCCCcceeecCCCCccceEeeccccccccCCCCCeEEEEE-eeCCCC--------CCCCCHHHHHHHHHHHHhhhcccC
Q 019274 158 TVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD-FYHANE--------LMPLKDDQVVAKAVSYLSKCIKDF 228 (343)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~-~~~~~~--------~~~~~~~e~~~~~~~~L~~~~p~~ 228 (343)
....+....+.++.. ...+...+...+..++++.+.+.+. +.+... |.. .++++.+.+++.|++.+|++
T Consensus 334 ~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~-~k~~~~~~il~~le~~~p~l 411 (492)
T TIGR02733 334 PVDCPPHLQFLSDHQ-GSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTA-KKKQYTQTIIERLGHYFDLL 411 (492)
T ss_pred CCCCCcceeeccCCC-ceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHCCCc
Confidence 111111111122211 1112222222233343455655332 222112 222 25668999999999999999
Q ss_pred CCCceeeeEEEecCCCcccc-----------CC--CCC-CCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHH
Q 019274 229 STATVMDHKIRRFPKSLTHF-----------FP--GSY-KYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAAN 294 (343)
Q Consensus 229 ~~~~~~~~~~~r~~~~~~~~-----------~~--g~~-~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~ 294 (343)
++ +++...+. +|.++..+ .. +.. ..++..+++++|||+||+++++| +++.|++.||+.||+
T Consensus 412 ~~-~i~~~~v~-TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG---~Gv~g~~~sg~~~a~ 486 (492)
T TIGR02733 412 EE-NWVHVELA-TPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPG---EGTAGVSYSALMVVR 486 (492)
T ss_pred cc-cEEEEEcc-CCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCC---CcHHHHHHHHHHHHH
Confidence 87 66665543 44433222 11 110 12334467999999999998765 467899999999999
Q ss_pred HHHHH
Q 019274 295 RVVDY 299 (343)
Q Consensus 295 ~il~~ 299 (343)
.|++.
T Consensus 487 ~i~~~ 491 (492)
T TIGR02733 487 QILAS 491 (492)
T ss_pred HHhhc
Confidence 99863
No 12
>PLN02576 protoporphyrinogen oxidase
Probab=99.91 E-value=1.8e-22 Score=195.54 Aligned_cols=282 Identities=14% Similarity=0.213 Sum_probs=192.9
Q ss_pred CCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHH-----------Hh--c----------------CCCceeEe
Q 019274 4 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII-----------LA--H----------------QKNFDLVW 54 (343)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~-----------~~--~----------------~~~~~~~~ 54 (343)
+++++++++++++|++.++|+.+++++|+..+++.+.... .. . ..+..+..
T Consensus 154 ~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (496)
T PLN02576 154 RHLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGS 233 (496)
T ss_pred HhcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEe
Confidence 4689999999999999999999999999998776644320 00 0 01122345
Q ss_pred ecCCCchhhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEEC---C-eEEecCEEEEeeChhhHHHhhhhhcc
Q 019274 55 CRGTLREKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG---K-ETYSAGAVVLAVGISTLQELIKNSIL 129 (343)
Q Consensus 55 ~~gG~~~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~---g-~~~~ad~VV~a~p~~~~~~Ll~~~~~ 129 (343)
++||+ +.|+++|++.+ + ++|++|++|++|..+++ ++ +.|++. | ++++||+||+|+|+..+.+|+.+..
T Consensus 234 ~~gG~-~~L~~~la~~l---~~~~i~l~~~V~~I~~~~~-~~-~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~- 306 (496)
T PLN02576 234 FRGGL-QTLPDALAKRL---GKDKVKLNWKVLSLSKNDD-GG-YSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKS- 306 (496)
T ss_pred ccchH-HHHHHHHHHhh---CcCcEEcCCEEEEEEECCC-Cc-EEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccC-
Confidence 68996 57999999877 4 68999999999998773 32 334432 4 3689999999999999999987532
Q ss_pred cCchhHHhhccCcccceEEEEEEeccCCCCCC-----C---cceeecCCCC---ccceEeeccccccccCCCCCeEEEEE
Q 019274 130 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-----V---SNACSGFGDS---LAWTFFDLNKIYDEHKDDSATVIQAD 198 (343)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~-----~---~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~i~~~ 198 (343)
+...+.+.++.|.++.++++.|+++.+... + +..+...... .++ +++ +...+...+++..++. .
T Consensus 307 --~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~-~~~-s~~~p~~~~~~~~~l~-~ 381 (496)
T PLN02576 307 --PAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGT-IYS-SSLFPDRAPEGRVLLL-N 381 (496)
T ss_pred --HHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEE-Eee-cCcCCCCCCCCCEEEE-E
Confidence 345567788999999999999988754321 1 1111110000 111 233 2222322212333332 3
Q ss_pred eeC---CCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCCC---CC--CCeEEee
Q 019274 199 FYH---ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFT---SF--PNLFMAG 270 (343)
Q Consensus 199 ~~~---~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~---~~--~~L~laG 270 (343)
+.. ...+.+++++++++.++++|.++++......+....+.+|+.++|.|.+|+....+..+. .. +|||+||
T Consensus 382 ~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG 461 (496)
T PLN02576 382 YIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGG 461 (496)
T ss_pred EECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEec
Confidence 332 345667889999999999999999743211344556788999999999987543322211 22 7999999
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274 271 DWITTRHGSWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 271 d~~~~g~~~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
+|+. | .++++|+.||..+|++|+..+.
T Consensus 462 ~~~~-g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 462 NYRG-G---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred cccC-C---ccHHHHHHHHHHHHHHHHHHHh
Confidence 9986 3 4789999999999999988754
No 13
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.91 E-value=2.2e-22 Score=192.66 Aligned_cols=276 Identities=17% Similarity=0.171 Sum_probs=190.4
Q ss_pred CCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHh--------------c--CCCceeEeecCCCchhhhHHH
Q 019274 4 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA--------------H--QKNFDLVWCRGTLREKIFEPW 67 (343)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~--------------~--~~~~~~~~~~gG~~~~l~~~l 67 (343)
.++++++++.+++|++.++|+.+++++|+..++..+...... . ..+..+.+++||+ +.|+++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~l~~~l 227 (451)
T PRK11883 149 RRFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGL-QSLIEAL 227 (451)
T ss_pred HhccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHH-HHHHHHH
Confidence 468899999999999999999999999998766544322100 0 0122455688995 6799999
Q ss_pred HHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccce
Q 019274 68 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDV 146 (343)
Q Consensus 68 ~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~ 146 (343)
++.+++. +|+++++|++|..++ +. +.|.+. |++++||+||+|+|+..+.+++.++ +..+.++++.+.++
T Consensus 228 ~~~l~~~--~i~~~~~V~~i~~~~--~~-~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~-----~~~~~~~~~~~~~~ 297 (451)
T PRK11883 228 EEKLPAG--TIHKGTPVTKIDKSG--DG-YEIVLSNGGEIEADAVIVAVPHPVLPSLFVAP-----PAFALFKTIPSTSV 297 (451)
T ss_pred HHhCcCC--eEEeCCEEEEEEEcC--Ce-EEEEECCCCEEEcCEEEECCCHHHHHHhccCh-----hHHHHHhCCCCCce
Confidence 9887543 899999999999877 44 346654 6789999999999999999886542 23456778889999
Q ss_pred EEEEEEeccCCCC-CCCcceeecCCCC--ccceEeeccccccccCCCCCeEEEEEee-CC-CCCCCCCHHHHHHHHHHHH
Q 019274 147 VSVKLWFDKKVTV-PNVSNACSGFGDS--LAWTFFDLNKIYDEHKDDSATVIQADFY-HA-NELMPLKDDQVVAKAVSYL 221 (343)
Q Consensus 147 ~~v~l~~~~~~~~-~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~i~~~~~-~~-~~~~~~~~~e~~~~~~~~L 221 (343)
.++++.+++++.. ...++.++..+.. .....++ +...+...+++..++...+. +. ....+++++++++.++++|
T Consensus 298 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 376 (451)
T PRK11883 298 ATVALAFPESATNLPDGTGFLVARNSDYTITACTWT-SKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADL 376 (451)
T ss_pred EEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeE-cCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHH
Confidence 9999999987421 2222333332211 1122233 22222222123344333221 21 2234568999999999999
Q ss_pred hhhcccCCCCceeeeEEEecCCCccccCCCCCCC----CCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHH
Q 019274 222 SKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 297 (343)
Q Consensus 222 ~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~----~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il 297 (343)
+++++.. . +++...+.+|..+.+.+.+++... ++.... ++|||+||+|+. + .++++|+.||+.+|++|+
T Consensus 377 ~~~~g~~-~-~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~---g-~~i~~av~sg~~~a~~i~ 449 (451)
T PRK11883 377 SKVMGIT-G-DPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFE---G-VGLPDCIAQAKRAAARLL 449 (451)
T ss_pred HHHhCCC-C-CceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccC---C-ccHHHHHHHHHHHHHHHH
Confidence 9998643 2 456778899999999888886432 122222 679999999975 2 479999999999999997
Q ss_pred H
Q 019274 298 D 298 (343)
Q Consensus 298 ~ 298 (343)
.
T Consensus 450 ~ 450 (451)
T PRK11883 450 A 450 (451)
T ss_pred h
Confidence 5
No 14
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.89 E-value=3e-21 Score=187.12 Aligned_cols=282 Identities=11% Similarity=0.020 Sum_probs=176.1
Q ss_pred CCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeee
Q 019274 6 CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVT 85 (343)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~ 85 (343)
+.++.++.++. +....++.++++.++...+..+..+ .....+|+||+ ..++++|.+.++++|++|+++++|+
T Consensus 172 ~~~~~l~~~l~-~~~~~~g~~p~~~~~~~~l~~~~~~------~~g~~~~~gG~-~~l~~al~~~~~~~G~~i~~~~~V~ 243 (502)
T TIGR02734 172 FSDERLRQAFS-FHALFLGGNPFRTPSIYALISALER------EWGVWFPRGGT-GALVAAMAKLAEDLGGELRLNAEVI 243 (502)
T ss_pred cCCHHHHHHhc-ccceeeccCcccchHHHHHHHHHHh------hceEEEcCCCH-HHHHHHHHHHHHHCCCEEEECCeEE
Confidence 34444554544 2234556778787766543332221 12234788995 7899999999999999999999999
Q ss_pred EEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH-HhhhhhcccCchhHHhhccCccc-ceEEEEEEecc---CCCC
Q 019274 86 DFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNLASI-DVVSVKLWFDK---KVTV 159 (343)
Q Consensus 86 ~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~-~Ll~~~~~~~~~~~~~~~~l~~~-~~~~v~l~~~~---~~~~ 159 (343)
+|..++ +++++|+++ |++++||+||+|+++..+. .|++....+ ....+.++++++. +.++++++++. .+..
T Consensus 244 ~i~~~~--~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~ 320 (502)
T TIGR02734 244 RIETEG--GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRR-RYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQ 320 (502)
T ss_pred EEEeeC--CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccc-cccccccccCCcCCeeeEEEEeeccccCcCCC
Confidence 999887 778889887 5689999999999997765 566544321 1222344556644 67788999983 3321
Q ss_pred CCCcceeecCCC--------------CccceEeec-cccccccCCCCCeEEEEEe-eCC-----CCCCCCCHHHHHHHHH
Q 019274 160 PNVSNACSGFGD--------------SLAWTFFDL-NKIYDEHKDDSATVIQADF-YHA-----NELMPLKDDQVVAKAV 218 (343)
Q Consensus 160 ~~~~~~~~~~~~--------------~~~~~~~d~-~~~~~~~~~~~~~~i~~~~-~~~-----~~~~~~~~~e~~~~~~ 218 (343)
...++.++..+. .....+... +...+..++++.+.+.+.. .+. ..|.. .++++.+.++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~il 399 (502)
T TIGR02734 321 LAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWSV-EGPRYRDRIL 399 (502)
T ss_pred cCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcHH-HHHHHHHHHH
Confidence 112333332110 001111111 1112334434555543322 221 12333 3677899999
Q ss_pred HHHhhh-cccCCCCceeeeEEEecCC-----------CccccCCC---CCCCCCC-CCCCCCCeEEeeccccCCCCCccc
Q 019274 219 SYLSKC-IKDFSTATVMDHKIRRFPK-----------SLTHFFPG---SYKYMMR-GFTSFPNLFMAGDWITTRHGSWSQ 282 (343)
Q Consensus 219 ~~L~~~-~p~~~~~~~~~~~~~r~~~-----------~~~~~~~g---~~~~~p~-~~~~~~~L~laGd~~~~g~~~~~~ 282 (343)
+.|++. +|++++ .++...+. +|. +.++..+. ....+|. ..++++|||+||+++++| +++
T Consensus 400 ~~l~~~~~p~l~~-~i~~~~~~-TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~pG---~Gv 474 (502)
T TIGR02734 400 AYLEERAIPGLRD-RIVVERTF-TPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPG---AGV 474 (502)
T ss_pred HHHHHhcCCChhH-heEEEEEc-CHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCCC---CCH
Confidence 999998 999987 66665443 332 22222111 1123554 346899999999998765 467
Q ss_pred hHHHHHHHHHHHHHHHHhCCCC
Q 019274 283 ERSYVTGLEAANRVVDYLGDGS 304 (343)
Q Consensus 283 ega~~Sg~~aA~~il~~~~~~~ 304 (343)
.+++.||++||+.|+++.+.|.
T Consensus 475 ~g~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 475 PGVLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred HHHHHHHHHHHHHHHhhccCCC
Confidence 8899999999999999988666
No 15
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.88 E-value=1.9e-20 Score=180.92 Aligned_cols=281 Identities=16% Similarity=0.138 Sum_probs=173.2
Q ss_pred CHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeE
Q 019274 7 SERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTD 86 (343)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~ 86 (343)
.++.++.++...+......+++++++...+..+... ......+|.||+ ..|+++|.+.++++|++|+++++|++
T Consensus 181 ~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~-----~~~g~~~~~gG~-~~l~~~L~~~~~~~G~~i~~~~~V~~ 254 (493)
T TIGR02730 181 RDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDR-----HYGGINYPKGGV-GQIAESLVKGLEKHGGQIRYRARVTK 254 (493)
T ss_pred CCHHHHHHHHHHHHhccCCCcccchhhhHHHhhccc-----ccceEecCCChH-HHHHHHHHHHHHHCCCEEEeCCeeeE
Confidence 334444455443333323345677665554433211 112346789995 67999999999999999999999999
Q ss_pred EEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH-HhhhhhcccCchhHHhhccCccc-ceEEEEEEeccCCCCC--C
Q 019274 87 FIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNLASI-DVVSVKLWFDKKVTVP--N 161 (343)
Q Consensus 87 I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~-~Ll~~~~~~~~~~~~~~~~l~~~-~~~~v~l~~~~~~~~~--~ 161 (343)
|..++ +++++|+++ |++++||.||+|++++.+. +|++...++ ......++++++. +.++++++++....+. .
T Consensus 255 I~~~~--~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~-~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~ 331 (493)
T TIGR02730 255 IILEN--GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLP-KKEKNWQRNYVKSPSFLSLHLGVKADVLPPGTE 331 (493)
T ss_pred EEecC--CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccc-hhhHHHHhhccCCCceEEEEEEecCccCCCCCC
Confidence 99887 788899986 6689999999999887765 687765432 2223334555544 5788999999854211 1
Q ss_pred Ccceeec-CC---CCccceEeec-cccccccCCCCCeEEEEEe-eCCCCCCC-------CCHHHHHHHHHHHHhhhcccC
Q 019274 162 VSNACSG-FG---DSLAWTFFDL-NKIYDEHKDDSATVIQADF-YHANELMP-------LKDDQVVAKAVSYLSKCIKDF 228 (343)
Q Consensus 162 ~~~~~~~-~~---~~~~~~~~d~-~~~~~~~~~~~~~~i~~~~-~~~~~~~~-------~~~~e~~~~~~~~L~~~~p~~ 228 (343)
.+..++. +. ......+... +...+..++++.+++.+.. .+...|.+ ..++++.+.+++.|++++|++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~~~il~~l~~~~p~l 411 (493)
T TIGR02730 332 CHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADAERIIDRLEKIFPGL 411 (493)
T ss_pred ccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHHHHHHHHHHHHCCCh
Confidence 1222211 00 0111111111 2222334434555553322 11222221 125668999999999999999
Q ss_pred CCCceeeeEEEecCCCccccC--C----CCC-------CCC-CCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHH
Q 019274 229 STATVMDHKIRRFPKSLTHFF--P----GSY-------KYM-MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAAN 294 (343)
Q Consensus 229 ~~~~~~~~~~~r~~~~~~~~~--~----g~~-------~~~-p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~ 294 (343)
++ .++...+. +|.+...|. + |.. ..+ |..+++++|||+||+++++| +++.+|+.||+.||+
T Consensus 412 ~~-~I~~~~~~-TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG---~Gv~g~~~sG~~~a~ 486 (493)
T TIGR02730 412 DS-AIDYKEVG-TPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPG---QGLNAVAFSGFACAH 486 (493)
T ss_pred hh-cEEEEEee-CchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCC---CCHHHHHHHHHHHHH
Confidence 87 66655443 444332221 0 100 011 34568999999999998764 467899999999999
Q ss_pred HHHHHhC
Q 019274 295 RVVDYLG 301 (343)
Q Consensus 295 ~il~~~~ 301 (343)
.|+++++
T Consensus 487 ~i~~~~~ 493 (493)
T TIGR02730 487 RVAADLG 493 (493)
T ss_pred HHHhhcC
Confidence 9998753
No 16
>PLN02268 probable polyamine oxidase
Probab=99.86 E-value=1.8e-20 Score=178.62 Aligned_cols=268 Identities=19% Similarity=0.119 Sum_probs=177.1
Q ss_pred CCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEccee
Q 019274 4 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRR 83 (343)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~ 83 (343)
.++++++++.++.| +.+.++.+++++|+..+.. ...+. +. ..++.+|+ +.|+++|++ +.+|++|++
T Consensus 153 ~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~---~~~~~---g~-~~~~~~G~-~~l~~~l~~-----~~~i~~~~~ 218 (435)
T PLN02268 153 EGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ---EELLE---GG-HGLMVRGY-DPVINTLAK-----GLDIRLNHR 218 (435)
T ss_pred chHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC---ccccC---CC-ceeecCCH-HHHHHHHhc-----cCceeCCCe
Confidence 34677788878788 4567899999999864211 00000 11 13456784 668887754 567999999
Q ss_pred eeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHh-hhh-hcccCchhHHhhccCcccceEEEEEEeccCCCCC
Q 019274 84 VTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQEL-IKN-SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVP 160 (343)
Q Consensus 84 V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~L-l~~-~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~ 160 (343)
|++|...+ +.+ .|++. |+++.||+||+|+|+..+.++ +.. +.++ ....+.++++.+.+..++.+.|++++|..
T Consensus 219 V~~i~~~~--~~v-~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp-~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~ 294 (435)
T PLN02268 219 VTKIVRRY--NGV-KVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELP-EWKEEAISDLGVGIENKIALHFDSVFWPN 294 (435)
T ss_pred eEEEEEcC--CcE-EEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCC-HHHHHHHHhCCccceeEEEEEeCCCCCCC
Confidence 99999877 344 46665 568999999999999998753 222 2232 33457778888889999999999998743
Q ss_pred CCcceeecCCC-C-ccceEeeccccccccCCCCCeEEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeee
Q 019274 161 NVSNACSGFGD-S-LAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDH 236 (343)
Q Consensus 161 ~~~~~~~~~~~-~-~~~~~~d~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~ 236 (343)
. .+++... . .....++.. .. .++..++.+... .+..+..++++++.+.++++|.++||... +++..
T Consensus 295 -~--~~~g~~~~~~~~~~~~~~~--~~---~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~--~p~~~ 364 (435)
T PLN02268 295 -V--EFLGVVAPTSYGCSYFLNL--HK---ATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDAT--EPVQY 364 (435)
T ss_pred -C--ceeeccCCCCCCceEEEec--cc---CCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCC--CccEE
Confidence 2 1223211 1 111122211 11 123344433222 23446678899999999999999998654 46677
Q ss_pred EEEecCCCcc------ccCCCCCC-CCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHh
Q 019274 237 KIRRFPKSLT------HFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 237 ~~~r~~~~~~------~~~~g~~~-~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~ 300 (343)
.+++|...-+ .+.||... ..+....|+++|||||+++...++ ++|+||+.||++||++|++.+
T Consensus 365 ~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~-g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 365 LVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFP-GSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred EecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCccc-ccHHHHHHHHHHHHHHHHHhh
Confidence 7888854321 12344321 223344678899999999987777 699999999999999998753
No 17
>PLN03000 amine oxidase
Probab=99.85 E-value=1.4e-19 Score=179.43 Aligned_cols=232 Identities=15% Similarity=0.167 Sum_probs=157.0
Q ss_pred eEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHH--Hhhhhhcc
Q 019274 52 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSIL 129 (343)
Q Consensus 52 ~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~--~Ll~~~~~ 129 (343)
....+|| ++.|+++|++.+ .|+++++|++|..++ +.| .|++++++++||+||+|+|+.++. .+.-.+.+
T Consensus 373 ~~~v~GG-~~~LieaLa~~L-----~I~Ln~~Vt~I~~~~--dgV-~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpL 443 (881)
T PLN03000 373 HCFLPGG-NGRLVQALAENV-----PILYEKTVQTIRYGS--NGV-KVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPEL 443 (881)
T ss_pred eEEeCCC-HHHHHHHHHhhC-----CcccCCcEEEEEECC--CeE-EEEECCcEEEeceEEEcCCHHHHhhCceeeCCCC
Confidence 3446799 477999999876 399999999999987 444 466666789999999999999998 33222234
Q ss_pred cCchhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCC---CC---ccceEeeccccccccCCCCCeEEEEEee--C
Q 019274 130 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG---DS---LAWTFFDLNKIYDEHKDDSATVIQADFY--H 201 (343)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~---~~---~~~~~~d~~~~~~~~~~~~~~~i~~~~~--~ 201 (343)
+ ....++++++.+..+.++.+.|++++|.... ..+|+. .. ....+++.+ + ..+..++.+... .
T Consensus 444 P-~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~--~~FG~l~~~~~~rg~~~~f~s~s---p---~~G~pVLvafv~Gd~ 514 (881)
T PLN03000 444 P-QRKLDCIKRLGFGLLNKVAMLFPYVFWSTDL--DTFGHLTEDPNYRGEFFLFYSYA---P---VAGGPLLIALVAGEA 514 (881)
T ss_pred C-HHHHHHHHcCCCcceEEEEEEeCCccccCCC--CceeEEecCCCCCceeEEEeCCC---C---CCCCcEEEEEecCch
Confidence 2 3456788999999999999999999985321 122221 01 111112211 1 013334433222 2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhccc--CCCCceeeeEEEecCCCcc------ccCCCCCC-CCCCCCCCC--CCeEEee
Q 019274 202 ANELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLT------HFFPGSYK-YMMRGFTSF--PNLFMAG 270 (343)
Q Consensus 202 ~~~~~~~~~~e~~~~~~~~L~~~~p~--~~~~~~~~~~~~r~~~~~~------~~~~g~~~-~~p~~~~~~--~~L~laG 270 (343)
+..+..++++++.+.+++.|+++|+. ..-.+++...+++|...-+ .+.||... .......++ ++|||||
T Consensus 515 A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAG 594 (881)
T PLN03000 515 AHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAG 594 (881)
T ss_pred hHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEee
Confidence 34567789999999999999999962 2111466777888854322 22344321 111222344 5899999
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274 271 DWITTRHGSWSQERSYVTGLEAANRVVDYLGD 302 (343)
Q Consensus 271 d~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~ 302 (343)
+++...|+ ++|+||+.||++||++|+..+.+
T Consensus 595 EaTs~~~~-GTVhGAieSGlRAA~eIl~~l~~ 625 (881)
T PLN03000 595 EATTRRYP-ATMHGAFVTGLREAANMAQSAKA 625 (881)
T ss_pred hHHhCCCC-eeHHHHHHHHHHHHHHHHHHhhh
Confidence 99987788 79999999999999999999875
No 18
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=2.8e-20 Score=172.51 Aligned_cols=298 Identities=24% Similarity=0.288 Sum_probs=228.5
Q ss_pred CccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEc
Q 019274 1 MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLD 80 (343)
Q Consensus 1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~ 80 (343)
|++++.+...++..|.|++....+.+++.+|++.++.++..+++.+.++.....++|+..+.+..++.+++++.|.+++.
T Consensus 155 l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~ 234 (485)
T COG3349 155 LKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHA 234 (485)
T ss_pred HHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeec
Confidence 45678899999999999999999999999999999999988766654566666778998999999999999999999999
Q ss_pred ceeeeEEEecCCC--CeEEEEEECCe---EEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEEEEEecc
Q 019274 81 GRRVTDFIYDEER--CCISDVVCGKE---TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDK 155 (343)
Q Consensus 81 ~~~V~~I~~~~~~--g~v~~V~~~g~---~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~ 155 (343)
..+|++|..+..+ .+++++.+.+. ...++.|+.+.........++..+.+ ...++.+..++..++++++++++.
T Consensus 235 ~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~-~~~f~~ly~l~~~p~~~~~l~~~~ 313 (485)
T COG3349 235 DYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSEWPK-WSNFDGLYGLRLVPVITLHLRFDG 313 (485)
T ss_pred cceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcCcccccc-cccccccccccccceeEEEEeecC
Confidence 9999999887531 45788877653 34567777777777777778877632 344566777778899999999986
Q ss_pred CCCCCCCc-------ceeecCCCCccceEeeccccccccCCCCC-eEEEEEeeCCCCCCCCCHHHHHHHHHHHHhhhccc
Q 019274 156 KVTVPNVS-------NACSGFGDSLAWTFFDLNKIYDEHKDDSA-TVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKD 227 (343)
Q Consensus 156 ~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~ 227 (343)
........ +.... +.+....+++....++.|..++. +.+.....++..|...+++++.....+.+...+|.
T Consensus 314 ~~~~~~~~~~~~~~dn~~~s-~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~ 392 (485)
T COG3349 314 WVTELTDRNQQFGIDNLLWS-DDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPS 392 (485)
T ss_pred ccccccccchhhhhhccccc-cccCCceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCc
Confidence 54322211 11111 11223335665555555554443 44433445677778888999999999999999998
Q ss_pred CCCCceeeeEEEecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274 228 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 302 (343)
Q Consensus 228 ~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~ 302 (343)
..+++ ....+.+.+++.+...||+..+||.+.|+++|++++|||+... +.++||+|..||+.||+.|++.+..
T Consensus 393 ~~~a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~-~~~smE~A~~sGl~AA~~v~~~~~~ 465 (485)
T COG3349 393 LAEAK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQP-YLGSMEGATLSGLLAANAILDNLGH 465 (485)
T ss_pred hhccc-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecC-CcCccchhhhhHHHHHHHHHHhhhh
Confidence 76645 3445666889999999999999999999999999999999754 3479999999999999999987764
No 19
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.85 E-value=5.4e-20 Score=174.34 Aligned_cols=271 Identities=21% Similarity=0.182 Sum_probs=163.9
Q ss_pred hHHHHHHhhhcCCcccccHHHHHHHHHHHHHh----cCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEe
Q 019274 14 VIGPLVQVGLFAPAEQCSAAATLGILYFIILA----HQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIY 89 (343)
Q Consensus 14 ~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~----~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~ 89 (343)
++.++....++..+...++......+...... ...........|+ +...+...++..|++|++|++|++|..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~g~~i~l~~~V~~I~~ 237 (450)
T PF01593_consen 162 LFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGG----LSLALALAAEELGGEIRLNTPVTRIER 237 (450)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTT----THHHHHHHHHHHGGGEESSEEEEEEEE
T ss_pred HHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccc----hhHHHHHHHhhcCceeecCCcceeccc
Confidence 45566666666666666666333333221110 1111122223444 334455556666889999999999999
Q ss_pred cCCCCeEEEEEE-CCeEEecCEEEEeeChhhHHH-hhhhhcccCchhHHhhccCcccceEEEEEEeccCCCCCCC-ccee
Q 019274 90 DEERCCISDVVC-GKETYSAGAVVLAVGISTLQE-LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNV-SNAC 166 (343)
Q Consensus 90 ~~~~g~v~~V~~-~g~~~~ad~VV~a~p~~~~~~-Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~-~~~~ 166 (343)
++ ++|. |.+ +|++++||+||+|+|+..+.+ .+.+. ++ ....+.++++.+.++.++++.++++++.+.. ...+
T Consensus 238 ~~--~~v~-v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~-l~-~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~ 312 (450)
T PF01593_consen 238 ED--GGVT-VTTEDGETIEADAVISAVPPSVLKNILLLPP-LP-EDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGI 312 (450)
T ss_dssp ES--SEEE-EEETTSSEEEESEEEE-S-HHHHHTSEEEST-SH-HHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEE
T ss_pred cc--cccc-cccccceEEecceeeecCchhhhhhhhhccc-cc-ccccccccccccCcceeEEEeeecccccccccccce
Confidence 98 7765 555 467999999999999999986 22221 21 2345677888899989999999999875431 1111
Q ss_pred ecCCC-CccceEeeccccccccCCCCCeEEEEEee-C-CCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCC
Q 019274 167 SGFGD-SLAWTFFDLNKIYDEHKDDSATVIQADFY-H-ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPK 243 (343)
Q Consensus 167 ~~~~~-~~~~~~~d~~~~~~~~~~~~~~~i~~~~~-~-~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~ 243 (343)
...+. .....+.+.+...+. +++.++...+. . ...+..++++++.+.++++|++++|.....++....+.+|..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~ 389 (450)
T PF01593_consen 313 LYSDGFSPIGYVSDPSKFPGR---PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSR 389 (450)
T ss_dssp EEESSTSSEEEEEEECCTTSC---TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTT
T ss_pred ecccCccccccccccccCccc---ccCCcceeeeeccccchhcccchhhhHHHHHHHhhhcccccccccccccccccccc
Confidence 11121 111112222211111 23444433332 1 235677889999999999999999952111455556677865
Q ss_pred -CccccC-----CCCC-CCCCCCCCCC-CCeEEeeccccCCCCCccchHHHHHHHHHHHHHH
Q 019274 244 -SLTHFF-----PGSY-KYMMRGFTSF-PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 297 (343)
Q Consensus 244 -~~~~~~-----~g~~-~~~p~~~~~~-~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il 297 (343)
.++... ++.. ..++....++ +||||||||+.++++ ++++||+.||++||+.|+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~-~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 390 DPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYP-GGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp STTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSST-TSHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccCCcceEEEEeecccCCCCC-CcHHHHHHHHHHHHHHhC
Confidence 322222 2221 1234445677 699999999998877 699999999999999986
No 20
>PLN02529 lysine-specific histone demethylase 1
Probab=99.84 E-value=5.4e-19 Score=174.50 Aligned_cols=232 Identities=14% Similarity=0.156 Sum_probs=153.5
Q ss_pred eEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHH--hhhhhcc
Q 019274 52 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSIL 129 (343)
Q Consensus 52 ~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~--Ll~~~~~ 129 (343)
...+.||+ ++|+++|++. ..|++|++|++|..++ +.| .|++++++++||+||+|+|+..+.+ +.-.+.+
T Consensus 349 ~~~i~GG~-~~Li~aLA~~-----L~IrLnt~V~~I~~~~--dGV-tV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpL 419 (738)
T PLN02529 349 HCFLAGGN-WRLINALCEG-----VPIFYGKTVDTIKYGN--DGV-EVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPEL 419 (738)
T ss_pred eEEECCcH-HHHHHHHHhc-----CCEEcCCceeEEEEcC--CeE-EEEECCEEEEcCEEEECCCHHHHHhccccCCCCC
Confidence 34567995 6799988764 4699999999999987 344 4666677899999999999999974 3222233
Q ss_pred cCchhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCC----CCc-cceE-eeccccccccCCCCCeEEEEEee--C
Q 019274 130 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG----DSL-AWTF-FDLNKIYDEHKDDSATVIQADFY--H 201 (343)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~----~~~-~~~~-~d~~~~~~~~~~~~~~~i~~~~~--~ 201 (343)
| ....++++++.+.++.++++.|++++|..... .++.. ... .+.. ++.+. .+++.++.+... .
T Consensus 420 P-~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~--~fG~l~~~~~~~g~~~~~~~~~~------~~ggpvLvafv~G~~ 490 (738)
T PLN02529 420 P-RRKLAAIDRLGFGLLNKVAMVFPSVFWGEELD--TFGCLNESSNKRGEFFLFYGYHT------VSGGPALVALVAGEA 490 (738)
T ss_pred C-HHHHHHHHcCCCceeEEEEEEeCCccccCCCC--ceEEEeccCCCCceEEEEecCCC------CCCCCEEEEEECchh
Confidence 2 44568889999999999999999998843211 22211 011 1111 22111 023334333222 2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhccc--CCCCceeeeEEEecCCCccc------cCCCCCC-CCCCCCCC-CCCeEEeec
Q 019274 202 ANELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLTH------FFPGSYK-YMMRGFTS-FPNLFMAGD 271 (343)
Q Consensus 202 ~~~~~~~~~~e~~~~~~~~L~~~~p~--~~~~~~~~~~~~r~~~~~~~------~~~g~~~-~~p~~~~~-~~~L~laGd 271 (343)
+..+..++++++.+.+++.|+++|+. .....++...+++|....+. ..|+... .......+ .++|||||+
T Consensus 491 A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGE 570 (738)
T PLN02529 491 AQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGE 570 (738)
T ss_pred hHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEH
Confidence 34466788999999999999999962 21114556667788543221 1222211 01111233 478999999
Q ss_pred cccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274 272 WITTRHGSWSQERSYVTGLEAANRVVDYLGD 302 (343)
Q Consensus 272 ~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~ 302 (343)
++..+|+ ++|+||+.||.+||++|++.+..
T Consensus 571 aTs~~~p-gtVeGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 571 ATTRQYP-ATMHGAFLSGLREASRILHVARS 600 (738)
T ss_pred HHhCCCC-eEeHHHHHHHHHHHHHHHHHHhh
Confidence 9998888 79999999999999999988764
No 21
>PLN02676 polyamine oxidase
Probab=99.82 E-value=2.1e-19 Score=172.44 Aligned_cols=236 Identities=12% Similarity=0.154 Sum_probs=156.6
Q ss_pred cCCCchhhhHHHHHHHHHc------CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHH--hhhh
Q 019274 56 RGTLREKIFEPWMDSMRTR------GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQE--LIKN 126 (343)
Q Consensus 56 ~gG~~~~l~~~l~~~l~~~------G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~--Ll~~ 126 (343)
+|| ++.|+++|++.+.+. +.+|++|++|++|..++ +.| .|++. |++++||+||+|+|+..+.+ +...
T Consensus 220 ~~G-~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~--~gV-~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~ 295 (487)
T PLN02676 220 PRG-YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK--NGV-TVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFK 295 (487)
T ss_pred CCC-HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC--CcE-EEEECCCCEEEeCEEEEccChHHhccCceEEe
Confidence 578 577999999876443 35799999999999887 344 57776 56899999999999999975 4333
Q ss_pred hcccCchhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCCCC-cc-ceEeeccccccccCCCCCeEEEEEeeC--C
Q 019274 127 SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS-LA-WTFFDLNKIYDEHKDDSATVIQADFYH--A 202 (343)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-~~-~~~~d~~~~~~~~~~~~~~~i~~~~~~--~ 202 (343)
+.+| ....+.++++.+....++.+.|++++|...+...++..... .. ..++.. ..... ++..++.+.+.. +
T Consensus 296 P~LP-~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~l~~~~~g~~a 370 (487)
T PLN02676 296 PPLP-DWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQH--LENEY--PGSNVLFVTVTDEES 370 (487)
T ss_pred CCCC-HHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhh--cccCC--CCCCEEEEEechHHH
Confidence 3443 34557788889999999999999999854221111111100 00 000100 00001 233444333322 2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCC------ccccCCCCCC-CCCCCCCCCCCeEEeeccccC
Q 019274 203 NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS------LTHFFPGSYK-YMMRGFTSFPNLFMAGDWITT 275 (343)
Q Consensus 203 ~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~------~~~~~~g~~~-~~p~~~~~~~~L~laGd~~~~ 275 (343)
..+..++++++.+.+++.|+++||.... .++.....+|... +..+.||... ..+....|+++|||||+.+..
T Consensus 371 ~~~~~~s~e~~~~~vl~~L~~~~g~~~~-~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~ 449 (487)
T PLN02676 371 RRIEQQPDSETKAEIMEVLRKMFGPNIP-EATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSE 449 (487)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhCCCCC-CcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEecccccc
Confidence 3456688999999999999999973222 4556566677432 2223345432 122334578899999999987
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274 276 RHGSWSQERSYVTGLEAANRVVDYLGD 302 (343)
Q Consensus 276 g~~~~~~ega~~Sg~~aA~~il~~~~~ 302 (343)
.++ ++|+||+.||++||++|++.+..
T Consensus 450 ~~~-g~~eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 450 KYN-GYVHGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred ccc-cchHHHHHHHHHHHHHHHHHhcc
Confidence 777 79999999999999999987753
No 22
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.82 E-value=3.4e-18 Score=154.21 Aligned_cols=241 Identities=15% Similarity=0.114 Sum_probs=153.5
Q ss_pred CceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH-Hhhhh
Q 019274 49 NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKN 126 (343)
Q Consensus 49 ~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~-~Ll~~ 126 (343)
...+.||+||++ .+++++++.++++|++|.+++.|++|..++ |+++||++. |.++.+..||+++.++.+. +|++.
T Consensus 253 ~g~~~Yp~GG~G-avs~aia~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~ 329 (561)
T KOG4254|consen 253 KGGWGYPRGGMG-AVSFAIAEGAKRAGAEIFTKATVQSILLDS--GKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPG 329 (561)
T ss_pred CCcccCCCCChh-HHHHHHHHHHHhccceeeehhhhhheeccC--CeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCC
Confidence 345679999975 699999999999999999999999999998 999999997 6788999999999999876 89999
Q ss_pred hcccCchhHHhhccCccc-ceEE----EEEEeccCCCCCCCccee---ecCC-------------C----CccceEee-c
Q 019274 127 SILCNREEFLKVLNLASI-DVVS----VKLWFDKKVTVPNVSNAC---SGFG-------------D----SLAWTFFD-L 180 (343)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~-~~~~----v~l~~~~~~~~~~~~~~~---~~~~-------------~----~~~~~~~d-~ 180 (343)
..++ .+ + .++++.+. ++.+ ..+..+..-..+.|+... +..+ . .....++. .
T Consensus 330 e~LP-ee-f-~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siP 406 (561)
T KOG4254|consen 330 EALP-EE-F-VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIP 406 (561)
T ss_pred ccCC-ch-h-hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecc
Confidence 8774 23 2 44555443 2221 223322221212221111 1100 0 00111122 1
Q ss_pred cccccccCCCCCeEEEEE-eeCCCCCCCC-------CHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCcccc----
Q 019274 181 NKIYDEHKDDSATVIQAD-FYHANELMPL-------KDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHF---- 248 (343)
Q Consensus 181 ~~~~~~~~~~~~~~i~~~-~~~~~~~~~~-------~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~---- 248 (343)
+.+.+.+.+++++++.+. .|....|... .+++..+++++.+++++|++++ .++...+- +|....++
T Consensus 407 S~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfss-sv~~~dvg-TP~t~qr~l~~~ 484 (561)
T KOG4254|consen 407 SSLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSS-SVESYDVG-TPPTHQRFLGRP 484 (561)
T ss_pred cccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccc-eEEEEecC-CCchhhHHhcCC
Confidence 334456776787876443 2322334322 3577899999999999999987 56554433 33322211
Q ss_pred ----CC---CCC---CCCCCC-----CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274 249 ----FP---GSY---KYMMRG-----FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 302 (343)
Q Consensus 249 ----~~---g~~---~~~p~~-----~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~ 302 (343)
.+ +.. -.+|-. .+|++|||+||+.+++|. ++.++. |+++|...+.+...
T Consensus 485 ~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGg---GV~a~a--G~~~A~~a~~~~~~ 548 (561)
T KOG4254|consen 485 GGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGG---GVMAAA--GRLAAHSAILDRKL 548 (561)
T ss_pred CCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCCC---Cccccc--hhHHHHHHhhhhhh
Confidence 11 111 124544 689999999999988764 444443 88888888776553
No 23
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.81 E-value=4.2e-18 Score=168.98 Aligned_cols=258 Identities=14% Similarity=0.146 Sum_probs=166.7
Q ss_pred eEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHH--hhhhhcc
Q 019274 52 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSIL 129 (343)
Q Consensus 52 ~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~--Ll~~~~~ 129 (343)
.....||+ +.|+++|++.+ .|++|++|++|...++ | | .|..+|++++||+||+|+|+..+.+ +.-.+.+
T Consensus 429 ~~~v~GG~-~~Li~aLa~~L-----~I~ln~~V~~I~~~~d-g-V-~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~L 499 (808)
T PLN02328 429 HCFIPGGN-DTFVRELAKDL-----PIFYERTVESIRYGVD-G-V-IVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPEL 499 (808)
T ss_pred EEEECCcH-HHHHHHHHhhC-----CcccCCeeEEEEEcCC-e-E-EEEeCCeEEEcCEEEECCCHHHHhhcccccCCCC
Confidence 44567995 67999998876 3999999999999873 3 3 4555678899999999999999874 2222223
Q ss_pred cCchhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCC---CC-cc-ce-EeeccccccccCCCCCeEEEEEee--C
Q 019274 130 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG---DS-LA-WT-FFDLNKIYDEHKDDSATVIQADFY--H 201 (343)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~---~~-~~-~~-~~d~~~~~~~~~~~~~~~i~~~~~--~ 201 (343)
+ ....++++++.+.++.++.+.|++++|.... . .+|+. .. .+ +. +++.+.. .++.++..... .
T Consensus 500 P-~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~-d-~fG~l~~d~s~rG~~~lf~s~s~~------~G~~vLvafv~G~~ 570 (808)
T PLN02328 500 P-QRKKDAIQRLGYGLLNKVALLFPYNFWGGEI-D-TFGHLTEDPSMRGEFFLFYSYSSV------SGGPLLIALVAGDA 570 (808)
T ss_pred C-HHHHHHHHcCCCcceEEEEEEeCCccccCCC-C-ceEEEeecCCCCceEEEEecCCCC------CCCcEEEEEecChh
Confidence 2 3456788999999999999999999884321 1 12211 10 11 11 1221110 23444433222 2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhccc--CCCCceeeeEEEecCCCcccc------CCCCCC-CCCCCCCC--CCCeEEee
Q 019274 202 ANELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLTHF------FPGSYK-YMMRGFTS--FPNLFMAG 270 (343)
Q Consensus 202 ~~~~~~~~~~e~~~~~~~~L~~~~p~--~~~~~~~~~~~~r~~~~~~~~------~~g~~~-~~p~~~~~--~~~L~laG 270 (343)
+..+..++++++++.+++.|+++|+. .....++...+++|....+.+ .+|... ..+....+ .++|||||
T Consensus 571 A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAG 650 (808)
T PLN02328 571 AVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAG 650 (808)
T ss_pred hHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEE
Confidence 33456778999999999999999963 111146677788896543322 233321 11112234 35899999
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHHHHHhCCCCcc--cccccCCCchhhhHHHHHHHHHHhhhc
Q 019274 271 DWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFS--KIIPVEEDEPHIEALRTVNRRFNEIRA 333 (343)
Q Consensus 271 d~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (343)
+++...++ ++|+||+.||.++|++|++.+.....+ +-....+ + .--++.+-|++++-
T Consensus 651 EaTs~~~~-GtVhGAi~SGlRAA~eIl~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~ 709 (808)
T PLN02328 651 EATNKQYP-ATMHGAFLSGMREAANILRVARRRSLCIDDKVNNDE--E---EDDCLDQLFDTPDL 709 (808)
T ss_pred hhHhCCCC-eEhHHHHHHHHHHHHHHHHHHhhcccCCcccccccc--h---hhhHHHHHhcCcCc
Confidence 99987777 799999999999999999987753322 2222222 1 22336788888764
No 24
>PLN02568 polyamine oxidase
Probab=99.81 E-value=1.2e-18 Score=168.66 Aligned_cols=281 Identities=15% Similarity=0.087 Sum_probs=176.5
Q ss_pred HHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHh--------cC-----C-----CceeEeecCCCchhhhHHHHHHHHH
Q 019274 12 RNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA--------HQ-----K-----NFDLVWCRGTLREKIFEPWMDSMRT 73 (343)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~--------~~-----~-----~~~~~~~~gG~~~~l~~~l~~~l~~ 73 (343)
+.+.+|+..++++..+++.+...++..+..+.-. .. . ......++|| ++.|+++|++.+.
T Consensus 176 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i~gG-~~~Li~~La~~L~- 253 (539)
T PLN02568 176 DSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITIAKG-YLSVIEALASVLP- 253 (539)
T ss_pred hhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEECCc-HHHHHHHHHhhCC-
Confidence 3445677788888888888777666655443100 00 0 0123346788 4679999999884
Q ss_pred cCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHH------hhhhhcccCchhHHhhccCcccce
Q 019274 74 RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQE------LIKNSILCNREEFLKVLNLASIDV 146 (343)
Q Consensus 74 ~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~------Ll~~~~~~~~~~~~~~~~l~~~~~ 146 (343)
+.+|++|++|++|..++ +.| .|++. |++++||+||+|+|+..+.+ +.-.+.+| ....++++++.+..+
T Consensus 254 -~~~I~ln~~V~~I~~~~--~~v-~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP-~~k~~Ai~~l~~g~~ 328 (539)
T PLN02568 254 -PGTIQLGRKVTRIEWQD--EPV-KLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLP-DFKTDAISRLGFGVV 328 (539)
T ss_pred -CCEEEeCCeEEEEEEeC--CeE-EEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCC-HHHHHHHHhcCCcee
Confidence 46899999999999887 444 46665 66899999999999999985 22222332 345678899999999
Q ss_pred EEEEEEeccCCCCCCC------cceeecCC-CC------ccceEeeccccccccCCCCCeEEEEEeeC--CCCCCCCCHH
Q 019274 147 VSVKLWFDKKVTVPNV------SNACSGFG-DS------LAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDD 211 (343)
Q Consensus 147 ~~v~l~~~~~~~~~~~------~~~~~~~~-~~------~~~~~~d~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 211 (343)
.++++.|++++|+... ...++..+ .. ..+.+-......+ .. .+..++..+... +..+..++++
T Consensus 329 ~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~vL~~~~~G~~A~~~e~l~~~ 406 (539)
T PLN02568 329 NKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICP-IH-KNSSVLLSWFAGKEALELEKLSDE 406 (539)
T ss_pred eEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccc-cC-CCCCEEEEEeccHHHHHHHcCCHH
Confidence 9999999999874210 00011000 00 0000000000001 00 133455443332 3456678999
Q ss_pred HHHHHHHHHHhhhcccCC---------------------CCceeeeEEEecCCC------ccccCCCCCC-CCCCCCCCC
Q 019274 212 QVVAKAVSYLSKCIKDFS---------------------TATVMDHKIRRFPKS------LTHFFPGSYK-YMMRGFTSF 263 (343)
Q Consensus 212 e~~~~~~~~L~~~~p~~~---------------------~~~~~~~~~~r~~~~------~~~~~~g~~~-~~p~~~~~~ 263 (343)
++.+.+++.|.++|+... ..+++...+++|... +....||... .+.....|+
T Consensus 407 ~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~~~~~La~P~ 486 (539)
T PLN02568 407 EIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGDDLDRMAEPL 486 (539)
T ss_pred HHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCCChhHHHHHhCcc
Confidence 999999999999997321 014556666778432 1112244322 111111233
Q ss_pred -------------CCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274 264 -------------PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 302 (343)
Q Consensus 264 -------------~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~ 302 (343)
++|||||..|+..|+ ++|+||+.||+++|++|++..++
T Consensus 487 ~~~~~~~~~~~~~~~l~FAGEat~~~~~-~Tv~GA~~SG~RaA~~i~~~~~~ 537 (539)
T PLN02568 487 PRISDHDQAGGPPLQLLFAGEATHRTHY-STTHGAYFSGLREANRLLQHYKC 537 (539)
T ss_pred ccccccccccCCCccEEEeecccCCCcc-chHHHHHHHHHHHHHHHHHHhcc
Confidence 369999999998888 79999999999999999987654
No 25
>PLN02976 amine oxidase
Probab=99.81 E-value=2.4e-18 Score=175.42 Aligned_cols=234 Identities=18% Similarity=0.183 Sum_probs=156.4
Q ss_pred EeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecC--------CCCeEEEEEEC-CeEEecCEEEEeeChhhHH--
Q 019274 53 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE--------ERCCISDVVCG-KETYSAGAVVLAVGISTLQ-- 121 (343)
Q Consensus 53 ~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~--------~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~-- 121 (343)
..++|| ++.|+++|++.+ .|++|++|++|.+.+ +++.| .|.+. |++++||+||+|+|+..+.
T Consensus 929 ~rIkGG-YqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGV-tVtTsDGetftADaVIVTVPLGVLKag 1001 (1713)
T PLN02976 929 CMIKGG-YSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKV-KVSTSNGSEFLGDAVLITVPLGCLKAE 1001 (1713)
T ss_pred EEeCCC-HHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcE-EEEECCCCEEEeceEEEeCCHHHhhhc
Confidence 346799 477999998765 499999999999842 00233 46665 6689999999999999987
Q ss_pred HhhhhhcccCchhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCCC----Ccc--ceEeeccccccccCCCCCeEE
Q 019274 122 ELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD----SLA--WTFFDLNKIYDEHKDDSATVI 195 (343)
Q Consensus 122 ~Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~----~~~--~~~~d~~~~~~~~~~~~~~~i 195 (343)
.+.-.+.|| .....++.++.+....++++.|++++|.... .++|... ..+ +.+++... ..+..++
T Consensus 1002 ~I~FsPPLP-e~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~--d~FG~s~edtdlrG~~~~~wnlr~------psG~pVL 1072 (1713)
T PLN02976 1002 TIKFSPPLP-DWKYSSIQRLGFGVLNKVVLEFPEVFWDDSV--DYFGATAEETDLRGQCFMFWNVKK------TVGAPVL 1072 (1713)
T ss_pred ccccCCccc-HHHHHHHHhhccccceEEEEEeCCccccCCC--CccccccccCCCCceEEEeccCCC------CCCCCEE
Confidence 233333443 3445778889999999999999999885321 1333211 011 11122111 0133444
Q ss_pred EEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCcc------ccCCCCCC-CCCCCCCCCCC-
Q 019274 196 QADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLT------HFFPGSYK-YMMRGFTSFPN- 265 (343)
Q Consensus 196 ~~~~~--~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~------~~~~g~~~-~~p~~~~~~~~- 265 (343)
...+. .+..+..++++++.+.+++.|.++||+.....++...+++|...-+ ...||... .+.....|+.|
T Consensus 1073 Vafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggR 1152 (1713)
T PLN02976 1073 IALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENC 1152 (1713)
T ss_pred EEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCc
Confidence 33332 2334567889999999999999999853212566777888854322 11244322 11222346666
Q ss_pred eEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCCC
Q 019274 266 LFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDG 303 (343)
Q Consensus 266 L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~~ 303 (343)
|||||+.+...|+ ++|+||+.||.+||++|+..+..|
T Consensus 1153 LFFAGEATS~~~p-GTVHGAIeSG~RAA~eIL~~L~~G 1189 (1713)
T PLN02976 1153 LFFAGEATCKEHP-DTVGGAMMSGLREAVRIIDILNTG 1189 (1713)
T ss_pred EEEEehhhhCCCc-chHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999988888 799999999999999999998764
No 26
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.77 E-value=5.7e-17 Score=147.98 Aligned_cols=233 Identities=15% Similarity=0.109 Sum_probs=159.1
Q ss_pred eecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC-eEEecCEEEEeeChhhHHHhhhhhcccCc
Q 019274 54 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELIKNSILCNR 132 (343)
Q Consensus 54 ~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g-~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~ 132 (343)
.+.||| +.|.+++++.+ |..|+++++|.+|.++++ .| .|+++. +++++|.||||+|+.++.+|--++.+ +.
T Consensus 203 ~~~GGm-d~la~Afa~ql---~~~I~~~~~V~rI~q~~~--gV-~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l-~~ 274 (450)
T COG1231 203 QRLGGM-DQLAEAFAKQL---GTRILLNEPVRRIDQDGD--GV-TVTADDVGQYVADYVLVTIPLAILGQIDFAPLL-PA 274 (450)
T ss_pred ccCccH-HHHHHHHHHHh---hceEEecCceeeEEEcCC--eE-EEEeCCcceEEecEEEEecCHHHHhhcccCCCC-CH
Confidence 344895 77999998777 679999999999999884 44 477776 89999999999999999877544433 24
Q ss_pred hhHHhhccCcccceEEEEEEeccCCCCCCC-cceeecCCCCccceEeeccccccccCCCCCeEEEEEee---CCCCCCCC
Q 019274 133 EEFLKVLNLASIDVVSVKLWFDKKVTVPNV-SNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY---HANELMPL 208 (343)
Q Consensus 133 ~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~ 208 (343)
.+.+++..+.|.+..++.+.|++++|.+.. .+...-.+... +.+...++. +. .+..++.-.+. .+..|..+
T Consensus 275 ~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~~-~~i~~~s~~---~~-~G~gVl~g~~~~g~~A~~~~~~ 349 (450)
T COG1231 275 EYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLGL-GFISYPSAP---FA-DGPGVLLGSYAFGDDALVIDAL 349 (450)
T ss_pred HHHHHhcCcCcchheeeeeecCchhhhhcccCCceEeecCCc-ceEecCccc---cC-CCceEEEeeeeccccceeEecC
Confidence 556777888999999999999999996543 11111012121 111111211 11 34455433222 34457789
Q ss_pred CHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCC------ccccCCCCCC-CCCCCCCCCCCeEEeeccccCCCCCcc
Q 019274 209 KDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS------LTHFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWS 281 (343)
Q Consensus 209 ~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~------~~~~~~g~~~-~~p~~~~~~~~L~laGd~~~~g~~~~~ 281 (343)
++++..+.++..+.++||+............+|... +..+.||... +-|....+.++++|||..+.+-++ +.
T Consensus 350 ~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~-Gw 428 (450)
T COG1231 350 PEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFG-GW 428 (450)
T ss_pred CHHHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeeccccccc-ch
Confidence 999999999999999999643323333356667443 2233445432 233344578899999944445777 79
Q ss_pred chHHHHHHHHHHHHHHHHh
Q 019274 282 QERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 282 ~ega~~Sg~~aA~~il~~~ 300 (343)
++||+.||++||.+|.+.+
T Consensus 429 ~eGAi~Sg~~AA~ei~~~l 447 (450)
T COG1231 429 LEGAIRSGQRAAAEIHALL 447 (450)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998764
No 27
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.75 E-value=1.5e-17 Score=149.52 Aligned_cols=280 Identities=13% Similarity=0.136 Sum_probs=192.6
Q ss_pred ccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHH--------------hcC---------------CCcee
Q 019274 2 IQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--------------AHQ---------------KNFDL 52 (343)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~--------------~~~---------------~~~~~ 52 (343)
-+++||+++.+++++|||.++|++|++++|+...+..++.... ... ....+
T Consensus 162 ~~RrfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~ 241 (491)
T KOG1276|consen 162 ARRRFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTM 241 (491)
T ss_pred HHHhhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccch
Confidence 4789999999999999999999999999999988877655310 000 01112
Q ss_pred EeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---C-eEEecCEEEEeeChhhHHHhhhhhc
Q 019274 53 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K-ETYSAGAVVLAVGISTLQELIKNSI 128 (343)
Q Consensus 53 ~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g-~~~~ad~VV~a~p~~~~~~Ll~~~~ 128 (343)
...+||+ +.+.+++.+.|.+..+.|.++-+++.+..... |+ |.+.+. + .....++++.++|+..+.+|++...
T Consensus 242 ~sl~gGl-e~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~-~~-~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~~~ 318 (491)
T KOG1276|consen 242 FSLKGGL-ETLPKALRKSLGEREVSISLGLKLSGNSKSRS-GN-WSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLRGLQ 318 (491)
T ss_pred hhhhhhH-hHhHHHHHHHhcccchhhhccccccccccccc-CC-ceeEeEcCCCceeeeccccccccchHHhhhhccccc
Confidence 2357896 78999999999999999999999999876553 44 445443 3 2445667777999999999988753
Q ss_pred ccCchhHHhhccCcccceEEEEEEeccC-CCC-CCCcceeecCCC-----CccceEeeccccccccCCCCCeEEEEEee-
Q 019274 129 LCNREEFLKVLNLASIDVVSVKLWFDKK-VTV-PNVSNACSGFGD-----SLAWTFFDLNKIYDEHKDDSATVIQADFY- 200 (343)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~v~l~~~~~-~~~-~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~i~~~~~- 200 (343)
+.....+..+.|.++..|++.|..+ ... ...++.+..... ..+ .+||... .+.-. +.. .+.+..+
T Consensus 319 ---~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG-~ifdS~~-Fp~~~-~s~-~vtvm~gg 391 (491)
T KOG1276|consen 319 ---NSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLG-TIFDSML-FPDRS-PSP-KVTVMMGG 391 (491)
T ss_pred ---hhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeE-EEeeccc-CCCCC-CCc-eEEEEecc
Confidence 2334667888999999999999874 221 123455544211 112 2677333 23222 111 3323222
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCC---C--CCCCeEEeecc
Q 019274 201 ---HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF---T--SFPNLFMAGDW 272 (343)
Q Consensus 201 ---~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~---~--~~~~L~laGd~ 272 (343)
........+.+++++.+.++|.+++.--. ++....++-|++++|+|+.|++......+ + +..+|+++|.|
T Consensus 392 ~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~--~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~ 469 (491)
T KOG1276|consen 392 GGSTNTSLAVPSPEELVNAVTSALQKMLGISN--KPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNH 469 (491)
T ss_pred cccccCcCCCCCHHHHHHHHHHHHHHHhCCCC--CcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccc
Confidence 11122345799999999999999986443 45566666699999999999876432221 2 33589999999
Q ss_pred ccCCCCCccchHHHHHHHHHHHHHH
Q 019274 273 ITTRHGSWSQERSYVTGLEAANRVV 297 (343)
Q Consensus 273 ~~~g~~~~~~ega~~Sg~~aA~~il 297 (343)
.. | .++..|++||..+|.+++
T Consensus 470 y~-G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 470 YG-G---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred cC-C---CChhHHHHhhHHHHHhhc
Confidence 76 3 367889999999998775
No 28
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.64 E-value=7.1e-15 Score=141.44 Aligned_cols=236 Identities=11% Similarity=0.047 Sum_probs=132.2
Q ss_pred ceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC-eEEecCEEEEeeChhhHHHhhhhhc
Q 019274 50 FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELIKNSI 128 (343)
Q Consensus 50 ~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g-~~~~ad~VV~a~p~~~~~~Ll~~~~ 128 (343)
..+.+|+||| +.|+++|++.++++|++|+++++|++|..++ |+.+++++.. +.+++|.||++..+.....+.+...
T Consensus 214 ~G~~~p~GG~-~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~--g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~~ 290 (487)
T COG1233 214 GGVFYPRGGM-GALVDALAELAREHGGEIRTGAEVSQILVEG--GKGVGVRTSDGENIEADAVVSNADPALLARLLGEAR 290 (487)
T ss_pred CCeeeeeCCH-HHHHHHHHHHHHHcCCEEECCCceEEEEEeC--CcceEEeccccceeccceeEecCchhhhhhhhhhhh
Confidence 4467899996 6799999999999999999999999999998 7766677664 5889999999999944444444321
Q ss_pred ccCchhHHhhccC-cccceEEEEEEeccCCCCCCCcceeecCCCC--c--c---------ceEee-ccccccccCCCCCe
Q 019274 129 LCNREEFLKVLNL-ASIDVVSVKLWFDKKVTVPNVSNACSGFGDS--L--A---------WTFFD-LNKIYDEHKDDSAT 193 (343)
Q Consensus 129 ~~~~~~~~~~~~l-~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~--~--~---------~~~~d-~~~~~~~~~~~~~~ 193 (343)
. .+...+. +..+....++.++........++.++..+.. . . +.+.. .+...+..++++.+
T Consensus 291 ----~-~~~~~~~~~~~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~ 365 (487)
T COG1233 291 ----R-PRYRGSYLKSLSALSLYLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKH 365 (487)
T ss_pred ----h-hccccchhhhhHHHHhccCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCc
Confidence 0 0111111 1223444555565531111112222221100 0 0 11111 11222334433433
Q ss_pred EEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccC--------------CCCCCCCC
Q 019274 194 VIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF--------------PGSYKYMM 257 (343)
Q Consensus 194 ~i~~~~~--~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~--------------~g~~~~~p 257 (343)
...+.+. +...+.+..++++.+. +..+++.+|++++ .++...+. +|.....+. .+....||
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-~iv~~~~~-tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp 442 (487)
T COG1233 366 STFAQLVPVPSLGDYDELKESLADA-IDALEELAPGLRD-RIVAREVL-TPLDLERYLGLPGGDIFGGAHTLDQLGPFRP 442 (487)
T ss_pred ceeeeeeecCcCCChHHHHHHHHHH-HHHHhhcCCCccc-ceeEEEEe-ChHHHHHhcCCCCCcccchhcChhhhcCCCC
Confidence 1111121 2111122234555555 6689999999987 66665554 332221111 01122355
Q ss_pred CC-CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 019274 258 RG-FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 299 (343)
Q Consensus 258 ~~-~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~ 299 (343)
.. .++++|||+||+++++| +++.++..++..++..+..+
T Consensus 443 ~~~~t~i~~LYl~Ga~t~PG---~Gv~g~~g~~~a~~~~~~~~ 482 (487)
T COG1233 443 PPKSTPIKGLYLVGASTHPG---GGVPGVPGSAAAVALLIDLD 482 (487)
T ss_pred CCCCCCcCceEEeCCcCCCC---CCcchhhhhHHHHHhhhccc
Confidence 44 47999999999999876 35556666666665555443
No 29
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.62 E-value=9.3e-15 Score=139.40 Aligned_cols=230 Identities=22% Similarity=0.250 Sum_probs=155.1
Q ss_pred ecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHH--hhhhhcccC
Q 019274 55 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQE--LIKNSILCN 131 (343)
Q Consensus 55 ~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~--Ll~~~~~~~ 131 (343)
..+|+ ..++..++. |..|+++++|.+|.+.++ +.+ .++.. +..+.+|+||+++|..++.. +-..+.+ +
T Consensus 214 ~~~G~-~~v~~~la~-----~l~I~~~~~v~~i~~~~~-~~~-~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~L-p 284 (501)
T KOG0029|consen 214 MKGGY-EPVVNSLAE-----GLDIHLNKRVRKIKYGDD-GAV-KVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPL-P 284 (501)
T ss_pred hhCCc-cHHHhhcCC-----CcceeeceeeEEEEEecC-Cce-EEEEECCCeeEeeEEEEEccHHHhccCceeeCCCC-c
Confidence 35774 446666654 889999999999999875 542 34443 44599999999999999976 3333333 2
Q ss_pred chhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCCC-Cc--cc--eEeeccccccccCCCCCeEEEEEee--CCCC
Q 019274 132 REEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD-SL--AW--TFFDLNKIYDEHKDDSATVIQADFY--HANE 204 (343)
Q Consensus 132 ~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~-~~--~~--~~~d~~~~~~~~~~~~~~~i~~~~~--~~~~ 204 (343)
...+++++++....+.++.+.|++.+|.+ ...+++... .. .. .+++.. +. .+..++..... .+..
T Consensus 285 ~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~--~~d~fg~~~~~~~~~~~~~f~~~~---~~---~~~~~l~~~~~~~~a~~ 356 (501)
T KOG0029|consen 285 RWKQEAIDRLGFGLVNKVILEFPRVFWDQ--DIDFFGIVPETSVLRGLFTFYDCK---PV---AGHPVLMSVVVGEAAER 356 (501)
T ss_pred HHHHHHHHhcCCCceeEEEEEeccccCCC--CcCeEEEccccccccchhhhhhcC---cc---CCCCeEEEEehhhhhHH
Confidence 45568899999999999999999999942 222443321 11 11 112211 11 12223222222 3445
Q ss_pred CCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccc------cCCCCCCC-CCCCCCCCCC-eEEeeccccCC
Q 019274 205 LMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTH------FFPGSYKY-MMRGFTSFPN-LFMAGDWITTR 276 (343)
Q Consensus 205 ~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~------~~~g~~~~-~p~~~~~~~~-L~laGd~~~~g 276 (343)
+..++++++++.++..|+++|++.....+++..+.+|...... ..++.... ...+..++.| +||||.+|...
T Consensus 357 ~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~ 436 (501)
T KOG0029|consen 357 VETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRK 436 (501)
T ss_pred HhcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhccc
Confidence 6778999999999999999999433336778888888533221 11221111 1223457788 99999999888
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhCC
Q 019274 277 HGSWSQERSYVTGLEAANRVVDYLGD 302 (343)
Q Consensus 277 ~~~~~~ega~~Sg~~aA~~il~~~~~ 302 (343)
++ ++|+||+.||.++|..|+..+..
T Consensus 437 ~~-~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 437 YP-GTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred CC-CchHHHHHhhHHHHHHHHHHHHh
Confidence 88 79999999999999999998874
No 30
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.60 E-value=2.1e-15 Score=128.15 Aligned_cols=219 Identities=15% Similarity=0.103 Sum_probs=145.0
Q ss_pred CCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-C-eEEecCEEEEeeChhhHHHhhhhh--cccCc
Q 019274 57 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K-ETYSAGAVVLAVGISTLQELIKNS--ILCNR 132 (343)
Q Consensus 57 gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g-~~~~ad~VV~a~p~~~~~~Ll~~~--~~~~~ 132 (343)
-||+ .|.+.|+. ..+|+++++|++|.+.+ + .|.+.++ | +..++|.||+|+|++++..||... .++ .
T Consensus 105 pgms-alak~LAt-----dL~V~~~~rVt~v~~~~--~-~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p-~ 174 (331)
T COG3380 105 PGMS-ALAKFLAT-----DLTVVLETRVTEVARTD--N-DWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLP-A 174 (331)
T ss_pred cchH-HHHHHHhc-----cchhhhhhhhhhheecC--C-eeEEEecCCCcccccceEEEecCCCcchhhcCcccccch-H
Confidence 3543 35554443 45899999999999885 4 4888885 3 578999999999999999888652 221 3
Q ss_pred hhHHhhccCcccceEEEEEEeccCCCCCCCcceeecCCCCccceEeeccccccccCCCCCeEEEEEee--CCCCCCCCCH
Q 019274 133 EEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKD 210 (343)
Q Consensus 133 ~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~ 210 (343)
..+..+..+.|.|++.+.++|.++...+.+. ++. .+..+.|.--|.+. +... |.+.++.+... .+.++.+.++
T Consensus 175 ~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G-~~v-dg~~laWla~d~sK--~g~~-p~~~~~vvqasp~wSr~h~~~~~ 249 (331)
T COG3380 175 ALRAALADVVYAPCWSAVLGYPQPLDRPWPG-NFV-DGHPLAWLARDASK--KGHV-PDGEIWVVQASPDWSREHLDHPA 249 (331)
T ss_pred HHHHhhccceehhHHHHHhcCCccCCCCCCC-ccc-CCCeeeeeeccccC--CCCC-CcCceEEEEeCchHHHHhhcCCH
Confidence 3557778889999988889999887644332 221 12234563333332 1111 23333333333 2344556678
Q ss_pred HHHHHHHHHHHhhhcc-cCCCCceeeeEEEecCCCccccCCCCCCCCCCCC-CCCCCeEEeeccccCCCCCccchHHHHH
Q 019274 211 DQVVAKAVSYLSKCIK-DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVT 288 (343)
Q Consensus 211 ~e~~~~~~~~L~~~~p-~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~-~~~~~L~laGd~~~~g~~~~~~ega~~S 288 (343)
++.+..+.......++ .+. ++.....++|+++.|.-..+. +... ..-.+||+||||+++ +-+|||..|
T Consensus 250 e~~i~~l~aA~~~~~~~~~~--~p~~s~~H~WrYA~P~~~~~~----~~L~ad~~~~l~~cGDwc~G----grVEgA~LS 319 (331)
T COG3380 250 EQVIVALRAAAQELDGDRLP--EPDWSDAHRWRYAIPNDAVAG----PPLDADRELPLYACGDWCAG----GRVEGAVLS 319 (331)
T ss_pred HHHHHHHHHhhhhccCCCCC--cchHHHhhccccccccccccC----CccccCCCCceeeecccccC----cchhHHHhc
Confidence 8888777777777776 444 466667788999887543332 1111 234689999999873 478999999
Q ss_pred HHHHHHHHHHHh
Q 019274 289 GLEAANRVVDYL 300 (343)
Q Consensus 289 g~~aA~~il~~~ 300 (343)
|..+|++|+..+
T Consensus 320 GlAaA~~i~~~L 331 (331)
T COG3380 320 GLAAADHILNGL 331 (331)
T ss_pred cHHHHHHHHhcC
Confidence 999999998753
No 31
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.53 E-value=1e-13 Score=126.87 Aligned_cols=239 Identities=17% Similarity=0.212 Sum_probs=149.5
Q ss_pred eecCCCchhhhHHHHHHHHHc----C--CeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHH----
Q 019274 54 WCRGTLREKIFEPWMDSMRTR----G--CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQE---- 122 (343)
Q Consensus 54 ~~~gG~~~~l~~~l~~~l~~~----G--~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~---- 122 (343)
+...| ...+.+-|++.+.+. | .+++++++|.+|..+++ ++| .|++. |+.+.||+||||++...+.+
T Consensus 217 ~~~kG-y~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~-~~v-~l~c~dg~v~~adhVIvTvsLGvLk~~h~~ 293 (498)
T KOG0685|consen 217 WNKKG-YKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNT-GEV-KLRCSDGEVFHADHVIVTVSLGVLKEQHHK 293 (498)
T ss_pred echhH-HHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCC-CcE-EEEEeCCcEEeccEEEEEeechhhhhhhhh
Confidence 33456 456778777755421 2 35667799999999875 665 47775 78899999999999999875
Q ss_pred hhhhhcccCchhHHhhccCcccceEEEEEEeccCCCCCCCcc-eeecCCCC--------ccceEeeccccccccCCCCCe
Q 019274 123 LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN-ACSGFGDS--------LAWTFFDLNKIYDEHKDDSAT 193 (343)
Q Consensus 123 Ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~d~~~~~~~~~~~~~~ 193 (343)
|+.++ +| ....++|.++....+.+++|.|.+++|.+.... .++-.+.. ..|. =+.....+- . ....
T Consensus 294 lF~P~-LP-~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~-~~~~~f~~v-~-~~~~ 368 (498)
T KOG0685|consen 294 LFVPP-LP-AEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWE-EDIMGFQPV-S-WAPN 368 (498)
T ss_pred hcCCC-CC-HHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHH-hhceEEEEc-C-cchh
Confidence 55443 43 566789999999999999999999998542111 11111111 0010 000000000 0 1224
Q ss_pred EEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCC-----Ccccc-CCCCCC------CCCCC
Q 019274 194 VIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPK-----SLTHF-FPGSYK------YMMRG 259 (343)
Q Consensus 194 ~i~~~~~--~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~-----~~~~~-~~g~~~------~~p~~ 259 (343)
++..++. .+..+..++++++.+.+...|+++.++..-.++....-..|.. +-|.| .+|+.. ..|..
T Consensus 369 vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p 448 (498)
T KOG0685|consen 369 VLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLP 448 (498)
T ss_pred hhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCC
Confidence 5544443 3445678999999999999999999765322333322233421 11222 122111 11211
Q ss_pred ---CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274 260 ---FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 260 ---~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
.++-+.+.|||..|+-.+. .++.||+.||++.|++|+...+
T Consensus 449 ~~~~~~~p~I~FAGEaThr~~Y-sTthGA~~SG~REA~RL~~~y~ 492 (498)
T KOG0685|consen 449 LTLVTGRPQILFAGEATHRTFY-STTHGAVLSGWREADRLLEHYE 492 (498)
T ss_pred ccccCCCceEEEccccccccce-ehhhhhHHhhHHHHHHHHHHHH
Confidence 1245689999999986555 6999999999999999998654
No 32
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.23 E-value=4.4e-11 Score=105.45 Aligned_cols=139 Identities=16% Similarity=0.070 Sum_probs=104.2
Q ss_pred CccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCC-----CceeEeecCCCchhhhHHHHHHHHHcC
Q 019274 1 MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK-----NFDLVWCRGTLREKIFEPWMDSMRTRG 75 (343)
Q Consensus 1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~-----~~~~~~~~gG~~~~l~~~l~~~l~~~G 75 (343)
|+++++|.-+.++++.|+.+++|+++..+.+..-+..++.+.. .+.. .-.+....|| +...++.|+..+ +
T Consensus 157 L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~-nhGll~l~~rp~wrtV~gg-S~~yvq~laa~~---~ 231 (447)
T COG2907 157 LKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTD-NHGLLYLPKRPTWRTVAGG-SRAYVQRLAADI---R 231 (447)
T ss_pred HHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHh-ccCceecCCCCceeEcccc-hHHHHHHHhccc---c
Confidence 5789999999999999999999999999988766666554331 2211 1112234577 677888777665 6
Q ss_pred CeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhccCcccceEEE
Q 019274 76 CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSV 149 (343)
Q Consensus 76 ~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~l~~~~~~~v 149 (343)
++|.++++|..|.+-.+ | |+-+..+|++.++|.||.|+.+++...||+++. +.+++.+..+.|+....|
T Consensus 232 ~~i~t~~~V~~l~rlPd-G-v~l~~~~G~s~rFD~vViAth~dqAl~mL~e~s---p~e~qll~a~~Ys~n~aV 300 (447)
T COG2907 232 GRIETRTPVCRLRRLPD-G-VVLVNADGESRRFDAVVIATHPDQALALLDEPS---PEERQLLGALRYSANTAV 300 (447)
T ss_pred ceeecCCceeeeeeCCC-c-eEEecCCCCccccceeeeecChHHHHHhcCCCC---HHHHHHHHhhhhhhceeE
Confidence 78999999999999885 6 343444588889999999999999999998864 455667788888754444
No 33
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.18 E-value=8.3e-09 Score=99.18 Aligned_cols=284 Identities=14% Similarity=0.131 Sum_probs=155.6
Q ss_pred hhhcCCcccccHHHHHHHHHHHHH---hcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCC--CCe
Q 019274 21 VGLFAPAEQCSAAATLGILYFIIL---AHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCC 95 (343)
Q Consensus 21 ~~~~~~~~~~sa~~~~~~l~~~~~---~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~--~g~ 95 (343)
..+++..+..||+.+..++.+++. +-...+.+.+.+....++|+++|.++|+++|++|+++++|++|..+.+ .++
T Consensus 183 ~t~FaF~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~ 262 (576)
T PRK13977 183 RTMFAFEKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKT 262 (576)
T ss_pred HHHHCCchhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceE
Confidence 344677799999999999988731 112234444556666799999999999999999999999999998522 156
Q ss_pred EEEEEEC--C--e---EEecCEEEEeeChhhHHHhhhhhccc-------CchhH--Hhhcc----Cc----------ccc
Q 019274 96 ISDVVCG--K--E---TYSAGAVVLAVGISTLQELIKNSILC-------NREEF--LKVLN----LA----------SID 145 (343)
Q Consensus 96 v~~V~~~--g--~---~~~ad~VV~a~p~~~~~~Ll~~~~~~-------~~~~~--~~~~~----l~----------~~~ 145 (343)
|++|.+. | + ....|.||+|++.-+-..-+.+..-+ ...|. +.+.+ +. -+.
T Consensus 263 VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns~~G~~~~p~~~~~~~~~~w~LW~~la~~~~~fG~P~~F~~~~~~s~ 342 (576)
T PRK13977 263 ATAIHLTRNGKEETIDLTEDDLVFVTNGSITESSTYGDMDTPAPLNRELGGSWTLWKNIAAQSPEFGNPDKFCGDIPESN 342 (576)
T ss_pred EEEEEEEeCCceeEEEecCCCEEEEeCCcCccccccCCCCCCCCCCCCCCccHHHHHHHHhcCccCCChhhhcCCcccce
Confidence 8888773 2 2 23688999999876543222221000 01111 11211 11 011
Q ss_pred eEEEEEEeccC-C-------CCCCCcc------eeecCCCCccceEeecc-ccccccCCCCCeEEEEEee---C------
Q 019274 146 VVSVKLWFDKK-V-------TVPNVSN------ACSGFGDSLAWTFFDLN-KIYDEHKDDSATVIQADFY---H------ 201 (343)
Q Consensus 146 ~~~v~l~~~~~-~-------~~~~~~~------~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~i~~~~~---~------ 201 (343)
.....+-++.+ + ....|.. .+..+. .++|. .+.+ ..+|-+.+.+..+..++.| +
T Consensus 343 w~SfTvT~~~~~~~~~i~~~t~~~p~~g~~~tg~~vt~~-dS~W~-~s~~v~~QP~F~~Qp~d~~v~WgY~l~~~~~G~y 420 (576)
T PRK13977 343 WESFTVTTKDPKILPYIERITGRDPGSGKTVTGGIVTFK-DSNWL-MSITVNRQPHFKNQPKNETVVWGYGLYPDRPGNY 420 (576)
T ss_pred EEEEEEEcCCHHHHHHHHHHhCCCCCCCccccCceeEEe-cCCee-EEEEecCCCCCCCCCCCcEEEEEEecccCCCCCc
Confidence 11111111111 0 0001111 111111 12342 2211 1124444434444444443 2
Q ss_pred -CCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEE----ecCCCccccCCCCCCCCCCCCC-CCCCeEEeeccccC
Q 019274 202 -ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIR----RFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITT 275 (343)
Q Consensus 202 -~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~----r~~~~~~~~~~g~~~~~p~~~~-~~~~L~laGd~~~~ 275 (343)
...+.+++.+||.++++-+|. +|.-.-.++....+. -.|..+..+.|.....||.... +..||-|.|.++..
T Consensus 421 vkKpm~~CtG~Ei~~E~l~Hl~--~~~~~~~~i~~~~~~~ip~~MP~ita~f~pR~~gDRP~VvP~g~~Nla~iGqFvE~ 498 (576)
T PRK13977 421 VKKPMRECTGEEILQELLYHLG--VPEDKIEELAADSANTIPVMMPYITSQFMPRAKGDRPLVVPEGSTNLAFIGQFAET 498 (576)
T ss_pred cCCchhhCCHHHHHHHHHHhcC--CchhhHHHHHhhcCceEeeccchhhhhhCCCCCCCCCCcCCCCcceeeeeeccccC
Confidence 124567899999999988883 221000011101111 1244444445554445776653 56799999999874
Q ss_pred CCC-CccchHHHHHHHHHHHHHHHHhCCCCcccccc
Q 019274 276 RHG-SWSQERSYVTGLEAANRVVDYLGDGSFSKIIP 310 (343)
Q Consensus 276 g~~-~~~~ega~~Sg~~aA~~il~~~~~~~~~~~~~ 310 (343)
... +-++|.++.+|+.|+-.+++--+ ..+++++
T Consensus 499 p~d~vft~eysvRta~~AVy~L~~~~~--~~~~v~~ 532 (576)
T PRK13977 499 PRDTVFTTEYSVRTAMEAVYTLLGVDR--GVPEVFP 532 (576)
T ss_pred CCCEEEEEehhhHHHHHHHHHHhCCCC--CCCCcCc
Confidence 222 26899999999999999877532 3444454
No 34
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.67 E-value=4.1e-06 Score=76.96 Aligned_cols=195 Identities=12% Similarity=0.121 Sum_probs=109.8
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhcc
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN 140 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~ 140 (343)
..++..|++.+++.|++++.+++|++|..++ +++++|.+++++++||.||+|+++++-. |.+ ++
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~~~~g~~~a~~vV~a~G~~~~~-l~~---~~---------- 200 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEIRG--EKVTAIVTPSGDVQADQVVLAAGAWAGE-LLP---LP---------- 200 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEeeC--CEEEEEEcCCCEEECCEEEEcCChhhhh-ccc---CC----------
Confidence 5688999999999999999999999999877 6777888876689999999999998754 433 10
Q ss_pred CcccceEEEEEEeccCCCC--CCCcceeecCCCCccceEeeccccccccCCCCCeEEEEEeeCCCCCCCCCHHHHHHHHH
Q 019274 141 LASIDVVSVKLWFDKKVTV--PNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAV 218 (343)
Q Consensus 141 l~~~~~~~v~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~ 218 (343)
+.... ...+.++.+... ..+..... .+ . ..++ .+. +.+.++.-.......+....+++..+.++
T Consensus 201 ~~~~~--g~~~~~~~~~~~~~~~~~~~~~-~~-~--~~y~-----~p~---~~g~~~iG~~~~~~~~~~~~~~~~~~~l~ 266 (337)
T TIGR02352 201 LRPVR--GQPLRLEAPAVPLLNRPLRAVV-YG-R--RVYI-----VPR---RDGRLVVGATMEESGFDTTPTLGGIKELL 266 (337)
T ss_pred ccccC--ceEEEeeccccccCCcccceEE-Ec-C--CEEE-----EEc---CCCeEEEEEeccccCccCCCCHHHHHHHH
Confidence 11111 111222221100 00100000 00 0 0011 010 12333221211112222223456788899
Q ss_pred HHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCC--CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHH
Q 019274 219 SYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF--TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRV 296 (343)
Q Consensus 219 ~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~--~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~i 296 (343)
+.+.++||.+.+.++... |.. +..+++++ .|... ...+|+|+++.+ .|+ ++--+...|+.+|+.|
T Consensus 267 ~~~~~~~P~l~~~~~~~~----~~g-~r~~t~D~---~piig~~~~~~~~~~~~g~--~g~---G~~~~p~~g~~la~~i 333 (337)
T TIGR02352 267 RDAYTILPALKEARLLET----WAG-LRPGTPDN---LPYIGEHPEDRRLLIATGH--YRN---GILLAPATAEVIADLI 333 (337)
T ss_pred HHHHHhCCCcccCcHHHh----eec-CCCCCCCC---CCEeCccCCCCCEEEEccc--ccC---ceehhhHHHHHHHHHH
Confidence 999999999865343222 211 11223332 23221 235799998766 233 3455788999999988
Q ss_pred HH
Q 019274 297 VD 298 (343)
Q Consensus 297 l~ 298 (343)
+.
T Consensus 334 ~~ 335 (337)
T TIGR02352 334 LG 335 (337)
T ss_pred hc
Confidence 74
No 35
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.65 E-value=2.7e-06 Score=78.48 Aligned_cols=63 Identities=24% Similarity=0.282 Sum_probs=52.4
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN 126 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~ 126 (343)
..++++|.+.+++.|++|+.+++|++|..++ +++.+|.++++.+.||.||+|++++... |++.
T Consensus 147 ~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~g~i~ad~vV~a~G~~s~~-l~~~ 209 (358)
T PF01266_consen 147 RRLIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTSDGEIRADRVVLAAGAWSPQ-LLPL 209 (358)
T ss_dssp HHHHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEETTEEEEECEEEE--GGGHHH-HHHT
T ss_pred cchhhhhHHHHHHhhhhccccccccchhhcc--cccccccccccccccceeEeccccccee-eeec
Confidence 5699999999999999999999999999998 7888899987679999999999997654 5544
No 36
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.64 E-value=2.1e-07 Score=88.32 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=74.7
Q ss_pred CccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHH--HhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeE
Q 019274 1 MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF 78 (343)
Q Consensus 1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i 78 (343)
|++++++++..+.+..-+. ..+.....+.++...+..+..++ ++..+.+.+.||.||+ ..|+++|++.+...|+++
T Consensus 172 L~~~~ls~~~~d~i~~~ia-l~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG~-g~L~qal~r~~a~~Gg~~ 249 (443)
T PTZ00363 172 YKKFGLEDNTIDFVGHAVA-LYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYGL-GGLPQAFSRLCAIYGGTY 249 (443)
T ss_pred HHHhCCCHHHHHHHHHHHH-hhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCCH-HHHHHHHHHHHHHcCcEE
Confidence 3567777776663322222 11111112233444444333332 1222233457899996 569999999999999999
Q ss_pred EcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeCh
Q 019274 79 LDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 117 (343)
Q Consensus 79 ~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~ 117 (343)
+++++|++|..+++ |++++|+++ |++++|+.||++.+.
T Consensus 250 ~L~~~V~~I~~~~~-g~~~~V~~~~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 250 MLNTPVDEVVFDEN-GKVCGVKSEGGEVAKCKLVICDPSY 288 (443)
T ss_pred EcCCeEEEEEEcCC-CeEEEEEECCCcEEECCEEEECccc
Confidence 99999999998764 678889885 778999999996543
No 37
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.57 E-value=1.2e-05 Score=76.34 Aligned_cols=200 Identities=12% Similarity=0.016 Sum_probs=107.1
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhcc
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN 140 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~ 140 (343)
..++++|.+.+++.|++|+++++|++|..++ +++++|++++.+++||+||+|++++... +++..... .+ +..
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~~~~~~a~~VV~a~G~~~~~-l~~~~g~~-~p----i~p 272 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTGGGVITADAYVVALGSYSTA-LLKPLGVD-IP----VYP 272 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeCCcEEeCCEEEECCCcchHH-HHHHhCCC-cc----cCC
Confidence 3678899999999999999999999999877 6667788887789999999999998642 43321100 00 111
Q ss_pred CcccceEEEEEEeccCCCCCCCcceeecCCCCccceEeeccccccccCCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHH
Q 019274 141 LASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSY 220 (343)
Q Consensus 141 l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~ 220 (343)
.+. ..+.+-.+.... .+...+. +... ...+ .+ .++.++.........+....+.+..+.+.+.
T Consensus 273 ~rg---~~~~~~~~~~~~--~p~~~~~--~~~~-~~~~-----~~----~~~~~~iG~~~~~~~~~~~~~~~~~~~l~~~ 335 (416)
T PRK00711 273 LKG---YSLTVPITDEDR--APVSTVL--DETY-KIAI-----TR----FDDRIRVGGMAEIVGFDLRLDPARRETLEMV 335 (416)
T ss_pred ccc---eEEEEecCCCCC--CCceeEE--eccc-CEEE-----ee----cCCceEEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 111 111111111111 1110010 0000 0001 00 1222221111111111222235567788888
Q ss_pred HhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCC-CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 221 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 221 L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~-~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
+.++||.+.+..+... |..- ..++++.. |..- .+.+|+|++..+. |+ ++.-+..+|+.+|+.|+.
T Consensus 336 ~~~~~P~l~~~~~~~~----w~G~-r~~t~D~~---PiIG~~~~~gl~~a~G~~--g~---G~~~ap~~g~~la~li~g 401 (416)
T PRK00711 336 VRDLFPGGGDLSQATF----WTGL-RPMTPDGT---PIVGATRYKNLWLNTGHG--TL---GWTMACGSGQLLADLISG 401 (416)
T ss_pred HHHHCCCcccccccce----eecc-CCCCCCCC---CEeCCcCCCCEEEecCCc--hh---hhhhhhhHHHHHHHHHcC
Confidence 9999999865333322 3221 12333332 2111 1358999987662 33 345588899999988875
No 38
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.44 E-value=5e-05 Score=71.46 Aligned_cols=272 Identities=15% Similarity=0.115 Sum_probs=143.9
Q ss_pred HHHhhhcCCcccccHHHHHHHHHHHHHhcCC---CceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCC
Q 019274 18 LVQVGLFAPAEQCSAAATLGILYFIILAHQK---NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC 94 (343)
Q Consensus 18 ~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~---~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g 94 (343)
+++.++++.-...||.++-.++.+++..-++ ...+...+-..+++++.+|.++|+++|+++++|++|+.|..+.+++
T Consensus 161 ~~W~T~FAFqpWhSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~ 240 (500)
T PF06100_consen 161 YMWSTMFAFQPWHSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGD 240 (500)
T ss_pred HhHHHhhccCcchhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCC
Confidence 4556677888899999999999887522111 1122223334478999999999999999999999999998864312
Q ss_pred -e-EEEEEEC--C--eEE---ecCEEEEeeChhhHHHhhhhhccc-------CchhH--Hhhcc----Cc----------
Q 019274 95 -C-ISDVVCG--K--ETY---SAGAVVLAVGISTLQELIKNSILC-------NREEF--LKVLN----LA---------- 142 (343)
Q Consensus 95 -~-v~~V~~~--g--~~~---~ad~VV~a~p~~~~~~Ll~~~~~~-------~~~~~--~~~~~----l~---------- 142 (343)
+ ++.+.+. | +++ +-|.|+++.+.-+-..-..+..-+ ...|. +.+.+ +.
T Consensus 241 ~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t~~s~~G~~~~p~~~~~~~~~~W~LW~~la~k~~~FG~P~~F~~~~~ 320 (500)
T PF06100_consen 241 KKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMTEGSTYGDNDTPPPLNKELGGSWSLWKNLAAKSPDFGNPEKFCTRIP 320 (500)
T ss_pred CeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccccccccCCCCCCCCCCCCCCchHHHHHHHHhcCcCCCChhhhcCCcc
Confidence 2 4455442 3 233 467888888754332211111000 01111 11211 11
Q ss_pred ccce-EEEEEEeccC-C-------CCCCC------cceeecCCCCccceEeecc-ccccccCCCCCeEEEEEee---C--
Q 019274 143 SIDV-VSVKLWFDKK-V-------TVPNV------SNACSGFGDSLAWTFFDLN-KIYDEHKDDSATVIQADFY---H-- 201 (343)
Q Consensus 143 ~~~~-~~v~l~~~~~-~-------~~~~~------~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~i~~~~~---~-- 201 (343)
-+.. ....+-++.+ + ....| .+.+..+. .++|. .+.+ ...|-+.+.+..+..++.| +
T Consensus 321 ~s~w~eSfTvT~~d~~~~~~i~~lt~~~p~~g~~~tGgliT~~-DS~Wl-mS~~i~~QP~F~~QP~dv~V~WgYgL~pd~ 398 (500)
T PF06100_consen 321 ESKWFESFTVTLKDPKFFDYIEKLTGNDPYSGKVGTGGLITFK-DSNWL-MSITIPRQPHFPDQPEDVQVFWGYGLFPDK 398 (500)
T ss_pred cceeEEEEEEEecChHHHHHHHHHHCCCCCcCccCcCceeEec-cCCeE-EEEEECCCCccCCCCCCeEEEEEEecccCC
Confidence 0111 1111112211 0 00011 11111111 12342 2211 1124444444455445544 2
Q ss_pred -----CCCCCCCCHHHHHHHHHHHHhhhcccCCCCceeeeEEEe----cCCCccccCCCCCCCCCCCCC-CCCCeEEeec
Q 019274 202 -----ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRR----FPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGD 271 (343)
Q Consensus 202 -----~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r----~~~~~~~~~~g~~~~~p~~~~-~~~~L~laGd 271 (343)
...+.+++.+||.++++.+|. +|.-....+....+.. .|..+..+.|.....||.... +..||-|.|.
T Consensus 399 ~GnyVkKpM~eCtG~EIl~ElL~HLg--~~~~~~~~~~~~~~~tiP~~MP~its~fmpR~~gDRP~VvP~g~~NlafiGQ 476 (500)
T PF06100_consen 399 EGNYVKKPMLECTGEEILTELLYHLG--FPDDEIEELAKQSTNTIPCMMPYITSQFMPRAKGDRPQVVPEGSTNLAFIGQ 476 (500)
T ss_pred CCCccCCchhhCChHHHHHHHHHhcC--CChhhhhHhhccCceEEEeccccchhhccCCCCCCCCCcCCCCcceeEEEEc
Confidence 124567889999999998886 4432110111011111 244444455555555776654 5679999999
Q ss_pred cccCCCC-CccchHHHHHHHHHH
Q 019274 272 WITTRHG-SWSQERSYVTGLEAA 293 (343)
Q Consensus 272 ~~~~g~~-~~~~ega~~Sg~~aA 293 (343)
++..... +-++|.++.+|+.|+
T Consensus 477 FvE~p~D~vfT~EYSVRtA~~AV 499 (500)
T PF06100_consen 477 FVEIPRDTVFTVEYSVRTAQEAV 499 (500)
T ss_pred ccccCCCEEEEEeehhhhhhhhc
Confidence 9874222 258999999999875
No 39
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.27 E-value=0.00017 Score=68.23 Aligned_cols=197 Identities=14% Similarity=0.174 Sum_probs=105.4
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHH--HhhhhhcccCchhHHhhc
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSILCNREEFLKVL 139 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~--~Ll~~~~~~~~~~~~~~~ 139 (343)
.++.+|++.+++.|++++.+++|++|..+++ +++++|++++.++.+++||++++++... +++... ++
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~~~v~t~~g~i~a~~vVvaagg~~~~l~~~~g~~-~~--------- 252 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDG-GRVIGVETTRGFIGAKKVGVAVAGHSSVVAAMAGFR-LP--------- 252 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEeCCceEECCEEEECCChhhHHHHHHcCCC-CC---------
Confidence 4667788888999999999999999986532 5667788876689999999999887642 221111 10
Q ss_pred cCcccceEEEEEEeccCCCCCCCcceeecCCCCccceEeeccccccccCCCCCeEEEEEeeC-CCCCCCCCHHHHHHHHH
Q 019274 140 NLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH-ANELMPLKDDQVVAKAV 218 (343)
Q Consensus 140 ~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~e~~~~~~ 218 (343)
+.... ..+.+..+.. +.....+.. . . ...++- + .+++.++...... ........+.+..+.++
T Consensus 253 -~~~~~---~~~~~~~~~~-~~~~~~~~~-~-~-~~~y~~-----p---~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~ 316 (407)
T TIGR01373 253 -IESHP---LQALVSEPLK-PIIDTVVMS-N-A-VHFYVS-----Q---SDKGELVIGGGIDGYNSYAQRGNLPTLEHVL 316 (407)
T ss_pred -cCccc---ceEEEecCCC-CCcCCeEEe-C-C-CceEEE-----E---cCCceEEEecCCCCCCccCcCCCHHHHHHHH
Confidence 00110 1111122221 100011110 0 0 011110 1 0233333221111 11111223456788899
Q ss_pred HHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCC-CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHH
Q 019274 219 SYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG-FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 297 (343)
Q Consensus 219 ~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~-~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il 297 (343)
+.+.++||.+.+..+. ..|.. ...++|+.. |.. ..+.+|+|++..+. |+| +..|..+|+.+|+.|+
T Consensus 317 ~~~~~~~P~l~~~~~~----~~w~G-~~~~t~D~~---PiIg~~~~~gl~~a~G~~--g~G---~~~ap~~G~~la~li~ 383 (407)
T TIGR01373 317 AAILEMFPILSRVRML----RSWGG-IVDVTPDGS---PIIGKTPLPNLYLNCGWG--TGG---FKATPASGTVFAHTLA 383 (407)
T ss_pred HHHHHhCCCcCCCCeE----EEecc-ccccCCCCC---ceeCCCCCCCeEEEeccC--Ccc---hhhchHHHHHHHHHHh
Confidence 9999999998653332 22422 223344433 222 12358999987652 343 4457888999998886
Q ss_pred H
Q 019274 298 D 298 (343)
Q Consensus 298 ~ 298 (343)
.
T Consensus 384 ~ 384 (407)
T TIGR01373 384 R 384 (407)
T ss_pred C
Confidence 4
No 40
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.23 E-value=5.7e-05 Score=72.69 Aligned_cols=56 Identities=16% Similarity=0.035 Sum_probs=46.5
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~ 120 (343)
..++++|++.+++.|++|+.+++|++|.. + + .+.|++++++++||+||+|++++..
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~-~~~v~t~~g~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEE-G--Q-PAVVRTPDGQVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEee-C--C-ceEEEeCCcEEECCEEEEccccccc
Confidence 45789999999999999999999999974 3 2 2457777668999999999998754
No 41
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.19 E-value=8.7e-05 Score=69.62 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=49.9
Q ss_pred eecCCC--chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 54 WCRGTL--REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 54 ~~~gG~--~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
++.+|. ...++++|.+.+++ |++|+.+++|++|..++ ++ +.|++. |..++||+||+|++++..
T Consensus 126 ~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~-~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 126 FPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDG--EG-WQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred eCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--Ce-EEEEeCCCCEEEcCEEEEcCCcccc
Confidence 444442 25688899988888 99999999999999876 55 567776 446899999999999864
No 42
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.16 E-value=0.00046 Score=64.60 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=47.4
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~ 120 (343)
..+++.|.+.+++.|++++.+++|++|..++ +++ .|+++++++.||.||+|++++..
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~-~v~~~~~~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTE--LLV-TVKTTKGSYQANKLVVTAGAWTS 201 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecC--CeE-EEEeCCCEEEeCEEEEecCcchH
Confidence 3578888888889999999999999998876 554 47777668999999999998753
No 43
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.10 E-value=1.2e-05 Score=74.38 Aligned_cols=107 Identities=21% Similarity=0.186 Sum_probs=69.8
Q ss_pred CccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEc
Q 019274 1 MIQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLD 80 (343)
Q Consensus 1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~ 80 (343)
|+++|+++++++.++.+.+..-|+-+. ++.+...+-.+. +.. ...--.+|| ...|++.|.+ +.|++| +
T Consensus 76 L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~~G~vSla----~a~--~gl~sV~GG-N~qI~~~ll~---~S~A~v-l 143 (368)
T PF07156_consen 76 LKENGISERFINELVQAATRVNYGQNV-NIHAFAGLVSLA----GAT--GGLWSVEGG-NWQIFEGLLE---ASGANV-L 143 (368)
T ss_pred HHHCCCCHHHHHHHHHhheEeeccccc-chhhhhhheeee----ecc--CCceEecCC-HHHHHHHHHH---HccCcE-e
Confidence 467899999999999999999988763 444433322221 111 111234688 6778887765 468999 9
Q ss_pred ceeeeEE-EecCCCCe-EEEEEEC---C-eEEecCEEEEeeChhhH
Q 019274 81 GRRVTDF-IYDEERCC-ISDVVCG---K-ETYSAGAVVLAVGISTL 120 (343)
Q Consensus 81 ~~~V~~I-~~~~~~g~-v~~V~~~---g-~~~~ad~VV~a~p~~~~ 120 (343)
+++|++| ...++ +. .+.|... + ..-.+|.||+|+|....
T Consensus 144 ~~~Vt~I~~~~~~-~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~ 188 (368)
T PF07156_consen 144 NTTVTSITRRSSD-GYSLYEVTYKSSSGTESDEYDIVVIATPLQQS 188 (368)
T ss_pred cceeEEEEeccCC-CceeEEEEEecCCCCccccCCEEEECCCcccc
Confidence 9999999 44443 32 2334433 2 23357999999999644
No 44
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.09 E-value=0.00051 Score=65.07 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=45.4
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE--CC----eEEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK----ETYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~--~g----~~~~ad~VV~a~p~~~~ 120 (343)
..++..|.+.+++.|++|+.+++|++|..++ +.+. +.+ .+ .+++||+||+|++++..
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEE-EEEEcCCCCccceEecCEEEECCCcChH
Confidence 4567888999999999999999999998766 5543 433 22 26899999999999874
No 45
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.99 E-value=6.9e-05 Score=70.66 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=75.9
Q ss_pred ccCCCCHHHHHHhHHHHHHhhhcCCcc-cccHHHHHHHHHHHH--HhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeE
Q 019274 2 IQFGCSERLYRNVIGPLVQVGLFAPAE-QCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF 78 (343)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sa~~~~~~l~~~~--~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i 78 (343)
+++++++...+.+...++ ++..+.. +.++...+..++.++ ++..+.+.+.||..|.++ |++++.+...=.||..
T Consensus 173 ~~f~L~~~~~~~i~haia--L~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~GE-LpQ~FcRl~AV~GG~Y 249 (438)
T PF00996_consen 173 KKFGLSENLIDFIGHAIA--LSLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFLYPLYGLGE-LPQAFCRLSAVYGGTY 249 (438)
T ss_dssp HHTTS-HHHHHHHHHHTS---SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEEEETT-TTH-HHHHHHHHHHHTT-EE
T ss_pred HhcCCCHHHHHHHHHhhh--hccCcccccccHHHHHHHHHHHHHHHhccCCCCEEEEccCCcc-HHHHHHHHhhhcCcEE
Confidence 567887777776644332 2222221 335667777777663 233445578899988765 9999999988889999
Q ss_pred EcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEe
Q 019274 79 LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA 114 (343)
Q Consensus 79 ~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a 114 (343)
.||++|.+|..+++ |++.+|..+|++++|+.||..
T Consensus 250 ~L~~~i~~i~~~~~-g~~~gV~s~ge~v~~k~vI~d 284 (438)
T PF00996_consen 250 MLNRPIDEIVVDED-GKVIGVKSEGEVVKAKKVIGD 284 (438)
T ss_dssp ESS--EEEEEEETT-TEEEEEEETTEEEEESEEEEE
T ss_pred EeCCccceeeeecC-CeEEEEecCCEEEEcCEEEEC
Confidence 99999999999665 888899988999999999963
No 46
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.95 E-value=0.0017 Score=60.57 Aligned_cols=57 Identities=25% Similarity=0.240 Sum_probs=46.5
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~ 120 (343)
..++..+.+.+.+.|++++++++|++|..++ +. +.|++++.+++||.||.|++++..
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~-~~v~~~~g~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADG--DG-VTVTTADGTYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeC--Ce-EEEEeCCCEEEeeEEEEecCcchh
Confidence 3466777777888899999999999999876 54 457777568999999999998754
No 47
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.95 E-value=0.0008 Score=60.12 Aligned_cols=63 Identities=22% Similarity=0.300 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhhh
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKN 126 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~~ 126 (343)
-++++...++++|+.++-+..|..+...++++..++|.+. |..+.|+.+|+|+++|..+ ||+.
T Consensus 155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k-lL~~ 218 (399)
T KOG2820|consen 155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK-LLPT 218 (399)
T ss_pred HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh-hcCc
Confidence 4577888899999999999999999876543555677776 6679999999999999886 6664
No 48
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.78 E-value=0.017 Score=56.61 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=49.3
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~~~~ 120 (343)
..++.++++.++++|++|+.+++|++|..++ +++++|++. | .+++|+.||.|++++.-
T Consensus 128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 128 FRLVAANVLDAQEHGARIFTYTKVTGLIREG--GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 4578889999999999999999999999877 777777752 3 36899999999999864
No 49
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.74 E-value=0.0047 Score=55.34 Aligned_cols=56 Identities=21% Similarity=0.219 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--CeEEecCEEEEeeChhhH
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~~~~ad~VV~a~p~~~~ 120 (343)
.+.+.|.+.+++.|++++++++|+++..++ +++. +.+. +.+++||.||.|.+....
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~-~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVV-VIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEE-EEEcCccEEEEeCEEEECCCcchH
Confidence 466788888888999999999999998877 4432 3333 468999999999998753
No 50
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.72 E-value=0.002 Score=65.05 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=49.9
Q ss_pred EeecCCC--chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC-eEEecCEEEEeeChhhH
Q 019274 53 VWCRGTL--REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTL 120 (343)
Q Consensus 53 ~~~~gG~--~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g-~~~~ad~VV~a~p~~~~ 120 (343)
.+|.+|. ...++++|.+.+++ |++|+.+++|++|..++ +++ .|.+++ ..++||.||+|++.+..
T Consensus 398 ~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~-~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 398 FYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERED--DGW-QLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred EeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEE-EEEECCCcEEECCEEEECCCCCcc
Confidence 3455552 24688999999888 99999999999998876 554 477764 45789999999999764
No 51
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.66 E-value=0.0066 Score=56.86 Aligned_cols=205 Identities=15% Similarity=0.081 Sum_probs=105.8
Q ss_pred hhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhhhcccCchhHHhhcc
Q 019274 62 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN 140 (343)
Q Consensus 62 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~ 140 (343)
.++++|++.+++.| ..+..+++|..+..++ +++.|.+.+.++.||+||+|++++.-. +..... ...
T Consensus 157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~---~~~~v~t~~g~i~a~~vv~a~G~~~~~-l~~~~~---------~~~ 223 (387)
T COG0665 157 LLTRALAAAAEELGVVIIEGGTPVTSLERDG---RVVGVETDGGTIEADKVVLAAGAWAGE-LAATLG---------ELP 223 (387)
T ss_pred HHHHHHHHHHHhcCCeEEEccceEEEEEecC---cEEEEEeCCccEEeCEEEEcCchHHHH-HHHhcC---------CCc
Confidence 58899999999999 5667799999998751 347788886669999999999998754 221110 000
Q ss_pred CcccceEEEEEEeccCCCCCCCcc--eeecCCCCccceEeeccccccccCCCCCeEE-EEEeeCC-CCCCCCCHHH-HHH
Q 019274 141 LASIDVVSVKLWFDKKVTVPNVSN--ACSGFGDSLAWTFFDLNKIYDEHKDDSATVI-QADFYHA-NELMPLKDDQ-VVA 215 (343)
Q Consensus 141 l~~~~~~~v~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i-~~~~~~~-~~~~~~~~~e-~~~ 215 (343)
+...++....+.++.......... ...... .. ..++- +. .++.++ ....... ..-.+...++ ...
T Consensus 224 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~y~~-----~~---~~g~~~~g~~~~~~~~~~~~~~~~~~~~~ 293 (387)
T COG0665 224 LPLRPVRGQALTTEPPEGLLADGLAPVVLVVD-DG-GGYIR-----PR---GDGRLRVGGTDEEGGDDPSDPEREDLVIA 293 (387)
T ss_pred CccccccceEEEecCCCccccccccceEEEec-CC-ceEEE-----Ec---CCCcEEEeecccccCCCCccccCcchhHH
Confidence 111111111121222111000000 000000 00 00110 10 122222 2211111 0111111222 577
Q ss_pred HHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHH
Q 019274 216 KAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANR 295 (343)
Q Consensus 216 ~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~ 295 (343)
.+++.+.+++|.+....+.. .|....+..+|+..+..-.. .+.+|+|++..+. ++| +.-+...|+.+|+.
T Consensus 294 ~l~~~~~~~~P~l~~~~~~~----~w~g~~~~t~pd~~P~iG~~-~~~~~l~~a~G~~--~~G---~~~~p~~g~~lA~l 363 (387)
T COG0665 294 ELLRVARALLPGLADAGIEA----AWAGLRPPTTPDGLPVIGRA-APLPNLYVATGHG--GHG---FTLAPALGRLLADL 363 (387)
T ss_pred HHHHHHHHhCccccccccce----eeeccccCCCCCCCceeCCC-CCCCCEEEEecCC--CcC---hhhccHHHHHHHHH
Confidence 89999999999987533322 25443332334443221111 2378999997763 343 34478899999999
Q ss_pred HHHH
Q 019274 296 VVDY 299 (343)
Q Consensus 296 il~~ 299 (343)
|+..
T Consensus 364 i~g~ 367 (387)
T COG0665 364 ILGG 367 (387)
T ss_pred HcCC
Confidence 9874
No 52
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.52 E-value=0.038 Score=54.49 Aligned_cols=58 Identities=22% Similarity=0.195 Sum_probs=48.8
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CC--eEEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g--~~~~ad~VV~a~p~~~~ 120 (343)
..++.++++.+.++|++|+.+++|++|..++ +++++|++ .+ .+++||.||.|++++.-
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREG--DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcC--CeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 4577788888899999999999999999887 77888875 23 47899999999999864
No 53
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.49 E-value=0.00034 Score=65.89 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=49.3
Q ss_pred eeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CCeEEecCEEEEeeChhh
Q 019274 51 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 119 (343)
Q Consensus 51 ~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g~~~~ad~VV~a~p~~~ 119 (343)
...||...-...+++.|.+.+++.|++|+++++|++|..++ +++..|.+ +++++.||+||+|++..+
T Consensus 99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE--DGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET--TEEEEEEETTTEEEEESEEEE----SS
T ss_pred CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC--CceeEeeccCcccccCCEEEEecCCCC
Confidence 35678765578899999999999999999999999999887 56788999 678999999999998643
No 54
>PRK10015 oxidoreductase; Provisional
Probab=97.39 E-value=0.044 Score=52.27 Aligned_cols=56 Identities=23% Similarity=0.439 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 120 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~ 120 (343)
+-+.|.+.+++.|++|+.+++|++|..++ +++.+|.+++.+++||.||.|.+....
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~~~i~A~~VI~AdG~~s~ 165 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGDDILEANVVILADGVNSM 165 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCCeEEECCEEEEccCcchh
Confidence 33457788888899999999999998776 677777777778999999999998653
No 55
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.31 E-value=0.061 Score=53.86 Aligned_cols=59 Identities=20% Similarity=0.100 Sum_probs=48.5
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecC-CCCeEEEEEE----CCe--EEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE-ERCCISDVVC----GKE--TYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~-~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~~ 120 (343)
..++.+|++.++++|++|+.+++|++|..++ + |++++|++ +++ ++.||.||.|++++.-
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~-g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDEST-GRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCC-CcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence 4688899999999999999999999998763 2 67777765 243 5799999999999863
No 56
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.30 E-value=0.08 Score=49.94 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 120 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~ 120 (343)
+-+-|++.+++.|++++.+++|+.+..+++ +.+.++..++.+++|+.||.|.++...
T Consensus 97 fd~~La~~A~~aGae~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 97 FDKWLAERAEEAGAELYPGTRVTGVIREDD-GVVVGVRAGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred hhHHHHHHHHHcCCEEEeceEEEEEEEeCC-cEEEEEEcCCEEEEcCEEEECCCcchH
Confidence 556688889999999999999999999884 544444444568999999999998764
No 57
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.25 E-value=0.064 Score=51.84 Aligned_cols=57 Identities=23% Similarity=0.173 Sum_probs=48.7
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeChhhHH
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~~~~~ 121 (343)
+|+-..+..+.++|++|+..++|+++..++ | |++|++. |+ +++|+.||-|++||.-.
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~--~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREG--G-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecC--C-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 466777778889999999999999999998 7 8999875 33 57999999999999864
No 58
>PRK06847 hypothetical protein; Provisional
Probab=97.19 E-value=0.052 Score=50.63 Aligned_cols=56 Identities=23% Similarity=0.176 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
.+.+.|.+.+++.|++|+++++|++|..++ +.+ .|.+. |+++++|.||.|.+....
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~-~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDD--DGV-TVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEE-EEEEcCCCEEEcCEEEECcCCCcc
Confidence 467888888888899999999999998776 444 45554 678999999999998764
No 59
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.16 E-value=0.0015 Score=61.35 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=53.8
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC---eEEecCEEEEeeChhhHHHhhhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK---ETYSAGAVVLAVGISTLQELIKN 126 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g---~~~~ad~VV~a~p~~~~~~Ll~~ 126 (343)
..|.++|.+.+++.|++++.+++|.++..++ +++++|.+++ ..++||+||+|++++-...|+..
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~ 329 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAE 329 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEecCCccceEECCEEEEccCCCcCHHHHhh
Confidence 4699999999999999999999999999888 7788888663 38999999999999855445443
No 60
>PRK06185 hypothetical protein; Provisional
Probab=97.12 E-value=0.047 Score=51.59 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC---C-eEEecCEEEEeeChhhH
Q 019274 62 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG---K-ETYSAGAVVLAVGISTL 120 (343)
Q Consensus 62 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g-~~~~ad~VV~a~p~~~~ 120 (343)
.+.+.|.+.+.+. |++++.+++|+++..++ +++++|++. | .+++||.||.|.+.+..
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDGPGEIRADLVVGADGRHSR 170 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCCCcEEEEeCEEEECCCCchH
Confidence 3667777777664 88999999999999877 666666542 4 37899999999998764
No 61
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.08 E-value=0.022 Score=55.57 Aligned_cols=96 Identities=13% Similarity=0.044 Sum_probs=65.8
Q ss_pred hhhcCCcccccHHHHHHHHHHHHHhcCCCceeEeecCCC--chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEE
Q 019274 21 VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTL--REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD 98 (343)
Q Consensus 21 ~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~gG~--~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~ 98 (343)
..++...+-+|.......+-...+..- -..+..|..|. ...++++|+..+++.|+.|..+++|++|+... +++++
T Consensus 146 ~a~g~e~~lLsPee~~~~~pLLn~d~v-~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~--~~~~g 222 (856)
T KOG2844|consen 146 KAHGVESELLSPEETQELFPLLNVDDV-YGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVET--DKFGG 222 (856)
T ss_pred hhccceeeecCHHHHHHhCcccchhHh-eeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeec--CCccc
Confidence 445555556665544433322110100 01122344332 25689999999999999999999999999987 45679
Q ss_pred EEECCeEEecCEEEEeeChhh
Q 019274 99 VVCGKETYSAGAVVLAVGIST 119 (343)
Q Consensus 99 V~~~g~~~~ad~VV~a~p~~~ 119 (343)
|++.-+.+++.+||-|++.|.
T Consensus 223 VeT~~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 223 VETPHGSIETECVVNAAGVWA 243 (856)
T ss_pred eeccCcceecceEEechhHHH
Confidence 999866899999999999987
No 62
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.03 E-value=0.002 Score=59.98 Aligned_cols=57 Identities=25% Similarity=0.203 Sum_probs=48.9
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~ 119 (343)
..+++.|.++|++.|++|+++|.|.+|+.++ +.+..|.+. |+++.+|+||+|++-..
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~--~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIED--NEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEecC--CceEEEEccCCcEEecCEEEEccCcch
Confidence 3477888899999999999999999999988 556677776 67999999999998643
No 63
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.95 E-value=0.089 Score=49.48 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
.|.+.|.+.+++.|++|+.+++|+++..++ +.+ .|+++ |++++||.||.|.+....
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v-~v~~~~g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDA--DRV-RLRLDDGRRLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeE-EEEECCCCEEEeCEEEEecCCCch
Confidence 477888888888999999999999998876 444 46665 668999999999998763
No 64
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.84 E-value=0.0047 Score=57.45 Aligned_cols=64 Identities=20% Similarity=0.310 Sum_probs=52.2
Q ss_pred eeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--CeEEecCEEEEeeChhh
Q 019274 51 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIST 119 (343)
Q Consensus 51 ~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~~~~ad~VV~a~p~~~ 119 (343)
...||...-+..++++|.+.+++.|++|+++++|++| ++ ++ +.|.+. ++.++||+||+|++...
T Consensus 76 grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~-~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 76 GRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GT-LRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--Cc-EEEEECCCceEEecCEEEEcCCCcc
Confidence 3568876667889999999999999999999999999 33 33 567764 35799999999999754
No 65
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.82 E-value=0.39 Score=46.96 Aligned_cols=57 Identities=23% Similarity=0.119 Sum_probs=45.3
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~~~~ 120 (343)
..++..+++.++++|++|+.+++|++|..++ +. ++|++. | .+++|+.||.|++++.-
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARREN--GL-WHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CE-EEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 3566788888889999999999999998776 54 455542 3 26899999999999764
No 66
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=96.82 E-value=0.0036 Score=57.50 Aligned_cols=64 Identities=16% Similarity=0.218 Sum_probs=53.0
Q ss_pred eeEeec-CCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC-eEEecCEEEEeeChh
Q 019274 51 DLVWCR-GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGIS 118 (343)
Q Consensus 51 ~~~~~~-gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g-~~~~ad~VV~a~p~~ 118 (343)
...||. .. ++.|+++|.+.+++.|++|+++++|.+|..++ .. ..+.+.+ ++++||.+|+|++..
T Consensus 101 Gr~Fp~sdk-A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~-f~l~t~~g~~i~~d~lilAtGG~ 166 (408)
T COG2081 101 GRMFPDSDK-ASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SG-FRLDTSSGETVKCDSLILATGGK 166 (408)
T ss_pred ceecCCccc-hHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ce-EEEEcCCCCEEEccEEEEecCCc
Confidence 345777 44 67899999999999999999999999999887 32 4577764 589999999999843
No 67
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.80 E-value=0.0051 Score=58.74 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=51.4
Q ss_pred eecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecC-CCCeEEEEEEC--CeEEecCEEEEeeChhh
Q 019274 54 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE-ERCCISDVVCG--KETYSAGAVVLAVGIST 119 (343)
Q Consensus 54 ~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~-~~g~v~~V~~~--g~~~~ad~VV~a~p~~~ 119 (343)
++.++ +..+++.|.+.+++.|++|+++++|++|..++ + ++|.+|... +.++.|+.||+|++...
T Consensus 117 ~~~~~-g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~-g~v~gv~~~~~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 117 FLRGG-GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFD-GAHDGPLTTVGTHRITTQALVLAAGGLG 183 (432)
T ss_pred eecCC-HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCC-CeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence 34444 45699999999999999999999999998762 3 778887764 34789999999999653
No 68
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=96.75 E-value=0.0047 Score=59.82 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=49.8
Q ss_pred hhhhHHHHHHHHH----cC--CeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHH
Q 019274 61 EKIFEPWMDSMRT----RG--CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 61 ~~l~~~l~~~l~~----~G--~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~ 121 (343)
..++++|.+.+++ .| ++|+++++|++|..++ +.++.|.+++++++||.||+|+++++..
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~--~~~~~V~T~~G~i~A~~VVvaAG~~S~~ 275 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN--DSLYKIHTNRGEIRARFVVVSACGYSLL 275 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC--CCeEEEEECCCEEEeCEEEECcChhHHH
Confidence 4588999999988 78 6789999999999876 4457788886689999999999998753
No 69
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.65 E-value=0.2 Score=47.25 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
.+.+.|.+.+++.|++|+.+++|++|..++ +.+ .|++. |++++||.||.|.+....
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v-~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRD--EGV-TVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEE-EEEECCCCEEEeCEEEEcCCCChH
Confidence 478888888888899999999999998776 444 46654 668999999999998654
No 70
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.56 E-value=0.2 Score=46.77 Aligned_cols=56 Identities=11% Similarity=0.152 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 62 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 62 ~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
.+.+.|.+.+.+ .|++++.+++|++|..++ +.+ .|.+. |++++||.||.|.+.+..
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~-~v~~~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYV-RVTLDNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeE-EEEECCCCEEEeeEEEEecCCChH
Confidence 477888888887 499999999999998776 444 46555 568999999999998763
No 71
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.52 E-value=0.0093 Score=57.56 Aligned_cols=58 Identities=26% Similarity=0.220 Sum_probs=49.0
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---C--eEEecCEEEEeeChhh
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIST 119 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g--~~~~ad~VV~a~p~~~ 119 (343)
+..+++.|.+.+++.|++|+++++|++|..++ ++|++|++. + ..+.|+.||+|++...
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 35689999999999999999999999999876 788888763 2 3679999999998654
No 72
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.50 E-value=0.72 Score=45.00 Aligned_cols=57 Identities=19% Similarity=0.058 Sum_probs=45.3
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---C--eEEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g--~~~~ad~VV~a~p~~~~ 120 (343)
..++..++..++++|++++.+++|++|..++ +. +.|++. | .+++|+.||.|++++.-
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREG--GL-WRVETRDADGETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcC--CE-EEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence 3566778888899999999999999998876 53 456553 2 25899999999999864
No 73
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.49 E-value=0.087 Score=46.46 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=45.2
Q ss_pred hhhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEEC---C--eEEecCEEEEeeChhhHHHhhhh
Q 019274 61 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGISTLQELIKN 126 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~---g--~~~~ad~VV~a~p~~~~~~Ll~~ 126 (343)
..+.+.|.+.+++.| +++.++ .|.++..+. +|+.+|..+ + ...+++++|++++||+-. |++.
T Consensus 147 ~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk--~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTsk-llp~ 214 (380)
T KOG2852|consen 147 YLFCHFILSEAEKRGGVKLVFG-KVKEVSDEK--HRINSVPKAEAEDTIIKADVHKIVVSAGPWTSK-LLPF 214 (380)
T ss_pred HHHHHHHHHHHHhhcCeEEEEe-eeEEeeccc--ccccccchhhhcCceEEeeeeEEEEecCCCchh-hccc
Confidence 458888998888887 788888 788887444 676666544 2 345788999999999875 4443
No 74
>PRK07045 putative monooxygenase; Reviewed
Probab=96.46 E-value=0.63 Score=43.63 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH
Q 019274 62 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 62 ~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~ 121 (343)
.|.+.|.+.+.. .|++++++++|++|..+++ +.++.|+.+ |+++++|.||.|-+..+..
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~g~~~~~~~vIgADG~~S~v 167 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTVTSVTLSDGERVAPTVLVGADGARSMI 167 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcEEEEEeCCCCEEECCEEEECCCCChHH
Confidence 356667777654 4789999999999998764 545567775 6789999999999998743
No 75
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.41 E-value=0.16 Score=46.53 Aligned_cols=62 Identities=26% Similarity=0.275 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-C--C--eEEecCEEEEeeChhhH-HHhhh
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGISTL-QELIK 125 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~--g--~~~~ad~VV~a~p~~~~-~~Ll~ 125 (343)
.|-+.|.+.+++.|++|+.+++|+.+..++ +.+..+.. . | .+++||.||-|-+..+. .+.+.
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~--~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDD--DGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEET--TEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccc--cccccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence 467788888889999999999999998877 44433322 2 3 26899999999999874 44443
No 76
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.40 E-value=0.24 Score=46.19 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 62 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 62 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
.+.+.|.+.+++.| ++|+.+++|++|..++ +.+ .|++. |+++++|.||.|.+....
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~-~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHS--DHV-ELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecC--Cee-EEEECCCCEEEeeEEEEeCCCCCH
Confidence 47788888888888 9999999999998876 544 46664 668999999999888764
No 77
>PRK07190 hypothetical protein; Provisional
Probab=96.39 E-value=1 Score=43.76 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CCeEEecCEEEEeeChhhHH
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g~~~~ad~VV~a~p~~~~~ 121 (343)
+-+.|.+.+++.|++|+.+++|++|..++ +.+. +.+ +|++++|+.||.|.+..+..
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~--~~v~-v~~~~g~~v~a~~vVgADG~~S~v 167 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQ--AGCL-TTLSNGERIQSRYVIGADGSRSFV 167 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeeE-EEECCCcEEEeCEEEECCCCCHHH
Confidence 44556667888899999999999999877 3443 344 36689999999999997753
No 78
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.39 E-value=0.27 Score=46.19 Aligned_cols=62 Identities=18% Similarity=0.159 Sum_probs=49.3
Q ss_pred hhhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEEC--CeEEecCEEEEeeChhhHH-Hhhh
Q 019274 61 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGISTLQ-ELIK 125 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~~~~ad~VV~a~p~~~~~-~Ll~ 125 (343)
..|.+.|.+.+.+.+ ++++.+++|+.+..++ +.|. +++. |++++||.||-|=+.++.. +.+.
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDG--DGVT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 357889999998877 7999999999999988 4555 5554 6789999999999987754 4444
No 79
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.38 E-value=0.37 Score=45.46 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH-HHhh
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL-QELI 124 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~-~~Ll 124 (343)
.+.+.|.+.+++.|++|+.+++|++|..++ +.+ .|++. |++++||.||.|.+.++. .+++
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v-~v~~~~g~~~~a~~vVgAdG~~S~vR~~l 174 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSG--DDW-LLTLADGRQLRAPLVVAADGANSAVRRLA 174 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeE-EEEECCCCEEEeCEEEEecCCCchhHHhc
Confidence 356788888888899999999999998776 444 46655 568999999999999774 3444
No 80
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.36 E-value=0.012 Score=55.55 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=48.9
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeE-EecCEEEEeeChhhHH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KET-YSAGAVVLAVGISTLQ 121 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~-~~ad~VV~a~p~~~~~ 121 (343)
..++.+|++.++++|++|++|++|+.|+..++ | ++.+.+. |++ ++|+.||.+.+.....
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d-g-~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSD-G-VFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCC-c-eEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 45889999999999999999999999999885 4 5555555 544 9999999999987653
No 81
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.35 E-value=0.0086 Score=50.57 Aligned_cols=57 Identities=25% Similarity=0.174 Sum_probs=43.1
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC-eEEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g-~~~~ad~VV~a~p~~~~ 120 (343)
+.+.+.|.+.+++.|.+|+++++|+++..++ ++ |.|++.. .+++||+||+|++....
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~--~~-w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRDG--DG-WTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEET--TT-EEEEETTS-EEEEEEEEE---SSCS
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEec--cE-EEEEEEecceeeeeeEEEeeeccCC
Confidence 3478899999999999999999999999987 44 7888885 58999999999996433
No 82
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.27 E-value=0.012 Score=55.78 Aligned_cols=59 Identities=27% Similarity=0.309 Sum_probs=47.7
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeChhhH
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTL 120 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~~~~ 120 (343)
...+++.|.+.++++|++|+++++|++|..++ ++|++|... ++ ++.|+.||+|++....
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 35689999999999999999999999999987 899998775 33 5789999999988664
No 83
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.19 E-value=0.016 Score=54.60 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~ 119 (343)
..++++|.+.+++.|++|+++++|.+|..++ +.+ .|.+++++++||.||+|++.+.
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~-~V~~~~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHA--NGV-VVRTTQGEYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecC--CeE-EEEECCCEEEeCEEEECCCcch
Confidence 5688999999999999999999999998776 544 5777766899999999999875
No 84
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.16 E-value=0.017 Score=57.38 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=49.0
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEec-CEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~a-d~VV~a~p~~~~ 120 (343)
..|+++|.+.+++.|++|+++++|++|..++ |+|++|+.. ++ +++| +.||+|++.+.-
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~--g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRED--GRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 4588999999999999999999999998876 888888663 33 5788 999999998763
No 85
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.06 E-value=0.31 Score=45.69 Aligned_cols=56 Identities=18% Similarity=-0.038 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
.+.+.|.+.+.+.++..+.+++|+++..++ +.+ .|++. +++++||.||.|.+....
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~-~v~~~~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPRE--DEV-TVTLADGTTLSARLVVGADGRNSP 168 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeE-EEEECCCCEEEEeEEEEecCCCch
Confidence 467888888887776569999999998876 444 46665 568999999999998764
No 86
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.03 E-value=0.026 Score=53.34 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=51.6
Q ss_pred EeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274 53 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 119 (343)
Q Consensus 53 ~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~ 119 (343)
.||.......+.+.|.+.+++.|++|+++++|++|..++ +. +.|+++++++.+|.||+|++...
T Consensus 97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~-~~v~~~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NG-FGVETSGGEYEADKVILATGGLS 160 (400)
T ss_pred eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--Ce-EEEEECCcEEEcCEEEECCCCcc
Confidence 355444456799999999999999999999999997765 43 56777777899999999999743
No 87
>PRK07588 hypothetical protein; Provisional
Probab=96.01 E-value=0.73 Score=43.25 Aligned_cols=55 Identities=9% Similarity=0.008 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~ 121 (343)
|.+.|.+.+. .|++|+++++|++|+.++ +.| .|++. |+++++|.||-|-+..+..
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~--~~v-~v~~~~g~~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHR--DGV-RVTFERGTPRDFDLVIGADGLHSHV 160 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECC--CeE-EEEECCCCEEEeCEEEECCCCCccc
Confidence 4555555554 378999999999998876 444 36654 6678999999999987743
No 88
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.97 E-value=0.023 Score=56.12 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEec-CEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~a-d~VV~a~p~~~~ 120 (343)
..|+.+|.+.+++.|++|+++++|++|..++ |+|++|... ++ .+.| +.||+|++...-
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~ 279 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDDG--GRVTGAVVDHRGREVTVTARRGVVLAAGGFDH 279 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEecC--CEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence 5699999999999999999999999998765 899998653 43 3566 589999988664
No 89
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=95.96 E-value=1.4 Score=41.17 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=43.5
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~ 119 (343)
..+.+.|.+.+.+.|++++ +++|..+..++ +..+.|+++ |++++||.||.|.+...
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~--~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADG--VALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecC--CceeEEEeCCCCEEEeCEEEECCCCch
Confidence 4577888888888899886 66888888764 233567776 45899999999999976
No 90
>PRK07121 hypothetical protein; Validated
Probab=95.93 E-value=0.022 Score=55.32 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=49.7
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEec-CEEEEeeChhhH
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGISTL 120 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~a-d~VV~a~p~~~~ 120 (343)
+..+++.|.+.+++.|++|+++++|++|..+++ |+|++|+.. ++ .+.| +.||+|++....
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCC-CCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 356899999999999999999999999998754 788888763 32 5788 999999997653
No 91
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.92 E-value=0.031 Score=55.32 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=48.9
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~ 119 (343)
+..|+++|.+.+++.|++|+.+++|++|..++ |+|.||.. +|+ .+.|+.||+|++...
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~--g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMED--GECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC--CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 35689999999999999999999999999875 89998875 243 578999999998864
No 92
>PRK08244 hypothetical protein; Provisional
Probab=95.91 E-value=0.96 Score=43.98 Aligned_cols=55 Identities=24% Similarity=0.238 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---CC-eEEecCEEEEeeChhhH
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGISTL 120 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~g-~~~~ad~VV~a~p~~~~ 120 (343)
+-+.|.+.+++.|++|+.+++|+++..++ +.+. |++ +| .+++||.||-|-+..+.
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDG--DGVE-VVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcC--CeEE-EEEEeCCccEEEEeCEEEECCCCChH
Confidence 55667777788899999999999998877 4443 333 24 47899999999998764
No 93
>PLN02697 lycopene epsilon cyclase
Probab=95.90 E-value=1.9 Score=42.23 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CCeEEecCEEEEeeChhh
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 119 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g~~~~ad~VV~a~p~~~ 119 (343)
.|.+.|.+.+.+.|+++ ++++|++|..++ +.+..+.+ +|.+++|+.||.|.+++.
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~--~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEAS--DGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcC--CcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 46678888888889998 788999998776 33333444 467899999999999987
No 94
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=95.89 E-value=0.026 Score=55.99 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=48.5
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEec-CEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~a-d~VV~a~p~~~~ 120 (343)
..|+++|.+.+++.|++|+++++|++|..++ ++|.+|... ++ ++.| +.||+|++...-
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDH--GRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 4689999999999999999999999998775 889888774 33 4676 689999998654
No 95
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.053 Score=49.84 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=62.3
Q ss_pred ccHHHHHHHHHHHH--HhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEe
Q 019274 30 CSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYS 107 (343)
Q Consensus 30 ~sa~~~~~~l~~~~--~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ 107 (343)
.++..++..+..|+ ++..+.+...||..|+++ |++.+++...-.||+..+|.++.+|....+ |++.+|..++++..
T Consensus 200 ~p~~~~~~ri~~Y~~S~~~yg~~~ylyP~yGlgE-L~QgFaRlsAvyGgTYMLn~pi~ei~~~~~-gk~igvk~~~~v~~ 277 (440)
T KOG1439|consen 200 QPAKETLERILLYVRSFARYGKSPYLYPLYGLGE-LPQGFARLSAVYGGTYMLNKPIDEINETKN-GKVIGVKSGGEVAK 277 (440)
T ss_pred CccHHHHHHHHHHHHHHhhcCCCcceecccCcch-hhHHHHHHhhccCceeecCCceeeeeccCC-ccEEEEecCCceee
Confidence 34445555554442 223334457789999875 999999988778999999999999998544 88888888888888
Q ss_pred cCEEEEee
Q 019274 108 AGAVVLAV 115 (343)
Q Consensus 108 ad~VV~a~ 115 (343)
+..||+..
T Consensus 278 ~k~vi~dp 285 (440)
T KOG1439|consen 278 CKKVICDP 285 (440)
T ss_pred cceEEecC
Confidence 88777654
No 96
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.84 E-value=0.036 Score=52.92 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 119 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~ 119 (343)
+-+.|.+.+++.|++|+.+++|++|..++ +++.+++.++++++||.||.|.+...
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 44567888888999999999999998776 67666766677899999999998865
No 97
>PRK06834 hypothetical protein; Provisional
Probab=95.84 E-value=1.1 Score=43.67 Aligned_cols=56 Identities=27% Similarity=0.261 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
.+-+.|.+.+++.|++|+.+++|++|..++ +.+ .|++. +++++||.||.|.+..+.
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v-~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDD--TGV-DVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeE-EEEECCCCEEEeCEEEEecCCCCC
Confidence 356677788888899999999999999877 444 35554 568999999999998774
No 98
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=95.74 E-value=0.0038 Score=58.19 Aligned_cols=108 Identities=14% Similarity=0.041 Sum_probs=73.3
Q ss_pred CCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcC--CCceeEeecCCCchhhhHHHHHHHHHcCCeEEcc
Q 019274 4 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ--KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDG 81 (343)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~--~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~ 81 (343)
+.+|+.+++.|+.|+....|+.+|+++++.++..+=........ ...-.++|++| .+.+++.|++ ..+.+|++|
T Consensus 140 ~~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~G-yt~~~~~ml~---~~~i~v~l~ 215 (377)
T TIGR00031 140 QLLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGG-YTKLFEKMLD---HPLIDVKLN 215 (377)
T ss_pred HHHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCccccccccccccc-HHHHHHHHHh---cCCCEEEeC
Confidence 45789999999999999999999999998876422111100000 01234689999 6778887764 347789999
Q ss_pred eeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHH
Q 019274 82 RRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 82 ~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~ 121 (343)
+.+..+...+ ++ +...++.+. +.||.|.|++.+-
T Consensus 216 ~~~~~~~~~~--~~---~~~~~~~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 216 CHINLLKDKD--SQ---LHFANKAIR-KPVIYTGLIDQLF 249 (377)
T ss_pred Cccceeeccc--cc---eeecccccc-CcEEEecCchHHH
Confidence 9888887544 33 333332333 8899998887764
No 99
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.73 E-value=1 Score=42.55 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH-HHhh
Q 019274 63 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL-QELI 124 (343)
Q Consensus 63 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~-~~Ll 124 (343)
|-+.|.+.+.+. |++|+.+++|++|..++ +.+ .|++. |++++||.||.|-+..+. .+.+
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~~-~v~~~~g~~~~a~lvIgADG~~S~vR~~~ 174 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGE--SEA-WLTLDNGQALTAKLVVGADGANSWLRRQM 174 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeC--CeE-EEEECCCCEEEeCEEEEeCCCCChhHHHc
Confidence 455666666654 78999999999998776 443 46665 678999999999998764 3443
No 100
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.70 E-value=0.029 Score=53.67 Aligned_cols=59 Identities=27% Similarity=0.295 Sum_probs=48.5
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---Ce--EEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~--~~~ad~VV~a~p~~~~ 120 (343)
..+++.|.+.+++.|++|+++++|++|..+++ |+|++|++. ++ .+.++.||+|++....
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ-GTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCC-CcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 35889999999999999999999999998654 778887663 33 4689999999997654
No 101
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=95.68 E-value=0.98 Score=42.24 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 62 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 62 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
.+.+.|.+.+++.| ++++ ++.|++|..++ +.+ .|++. |.+++||.||.|.+.+..
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~-~v~~~~g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDP--DAA-TLTLADGQVLRADLVVGADGAHSW 168 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeE-EEEECCCCEEEeeEEEEeCCCCch
Confidence 47788888888888 8889 99999998766 443 46665 558999999999998754
No 102
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=95.65 E-value=0.044 Score=48.42 Aligned_cols=59 Identities=25% Similarity=0.242 Sum_probs=47.8
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC------------CeEEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~------------g~~~~ad~VV~a~p~~~~ 120 (343)
..+.+.|.+.+++.|++|+.++.|+++..+++ ++|.+|.+. ..+++|+.||.|++.+..
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILRED-PRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCC-CcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 45788899999999999999999999987663 478777653 136899999999997653
No 103
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.65 E-value=0.033 Score=55.29 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=48.5
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEecC-EEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~ad-~VV~a~p~~~~ 120 (343)
..++..|.+.+++.|++|+++++|++|..+++ |+|++|... ++ .+.|+ .||+|++...-
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~-g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPD-GAVVGAVVEREGRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCC-CcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence 45888888889999999999999999998754 889988764 33 46887 59999998653
No 104
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.59 E-value=0.99 Score=42.67 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=43.2
Q ss_pred hhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC--C--eEEecCEEEEeeChhhHH
Q 019274 61 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 61 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g--~~~~ad~VV~a~p~~~~~ 121 (343)
..+.+.|.+.+.+. |++++++++|++|..++ +.+ .|++. + .+++||.||.|-+.....
T Consensus 121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~-~v~~~~~~~~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 121 QVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAA-TVTLEIEGKQQTLQSKLVVAADGARSPI 183 (415)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--Cee-EEEEccCCcceEEeeeEEEEeCCCCchh
Confidence 34667777777665 78999999999998776 443 35543 3 368999999999987753
No 105
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.58 E-value=0.039 Score=54.48 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=48.8
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEecC-EEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~ad-~VV~a~p~~~~ 120 (343)
..|++.|.+.+++.|++|+++++|++|..++ |+|++|... ++ .+.|+ .||+|++...-
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVED--GRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 5689999999999999999999999999876 899998773 43 46785 79999987654
No 106
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.56 E-value=1.3 Score=41.58 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=41.8
Q ss_pred hhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 63 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 63 l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
+-+.|.+.+.+ .|++|+.+++|+++..++ +.+ .|++. +.++++|.||.|.+.+..
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~-~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQ--GSV-RVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeE-EEEECCCCEEEeCEEEEecCCChh
Confidence 44566666655 478999999999998766 444 46665 567899999999998763
No 107
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=95.55 E-value=2.3 Score=41.83 Aligned_cols=58 Identities=19% Similarity=0.108 Sum_probs=42.2
Q ss_pred hHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEE---CC--eEEecCEEEEeeChhhHH-Hhh
Q 019274 64 FEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGISTLQ-ELI 124 (343)
Q Consensus 64 ~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~---~g--~~~~ad~VV~a~p~~~~~-~Ll 124 (343)
-+.|.+.+.+. |++|+.+++|++|..++ +.|+ |++ +| .+++||.||-|-+..+.. +.+
T Consensus 116 e~~L~~~~~~~~gv~v~~g~~v~~i~~~~--~~v~-v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~l 180 (538)
T PRK06183 116 EAVLRAGLARFPHVRVRFGHEVTALTQDD--DGVT-VTLTDADGQRETVRARYVVGCDGANSFVRRTL 180 (538)
T ss_pred HHHHHHHHHhCCCcEEEcCCEEEEEEEcC--CeEE-EEEEcCCCCEEEEEEEEEEecCCCchhHHHHc
Confidence 34555666554 89999999999999877 4443 444 34 378999999999998754 444
No 108
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.50 E-value=0.054 Score=53.67 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=49.0
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~ 119 (343)
+..|+++|.+.+++.|++|+.++.+++|..+++ |+|.||.. +|+ .+.|+.||+|++...
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCC-CeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 356899999999889999999999999998644 89999875 243 568999999999865
No 109
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=95.49 E-value=0.045 Score=53.05 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=45.9
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---C-C--eEEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-K--ETYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~-g--~~~~ad~VV~a~p~~~~ 120 (343)
..++++|.+.+++.|++|+++++|++|..+++ +. +.|.+ + + .+++||+||+|++.+..
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~-v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GS-WTVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-Ce-EEEEEeeccCCceEEEECCEEEECCCcchH
Confidence 56899999999999999999999999988653 43 33432 2 3 26899999999998874
No 110
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.47 E-value=0.047 Score=53.29 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=47.5
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--C---eEEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--K---ETYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g---~~~~ad~VV~a~p~~~ 119 (343)
..+++.|.+.+++.|++|+++++|++|..++ |+|++|.+. + .++.||.||+|++...
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 3588999999999999999999999998765 788888663 2 2588999999998654
No 111
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=95.43 E-value=0.094 Score=49.50 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=49.4
Q ss_pred hhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeChhhHH
Q 019274 61 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 61 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~~~~~ 121 (343)
..|.+.|.+.+++. |.+++++++|++|.+.+| |+ |.|.+. + .+++|+.|++..+..++.
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD-GR-WEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCC-CC-EEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 35889999999888 999999999999999886 64 666552 2 478999999999999876
No 112
>PRK09126 hypothetical protein; Provisional
Probab=95.43 E-value=0.81 Score=42.90 Aligned_cols=55 Identities=24% Similarity=0.212 Sum_probs=41.7
Q ss_pred hhHHHHHHHH-HcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 63 IFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 63 l~~~l~~~l~-~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
+.+.|.+.+. ..|++|+.+++|+++..++ +.+ .|.+. |++++||.||.|.+....
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~-~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGA-QVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeE-EEEEcCCCEEEeCEEEEeCCCCch
Confidence 5556666654 4689999999999998766 443 46654 668999999999998654
No 113
>PLN02463 lycopene beta cyclase
Probab=95.41 E-value=2.7 Score=40.39 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 119 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~ 119 (343)
.+-+.|.+.+.+.|++++ +++|++|..++ ++ +.|+++ |.+++||.||.|.+...
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~-~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEE--SK-SLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcC--Ce-EEEEECCCCEEEcCEEEECcCCCc
Confidence 455777788888899986 67999998876 44 457776 56899999999999864
No 114
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.37 E-value=0.06 Score=51.45 Aligned_cols=58 Identities=12% Similarity=0.261 Sum_probs=46.1
Q ss_pred chhhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEE--CCe--EEecCEEEEeeChhh
Q 019274 60 REKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 60 ~~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~--~g~--~~~ad~VV~a~p~~~ 119 (343)
+..+++.|.+.+++ .|++|+++++|++|..++ ++|.+|.. +++ .+.|+.||+|++...
T Consensus 127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~--~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 127 GKKVEKILLKKVKKRKNITIIENCYLVDIIEND--NTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC--CEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 34688999988875 499999999999998776 78888653 343 579999999999743
No 115
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.35 E-value=1.3 Score=41.50 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 62 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 62 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
.+-+.|.+.+++. |++++.+++|+++..++ +. +.|.++ +++++||.||.|.+..+.
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~-~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDD--DG-WELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--Ce-EEEEECCCCEEEeCEEEEeCCCCch
Confidence 3556777777766 89999999999998776 44 346665 568999999999999774
No 116
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.34 E-value=0.071 Score=53.13 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=48.5
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~ 119 (343)
..|+++|.+.+++.|++|+.++.|++|..+++ |+|.||.. +|+ .+.|+.||+|++...
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDG-GVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 46889999999889999999999999988754 78888875 243 678999999998764
No 117
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=95.32 E-value=0.065 Score=50.87 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-C--eEEecCEEEEeeChh
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGIS 118 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g--~~~~ad~VV~a~p~~ 118 (343)
.+.+.|.+.+++.|++|+++++|.++..++ +++..+... + ..++||.||+|++..
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 588999999999999999999999999876 666665543 3 358999999999974
No 118
>PRK08401 L-aspartate oxidase; Provisional
Probab=95.30 E-value=0.059 Score=52.01 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=49.3
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 120 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~ 120 (343)
+..+.+.|.+.+++.|++++.+ .|+.|..++ |+|.+|.++++.+.|+.||+|++....
T Consensus 119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 119 GKHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFLDGELLKFDATVIATGGFSG 176 (466)
T ss_pred hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEECCEEEEeCeEEECCCcCcC
Confidence 3568999999999999999876 799988765 788888888778999999999998764
No 119
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.24 E-value=0.064 Score=53.01 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=48.1
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEecC-EEEEeeChhhH
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGISTL 120 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~ad-~VV~a~p~~~~ 120 (343)
+..+...|.+.+++.|++|+++++|++|..++ ++|++|+.. ++ .+.|+ .||+|++....
T Consensus 207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~--g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVED--GRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC--CEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 45688899999999999999999999999876 788888763 43 57886 69999987654
No 120
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.15 E-value=0.081 Score=52.60 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=48.6
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~ 119 (343)
+..|+..|.+.+++.|++|++++.|++|..+++ |+|.||.. +|+ .+.|+.||+|++...
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 356889999988888999999999999998643 88999875 243 568999999998865
No 121
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=95.02 E-value=0.099 Score=51.83 Aligned_cols=57 Identities=26% Similarity=0.324 Sum_probs=47.8
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~ 119 (343)
..+.+.|.+.+++.|++|+.++.|++|..++ |+|.+|.. +++ .+.|+.||+|++...
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 4588899998888899999999999998876 88888764 243 579999999999764
No 122
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.96 E-value=0.11 Score=51.70 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=48.3
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~ 119 (343)
+..+++.|.+.+++.|++|+.++.|++|..++ |+|.++.. +++ .+.|+.||+|++...
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 35689999999999999999999999998876 88887763 243 579999999999864
No 123
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=94.95 E-value=0.071 Score=52.90 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=47.7
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEecC-EEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~ad-~VV~a~p~~~ 119 (343)
..|+++|.+.+++.|++|+++++|++|..++ ++|++|++. ++ .+.++ .||+|++...
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~--g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG--GRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 4588999999999999999999999999886 888888763 22 46786 7999999765
No 124
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.84 E-value=0.1 Score=52.49 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeChhh
Q 019274 65 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 65 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~~~ 119 (343)
+.|.+.+++.|++|++++.|++|..++ |+|.||... |. .+.|+.||+|++...
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 667777888899999999999998876 888888752 33 578999999998754
No 125
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=94.80 E-value=0.096 Score=50.89 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=45.5
Q ss_pred hhhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEE---C-Ce--EEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~---~-g~--~~~ad~VV~a~p~~~~ 120 (343)
..+.++|.+.+++.| ++|+++++|++|..+++ ++ +.|.+ . |+ +++|++||+|++.+..
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~-~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-GS-WTVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-CC-EEEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 358899999999887 69999999999998653 54 33443 2 32 6899999999999874
No 126
>PRK12839 hypothetical protein; Provisional
Probab=94.72 E-value=0.1 Score=51.72 Aligned_cols=59 Identities=19% Similarity=0.153 Sum_probs=47.3
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---Ce-EE-ecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE-TY-SAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~-~~-~ad~VV~a~p~~~~ 120 (343)
..|+..|.+.+++.|++|+++++|++|..+++ |+|++|... +. ++ .++.||+|++...-
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~-g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKN-GRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 45889999999999999999999999987644 889998753 33 34 45899999987653
No 127
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=94.62 E-value=0.13 Score=51.40 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=44.6
Q ss_pred chhhhHHHHHHHHHc----CCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeChh
Q 019274 60 REKIFEPWMDSMRTR----GCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIS 118 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~----G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~~ 118 (343)
+..++.+|.+.+++. |++|+++++|++|..+++ |+|+||... ++ .+.|+.||+|++..
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~-grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDG-NRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 345777777666543 799999999999988653 788888752 32 57899999999875
No 128
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=94.62 E-value=0.16 Score=44.71 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=46.5
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-------C-----eEEecCEEEEeeChhh
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIST 119 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-------g-----~~~~ad~VV~a~p~~~ 119 (343)
.+.+.|.+.+.+.|++|+.++.|+++..+++..+|.+|.++ + .+++|+.||.|++...
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 47888999999999999999999999887621168888763 1 3689999999998654
No 129
>PRK08013 oxidoreductase; Provisional
Probab=94.61 E-value=4.1 Score=38.38 Aligned_cols=59 Identities=14% Similarity=0.054 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH-Hhh
Q 019274 63 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELI 124 (343)
Q Consensus 63 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~-~Ll 124 (343)
|-+.|.+.+++. |++|+.+++|++|+.++ +.+ .|++. |++++||.||-|-+.++.. +.+
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v-~v~~~~g~~i~a~lvVgADG~~S~vR~~~ 174 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGE--NEA-FLTLKDGSMLTARLVVGADGANSWLRNKA 174 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeE-EEEEcCCCEEEeeEEEEeCCCCcHHHHHc
Confidence 556777777765 78999999999998776 333 35554 6789999999999988753 443
No 130
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=94.59 E-value=0.09 Score=51.10 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC--C--eEEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g--~~~~ad~VV~a~p~~~~ 120 (343)
..+.+.|.+.+++ .|++|+.++.|++|..++ ++|.+|.+. + ..+.|+.||+|++....
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 4688999999987 699999999999998776 778877664 2 36799999999998753
No 131
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=94.57 E-value=0.16 Score=50.86 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=47.4
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~ 119 (343)
..|..+|.+.+++.|++|+.+++|++|..+++ |+|.||.. +|+ .+.|+.||+|++...
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDED-GECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCC-CEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 46889999999899999999999999988433 88888864 243 568999999997753
No 132
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=94.54 E-value=0.11 Score=46.75 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=43.3
Q ss_pred HHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---Ce----EEecCEEEEeeChhhHHHhhhh
Q 019274 67 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE----TYSAGAVVLAVGISTLQELIKN 126 (343)
Q Consensus 67 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~----~~~ad~VV~a~p~~~~~~Ll~~ 126 (343)
|...++..+.+|++++.|++|..+++++++++|++. +. ++.++.||+|+++-.+.+||-.
T Consensus 199 L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~ 265 (296)
T PF00732_consen 199 LPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLR 265 (296)
T ss_dssp HHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHH
T ss_pred cchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhcc
Confidence 444444448999999999999876322788888874 32 4578999999999888776543
No 133
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=94.53 E-value=0.14 Score=47.73 Aligned_cols=54 Identities=28% Similarity=0.321 Sum_probs=43.1
Q ss_pred hhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeCh
Q 019274 61 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 117 (343)
Q Consensus 61 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~ 117 (343)
..+.+.+.+.++++ +.+| ....|++|..++ ++|++|++. |+.+.+|.||+|+++
T Consensus 95 ~~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~--~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 95 DKYSRAMREKLESHPNLTI-IQGEVTDLIVEN--GKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHHHTSTTEEE-EES-EEEEEECT--TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHHHhcCCCeEE-EEcccceEEecC--CeEEEEEeCCCCEEecCEEEEeccc
Confidence 34667777888874 4566 477999999998 899999997 789999999999998
No 134
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.52 E-value=0.12 Score=51.28 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=48.2
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~~~ 119 (343)
..++++|.+.+++.|++|+.++.+++|..++ |+|+||... ++ .+.|+.||+|++...
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDN--KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC--CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 4588999998888899999999999999876 899998752 32 568999999999765
No 135
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=94.50 E-value=0.16 Score=50.93 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~ 119 (343)
..|+++|.+.+++.|++|+.++.+.+|..+++ |+|.+|.. +|+ .+.|+.||+|++...
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSD-GACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCC-CEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 45889999988888999999999999988743 78888865 243 578999999999864
No 136
>PRK06996 hypothetical protein; Provisional
Probab=94.49 E-value=3.6 Score=38.69 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---C-eEEecCEEEEeeCh
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K-ETYSAGAVVLAVGI 117 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g-~~~~ad~VV~a~p~ 117 (343)
.|-+.|.+.+++.|++++.+++|+++..+++ .| .+... | ++++||.||-|-+.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~--~v-~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDAD--GV-TLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCC--eE-EEEECCCCcceEEeeeEEEECCCC
Confidence 4778888889999999999999999987663 33 35543 2 47999999999774
No 137
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=94.48 E-value=0.13 Score=50.79 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=45.0
Q ss_pred hhhhHHHHHHHHH---c-CCeEEcceeeeEEEecCCCCeEEEEEEC------------------C-eEEecCEEEEeeCh
Q 019274 61 EKIFEPWMDSMRT---R-GCEFLDGRRVTDFIYDEERCCISDVVCG------------------K-ETYSAGAVVLAVGI 117 (343)
Q Consensus 61 ~~l~~~l~~~l~~---~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~------------------g-~~~~ad~VV~a~p~ 117 (343)
..++++|.+.+++ . |++|++++++++|..++ |+|++|+.. + ..+.|+.||+|++.
T Consensus 148 ~~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~--g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGG 225 (549)
T PRK12834 148 PGVVEPFERRVREAAARGLVRFRFRHRVDELVVTD--GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGG 225 (549)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC--CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCC
Confidence 3578888777652 3 58999999999999875 899999741 1 25789999999987
Q ss_pred hhH
Q 019274 118 STL 120 (343)
Q Consensus 118 ~~~ 120 (343)
..-
T Consensus 226 f~~ 228 (549)
T PRK12834 226 IGG 228 (549)
T ss_pred ccc
Confidence 653
No 138
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=94.45 E-value=0.16 Score=51.19 Aligned_cols=58 Identities=19% Similarity=0.148 Sum_probs=47.5
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~ 119 (343)
...|...|.+.+++.|++|+.+++|++|..++ |+|.||.. +|+ .+.|+.||+|++...
T Consensus 157 G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 157 GHTMLYAVDNEAIKLGVPVHDRKEAIALIHDG--KRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 34577888888889999999999999999876 88888765 243 468999999999754
No 139
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.44 E-value=0.18 Score=50.24 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=47.8
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-C---Ce--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~---g~--~~~ad~VV~a~p~~~ 119 (343)
..|++.|.+.+.+.|++|+.++.|++|..+++ |+|.+|.. + ++ .+.|+.||+|++...
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDAD-GDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCC-CeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 45889999988889999999999999998644 78888865 2 43 568999999998765
No 140
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=94.40 E-value=4.5 Score=37.97 Aligned_cols=60 Identities=12% Similarity=0.006 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEe-cCCCCeEEEEEE--CCe--EEecCEEEEeeChhhHH-Hhh
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIY-DEERCCISDVVC--GKE--TYSAGAVVLAVGISTLQ-ELI 124 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~-~~~~g~v~~V~~--~g~--~~~ad~VV~a~p~~~~~-~Ll 124 (343)
.+.+.|.+.+.+.|++++++++|+++.. ++ .. ..|+. +|+ +++||.||-|=+..+.. +.+
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~--~~-~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~ 169 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDS--DR-PYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASI 169 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCC--Cc-eEEEEEcCCeEEEEEeCEEEECCCCCCchhhhc
Confidence 3567777777788999999999999976 33 22 23444 353 68999999999987753 444
No 141
>PRK06126 hypothetical protein; Provisional
Probab=94.35 E-value=5.8 Score=39.09 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEE---C-Ce--EEecCEEEEeeChhhH
Q 019274 63 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGISTL 120 (343)
Q Consensus 63 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~---~-g~--~~~ad~VV~a~p~~~~ 120 (343)
|-+.|.+.+++. |++|+++++|++|..++ +.|. +++ . |+ ++++|.||.|.+..+.
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DGVT-ATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECC--CeEE-EEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 445666666654 78999999999999876 4444 332 2 43 6899999999999774
No 142
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=94.32 E-value=0.1 Score=48.48 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=42.2
Q ss_pred hhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~ 120 (343)
..++.+|.+.+.+. |++|+.+++|++|. . + .|+++++.++||+||+|++++..
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~--~--~---~v~t~~g~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVE--T--G---TVRTSRGDVHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEe--c--C---eEEeCCCcEEeCEEEECCCCChh
Confidence 34778888887775 99999999999995 2 3 36666556789999999999764
No 143
>PRK07512 L-aspartate oxidase; Provisional
Probab=94.30 E-value=0.094 Score=51.28 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=47.6
Q ss_pred chhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEecCEEEEeeChhh
Q 019274 60 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~ad~VV~a~p~~~ 119 (343)
+..++++|.+.+++. |++|+.++.|++|..++ |+|++|.+. ++ .+.|+.||+|++...
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD--GAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecC--CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 356899999988775 89999999999998776 888888763 33 579999999999854
No 144
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.23 E-value=0.18 Score=48.32 Aligned_cols=63 Identities=25% Similarity=0.371 Sum_probs=48.5
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhh
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK 125 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~ 125 (343)
...+.+.+.+.+++.|++|+++++|++|.. + +++..+.++++++++|.||++++...-..++.
T Consensus 190 ~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~-~--~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~ 252 (444)
T PRK09564 190 DKEITDVMEEELRENGVELHLNEFVKSLIG-E--DKVEGVVTDKGEYEADVVIVATGVKPNTEFLE 252 (444)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCEEEEEec-C--CcEEEEEeCCCEEEcCEEEECcCCCcCHHHHH
Confidence 355778888899999999999999999964 3 44566777777899999999998754333443
No 145
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=94.16 E-value=0.14 Score=49.59 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=44.4
Q ss_pred hhhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEE---EC-Ce--EEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVV---CG-KE--TYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~---~~-g~--~~~ad~VV~a~p~~~~ 120 (343)
..|.++|.+.+.+ .|++|+++++|+.|..+++ +. |.|. ++ ++ +++||.||+|++.+..
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~-w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GG-WEVTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CC-EEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence 3578889888864 4899999999999988732 44 3444 33 32 6899999999999884
No 146
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.15 E-value=0.16 Score=50.14 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=47.0
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~ 119 (343)
..+++.|.+.+++.|++|++++.|++|..+++ ++|++|.. +++ .+.|+.||+|++...
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~-~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDEN-REVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC-cEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 45889999988889999999999999988763 45887753 243 578999999999754
No 147
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=93.94 E-value=0.19 Score=49.22 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=45.4
Q ss_pred hhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEecC-EEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~ad-~VV~a~p~~~ 119 (343)
..++..+.+.+.+. |++|+++++|++|..++ |+|.+|+.. ++ ++.|+ .||+|++...
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~--g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVED--GRVVGAVVERGGERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC--CEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence 35788888877664 99999999999998876 889888763 33 57886 7999998864
No 148
>PRK08275 putative oxidoreductase; Provisional
Probab=93.91 E-value=0.22 Score=49.21 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=47.8
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~ 119 (343)
..+.+.|.+.+++.|++|+.++.|++|..+++ |+|.+|.. +|+ .+.|+.||+|++...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDAD-GRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCC-CeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 45889999999999999999999999988733 78888864 243 478999999999864
No 149
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=93.80 E-value=0.15 Score=47.83 Aligned_cols=54 Identities=28% Similarity=0.301 Sum_probs=44.0
Q ss_pred CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-Ce-EEecCEEEEeeChhh
Q 019274 59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE-TYSAGAVVLAVGIST 119 (343)
Q Consensus 59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~-~~~ad~VV~a~p~~~ 119 (343)
+...+.+...+.|+++|++|+++++|++|..+ +|+++ |+ ++.++.+|.|++...
T Consensus 207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTPD-------GVTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCceEEECCC-------cEEEccCCeeEecCEEEEcCCCcC
Confidence 35678999999999999999999999999743 24454 44 599999999998743
No 150
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.79 E-value=0.24 Score=49.29 Aligned_cols=59 Identities=29% Similarity=0.364 Sum_probs=47.5
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCC--CCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVC----GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~--~g~v~~V~~----~g~--~~~ad~VV~a~p~~~ 119 (343)
..+++.|.+.+++.|++|+.++.|++|..+++ +|+|.||.. +++ .+.|+.||+|++...
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 56889999999999999999999999987641 157888865 243 578999999999865
No 151
>PRK06116 glutathione reductase; Validated
Probab=93.73 E-value=0.26 Score=47.30 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=45.2
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 118 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~ 118 (343)
...+.+.+.+.+++.|++|+++++|.+|..+++ +.+ .|.+. |+++++|.||++++..
T Consensus 207 ~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-g~~-~v~~~~g~~i~~D~Vv~a~G~~ 264 (450)
T PRK06116 207 DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD-GSL-TLTLEDGETLTVDCLIWAIGRE 264 (450)
T ss_pred CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC-ceE-EEEEcCCcEEEeCEEEEeeCCC
Confidence 345778888999999999999999999987653 433 35554 6789999999999763
No 152
>PRK07804 L-aspartate oxidase; Provisional
Probab=93.68 E-value=0.2 Score=49.40 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-------C--eEEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K--ETYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-------g--~~~~ad~VV~a~p~~~ 119 (343)
..+.+.|.+.+++.|++|+.++.|.+|..+++ |+|.+|.+. + ..+.|+.||+|++...
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGT-GAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCC-CeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 45889999999999999999999999988754 688887652 2 3578999999999854
No 153
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=93.62 E-value=8.1 Score=38.14 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEE-EEEEC-Ce-EEecCEEEEeeChhhH-HHhhh
Q 019274 63 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCIS-DVVCG-KE-TYSAGAVVLAVGISTL-QELIK 125 (343)
Q Consensus 63 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~-~V~~~-g~-~~~ad~VV~a~p~~~~-~~Ll~ 125 (343)
+-+.|.+.+++. |++|+++++|+++..++ +.+. .++.. +. +++||.||.|.+.... .+.+.
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg 192 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGVTLTVETPDGPYTLEADWVIACDGARSPLREMLG 192 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence 345566666665 68999999999999876 4332 22222 33 6899999999998774 34443
No 154
>PRK07395 L-aspartate oxidase; Provisional
Probab=93.42 E-value=0.2 Score=49.39 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=46.8
Q ss_pred chhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEecCEEEEeeChh
Q 019274 60 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIS 118 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~ad~VV~a~p~~ 118 (343)
+..++++|.+.+++. |++|++++.|++|..++++|+|.||... +. .+.|+.||+|++..
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 356899999988754 8999999999999886321788888653 43 46899999999985
No 155
>PRK08071 L-aspartate oxidase; Provisional
Probab=93.23 E-value=0.18 Score=49.27 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=45.2
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---Ce--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~--~~~ad~VV~a~p~~~ 119 (343)
..+.++|.+.++ .|++|+.++.|++|..++ |+|.+|... ++ .+.|+.||+|++...
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIEN--GRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecC--CEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 347888888776 599999999999998776 788888763 32 578999999998855
No 156
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=93.09 E-value=0.35 Score=48.37 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=45.9
Q ss_pred hhhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEE---C-Ce--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~---~-g~--~~~ad~VV~a~p~~~ 119 (343)
..+.+.|.+.+++.| ++|+.++.|.+|..++ ++|++|.. . ++ .+.|+.||+|++...
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVDD--NRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC--CEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 357888888887776 9999999999998776 78888753 2 33 679999999999765
No 157
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=93.07 E-value=0.18 Score=47.47 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=53.5
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIK 125 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~ 125 (343)
..+-+.+.++++++|+++++++.|.++.-..+ |++.-|.+. +.++.||-||+.+++....+++.
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~-Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSD-GEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeecccCCC-CcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 45778889999999999999999999987766 888888876 67999999999999865544443
No 158
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.92 E-value=0.36 Score=34.02 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=34.5
Q ss_pred CCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC
Q 019274 58 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG 102 (343)
Q Consensus 58 G~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~ 102 (343)
.+...+.+.+.+.+++.|++|++++.|++|..+++ + +. |++.
T Consensus 37 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-~~-V~~~ 78 (80)
T PF00070_consen 37 GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD-G-VE-VTLE 78 (80)
T ss_dssp TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-S-EE-EEEE
T ss_pred hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-E-EE-EEEe
Confidence 34566888899999999999999999999998885 5 65 6653
No 159
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.82 E-value=0.43 Score=45.63 Aligned_cols=56 Identities=25% Similarity=0.232 Sum_probs=44.0
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~ 119 (343)
..+.+.+.+.+++.|++++++++|++|..++ +++ .+..+++++++|.||++++...
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~--~~v-~v~~~g~~i~~D~viva~G~~p 253 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDG--DQV-LVVTEDETYRFDALLYATGRKP 253 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecC--CEE-EEEECCeEEEcCEEEEeeCCCC
Confidence 4466777788899999999999999998755 443 3555677899999999987643
No 160
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.71 E-value=0.4 Score=45.90 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=44.4
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~ 119 (343)
..+.+.+.+.+++.|+++++++.|++|..++ +.+ .+.++++++.+|.||++++...
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~v-~v~~~~g~i~~D~vl~a~G~~p 254 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHE--NQV-QVHSEHAQLAVDALLIASGRQP 254 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE-EEEEcCCeEEeCEEEEeecCCc
Confidence 4577888889999999999999999998765 543 3555555689999999987643
No 161
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.63 E-value=0.52 Score=45.42 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=44.0
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CC---eEEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g---~~~~ad~VV~a~p~~~ 119 (343)
..+.+.+.+.+++.|++|+++++|++|..++ +.+ .+.+ ++ +++++|.||++++...
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v-~v~~~~gg~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQTD--DGV-TVTLEDGGKEETLEADYVLVAVGRRP 272 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEE-EEEEEeCCeeEEEEeCEEEEeeCCcc
Confidence 4577888888999999999999999998765 443 3444 34 5789999999998643
No 162
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=92.62 E-value=0.49 Score=45.93 Aligned_cols=57 Identities=12% Similarity=0.256 Sum_probs=45.6
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 118 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~ 118 (343)
...+.+.+.+.+++.|++|++++.|++|..+++ +. ..|++. ++++++|.||++++..
T Consensus 230 d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 230 DSTLRKELTKQLRANGINIMTNENPAKVTLNAD-GS-KHVTFESGKTLDVDVVMMAIGRV 287 (486)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-ce-EEEEEcCCCEEEcCEEEEeeCCC
Confidence 456788999999999999999999999987653 43 345554 6689999999999854
No 163
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.60 E-value=0.52 Score=44.10 Aligned_cols=56 Identities=11% Similarity=0.153 Sum_probs=44.3
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~ 119 (343)
..+.+.+.+.+++.|++++++++|++|..++ +. +.|.+. |+++++|.||++++...
T Consensus 183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~-~~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 183 PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SG-IRATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHHHHHHHHhCCCEEEECCeEEEEEccC--CE-EEEEEcCCcEEECCEEEECcCCCc
Confidence 3456778888999999999999999998765 43 346654 67899999999998744
No 164
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.58 E-value=0.51 Score=46.91 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=46.1
Q ss_pred hhhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~ 119 (343)
..++++|.+.+.+ .|++|+.++.|++|..++ |+|.+|.. +++ .+.|+.||+|++...
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN--GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 4588889888766 589999999999998876 88888754 243 578999999999864
No 165
>PLN02985 squalene monooxygenase
Probab=92.56 E-value=11 Score=36.88 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEE---CCe--EEecCEEEEeeChhhH
Q 019274 62 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGISTL 120 (343)
Q Consensus 62 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~---~g~--~~~ad~VV~a~p~~~~ 120 (343)
.|.+.|.+.+.+. +++++.+ .|.++..++ +.+.+|++ +|+ +++||.||.|-+..+.
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~--~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~ 209 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEK--GVIKGVTYKNSAGEETTALAPLTVVCDGCYSN 209 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEcC--CEEEEEEEEcCCCCEEEEECCEEEECCCCchH
Confidence 4677888887766 5788765 577776655 66667765 343 4579999999998774
No 166
>PLN02507 glutathione reductase
Probab=92.50 E-value=0.54 Score=45.86 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=45.0
Q ss_pred CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274 59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 118 (343)
Q Consensus 59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~ 118 (343)
+...+.+.+.+.+++.|++|++++.|++|..++ +.+ .|.++ |+++++|.||++++..
T Consensus 242 ~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~--~~~-~v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 242 FDDEMRAVVARNLEGRGINLHPRTNLTQLTKTE--GGI-KVITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CeE-EEEECCCcEEEcCEEEEeecCC
Confidence 345577888888999999999999999998655 443 35554 5689999999999864
No 167
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=92.44 E-value=0.49 Score=45.58 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=45.4
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 119 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~ 119 (343)
...+.+.+.+.+++.|++++++++|++|..++ +.+ .+++. |+++++|.||++++...
T Consensus 215 d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~--~~~-~v~~~~g~~i~~D~vi~a~G~~p 272 (461)
T PRK05249 215 DDEISDALSYHLRDSGVTIRHNEEVEKVEGGD--DGV-IVHLKSGKKIKADCLLYANGRTG 272 (461)
T ss_pred CHHHHHHHHHHHHHcCCEEEECCEEEEEEEeC--CeE-EEEECCCCEEEeCEEEEeecCCc
Confidence 34577889999999999999999999998765 433 35554 66899999999998654
No 168
>PRK14694 putative mercuric reductase; Provisional
Probab=92.35 E-value=0.47 Score=45.86 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=45.2
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~ 119 (343)
..+.+.+.+.+++.|+++++++.|++|..++ +. ..+.++++++++|.||++++...
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~--~~-~~v~~~~~~i~~D~vi~a~G~~p 273 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNG--RE-FILETNAGTLRAEQLLVATGRTP 273 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CE-EEEEECCCEEEeCEEEEccCCCC
Confidence 4578889999999999999999999998665 43 34556666799999999997644
No 169
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.34 E-value=0.46 Score=47.72 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=45.9
Q ss_pred hhhhHHHHHHHHHc--------C-----CeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChh
Q 019274 61 EKIFEPWMDSMRTR--------G-----CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS 118 (343)
Q Consensus 61 ~~l~~~l~~~l~~~--------G-----~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~ 118 (343)
..++++|.+.+++. | ++|+.++.|.+|..++ |+|.+|.. +++ .+.|+.||+|++..
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~ 212 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG--GRIAGAFGYWRESGRFVLFEAPAVVLATGGI 212 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC--CEEEEEEEEECCCCeEEEEEcCeEEECCCcc
Confidence 45888999888777 7 8999999999999876 88888754 243 57999999999974
No 170
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=92.19 E-value=0.64 Score=44.76 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=44.3
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-C--eEEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g--~~~~ad~VV~a~p~~~ 119 (343)
..+.+.+.+.+++.|+++++++.|++|..++ +++. +.+. | .++++|.||++++...
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKND--DQVV-YENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEE-EEEeCCcEEEEEeCEEEEecCCcc
Confidence 4577788888999999999999999998766 5543 5543 4 4789999999998643
No 171
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=91.84 E-value=0.7 Score=44.32 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=44.0
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CCeEEecCEEEEeeChh
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 118 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g~~~~ad~VV~a~p~~ 118 (343)
...+.+.+.+.+++.|+++++++.|++|..+++ + + .|.+ +++++++|.||++++..
T Consensus 206 d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~-~-~v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 206 DDDMRALLARNMEGRGIRIHPQTSLTSITKTDD-G-L-KVTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-e-E-EEEEcCCcEeecCEEEEeeCCC
Confidence 345677888889999999999999999986552 3 2 3555 36689999999999864
No 172
>PRK06184 hypothetical protein; Provisional
Probab=91.78 E-value=0.64 Score=45.35 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---C-CeEEecCEEEEeeChhhH
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~-g~~~~ad~VV~a~p~~~~ 120 (343)
+-+.|.+.+++.|++|+++++|++|..++ +.|+ +++ + +++++||.||-|.+..+.
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~--~~v~-v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDA--DGVT-ARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcC--CcEE-EEEEeCCCeEEEEeCEEEECCCCchH
Confidence 45677788888899999999999998876 3443 333 3 468999999999999875
No 173
>PRK14727 putative mercuric reductase; Provisional
Probab=91.77 E-value=0.59 Score=45.29 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=44.8
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~ 119 (343)
..+.+.+.+.+++.|++|+++++|++|..++ +.+ .+.++++++.+|.||++++...
T Consensus 228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~--~~~-~v~~~~g~i~aD~VlvA~G~~p 283 (479)
T PRK14727 228 PLLGETLTACFEKEGIEVLNNTQASLVEHDD--NGF-VLTTGHGELRAEKLLISTGRHA 283 (479)
T ss_pred HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC--CEE-EEEEcCCeEEeCEEEEccCCCC
Confidence 4467788888999999999999999998765 433 3555555789999999998754
No 174
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=91.75 E-value=0.29 Score=48.15 Aligned_cols=50 Identities=18% Similarity=0.164 Sum_probs=40.2
Q ss_pred HcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce---EEecCEEEEeeChhhHHHhh
Q 019274 73 TRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE---TYSAGAVVLAVGISTLQELI 124 (343)
Q Consensus 73 ~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~---~~~ad~VV~a~p~~~~~~Ll 124 (343)
+.+.+|++++.|++|..++ +++++|++. ++ .+.++.||+|+++-.+.+||
T Consensus 206 r~nl~i~~~~~V~rI~~~~--~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL 260 (532)
T TIGR01810 206 RPNLEVQTRAFVTKINFEG--NRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL 260 (532)
T ss_pred CCCeEEEeCCEEEEEEecC--CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence 4579999999999999986 888999873 32 34789999999986666654
No 175
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=91.68 E-value=0.6 Score=48.52 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=46.5
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhh
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELI 124 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll 124 (343)
...+.+.+.++++|++|++++.|++|..+++ +.+..|..+ |+++.+|.||++++...-..|+
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~-~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~ 250 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGV-EARKTMRFADGSELEVDFIVFSTGIRPQDKLA 250 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecCC-CceEEEEECCCCEEEcCEEEECCCcccCchHH
Confidence 3556788889999999999999999976542 334456664 6789999999999865433343
No 176
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=91.60 E-value=0.7 Score=37.34 Aligned_cols=40 Identities=33% Similarity=0.339 Sum_probs=30.1
Q ss_pred CCeEE-cceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeCh
Q 019274 75 GCEFL-DGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 117 (343)
Q Consensus 75 G~~i~-~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~ 117 (343)
|++|. ...+|+.|...++ + +.|.+. |..+.||+||+|++.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~-~--~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDD-G--YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCC-c--EEEEECCCCEEEeCEEEECCCC
Confidence 55554 6789999998874 4 345555 678899999999974
No 177
>PRK06753 hypothetical protein; Provisional
Probab=91.45 E-value=12 Score=34.73 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~ 121 (343)
|.+.|.+.++ ..+|+++++|++|..++ +.+ .|++. |+++++|.||-|-+..+..
T Consensus 100 l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v-~v~~~~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 100 LIDIIKSYVK--EDAIFTGKEVTKIENET--DKV-TIHFADGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred HHHHHHHhCC--CceEEECCEEEEEEecC--CcE-EEEECCCCEEecCEEEECCCcchHH
Confidence 4455554443 46899999999998766 544 46554 6788999999999987643
No 178
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=91.44 E-value=0.69 Score=44.67 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=43.6
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 118 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~ 118 (343)
..+.+.+.+.++++|++|+++++|++|..++ +.+ .|.+. |+++++|.||++++..
T Consensus 218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~-~v~~~~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 218 ADAAEVLEEVFARRGMTVLKRSRAESVERTG--DGV-VVTLTDGRTVEGSHALMAVGSV 273 (466)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeC--CEE-EEEECCCcEEEecEEEEeecCC
Confidence 4467778888999999999999999998655 444 35544 6789999999998764
No 179
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=91.38 E-value=0.94 Score=43.55 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=45.2
Q ss_pred CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-C-eEEecCEEEEeeChhh
Q 019274 59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K-ETYSAGAVVLAVGIST 119 (343)
Q Consensus 59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g-~~~~ad~VV~a~p~~~ 119 (343)
+...+.+.+.+.+++.|+++++++.|++|..+++ +.+ .|.++ + +.+++|.||++++...
T Consensus 205 ~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~-~~~-~v~~~~g~~~i~~D~vi~a~G~~p 265 (450)
T TIGR01421 205 FDSMISETITEEYEKEGINVHKLSKPVKVEKTVE-GKL-VIHFEDGKSIDDVDELIWAIGRKP 265 (450)
T ss_pred cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCC-ceE-EEEECCCcEEEEcCEEEEeeCCCc
Confidence 3445778888889999999999999999986542 433 45554 5 5689999999998643
No 180
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=91.30 E-value=1 Score=44.87 Aligned_cols=58 Identities=26% Similarity=0.206 Sum_probs=46.8
Q ss_pred chhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEE----CC--eEEecCEEEEeeChhh
Q 019274 60 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 119 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g--~~~~ad~VV~a~p~~~ 119 (343)
+..|.++|.+.+.+. |++++.++.|++|..++ |+|.||.. +| ..+.|+.||+|++...
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD--GRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC--CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 356889999887664 78999999999999876 88888764 24 3578999999998755
No 181
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=91.27 E-value=0.58 Score=50.52 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHc---CCeEEcceeeeEEEecCC---CC----eEEEEEEC------Ce--EEecCEEEEeeChhhH
Q 019274 62 KIFEPWMDSMRTR---GCEFLDGRRVTDFIYDEE---RC----CISDVVCG------KE--TYSAGAVVLAVGISTL 120 (343)
Q Consensus 62 ~l~~~l~~~l~~~---G~~i~~~~~V~~I~~~~~---~g----~v~~V~~~------g~--~~~ad~VV~a~p~~~~ 120 (343)
.+++.|.+.+++. |++|+++++|++|..+++ +| +|+||... |+ .+.|+.||+|++...-
T Consensus 545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~ 621 (1167)
T PTZ00306 545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSN 621 (1167)
T ss_pred HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCccc
Confidence 4778888887754 899999999999998641 02 78888753 32 5789999999998653
No 182
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=91.18 E-value=13 Score=37.56 Aligned_cols=53 Identities=21% Similarity=0.155 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHcCC-eEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH
Q 019274 63 IFEPWMDSMRTRGC-EFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 63 l~~~l~~~l~~~G~-~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~ 121 (343)
|.+.|.+. .+. .++.+++|++|..++ ++|+ |++. |.++++|.||.|-+.+...
T Consensus 196 L~~~L~~a---lg~~~i~~g~~V~~I~~~~--d~Vt-V~~~dG~ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 196 LQQILARA---VGEDVIRNESNVVDFEDSG--DKVT-VVLENGQRYEGDLLVGADGIWSKV 250 (668)
T ss_pred HHHHHHhh---CCCCEEEcCCEEEEEEEeC--CEEE-EEECCCCEEEcCEEEECCCCCcHH
Confidence 44455443 344 478999999998876 5554 6554 6688999999999998753
No 183
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=91.17 E-value=0.86 Score=42.96 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhh
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELI 124 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll 124 (343)
.+.+.+.+.+++.|++|+++++|++|.. + +.+ .|.+. |+++.+|.||++++...-..|+
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~--~~~-~v~l~~g~~i~aD~Vv~a~G~~pn~~l~ 246 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD-G--EKV-ELTLQSGETLQADVVIYGIGISANDQLA 246 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc-C--CEE-EEEECCCCEEECCEEEECCCCChhhHHH
Confidence 3556677888899999999999999975 3 333 45554 6789999999999874433343
No 184
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=91.10 E-value=0.66 Score=44.74 Aligned_cols=57 Identities=18% Similarity=-0.066 Sum_probs=44.9
Q ss_pred hhhhHHHHHHHHHcCCe--EEcceeeeEEEecCCCCeEEEEEEC--C-e--EEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCE--FLDGRRVTDFIYDEERCCISDVVCG--K-E--TYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~--i~~~~~V~~I~~~~~~g~v~~V~~~--g-~--~~~ad~VV~a~p~~~~ 120 (343)
..+.+.|.+++++.|.+ |+++++|++|...+ ++ |.|++. + . +..+|+||+|++....
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~-w~V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GK-WRVQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--Ce-EEEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 45889999999999987 99999999998876 54 566653 2 1 4579999999997543
No 185
>PRK08163 salicylate hydroxylase; Provisional
Probab=91.04 E-value=0.78 Score=43.05 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH
Q 019274 63 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 63 l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~ 121 (343)
|.+.|.+.+.+.| ++++.+++|+++..++ +.+. |.+. |++++||.||.|.+.+...
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVT-VFDQQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceE-EEEcCCCEEecCEEEECCCcChHH
Confidence 5677888777665 8999999999998766 4443 5554 6689999999999988754
No 186
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.93 E-value=0.95 Score=43.70 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=42.7
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE---CC--eEEecCEEEEeeChh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS 118 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~g--~~~~ad~VV~a~p~~ 118 (343)
..+.+.+.+.++++|++|+++++|++|..++ +.+ .+++ +| .++++|.||++++..
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNG--SKV-TVTVSKKDGKAQELEADKVLQAIGFA 272 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CeE-EEEEEecCCCeEEEEeCEEEECcCcc
Confidence 4477888999999999999999999998654 433 2333 34 378999999999863
No 187
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=90.88 E-value=0.64 Score=42.60 Aligned_cols=84 Identities=14% Similarity=0.146 Sum_probs=59.5
Q ss_pred ccccHHHHHHHHHHHH--HhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeE
Q 019274 28 EQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKET 105 (343)
Q Consensus 28 ~~~sa~~~~~~l~~~~--~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~ 105 (343)
-+.++..++..+..|+ ++..+.+...||+-|+++ |++.+++...-.||+..+|+++.+|.... . |.+|..+..+
T Consensus 195 l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~YGl~E-l~QGFaRssav~GgtymLn~~i~ein~tk--~-v~~v~~~~~~ 270 (434)
T COG5044 195 LDIPAREALERILRYMRSFGDYGKSPYLYPRYGLGE-LSQGFARSSAVYGGTYMLNQAIDEINETK--D-VETVDKGSLT 270 (434)
T ss_pred ccCCchHHHHHHHHHHHhhcccCCCcceeeccCchh-hhHHHHHhhhccCceeecCcchhhhcccc--c-eeeeecCcce
Confidence 4555666666555553 123344567789988665 99999999878899999999999998755 2 3345444567
Q ss_pred EecCEEEEee
Q 019274 106 YSAGAVVLAV 115 (343)
Q Consensus 106 ~~ad~VV~a~ 115 (343)
..|..||+.-
T Consensus 271 ~ka~KiI~~~ 280 (434)
T COG5044 271 QKAGKIISSP 280 (434)
T ss_pred eecCcccCCc
Confidence 8888888654
No 188
>PRK13748 putative mercuric reductase; Provisional
Probab=90.85 E-value=0.79 Score=45.38 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=44.8
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~ 119 (343)
..+.+.+.+.+++.|++|++++.|++|..++ +.+ .+.++++++++|.||++++...
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~--~~~-~v~~~~~~i~~D~vi~a~G~~p 365 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHVD--GEF-VLTTGHGELRADKLLVATGRAP 365 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEE-EEEecCCeEEeCEEEEccCCCc
Confidence 4577888889999999999999999998765 543 3555555799999999998643
No 189
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=90.73 E-value=0.91 Score=45.02 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274 63 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 119 (343)
Q Consensus 63 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~ 119 (343)
+...|.+.+++. |+++ +.+.|++|..++ ++|.+|.+. |..+.|+.||.|++...
T Consensus 102 y~kaL~e~L~~~~nV~I-~q~~V~~Li~e~--grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 102 YRAAMREILENQPNLDL-FQGEVEDLIVEN--GRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHcCCCcEE-EEeEEEEEEecC--CEEEEEEECCCCEEECCEEEEeeCcch
Confidence 556777777766 6777 467899998887 788899887 66899999999999643
No 190
>PLN02815 L-aspartate oxidase
Probab=90.70 E-value=0.75 Score=45.81 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=45.2
Q ss_pred hhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCC---eEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERC---CISDVVC----GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g---~v~~V~~----~g~--~~~ad~VV~a~p~~~ 119 (343)
..+.++|.+.+++. |++|+.++.+++|..+++ | +|.||.. +|. .+.|+.||+|++...
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~-g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQD-GGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecC-CCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 45888998888765 899999999999998643 4 3778865 243 568999999999754
No 191
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.62 E-value=1.1 Score=44.57 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=45.7
Q ss_pred chhhhHHHHHHHHHcC----CeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeChhh
Q 019274 60 REKIFEPWMDSMRTRG----CEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G----~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~~~ 119 (343)
+..|.+.|.+.+++.+ ++|+.++.++++..+++ |+|.||... ++ .+.|+.||+|++...
T Consensus 132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDE-GVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCC-CEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 3458888888776654 67999999999998644 889988752 33 468999999998765
No 192
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=90.61 E-value=0.95 Score=43.57 Aligned_cols=57 Identities=28% Similarity=0.296 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
.+-+.|.+.+++.|++++.++ |.++..+++ |.|+.|+++ |++++||.||=|++....
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~-g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDED-GRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TT-SEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCC-CCEEEEEECCCCEEEEeEEEECCCccch
Confidence 477788888899999999885 788877765 888899986 678999999999998664
No 193
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=90.51 E-value=1.2 Score=44.42 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=45.6
Q ss_pred hhhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~ 119 (343)
..|.++|.+.+.+. +++++.++.|++|..++ |+|.||.. +++ .+.|+.||+|++...
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC--CEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 45888888877665 78999999999999876 88887754 242 678999999998755
No 194
>PRK06370 mercuric reductase; Validated
Probab=90.32 E-value=1.1 Score=43.24 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=42.2
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--CeEEecCEEEEeeChh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIS 118 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~~~~ad~VV~a~p~~ 118 (343)
..+.+.+.+.+++.|++|+++++|.+|..+++ +....+... +.++++|.||++++..
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~-~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRVERDGD-GIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-EEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 34677888889999999999999999987652 321222222 3578999999999864
No 195
>PRK09897 hypothetical protein; Provisional
Probab=90.29 E-value=1 Score=44.23 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHcC--CeEEcceeeeEEEecCCCCeEEEEEEC--CeEEecCEEEEeeCh
Q 019274 63 IFEPWMDSMRTRG--CEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGI 117 (343)
Q Consensus 63 l~~~l~~~l~~~G--~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~~~~ad~VV~a~p~ 117 (343)
..+.+.+.+++.| ++|+.+++|++|..++ +. +.|.++ +..+.||.||+|++.
T Consensus 109 ~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g-~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 109 QFLRLVDQARQQKFAVAVYESCQVTDLQITN--AG-VMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CE-EEEEECCCCeEEEcCEEEECCCC
Confidence 4444555566666 6888999999998876 44 346664 367899999999986
No 196
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=90.26 E-value=1.1 Score=40.06 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=43.6
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 118 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~ 118 (343)
..+.+.+.+.+++.|+++++ +.|++|..++ +. +.|.+. +.++++|+||+|++..
T Consensus 57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~--~~-~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 57 PELMEKMKEQAVKFGAEIIY-EEVIKVDLSD--RP-FKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHHHHHHcCCeEEE-EEEEEEEecC--Ce-eEEEeCCCCEEEeCEEEECCCCC
Confidence 34778888888999999999 8999998765 43 456665 5689999999999974
No 197
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=90.17 E-value=1.2 Score=42.93 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=43.0
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC--eEEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g--~~~~ad~VV~a~p~~~ 119 (343)
..+.+.+.+.+++.|++|++++.|++|..++ +.+ .+..++ .++++|.||++++...
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~--~~v-~~~~~g~~~~i~~D~vivA~G~~p 268 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSYK--KQA-LFEYEGSIQEVNAEFVLVSVGRKP 268 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEcC--CEE-EEEECCceEEEEeCEEEEecCCcc
Confidence 4477888888999999999999999997654 433 344444 3689999999998643
No 198
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=90.13 E-value=1.2 Score=43.16 Aligned_cols=55 Identities=11% Similarity=0.227 Sum_probs=42.8
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-C--C--eEEecCEEEEeeChh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIS 118 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~--g--~~~~ad~VV~a~p~~ 118 (343)
..+.+.+.+.+++.|++|+++++|++|..++ +.+ .+.. + | +++++|.||++++..
T Consensus 224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG--KGV-SVAYTDADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC--CEE-EEEEEeCCCceeEEEcCEEEEccCCc
Confidence 4577888888999999999999999998765 444 3443 2 3 468999999999864
No 199
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=90.01 E-value=1 Score=44.05 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 118 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~ 118 (343)
..+.+.+.+.+++.|++++++++|++|..++ +. +.|.+. +..+++|.+|+|++..
T Consensus 267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~--~~-~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 267 SQLAANLEEHIKQYPIDLMENQRAKKIETED--GL-IVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHHHhCCeEEcCCEEEEEEecC--Ce-EEEEECCCCEEEeCEEEECCCCC
Confidence 3477888899999999999999999998765 43 456665 5689999999999985
No 200
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=89.78 E-value=0.86 Score=44.74 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCC-CeEEEEEE----CCe--EEecCEEEEeeChhhHHHhh
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGISTLQELI 124 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~-g~v~~V~~----~g~--~~~ad~VV~a~p~~~~~~Ll 124 (343)
|..++.+.++....+|++++.|++|..+.++ ++|.+|++ +++ +++|+.||+|+++-.+.+||
T Consensus 216 ~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL 284 (544)
T TIGR02462 216 FDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL 284 (544)
T ss_pred hhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence 3344433333333899999999999987542 36777744 233 57999999999987777654
No 201
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=89.77 E-value=1.4 Score=42.51 Aligned_cols=55 Identities=13% Similarity=0.148 Sum_probs=42.3
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----CeEEecCEEEEeeChh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KETYSAGAVVLAVGIS 118 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~~~~ad~VV~a~p~~ 118 (343)
..+.+.+.+.+++.|++++++++|++|..++ +. ..+.+. ++++++|.||++++..
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~-~~v~~~~~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRG--GG-KIITVEKPGGQGEVEADELLVATGRR 265 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC--CE-EEEEEEeCCCceEEEeCEEEEeECCC
Confidence 4467788888999999999999999998765 33 234432 2579999999999853
No 202
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=89.76 E-value=1.2 Score=43.70 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=45.6
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 118 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~ 118 (343)
..+.+.+.+.+++.|.+++++++|++|..++ +. +.|.+. +.++++|.||+|++..
T Consensus 266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~-~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 266 PKLAAALEEHVKEYDVDIMNLQRASKLEPAA--GL-IEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--Ce-EEEEECCCCEEEcCEEEECCCCC
Confidence 3578899999999999999999999998865 33 456665 5689999999999984
No 203
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=89.72 E-value=0.72 Score=41.56 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHcC------CeEEcceeeeEEEecCCCCeEEEEEEC---C--eEEecCEEEEeeChhhH
Q 019274 63 IFEPWMDSMRTRG------CEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGISTL 120 (343)
Q Consensus 63 l~~~l~~~l~~~G------~~i~~~~~V~~I~~~~~~g~v~~V~~~---g--~~~~ad~VV~a~p~~~~ 120 (343)
|+.+|.+.+++.- ++|.++++|..|...+ |+|.+|+.- | ..+.++.||+|++....
T Consensus 141 i~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~--gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 141 IVKALSTRLKKKASENPELVKILLNSKVVDILRNN--GKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCC--CeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 6677777665432 5899999999999666 899999873 3 36789999999998765
No 204
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=89.70 E-value=1.2 Score=41.11 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=51.8
Q ss_pred HHHhhhcCCcccccHHHHHHHHHHHHHh--c-CCCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCC
Q 019274 18 LVQVGLFAPAEQCSAAATLGILYFIILA--H-QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC 94 (343)
Q Consensus 18 ~~~~~~~~~~~~~sa~~~~~~l~~~~~~--~-~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g 94 (343)
+.+.++++.....|+..+..++.+++.. . +..+.+.+-+-.-+++|+.+|..+|+++|+++.+++.|+.|..+...|
T Consensus 181 ~yW~tmFAFekWhSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~g 260 (587)
T COG4716 181 YYWQTMFAFEKWHSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPG 260 (587)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHHHHHHHHHcCCceEeccEEeeeeeccCcc
Confidence 3445566666778887777666555321 1 111122222333368899999999999999999999999999875324
No 205
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=89.66 E-value=1.1 Score=44.33 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274 62 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 119 (343)
Q Consensus 62 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~ 119 (343)
.+.+.|.+.+++. |++++ ...|.++..+++ +++.+|.+. |..+.||.||+|++.+.
T Consensus 97 ~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~-g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLF-QGEVEDLILEDN-DEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEEecC-CcEEEEEECCCCEEECCEEEEccCccc
Confidence 3556777778877 56665 557888876632 678899987 56899999999999984
No 206
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=89.51 E-value=1.5 Score=40.47 Aligned_cols=62 Identities=16% Similarity=0.349 Sum_probs=49.3
Q ss_pred CCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeChhhH
Q 019274 57 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGISTL 120 (343)
Q Consensus 57 gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~~~~ 120 (343)
|+|-..+.++..+.|+..|.+++++++|+.+...+| |.| .|++. + +++++|.+.++++-.-.
T Consensus 248 ~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~d-g~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~ 315 (506)
T KOG1335|consen 248 GVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGD-GPV-EIEVENAKTGKKETLECDVLLVSIGRRPF 315 (506)
T ss_pred cccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCC-Cce-EEEEEecCCCceeEEEeeEEEEEccCccc
Confidence 555556899999999999999999999999999887 654 34442 2 47899999999976443
No 207
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=89.30 E-value=1.3 Score=42.21 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=44.8
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK 125 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~ 125 (343)
..+.+.+.+.+++.|+++++++.|.+|..+ +++ .+..+|+++.+|.||++++...-..++.
T Consensus 179 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~---~~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~ 239 (427)
T TIGR03385 179 EEMNQIVEEELKKHEINLRLNEEVDSIEGE---ERV-KVFTSGGVYQADMVILATGIKPNSELAK 239 (427)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEecC---CCE-EEEcCCCEEEeCEEEECCCccCCHHHHH
Confidence 346777888899999999999999999753 333 2233477899999999998754333443
No 208
>PRK09077 L-aspartate oxidase; Provisional
Probab=89.20 E-value=1.8 Score=42.57 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=45.6
Q ss_pred hhhhHHHHHHHHHc-CCeEEcceeeeEEEecC----CCCeEEEEEEC----Ce--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDE----ERCCISDVVCG----KE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~----~~g~v~~V~~~----g~--~~~ad~VV~a~p~~~ 119 (343)
..+.+.|.+.+++. |++|+.++.|.++..++ ++|+|.+|... ++ .+.|+.||+|++...
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 45788888888765 89999999999998753 11688888652 33 578999999998865
No 209
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=89.15 E-value=1.2 Score=42.66 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=46.1
Q ss_pred CCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-Ce--EEecCEEEEeeChh
Q 019274 58 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE--TYSAGAVVLAVGIS 118 (343)
Q Consensus 58 G~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~--~~~ad~VV~a~p~~ 118 (343)
++-.-+.+.+.+.+++.|.+++++++|+++...+ +. ..+.++ ++ ++++|.|++|++-.
T Consensus 211 ~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~--~~-v~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 211 GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKD--DG-VLVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred cCCHHHHHHHHHHHHhCCeEEEccceEEEEEecC--Ce-EEEEEecCCCCEEEeeEEEEccCCc
Confidence 3446688999999999889999999999999877 33 345554 33 78999999999863
No 210
>PTZ00052 thioredoxin reductase; Provisional
Probab=89.13 E-value=1.4 Score=42.93 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=45.3
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
...+.+.+.+.+++.|+++++++.|++|...+ +.+ .|.+. |+++.+|.||++++...-
T Consensus 221 d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~--~~~-~v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 221 DRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD--DKI-KVLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC--CeE-EEEECCCCEEEcCEEEEeeCCCCC
Confidence 34467888899999999999999999998655 333 35554 677899999999987543
No 211
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=89.11 E-value=1.2 Score=46.11 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 119 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~ 119 (343)
.+.+.+.+.++++|++|++++.|++|..+ +++.+|++. |+++++|.||++++...
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~---~~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVGA---TKADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEcC---CceEEEEECCCCEEEcCEEEECCCCCc
Confidence 34566778889999999999999999743 345667765 67899999999998643
No 212
>PRK10262 thioredoxin reductase; Provisional
Probab=89.11 E-value=0.86 Score=41.52 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-----C--eEEecCEEEEeeChhh
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----K--ETYSAGAVVLAVGIST 119 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-----g--~~~~ad~VV~a~p~~~ 119 (343)
.+.+.+.+.+++.|+++++++.|++|.-++ +++.+|++. + +++.+|.||++++...
T Consensus 186 ~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~--~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p 248 (321)
T PRK10262 186 ILIKRLMDKVENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 248 (321)
T ss_pred HHHHHHHhhccCCCeEEEeCCEEEEEEcCC--ccEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc
Confidence 356777888889999999999999997654 445556542 1 3689999999988643
No 213
>PRK07538 hypothetical protein; Provisional
Probab=89.03 E-value=21 Score=33.77 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=40.1
Q ss_pred hhHHHHHHHHH-cCC-eEEcceeeeEEEecCCCCeEEEEEEC--C--eEEecCEEEEeeChhhHH
Q 019274 63 IFEPWMDSMRT-RGC-EFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 63 l~~~l~~~l~~-~G~-~i~~~~~V~~I~~~~~~g~v~~V~~~--g--~~~~ad~VV~a~p~~~~~ 121 (343)
|-+.|.+.+.+ .|. +|+++++|+++..+++ +.+..+... | .+++||.||-|-+..+..
T Consensus 104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~~adlvIgADG~~S~v 167 (413)
T PRK07538 104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD-VTVVFLGDRAGGDLVSVRGDVLIGADGIHSAV 167 (413)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC-ceEEEEeccCCCccceEEeeEEEECCCCCHHH
Confidence 45566666654 464 6999999999987764 433333321 2 378999999999998753
No 214
>PTZ00058 glutathione reductase; Provisional
Probab=89.02 E-value=1.7 Score=43.08 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=42.9
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CC-eEEecCEEEEeeChh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-ETYSAGAVVLAVGIS 118 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g-~~~~ad~VV~a~p~~ 118 (343)
..+.+.+.+.+++.|++|++++.|.+|..+++ +.+. +.. ++ +++++|.||++++..
T Consensus 278 ~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~-v~~~~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 278 ETIINELENDMKKNNINIITHANVEEIEKVKE-KNLT-IYLSDGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC-CcEE-EEECCCCEEEECCEEEECcCCC
Confidence 45778888899999999999999999986542 3333 333 33 579999999999864
No 215
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=88.97 E-value=1.8 Score=41.85 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=43.2
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CC--eEEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g--~~~~ad~VV~a~p~~~ 119 (343)
..+.+.+.+.+++.|++|++++.|++|..+.+ +++..+.. +| .++++|.||++++...
T Consensus 221 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~~~~~~~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 221 AELSKEVARLLKKLGVRVVTGAKVLGLTLKKD-GGVLIVAEHNGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecC-CCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence 44678888889999999999999999986211 33443433 34 3689999999998754
No 216
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=88.95 E-value=10 Score=34.68 Aligned_cols=80 Identities=21% Similarity=0.267 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCC--CCCCCCCeEEeeccccCCCCCccchHH
Q 019274 208 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR--GFTSFPNLFMAGDWITTRHGSWSQERS 285 (343)
Q Consensus 208 ~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~--~~~~~~~L~laGd~~~~g~~~~~~ega 285 (343)
.+.+...+.++-.|....|.+..+++... |...+ ..+.+...+- ...-+.|||++-.. .||| +.-+
T Consensus 401 VD~d~F~qkiwP~L~nRVP~fetakVqsa----WaGyy---D~NtfD~ngViG~HP~y~Nly~atGF--sghG---vqqs 468 (509)
T KOG2853|consen 401 VDHDYFYQKIWPHLANRVPAFETAKVQSA----WAGYY---DHNTFDDNGVIGEHPLYTNLYMATGF--SGHG---VQQS 468 (509)
T ss_pred cChHHHHhhhhHHHHhcccccceeeeeeh----hcccc---cccccccCCcccCCcceeeeeeeecc--cccc---hhcc
Confidence 44566788999999999999976555332 43221 1111111111 11235799998655 3554 4567
Q ss_pred HHHHHHHHHHHHHH
Q 019274 286 YVTGLEAANRVVDY 299 (343)
Q Consensus 286 ~~Sg~~aA~~il~~ 299 (343)
...|+..|+.|++.
T Consensus 469 ~avgRAiaElIldG 482 (509)
T KOG2853|consen 469 PAVGRAIAELILDG 482 (509)
T ss_pred hHHHHHHHHHHhcC
Confidence 78899999999874
No 217
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=88.94 E-value=1.1 Score=42.57 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=41.1
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeCh
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 117 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~ 117 (343)
...+.+.+.+.++++|++|+++++|+++. + +. |.++ |+++++|.||++++.
T Consensus 227 ~~~~~~~~~~~L~~~gV~v~~~~~v~~v~--~--~~---v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 227 DQALRKYGQRRLRRLGVDIRTKTAVKEVL--D--KE---VVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeEEEEe--C--CE---EEECCCCEEEccEEEEccCC
Confidence 45578888899999999999999999985 3 32 3344 678999999999874
No 218
>PLN02661 Putative thiazole synthesis
Probab=88.80 E-value=1.8 Score=39.94 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=41.9
Q ss_pred hhhHHHHHHHH-HcCCeEEcceeeeEEEecCCCCeEEEEEEC---------C------eEEecCEEEEeeCh
Q 019274 62 KIFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVCG---------K------ETYSAGAVVLAVGI 117 (343)
Q Consensus 62 ~l~~~l~~~l~-~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---------g------~~~~ad~VV~a~p~ 117 (343)
.+...|.+.+. +.|++|+.++.|.++..++ +++.||.++ + ..++|+.||+|++.
T Consensus 173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~--grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeEEecC--CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 35567777554 4689999999999999887 788888741 1 25799999999983
No 219
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=88.74 E-value=1.9 Score=43.12 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=45.9
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCC-CeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~-g~v~~V~~----~g~--~~~ad~VV~a~p~~~ 119 (343)
..+...+.+.+++.+++|+.++.|++|..++++ |+|+||.. +++ .+.|+.||+|++...
T Consensus 126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 457777777787777899999999999986421 58888865 243 578999999999864
No 220
>PRK02106 choline dehydrogenase; Validated
Probab=88.67 E-value=0.58 Score=46.36 Aligned_cols=50 Identities=10% Similarity=0.129 Sum_probs=40.4
Q ss_pred HcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce---EEecCEEEEeeChhhHHHhh
Q 019274 73 TRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE---TYSAGAVVLAVGISTLQELI 124 (343)
Q Consensus 73 ~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~---~~~ad~VV~a~p~~~~~~Ll 124 (343)
+.+.+|++++.|++|..++ +++++|++. +. .+.++.||+|+++-.+.+||
T Consensus 213 ~~nl~i~~~a~V~rI~~~~--~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LL 267 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEG--KRAVGVEYERGGGRETARARREVILSAGAINSPQLL 267 (560)
T ss_pred CCCcEEEcCCEEEEEEEeC--CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHH
Confidence 4568999999999999986 788898873 22 35789999999988776654
No 221
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=88.58 E-value=0.93 Score=42.76 Aligned_cols=40 Identities=25% Similarity=0.247 Sum_probs=34.4
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
+.+.++|||.+||. .|+. +++..|...|..+|+.|+.+.+
T Consensus 445 ~~t~i~gLy~aGdG--AG~a-rgI~~Aaa~Gi~~A~~i~~k~~ 484 (486)
T COG2509 445 LSTSIKGLYPAGDG--AGLA-RGIVSAAADGIKAAEGIARKYG 484 (486)
T ss_pred ceeeecceEEcccc--cccc-chhHHHhhhhHHHHHHHHHHhc
Confidence 45789999999999 4676 6888999999999999998765
No 222
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=88.27 E-value=22 Score=33.23 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-------C--eEEecCEEEEeeChhhH
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K--ETYSAGAVVLAVGISTL 120 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-------g--~~~~ad~VV~a~p~~~~ 120 (343)
|-+.|.+.+.+.|++++.+ .|++|..++ +.+ .|++. + .+++||.||-|.+....
T Consensus 94 fd~~L~~~a~~~G~~v~~~-~v~~v~~~~--~~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 94 FDSYLRERAQKAGAELIHG-LFLKLERDR--DGV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred HHHHHHHHHHhCCCEEEee-EEEEEEEcC--CeE-EEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 4456777778889999765 699998766 443 34432 2 37899999999998663
No 223
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=88.24 E-value=2.2 Score=41.47 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=43.3
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CC---eEEecCEEEEeeChh
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIS 118 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g---~~~~ad~VV~a~p~~ 118 (343)
...+.+.+.+.+++.|++|++++.|++|...+ +.+ .|+. ++ +++++|.||++++..
T Consensus 219 d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~-~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 219 DQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE--AKV-KVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred CHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC--CeE-EEEEecCCcceEEEeCEEEEEecCC
Confidence 44577888889999999999999999998655 433 3444 33 378999999999864
No 224
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=88.22 E-value=1.3 Score=41.49 Aligned_cols=47 Identities=19% Similarity=0.129 Sum_probs=37.6
Q ss_pred HHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274 68 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 119 (343)
Q Consensus 68 ~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~ 119 (343)
.+.+++.|++++++++|++|..++ . .|.++++++.+|++|+|++...
T Consensus 65 ~~~~~~~gv~~~~~~~V~~id~~~--~---~v~~~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 65 GEFAEQFNLRLFPHTWVTDIDAEA--Q---VVKSQGNQWQYDKLVLATGASA 111 (377)
T ss_pred HHHHHhCCCEEECCCEEEEEECCC--C---EEEECCeEEeCCEEEECCCCCC
Confidence 345677899999999999998765 3 2456777899999999999743
No 225
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.14 E-value=2.2 Score=41.20 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=42.6
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEE-EEEE--CC--eEEecCEEEEeeChh
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS-DVVC--GK--ETYSAGAVVLAVGIS 118 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~-~V~~--~g--~~~~ad~VV~a~p~~ 118 (343)
...+.+.+.+.+++.|++|++++.|++|..++ +.+. .+.. ++ +++++|.||++++..
T Consensus 214 d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 214 DTETAKTLQKALTKQGMKFKLGSKVTGATAGA--DGVSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred CHHHHHHHHHHHHhcCCEEEECcEEEEEEEcC--CeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 34477888899999999999999999998654 3332 2221 22 478999999999864
No 226
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=88.14 E-value=0.95 Score=38.63 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=50.0
Q ss_pred EeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274 53 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 120 (343)
Q Consensus 53 ~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~ 120 (343)
++|.|=.+..|++.|.+..++.|-+|..+ .|+++..+. +...+.++.+.+.||.||+|+++..-
T Consensus 62 GFPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss---kpF~l~td~~~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 62 GFPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSS---KPFKLWTDARPVTADAVILATGASAK 125 (322)
T ss_pred CCCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccC---CCeEEEecCCceeeeeEEEeccccee
Confidence 35665444569999999999999999988 678888775 33556677778999999999998553
No 227
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=87.99 E-value=23 Score=33.05 Aligned_cols=56 Identities=25% Similarity=0.115 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
..+-+.+.+.++ .++.+++++.|++|...+ +. +.|+++ |.+++|+.||-|.++...
T Consensus 87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~--~~-~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 87 ADFYEFLLERAA-AGGVIRLNARVTSIEETG--DG-VLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred HHHHHHHHHHhh-hCCeEEEccEEEEEEecC--ce-EEEEECCCCEEEeeEEEECCCcccc
Confidence 346677777777 567899999999999877 42 345665 679999999999986443
No 228
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=87.65 E-value=0.17 Score=48.37 Aligned_cols=59 Identities=27% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---C-eEEecCEEEEeeChhhHHHhhhh
Q 019274 66 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K-ETYSAGAVVLAVGISTLQELIKN 126 (343)
Q Consensus 66 ~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g-~~~~ad~VV~a~p~~~~~~Ll~~ 126 (343)
.|.+.+++.|++|++++.|.++..++ ++|++|++. | .+++|+.||=|++-..+..+..-
T Consensus 95 ~l~~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG~ 157 (428)
T PF12831_consen 95 VLDEMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAGA 157 (428)
T ss_dssp -----------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence 34445567899999999999999988 889999885 2 47899999999997666555433
No 229
>PLN02546 glutathione reductase
Probab=87.36 E-value=2.6 Score=41.73 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=43.7
Q ss_pred CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEE-ecCEEEEeeChhh
Q 019274 59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETY-SAGAVVLAVGIST 119 (343)
Q Consensus 59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~-~ad~VV~a~p~~~ 119 (343)
+...+.+.+.+.++++|++|++++.|.+|..+++ +.+ .+.++++++ .+|.||++++...
T Consensus 291 ~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~-g~v-~v~~~~g~~~~~D~Viva~G~~P 350 (558)
T PLN02546 291 FDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSAD-GSL-SLKTNKGTVEGFSHVMFATGRKP 350 (558)
T ss_pred cCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCC-CEE-EEEECCeEEEecCEEEEeecccc
Confidence 3455667788889999999999999999986543 543 455554444 5899999998654
No 230
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=86.70 E-value=2.1 Score=41.18 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=25.4
Q ss_pred HHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE
Q 019274 67 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC 101 (343)
Q Consensus 67 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~ 101 (343)
..+.+++.|+++++++.+.+|..+++ |++++|++
T Consensus 315 ~~~~l~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~ 348 (449)
T TIGR01316 315 EIAHAEEEGVKFHFLCQPVEIIGDEE-GNVRAVKF 348 (449)
T ss_pred HHHHHHhCCCEEEeccCcEEEEEcCC-CeEEEEEE
Confidence 34567788999999999999976443 67766654
No 231
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=86.41 E-value=1.6 Score=42.19 Aligned_cols=38 Identities=32% Similarity=0.328 Sum_probs=28.4
Q ss_pred CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274 261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
|..+|+|.+||-+. +. ..+..|+..|+.||..|.+.+.
T Consensus 428 Ts~~gVfa~GD~~~-g~--~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 428 TSNPKVFAAGDMRR-GQ--SLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred CCCCCEEEccccCC-Cc--hhHHHHHHHHHHHHHHHHHHHh
Confidence 45688899998865 32 2456788889999988888775
No 232
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=86.38 E-value=2.5 Score=38.33 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=46.4
Q ss_pred CchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274 59 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 120 (343)
Q Consensus 59 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~ 120 (343)
....|.+.+.+.++..|.++.. ..|.++...+ . ...|+++.++++|+.||+|++...-
T Consensus 59 ~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~--~-~F~v~t~~~~~~ak~vIiAtG~~~~ 116 (305)
T COG0492 59 LGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG--G-PFKVKTDKGTYEAKAVIIATGAGAR 116 (305)
T ss_pred chHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC--c-eEEEEECCCeEEEeEEEECcCCccc
Confidence 3456899999999988998888 7888887765 3 4678887656999999999998654
No 233
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=86.10 E-value=2.3 Score=39.43 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=40.7
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CCeEEecCEEEEeeChh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 118 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g~~~~ad~VV~a~p~~ 118 (343)
..+.+.+.+.++++|++++++++|++|. + + .|.+ +|+++++|.||++++..
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~--~---~v~~~~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGP--D--G---ALILADGRTLPADAILWATGAR 242 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEc--C--C---eEEeCCCCEEecCEEEEccCCC
Confidence 3467788888999999999999999884 3 3 2445 46789999999999864
No 234
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=85.18 E-value=2.8 Score=41.23 Aligned_cols=60 Identities=18% Similarity=0.083 Sum_probs=44.4
Q ss_pred hhhhHHHHHHHHHcCC--eEEcceeeeEEEecCC---CCeEEEEEEC--Ce--EEecCEEEEeeChhhHH
Q 019274 61 EKIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEE---RCCISDVVCG--KE--TYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~--~i~~~~~V~~I~~~~~---~g~v~~V~~~--g~--~~~ad~VV~a~p~~~~~ 121 (343)
..+.+.|..+++..|. .|++||+|++|...+| +|+ |.|++. |+ +..+|+||+|++.....
T Consensus 84 ~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~-W~V~~~~~g~~~~~~fD~VvvatG~~~~P 152 (531)
T PF00743_consen 84 SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGK-WEVTTENDGKEETEEFDAVVVATGHFSKP 152 (531)
T ss_dssp HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETE-EEEEETTTTEEEEEEECEEEEEE-SSSCE
T ss_pred HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCce-EEEEeecCCeEEEEEeCeEEEcCCCcCCC
Confidence 4588888888887775 7999999999988653 133 677775 32 45799999999986543
No 235
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=85.06 E-value=2.9 Score=39.66 Aligned_cols=87 Identities=18% Similarity=0.085 Sum_probs=48.0
Q ss_pred HHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCCC-CCCCeEEeeccccCCCCCccchHHHHHHHHHH
Q 019274 215 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLEAA 293 (343)
Q Consensus 215 ~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~-~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA 293 (343)
-.....+-+++|+++.++++..-+. . +..+...|.... +..++ .++||||||+-+.. -+.+-|+.+|..|+
T Consensus 285 ~~~Q~~~~r~Ipgle~a~~~r~G~~-~-~~~~i~~p~~l~--~~l~~k~~~~l~~AGqi~g~----~Gy~ea~a~G~~Ag 356 (436)
T PRK05335 285 WGEQKRVFRMIPGLENAEFVRYGVM-H-RNTFINSPKLLD--PTLQLKKRPNLFFAGQITGV----EGYVESAASGLLAG 356 (436)
T ss_pred HHHHHHHHhcccchhceEEEeceEE-e-eccccCChhhCc--hhccccCCCCEEeeeeecCc----hHHHHHHHHHHHHH
Confidence 4455667788999986544322221 1 111111222111 12222 57999999999643 23356788888888
Q ss_pred HHHHHHhCCCCcccccc
Q 019274 294 NRVVDYLGDGSFSKIIP 310 (343)
Q Consensus 294 ~~il~~~~~~~~~~~~~ 310 (343)
..+...+. |+...++|
T Consensus 357 ~n~~~~~~-g~~~~~~~ 372 (436)
T PRK05335 357 INAARLAL-GKEPVIPP 372 (436)
T ss_pred HHHHHHhc-CCCCCCCC
Confidence 77766553 34444454
No 236
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=84.93 E-value=3.4 Score=38.56 Aligned_cols=57 Identities=5% Similarity=0.112 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHH
Q 019274 62 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 62 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~ 121 (343)
.|.+.|.+.+++.+ ++++.+++|++|..++ +.+ .|.+++++++||.||-|-+..+..
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v-~v~~~~~~~~adlvIgADG~~S~v 162 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHN--DYS-IIKFDDKQIKCNLLIICDGANSKV 162 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeE-EEEEcCCEEeeCEEEEeCCCCchh
Confidence 46778888877765 7899999999998876 444 466665689999999999998754
No 237
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=84.73 E-value=2.8 Score=41.05 Aligned_cols=52 Identities=12% Similarity=0.265 Sum_probs=39.3
Q ss_pred HHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeChhh
Q 019274 66 PWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIST 119 (343)
Q Consensus 66 ~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~~~ 119 (343)
.+.+.+++ .|++|++++.|++|.-++ +++.+|++. + +++++|.||++++...
T Consensus 392 ~l~~~l~~~~gV~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 392 VLQDKLKSLPNVDILTSAQTTEIVGDG--DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred HHHHHHhcCCCCEEEECCeeEEEEcCC--CEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 45566665 599999999999998665 566667652 2 4689999999998644
No 238
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=84.59 E-value=48 Score=33.49 Aligned_cols=61 Identities=30% Similarity=0.287 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHcCC--eEEcceeeeEEEecCCC-CeEEEEEE-------CC--eEEecCEEEEeeChhhH-HHhh
Q 019274 63 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEER-CCISDVVC-------GK--ETYSAGAVVLAVGISTL-QELI 124 (343)
Q Consensus 63 l~~~l~~~l~~~G~--~i~~~~~V~~I~~~~~~-g~v~~V~~-------~g--~~~~ad~VV~a~p~~~~-~~Ll 124 (343)
+-+.|.+.+.+.|+ +++.+++|+++..++++ ..| .|++ +| ++++||.||-|=++.+. .+.+
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V-~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~l 216 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPV-TVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAI 216 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCE-EEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhc
Confidence 55667777877775 77899999999876431 123 2433 24 47899999999998775 3444
No 239
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=84.37 E-value=3.1 Score=40.04 Aligned_cols=38 Identities=32% Similarity=0.469 Sum_probs=27.2
Q ss_pred CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274 261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
|..+|+|.+||-.. +. ..+..|+..|..||..|.+.+.
T Consensus 415 Ts~~~VfA~GD~~~-~~--~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 415 TSLPGVFAGGDIVT-GA--ATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred cCCCCEEEeCCcCC-Cc--hHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888763 22 2456688888888888887765
No 240
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=84.10 E-value=3.7 Score=39.67 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=28.6
Q ss_pred CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274 261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
+..+|+|.+||-+. + + ..+..|+..|+.||..|.+.++
T Consensus 429 T~~~gVfa~GD~~~-~-~-~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 429 TTNPKIFAGGDAVR-G-A-DLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCCCCEEEECCcCC-C-c-cHHHHHHHHHHHHHHHHHHHhc
Confidence 45689999999864 2 2 2456688899999999888765
No 241
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=84.03 E-value=38 Score=31.88 Aligned_cols=40 Identities=13% Similarity=-0.049 Sum_probs=31.3
Q ss_pred CCCeEEeeccccCCCCC--ccchHHHHHHHHHHHHHHHHhCC
Q 019274 263 FPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDYLGD 302 (343)
Q Consensus 263 ~~~L~laGd~~~~g~~~--~~~ega~~Sg~~aA~~il~~~~~ 302 (343)
-+|+.++||.-+.-.|. .++..|+.||..||+.+.+.+..
T Consensus 269 ~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~ 310 (398)
T TIGR02028 269 VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRL 310 (398)
T ss_pred CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhc
Confidence 37899999987643332 67888999999999999876643
No 242
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=83.99 E-value=42 Score=32.30 Aligned_cols=39 Identities=13% Similarity=-0.054 Sum_probs=30.5
Q ss_pred CCCeEEeeccccCCCCC--ccchHHHHHHHHHHHHHHHHhC
Q 019274 263 FPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 263 ~~~L~laGd~~~~g~~~--~~~ega~~Sg~~aA~~il~~~~ 301 (343)
.+|+.++||..+.-.|. .++..|+.||..||+.+.+.+.
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~ 348 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSE 348 (450)
T ss_pred CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHh
Confidence 46899999976533332 6788899999999999987664
No 243
>PRK11445 putative oxidoreductase; Provisional
Probab=83.40 E-value=37 Score=31.27 Aligned_cols=52 Identities=12% Similarity=-0.024 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE--CCe--EEecCEEEEeeChhhH
Q 019274 65 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGISTL 120 (343)
Q Consensus 65 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~--~g~--~~~ad~VV~a~p~~~~ 120 (343)
+.|.+. .+.|++++.++.|+++..++ +. +.|+. +|+ +++||.||.|.+..+.
T Consensus 103 ~~L~~~-~~~gv~v~~~~~v~~i~~~~--~~-~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 103 LWLKSL-IPASVEVYHNSLCRKIWRED--DG-YHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred HHHHHH-HhcCCEEEcCCEEEEEEEcC--CE-EEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 344443 35689999999999998776 33 34553 343 6899999999999764
No 244
>PRK07846 mycothione reductase; Reviewed
Probab=83.27 E-value=4.5 Score=38.92 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=40.4
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
..+.+.+.+.+ +.|++++++++|++|..++ +.+ .|.++ ++++++|.||++++...-
T Consensus 207 ~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~--~~v-~v~~~~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 207 DDISERFTELA-SKRWDVRLGRNVVGVSQDG--SGV-TLRLDDGSTVEADVLLVATGRVPN 263 (451)
T ss_pred HHHHHHHHHHH-hcCeEEEeCCEEEEEEEcC--CEE-EEEECCCcEeecCEEEEEECCccC
Confidence 34555555544 5689999999999998665 443 35554 668999999999987543
No 245
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=82.83 E-value=2.6 Score=39.49 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=41.0
Q ss_pred HHHHHHHhhhcccCCCCceeeeE-EEecCCCccccCCCCCCCCCCCCC-CCCCeEEeeccccCCCCCccchHHHHHHHHH
Q 019274 215 AKAVSYLSKCIKDFSTATVMDHK-IRRFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLEA 292 (343)
Q Consensus 215 ~~~~~~L~~~~p~~~~~~~~~~~-~~r~~~~~~~~~~g~~~~~p~~~~-~~~~L~laGd~~~~g~~~~~~ega~~Sg~~a 292 (343)
..++..+-+.+|+++.++++..- .++. . +.. |. ...+..++ .++|||+||+-+.+ - +.+.|+.+|..|
T Consensus 311 ~~~Q~~~~r~IpGLe~a~~~r~Gy~~ey--~-~v~-~~--~l~~~l~~k~~~~lf~AGqi~G~--~--Gy~eaaa~G~~a 380 (392)
T PF01134_consen 311 WDVQKRIFRSIPGLENAEILRPGYAHEY--D-FVD-PP--QLLNTLETKKIPGLFFAGQINGT--E--GYEEAAAQGLIA 380 (392)
T ss_dssp HHHHHHHHTTSTTTTT--EEE--EEEEE--E-EE--GG--GBBTTSBBSSSBTEEE-GGGGTB-----SHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCChhcChhhheEEeeee--e-EEe-hh--hcccceEECCCCCceECCCCcch--h--HHHHHHHHHHHH
Confidence 45666777889999865443211 1111 0 000 11 11123334 48999999999643 2 345677788888
Q ss_pred HHHHHHHh
Q 019274 293 ANRVVDYL 300 (343)
Q Consensus 293 A~~il~~~ 300 (343)
+-.+...+
T Consensus 381 g~na~~~~ 388 (392)
T PF01134_consen 381 GINAARRL 388 (392)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776654
No 246
>PRK12831 putative oxidoreductase; Provisional
Probab=82.80 E-value=3.8 Score=39.55 Aligned_cols=38 Identities=29% Similarity=0.325 Sum_probs=29.0
Q ss_pred CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274 261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
|.++|+|.+||-+. |. ..+..|+..|+.||..|.+.+.
T Consensus 424 Ts~pgVfAaGD~~~-g~--~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 424 TSKEGVFAGGDAVT-GA--ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred cCCCCEEEeCCCCC-Cc--hHHHHHHHHHHHHHHHHHHHhc
Confidence 45689999999864 32 3567788999999999887764
No 247
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=82.66 E-value=2.9 Score=39.53 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~ 121 (343)
|.+.|.+.+. ...++++++|++|..++ +.+ .|... |.+++||.||.|-+.++..
T Consensus 107 l~~~L~~~~~--~~~v~~~~~v~~i~~~~--~~~-~v~~~~g~~~~ad~vVgADG~~S~v 161 (414)
T TIGR03219 107 FLDALLKHLP--EGIASFGKRATQIEEQA--EEV-QVLFTDGTEYRCDLLIGADGIKSAL 161 (414)
T ss_pred HHHHHHHhCC--CceEEcCCEEEEEEecC--CcE-EEEEcCCCEEEeeEEEECCCccHHH
Confidence 5566666553 45789999999998766 343 46554 6689999999999998753
No 248
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=81.72 E-value=5 Score=37.54 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH
Q 019274 63 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 63 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~ 121 (343)
|-..|.+.+.+. |++|+.+++|++++.++ +.+ .|++. |.+++||.||.|.+..+..
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~--~~~-~v~~~~g~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSA--EGN-RVTLESGAEIEAKWVIGADGANSQV 169 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcC--CeE-EEEECCCCEEEeeEEEEecCCCchh
Confidence 334555555543 68999999999999877 444 36665 6689999999999998754
No 249
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=81.56 E-value=5.6 Score=41.88 Aligned_cols=57 Identities=18% Similarity=0.150 Sum_probs=41.8
Q ss_pred hhhhHHHHHHHHHc----CCeEEcceeeeEEEecCCCCeEEEEEE----CCe--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTR----GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~----G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g~--~~~ad~VV~a~p~~~ 119 (343)
..+.+.|.+.+++. ++++..++.+.++..++ |+|.||.. +|+ .+.|+.||+|++...
T Consensus 139 ~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 205 (897)
T PRK13800 139 KDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEG--GRAVGAAALNTRTGEFVTVGAKAVILATGPCG 205 (897)
T ss_pred hhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC--CEEEEEEEEecCCCcEEEEECCEEEECCCccc
Confidence 45778888887765 45666666667887765 88888864 243 578999999999754
No 250
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=81.49 E-value=6.3 Score=37.91 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=39.9
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~ 119 (343)
..+.+.+.+.+ +.|.++++++.|+++..++ +.+ .|.+. |+++++|.||++++...
T Consensus 210 ~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~--~~v-~v~~~~g~~i~~D~vl~a~G~~p 265 (452)
T TIGR03452 210 EDISDRFTEIA-KKKWDIRLGRNVTAVEQDG--DGV-TLTLDDGSTVTADVLLVATGRVP 265 (452)
T ss_pred HHHHHHHHHHH-hcCCEEEeCCEEEEEEEcC--CeE-EEEEcCCCEEEcCEEEEeeccCc
Confidence 34556665544 4689999999999998765 443 35554 56899999999998643
No 251
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=81.47 E-value=2.9 Score=38.57 Aligned_cols=59 Identities=24% Similarity=0.305 Sum_probs=36.2
Q ss_pred CCCchhhhHHHHHHHH------HcCCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeCh
Q 019274 57 GTLREKIFEPWMDSMR------TRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGI 117 (343)
Q Consensus 57 gG~~~~l~~~l~~~l~------~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~ 117 (343)
+|+...+++.|.+.+= +.-.+|+.+++|+++...++ |++ .+.+. + .++++|.||+||+-
T Consensus 269 ~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~-~~~-~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 269 GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD-GGV-RLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSE-EEEEEETTT--EEEEEESEEEE---E
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC-CEE-EEEEEECCCCCeEEEecCEEEEcCCc
Confidence 5666667777766531 22358999999999998874 453 34442 2 46799999999974
No 252
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=81.30 E-value=5 Score=40.63 Aligned_cols=39 Identities=31% Similarity=0.443 Sum_probs=31.3
Q ss_pred CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274 261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 302 (343)
Q Consensus 261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~ 302 (343)
|.++|+|.+||-+. | + ..+..|+..|+.||..|.+.++.
T Consensus 615 Ts~~gVfAaGD~~~-g-~-~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 615 TSNPKIFAGGDAVR-G-A-DLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred cCCCCEEEcCCcCC-C-C-cHHHHHHHHHHHHHHHHHHHhCc
Confidence 56789999999865 3 2 35677999999999999988763
No 253
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=81.23 E-value=4.9 Score=38.42 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=41.5
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CCeEEecCEEEEeeChhh
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 119 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g~~~~ad~VV~a~p~~~ 119 (343)
...+.+.+.+.+++.|++++++++|++|. + .. |++ +|+++++|.||++++...
T Consensus 188 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~--~--~~---v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 188 DADMNQPILDELDKREIPYRLNEEIDAIN--G--NE---VTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred CHHHHHHHHHHHHhcCCEEEECCeEEEEe--C--CE---EEECCCCEEEeCEEEECcCCCc
Confidence 34577788889999999999999999985 2 22 344 366789999999998644
No 254
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=80.85 E-value=3.5 Score=42.72 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=38.0
Q ss_pred HHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274 67 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 119 (343)
Q Consensus 67 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~ 119 (343)
..+.++++|++++++++|++|..+. . .|.+. |.++.+|++|+|++...
T Consensus 60 ~~~~~~~~gv~~~~g~~V~~Id~~~--k---~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 60 SKDWYEKHGITLYTGETVIQIDTDQ--K---QVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred CHHHHHHCCCEEEcCCeEEEEECCC--C---EEEECCCcEeeCCEEEECCCCCc
Confidence 3456778899999999999998765 3 24555 66899999999999753
No 255
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=80.63 E-value=3.9 Score=38.52 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=36.1
Q ss_pred HHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274 69 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 119 (343)
Q Consensus 69 ~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~ 119 (343)
+.+++.|+++++++.|..|..++ .. |.++ |+++.+|++|+|++...
T Consensus 66 ~~~~~~~i~~~~g~~V~~id~~~--~~---v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 66 NWWQENNVHLHSGVTIKTLGRDT--RE---LVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred HHHHHCCCEEEcCCEEEEEECCC--CE---EEECCCCEEEcCEEEEccCCCC
Confidence 34567899999999999998765 32 4444 67899999999999754
No 256
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=80.14 E-value=7.2 Score=33.37 Aligned_cols=56 Identities=21% Similarity=0.209 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-------C-----eEEecCEEEEeeChhh
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIST 119 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-------g-----~~~~ad~VV~a~p~~~ 119 (343)
++-.|+...-+.|++|.-.+.|+.+...++ +||.+|.++ + -+++|+.||.|++.+.
T Consensus 98 ~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 98 FTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp HHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred HHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 566666666668999999999999987765 789999874 2 2789999999997654
No 257
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=80.06 E-value=1.9 Score=43.14 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274 66 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 118 (343)
Q Consensus 66 ~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~ 118 (343)
.|.+.+++.|.++++++.+++|..+ +++.+|+.. |..+.||-||+|++..
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g~---~~~~~vr~~DG~~i~ad~VV~a~GIr 242 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVGE---DKVEGVRFADGTEIPADLVVMAVGIR 242 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhcC---cceeeEeecCCCcccceeEEEecccc
Confidence 4666788999999999999999863 577889886 6789999999999864
No 258
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=79.94 E-value=6.6 Score=37.70 Aligned_cols=57 Identities=25% Similarity=0.151 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHcCC--eEEcceeeeEEEecCCCCeEEEEEEC-CeE--EecCEEEEeeChhhH
Q 019274 63 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG-KET--YSAGAVVLAVGISTL 120 (343)
Q Consensus 63 l~~~l~~~l~~~G~--~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~--~~ad~VV~a~p~~~~ 120 (343)
+-+.+..++++.+. +|+.+++|+.+..+.+ ++.|.|+++ +.+ ++||.||+|++....
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~-~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~ 145 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDED-TKRWTVTTSDGGTGELTADFVVVATGHLSE 145 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCC-CCeEEEEEcCCCeeeEecCEEEEeecCCCC
Confidence 67788888888776 7889999999888776 556888887 333 669999999998554
No 259
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=79.67 E-value=2.8 Score=38.07 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC---eEEecCEEEEeeChhhHHHhh
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK---ETYSAGAVVLAVGISTLQELI 124 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g---~~~~ad~VV~a~p~~~~~~Ll 124 (343)
++-++|.+..++.||-+..+-+|.+....+ |+|+.|.+.+ .-++||.+|+|++..--.-|.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~--~~v~~i~trn~~diP~~a~~~VLAsGsffskGLv 322 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG--GRVTEIYTRNHADIPLRADFYVLASGSFFSKGLV 322 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeC--CeEEEEEecccccCCCChhHeeeeccccccccch
Confidence 588999999999999999999999999998 8898888763 357999999999985544443
No 260
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.30 E-value=5.4 Score=36.58 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=46.5
Q ss_pred CCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChh
Q 019274 58 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 118 (343)
Q Consensus 58 G~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~ 118 (343)
|+-+.+.+-+.+.++..|.++|.++.++++...++ |....+...+....+|.+++|++-.
T Consensus 227 ~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~-g~~~~i~~~~~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 227 GFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDD-GLELVITSHGTIEDVDTLLWAIGRK 286 (478)
T ss_pred chhHHHHHHHHHHhhhcceeecccccceeeeecCC-CceEEEEeccccccccEEEEEecCC
Confidence 33566778888899999999999999999988775 5434444556555699999999864
No 261
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=79.29 E-value=3.3 Score=34.46 Aligned_cols=51 Identities=18% Similarity=0.250 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCeEEcceeeeEEEecCCCCeE----EEE---EEC-CeEEecCEEEEeeChh
Q 019274 66 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCI----SDV---VCG-KETYSAGAVVLAVGIS 118 (343)
Q Consensus 66 ~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v----~~V---~~~-g~~~~ad~VV~a~p~~ 118 (343)
.+.+.++..+.+++++++|.+|.... +++ ..+ ... +.++.+|+||+|++..
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPES--KRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEEST--TEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred ccccccccceEEEeeccccccccccc--cccccCcccceeeccCCceEecCCeeeecCccc
Confidence 45555677899999999999998876 532 122 222 4589999999999963
No 262
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=78.88 E-value=4.2 Score=38.89 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=36.5
Q ss_pred HHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--CeEEe--cCEEEEeeChh
Q 019274 67 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYS--AGAVVLAVGIS 118 (343)
Q Consensus 67 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~~~~--ad~VV~a~p~~ 118 (343)
..+.+++.|+++++++.|++|..++ ..| .+... +++++ +|++|+|++..
T Consensus 62 ~~~~~~~~gv~~~~~~~V~~id~~~--~~v-~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 62 TPEEFIKSGIDVKTEHEVVKVDAKN--KTI-TVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred CHHHHHHCCCeEEecCEEEEEECCC--CEE-EEEECCCCCEEEecCCEEEECCCCC
Confidence 3455777899999999999998776 443 34432 44566 99999999984
No 263
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=78.77 E-value=3.9 Score=37.72 Aligned_cols=55 Identities=25% Similarity=0.149 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCC-eEEEEEE-----CCeEEecCEEEEeeCh
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC-CISDVVC-----GKETYSAGAVVLAVGI 117 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g-~v~~V~~-----~g~~~~ad~VV~a~p~ 117 (343)
+.+.+.-.+++.+..++++++|++|...++.+ ..+.|++ +++++.|++||++++.
T Consensus 97 f~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 97 FNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp HHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred HHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 55555555566676699999999999876311 3567777 2468999999999984
No 264
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=78.62 E-value=7.3 Score=38.80 Aligned_cols=85 Identities=19% Similarity=0.130 Sum_probs=46.9
Q ss_pred HHHHHHHhhhcccCCCCceeeeEEEecCCCc--cccCCCCCCCCCCCCC-CCCCeEEeeccccCCCCCccchHHHHHHHH
Q 019274 215 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSL--THFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLE 291 (343)
Q Consensus 215 ~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~--~~~~~g~~~~~p~~~~-~~~~L~laGd~~~~g~~~~~~ega~~Sg~~ 291 (343)
..++..+-+++|++..++++ +...+. -.+.|.. ..+..++ .++|||+||+-. |- -+.+.|..+|..
T Consensus 313 ~~~q~~i~~~ipGle~a~~~-----r~gy~~e~~~i~p~~--l~~~le~k~~~gLf~AGqi~--Gt--~Gy~eAaa~Gl~ 381 (617)
T TIGR00136 313 EDVQLQIVRSIPGLENAEIL-----RPGYAIEYDFFDPRQ--LKPTLETKLIQGLFFAGQIN--GT--TGYEEAAAQGLM 381 (617)
T ss_pred HHHHHHHHHcCcCcccceEe-----ccccceEEeEEChhh--CchhheeCCCCCeEEccccC--Cc--chHHHHHHHHHH
Confidence 45566666779999764432 221111 0111211 1123334 489999999964 33 346778888888
Q ss_pred HHHHHHHHhCCCCccccccc
Q 019274 292 AANRVVDYLGDGSFSKIIPV 311 (343)
Q Consensus 292 aA~~il~~~~~~~~~~~~~~ 311 (343)
|+-.+...+. |....++++
T Consensus 382 Ag~naa~~~~-~~~~~~l~r 400 (617)
T TIGR00136 382 AGINAALKLQ-NKEPFILKR 400 (617)
T ss_pred HHHHHHHHhc-CCCCCCCCc
Confidence 8766655443 344455543
No 265
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=78.58 E-value=7.1 Score=34.72 Aligned_cols=53 Identities=23% Similarity=0.291 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEE----CC--eEEecCEEEEeeChh
Q 019274 63 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS 118 (343)
Q Consensus 63 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~----~g--~~~~ad~VV~a~p~~ 118 (343)
....+.+.+++. |+++++++.|++|..+ +++..+++ ++ .++++|.||++++..
T Consensus 178 ~~~~~~~~l~~~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 178 AEKILLDRLRKNPNIEFLWNSTVKEIVGD---NKVEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred cCHHHHHHHHhCCCeEEEeccEEEEEEcc---CcEEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 345666777777 9999999999999753 34445543 13 478999999999864
No 266
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=78.54 E-value=6.2 Score=36.84 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=44.9
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEE---EEECCeEEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD---VVCGKETYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~---V~~~g~~~~ad~VV~a~p~~~ 119 (343)
..+.+.+.+.++++|+++++++.|.+|.... +.+.. +...+..+++|.++.+++...
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGKG--NTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEccc--CcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 3588899999999999999999999999776 33332 333467899999999997643
No 267
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=78.07 E-value=2.8 Score=36.95 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=29.3
Q ss_pred CCCCeEEeeccccC--CCC-C-ccchHHHHHHHHHHHHHHHHhC
Q 019274 262 SFPNLFMAGDWITT--RHG-S-WSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 262 ~~~~L~laGd~~~~--g~~-~-~~~ega~~Sg~~aA~~il~~~~ 301 (343)
-+||||.||-.+.. |.| + ...-+.+.||+.||+.|+++++
T Consensus 211 ~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 211 VVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred ccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 37999999987752 322 1 3445567899999999998863
No 268
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=77.55 E-value=2.9 Score=36.92 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=29.5
Q ss_pred CCCCeEEeeccccC--CCC-C-ccchHHHHHHHHHHHHHHHHhC
Q 019274 262 SFPNLFMAGDWITT--RHG-S-WSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 262 ~~~~L~laGd~~~~--g~~-~-~~~ega~~Sg~~aA~~il~~~~ 301 (343)
=+||||.+|-.... |.| + ...-|.+.||+.||+.|+++++
T Consensus 212 ~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 212 VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhh
Confidence 37999999987652 222 1 3445567899999999999876
No 269
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=77.48 E-value=2.9 Score=39.17 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=49.7
Q ss_pred cCCCchhhhHHHHH----HHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHHHhhhh
Q 019274 56 RGTLREKIFEPWMD----SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKN 126 (343)
Q Consensus 56 ~gG~~~~l~~~l~~----~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~~ 126 (343)
++.|...|.+.|.+ .+++.|++|+-|+.|+++.... +++ -+.+. |.+++.|.||+|++-.--.+|...
T Consensus 384 k~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~--~nl-~lkL~dG~~l~tD~vVvavG~ePN~ela~~ 456 (659)
T KOG1346|consen 384 KYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCC--KNL-VLKLSDGSELRTDLVVVAVGEEPNSELAEA 456 (659)
T ss_pred cCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhc--cce-EEEecCCCeeeeeeEEEEecCCCchhhccc
Confidence 36666666666654 5778899999999999998776 444 35565 779999999999986544445443
No 270
>PRK06475 salicylate hydroxylase; Provisional
Probab=76.50 E-value=9.7 Score=35.82 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEE---CC-eEEecCEEEEeeChhhHH-Hhh
Q 019274 62 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGISTLQ-ELI 124 (343)
Q Consensus 62 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~---~g-~~~~ad~VV~a~p~~~~~-~Ll 124 (343)
.|.+.|.+.+.+. |++|+++++|+++..++ +.+ .|+. ++ ++++||.||-|=+..+.. +.+
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~--~~v-~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~ 173 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTG--NSI-TATIIRTNSVETVSAAYLIACDGVWSMLRAKA 173 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCC--Cce-EEEEEeCCCCcEEecCEEEECCCccHhHHhhc
Confidence 4667777777654 78999999999998766 444 3433 33 478999999999998754 444
No 271
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=76.46 E-value=9 Score=36.59 Aligned_cols=58 Identities=9% Similarity=0.111 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHcC---CeEEcceeeeEEEec-----CCCCeEEEEEEC-CeEEecCEEEEeeChhhHH
Q 019274 63 IFEPWMDSMRTRG---CEFLDGRRVTDFIYD-----EERCCISDVVCG-KETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 63 l~~~l~~~l~~~G---~~i~~~~~V~~I~~~-----~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~ 121 (343)
|.+.|.+.+++.+ ++++.+++|++|..+ ++... +.|++. |++++||.||-|=+..+..
T Consensus 119 l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~-v~v~~~~g~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 119 IQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW-VHITLSDGQVLYTKLLIGADGSNSNV 185 (437)
T ss_pred HHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc-eEEEEcCCCEEEeeEEEEecCCCChh
Confidence 6677788887765 799999999999863 11022 346554 6789999999999998754
No 272
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=76.32 E-value=7.7 Score=38.03 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=39.4
Q ss_pred HHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeChhh
Q 019274 65 EPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIST 119 (343)
Q Consensus 65 ~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~~~ 119 (343)
+.+.+.+++ .|++|++++.|++|..++ +++.+|.+. + +++.+|.|+++++...
T Consensus 390 ~~l~~~l~~~~gI~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 390 QVLQDKLRSLPNVTIITNAQTTEVTGDG--DKVTGLTYKDRTTGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred HHHHHHHhcCCCcEEEECcEEEEEEcCC--CcEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence 345555665 599999999999998665 666666542 3 3689999999998743
No 273
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=76.32 E-value=9.9 Score=37.92 Aligned_cols=83 Identities=18% Similarity=0.123 Sum_probs=43.0
Q ss_pred HHHHHHHhhhcccCCCCceeeeEEEecCCCcc-cc-CCCCCCCCCCCCC-CCCCeEEeeccccCCCCCccchHHHHHHHH
Q 019274 215 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLT-HF-FPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLE 291 (343)
Q Consensus 215 ~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~-~~-~~g~~~~~p~~~~-~~~~L~laGd~~~~g~~~~~~ega~~Sg~~ 291 (343)
..+...+-+.+|+++.+++ .|...++. -| .|.. ..+..++ .++||||||.-..+ - +.|.|..+|..
T Consensus 315 ~~~Q~~~~r~ipGle~a~i-----~r~gy~ieyd~i~p~~--L~~~Le~k~~~~lf~AGQinGt--~--GYeEaaaqGl~ 383 (618)
T PRK05192 315 EDVQLEMLRSIPGLENAEI-----LRPGYAIEYDYVDPRQ--LKPTLETKKIKGLFFAGQINGT--T--GYEEAAAQGLI 383 (618)
T ss_pred HHHHHHHHhcCcCccceeE-----eecccceeecccChhh--cchhheecCCCCeEECcccCCC--h--HHHHHHHHHHH
Confidence 4556667788999976443 33322221 11 1221 1233444 58999999988543 2 33555555555
Q ss_pred HHHHHHHHhCCCCcccccc
Q 019274 292 AANRVVDYLGDGSFSKIIP 310 (343)
Q Consensus 292 aA~~il~~~~~~~~~~~~~ 310 (343)
|.-.....+. +...+++
T Consensus 384 AgiNaa~~~~--~~~~~~~ 400 (618)
T PRK05192 384 AGINAALKVQ--GEPFILK 400 (618)
T ss_pred HHHHHHHHhc--CCCCCCC
Confidence 5444433333 3344444
No 274
>PRK07236 hypothetical protein; Provisional
Probab=76.28 E-value=8.3 Score=36.04 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~ 121 (343)
+.+.|.+.+ .+.+|+++++|++|..++ +.|. |+.. |++++||.||.|=+..+..
T Consensus 102 l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 102 LYRALRAAF--PAERYHLGETLVGFEQDG--DRVT-ARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred HHHHHHHhC--CCcEEEcCCEEEEEEecC--CeEE-EEECCCCEEEeCEEEECCCCCchH
Confidence 445554433 246799999999998876 4443 5554 6789999999998887643
No 275
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.01 E-value=10 Score=35.61 Aligned_cols=109 Identities=12% Similarity=0.043 Sum_probs=66.1
Q ss_pred ccCCCCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHH--HhcCCCceeEeecCCCchhhhHHHHHHHHHcCCeEE
Q 019274 2 IQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFL 79 (343)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~ 79 (343)
++.|+++.+..-++..+ --...+++++...+.....++ +++-+...+.||--|.++ |.+.+-+.+.=.|+=--
T Consensus 230 ~~~rltp~lqs~vl~aI----aM~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYGqGE-LpQcFCRlcAVfGgIYc 304 (547)
T KOG4405|consen 230 KTMRLTPKLQSIVLHAI----AMLSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQGE-LPQCFCRLCAVFGGIYC 304 (547)
T ss_pred HhcCCChhhHHHHHHHH----HhcCcccccHHHHHHHHHHHHHHhhccCCCcceeeccCCCc-chHHHHHHHHHhcceEE
Confidence 44556555554443333 223344566555555444442 233334457788777444 99999998877788777
Q ss_pred cceeeeEEEecCCCCeEE-EEEECCeEEecCEEEEee
Q 019274 80 DGRRVTDFIYDEERCCIS-DVVCGKETYSAGAVVLAV 115 (343)
Q Consensus 80 ~~~~V~~I~~~~~~g~v~-~V~~~g~~~~ad~VV~a~ 115 (343)
++.+|+.|..+.+..+++ ++.-.|+.+.+.++|++-
T Consensus 305 Lr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~ 341 (547)
T KOG4405|consen 305 LRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVSP 341 (547)
T ss_pred eccchhheeecccccchhhhHhhhcchhcceeeeecC
Confidence 999999999987322222 122227788888887753
No 276
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=75.65 E-value=2.8 Score=35.88 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=29.7
Q ss_pred CCCCeEEeeccccC--CCC-C-ccchHHHHHHHHHHHHHHHHhC
Q 019274 262 SFPNLFMAGDWITT--RHG-S-WSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 262 ~~~~L~laGd~~~~--g~~-~-~~~ega~~Sg~~aA~~il~~~~ 301 (343)
-.||||.||-.+.. |.| + ...-|.+.||+.||+.|++++.
T Consensus 217 V~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 217 VYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred ccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 47999999987752 322 1 3445567899999999999875
No 277
>PTZ00367 squalene epoxidase; Provisional
Probab=75.57 E-value=90 Score=31.08 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=27.9
Q ss_pred CCCeEEeeccccCCCCC--ccchHHHHHHHHHHHHHHH
Q 019274 263 FPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 263 ~~~L~laGd~~~~g~~~--~~~ega~~Sg~~aA~~il~ 298 (343)
.+|+.+.||..++-+|. ++|.-|+..+...++.|..
T Consensus 336 ~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~ 373 (567)
T PTZ00367 336 IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTG 373 (567)
T ss_pred CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 47999999999877774 6677778888877777743
No 278
>PRK05868 hypothetical protein; Validated
Probab=75.52 E-value=8.7 Score=35.81 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=37.6
Q ss_pred HcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhHH-Hhh
Q 019274 73 TRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELI 124 (343)
Q Consensus 73 ~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~~-~Ll 124 (343)
..|++++++++|++|..++ +.| .|... |++++||.||-|=+..+.. +.+
T Consensus 116 ~~~v~i~~~~~v~~i~~~~--~~v-~v~~~dg~~~~adlvIgADG~~S~vR~~~ 166 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDG--DSV-RVTFERAAAREFDLVIGADGLHSNVRRLV 166 (372)
T ss_pred cCCcEEEeCCEEEEEEecC--CeE-EEEECCCCeEEeCEEEECCCCCchHHHHh
Confidence 3588999999999998765 444 46554 6789999999999987753 444
No 279
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=75.29 E-value=4.9 Score=37.24 Aligned_cols=52 Identities=23% Similarity=0.178 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
+...+.+.+++.|++++.+ +|++|..++ .. |.++ |+++++|++|+|++....
T Consensus 56 ~~~~~~~~~~~~gv~~~~~-~v~~id~~~--~~---V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 56 IRIDLRRLARQAGARFVIA-EATGIDPDR--RK---VLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred hcccHHHHHHhcCCEEEEE-EEEEEeccc--CE---EEECCCCcccccEEEEccCCCCC
Confidence 4445566677789998876 799998765 32 5555 568999999999997543
No 280
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=75.18 E-value=8.9 Score=37.98 Aligned_cols=54 Identities=24% Similarity=0.382 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 119 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~ 119 (343)
.+.+.+.+.+++.|++++ +++|++|..++ . .+.|.+.++.+.+|+||+|++...
T Consensus 61 ~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~--~-~~~V~~~~g~~~a~~lVlATGa~p 114 (555)
T TIGR03143 61 ELMQEMRQQAQDFGVKFL-QAEVLDVDFDG--D-IKTIKTARGDYKTLAVLIATGASP 114 (555)
T ss_pred HHHHHHHHHHHHcCCEEe-ccEEEEEEecC--C-EEEEEecCCEEEEeEEEECCCCcc
Confidence 477888888888899985 77899988754 2 345666655789999999999853
No 281
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=75.13 E-value=8.5 Score=36.56 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=35.0
Q ss_pred HHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--CeEEe--cCEEEEeeChh
Q 019274 69 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYS--AGAVVLAVGIS 118 (343)
Q Consensus 69 ~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~~~~--ad~VV~a~p~~ 118 (343)
+.+++.|+++++++.|++|..++ +.+ .+... +++++ +|+||+|++..
T Consensus 52 ~~~~~~gv~~~~~~~V~~id~~~--~~v-~~~~~~~~~~~~~~yd~lIiATG~~ 102 (427)
T TIGR03385 52 VFIKKRGIDVKTNHEVIEVNDER--QTV-VVRNNKTNETYEESYDYLILSPGAS 102 (427)
T ss_pred HHHHhcCCeEEecCEEEEEECCC--CEE-EEEECCCCCEEecCCCEEEECCCCC
Confidence 34477899999999999998765 443 34433 34677 99999999973
No 282
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=75.11 E-value=11 Score=32.27 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-------C-----eEEecCEEEEeeChhh
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIST 119 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-------g-----~~~~ad~VV~a~p~~~ 119 (343)
++-.|+...-+.|++|...+.|+.+...++ .+|.||.++ + -+++|+.||.+|+.+.
T Consensus 111 ~~skl~~~a~~aGaki~n~~~veDvi~r~~-~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda 178 (262)
T COG1635 111 FASKLAARALDAGAKIFNGVSVEDVIVRDD-PRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDA 178 (262)
T ss_pred HHHHHHHHHHhcCceeeecceEEEEEEecC-CceEEEEEecchhhhcccccCcceeeEEEEEeCCCCch
Confidence 556666666678999999999999988773 378888774 1 2679999999998764
No 283
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=74.33 E-value=13 Score=35.96 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=42.0
Q ss_pred chhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---C--eEEecCEEEEeeChhh
Q 019274 60 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIST 119 (343)
Q Consensus 60 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g--~~~~ad~VV~a~p~~~ 119 (343)
...+.+.+.+.+++. ++|++++.|++|..++ +.+ .+++. + .++++|.||++++...
T Consensus 214 d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~--~~~-~v~~~~~~~~~~~i~~D~vi~a~G~~p 274 (471)
T PRK06467 214 DKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKE--DGI-YVTMEGKKAPAEPQRYDAVLVAVGRVP 274 (471)
T ss_pred CHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcC--CEE-EEEEEeCCCcceEEEeCEEEEeecccc
Confidence 345677888888888 9999999999998765 433 34432 2 3689999999998743
No 284
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=74.00 E-value=9.1 Score=36.77 Aligned_cols=60 Identities=25% Similarity=0.372 Sum_probs=48.1
Q ss_pred cCCCchhhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCC-eEEEEEEC---C--eEEecCEEEEeeCh
Q 019274 56 RGTLREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERC-CISDVVCG---K--ETYSAGAVVLAVGI 117 (343)
Q Consensus 56 ~gG~~~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g-~v~~V~~~---g--~~~~ad~VV~a~p~ 117 (343)
.|..+..++++|.+.+++ .+.+|+.++.+.+|..++ + .+.||.+. + .++.|+.||+|++.
T Consensus 128 ~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~--~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 128 ADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIED--GIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred cCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcC--CceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 344467799999999876 589999999999999988 5 45588774 2 36789999999986
No 285
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=73.98 E-value=9.2 Score=38.62 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=29.1
Q ss_pred CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274 261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
|..+|+|.+||-+. | + ..+..|+..|+.||..|...+.
T Consensus 598 Ts~~gVfA~GD~~~-g-~-~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 598 THLKKVFAGGDAVH-G-A-DLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred cCCCCEEEcCCCCC-C-c-hHHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999864 3 2 3567788999999999987764
No 286
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=73.11 E-value=5.6 Score=41.52 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=37.3
Q ss_pred HHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274 67 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 119 (343)
Q Consensus 67 l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~ 119 (343)
..+.+++.|++++++++|++|..+. + .|.++ |.++.+|++|+|++...
T Consensus 65 ~~~~~~~~gI~~~~g~~V~~Id~~~---~--~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 65 REGFYEKHGIKVLVGERAITINRQE---K--VIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred CHHHHHhCCCEEEcCCEEEEEeCCC---c--EEEECCCcEEECCEEEECCCCCc
Confidence 3456778899999999999997654 2 24555 56899999999999753
No 287
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=72.72 E-value=6.7 Score=37.62 Aligned_cols=43 Identities=33% Similarity=0.386 Sum_probs=32.4
Q ss_pred CCCCCCCeEEeeccccCCC-CC-----ccchHHHHHHHHHHHHHHHHhC
Q 019274 259 GFTSFPNLFMAGDWITTRH-GS-----WSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~-~~-----~~~ega~~Sg~~aA~~il~~~~ 301 (343)
.+|.++|||.+|.-..+|. |. .++-.|+..|.+||+.|..++.
T Consensus 350 GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~~~ 398 (518)
T COG0029 350 GRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRLA 398 (518)
T ss_pred CcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhcccc
Confidence 4578999999999887643 21 2344567899999999998764
No 288
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=72.25 E-value=11 Score=38.97 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=28.7
Q ss_pred CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274 261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
|..+|+|.+||-.. | + ..+..|+..|+.||..|.+.+.
T Consensus 713 Ts~~gVfA~GD~~~-g-~-~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 713 SSIPGIYAGGDIVR-G-G-ATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCCCEEEeCCccC-C-c-HHHHHHHHHHHHHHHHHHHHhc
Confidence 45689999999864 3 2 3566788899999999887654
No 289
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=72.15 E-value=12 Score=36.00 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=40.1
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-CC--eEEecCEEEEeeChh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIS 118 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-~g--~~~~ad~VV~a~p~~ 118 (343)
..+.+.+.+.+++. ++|+++++|.+|..+++ .++. ++. ++ .++++|.||++++..
T Consensus 210 ~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~-~~~~~~~~~~i~~D~vi~a~G~~ 267 (460)
T PRK06292 210 PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGD-EKVE-ELEKGGKTETIEADYVLVATGRR 267 (460)
T ss_pred HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCC-ceEE-EEEcCCceEEEEeCEEEEccCCc
Confidence 34677788888888 99999999999976541 2332 322 23 478999999998763
No 290
>PRK13984 putative oxidoreductase; Provisional
Probab=71.94 E-value=11 Score=37.72 Aligned_cols=37 Identities=32% Similarity=0.372 Sum_probs=25.7
Q ss_pred CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274 261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
|.++|+|.+||-+. + + .+..|+..|+.||..|...+.
T Consensus 566 Ts~~gVfAaGD~~~-~-~--~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 566 TSIPWLFAGGDIVH-G-P--DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred cCCCCEEEecCcCC-c-h--HHHHHHHHHHHHHHHHHHHhc
Confidence 45678888888864 2 2 234578888888888877653
No 291
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=71.79 E-value=5 Score=39.00 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhh
Q 019274 63 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 119 (343)
Q Consensus 63 l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~ 119 (343)
+-+.|.+.|+..- ..| ....|++|..+++ .+|++|.+. |..+.|+.||+|++...
T Consensus 102 Y~~~mk~~le~~~NL~l-~q~~v~dli~e~~-~~v~GV~t~~G~~~~a~aVVlTTGTFL 158 (621)
T COG0445 102 YRRAMKNELENQPNLHL-LQGEVEDLIVEEG-QRVVGVVTADGPEFHAKAVVLTTGTFL 158 (621)
T ss_pred HHHHHHHHHhcCCCcee-hHhhhHHHhhcCC-CeEEEEEeCCCCeeecCEEEEeecccc
Confidence 4445555565443 333 3447888888762 368999997 77999999999999764
No 292
>PLN02661 Putative thiazole synthesis
Probab=71.67 E-value=4.8 Score=37.21 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=30.8
Q ss_pred CCCCeEEeeccccC--CCC-C-ccchHHHHHHHHHHHHHHHHhCC
Q 019274 262 SFPNLFMAGDWITT--RHG-S-WSQERSYVTGLEAANRVVDYLGD 302 (343)
Q Consensus 262 ~~~~L~laGd~~~~--g~~-~-~~~ega~~Sg~~aA~~il~~~~~ 302 (343)
=+||||.+|-.+.. |.| + ...-|.+.||+.||+.|+++++.
T Consensus 285 v~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 285 VVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred ccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 37999999987752 322 1 34555678999999999999984
No 293
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=71.56 E-value=6.2 Score=37.62 Aligned_cols=79 Identities=13% Similarity=-0.012 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCCCC-CCCCeEEeeccccCCCCCccchHHHHHHHHH
Q 019274 214 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLEA 292 (343)
Q Consensus 214 ~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~~~-~~~~L~laGd~~~~g~~~~~~ega~~Sg~~a 292 (343)
...+...+-+++|+++.++++..-+. ...+ +...|... .+..++ .++||||||.-+.+ - +. +.|..+|..|
T Consensus 283 ~~~~Q~~~~r~ipgle~a~~~r~g~~-~~~~-~i~~p~~L--~~~l~~k~~~~lf~AGQi~G~--~-GY-~Eaaa~Gl~a 354 (433)
T TIGR00137 283 RWGEQKRVFRLIPGLENAEFVRMGVM-HRNT-FINSPQLL--TASLHFKDRQTLFFAGQLTGV--E-GY-VASTAGGWLA 354 (433)
T ss_pred CHHHHHHHHhcCcCccceEEeecceE-Eeee-eeCCHHHh--hHHhccCCCCCEEECcccccc--h-HH-HHHHHHHHHH
Confidence 34555667778999986554321111 0011 11111111 122233 57999999988643 2 23 4456666666
Q ss_pred HHHHHHHh
Q 019274 293 ANRVVDYL 300 (343)
Q Consensus 293 A~~il~~~ 300 (343)
+-.+...+
T Consensus 355 gina~~~~ 362 (433)
T TIGR00137 355 GINAARLA 362 (433)
T ss_pred HHHHHHHH
Confidence 55554443
No 294
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=71.33 E-value=13 Score=34.33 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCeEEcceeeeEEEec
Q 019274 65 EPWMDSMRTRGCEFLDGRRVTDFIYD 90 (343)
Q Consensus 65 ~~l~~~l~~~G~~i~~~~~V~~I~~~ 90 (343)
..+.+.++++|+++++++.|.+++-+
T Consensus 214 ~~~~~~l~~~gi~i~~~~~v~~i~~~ 239 (352)
T PRK12770 214 KYEIERLIARGVEFLELVTPVRIIGE 239 (352)
T ss_pred HHHHHHHHHcCCEEeeccCceeeecC
Confidence 44556688889999999999998643
No 295
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=70.97 E-value=19 Score=36.51 Aligned_cols=59 Identities=3% Similarity=-0.052 Sum_probs=40.1
Q ss_pred chhhhHHHHHHH-HHcCCeEEcceeeeEEEecCCCCeEEEEEEC----C------------eEEecCEEEEeeChhh
Q 019274 60 REKIFEPWMDSM-RTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K------------ETYSAGAVVLAVGIST 119 (343)
Q Consensus 60 ~~~l~~~l~~~l-~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g------------~~~~ad~VV~a~p~~~ 119 (343)
...+.+.+.+.+ ++.|++|++++.|++|..+++ ++...|.+. + +++++|.||+|++...
T Consensus 352 d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~-~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~P 427 (659)
T PTZ00153 352 DADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKG-NQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKP 427 (659)
T ss_pred CHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC-ceEEEEEEeccccccccccccccccceEEEcCEEEEEECccc
Confidence 344666666654 678999999999999986542 321223321 1 2689999999998753
No 296
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=70.80 E-value=16 Score=39.06 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-----CeEEecCEEEEeeChhhHHHh
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----KETYSAGAVVLAVGISTLQEL 123 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-----g~~~~ad~VV~a~p~~~~~~L 123 (343)
+...+.+.+++.|++|++++.|++|.-+ +++.+|++. ++++++|.|+++.+...-..|
T Consensus 353 ~~~~l~~~L~~~GV~i~~~~~v~~i~g~---~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L 415 (985)
T TIGR01372 353 VSPEARAEARELGIEVLTGHVVAATEGG---KRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHL 415 (985)
T ss_pred hhHHHHHHHHHcCCEEEcCCeEEEEecC---CcEEEEEEEecCCceEEEECCEEEEcCCcCchhHH
Confidence 4556777889999999999999999743 345555542 357899999999986543334
No 297
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=70.33 E-value=31 Score=33.76 Aligned_cols=140 Identities=11% Similarity=0.031 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeChhhHH-HhhhhhcccCchhHHhh
Q 019274 66 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKV 138 (343)
Q Consensus 66 ~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~~~~~-~Ll~~~~~~~~~~~~~~ 138 (343)
+++=-+-.+|+.+.-..+|.++..+++ |+|.|+++. |+ .++|..||-|++|..-. +-..+...
T Consensus 229 ~vAlTA~r~GA~v~Nh~ev~~Llkd~~-~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~--------- 298 (680)
T KOG0042|consen 229 AVALTAARNGATVLNHVEVVSLLKDKD-GKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDDEDA--------- 298 (680)
T ss_pred HHHHHHHhcchhhhhHHHHHHHhhCCC-CceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhccccc---------
Confidence 333334567999999999999998887 777676653 54 56899999999885422 22222110
Q ss_pred ccCcccceEEEEEEeccCCCCCCCcceeecCCCCccceEeeccccccccCCCCCeEEEEEeeCC-CCCCCCCHHHHHHHH
Q 019274 139 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHA-NELMPLKDDQVVAKA 217 (343)
Q Consensus 139 ~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~e~~~~~ 217 (343)
+.+ ..+...+|+.+.+-.-++ ..+ ++......+..+|-+ | |. +.++...+=.+. ......+.|+-++.+
T Consensus 299 ~~i-~~pSsGvHIVlP~yY~P~-~mG-lldP~TsDgRViFfl----P-Wq--g~TIaGTTD~pt~v~~~P~PtE~dIqfI 368 (680)
T KOG0042|consen 299 KPI-CVPSSGVHIVLPGYYCPE-NMG-LLDPKTSDGRVIFFL----P-WQ--GKTIAGTTDIPTSVTHSPTPTEDDIQFI 368 (680)
T ss_pred Cce-eccCCceeEEcccccCCc-ccc-cccCCCCCCcEEEEe----c-cC--CceeeccCCCCCCCCCCCCCCHHHHHHH
Confidence 000 234445677666654322 112 211111122223321 1 21 333322221121 112234567778889
Q ss_pred HHHHhhhc
Q 019274 218 VSYLSKCI 225 (343)
Q Consensus 218 ~~~L~~~~ 225 (343)
++++..++
T Consensus 369 L~ev~~yl 376 (680)
T KOG0042|consen 369 LKEVQHYL 376 (680)
T ss_pred HHHHHHhh
Confidence 99999886
No 298
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=69.76 E-value=7.3 Score=39.26 Aligned_cols=55 Identities=20% Similarity=0.179 Sum_probs=43.3
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~~~ 120 (343)
+.++-.--+..+++|++++++.+|..|..++ | .|.++ |.++.+|.+|+|++....
T Consensus 59 edi~l~~~dwy~~~~i~L~~~~~v~~idr~~---k--~V~t~~g~~~~YDkLilATGS~pf 114 (793)
T COG1251 59 EDISLNRNDWYEENGITLYTGEKVIQIDRAN---K--VVTTDAGRTVSYDKLIIATGSYPF 114 (793)
T ss_pred HHHhccchhhHHHcCcEEEcCCeeEEeccCc---c--eEEccCCcEeecceeEEecCcccc
Confidence 3355455567889999999999999998875 2 35565 778999999999988665
No 299
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=69.50 E-value=7.1 Score=36.54 Aligned_cols=39 Identities=23% Similarity=0.406 Sum_probs=28.7
Q ss_pred CCCCeEEeeccccCCCCC--ccchHHHHHHHHHHHHHHHHh
Q 019274 262 SFPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 262 ~~~~L~laGd~~~~g~~~--~~~ega~~Sg~~aA~~il~~~ 300 (343)
.+|||||||.-+...-+. =.+.-|+.||..|++.+...+
T Consensus 335 ~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 335 ARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred cCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 589999999887521111 147789999999999887644
No 300
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=68.77 E-value=14 Score=35.42 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=33.8
Q ss_pred HHHcCCeEEcceeeeEEEecCCCCeEEEEEEC--Ce--EEecCEEEEeeChhh
Q 019274 71 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 71 l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g~--~~~ad~VV~a~p~~~ 119 (343)
.++.|++++++++|++|..++ ..| .+... ++ ++++|++|+|++...
T Consensus 68 ~~~~~i~v~~~~~V~~Id~~~--~~v-~~~~~~~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 68 YDRKQITVKTYHEVIAINDER--QTV-TVLNRKTNEQFEESYDKLILSPGASA 117 (438)
T ss_pred HHhCCCEEEeCCEEEEEECCC--CEE-EEEECCCCcEEeeecCEEEECCCCCC
Confidence 355799999999999998776 443 34432 22 468999999999754
No 301
>PRK10262 thioredoxin reductase; Provisional
Probab=68.75 E-value=20 Score=32.52 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 119 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~ 119 (343)
+.+.+.+.+...+.+++.+ .|++|...+ +. +.+..+.+.+.+|+||+|++...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~-~v~~v~~~~--~~-~~v~~~~~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 65 LMERMHEHATKFETEIIFD-HINKVDLQN--RP-FRLTGDSGEYTCDALIIATGASA 117 (321)
T ss_pred HHHHHHHHHHHCCCEEEee-EEEEEEecC--Ce-EEEEecCCEEEECEEEECCCCCC
Confidence 5667777777778888776 577887765 43 34554445789999999999864
No 302
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=68.10 E-value=1.1e+02 Score=28.88 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHc-CCeEEcceeeeEEEecCCCCeEEEEEEC---CeEEe--cCE-EEEeeChhhHH
Q 019274 62 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG---KETYS--AGA-VVLAVGISTLQ 121 (343)
Q Consensus 62 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~~~~--ad~-VV~a~p~~~~~ 121 (343)
++++.|-+.+-+. .+++.- -.|.++..++ |-|+||+++ |++.+ |-- |||.-=...+.
T Consensus 148 RFvq~lR~ka~slpNV~~ee-GtV~sLlee~--gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlR 211 (509)
T KOG1298|consen 148 RFVQRLRKKAASLPNVRLEE-GTVKSLLEEE--GVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLR 211 (509)
T ss_pred HHHHHHHHHHhcCCCeEEee-eeHHHHHhcc--CeEEeEEEecCCCceEEEecceEEEecchhHHHH
Confidence 5888888876543 333333 3567776666 778899885 44444 443 44443333344
No 303
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=67.78 E-value=7.8 Score=39.23 Aligned_cols=46 Identities=17% Similarity=0.144 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeE-EEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTD-FIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 120 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~-I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~ 120 (343)
+++...+.+++.|+++++++.|.. +..+. ....+|.||+|++....
T Consensus 379 ~~~~~~~~~~~~Gv~~~~~~~v~~~i~~~~------------~~~~~DavilAtGa~~~ 425 (654)
T PRK12769 379 LLARRREIFSAMGIEFELNCEVGKDISLES------------LLEDYDAVFVGVGTYRS 425 (654)
T ss_pred HHHHHHHHHHHCCeEEECCCEeCCcCCHHH------------HHhcCCEEEEeCCCCCC
Confidence 445556667888999999987631 11111 11359999999997643
No 304
>PLN02785 Protein HOTHEAD
Probab=67.45 E-value=13 Score=37.08 Aligned_cols=59 Identities=10% Similarity=0.173 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCeEEcceeeeEEEecCCC--CeEEEEEEC---CeEE-------ecCEEEEeeChhhHHHhh
Q 019274 66 PWMDSMRTRGCEFLDGRRVTDFIYDEER--CCISDVVCG---KETY-------SAGAVVLAVGISTLQELI 124 (343)
Q Consensus 66 ~l~~~l~~~G~~i~~~~~V~~I~~~~~~--g~v~~V~~~---g~~~-------~ad~VV~a~p~~~~~~Ll 124 (343)
.+....+..+.+|++++.|++|..++.+ +++++|+.. |... ..+.||++++.-.+.+||
T Consensus 225 ~l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL 295 (587)
T PLN02785 225 ELLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQML 295 (587)
T ss_pred HHHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHH
Confidence 3444444567899999999999987521 278899872 4322 236799999886665543
No 305
>PRK12831 putative oxidoreductase; Provisional
Probab=67.44 E-value=7.7 Score=37.47 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC--eEEecCEEEEeeChh
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGIS 118 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g--~~~~ad~VV~a~p~~ 118 (343)
+.+...+.+++.|+++++++.|.+ . +..++ +.+.+|+||+|++..
T Consensus 193 ~~~~~~~~~~~~gv~i~~~~~v~~--------~---v~~~~~~~~~~~d~viiAtGa~ 239 (464)
T PRK12831 193 VVKKEIENIKKLGVKIETNVVVGK--------T---VTIDELLEEEGFDAVFIGSGAG 239 (464)
T ss_pred HHHHHHHHHHHcCCEEEcCCEECC--------c---CCHHHHHhccCCCEEEEeCCCC
Confidence 556666778889999999986631 1 11111 235699999999974
No 306
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=67.37 E-value=15 Score=39.24 Aligned_cols=49 Identities=14% Similarity=0.256 Sum_probs=37.1
Q ss_pred HHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC------------------C--eEEecCEEEEeeChh
Q 019274 69 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------------K--ETYSAGAVVLAVGIS 118 (343)
Q Consensus 69 ~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~------------------g--~~~~ad~VV~a~p~~ 118 (343)
+.+++.|++|++++.+.+|..+++ |+|.+|++. | .++++|.||+|++..
T Consensus 617 ~~a~eeGI~~~~~~~p~~i~~~~~-G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~ 685 (1006)
T PRK12775 617 RHAKEEGIDFFFLHSPVEIYVDAE-GSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTK 685 (1006)
T ss_pred HHHHhCCCEEEecCCcEEEEeCCC-CeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcC
Confidence 456778999999999999976543 777766431 1 258999999999864
No 307
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=65.89 E-value=9.2 Score=36.99 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 119 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~ 119 (343)
+++...+.+++.|+++++++.|.. .... . .....+|+||+|++...
T Consensus 195 ~~~~~~~~~~~~gv~~~~~~~v~~-~~~~--~--------~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 195 VIDRRIELMEAEGIEFRTNVEVGK-DITA--E--------ELLAEYDAVFLGTGAYK 240 (471)
T ss_pred HHHHHHHHHHhCCcEEEeCCEECC-cCCH--H--------HHHhhCCEEEEecCCCC
Confidence 455566677888999999987642 1111 0 01236899999998863
No 308
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=65.55 E-value=11 Score=37.13 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=41.7
Q ss_pred hHHHHHHH-HHcCCeEEcceeeeEEEecCCCCeEEEEEEC--C----e-EEecCEEEEeeChhhHHHhh
Q 019274 64 FEPWMDSM-RTRGCEFLDGRRVTDFIYDEERCCISDVVCG--K----E-TYSAGAVVLAVGISTLQELI 124 (343)
Q Consensus 64 ~~~l~~~l-~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~--g----~-~~~ad~VV~a~p~~~~~~Ll 124 (343)
..++.+.+ +..+.+|.+++.|++|..++ +++++|++. + + .+.++.||++.+.-...+||
T Consensus 205 ~~a~l~~a~~~~nl~v~t~a~v~ri~~~~--~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL 271 (542)
T COG2303 205 ARAYLKPALKRPNLTLLTGARVRRILLEG--DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLL 271 (542)
T ss_pred hhhcchhHhcCCceEEecCCEEEEEEEEC--CeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHH
Confidence 33444443 44458999999999999999 777777663 2 2 24678999999887766654
No 309
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=65.38 E-value=4.5 Score=36.80 Aligned_cols=74 Identities=18% Similarity=0.172 Sum_probs=37.7
Q ss_pred HHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCCCC-CCCCCCeEEeeccccCCCCCccchHH---HHHHHHHH
Q 019274 218 VSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG-FTSFPNLFMAGDWITTRHGSWSQERS---YVTGLEAA 293 (343)
Q Consensus 218 ~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p~~-~~~~~~L~laGd~~~~g~~~~~~ega---~~Sg~~aA 293 (343)
...+-+++|++..++++..-+. ++.++--.|.... +.. -..-+||||||.-+.. - +.++.| +..|.+||
T Consensus 292 QkrVf~mIPgLeNAefvRyGvm--HRNtfinSP~lL~--~tl~lk~~p~l~fAGQitG~--E-GYveSaA~Gllag~naa 364 (439)
T COG1206 292 QKRVFRMIPGLENAEFVRYGVM--HRNTFINSPKLLD--PTLQLKKRPNLFFAGQITGV--E-GYVESAASGLLAGINAA 364 (439)
T ss_pred hhhhhhhcCCcchhhhhhccce--ecccccCChhhhh--HHhhcccCCCcEEeeeeecc--h-hhhHHhhhhHHHhhHHH
Confidence 3456678999987655433232 2222222222111 111 1245899999998753 2 344433 34555666
Q ss_pred HHHHH
Q 019274 294 NRVVD 298 (343)
Q Consensus 294 ~~il~ 298 (343)
...++
T Consensus 365 ~~~~g 369 (439)
T COG1206 365 RLALG 369 (439)
T ss_pred HHhcC
Confidence 55544
No 310
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=65.19 E-value=25 Score=33.00 Aligned_cols=62 Identities=10% Similarity=0.009 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEE--CCe--EEecCEEEEeeChhhH-HHhhh
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGISTL-QELIK 125 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~--~g~--~~~ad~VV~a~p~~~~-~~Ll~ 125 (343)
.+.+.|.+.+.+.|+++++++.+.++...++ .. ..|+. +|+ +++||.||-|=+..+. .+.++
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~-~~-~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~ 170 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAG-DR-PYVTFERDGERHRLDCDFIAGCDGFHGVSRASIP 170 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCC-Cc-cEEEEEECCeEEEEEeCEEEECCCCchhhHHhcC
Confidence 4567788888888999999999888865321 22 23444 454 6899999999998775 34443
No 311
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=64.78 E-value=9 Score=36.79 Aligned_cols=39 Identities=33% Similarity=0.441 Sum_probs=30.6
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHh
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~ 300 (343)
.+|.++|+|.+||-+. + + ..+..|+..|+.||..|...+
T Consensus 411 ~~Ts~~~VfA~GD~~~-g-~-~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 411 QRTSIPGVFAGGDIIL-G-A-ATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CccCCCCEEEecCCCC-C-c-HHHHHHHHHHHHHHHHHHhhC
Confidence 3467899999999974 3 2 356779999999999987653
No 312
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=64.71 E-value=17 Score=35.52 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=40.0
Q ss_pred HHHHHHHhhhcccCCCCceeeeEEEecCCCcc-ccCCCCCCCCCCCCC-CCCCeEEeeccccCCCCCccchHHH----HH
Q 019274 215 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLT-HFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSY----VT 288 (343)
Q Consensus 215 ~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~-~~~~g~~~~~p~~~~-~~~~L~laGd~~~~g~~~~~~ega~----~S 288 (343)
..+..++-+-+|+++.++ +.|+..++. -|. .-....|..++ .++||||||.--. -. +.|.|. +.
T Consensus 315 ~dVQ~~~irsipGlEna~-----i~rpgYAIEYD~v-~p~qL~~tLEtK~I~GLf~AGQING--Tt--GYEEAAaQGliA 384 (621)
T COG0445 315 EDVQEQIIRSIPGLENAE-----ILRPGYAIEYDYV-DPRQLKPTLETKKIKGLFFAGQING--TT--GYEEAAAQGLIA 384 (621)
T ss_pred HHHHHHHHHhCcccccce-----eeccceeeeeccc-ChhhcccchhhceecceEEcccccC--Cc--hhHHHHhhhHHH
Confidence 456667777889987533 344433331 111 11112345554 5899999998733 22 234444 56
Q ss_pred HHHHHHHHHH
Q 019274 289 GLEAANRVVD 298 (343)
Q Consensus 289 g~~aA~~il~ 298 (343)
|.+||..+..
T Consensus 385 GiNAal~~~~ 394 (621)
T COG0445 385 GINAALKVQG 394 (621)
T ss_pred HHHHHHHhcC
Confidence 6666655544
No 313
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=64.25 E-value=3.6 Score=37.24 Aligned_cols=100 Identities=9% Similarity=-0.007 Sum_probs=64.7
Q ss_pred CCHHHHHHhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhcCC--CceeEeecCCCchhhhHHHHHHHHHcCCeEEccee
Q 019274 6 CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK--NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRR 83 (343)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~--~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~ 83 (343)
+++.+++.++.++....|+.+|+++++.....+=.++...+.- .---+.|++| +..+.+ +.++....+|++||.
T Consensus 142 vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~G-YT~~~~---kMl~hp~I~V~Lntd 217 (374)
T COG0562 142 VGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDG-YTAMFE---KMLDHPNIDVRLNTD 217 (374)
T ss_pred HHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCcccc-HHHHHH---HHhcCCCceEEecCc
Confidence 5788999999999999999999999987654332111111100 0011468888 344444 445556789999988
Q ss_pred eeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHH
Q 019274 84 VTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 84 V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~ 121 (343)
-..+.... . .+.+..||.+-|.+..-
T Consensus 218 ~~~~~~~~--~----------~~~~~~VvytG~iD~~F 243 (374)
T COG0562 218 FFDVKDQL--R----------AIPFAPVVYTGPIDAYF 243 (374)
T ss_pred HHHHhhhh--c----------ccCCCceEEecchHhhh
Confidence 77765433 1 13466888888887654
No 314
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=63.78 E-value=19 Score=34.43 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhh
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 119 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~ 119 (343)
+.+.+.+.+++.|++++.+ +|+.+. . ..+ .|..+|+++++|+||+|++...
T Consensus 92 ~~~~~~~~l~~~gV~~~~g-~~~~v~--~--~~v-~v~~~g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 92 LSGLYKRLLANAGVELLEG-RARLVG--P--NTV-EVLQDGTTYTAKKILIAVGGRP 142 (446)
T ss_pred HHHHHHHHHHhCCcEEEEE-EEEEec--C--CEE-EEecCCeEEEcCEEEEecCCcC
Confidence 4555666677889999877 565553 2 332 3434567899999999999753
No 315
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=63.75 E-value=12 Score=36.11 Aligned_cols=48 Identities=21% Similarity=0.179 Sum_probs=32.5
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeE-EEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTD-FIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 120 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~-I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~ 120 (343)
..+.+...+.+++.|+++++|+.|.+ +..+ +....+|+||+|++....
T Consensus 191 ~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~------------~~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 191 KAVLSRRREIFTAMGIEFHLNCEVGRDISLD------------DLLEDYDAVFLGVGTYRS 239 (467)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEeCCccCHH------------HHHhcCCEEEEEeCCCCC
Confidence 33555666778889999999988743 1111 112369999999998654
No 316
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=61.40 E-value=17 Score=34.67 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeCh
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 117 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~ 117 (343)
+.....+.+++.|.++++++.|+++.... . .|.++ |+++++++.|+|++.
T Consensus 129 ~a~r~~e~Yke~gIe~~~~t~v~~~D~~~--K---~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 129 LAKRTPEFYKEKGIELILGTSVVKADLAS--K---TLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred ccccChhhHhhcCceEEEcceeEEeeccc--c---EEEeCCCceeecceEEEeecC
Confidence 44455567899999999999999999876 3 35555 789999999999998
No 317
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=61.10 E-value=29 Score=32.61 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=41.7
Q ss_pred CCCchhhhHHHHHHH--HHc-----CCeEEcceeeeEEEecCCCCeEEEEEEC----C--eEEecCEEEEeeChh
Q 019274 57 GTLREKIFEPWMDSM--RTR-----GCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIS 118 (343)
Q Consensus 57 gG~~~~l~~~l~~~l--~~~-----G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g--~~~~ad~VV~a~p~~ 118 (343)
.|++..++..|-+.+ ++. .+.++.++.|.+++-.++ |++ .+.+. | ++++.|.||+||+-.
T Consensus 267 kgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~-g~~-~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 267 KGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGD-GRY-RLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred cccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCC-ceE-EEEEeeccCCCceEEEeeEEEEecccc
Confidence 355555666666543 222 348889999999998886 763 34442 2 478999999999876
No 318
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=60.07 E-value=28 Score=34.55 Aligned_cols=48 Identities=27% Similarity=0.204 Sum_probs=34.0
Q ss_pred HHHHcCCeEEcceeeeEEEecCCCCeEEEEEE-----------------CC--eEEecCEEEEeeChhh
Q 019274 70 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-----------------GK--ETYSAGAVVLAVGIST 119 (343)
Q Consensus 70 ~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~-----------------~g--~~~~ad~VV~a~p~~~ 119 (343)
.+.+.|++|++++.+.+|..+++ +.+ +|++ .| .++++|.||+|++...
T Consensus 314 ~a~~~GVki~~~~~~~~i~~~~~-~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p 380 (564)
T PRK12771 314 EALREGVEINWLRTPVEIEGDEN-GAT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDI 380 (564)
T ss_pred HHHHcCCEEEecCCcEEEEcCCC-CEE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCC
Confidence 34567999999999999976553 432 4322 12 3689999999998643
No 319
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=60.01 E-value=14 Score=35.56 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=32.3
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 118 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~ 118 (343)
..+.+...+.+++.|+++++++.|... +.+++....+|+||+|++..
T Consensus 190 ~~~~~~~~~~l~~~gv~~~~~~~v~~~-----------v~~~~~~~~~d~vvlAtGa~ 236 (457)
T PRK11749 190 KDIVDREVERLLKLGVEIRTNTEVGRD-----------ITLDELRAGYDAVFIGTGAG 236 (457)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEECCc-----------cCHHHHHhhCCEEEEccCCC
Confidence 346677777788889999999876321 11111125699999999985
No 320
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=59.07 E-value=13 Score=36.71 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=30.3
Q ss_pred CCCCCCCeEEeeccccCCCC-----CccchHHHHHHHHHHHHHHHHh
Q 019274 259 GFTSFPNLFMAGDWITTRHG-----SWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~-----~~~~ega~~Sg~~aA~~il~~~ 300 (343)
.++++||||-||+-+..-|+ +.++-.|+.+|+.|++.+.+..
T Consensus 357 ~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 357 CETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred CcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 34789999999997532122 1345678899999999987764
No 321
>PRK12839 hypothetical protein; Provisional
Probab=57.99 E-value=13 Score=37.04 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=31.0
Q ss_pred CCCCCeEEeecccc----CCCC--CccchHHHHHHHHHHHHHHHHhC
Q 019274 261 TSFPNLFMAGDWIT----TRHG--SWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 261 ~~~~~L~laGd~~~----~g~~--~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
.+|+|||-||..+. ..++ +.++-.|+.+|+.|++.+.+..+
T Consensus 523 ~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~~ 569 (572)
T PRK12839 523 TPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGSTG 569 (572)
T ss_pred CCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhccc
Confidence 48999999998543 1232 14677889999999999987665
No 322
>PRK13984 putative oxidoreductase; Provisional
Probab=57.58 E-value=15 Score=36.81 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChh
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 118 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~ 118 (343)
.+++...+.+++.|+++++++.|..- ..- +.....+|+||+|++..
T Consensus 334 ~~~~~~~~~~~~~gv~~~~~~~v~~~-~~~----------~~~~~~yD~vilAtGa~ 379 (604)
T PRK13984 334 EALDKDIAFIEALGVKIHLNTRVGKD-IPL----------EELREKHDAVFLSTGFT 379 (604)
T ss_pred HHHHHHHHHHHHCCcEEECCCEeCCc-CCH----------HHHHhcCCEEEEEcCcC
Confidence 34455566788889999999887421 100 00123699999999975
No 323
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=57.21 E-value=17 Score=38.72 Aligned_cols=40 Identities=25% Similarity=0.236 Sum_probs=32.3
Q ss_pred CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274 260 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 302 (343)
Q Consensus 260 ~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~ 302 (343)
++..+|+|.+||-.. | | .++..|+..|+.||..|++..+.
T Consensus 802 ~Ts~pgVFAaGD~a~-G-P-~tVv~AIaqGr~AA~nIl~~~~~ 841 (1012)
T TIGR03315 802 ETNITNVFVIGDANR-G-P-ATIVEAIADGRKAANAILSREGL 841 (1012)
T ss_pred ccCCCCEEEEeCcCC-C-c-cHHHHHHHHHHHHHHHHhccccC
Confidence 467899999999864 2 4 47788999999999999876543
No 324
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=56.59 E-value=15 Score=35.69 Aligned_cols=40 Identities=33% Similarity=0.257 Sum_probs=31.9
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
.+|..+|+|.+||-+. +. ..+..|+..|+.||..|.+.+.
T Consensus 440 ~~Ts~~gVfAaGD~~~-g~--~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 440 YSTSIPGVFAAGDCRR-GQ--SLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred ceECCCCEEEeeccCC-Cc--HHHHHHHHHHHHHHHHHHHHHh
Confidence 3467899999999864 32 3556789999999999988875
No 325
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=56.52 E-value=1.4e+02 Score=26.61 Aligned_cols=43 Identities=12% Similarity=-0.011 Sum_probs=28.5
Q ss_pred CCCCCCCCCeEEeeccccCCCCC--ccchHHHHHHHHHHHHHHHH
Q 019274 257 MRGFTSFPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDY 299 (343)
Q Consensus 257 p~~~~~~~~L~laGd~~~~g~~~--~~~ega~~Sg~~aA~~il~~ 299 (343)
|......+|+.+.||..+.-||. ++|.-|...+...++.+...
T Consensus 123 p~~~~~~~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~ 167 (276)
T PF08491_consen 123 PASPNWKPGVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPI 167 (276)
T ss_pred CCCCCCCCCEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhh
Confidence 33334558999999999877774 55665666666655555443
No 326
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=56.38 E-value=33 Score=32.89 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=29.1
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
.+|.++|+|.+||.+. +. ....-|...|+.+|+.|+.
T Consensus 291 ~~T~~p~IyAiGD~~~-~~--~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 291 QNTNVPGIYALGDVVG-KV--ELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred CcCCCCCEEEEEecCC-Cc--ccHHHHHHHHHHHHHHHhc
Confidence 3467899999999874 33 3566789999999999974
No 327
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=55.74 E-value=16 Score=35.54 Aligned_cols=43 Identities=33% Similarity=0.383 Sum_probs=31.0
Q ss_pred CCCCCCCCeEEeeccccC-CCC-----CccchHHHHHHHHHHHHHHHHh
Q 019274 258 RGFTSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 258 ~~~~~~~~L~laGd~~~~-g~~-----~~~~ega~~Sg~~aA~~il~~~ 300 (343)
..++++||||-||+...+ -|+ +.++-.|+.+|+.|++.+.+..
T Consensus 341 ~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 389 (488)
T TIGR00551 341 HGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRP 389 (488)
T ss_pred CCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 345789999999997532 222 1356778899999999987653
No 328
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=54.87 E-value=18 Score=38.35 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=34.3
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCCC
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDG 303 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~~ 303 (343)
.+|..+|+|.+||-+. |. ..+.-|+..|+.||..|.+.++..
T Consensus 588 ~~Ts~pgVFAaGD~~~-G~--~~vv~Ai~eGr~AA~~I~~~L~~~ 629 (944)
T PRK12779 588 QRTSIKGVYSGGDAAR-GG--STAIRAAGDGQAAAKEIVGEIPFT 629 (944)
T ss_pred CccCCCCEEEEEcCCC-Ch--HHHHHHHHHHHHHHHHHHHHhccc
Confidence 3467899999999975 32 367789999999999999988753
No 329
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=54.85 E-value=17 Score=36.33 Aligned_cols=42 Identities=26% Similarity=0.260 Sum_probs=30.4
Q ss_pred CCCCCCCeEEeeccccCC-CC-----CccchHHHHHHHHHHHHHHHHh
Q 019274 259 GFTSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g-~~-----~~~~ega~~Sg~~aA~~il~~~ 300 (343)
.++++||||.||+-...| |+ +.++-.|+.+|+.|++.+.+..
T Consensus 367 ~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 414 (582)
T PRK09231 367 CETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERA 414 (582)
T ss_pred CccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhh
Confidence 347899999999864322 22 1356778899999999987654
No 330
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=54.55 E-value=16 Score=36.90 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeE-EEecCCCCeEEEEEECCeEEecCEEEEeeChhhH
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTD-FIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 120 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~-I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~ 120 (343)
.+++...+.+++.|+++++++.|.. +.. .+....+|+||++++....
T Consensus 361 ~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~------------~~l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 361 TVLSQRREIFTAMGIDFHLNCEIGRDITF------------SDLTSEYDAVFIGVGTYGM 408 (639)
T ss_pred HHHHHHHHHHHHCCeEEEcCCccCCcCCH------------HHHHhcCCEEEEeCCCCCC
Confidence 3445556677888999999987632 111 1112358999999998543
No 331
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=54.54 E-value=38 Score=33.98 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=30.4
Q ss_pred CCCCCCCCeEEeeccccCCCC-----CccchHHHHHHHHHHHHHHHHh
Q 019274 258 RGFTSFPNLFMAGDWITTRHG-----SWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 258 ~~~~~~~~L~laGd~~~~g~~-----~~~~ega~~Sg~~aA~~il~~~ 300 (343)
..+|.++|||.||+....-|+ +.++-.|+..|+.|++.+....
T Consensus 378 ~~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~ 425 (603)
T TIGR01811 378 DQMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNY 425 (603)
T ss_pred CCcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999996432232 1356678889999998887653
No 332
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=54.12 E-value=18 Score=38.71 Aligned_cols=42 Identities=31% Similarity=0.437 Sum_probs=34.3
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCCC
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDG 303 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~~ 303 (343)
.+|.++|+|.+||-+. | + .++..|+..|+.||..|...+.-+
T Consensus 716 ~~Ts~pgVFAaGDv~~-G-~-~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVT-G-G-ATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred cCCCCCCEEEecCcCC-C-c-cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3578899999999875 3 3 467789999999999999988743
No 333
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=52.78 E-value=18 Score=35.94 Aligned_cols=41 Identities=27% Similarity=0.307 Sum_probs=30.2
Q ss_pred CCCCCeEEeeccccC-CCCC-----ccchHHHHHHHHHHHHHHHHhC
Q 019274 261 TSFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 261 ~~~~~L~laGd~~~~-g~~~-----~~~ega~~Sg~~aA~~il~~~~ 301 (343)
+++||||.||+-+.+ .|+. .++-+|+.+|++|++.+.+...
T Consensus 351 t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~~ 397 (565)
T TIGR01816 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAK 397 (565)
T ss_pred CccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 579999999997642 2331 2566788999999999876643
No 334
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=52.54 E-value=25 Score=32.47 Aligned_cols=39 Identities=31% Similarity=0.433 Sum_probs=30.4
Q ss_pred CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274 260 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 260 ~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
++..+|+|.+||-+. + + ..+..|+..|..||..|...+.
T Consensus 312 ~t~~~~vyaiGD~~~-~-~-~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 312 MTSREGVFAAGDVVT-G-P-SKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred ccCCCCEEEEccccc-C-c-chHHHHHHHHHHHHHHHHHHHh
Confidence 356799999999864 2 3 3567789999999999987653
No 335
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=52.50 E-value=18 Score=36.00 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=30.0
Q ss_pred CCCCCeEEeeccccC----CCC--CccchHHHHHHHHHHHHHHHHhC
Q 019274 261 TSFPNLFMAGDWITT----RHG--SWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 261 ~~~~~L~laGd~~~~----g~~--~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
.+|||||-||..+.. .|+ +.++-.|+.+|+.|++.+.+...
T Consensus 522 ~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 568 (574)
T PRK12842 522 TPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAG 568 (574)
T ss_pred CCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhc
Confidence 589999999976431 232 13577789999999999977643
No 336
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=52.29 E-value=21 Score=35.38 Aligned_cols=40 Identities=30% Similarity=0.321 Sum_probs=30.1
Q ss_pred CCCCCeEEeeccccC-CCC-----CccchHHHHHHHHHHHHHHHHh
Q 019274 261 TSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 261 ~~~~~L~laGd~~~~-g~~-----~~~~ega~~Sg~~aA~~il~~~ 300 (343)
+++||||-||+-..+ .|+ +.++-.|+.+|+.|++.+.+..
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~ 402 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYA 402 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 789999999997542 232 1356778899999999987654
No 337
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.16 E-value=37 Score=32.67 Aligned_cols=56 Identities=16% Similarity=-0.008 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHcCC--eEEcceeeeEEEecCCCCeEEEEEEC---C--eEEecCEEEEeeChhh
Q 019274 62 KIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIST 119 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~--~i~~~~~V~~I~~~~~~g~v~~V~~~---g--~~~~ad~VV~a~p~~~ 119 (343)
.+++.|..++++.+. .|+++++|.++...++ |+ |.|.+. + ++..+|.||+|++-+.
T Consensus 91 e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gk-W~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 91 EVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GK-WRVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred HHHHHHHHHHHhcChhhheEecccEEEEeeccC-Cc-eeEEEecCCcceeEEEeeEEEEcccCcC
Confidence 588889999888775 7899998888877653 44 777774 2 3678999999999884
No 338
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=51.89 E-value=20 Score=37.00 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=31.9
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECC-eEEecCEEEEeeChh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGIS 118 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g-~~~~ad~VV~a~p~~ 118 (343)
..+++...+.+++.|+++++++.|. .. |++++ ....+|+||+|++..
T Consensus 481 ~~~~~~~~~~l~~~gv~~~~~~~v~--------~~---v~~~~l~~~~ydavvlAtGa~ 528 (752)
T PRK12778 481 KKIVDVEIENLKKLGVKFETDVIVG--------KT---ITIEELEEEGFKGIFIASGAG 528 (752)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEC--------Cc---CCHHHHhhcCCCEEEEeCCCC
Confidence 3456666677888999999997652 11 22221 245699999999984
No 339
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=51.63 E-value=19 Score=35.73 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=32.7
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
..+.++|+|.+||-+. | + .++..|+..|+.||..|.+.+.
T Consensus 405 ~~ts~~~Vfa~GD~~~-g-~-~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 405 MMTGRPGVFAGGDMVP-G-P-RTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred ccCCCCCEEeccCcCC-C-c-hHHHHHHHHHHHHHHHHHHHHc
Confidence 3467899999999865 3 3 4677899999999999988875
No 340
>PLN02546 glutathione reductase
Probab=51.53 E-value=36 Score=33.81 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=29.0
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
.+|.++|+|.+||-+. +. ....-|...|..+|+.|+.
T Consensus 376 l~Ts~p~IYAaGDv~~-~~--~l~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 376 SRTSVPSIWAVGDVTD-RI--NLTPVALMEGGALAKTLFG 412 (558)
T ss_pred ceeCCCCEEEeeccCC-Cc--ccHHHHHHHHHHHHHHHcC
Confidence 4567899999999975 33 2456688899999999875
No 341
>PRK07121 hypothetical protein; Validated
Probab=51.38 E-value=19 Score=34.93 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=29.0
Q ss_pred CCCCCeEEeeccccC----CC-CCccchHHHHHHHHHHHHHHHHh
Q 019274 261 TSFPNLFMAGDWITT----RH-GSWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 261 ~~~~~L~laGd~~~~----g~-~~~~~ega~~Sg~~aA~~il~~~ 300 (343)
.+|+|||.||.-+.. .+ ++.++-.|+.+|+.|++.+.+..
T Consensus 447 ~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~~ 491 (492)
T PRK07121 447 APIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAARA 491 (492)
T ss_pred CCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhhc
Confidence 479999999976431 11 12457778999999999987653
No 342
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=51.14 E-value=19 Score=34.31 Aligned_cols=39 Identities=21% Similarity=0.070 Sum_probs=27.5
Q ss_pred CCCCCeEEeeccccC---C--CC-CccchHHHHHHHHHHHHHHHH
Q 019274 261 TSFPNLFMAGDWITT---R--HG-SWSQERSYVTGLEAANRVVDY 299 (343)
Q Consensus 261 ~~~~~L~laGd~~~~---g--~~-~~~~ega~~Sg~~aA~~il~~ 299 (343)
.+|||||-||..+.. | +. +.++-.|+.+|+.|++.+.+.
T Consensus 385 ~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 385 VAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 489999999975421 1 11 135667889999999988654
No 343
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=50.99 E-value=24 Score=35.22 Aligned_cols=42 Identities=31% Similarity=0.481 Sum_probs=30.1
Q ss_pred CCCCCCCeEEeeccccCCCCC-----ccchHHHHHHHHHHHHHHHHh
Q 019274 259 GFTSFPNLFMAGDWITTRHGS-----WSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~-----~~~ega~~Sg~~aA~~il~~~ 300 (343)
..+++||||.||+-+..-|+. .++-.|+..|+.|++.+.+..
T Consensus 364 ~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~ 410 (589)
T PRK08641 364 QMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYI 410 (589)
T ss_pred CCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 457899999999975322331 346678889999998887654
No 344
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=50.97 E-value=53 Score=31.67 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=28.9
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
.+|..+|+|.+||-+. .++ ...-|...|..||..++.
T Consensus 300 ~~Ts~~~IyA~GD~~~-~~~--l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 300 SRTSVPGIYAAGDCTG-VLP--LASVAAMQGRIAMYHALG 336 (466)
T ss_pred cccCCCCEEEEeeccC-Ccc--chhHHHHHHHHHHHHHcC
Confidence 4567899999999974 333 456688899999999875
No 345
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=50.95 E-value=22 Score=33.64 Aligned_cols=55 Identities=16% Similarity=0.328 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-------C---------eEEecCEEEEeeCh
Q 019274 62 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K---------ETYSAGAVVLAVGI 117 (343)
Q Consensus 62 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-------g---------~~~~ad~VV~a~p~ 117 (343)
.+++-|.+.+++.|++|+-+..+.++..+.| |.|.+|-+. | -++.|..-|+|-+-
T Consensus 184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~ed-gsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc 254 (621)
T KOG2415|consen 184 QLVRWLGEKAEELGVEIYPGFAASEVLYDED-GSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGC 254 (621)
T ss_pred HHHHHHHHHHHhhCceeccccchhheeEcCC-CcEeeEeeccccccCCCCccccccccceecceeEEEeccc
Confidence 3788899999999999999999999999887 889998773 1 14567777777654
No 346
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=50.87 E-value=40 Score=32.02 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=30.5
Q ss_pred CCCCCeEEeeccccC---CCCCccchHHHHHHHHHHHHHHHHhC
Q 019274 261 TSFPNLFMAGDWITT---RHGSWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 261 ~~~~~L~laGd~~~~---g~~~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
+..+|+|.+||.... ..| .....|...|..+|+.|.+.+.
T Consensus 306 ~~~~~IfAiGD~a~~~~~~~~-~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 306 KPIPNVFALGDCAANEERPLP-TLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred CCCCCEEEEeccccCCCCCCC-CchHHHHHHHHHHHHHHHHHhc
Confidence 468999999998752 123 2445688999999999988864
No 347
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=50.52 E-value=20 Score=33.61 Aligned_cols=38 Identities=18% Similarity=0.463 Sum_probs=27.8
Q ss_pred CCCCeEEeecccc-CCCCC-ccchHHHHHHHHHHHHHHHH
Q 019274 262 SFPNLFMAGDWIT-TRHGS-WSQERSYVTGLEAANRVVDY 299 (343)
Q Consensus 262 ~~~~L~laGd~~~-~g~~~-~~~ega~~Sg~~aA~~il~~ 299 (343)
.+|||||||.-+. .||-+ =.+.-|..||..|++.+...
T Consensus 367 ~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~ 406 (408)
T COG2081 367 KVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAW 406 (408)
T ss_pred cCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhh
Confidence 5899999998764 22221 14677899999999988764
No 348
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=50.18 E-value=39 Score=34.20 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=26.3
Q ss_pred CCCCCCCeEEeeccccCCCCC-----ccchHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGS-----WSQERSYVTGLEAANR 295 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~-----~~~ega~~Sg~~aA~~ 295 (343)
.+|.++|||.||+-..+-|+. .++-+|+..|+.|++.
T Consensus 415 ~~T~i~GLyAaGE~~~g~HGanRL~~nsL~e~lv~G~~ag~~ 456 (640)
T PRK07573 415 LMSTIPGLFVIGEANFSDHGANRLGASALMQGLADGYFVLPY 456 (640)
T ss_pred CccccCCEEECccccccCCCcccccchhHHHHHHHHHHHhHH
Confidence 357899999999975433442 2366788888888765
No 349
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=49.86 E-value=46 Score=30.61 Aligned_cols=55 Identities=27% Similarity=0.429 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHHH---cC-CeEEcceeeeEEEecCCCCeEEEEEEC------------------Ce-EEecCEEEEeeCh
Q 019274 61 EKIFEPWMDSMRT---RG-CEFLDGRRVTDFIYDEERCCISDVVCG------------------KE-TYSAGAVVLAVGI 117 (343)
Q Consensus 61 ~~l~~~l~~~l~~---~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~------------------g~-~~~ad~VV~a~p~ 117 (343)
-.+.+++.+.+++ .| +++++.++|.++...+ |+|++|+-+ |. ++.|..||++.+.
T Consensus 149 Pgvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~--grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGG 226 (552)
T COG3573 149 PGVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTG--GRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGG 226 (552)
T ss_pred cchhhHHHHHHHHHHhCCceEEEeeeeccceEeeC--CeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCC
Confidence 3477777777765 33 6889999999999998 888888431 11 4678888888763
No 350
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=49.73 E-value=27 Score=34.79 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=31.3
Q ss_pred CCCCCCCCeEEeeccccCC-CCC-----ccchHHHHHHHHHHHHHHHHh
Q 019274 258 RGFTSFPNLFMAGDWITTR-HGS-----WSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 258 ~~~~~~~~L~laGd~~~~g-~~~-----~~~ega~~Sg~~aA~~il~~~ 300 (343)
..+|++||||-||+....| |+. .++-+|+..|+.|++.+....
T Consensus 365 ~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~ 413 (580)
T TIGR01176 365 NCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERA 413 (580)
T ss_pred CcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhh
Confidence 3447899999999875323 321 356778899999999987654
No 351
>PRK06175 L-aspartate oxidase; Provisional
Probab=49.68 E-value=18 Score=34.56 Aligned_cols=42 Identities=29% Similarity=0.282 Sum_probs=30.5
Q ss_pred CCCCCCCeEEeeccccC-CCC-----CccchHHHHHHHHHHHHHHHHh
Q 019274 259 GFTSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~-g~~-----~~~~ega~~Sg~~aA~~il~~~ 300 (343)
.++++||||-||.-+.+ -|+ +.++-.++..|++|++.+....
T Consensus 340 ~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 340 SKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred ccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 34789999999997532 222 1346678899999999986644
No 352
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=49.30 E-value=55 Score=34.81 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=33.9
Q ss_pred HHHcCCeEEcceeeeEEEecCCCCeEEEEEE------------------CC--eEEecCEEEEeeChh
Q 019274 71 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC------------------GK--ETYSAGAVVLAVGIS 118 (343)
Q Consensus 71 l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~------------------~g--~~~~ad~VV~a~p~~ 118 (343)
+.+.|++++.++.+.+|..++++++|.++++ .| .+++||.||+|++..
T Consensus 494 a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~ 561 (944)
T PRK12779 494 ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNT 561 (944)
T ss_pred HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcC
Confidence 3467999999999999976532145655432 12 258999999999864
No 353
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=49.28 E-value=22 Score=35.29 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=30.2
Q ss_pred CCCCCeEEeeccccC----CCC--CccchHHHHHHHHHHHHHHHHhC
Q 019274 261 TSFPNLFMAGDWITT----RHG--SWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 261 ~~~~~L~laGd~~~~----g~~--~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
.+|+|||.||..+.. .|+ +.++-.|+.+|+.|++.+.+...
T Consensus 505 ~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~ 551 (557)
T PRK12844 505 SVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARS 551 (557)
T ss_pred CCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccC
Confidence 489999999976531 232 13677889999999999977543
No 354
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=49.08 E-value=23 Score=35.86 Aligned_cols=40 Identities=25% Similarity=0.227 Sum_probs=32.3
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
..|..+|+|.+||-+. + + ..+..|+..|+.||..|.+.+.
T Consensus 462 ~~Ts~pgVfA~GDv~~-g-~-~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 462 LQTSVAGVFAGGDCVT-G-A-DIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred CcCCCCCEEEcCCcCC-C-c-hHHHHHHHHHHHHHHHHHHHHc
Confidence 3467899999999864 3 3 3566789999999999998886
No 355
>PRK06116 glutathione reductase; Validated
Probab=48.20 E-value=27 Score=33.40 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=28.8
Q ss_pred CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 260 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 260 ~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
++.+||+|.+||.+. +. .....|+..|+.||+.|+.
T Consensus 292 ~Ts~~~IyA~GD~~~-~~--~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 292 NTNVPGIYAVGDVTG-RV--ELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CcCCCCEEEEeecCC-Cc--CcHHHHHHHHHHHHHHHhC
Confidence 467899999999864 33 3556789999999999975
No 356
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=47.82 E-value=20 Score=35.44 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=27.7
Q ss_pred CCCCCeEEeecccc------CCC---CCccchHHHHHHHHHHHHHHH
Q 019274 261 TSFPNLFMAGDWIT------TRH---GSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 261 ~~~~~L~laGd~~~------~g~---~~~~~ega~~Sg~~aA~~il~ 298 (343)
.+|||||.||.-.. .++ ++.++-.|+.+|+.|++.+.+
T Consensus 502 ~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 502 TPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred CEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 48999999998863 122 114567789999999998753
No 357
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=47.56 E-value=24 Score=35.31 Aligned_cols=40 Identities=30% Similarity=0.313 Sum_probs=29.9
Q ss_pred CCCCCeEEeeccccC-CCC-----CccchHHHHHHHHHHHHHHHHh
Q 019274 261 TSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 261 ~~~~~L~laGd~~~~-g~~-----~~~~ega~~Sg~~aA~~il~~~ 300 (343)
++|||||.||+-..+ .|+ +.++-.|+..|+.|++.+.+..
T Consensus 383 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 428 (598)
T PRK09078 383 AVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVI 428 (598)
T ss_pred CccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 579999999997542 233 1356778899999999987754
No 358
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=47.31 E-value=20 Score=35.74 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=29.9
Q ss_pred CCCCCeEEeecccc----CCCC--CccchHHHHHHHHHHHHHHHHhC
Q 019274 261 TSFPNLFMAGDWIT----TRHG--SWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 261 ~~~~~L~laGd~~~----~g~~--~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
.+|+|||-||..+. ..++ +.++-.|+.+|+.|++.+.+...
T Consensus 526 ~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 572 (581)
T PRK06134 526 QPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGASG 572 (581)
T ss_pred CCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcCC
Confidence 48999999997432 1232 13567789999999999987654
No 359
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=47.21 E-value=51 Score=32.01 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=30.9
Q ss_pred HHHHHcCCeE-EcceeeeEEEecCCCCeEEEEEE------------------CC--eEEecCEEEEeeCh
Q 019274 69 DSMRTRGCEF-LDGRRVTDFIYDEERCCISDVVC------------------GK--ETYSAGAVVLAVGI 117 (343)
Q Consensus 69 ~~l~~~G~~i-~~~~~V~~I~~~~~~g~v~~V~~------------------~g--~~~~ad~VV~a~p~ 117 (343)
+.++..|+++ ++++.+.+|.-+++ |+|.+|++ .| .++++|.||++++.
T Consensus 344 e~~~~~gv~~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~ 412 (485)
T TIGR01317 344 EAAAHYGRDPREYSILTKEFIGDDE-GKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGF 412 (485)
T ss_pred hhhhhcCccceEEecCcEEEEEcCC-CeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCc
Confidence 3333346544 56888888865433 56766653 11 26899999999985
No 360
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=47.15 E-value=31 Score=34.33 Aligned_cols=41 Identities=32% Similarity=0.361 Sum_probs=30.2
Q ss_pred CCC-CCCeEEeeccccC-CCC-----CccchHHHHHHHHHHHHHHHHh
Q 019274 260 FTS-FPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 260 ~~~-~~~L~laGd~~~~-g~~-----~~~~ega~~Sg~~aA~~il~~~ 300 (343)
++. +||||-||+-..+ -|+ +.++-+|+..|+.|++.+.+.+
T Consensus 356 ~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 403 (566)
T PRK06452 356 RNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFL 403 (566)
T ss_pred CcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 365 9999999997542 233 1357778999999999987654
No 361
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=46.61 E-value=27 Score=34.84 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=29.8
Q ss_pred CCCCCeEEeeccccC----CCCC--ccchHHHHHHHHHHHHHHHHhC
Q 019274 261 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 261 ~~~~~L~laGd~~~~----g~~~--~~~ega~~Sg~~aA~~il~~~~ 301 (343)
.+|+|||.||..... .|++ .++-.|+.+|+.|++.+.+...
T Consensus 525 ~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~ 571 (584)
T PRK12835 525 SVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVA 571 (584)
T ss_pred CCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhh
Confidence 589999999976531 2321 2467789999999999977643
No 362
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=46.60 E-value=22 Score=35.34 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=28.0
Q ss_pred CCCCCeEEeeccccC----CCCC--ccchHHHHHHHHHHHHHHH
Q 019274 261 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 261 ~~~~~L~laGd~~~~----g~~~--~~~ega~~Sg~~aA~~il~ 298 (343)
.+|+|||-||..+.. .|++ .++-.|+.+|+.|++.+.+
T Consensus 520 ~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 520 SVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred CCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 489999999976531 2331 3577788999999998753
No 363
>PLN02852 ferredoxin-NADP+ reductase
Probab=46.52 E-value=25 Score=34.28 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=32.3
Q ss_pred CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCCC
Q 019274 261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDG 303 (343)
Q Consensus 261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~~ 303 (343)
|+++|+|.+||-..+ |.+.+-.++..|..+|+.|+.++..+
T Consensus 384 T~ipGvyAaGDi~~G--p~gvI~t~~~dA~~ta~~i~~d~~~~ 424 (491)
T PLN02852 384 DTEPGLYVVGWLKRG--PTGIIGTNLTCAEETVASIAEDLEQG 424 (491)
T ss_pred cCCCCEEEeeeEecC--CCCeeeecHhhHHHHHHHHHHHHHcC
Confidence 678999999999863 22355667889999999999997654
No 364
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=46.30 E-value=31 Score=36.73 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=32.7
Q ss_pred CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274 260 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 302 (343)
Q Consensus 260 ~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~ 302 (343)
++..+|+|.+||-.. + + .++..|+..|+.||..|++..+.
T Consensus 804 qTs~pgVFAaGD~a~-G-p-~tvv~Ai~qGr~AA~nI~~~~~~ 843 (1019)
T PRK09853 804 ETSLTNVYMIGDVQR-G-P-STIVAAIADARRAADAILSREGI 843 (1019)
T ss_pred ccCCCCEEEEecccc-C-c-hHHHHHHHHHHHHHHHHhhhcCC
Confidence 467899999999864 2 3 46778999999999999987763
No 365
>PRK09077 L-aspartate oxidase; Provisional
Probab=45.97 E-value=30 Score=34.11 Aligned_cols=42 Identities=31% Similarity=0.351 Sum_probs=30.7
Q ss_pred CCCCCCCeEEeecccc-CCCC-----CccchHHHHHHHHHHHHHHHHh
Q 019274 259 GFTSFPNLFMAGDWIT-TRHG-----SWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~-~g~~-----~~~~ega~~Sg~~aA~~il~~~ 300 (343)
.++++||||.||+-.. ..|+ +.++-.|+..|+.|++.+.+..
T Consensus 362 ~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 362 GRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred CccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 4478999999999753 2232 1356778889999999987654
No 366
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=45.36 E-value=25 Score=35.46 Aligned_cols=41 Identities=32% Similarity=0.419 Sum_probs=29.9
Q ss_pred CCCCCCeEEeeccccCCC-----CCccchHHHHHHHHHHHHHHHHh
Q 019274 260 FTSFPNLFMAGDWITTRH-----GSWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 260 ~~~~~~L~laGd~~~~g~-----~~~~~ega~~Sg~~aA~~il~~~ 300 (343)
.++++|||.||+-...-| ++.++-.|+..|+.|++.+....
T Consensus 402 ~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~ 447 (626)
T PRK07803 402 AATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYV 447 (626)
T ss_pred eeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHh
Confidence 468999999998643212 22467778899999998887654
No 367
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=44.97 E-value=31 Score=34.86 Aligned_cols=40 Identities=33% Similarity=0.376 Sum_probs=30.0
Q ss_pred CCCCCeEEeecccc-CCCCC-----ccchHHHHHHHHHHHHHHHHh
Q 019274 261 TSFPNLFMAGDWIT-TRHGS-----WSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 261 ~~~~~L~laGd~~~-~g~~~-----~~~ega~~Sg~~aA~~il~~~ 300 (343)
+++||||-||+-.. .-|+. .++-.|+..|+.|++.+.+..
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~ 466 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIA 466 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 57999999999753 22331 257778999999999987754
No 368
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=44.41 E-value=24 Score=34.93 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=28.5
Q ss_pred CCCCCeEEeeccccC----CCC--CccchHHHHHHHHHHHHHHHH
Q 019274 261 TSFPNLFMAGDWITT----RHG--SWSQERSYVTGLEAANRVVDY 299 (343)
Q Consensus 261 ~~~~~L~laGd~~~~----g~~--~~~~ega~~Sg~~aA~~il~~ 299 (343)
.+|||||-||..+.. .|+ +.++-.|+.+|+.|++.+.++
T Consensus 512 ~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~~ 556 (557)
T PRK07843 512 SVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAAQ 556 (557)
T ss_pred CCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhhc
Confidence 489999999988631 232 124667899999999988653
No 369
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=43.92 E-value=31 Score=34.41 Aligned_cols=40 Identities=30% Similarity=0.375 Sum_probs=29.5
Q ss_pred CCCCCeEEeeccccC-CCCC-----ccchHHHHHHHHHHHHHHHHh
Q 019274 261 TSFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 261 ~~~~~L~laGd~~~~-g~~~-----~~~ega~~Sg~~aA~~il~~~ 300 (343)
+++||||.||+-+.+ .|+. .++-.|+.+|+.|++.+.+..
T Consensus 373 t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 418 (583)
T PRK08205 373 TVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYA 418 (583)
T ss_pred CCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 579999999997542 2331 256778889999999887654
No 370
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=43.79 E-value=35 Score=34.15 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=29.2
Q ss_pred CCCCCeEEeeccccC-CCCC-----ccchHHHHHHHHHHHHHHHHh
Q 019274 261 TSFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 261 ~~~~~L~laGd~~~~-g~~~-----~~~ega~~Sg~~aA~~il~~~ 300 (343)
+++||||-||+-..+ .|+. .++-.|+.+|+.|++.+.+..
T Consensus 378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 423 (588)
T PRK08958 378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESL 423 (588)
T ss_pred CccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 579999999997542 2331 245778899999999887654
No 371
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=43.58 E-value=19 Score=34.11 Aligned_cols=33 Identities=18% Similarity=0.426 Sum_probs=23.2
Q ss_pred CCCCeEEeeccccCCCCC--ccchHHHHHHHHHHH
Q 019274 262 SFPNLFMAGDWITTRHGS--WSQERSYVTGLEAAN 294 (343)
Q Consensus 262 ~~~~L~laGd~~~~g~~~--~~~ega~~Sg~~aA~ 294 (343)
.+|||||||.-+...-+. =.+.-|+.||..|++
T Consensus 374 ~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 374 LVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp SSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 589999999887621111 147889999999985
No 372
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=43.24 E-value=35 Score=33.92 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=29.3
Q ss_pred CCCCCeEEeeccccC-CCC-----CccchHHHHHHHHHHHHHHHHh
Q 019274 261 TSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 261 ~~~~~L~laGd~~~~-g~~-----~~~~ega~~Sg~~aA~~il~~~ 300 (343)
+++||||-||+-..+ .|+ +.++-.|+.+|+.|++.+.+.+
T Consensus 360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 405 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKAL 405 (570)
T ss_pred CccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHH
Confidence 479999999997542 233 1346778899999999887654
No 373
>PRK08275 putative oxidoreductase; Provisional
Probab=42.48 E-value=30 Score=34.29 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=30.6
Q ss_pred CCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHh
Q 019274 258 RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 258 ~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~ 300 (343)
..+|.++|||.||+....++ .++..|+..|..|++.+.+..
T Consensus 364 ~~~t~i~gl~a~Ge~~~~~~--~~~~~~~~~G~~a~~~~~~~~ 404 (554)
T PRK08275 364 KAETTVPGLYAAGDMASVPH--NYMLGAFTYGWFAGENAAEYV 404 (554)
T ss_pred CCccCCCCEEECcccCCchh--HHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999754333 356678889999988887654
No 374
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=42.45 E-value=36 Score=32.48 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=27.4
Q ss_pred CCCCCeEEeeccccCCCCC------ccchHHHHHHHHHHHHHHHHh
Q 019274 261 TSFPNLFMAGDWITTRHGS------WSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 261 ~~~~~L~laGd~~~~g~~~------~~~ega~~Sg~~aA~~il~~~ 300 (343)
+.++|||.+|+-+. |+.- .++ |+.||..||+.|.+..
T Consensus 378 ~~~~nl~a~G~vl~-g~d~~~~~~g~Gv--a~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 378 PVIENLYAAGAVLG-GYDPIREGCGSGV--ALATALHAAEQIAEEA 420 (422)
T ss_pred eeccceEEeeehhc-CCchHHhCCCchh--HHHHHHHHHHHHHHhh
Confidence 34899999999886 3221 233 7889999999998754
No 375
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=42.44 E-value=36 Score=33.91 Aligned_cols=40 Identities=25% Similarity=0.359 Sum_probs=29.8
Q ss_pred CCCCCeEEeeccccC-CCC-----CccchHHHHHHHHHHHHHHHHh
Q 019274 261 TSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 261 ~~~~~L~laGd~~~~-g~~-----~~~~ega~~Sg~~aA~~il~~~ 300 (343)
+++||||-||+-+.+ -|+ +.++-.|+.+|+.|++.+.+..
T Consensus 368 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 413 (575)
T PRK05945 368 GLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYV 413 (575)
T ss_pred CccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 479999999997642 232 1356778899999999987654
No 376
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=42.05 E-value=39 Score=32.22 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=31.8
Q ss_pred CCCeEEeeccccC----CCCCccchHHHHHHHHHHHHHHHHhCCC
Q 019274 263 FPNLFMAGDWITT----RHGSWSQERSYVTGLEAANRVVDYLGDG 303 (343)
Q Consensus 263 ~~~L~laGd~~~~----g~~~~~~ega~~Sg~~aA~~il~~~~~~ 303 (343)
-+|++++||.-.. |+-+.+|..|+.||+.||+.|.+.+..+
T Consensus 294 ~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~ 338 (428)
T PRK10157 294 GDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSD 338 (428)
T ss_pred cCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcC
Confidence 4799999998742 2212678889999999999999877643
No 377
>PLN02815 L-aspartate oxidase
Probab=42.00 E-value=37 Score=34.00 Aligned_cols=42 Identities=29% Similarity=0.304 Sum_probs=30.3
Q ss_pred CCCCCCCCeEEeecccc-CCCC-----CccchHHHHHHHHHHHHHHHH
Q 019274 258 RGFTSFPNLFMAGDWIT-TRHG-----SWSQERSYVTGLEAANRVVDY 299 (343)
Q Consensus 258 ~~~~~~~~L~laGd~~~-~g~~-----~~~~ega~~Sg~~aA~~il~~ 299 (343)
..++++||||-||+-.. .-|+ +.++-.|+..|+.|++.+.+.
T Consensus 385 ~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~ 432 (594)
T PLN02815 385 QGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH 432 (594)
T ss_pred CCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999753 2232 135667888999999988654
No 378
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=41.94 E-value=33 Score=33.97 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=30.3
Q ss_pred CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274 260 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 302 (343)
Q Consensus 260 ~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~ 302 (343)
++..+|+|.+||-+..+.. .+..|+..|..||..|...+..
T Consensus 270 ~Ts~p~IyAaGDv~~~~~~--~v~~A~~~G~~Aa~~i~~~l~~ 310 (555)
T TIGR03143 270 ETNVPGVYAAGDLRPKELR--QVVTAVADGAIAATSAERYVKE 310 (555)
T ss_pred ccCCCCEEEceeccCCCcc--hheeHHhhHHHHHHHHHHHHHh
Confidence 4678999999998642222 3456899999999999877653
No 379
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=41.75 E-value=30 Score=33.84 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=29.0
Q ss_pred CCCCCeEEeeccccCCC-----CCccchHHHHHHHHHHHHHHHHh
Q 019274 261 TSFPNLFMAGDWITTRH-----GSWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 261 ~~~~~L~laGd~~~~g~-----~~~~~ega~~Sg~~aA~~il~~~ 300 (343)
++|||||.||.-+..-| ++.++-.|+.+|+.|++.+.+..
T Consensus 459 ~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 459 SPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred CEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 58999999999653211 11356678899999999887653
No 380
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=41.71 E-value=23 Score=34.65 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=28.2
Q ss_pred CCCCCeEEeecccc----CCCCC--ccchHHHHHHHHHHHHHHH
Q 019274 261 TSFPNLFMAGDWIT----TRHGS--WSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 261 ~~~~~L~laGd~~~----~g~~~--~~~ega~~Sg~~aA~~il~ 298 (343)
.+|||||-||.-+. ..|+. .++-.|+.+|+.|++.+.+
T Consensus 467 ~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 467 RPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred CEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 48999999998753 13332 3478889999999998843
No 381
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=41.53 E-value=31 Score=34.66 Aligned_cols=40 Identities=35% Similarity=0.391 Sum_probs=29.6
Q ss_pred CCCCCeEEeeccccC-CCC-----CccchHHHHHHHHHHHHHHHHh
Q 019274 261 TSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 261 ~~~~~L~laGd~~~~-g~~-----~~~~ega~~Sg~~aA~~il~~~ 300 (343)
++++|||.||+-..+ -|+ +.++-.|+..|+.|++.+.+..
T Consensus 400 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~ 445 (617)
T PTZ00139 400 KIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEIL 445 (617)
T ss_pred CccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhh
Confidence 479999999997532 222 1357778899999999987754
No 382
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=41.17 E-value=33 Score=33.02 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=28.0
Q ss_pred CCCCCeEEeeccccC-----CCC-CccchHHHHHHHHHHHHHHHH
Q 019274 261 TSFPNLFMAGDWITT-----RHG-SWSQERSYVTGLEAANRVVDY 299 (343)
Q Consensus 261 ~~~~~L~laGd~~~~-----g~~-~~~~ega~~Sg~~aA~~il~~ 299 (343)
++|||||.||.-+.. .++ +.++-.|+.+|+.|++.+.+.
T Consensus 416 ~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~ 460 (466)
T PRK08274 416 RPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARH 460 (466)
T ss_pred CCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHH
Confidence 489999999976421 122 135667789999999988765
No 383
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=40.77 E-value=38 Score=36.25 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=31.5
Q ss_pred CCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCC
Q 019274 261 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 302 (343)
Q Consensus 261 ~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~ 302 (343)
+.++|+|.|||-+ |. .++..|+..|..||..+...++.
T Consensus 436 t~v~gVyaaGD~~--g~--~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 436 DAVQGCILAGAAN--GL--FGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred CCCCCeEEeeccC--Cc--cCHHHHHHHHHHHHHHHHHHcCC
Confidence 4579999999975 33 35677999999999999998885
No 384
>PRK08401 L-aspartate oxidase; Provisional
Probab=40.59 E-value=47 Score=32.04 Aligned_cols=41 Identities=29% Similarity=0.311 Sum_probs=28.9
Q ss_pred CCCCCCCeEEeecccc-CCCCC-----ccchHHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWIT-TRHGS-----WSQERSYVTGLEAANRVVDY 299 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~-~g~~~-----~~~ega~~Sg~~aA~~il~~ 299 (343)
.++++||||-||+-+. .-|+. .++-.++..|+.|++.+.+.
T Consensus 319 ~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 319 YRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred CcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 3478999999999753 22331 23445788899999998654
No 385
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=40.36 E-value=39 Score=33.70 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=28.5
Q ss_pred CCCCCeEEeeccccC----CCCC--ccchHHHHHHHHHHHHHHHHh
Q 019274 261 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 261 ~~~~~L~laGd~~~~----g~~~--~~~ega~~Sg~~aA~~il~~~ 300 (343)
.+|||||.||..+.. .+++ .++..|+.+|+.|++.+.+..
T Consensus 527 ~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 572 (578)
T PRK12843 527 QPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRT 572 (578)
T ss_pred CCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhh
Confidence 489999999966531 2321 245668999999999987654
No 386
>PRK08071 L-aspartate oxidase; Provisional
Probab=40.35 E-value=39 Score=33.08 Aligned_cols=41 Identities=37% Similarity=0.447 Sum_probs=29.4
Q ss_pred CCCCCCCeEEeeccccC-CCC-----CccchHHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDY 299 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~-g~~-----~~~~ega~~Sg~~aA~~il~~ 299 (343)
.++++||||.||+-..+ -|+ +.++-.++..|+.|++.+...
T Consensus 341 ~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 341 GETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred CcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 44789999999997532 222 134667788999999998654
No 387
>PRK14727 putative mercuric reductase; Provisional
Probab=39.95 E-value=38 Score=32.83 Aligned_cols=37 Identities=22% Similarity=0.131 Sum_probs=29.1
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
.+|.++|+|.+||-+. .+ ..+.-|...|+.||+.|+.
T Consensus 309 ~~Ts~~~IyA~GD~~~--~~-~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 309 METSAPDIYAAGDCSD--LP-QFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred eecCCCCEEEeeecCC--cc-hhhhHHHHHHHHHHHHHcC
Confidence 3467899999999864 34 3556788899999999975
No 388
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=39.92 E-value=41 Score=32.26 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=28.4
Q ss_pred CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 260 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 260 ~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
++..||+|.+||-+. .+ .....|+..|..||+.|+.
T Consensus 299 ~t~~~~IyAiGD~~~--~~-~~~~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 299 QTAVPHIYAVGDVIG--FP-SLASASMDQGRIAAQHAVG 334 (461)
T ss_pred ccCCCCEEEeeecCC--Cc-ccHhHHHHHHHHHHHHHcC
Confidence 467899999999863 34 3456789999999999974
No 389
>PRK07512 L-aspartate oxidase; Provisional
Probab=38.83 E-value=46 Score=32.60 Aligned_cols=42 Identities=31% Similarity=0.390 Sum_probs=29.6
Q ss_pred CCCCCCCeEEeeccccCC-CCC-----ccchHHHHHHHHHHHHHHHHh
Q 019274 259 GFTSFPNLFMAGDWITTR-HGS-----WSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g-~~~-----~~~ega~~Sg~~aA~~il~~~ 300 (343)
.+++++|||.||+-..+| |+. .++-.++..|+.|++.+.+..
T Consensus 350 ~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~ 397 (513)
T PRK07512 350 GRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTP 397 (513)
T ss_pred CccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347899999999975322 221 245667889999999887654
No 390
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=38.65 E-value=45 Score=33.11 Aligned_cols=58 Identities=26% Similarity=0.405 Sum_probs=43.5
Q ss_pred hhhhHHHHHHHHH-cCCeEEcceeeeEEEecCCCCeEEEEEE---C-Ce--EEecCEEEEeeChhh
Q 019274 61 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGIST 119 (343)
Q Consensus 61 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~g~v~~V~~---~-g~--~~~ad~VV~a~p~~~ 119 (343)
..+...|.+.+.+ .+.+|+.+..|.+|..+++ +.|.++.. . ++ .+.++.||+|++...
T Consensus 138 ~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~-~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 138 HELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDG-GGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhhhheecCC-CcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 4577888888776 5668999999999998864 44555543 2 43 568899999998765
No 391
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=38.52 E-value=50 Score=32.12 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=29.2
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
.+|.++|+|.+||-+. .+ ....-|+..|..+|+.|+.
T Consensus 314 l~Ts~~~IyA~GDv~~--~~-~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 314 SRTNVPNIYAIGDVTD--RV-MLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred CcCCCCCEEEeeecCC--Cc-ccHHHHHHHHHHHHHHHhC
Confidence 3467899999999964 33 3556688999999999975
No 392
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=37.83 E-value=1.1e+02 Score=29.64 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=28.3
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
.++..+|+|.+||.+. + + ....-|...|..||+.|..
T Consensus 310 ~~Ts~~~VyA~GD~~~-~-~-~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 310 CRTNVPNVYAIGDVVR-G-P-MLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred CccCCCCEEEEEeccC-C-c-chHHHHHHHHHHHHHHHcC
Confidence 3467899999999864 2 3 2456688899999999975
No 393
>PF03275 GLF: UDP-galactopyranose mutase; InterPro: IPR015899 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity; PDB: 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 1V0J_D 3MJ4_G 3HDQ_E ....
Probab=37.66 E-value=3.1 Score=35.10 Aligned_cols=93 Identities=12% Similarity=-0.040 Sum_probs=52.7
Q ss_pred HhHHHHHHhhhcCCcccccHHHHHHHHHHHHHhc-C-CCceeEeecCCCchhhhHHHHHHHHHcCCeEEcceeeeEEEec
Q 019274 13 NVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH-Q-KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYD 90 (343)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~-~-~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~ 90 (343)
.|+.+.....|+.+|+++++..+..+=.+..... . ...--++|++| ...+.+.| |...+.+|++|+...++...
T Consensus 1 k~f~~YT~KQWg~~p~eL~~~v~~RvPvr~~~d~~YF~d~yQgiP~~G-YT~~fe~m---L~h~~I~v~l~td~~~~~~~ 76 (204)
T PF03275_consen 1 KFFKGYTKKQWGVDPEELDASVIKRVPVRFSYDDRYFNDKYQGIPKDG-YTKMFENM---LDHPNIEVRLNTDFFDIIEF 76 (204)
T ss_dssp HHTHHHHHHHHTSSGGGSBCCCCSCS-BBSSS--BS--SSEEEEETTH-HHHHHHHH---C-STTEEEECS--GGGCHHH
T ss_pred CccCccCHHHcCCChHHCCHHHhcCCceeeCCCCccccChhhhCchhC-HHHHHHHH---hCCCceEEEcCCCHHHhhcc
Confidence 3678889999999999999843211100000000 0 01112679999 45566655 44568899999877666541
Q ss_pred CCCCeEEEEEECCeEEecCEEEEeeChhhHH
Q 019274 91 EERCCISDVVCGKETYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 91 ~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~ 121 (343)
+ + ...+|.||.|.+++.+-
T Consensus 77 ~--~----------~~~~~~viyTG~iDe~F 95 (204)
T PF03275_consen 77 G--G----------EPYADKVIYTGPIDEYF 95 (204)
T ss_dssp H--C----------CCTEEEEEE-S-HHHHT
T ss_pred c--c----------cccCCeEEEeCCHHHHh
Confidence 1 1 22478999999987764
No 394
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=37.60 E-value=51 Score=32.03 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=28.6
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
.+|.++|+|.+||-+.. .+ ....-|+..|+.+|+.|+.
T Consensus 306 ~~Ts~p~IyA~GDv~~~-~~-~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 306 EQTNVPYIYAVGDILED-KQ-ELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred cccCCCCEEEEEEecCC-Cc-cchHHHHHHHHHHHHHHhc
Confidence 34678999999998742 22 2445688899999999975
No 395
>PRK13748 putative mercuric reductase; Provisional
Probab=37.53 E-value=44 Score=33.03 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=28.9
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
.+|.++|+|.+||-+. .+ ..+.-|...|..||..|+.
T Consensus 391 ~~Ts~~~IyA~GD~~~--~~-~~~~~A~~~g~~aa~~i~g 427 (561)
T PRK13748 391 MRTSVPHIYAAGDCTD--QP-QFVYVAAAAGTRAAINMTG 427 (561)
T ss_pred cccCCCCEEEeeecCC--Cc-cchhHHHHHHHHHHHHHcC
Confidence 3567899999999964 33 3556688899999999974
No 396
>PLN02507 glutathione reductase
Probab=37.34 E-value=52 Score=32.14 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=29.2
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
.+|.++|+|.+||.+. +. .....|...|+.+|+.|+.
T Consensus 326 ~~Ts~p~IyAiGDv~~-~~--~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 326 SRTNIPSIWAIGDVTN-RI--NLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CcCCCCCEEEeeEcCC-CC--ccHHHHHHHHHHHHHHHcC
Confidence 4578899999999975 23 2456788999999999875
No 397
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=37.32 E-value=47 Score=32.04 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=29.2
Q ss_pred CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 260 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 260 ~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
+|.+||+|.+||.+. .+ ....-|..-|+.||+.|+.
T Consensus 299 ~Tnvp~IyA~GDV~~--~~-~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 299 TTNVPGIYAIGDVIG--GP-MLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred ccCCCCEEEeeccCC--Cc-ccHhHHHHHHHHHHHHHhC
Confidence 356899999999964 34 2566788999999999997
No 398
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=37.09 E-value=46 Score=31.92 Aligned_cols=37 Identities=24% Similarity=0.169 Sum_probs=28.9
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
.++..+|+|.+||.+. .+ ....-|...|..||..|..
T Consensus 294 ~~ts~~~IyA~GD~~~--~~-~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 294 TQTSVPGIYAAGDVNG--KP-PLLHEAADEGRIAAENAAG 330 (460)
T ss_pred cccCCCCEEEEEecCC--Cc-cchhHHHHHHHHHHHHhcC
Confidence 3467899999999974 23 2446688999999999976
No 399
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=36.92 E-value=53 Score=32.72 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=28.5
Q ss_pred CCCCeEEeeccccC-CCCC-----ccchHHHHHHHHHHHHHHHHh
Q 019274 262 SFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 262 ~~~~L~laGd~~~~-g~~~-----~~~ega~~Sg~~aA~~il~~~ 300 (343)
+++|||.||+-+.+ .|+. .++-.|+.+|+.|++.+.+..
T Consensus 370 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~ 414 (577)
T PRK06069 370 WVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYA 414 (577)
T ss_pred EeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 59999999997542 2321 346678899999999887654
No 400
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=36.67 E-value=44 Score=30.30 Aligned_cols=41 Identities=29% Similarity=0.238 Sum_probs=29.6
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhC
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 301 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~ 301 (343)
.+|.+||+|.|||-....+ .-+.-|...|..||..+.+.+.
T Consensus 261 ~~TsvpGifAaGDv~~~~~--rqi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 261 METSVPGIFAAGDVADKNG--RQIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred cccCCCCEEEeEeeccCcc--cEEeehhhhHHHHHHHHHHHhh
Confidence 5688999999999976322 2345567788888887776654
No 401
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=35.41 E-value=68 Score=29.91 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=28.2
Q ss_pred CCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChh
Q 019274 75 GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 118 (343)
Q Consensus 75 G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~ 118 (343)
+..|+++++|+++ ++ +.|+ + .+|++++||.||-|.+..
T Consensus 100 ~~~i~~~~~V~~v--~~--~~v~-l-~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 100 PEGVILGRKAVGL--DA--DGVD-L-APGTRINARSVIDCRGFK 137 (370)
T ss_pred cccEEecCEEEEE--eC--CEEE-E-CCCCEEEeeEEEECCCCC
Confidence 3348889999988 33 3332 3 457789999999999976
No 402
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=35.37 E-value=1.6e+02 Score=29.95 Aligned_cols=42 Identities=29% Similarity=0.402 Sum_probs=29.8
Q ss_pred CCC-CCCCeEEeeccccC-CCC-----CccchHHHHHHHHHHHHHHHHh
Q 019274 259 GFT-SFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 259 ~~~-~~~~L~laGd~~~~-g~~-----~~~~ega~~Sg~~aA~~il~~~ 300 (343)
.++ +++|||-||+.... -|+ +.++-.|+..|+.|++.+.+..
T Consensus 381 ~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~ 429 (657)
T PRK08626 381 GESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFC 429 (657)
T ss_pred CCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 345 69999999997532 232 1346778889999999887654
No 403
>PRK14694 putative mercuric reductase; Provisional
Probab=35.26 E-value=54 Score=31.62 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=28.9
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
.++.++|+|.+||-+. .+ ..+.-|...|..||..|+.
T Consensus 298 ~~Ts~~~IyA~GD~~~--~~-~~~~~A~~~G~~aa~~i~~ 334 (468)
T PRK14694 298 LQTTVSGIYAAGDCTD--QP-QFVYVAAAGGSRAAINMTG 334 (468)
T ss_pred cccCCCCEEEEeecCC--Cc-ccHHHHHHHHHHHHHHhcC
Confidence 3567899999999964 33 3566788899999999864
No 404
>PTZ00052 thioredoxin reductase; Provisional
Probab=34.78 E-value=57 Score=31.85 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=28.8
Q ss_pred CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 260 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 260 ~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
+|..||+|.+||-+. +.+ .....|+..|..+|+.|+.
T Consensus 304 ~Ts~p~IyAiGDv~~-~~~-~l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 304 CTNIPNIFAVGDVVE-GRP-ELTPVAIKAGILLARRLFK 340 (499)
T ss_pred cCCCCCEEEEEEecC-CCc-ccHHHHHHHHHHHHHHHhC
Confidence 467899999999764 334 3556788999999999975
No 405
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=34.71 E-value=33 Score=32.35 Aligned_cols=32 Identities=19% Similarity=0.464 Sum_probs=22.7
Q ss_pred CCCCeEEeeccccCCCCC--ccchHHHHHHHHHH
Q 019274 262 SFPNLFMAGDWITTRHGS--WSQERSYVTGLEAA 293 (343)
Q Consensus 262 ~~~~L~laGd~~~~g~~~--~~~ega~~Sg~~aA 293 (343)
.+|||||||+-+...-+. =.+.-|..||..|+
T Consensus 366 ~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 366 LVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred CCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 479999999887531111 14677889999886
No 406
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=34.40 E-value=59 Score=31.33 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=28.8
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
.++..||+|.+||-+. +.+ ...-|...|..||+.|+.
T Consensus 299 ~~Ts~p~IyAiGD~~~-~~~--l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 299 MRTNVPHIYAIGDVTA-KLQ--LAHVAEAQGVVAAETIAG 335 (466)
T ss_pred cccCCCCEEEEeecCC-Ccc--cHhHHHHHHHHHHHHHcC
Confidence 3467899999999964 232 456688999999999975
No 407
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=33.95 E-value=50 Score=31.83 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=29.4
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 299 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~ 299 (343)
.+|.++|+|.+||-+. + + ....-|...|+.||+.|+..
T Consensus 301 ~~Ts~~~IyA~GD~~~-~-~-~la~~A~~~g~~aa~~i~~~ 338 (466)
T PRK06115 301 HRTSVPGVWVIGDVTS-G-P-MLAHKAEDEAVACIERIAGK 338 (466)
T ss_pred eecCCCCEEEeeecCC-C-c-ccHHHHHHHHHHHHHHHcCC
Confidence 3567899999999974 2 3 24566888999999999754
No 408
>PRK07395 L-aspartate oxidase; Provisional
Probab=33.89 E-value=46 Score=32.97 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=27.1
Q ss_pred CCCCCCCeEEeeccccC-CCCC-----ccchHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~-g~~~-----~~~ega~~Sg~~aA~~il~ 298 (343)
.+++++|||.||+-+.+ -|+. .++-.++..|+.|++.+..
T Consensus 356 ~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~~~ 401 (553)
T PRK07395 356 NQTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLELP 401 (553)
T ss_pred CcccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 34789999999997532 2221 2345567789998888753
No 409
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=33.54 E-value=1.3e+02 Score=28.95 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=27.3
Q ss_pred CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 260 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 260 ~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
++..+|+|.+||.+. + + .....|...|..||+.|..
T Consensus 307 ~ts~~~IyAiGD~~~-~-~-~~~~~A~~~g~~aa~~i~g 342 (472)
T PRK05976 307 QTKERHIYAIGDVIG-E-P-QLAHVAMAEGEMAAEHIAG 342 (472)
T ss_pred ccCCCCEEEeeecCC-C-c-ccHHHHHHHHHHHHHHHcC
Confidence 456799999999964 2 2 2456688899999998864
No 410
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=33.49 E-value=2.1e+02 Score=26.02 Aligned_cols=79 Identities=20% Similarity=0.196 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhhcccCCCCceeeeEEEecCCCccccCCCCCCCCC--CCCC-CCCCeEEeeccccCCCCCccchHHHHH
Q 019274 212 QVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMM--RGFT-SFPNLFMAGDWITTRHGSWSQERSYVT 288 (343)
Q Consensus 212 e~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~p--~~~~-~~~~L~laGd~~~~g~~~~~~ega~~S 288 (343)
+=...+++...++.|.++.++++...+ ++.|+...-|- ...+ +-.++-.+=+| ||++.++.-+.-+
T Consensus 257 ~D~~dIl~rc~aL~P~l~~a~ii~E~v--------GlRP~Rk~vRlE~e~~~~~~k~~~VVHnY---GHgG~G~Tl~wGt 325 (342)
T KOG3923|consen 257 EDRRDILERCCALEPSLRHAEIIREWV--------GLRPGRKQVRLEAELRTRGGKRLTVVHNY---GHGGNGFTLGWGT 325 (342)
T ss_pred hhHHHHHHHHHHhCcccccceehhhhh--------cccCCCCceeeeeeeecCCCccceeEeec---cCCCCceecccch
Confidence 334567888888899998655544322 33344322111 1111 12334334444 4443344456677
Q ss_pred HHHHHHHHHHHhC
Q 019274 289 GLEAANRVVDYLG 301 (343)
Q Consensus 289 g~~aA~~il~~~~ 301 (343)
|..||+.++..++
T Consensus 326 Alea~~Lv~~~l~ 338 (342)
T KOG3923|consen 326 ALEAAKLVLDALG 338 (342)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888877654
No 411
>PRK06370 mercuric reductase; Validated
Probab=33.31 E-value=63 Score=31.08 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=29.2
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 299 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~ 299 (343)
.++.++|+|.+||-+. . + .....|...|..||+.|+..
T Consensus 297 l~t~~~~IyAiGD~~~-~-~-~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 297 LRTTNPGIYAAGDCNG-R-G-AFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred CcCCCCCEEEeeecCC-C-c-ccHHHHHHHHHHHHHHHhCC
Confidence 3467899999999964 2 3 24567888999999999753
No 412
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=32.94 E-value=56 Score=31.55 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=28.8
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
.++..+|+|.+||.+. .+ ....-|...|..||+.|+.
T Consensus 300 ~~t~~p~VyAiGDv~~--~~-~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 300 CRTNVPHIFAIGDIVG--QP-MLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred cccCCCCEEEehhhcC--Cc-ccHHHHHHHHHHHHHHHcC
Confidence 3567899999999863 33 3556788999999999975
No 413
>PRK07804 L-aspartate oxidase; Provisional
Probab=32.81 E-value=47 Score=32.78 Aligned_cols=42 Identities=33% Similarity=0.380 Sum_probs=29.0
Q ss_pred CCCCCCCeEEeeccccC-CCCC-----ccchHHHHHHHHHHHHHHHHh
Q 019274 259 GFTSFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~-g~~~-----~~~ega~~Sg~~aA~~il~~~ 300 (343)
.++++||||.||+-+.+ -|+. .++..++..|+.|++.+.+..
T Consensus 366 ~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~~ 413 (541)
T PRK07804 366 GRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAHA 413 (541)
T ss_pred CcccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44789999999997532 2221 235556778999999887654
No 414
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.30 E-value=57 Score=32.63 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=29.1
Q ss_pred CCCCeEEeeccccC-CCCC-----ccchHHHHHHHHHHHHHHHHh
Q 019274 262 SFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 262 ~~~~L~laGd~~~~-g~~~-----~~~ega~~Sg~~aA~~il~~~ 300 (343)
++||||-||+-..+ -|+. .++-.|+..|+.|++.+.+..
T Consensus 382 ~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~~ 426 (591)
T PRK07057 382 PVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHV 426 (591)
T ss_pred eeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 79999999997542 2321 356778999999999987653
No 415
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=31.30 E-value=74 Score=31.96 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=28.2
Q ss_pred CCCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHh
Q 019274 258 RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 258 ~~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~ 300 (343)
..+|.++|||.|||-...+.. ....++...|..|++.+...+
T Consensus 390 ~~~T~v~glyA~Ge~~~~~~~-~l~~~s~~~g~~ag~~~~~~~ 431 (608)
T PRK06854 390 NRMTTVEGLFAAGDVVGGSPH-KFSSGSFAEGRIAAKAAVRYI 431 (608)
T ss_pred ccccCCCCEEEeeecCCCCcc-hhHHHHHHHHHHHHHHHHHHH
Confidence 345789999999998643322 234556677777777776554
No 416
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=31.18 E-value=62 Score=31.09 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=28.6
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 299 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~ 299 (343)
.+|..+|+|.+||-+. .++ ...-|...|+.+|+.|+..
T Consensus 291 ~~Ts~~~IyA~GD~~~-~~~--l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 291 GRTSARGVWALGDVSS-PYQ--LKHVANAEARVVKHNLLHP 328 (452)
T ss_pred cccCCCCEEEeecccC-ccc--ChhHHHHHHHHHHHHhcCC
Confidence 3467899999999975 333 3455788999999999753
No 417
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=30.33 E-value=66 Score=30.88 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=28.8
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
.++..+|+|.+||.+. + + .....|...|..+|+.|..
T Consensus 297 ~~t~~~~VyAiGD~~~-~-~-~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 297 LRTNVPNIYAIGDIVG-G-P-MLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CccCCCCEEEeeecCC-C-c-chHHHHHHHHHHHHHHHcC
Confidence 3467899999999964 2 3 2456688999999999975
No 418
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.17 E-value=55 Score=34.60 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=30.5
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHh
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 300 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~ 300 (343)
.+|.++|||.||+.....+ .++-+|+..|..|++.+.+..
T Consensus 370 ~~T~v~GLfAaGE~a~~~~--nsl~~a~v~G~~Ag~~a~~~~ 409 (897)
T PRK13800 370 ARTTVPGLYAAGDLACVPH--NYMIGAFVFGDLAGAHAAGTL 409 (897)
T ss_pred CcccCCCeEechhccCcch--hhhhhHHHhHHHHHHHHHHHH
Confidence 4578999999999754333 466678899999999887654
No 419
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=30.01 E-value=1.5e+02 Score=31.89 Aligned_cols=50 Identities=28% Similarity=0.338 Sum_probs=32.7
Q ss_pred HcCCeEEcceeeeEEEecCCCCeEE----------------EEEEC-CeEEecCEEEEeeChhhHHHhhh
Q 019274 73 TRGCEFLDGRRVTDFIYDEERCCIS----------------DVVCG-KETYSAGAVVLAVGISTLQELIK 125 (343)
Q Consensus 73 ~~G~~i~~~~~V~~I~~~~~~g~v~----------------~V~~~-g~~~~ad~VV~a~p~~~~~~Ll~ 125 (343)
+.|++++.++.+.+|.. + |++. .+.++ +.++++|.||+|++...-..++.
T Consensus 719 eeGVe~~~~~~p~~I~~-d--G~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle 785 (1019)
T PRK09853 719 EDGVEFKELLNPESFDA-D--GTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLK 785 (1019)
T ss_pred HcCCEEEeCCceEEEEc-C--CcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHH
Confidence 46999999988888852 2 3321 12222 24789999999998764434443
No 420
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.98 E-value=87 Score=29.05 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=46.6
Q ss_pred hhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC-CeEEecCEEEEeeChh
Q 019274 61 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 118 (343)
Q Consensus 61 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~-g~~~~ad~VV~a~p~~ 118 (343)
..|..+|.++.++..++|.--.+++++......|....|++. |..++++.||+++++.
T Consensus 266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 266 PKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 359999999999999999999999999875321333467777 6689999999999983
No 421
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=29.91 E-value=1e+02 Score=29.18 Aligned_cols=53 Identities=30% Similarity=0.350 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHcC-CeEEcceeeeEEEecCCCCeEEEEEECC-eEEecCEEEEeeChhhH
Q 019274 62 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTL 120 (343)
Q Consensus 62 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~g~v~~V~~~g-~~~~ad~VV~a~p~~~~ 120 (343)
.+.-++.+.++..+ +++..+ .|++|..++ .+ |.+++ +.+.+|+.|++++..+-
T Consensus 58 ~i~~p~~~~~~~~~~v~~~~~-~V~~ID~~~--k~---V~~~~~~~i~YD~LVvalGs~~~ 112 (405)
T COG1252 58 EIAIPLRALLRKSGNVQFVQG-EVTDIDRDA--KK---VTLADLGEISYDYLVVALGSETN 112 (405)
T ss_pred heeccHHHHhcccCceEEEEE-EEEEEcccC--CE---EEeCCCccccccEEEEecCCcCC
Confidence 45666777777555 666665 789998876 43 55664 78999999999998654
No 422
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=29.88 E-value=76 Score=29.28 Aligned_cols=63 Identities=19% Similarity=0.177 Sum_probs=48.0
Q ss_pred CCCchhhhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC----Ce--EEecCEEEEeeChhhHH
Q 019274 57 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTLQ 121 (343)
Q Consensus 57 gG~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~----g~--~~~ad~VV~a~p~~~~~ 121 (343)
-|+-+.+++.++++++++|.++.-.+...+++..++ |+ ..|... ++ +-++|.|++|++-....
T Consensus 234 rGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~-g~-l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~ 302 (503)
T KOG4716|consen 234 RGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDD-GK-LRVFYKNTNTGEEGEEEYDTVLWAIGRKALT 302 (503)
T ss_pred ccccHHHHHHHHHHHHHhCCceeecccceeeeeccC-Cc-EEEEeecccccccccchhhhhhhhhccccch
Confidence 455778999999999999999999988899988775 65 233332 22 44789999999987654
No 423
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=29.73 E-value=1.2e+02 Score=29.44 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=31.2
Q ss_pred CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHHhCCCC
Q 019274 260 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGS 304 (343)
Q Consensus 260 ~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~~~~~~ 304 (343)
.+..+|+|+||.-..| --+..++..|..||.+...-++.|.
T Consensus 508 ~s~~~GIflAG~aqgP----kdI~~siaqa~aAA~kA~~~l~~g~ 548 (622)
T COG1148 508 DSNRDGIFLAGAAQGP----KDIADSIAQAKAAAAKAAQLLGRGE 548 (622)
T ss_pred cccCCcEEEeecccCC----ccHHHHHHHhHHHHHHHHHHhhcCc
Confidence 3567899999988553 3567788888888888877777655
No 424
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=29.65 E-value=67 Score=35.08 Aligned_cols=42 Identities=26% Similarity=0.225 Sum_probs=29.7
Q ss_pred CCCCCeEEeeccccCC----C-CCccchHHHHHHHHHHHHHHHHhCC
Q 019274 261 TSFPNLFMAGDWITTR----H-GSWSQERSYVTGLEAANRVVDYLGD 302 (343)
Q Consensus 261 ~~~~~L~laGd~~~~g----~-~~~~~ega~~Sg~~aA~~il~~~~~ 302 (343)
.+|+|||.||..+..- + ++.++-.|+.+|+.|++.+.+.+..
T Consensus 858 ~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~ 904 (1167)
T PTZ00306 858 RPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQK 904 (1167)
T ss_pred ceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 4899999999975321 1 1134566888999999988876643
No 425
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=28.80 E-value=50 Score=31.45 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=24.2
Q ss_pred CCCCeEEeeccccC------CCCCccchHHHHHHHHHHHHHH
Q 019274 262 SFPNLFMAGDWITT------RHGSWSQERSYVTGLEAANRVV 297 (343)
Q Consensus 262 ~~~~L~laGd~~~~------g~~~~~~ega~~Sg~~aA~~il 297 (343)
.++|||.+|.-+.+ |=| +++ |+.||..||+.|+
T Consensus 381 ~~~Nl~a~G~vL~G~d~~~~gcG-~GV--ai~Ta~~aa~~i~ 419 (419)
T TIGR03378 381 TIENLYAIGAVLGGYDPIFEGCG-SGV--AVSTALHAAEQII 419 (419)
T ss_pred ccccceEechhhcCCChHhcCCC-chh--HHHHHHHHHHhhC
Confidence 48999999987752 112 344 7889999999874
No 426
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=27.88 E-value=79 Score=30.27 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=28.6
Q ss_pred CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 019274 260 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 299 (343)
Q Consensus 260 ~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~ 299 (343)
++..+|+|.+||... + + .....|+..|..+|+.|...
T Consensus 296 ~t~~~~IyaiGD~~~-~-~-~~~~~A~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 296 RTNVPGIYAIGDVIG-G-P-MLAHVASHEGIVAAENIAGK 332 (461)
T ss_pred ccCCCCEEEeeecCC-C-c-ccHHHHHHHHHHHHHHHcCC
Confidence 456899999999864 2 2 24566889999999999754
No 427
>PRK06444 prephenate dehydrogenase; Provisional
Probab=27.50 E-value=1.5e+02 Score=24.86 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEECCeEEecCEEEEeeChhhHHHhhhh
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN 126 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~g~~~~ad~VV~a~p~~~~~~Ll~~ 126 (343)
+=+.+++.+++.|-.|. . -+||.||+|+|+..+.+++..
T Consensus 12 mG~~~~~~~~~~g~~v~---------~----------------~~~DlVilavPv~~~~~~i~~ 50 (197)
T PRK06444 12 LGRVLCSILDDNGLGVY---------I----------------KKADHAFLSVPIDAALNYIES 50 (197)
T ss_pred HHHHHHHHHHhCCCEEE---------E----------------CCCCEEEEeCCHHHHHHHHHH
Confidence 45667777777775553 1 148999999999998877664
No 428
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=27.23 E-value=92 Score=29.91 Aligned_cols=38 Identities=24% Similarity=0.116 Sum_probs=29.0
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 299 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~ 299 (343)
.+|..+|+|.+||-+. + + ....-|...|..||..|+..
T Consensus 292 ~~Ts~~~VyAiGD~~~-~-~-~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 292 LRTSNPGIYAAGDVTG-G-L-QLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred ccCCCCCEEEeeecCC-C-c-ccHhHHHHHHHHHHHHhcCC
Confidence 3567899999999975 2 2 24456888999999999753
No 429
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=27.04 E-value=67 Score=29.65 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=30.9
Q ss_pred CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 019274 260 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 299 (343)
Q Consensus 260 ~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~ 299 (343)
.+.+|++|.+||-+. +-| -...-|+.||+..|++|.+.
T Consensus 328 ~t~vp~vyAvGDIl~-~kp-ELTPvAIqsGrlLa~Rlf~g 365 (503)
T KOG4716|consen 328 ATNVPYVYAVGDILE-DKP-ELTPVAIQSGRLLARRLFAG 365 (503)
T ss_pred hcCCCceEEecceec-CCc-ccchhhhhhchHHHHHHhcC
Confidence 367899999999987 555 35567999999999999764
No 430
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=26.41 E-value=1e+02 Score=29.87 Aligned_cols=43 Identities=28% Similarity=0.348 Sum_probs=29.0
Q ss_pred CeEEcceeeeEEEecCC-CC--eEEEEEEC-CeEEecCEEEEeeChhh
Q 019274 76 CEFLDGRRVTDFIYDEE-RC--CISDVVCG-KETYSAGAVVLAVGIST 119 (343)
Q Consensus 76 ~~i~~~~~V~~I~~~~~-~g--~v~~V~~~-g~~~~ad~VV~a~p~~~ 119 (343)
-+|+-+ .|.+|.+.++ .| +|.||.+. |..+.|+.||++++...
T Consensus 140 L~ire~-~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTFL 186 (679)
T KOG2311|consen 140 LEIREG-AVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFL 186 (679)
T ss_pred chhhhh-hhhheeeccCCCCceEEEEEEEecCcEeccceEEEeeccce
Confidence 345544 5666665542 11 36788886 67899999999998653
No 431
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=26.02 E-value=2.2e+02 Score=28.95 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=30.9
Q ss_pred HHcCCeEEcceeeeEEEecCCCCeE--EEEEE----------------CCe--EEecCEEEEeeChh
Q 019274 72 RTRGCEFLDGRRVTDFIYDEERCCI--SDVVC----------------GKE--TYSAGAVVLAVGIS 118 (343)
Q Consensus 72 ~~~G~~i~~~~~V~~I~~~~~~g~v--~~V~~----------------~g~--~~~ad~VV~a~p~~ 118 (343)
.+.|++|++++.+.+|..++ +++ ..++. +|+ ++++|.||++++..
T Consensus 372 ~~eGV~i~~~~~~~~i~~~~--~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~ 436 (652)
T PRK12814 372 LAEGVSLRELAAPVSIERSE--GGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ 436 (652)
T ss_pred HHcCCcEEeccCcEEEEecC--CeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence 35699999999999987655 432 22211 222 58999999999863
No 432
>PRK07846 mycothione reductase; Reviewed
Probab=25.72 E-value=1e+02 Score=29.51 Aligned_cols=38 Identities=13% Similarity=0.032 Sum_probs=28.3
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 299 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~ 299 (343)
.+|..||+|.+||-+. ..+ ...-|...|+.+|+.|+..
T Consensus 288 ~~Ts~p~IyA~GD~~~-~~~--l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 288 QRTSAEGVFALGDVSS-PYQ--LKHVANHEARVVQHNLLHP 325 (451)
T ss_pred cccCCCCEEEEeecCC-Ccc--ChhHHHHHHHHHHHHHcCC
Confidence 3467899999999975 233 3455788899999998753
No 433
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=25.64 E-value=1.1e+02 Score=29.77 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=27.2
Q ss_pred HHHHHHHhhhcccCCCCceeeeEEEecCCCc-cccCCCCCCCCCCCCC-CCCCeEEeeccc
Q 019274 215 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSL-THFFPGSYKYMMRGFT-SFPNLFMAGDWI 273 (343)
Q Consensus 215 ~~~~~~L~~~~p~~~~~~~~~~~~~r~~~~~-~~~~~g~~~~~p~~~~-~~~~L~laGd~~ 273 (343)
+.+...|-+.+|++..++++. -..++ |-|.+.. +.-|...| .++||||||.--
T Consensus 344 ee~Q~~lir~IpGLEn~~i~q-----P~YgVeYDyv~pr-Qlk~sLeTkkV~GLF~AGQIN 398 (679)
T KOG2311|consen 344 EELQLQLIRSIPGLENAEILQ-----PGYGVEYDYVDPR-QLKPSLETKKVQGLFFAGQIN 398 (679)
T ss_pred HHHHHHHHHhccCcccceeec-----ccccceecccChH-HcchhhhhhhccceEEeeeec
Confidence 445566777789887533321 11111 1111110 11234444 689999999763
No 434
>PF15647 Tox-REase-3: Restriction endonuclease fold toxin 3
Probab=25.26 E-value=90 Score=22.93 Aligned_cols=27 Identities=11% Similarity=0.375 Sum_probs=21.8
Q ss_pred eEeecCCCchhhhHHHHHHHHHcCCeEEcce
Q 019274 52 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGR 82 (343)
Q Consensus 52 ~~~~~gG~~~~l~~~l~~~l~~~G~~i~~~~ 82 (343)
..|++|+ +.+.+.+++++.|++|++.+
T Consensus 81 ~f~F~~~----v~~kv~eY~e~~G~~Vii~t 107 (109)
T PF15647_consen 81 YFWFKGE----VHDKVKEYIERYGGKVIIDT 107 (109)
T ss_pred EEEeccc----ccHHHHHHHHHcCcEEEecC
Confidence 3467777 56789999999999998875
No 435
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=25.03 E-value=55 Score=22.84 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.7
Q ss_pred CCCchhhhHHHHHHHHHcCCeEEccee
Q 019274 57 GTLREKIFEPWMDSMRTRGCEFLDGRR 83 (343)
Q Consensus 57 gG~~~~l~~~l~~~l~~~G~~i~~~~~ 83 (343)
.|++..|++++.+.++++|.+|...|+
T Consensus 37 qGia~~L~~~~l~~a~~~~~kv~p~C~ 63 (78)
T PF14542_consen 37 QGIAKKLVEAALDYARENGLKVVPTCS 63 (78)
T ss_dssp TTHHHHHHHHHHHHHHHTT-EEEETSH
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEEECH
Confidence 488889999999999999999987765
No 436
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=24.98 E-value=56 Score=23.33 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHcC---CeEEcceeeeEEEecCC-------CCeEEEEEE-C-CeEE-ecCEEEEeeChhhHHHhhhh
Q 019274 62 KIFEPWMDSMRTRG---CEFLDGRRVTDFIYDEE-------RCCISDVVC-G-KETY-SAGAVVLAVGISTLQELIKN 126 (343)
Q Consensus 62 ~l~~~l~~~l~~~G---~~i~~~~~V~~I~~~~~-------~g~v~~V~~-~-g~~~-~ad~VV~a~p~~~~~~Ll~~ 126 (343)
.+..+|++.+.+.| .+|...+ .+..+ ...+ .+.. + .+.. .+|.||++++|..+..++..
T Consensus 9 ~mg~al~~~l~~~g~~~~~v~~~~-----~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~advvilav~p~~~~~v~~~ 80 (96)
T PF03807_consen 9 NMGSALARGLLASGIKPHEVIIVS-----SRSPEKAAELAKEYGV-QATADDNEEAAQEADVVILAVKPQQLPEVLSE 80 (96)
T ss_dssp HHHHHHHHHHHHTTS-GGEEEEEE-----ESSHHHHHHHHHHCTT-EEESEEHHHHHHHTSEEEE-S-GGGHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCceeEEeec-----cCcHHHHHHHHHhhcc-ccccCChHHhhccCCEEEEEECHHHHHHHHHH
Confidence 47888888888888 4444221 22110 0011 1222 2 1222 59999999999999877665
No 437
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=24.47 E-value=37 Score=30.79 Aligned_cols=63 Identities=14% Similarity=0.029 Sum_probs=40.9
Q ss_pred CCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHHH-hCCCCcccccccCCCchhhhHHHHHHHHHHhhhcC
Q 019274 262 SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY-LGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQ 334 (343)
Q Consensus 262 ~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (343)
+.+=++.+|..++ ||| .+....+.|=+.|.+..... ..+..-++.- =|+-|++.++-.+.++-
T Consensus 242 G~Dvil~aGGGi~-gHP-~G~~AGa~A~RqA~eA~~~g~~~l~eyAk~h--------~el~~al~~~~~~~~~~ 305 (309)
T PF00016_consen 242 GTDVILQAGGGIH-GHP-DGPAAGARAFRQAWEAAMAGRIPLEEYAKEH--------PELARALAKFCPDLDAA 305 (309)
T ss_dssp TSSSEEEESHHHH-TST-THHHHHHHHHHHHHHHHHHHHHTTHHHHHHH--------HHHHHHHHHHCHHHHHH
T ss_pred ccCcccccCCccc-ccc-cCCCCCccchHHHHHHHhhccccHHHHHHhC--------HHHHHHHHhcCHHHHHH
Confidence 4455899999998 899 46666667777777777766 3333322322 26777888776665543
No 438
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=23.32 E-value=1.1e+02 Score=26.19 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=29.4
Q ss_pred CCCCCeEEeeccccC--CCC-C-ccchHHHHHHHHHHHHHHHHhCC
Q 019274 261 TSFPNLFMAGDWITT--RHG-S-WSQERSYVTGLEAANRVVDYLGD 302 (343)
Q Consensus 261 ~~~~~L~laGd~~~~--g~~-~-~~~ega~~Sg~~aA~~il~~~~~ 302 (343)
..+||.+++|-.+.. |.+ + .+..+.+.||..||+++++.++.
T Consensus 274 evvpgMiv~GMEvaE~DGanRMGPTFGaMm~SG~kAaq~aLk~f~~ 319 (328)
T KOG2960|consen 274 EVVPGMIVAGMEVAELDGANRMGPTFGAMMLSGVKAAQQALKHFAA 319 (328)
T ss_pred hccCceEEeeeeeeeccCCcccCcchhhhhhcchhHHHHHHHHhcC
Confidence 357888888876641 211 0 34555678999999999998774
No 439
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=23.09 E-value=1.1e+02 Score=29.35 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=27.7
Q ss_pred CCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 260 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 260 ~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
++..+|+|.+||-+. +.+ ...-|...|..||..+..
T Consensus 294 ~ts~~~VyA~GD~~~-~~~--la~~A~~~g~~aa~~~~g 329 (458)
T PRK06912 294 QTNVPHIYACGDVIG-GIQ--LAHVAFHEGTTAALHASG 329 (458)
T ss_pred ecCCCCEEEEeecCC-Ccc--cHHHHHHHHHHHHHHHcC
Confidence 467899999999974 332 455688899999998864
No 440
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=22.82 E-value=1.1e+02 Score=25.11 Aligned_cols=49 Identities=22% Similarity=0.223 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHcCCeEEcceeeeE---E-EecCCCCeEEEEEECCeEEecCEEEEee
Q 019274 63 IFEPWMDSMRTRGCEFLDGRRVTD---F-IYDEERCCISDVVCGKETYSAGAVVLAV 115 (343)
Q Consensus 63 l~~~l~~~l~~~G~~i~~~~~V~~---I-~~~~~~g~v~~V~~~g~~~~ad~VV~a~ 115 (343)
=.+++++.++++|++-.++..-.. | ..+. .| +.....+.+.||.|++..
T Consensus 45 R~~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~--~R--~~v~~~GIy~ADVVLVPL 97 (178)
T PF02006_consen 45 RVEKIAELLREHGAEEVLGVNPDASERIPGLDH--ER--AKVSKEGIYSADVVLVPL 97 (178)
T ss_pred HHHHHHHHHHHcCCCEeeccCCcccccCCCCCC--cc--ceECcccceeccEEEecc
Confidence 468999999999998777764332 2 1122 22 112234588999998765
No 441
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=22.54 E-value=1e+02 Score=30.97 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=22.8
Q ss_pred CCCCCCCeEEeeccccCC-CCCccchHHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTR-HGSWSQERSYVTGLEAANRVVDY 299 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g-~~~~~~ega~~Sg~~aA~~il~~ 299 (343)
.+|.++|||.||+....+ |+ ...+++..|..++..+.+.
T Consensus 402 ~~T~i~gLyA~Ge~~~~~~h~--l~~nsl~eg~~ag~~a~~~ 441 (614)
T TIGR02061 402 RMTTVEGLFTCGDGVGASPHK--FSSGSFTEGRIAAKAAVRW 441 (614)
T ss_pred CccccCCEEeceecccCcchh--hHHhHHHHHHHHHHHHHHH
Confidence 357899999999975433 32 1223444555555554443
No 442
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=22.03 E-value=1.2e+02 Score=28.82 Aligned_cols=37 Identities=14% Similarity=-0.027 Sum_probs=27.8
Q ss_pred CCCCCCCeEEeeccccCCCCCccchHHHHHHHHHHHHHHH
Q 019274 259 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 298 (343)
Q Consensus 259 ~~~~~~~L~laGd~~~~g~~~~~~ega~~Sg~~aA~~il~ 298 (343)
.+|.++|+|.+||-+. ++. ...-|...|+.+++.|+.
T Consensus 280 ~~Ts~~~IyA~GD~~~-~~~--~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 280 LHTTADNIWAMGDVTG-GLQ--FTYISLDDYRIVRDELLG 316 (441)
T ss_pred cccCCCCEEEeeecCC-Ccc--chhHHHHHHHHHHHHHcC
Confidence 4567899999999975 332 445577888899988875
No 443
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=20.03 E-value=79 Score=24.28 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=29.1
Q ss_pred hHHHHHHHHHcCCeEEcceeeeEEEecCCCCeEEEEEEC---CeEEecCEEEEeeChhh
Q 019274 64 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KETYSAGAVVLAVGIST 119 (343)
Q Consensus 64 ~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~g~v~~V~~~---g~~~~ad~VV~a~p~~~ 119 (343)
.++|.+..++.|.+|+.+ .++ . .|+... .+.-.||.||++++...
T Consensus 21 AeaLe~~A~~~g~~IKVE-------TqG---s-~G~eN~LT~edI~~Ad~VI~AaD~~i 68 (122)
T COG1445 21 AEALEKAAKKLGVEIKVE-------TQG---A-VGIENRLTAEDIAAADVVILAADIEV 68 (122)
T ss_pred HHHHHHHHHHcCCeEEEE-------cCC---c-ccccCcCCHHHHHhCCEEEEEecccc
Confidence 467888888888886544 333 2 234322 23447999999998865
Done!