Query 019275
Match_columns 343
No_of_seqs 207 out of 1198
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:08:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13947 GUB_WAK_bind: Wall-as 99.9 6E-23 1.3E-27 166.2 10.6 102 46-151 1-106 (106)
2 PF14380 WAK_assoc: Wall-assoc 98.9 5.8E-10 1.3E-14 88.3 2.8 48 229-280 46-93 (94)
3 PF04478 Mid2: Mid2 like cell 96.5 0.0014 3E-08 55.8 2.2 24 297-320 48-71 (154)
4 PF08693 SKG6: Transmembrane a 96.1 0.0082 1.8E-07 39.5 3.4 32 294-325 8-40 (40)
5 PF08488 WAK: Wall-associated 95.9 0.015 3.3E-07 46.7 4.9 23 189-211 2-26 (103)
6 PF15102 TMEM154: TMEM154 prot 94.5 0.048 1E-06 46.2 3.9 40 298-337 58-98 (146)
7 PHA03099 epidermal growth fact 94.2 0.037 8E-07 45.6 2.7 30 261-290 55-84 (139)
8 PTZ00382 Variant-specific surf 93.6 0.07 1.5E-06 42.3 3.2 12 297-308 65-76 (96)
9 PF02439 Adeno_E3_CR2: Adenovi 88.4 0.04 8.6E-07 35.7 -2.5 29 296-325 5-34 (38)
10 PF01102 Glycophorin_A: Glycop 88.3 0.022 4.8E-07 47.0 -4.8 12 296-307 66-77 (122)
11 PF12662 cEGF: Complement Clr- 87.2 0.66 1.4E-05 27.1 2.3 20 272-291 1-24 (24)
12 PF12191 stn_TNFRSF12A: Tumour 86.1 0.21 4.6E-06 41.2 -0.2 34 297-331 78-111 (129)
13 PF04478 Mid2: Mid2 like cell 85.9 0.9 2E-05 38.9 3.5 31 295-326 50-80 (154)
14 PF08374 Protocadherin: Protoc 83.4 0.24 5.3E-06 44.5 -1.0 41 296-336 36-77 (221)
15 PF01034 Syndecan: Syndecan do 80.9 0.51 1.1E-05 34.3 0.1 24 297-322 12-35 (64)
16 PF01034 Syndecan: Syndecan do 80.0 0.51 1.1E-05 34.3 -0.2 33 296-329 7-39 (64)
17 PF12301 CD99L2: CD99 antigen 76.8 0.4 8.7E-06 41.9 -1.8 31 295-325 112-142 (169)
18 PF05454 DAG1: Dystroglycan (D 71.5 1.3 2.8E-05 42.1 0.0 19 308-326 157-175 (290)
19 PF06697 DUF1191: Protein of u 70.6 1.9 4.1E-05 40.6 0.9 23 297-319 213-235 (278)
20 PF13908 Shisa: Wnt and FGF in 70.3 3.5 7.6E-05 36.1 2.5 15 296-310 77-91 (179)
21 PHA03265 envelope glycoprotein 68.1 1.5 3.3E-05 42.3 -0.3 38 297-336 350-387 (402)
22 PF01299 Lamp: Lysosome-associ 67.1 2.2 4.8E-05 40.8 0.6 24 296-321 272-295 (306)
23 PF01299 Lamp: Lysosome-associ 64.5 2.3 4.9E-05 40.7 0.1 32 298-330 270-301 (306)
24 KOG1219 Uncharacterized conser 64.3 4.5 9.8E-05 48.0 2.4 25 260-286 3952-3976(4289)
25 PF12955 DUF3844: Domain of un 63.3 4.3 9.3E-05 32.5 1.5 22 259-280 16-40 (103)
26 PF01102 Glycophorin_A: Glycop 62.5 0.34 7.5E-06 40.0 -5.1 32 297-329 63-95 (122)
27 PF02480 Herpes_gE: Alphaherpe 62.4 2.5 5.4E-05 42.6 0.0 13 297-309 351-363 (439)
28 PF12768 Rax2: Cortical protei 62.2 2.5 5.4E-05 40.1 -0.1 44 297-340 228-273 (281)
29 PF14610 DUF4448: Protein of u 60.3 8.1 0.00018 34.2 2.9 17 296-312 157-173 (189)
30 PF06024 DUF912: Nucleopolyhed 58.4 7.4 0.00016 31.0 2.0 9 322-330 87-95 (101)
31 PF07213 DAP10: DAP10 membrane 58.3 2.5 5.5E-05 32.1 -0.6 33 297-329 33-67 (79)
32 TIGR01495 ETRAMP Plasmodium ri 53.8 4.5 9.8E-05 31.3 0.1 26 294-319 48-73 (85)
33 PF00008 EGF: EGF-like domain 52.6 8.1 0.00017 23.8 1.1 21 260-281 8-28 (32)
34 PF02009 Rifin_STEVOR: Rifin/s 49.3 1.1 2.4E-05 42.8 -4.8 8 313-320 272-279 (299)
35 PF14575 EphA2_TM: Ephrin type 49.2 1.3 2.8E-05 33.4 -3.5 10 302-311 5-14 (75)
36 PTZ00382 Variant-specific surf 48.9 21 0.00045 28.2 3.2 18 293-310 65-82 (96)
37 PF15345 TMEM51: Transmembrane 48.8 5.2 0.00011 36.6 -0.3 24 295-318 55-78 (233)
38 PF11770 GAPT: GRB2-binding ad 48.0 6.5 0.00014 33.5 0.2 14 309-322 20-33 (158)
39 PF06365 CD34_antigen: CD34/Po 47.7 15 0.00032 33.1 2.5 14 326-339 132-145 (202)
40 PF03918 CcmH: Cytochrome C bi 46.9 6.4 0.00014 33.7 0.0 33 307-340 108-140 (148)
41 PF05568 ASFV_J13L: African sw 46.9 3.2 7E-05 35.1 -1.8 21 310-330 41-61 (189)
42 cd00053 EGF Epidermal growth f 44.9 30 0.00066 20.4 3.0 21 260-282 10-30 (36)
43 PF15099 PIRT: Phosphoinositid 43.3 8.6 0.00019 31.8 0.2 16 314-329 96-113 (129)
44 PTZ00214 high cysteine membran 43.2 7.9 0.00017 42.1 -0.0 38 268-305 746-785 (800)
45 PF05337 CSF-1: Macrophage col 42.7 8.1 0.00018 36.3 0.0 20 310-329 237-256 (285)
46 PF14991 MLANA: Protein melan- 36.3 8.3 0.00018 31.3 -0.9 7 320-326 45-51 (118)
47 CHL00108 psbJ photosystem II p 35.8 22 0.00048 23.2 1.2 21 296-316 7-28 (40)
48 PF02430 AMA-1: Apical membran 35.8 12 0.00026 37.6 -0.0 17 259-280 395-411 (471)
49 PF14283 DUF4366: Domain of un 35.4 30 0.00066 31.5 2.5 18 313-330 172-189 (218)
50 PTZ00046 rifin; Provisional 34.9 3.9 8.5E-05 39.9 -3.5 19 18-36 1-19 (358)
51 TIGR01477 RIFIN variant surfac 34.3 4.1 8.8E-05 39.7 -3.5 19 18-36 1-19 (353)
52 smart00179 EGF_CA Calcium-bind 34.2 57 0.0012 19.9 3.0 21 260-282 13-33 (39)
53 PLN03150 hypothetical protein; 33.1 24 0.00053 37.2 1.7 9 300-308 546-554 (623)
54 PRK02565 photosystem II reacti 32.9 23 0.0005 23.0 0.9 22 296-317 6-28 (39)
55 PF04689 S1FA: DNA binding pro 32.4 15 0.00033 26.7 0.0 25 299-323 15-39 (69)
56 PF12259 DUF3609: Protein of u 31.9 32 0.0007 33.8 2.2 9 332-340 338-346 (361)
57 PHA02887 EGF-like protein; Pro 31.7 55 0.0012 26.9 3.1 28 261-288 96-123 (126)
58 PF07204 Orthoreo_P10: Orthore 31.2 5.6 0.00012 31.1 -2.5 9 311-319 53-61 (98)
59 PF05808 Podoplanin: Podoplani 30.1 17 0.00037 31.4 0.0 9 297-305 132-140 (162)
60 PF06084 Cytomega_TRL10: Cytom 29.8 84 0.0018 25.6 3.9 19 264-282 11-29 (150)
61 PF15330 SIT: SHP2-interacting 28.3 10 0.00023 30.6 -1.6 15 307-321 9-23 (107)
62 PF14610 DUF4448: Protein of u 27.2 30 0.00064 30.6 1.0 30 301-330 159-188 (189)
63 PF00558 Vpu: Vpu protein; In 26.3 16 0.00035 27.9 -0.7 14 317-330 26-39 (81)
64 cd00054 EGF_CA Calcium-binding 24.9 97 0.0021 18.4 2.9 24 261-286 14-37 (38)
65 PTZ00045 apical membrane antig 24.7 30 0.00064 35.9 0.5 16 259-280 469-484 (595)
66 PF12877 DUF3827: Domain of un 24.6 25 0.00054 36.9 0.0 19 294-312 266-284 (684)
67 smart00181 EGF Epidermal growt 23.5 1.1E+02 0.0023 18.3 2.9 18 263-282 12-29 (35)
68 PF14851 FAM176: FAM176 family 22.9 37 0.00081 29.2 0.8 28 299-326 26-53 (153)
69 PF02480 Herpes_gE: Alphaherpe 21.5 31 0.00067 34.9 0.0 18 295-312 353-370 (439)
70 PF07645 EGF_CA: Calcium-bindi 21.4 63 0.0014 20.9 1.5 20 260-281 14-33 (42)
71 PTZ00208 65 kDa invariant surf 21.3 28 0.00061 34.5 -0.3 30 297-326 385-415 (436)
72 PF03302 VSP: Giardia variant- 21.2 43 0.00094 33.3 1.0 10 297-306 366-375 (397)
73 KOG3637 Vitronectin receptor, 21.0 45 0.00099 37.4 1.1 22 57-80 625-649 (1030)
74 PF15102 TMEM154: TMEM154 prot 20.5 68 0.0015 27.4 1.8 34 299-332 56-90 (146)
75 PF07589 VPEP: PEP-CTERM motif 20.3 23 0.00049 20.8 -0.8 8 313-320 13-20 (25)
76 PF04971 Lysis_S: Lysis protei 20.3 23 0.0005 26.1 -0.9 9 321-329 55-63 (68)
No 1
>PF13947 GUB_WAK_bind: Wall-associated receptor kinase galacturonan-binding
Probab=99.89 E-value=6e-23 Score=166.19 Aligned_cols=102 Identities=35% Similarity=0.714 Sum_probs=82.9
Q ss_pred CCCCCCCCCCccCcCCCCCCCCCCC-CCCCeEEeeCCC-CceeEecCCCcEEEEEEEecCCeEEEecCcccccCCCCCCC
Q 019275 46 ASPCRTSCGDIPINYPFGIDDGCGN-PYYRHMLVCSDY-GKLELRTPSGRYPVRSISYSDPHILLADPFMWNCQDGDNFR 123 (343)
Q Consensus 46 ~~~C~~~CG~v~I~YPF~i~~~Cg~-p~~gF~L~C~~~-~~~~l~~~~~~~~V~~I~~~~~ti~v~~~~~~~C~~~~~~~ 123 (343)
+++|+++||+++|+||||++++|++ | +|+|+|+++ .++.|.+.++.|+|++|+|++++|+|.++..+.|.......
T Consensus 1 ~~~C~~~CGnv~IpYPFgi~~~C~~~~--~F~L~C~~~~~~~~l~l~~~~~~V~~I~~~~~~i~v~~~~~~~~~~~~~~~ 78 (106)
T PF13947_consen 1 KPGCPSSCGNVSIPYPFGIGPGCGRDP--GFELTCNNNTSPPKLLLSSGNYEVLSISYENGTIRVSDPISSNCYSSSSSN 78 (106)
T ss_pred CCCCCCccCCEeecCCCccCCCCCCCC--CcEEECCCCCCCceeEecCCcEEEEEEecCCCEEEEEeccccceecCCCCc
Confidence 4689999999999999999999999 5 999999976 35677777889999999999999999999887776653321
Q ss_pred C-CcceecCCCCCccccC-CCeEEEEcCCC
Q 019275 124 P-TRPFSLDTSTHFSLST-QNDYLFFNCSE 151 (343)
Q Consensus 124 ~-~~~~~l~~~~pF~~S~-~N~~~~~gC~~ 151 (343)
. ...++++ .||.+++ .|.++++||++
T Consensus 79 ~~~~~~~~~--~~~~~s~~~N~~~~~GC~t 106 (106)
T PF13947_consen 79 SSNSNLSLN--GPFFFSSSSNKFTVVGCNT 106 (106)
T ss_pred ccccEEeec--CCceEccCCcEEEEECCCC
Confidence 1 2234444 4888876 89999999974
No 2
>PF14380 WAK_assoc: Wall-associated receptor kinase C-terminal
Probab=98.92 E-value=5.8e-10 Score=88.28 Aligned_cols=48 Identities=25% Similarity=0.915 Sum_probs=42.6
Q ss_pred CCCCCCCCCceEEEEEcCCCCCChhhhhcCCCCceeeccCCCCCeEeeCCCC
Q 019275 229 PPYDQIPEYGIRVDFDIPVTTACLQCQDMTKGGGTCGFHTETQNFLCLCPKG 280 (343)
Q Consensus 229 ~~~~~~~~~gf~L~W~i~~~~~C~~C~~~~~sgg~Cg~~~~~~~~~C~C~~G 280 (343)
..|.++|++||+|+|.+. .++|.+|++ |||+|+|+.+...|.|+|+||
T Consensus 46 ~~~~~~L~~GF~L~w~~~-~~~C~~C~~---SgG~Cgy~~~~~~f~C~C~dg 93 (94)
T PF14380_consen 46 GNYEEVLKKGFELEWNAD-SGDCRECEA---SGGRCGYDSNSEQFTCFCSDG 93 (94)
T ss_pred hHHHHHHhcCcEEEEeCC-CCcCcChhc---CCCEeCCCCCCceEEEECCCC
Confidence 347888999999999973 469999995 799999999889999999998
No 3
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=96.55 E-value=0.0014 Score=55.75 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=15.4
Q ss_pred ceEEEeehhHHHHHHHHHheeeEE
Q 019275 297 AGVIAGTVTGVSAAGAIGIGAGVW 320 (343)
Q Consensus 297 ~~ii~g~~~g~~~l~~~~~~~~i~ 320 (343)
..||+|+++|+++++++++++++|
T Consensus 48 knIVIGvVVGVGg~ill~il~lvf 71 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLGILALVF 71 (154)
T ss_pred ccEEEEEEecccHHHHHHHHHhhe
Confidence 457788888777666655544444
No 4
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=96.07 E-value=0.0082 Score=39.48 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=18.6
Q ss_pred CccceEEEeehhHHHHHHH-HHheeeEEEEeec
Q 019275 294 HSRAGVIAGTVTGVSAAGA-IGIGAGVWYFRKV 325 (343)
Q Consensus 294 ~~~~~ii~g~~~g~~~l~~-~~~~~~i~~~r~r 325 (343)
++...|.+|+++.++++++ ++++.++||+|+|
T Consensus 8 ~~~vaIa~~VvVPV~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 8 SNTVAIAVGVVVPVGVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred CceEEEEEEEEechHHHHHHHHHHhheEEeccC
Confidence 3446677777776655444 4455556665543
No 5
>PF08488 WAK: Wall-associated kinase; InterPro: IPR013695 This domain is found together with the eukaryotic protein kinase domain IPR000719 from INTERPRO in plant wall-associated kinases (WAKs) and related proteins. WAKs are serine-threonine kinases which might be involved in signalling to the cytoplasm and are required for cell expansion []. ; GO: 0004674 protein serine/threonine kinase activity, 0016021 integral to membrane
Probab=95.88 E-value=0.015 Score=46.70 Aligned_cols=23 Identities=22% Similarity=0.593 Sum_probs=16.8
Q ss_pred CCCCCCcceee-ecCCC-ceeEEee
Q 019275 189 SALHGSSCCAY-YPKAT-ESLRLML 211 (343)
Q Consensus 189 ~~c~g~gCC~~-ip~~~-~~~~~~~ 211 (343)
..|+|.+|||+ ||.+. ..+.+.+
T Consensus 2 ~~CsG~~CCQt~iP~~~~qv~~~~i 26 (103)
T PF08488_consen 2 SSCSGIGCCQTSIPSGLLQVFNVTI 26 (103)
T ss_pred CccCCcceeccCCCCCCceEEEEEe
Confidence 46899999999 99864 4455443
No 6
>PF15102 TMEM154: TMEM154 protein family
Probab=94.45 E-value=0.048 Score=46.22 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=20.5
Q ss_pred eEEEeehhHHHHHHHHH-heeeEEEEeeccccccccccccc
Q 019275 298 GVIAGTVTGVSAAGAIG-IGAGVWYFRKVRATEPVTCGVQN 337 (343)
Q Consensus 298 ~ii~g~~~g~~~l~~~~-~~~~i~~~r~rrk~~~~~~~~~~ 337 (343)
.|++++...++++|++. ++..+.|||||.|+..+..|.|+
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~~~ss~gsq~ 98 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKRTKQEPSSQGSQS 98 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeecccCCCCccccccc
Confidence 34444442233333333 33444567777777766555554
No 7
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=94.23 E-value=0.037 Score=45.62 Aligned_cols=30 Identities=20% Similarity=0.540 Sum_probs=25.3
Q ss_pred CceeeccCCCCCeEeeCCCCCCCCCCCcCC
Q 019275 261 GGTCGFHTETQNFLCLCPKGNATSYCKDHE 290 (343)
Q Consensus 261 gg~Cg~~~~~~~~~C~C~~Gn~~~gC~~~~ 290 (343)
||.|.+-.+-..+.|.|..|+.-..|+..+
T Consensus 55 HG~C~yI~dl~~~~CrC~~GYtGeRCEh~d 84 (139)
T PHA03099 55 HGDCIHARDIDGMYCRCSHGYTGIRCQHVV 84 (139)
T ss_pred CCEEEeeccCCCceeECCCCccccccccee
Confidence 789999887789999999997766898654
No 8
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=93.61 E-value=0.07 Score=42.28 Aligned_cols=12 Identities=42% Similarity=0.601 Sum_probs=7.5
Q ss_pred ceEEEeehhHHH
Q 019275 297 AGVIAGTVTGVS 308 (343)
Q Consensus 297 ~~ii~g~~~g~~ 308 (343)
.+.|+|+++|+.
T Consensus 65 ~gaiagi~vg~~ 76 (96)
T PTZ00382 65 TGAIAGISVAVV 76 (96)
T ss_pred cccEEEEEeehh
Confidence 556777766544
No 9
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=88.44 E-value=0.04 Score=35.69 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=15.1
Q ss_pred cceEEEeehhHHHHHHHHHheeeEE-EEeec
Q 019275 296 RAGVIAGTVTGVSAAGAIGIGAGVW-YFRKV 325 (343)
Q Consensus 296 ~~~ii~g~~~g~~~l~~~~~~~~i~-~~r~r 325 (343)
.+.||+|+++|.+.+++ ++..+.+ |||.|
T Consensus 5 ~IaIIv~V~vg~~iiii-~~~~YaCcykk~~ 34 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIII-CMFYYACCYKKHR 34 (38)
T ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHHHcccc
Confidence 46677777776544443 3334333 44333
No 10
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=88.30 E-value=0.022 Score=47.05 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=6.2
Q ss_pred cceEEEeehhHH
Q 019275 296 RAGVIAGTVTGV 307 (343)
Q Consensus 296 ~~~ii~g~~~g~ 307 (343)
.+.||.|+++|+
T Consensus 66 i~~Ii~gv~aGv 77 (122)
T PF01102_consen 66 IIGIIFGVMAGV 77 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeehhHHHHHHH
Confidence 355555555543
No 11
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=87.21 E-value=0.66 Score=27.11 Aligned_cols=20 Identities=30% Similarity=0.826 Sum_probs=15.2
Q ss_pred CeEeeCCCCCC----CCCCCcCCC
Q 019275 272 NFLCLCPKGNA----TSYCKDHEI 291 (343)
Q Consensus 272 ~~~C~C~~Gn~----~~gC~~~~~ 291 (343)
+|.|.|+.|+. ...|.||+.
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 48999999943 456998863
No 12
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=86.07 E-value=0.21 Score=41.15 Aligned_cols=34 Identities=15% Similarity=-0.040 Sum_probs=0.4
Q ss_pred ceEEEeehhHHHHHHHHHheeeEEEEeeccccccc
Q 019275 297 AGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATEPV 331 (343)
Q Consensus 297 ~~ii~g~~~g~~~l~~~~~~~~i~~~r~rrk~~~~ 331 (343)
+..|.|.+.++ ++++..+..+++++|.|||+|..
T Consensus 78 ~~pi~~sal~v-~lVl~llsg~lv~rrcrrr~~~t 111 (129)
T PF12191_consen 78 LWPILGSALSV-VLVLALLSGFLVWRRCRRREKFT 111 (129)
T ss_dssp S----------------------------------
T ss_pred ehhhhhhHHHH-HHHHHHHHHHHHHhhhhccccCC
Confidence 33344444332 23333344566677777777653
No 13
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=85.92 E-value=0.9 Score=38.86 Aligned_cols=31 Identities=19% Similarity=0.086 Sum_probs=22.4
Q ss_pred ccceEEEeehhHHHHHHHHHheeeEEEEeecc
Q 019275 295 SRAGVIAGTVTGVSAAGAIGIGAGVWYFRKVR 326 (343)
Q Consensus 295 ~~~~ii~g~~~g~~~l~~~~~~~~i~~~r~rr 326 (343)
-.+++++|+.+ +.+|++++++++++++|||.
T Consensus 50 IVIGvVVGVGg-~ill~il~lvf~~c~r~kkt 80 (154)
T PF04478_consen 50 IVIGVVVGVGG-PILLGILALVFIFCIRRKKT 80 (154)
T ss_pred EEEEEEecccH-HHHHHHHHhheeEEEecccC
Confidence 45999999876 55677777778888655543
No 14
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=83.42 E-value=0.24 Score=44.54 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=23.0
Q ss_pred cceEEEeehhHHHHHHHHHheeeEEE-Eeecccccccccccc
Q 019275 296 RAGVIAGTVTGVSAAGAIGIGAGVWY-FRKVRATEPVTCGVQ 336 (343)
Q Consensus 296 ~~~ii~g~~~g~~~l~~~~~~~~i~~-~r~rrk~~~~~~~~~ 336 (343)
..+|++|+++|+..++|+++++.+++ .|++..++...+|=|
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~~k~g~QagKq 77 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVRYCRQSPHKKGYQAGKQ 77 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHHHHhhccccchhhhccc
Confidence 46778888777666666555555553 233333444444544
No 15
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=80.89 E-value=0.51 Score=34.29 Aligned_cols=24 Identities=42% Similarity=0.308 Sum_probs=0.0
Q ss_pred ceEEEeehhHHHHHHHHHheeeEEEE
Q 019275 297 AGVIAGTVTGVSAAGAIGIGAGVWYF 322 (343)
Q Consensus 297 ~~ii~g~~~g~~~l~~~~~~~~i~~~ 322 (343)
+++|+|+++|+ ++.+.++.|++|+
T Consensus 12 aavIaG~Vvgl--l~ailLIlf~iyR 35 (64)
T PF01034_consen 12 AAVIAGGVVGL--LFAILLILFLIYR 35 (64)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 45566655543 2223334455553
No 16
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=80.03 E-value=0.51 Score=34.33 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=0.5
Q ss_pred cceEEEeehhHHHHHHHHHheeeEEEEeeccccc
Q 019275 296 RAGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATE 329 (343)
Q Consensus 296 ~~~ii~g~~~g~~~l~~~~~~~~i~~~r~rrk~~ 329 (343)
+..+++|+++| +++.++.+++++.+.--|-|++
T Consensus 7 ~~~vlaavIaG-~Vvgll~ailLIlf~iyR~rkk 39 (64)
T PF01034_consen 7 RSEVLAAVIAG-GVVGLLFAILLILFLIYRMRKK 39 (64)
T ss_dssp -------------------------------S--
T ss_pred cchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 34577777765 3466666677777778885554
No 17
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=76.83 E-value=0.4 Score=41.91 Aligned_cols=31 Identities=32% Similarity=0.371 Sum_probs=23.8
Q ss_pred ccceEEEeehhHHHHHHHHHheeeEEEEeec
Q 019275 295 SRAGVIAGTVTGVSAAGAIGIGAGVWYFRKV 325 (343)
Q Consensus 295 ~~~~ii~g~~~g~~~l~~~~~~~~i~~~r~r 325 (343)
...++|+|||.+++++|+-.+..+|.|.+||
T Consensus 112 ~~~g~IaGIvsav~valvGAvsSyiaYqkKK 142 (169)
T PF12301_consen 112 AEAGTIAGIVSAVVVALVGAVSSYIAYQKKK 142 (169)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4477899999888878877777888886554
No 18
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=71.46 E-value=1.3 Score=42.12 Aligned_cols=19 Identities=32% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHheeeEEEEeecc
Q 019275 308 SAAGAIGIGAGVWYFRKVR 326 (343)
Q Consensus 308 ~~l~~~~~~~~i~~~r~rr 326 (343)
++||+++++++++|+|||+
T Consensus 157 ~iLLIA~iIa~icyrrkR~ 175 (290)
T PF05454_consen 157 AILLIAGIIACICYRRKRK 175 (290)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHhhhhhhc
Confidence 4466677777777754433
No 19
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=70.60 E-value=1.9 Score=40.64 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=15.0
Q ss_pred ceEEEeehhHHHHHHHHHheeeE
Q 019275 297 AGVIAGTVTGVSAAGAIGIGAGV 319 (343)
Q Consensus 297 ~~ii~g~~~g~~~l~~~~~~~~i 319 (343)
-++|+|+++|+++|.+++++++.
T Consensus 213 W~iv~g~~~G~~~L~ll~~lv~~ 235 (278)
T PF06697_consen 213 WKIVVGVVGGVVLLGLLSLLVAM 235 (278)
T ss_pred EEEEEEehHHHHHHHHHHHHHHh
Confidence 44677888887776666554443
No 20
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=70.31 E-value=3.5 Score=36.15 Aligned_cols=15 Identities=40% Similarity=0.689 Sum_probs=9.6
Q ss_pred cceEEEeehhHHHHH
Q 019275 296 RAGVIAGTVTGVSAA 310 (343)
Q Consensus 296 ~~~ii~g~~~g~~~l 310 (343)
++.||+|+++|++++
T Consensus 77 ~~~iivgvi~~Vi~I 91 (179)
T PF13908_consen 77 ITGIIVGVICGVIAI 91 (179)
T ss_pred eeeeeeehhhHHHHH
Confidence 456777777765544
No 21
>PHA03265 envelope glycoprotein D; Provisional
Probab=68.12 E-value=1.5 Score=42.34 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=25.3
Q ss_pred ceEEEeehhHHHHHHHHHheeeEEEEeecccccccccccc
Q 019275 297 AGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATEPVTCGVQ 336 (343)
Q Consensus 297 ~~ii~g~~~g~~~l~~~~~~~~i~~~r~rrk~~~~~~~~~ 336 (343)
+++++|.. ++.|+++|++.+++.+|||..+|...+|.-
T Consensus 350 ~g~~ig~~--i~glv~vg~il~~~~rr~k~~~k~~~~~~~ 387 (402)
T PHA03265 350 VGISVGLG--IAGLVLVGVILYVCLRRKKELKKSAQNGLT 387 (402)
T ss_pred cceEEccc--hhhhhhhhHHHHHHhhhhhhhhhhhhcCCh
Confidence 66666543 455777887777766677777777666654
No 22
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=67.07 E-value=2.2 Score=40.76 Aligned_cols=24 Identities=13% Similarity=-0.080 Sum_probs=11.2
Q ss_pred cceEEEeehhHHHHHHHHHheeeEEE
Q 019275 296 RAGVIAGTVTGVSAAGAIGIGAGVWY 321 (343)
Q Consensus 296 ~~~ii~g~~~g~~~l~~~~~~~~i~~ 321 (343)
.++||+|+++ ++|+++.++++++.
T Consensus 272 ~vPIaVG~~L--a~lvlivLiaYli~ 295 (306)
T PF01299_consen 272 LVPIAVGAAL--AGLVLIVLIAYLIG 295 (306)
T ss_pred hHHHHHHHHH--HHHHHHHHHhheeE
Confidence 3556655543 23344444444443
No 23
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=64.50 E-value=2.3 Score=40.73 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=24.9
Q ss_pred eEEEeehhHHHHHHHHHheeeEEEEeecccccc
Q 019275 298 GVIAGTVTGVSAAGAIGIGAGVWYFRKVRATEP 330 (343)
Q Consensus 298 ~ii~g~~~g~~~l~~~~~~~~i~~~r~rrk~~~ 330 (343)
.+++-+|+| ++|+.+.+++++.|.-.|||+.+
T Consensus 270 ~~~vPIaVG-~~La~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 270 SDLVPIAVG-AALAGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred cchHHHHHH-HHHHHHHHHHHHhheeEeccccc
Confidence 777777764 55666778888899999988776
No 24
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=64.33 E-value=4.5 Score=48.04 Aligned_cols=25 Identities=32% Similarity=0.658 Sum_probs=16.7
Q ss_pred CCceeeccCCCCCeEeeCCCCCCCCCC
Q 019275 260 GGGTCGFHTETQNFLCLCPKGNATSYC 286 (343)
Q Consensus 260 sgg~Cg~~~~~~~~~C~C~~Gn~~~gC 286 (343)
.||.|..-. +.|.|+|..|....+|
T Consensus 3952 ~gg~C~n~~--gsf~CncT~g~~gr~c 3976 (4289)
T KOG1219|consen 3952 TGGQCINIP--GSFHCNCTPGILGRTC 3976 (4289)
T ss_pred CCceeeccC--CceEeccChhHhcccC
Confidence 377776642 4599999998553345
No 25
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=63.27 E-value=4.3 Score=32.53 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=16.4
Q ss_pred CCCceeeccCCC---CCeEeeCCCC
Q 019275 259 KGGGTCGFHTET---QNFLCLCPKG 280 (343)
Q Consensus 259 ~sgg~Cg~~~~~---~~~~C~C~~G 280 (343)
+++|+|...... .=|.|.|...
T Consensus 16 sgHG~C~~~~~~~~~~C~~C~C~~T 40 (103)
T PF12955_consen 16 SGHGSCVKKYGSGGGDCFACKCKPT 40 (103)
T ss_pred CCCceEeeccCCCccceEEEEeecc
Confidence 469999876432 4599999986
No 26
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=62.51 E-value=0.34 Score=40.04 Aligned_cols=32 Identities=28% Similarity=0.291 Sum_probs=16.7
Q ss_pred ceEEEeehhHHHHHHHHHheeeEEE-Eeeccccc
Q 019275 297 AGVIAGTVTGVSAAGAIGIGAGVWY-FRKVRATE 329 (343)
Q Consensus 297 ~~ii~g~~~g~~~l~~~~~~~~i~~-~r~rrk~~ 329 (343)
.+.|+|+++|+.+-+++.| ++++| +|||||+.
T Consensus 63 ~~~i~~Ii~gv~aGvIg~I-lli~y~irR~~Kk~ 95 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGII-LLISYCIRRLRKKS 95 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHH-HHHHHHHHHHS---
T ss_pred ccceeehhHHHHHHHHHHH-HHHHHHHHHHhccC
Confidence 5678888888766555433 34433 45555543
No 27
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=62.41 E-value=2.5 Score=42.63 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=0.0
Q ss_pred ceEEEeehhHHHH
Q 019275 297 AGVIAGTVTGVSA 309 (343)
Q Consensus 297 ~~ii~g~~~g~~~ 309 (343)
..+++++++|+++
T Consensus 351 ~~~~l~vVlgvav 363 (439)
T PF02480_consen 351 GAALLGVVLGVAV 363 (439)
T ss_dssp -------------
T ss_pred ccchHHHHHHHHH
Confidence 3344444433333
No 28
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=62.20 E-value=2.5 Score=40.09 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=24.9
Q ss_pred ceEEEeehhHHHHHHHHHheeeEEEE--eecccccccccccccCCC
Q 019275 297 AGVIAGTVTGVSAAGAIGIGAGVWYF--RKVRATEPVTCGVQNNEN 340 (343)
Q Consensus 297 ~~ii~g~~~g~~~l~~~~~~~~i~~~--r~rrk~~~~~~~~~~~~~ 340 (343)
+-|.++.+++++.+++++++.+++.+ |||.+...+|-.-+-+|+
T Consensus 228 ~VVlIslAiALG~v~ll~l~Gii~~~~~r~~~~~~~~p~~~~~d~~ 273 (281)
T PF12768_consen 228 FVVLISLAIALGTVFLLVLIGIILAYIRRRRQGYVPAPTSPRIDED 273 (281)
T ss_pred EEEEEehHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccccCcc
Confidence 44566667777777777776666643 333344445554344554
No 29
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=60.29 E-value=8.1 Score=34.18 Aligned_cols=17 Identities=6% Similarity=-0.078 Sum_probs=8.0
Q ss_pred cceEEEeehhHHHHHHH
Q 019275 296 RAGVIAGTVTGVSAAGA 312 (343)
Q Consensus 296 ~~~ii~g~~~g~~~l~~ 312 (343)
++.+++++-+.++++++
T Consensus 157 ~~~laI~lPvvv~~~~~ 173 (189)
T PF14610_consen 157 KYALAIALPVVVVVLAL 173 (189)
T ss_pred ceeEEEEccHHHHHHHH
Confidence 45566665443333333
No 30
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=58.35 E-value=7.4 Score=31.01 Aligned_cols=9 Identities=11% Similarity=0.183 Sum_probs=4.9
Q ss_pred Eeecccccc
Q 019275 322 FRKVRATEP 330 (343)
Q Consensus 322 ~r~rrk~~~ 330 (343)
.|.|+|+.+
T Consensus 87 LRer~~~~~ 95 (101)
T PF06024_consen 87 LRERQKSIR 95 (101)
T ss_pred Eeccccccc
Confidence 455555554
No 31
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=58.28 E-value=2.5 Score=32.05 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=15.2
Q ss_pred ceEEEeehhHHHHHHHHHh-eeeEE-EEeeccccc
Q 019275 297 AGVIAGTVTGVSAAGAIGI-GAGVW-YFRKVRATE 329 (343)
Q Consensus 297 ~~ii~g~~~g~~~l~~~~~-~~~i~-~~r~rrk~~ 329 (343)
.++.+|+++|=+++-++++ ++|.+ ..|||++|+
T Consensus 33 ~g~LaGiV~~D~vlTLLIv~~vy~car~r~r~~~~ 67 (79)
T PF07213_consen 33 PGLLAGIVAADAVLTLLIVLVVYYCARPRRRPTQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccc
Confidence 3567777766333333222 22333 345555554
No 32
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=53.79 E-value=4.5 Score=31.29 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=14.0
Q ss_pred CccceEEEeehhHHHHHHHHHheeeE
Q 019275 294 HSRAGVIAGTVTGVSAAGAIGIGAGV 319 (343)
Q Consensus 294 ~~~~~ii~g~~~g~~~l~~~~~~~~i 319 (343)
++|+.++.++++|+++++..+++..+
T Consensus 48 nkK~i~iS~ias~la~lv~t~~G~g~ 73 (85)
T TIGR01495 48 NKKIILYSSIASGLALLVGAGVGLGY 73 (85)
T ss_pred cCceeehHHHHHHHHHHHHHHHHHhh
Confidence 34566677777665555444444333
No 33
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=52.62 E-value=8.1 Score=23.84 Aligned_cols=21 Identities=38% Similarity=0.814 Sum_probs=17.5
Q ss_pred CCceeeccCCCCCeEeeCCCCC
Q 019275 260 GGGTCGFHTETQNFLCLCPKGN 281 (343)
Q Consensus 260 sgg~Cg~~~~~~~~~C~C~~Gn 281 (343)
.+|+|.... ..+|.|.|..|+
T Consensus 8 n~g~C~~~~-~~~y~C~C~~G~ 28 (32)
T PF00008_consen 8 NGGTCIDLP-GGGYTCECPPGY 28 (32)
T ss_dssp TTEEEEEES-TSEEEEEEBTTE
T ss_pred CCeEEEeCC-CCCEEeECCCCC
Confidence 489999876 578999999883
No 34
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=49.25 E-value=1.1 Score=42.84 Aligned_cols=8 Identities=13% Similarity=-0.226 Sum_probs=3.8
Q ss_pred HHheeeEE
Q 019275 313 IGIGAGVW 320 (343)
Q Consensus 313 ~~~~~~i~ 320 (343)
+.|+.+||
T Consensus 272 MvIIYLIL 279 (299)
T PF02009_consen 272 MVIIYLIL 279 (299)
T ss_pred HHHHHHHH
Confidence 44444555
No 35
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=49.18 E-value=1.3 Score=33.39 Aligned_cols=10 Identities=20% Similarity=0.135 Sum_probs=4.0
Q ss_pred eehhHHHHHH
Q 019275 302 GTVTGVSAAG 311 (343)
Q Consensus 302 g~~~g~~~l~ 311 (343)
++++|+.+++
T Consensus 5 ~~~~g~~~ll 14 (75)
T PF14575_consen 5 SIIVGVLLLL 14 (75)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3444433333
No 36
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=48.85 E-value=21 Score=28.20 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=11.0
Q ss_pred CCccceEEEeehhHHHHH
Q 019275 293 GHSRAGVIAGTVTGVSAA 310 (343)
Q Consensus 293 ~~~~~~ii~g~~~g~~~l 310 (343)
.....+|.+|+++.+++|
T Consensus 65 ~gaiagi~vg~~~~v~~l 82 (96)
T PTZ00382 65 TGAIAGISVAVVAVVGGL 82 (96)
T ss_pred cccEEEEEeehhhHHHHH
Confidence 345677888776655433
No 37
>PF15345 TMEM51: Transmembrane protein 51
Probab=48.82 E-value=5.2 Score=36.61 Aligned_cols=24 Identities=17% Similarity=-0.085 Sum_probs=12.3
Q ss_pred ccceEEEeehhHHHHHHHHHheee
Q 019275 295 SRAGVIAGTVTGVSAAGAIGIGAG 318 (343)
Q Consensus 295 ~~~~ii~g~~~g~~~l~~~~~~~~ 318 (343)
+|.-.++=+.+|+++++++.-+++
T Consensus 55 sKt~SVAyVLVG~Gv~LLLLSICL 78 (233)
T PF15345_consen 55 SKTFSVAYVLVGSGVALLLLSICL 78 (233)
T ss_pred ceeEEEEEehhhHHHHHHHHHHHH
Confidence 444455555556555555444444
No 38
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=47.98 E-value=6.5 Score=33.51 Aligned_cols=14 Identities=14% Similarity=0.033 Sum_probs=9.2
Q ss_pred HHHHHHheeeEEEE
Q 019275 309 AAGAIGIGAGVWYF 322 (343)
Q Consensus 309 ~l~~~~~~~~i~~~ 322 (343)
+||+++.+.++||+
T Consensus 20 ~lLl~cgiGcvwhw 33 (158)
T PF11770_consen 20 LLLLLCGIGCVWHW 33 (158)
T ss_pred HHHHHHhcceEEEe
Confidence 34556667788884
No 39
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=47.75 E-value=15 Score=33.10 Aligned_cols=14 Identities=7% Similarity=0.024 Sum_probs=5.7
Q ss_pred ccccccccccccCC
Q 019275 326 RATEPVTCGVQNNE 339 (343)
Q Consensus 326 rk~~~~~~~~~~~~ 339 (343)
+|+.+..--.|.-|
T Consensus 132 ~~~~rl~Ee~~~vE 145 (202)
T PF06365_consen 132 KKGQRLGEELYTVE 145 (202)
T ss_pred cchhhhccCceecc
Confidence 34445433333333
No 40
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=46.91 E-value=6.4 Score=33.67 Aligned_cols=33 Identities=12% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHheeeEEEEeecccccccccccccCCC
Q 019275 307 VSAAGAIGIGAGVWYFRKVRATEPVTCGVQNNEN 340 (343)
Q Consensus 307 ~~~l~~~~~~~~i~~~r~rrk~~~~~~~~~~~~~ 340 (343)
+.+++++|++.++.+.||+|+++.. ..+...|.
T Consensus 108 P~~~l~~g~~~~~~~~rr~~~~~~~-~~ls~~e~ 140 (148)
T PF03918_consen 108 PFLLLLLGGALLFRRLRRWRRRAAQ-EELSEEER 140 (148)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCC-CCCCHHHH
Confidence 3444555555555444555544433 44554443
No 41
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=46.89 E-value=3.2 Score=35.14 Aligned_cols=21 Identities=10% Similarity=-0.205 Sum_probs=10.1
Q ss_pred HHHHHheeeEEEEeecccccc
Q 019275 310 AGAIGIGAGVWYFRKVRATEP 330 (343)
Q Consensus 310 l~~~~~~~~i~~~r~rrk~~~ 330 (343)
+++++++...|+.+||||.+.
T Consensus 41 liiiiivli~lcssRKkKaaA 61 (189)
T PF05568_consen 41 LIIIIIVLIYLCSSRKKKAAA 61 (189)
T ss_pred HHHHHHHHHHHHhhhhHHHHh
Confidence 333333333455566666554
No 42
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=44.86 E-value=30 Score=20.41 Aligned_cols=21 Identities=38% Similarity=0.974 Sum_probs=16.3
Q ss_pred CCceeeccCCCCCeEeeCCCCCC
Q 019275 260 GGGTCGFHTETQNFLCLCPKGNA 282 (343)
Q Consensus 260 sgg~Cg~~~~~~~~~C~C~~Gn~ 282 (343)
.++.|.... .+|.|.|..|..
T Consensus 10 ~~~~C~~~~--~~~~C~C~~g~~ 30 (36)
T cd00053 10 NGGTCVNTP--GSYRCVCPPGYT 30 (36)
T ss_pred CCCEEecCC--CCeEeECCCCCc
Confidence 468898754 579999999854
No 43
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=43.30 E-value=8.6 Score=31.85 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=6.6
Q ss_pred HheeeEEE--Eeeccccc
Q 019275 314 GIGAGVWY--FRKVRATE 329 (343)
Q Consensus 314 ~~~~~i~~--~r~rrk~~ 329 (343)
...++.|. +||||||+
T Consensus 96 ~~~alcW~~~~rkK~~kr 113 (129)
T PF15099_consen 96 ACSALCWKPIIRKKKKKR 113 (129)
T ss_pred HhhhheehhhhHhHHHHh
Confidence 33334454 34444333
No 44
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=43.18 E-value=7.9 Score=42.06 Aligned_cols=38 Identities=18% Similarity=0.413 Sum_probs=22.0
Q ss_pred CCCCCeEeeCCCCC--CCCCCCcCCCCCCccceEEEeehh
Q 019275 268 TETQNFLCLCPKGN--ATSYCKDHEISGHSRAGVIAGTVT 305 (343)
Q Consensus 268 ~~~~~~~C~C~~Gn--~~~gC~~~~~~~~~~~~ii~g~~~ 305 (343)
....+.+|.|.+|+ ..+.|...+.........|+|+++
T Consensus 746 ~~~~~~vC~C~~g~~l~~~~c~~~~~~~~~~~~~i~~~~v 785 (800)
T PTZ00214 746 ASSNQGVCMCELDAVLTKGVCVPAKELAKKRTAAIAGGTV 785 (800)
T ss_pred ccccCCeEEeCCcceecCCeeEecccccccccceeEEEEE
Confidence 33457899999993 355686443322233455666544
No 45
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=42.74 E-value=8.1 Score=36.28 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=0.0
Q ss_pred HHHHHheeeEEEEeeccccc
Q 019275 310 AGAIGIGAGVWYFRKVRATE 329 (343)
Q Consensus 310 l~~~~~~~~i~~~r~rrk~~ 329 (343)
|+++.++.++||+||||...
T Consensus 237 LVLLaVGGLLfYr~rrRs~~ 256 (285)
T PF05337_consen 237 LVLLAVGGLLFYRRRRRSHR 256 (285)
T ss_dssp --------------------
T ss_pred hhhhhccceeeecccccccc
Confidence 45566778899987776544
No 46
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=36.29 E-value=8.3 Score=31.31 Aligned_cols=7 Identities=29% Similarity=1.160 Sum_probs=0.0
Q ss_pred EEEeecc
Q 019275 320 WYFRKVR 326 (343)
Q Consensus 320 ~~~r~rr 326 (343)
||-|||.
T Consensus 45 WYckRRS 51 (118)
T PF14991_consen 45 WYCKRRS 51 (118)
T ss_dssp -------
T ss_pred eeeeecc
Confidence 5544443
No 47
>CHL00108 psbJ photosystem II protein J
Probab=35.84 E-value=22 Score=23.23 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=12.1
Q ss_pred cceE-EEeehhHHHHHHHHHhe
Q 019275 296 RAGV-IAGTVTGVSAAGAIGIG 316 (343)
Q Consensus 296 ~~~i-i~g~~~g~~~l~~~~~~ 316 (343)
++++ ++|+++|.+++.+++++
T Consensus 7 RiPLWlVgtv~G~~vi~~vgiF 28 (40)
T CHL00108 7 RIPLWLIGTVAGIAVIGLLGIF 28 (40)
T ss_pred cccEEeeeehhhHhHHheeeeE
Confidence 3454 67788776555444443
No 48
>PF02430 AMA-1: Apical membrane antigen 1; InterPro: IPR003298 A novel antigen of Plasmodium falciparum has been cloned that contains a hydrophobic domain typical of an integral membrane protein. The antigen is designated apical membrane antigen 1 (AMA-1) by virtue of appearing to be located in the apical complex []. AMA-1 appears to be transported to the merozoite surface close to the time of schizont rupture. The 66kDa merozoite surface antigen (PK66) of Plasmodium knowlesi, a simian malaria, possesses vaccine-related properties believed to originate from a receptor-like role in parasite invasion of erythrocytes []. The sequence of PK66 is conserved throughout plasmodium, and shows high similarity to P. falciparum AMA-1. Following schizont rupture, the distribution of PK66 changes in a coordinate manner associated with merozoite invasion. Prior to rupture, the protein is concentrated at the apical end, following which it distributes itself entirely across the surface of the free merozoite. Immunofluorescence studies suggest that, during invasion, PK66 is excluded from the erythrocyte at, and behind, the invasion interface []. ; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2Y8R_D 2X2Z_A 2Y8T_A 2Y8S_D 1HN6_A 2Z8V_B 2Z8W_A 1Z40_E 2Q8B_A 2Q8A_A ....
Probab=35.82 E-value=12 Score=37.59 Aligned_cols=17 Identities=29% Similarity=0.911 Sum_probs=10.5
Q ss_pred CCCceeeccCCCCCeEeeCCCC
Q 019275 259 KGGGTCGFHTETQNFLCLCPKG 280 (343)
Q Consensus 259 ~sgg~Cg~~~~~~~~~C~C~~G 280 (343)
.+++.|+- -|.|.|-+-
T Consensus 395 ~~~~sC~~-----~y~C~~~~~ 411 (471)
T PF02430_consen 395 KSSSSCGT-----YYVCSCVEK 411 (471)
T ss_dssp ECTSTTE------EEE--SBSS
T ss_pred hccccccc-----eEEeccccc
Confidence 36888872 389998776
No 49
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=35.42 E-value=30 Score=31.54 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=7.7
Q ss_pred HHheeeEEEEeecccccc
Q 019275 313 IGIGAGVWYFRKVRATEP 330 (343)
Q Consensus 313 ~~~~~~i~~~r~rrk~~~ 330 (343)
++.+++.+++.+|+|++.
T Consensus 172 ~gGGa~yYfK~~K~K~~~ 189 (218)
T PF14283_consen 172 IGGGAYYYFKFYKPKQEE 189 (218)
T ss_pred hhcceEEEEEEecccccc
Confidence 333444333444444443
No 50
>PTZ00046 rifin; Provisional
Probab=34.92 E-value=3.9 Score=39.88 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=9.3
Q ss_pred cchhhHHHHHHHHHHHHHH
Q 019275 18 SARSFYYHLHFLMLPLVFA 36 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~ 36 (343)
|-.-|+-.|+|.+-|=+|+
T Consensus 1 MKvHY~nILLF~lpLNILv 19 (358)
T PTZ00046 1 MKLHYINILLFALPLNILV 19 (358)
T ss_pred CchHHHHHHHHHhHHHHHH
Confidence 3344555555554444554
No 51
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=34.28 E-value=4.1 Score=39.68 Aligned_cols=19 Identities=11% Similarity=0.072 Sum_probs=8.8
Q ss_pred cchhhHHHHHHHHHHHHHH
Q 019275 18 SARSFYYHLHFLMLPLVFA 36 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~ 36 (343)
|-.-|+-.|+|.+-|=+|+
T Consensus 1 MKvHy~NILLF~lpLNILv 19 (353)
T TIGR01477 1 MKLHYINILLFSLPLNILV 19 (353)
T ss_pred CchHHHHHHHHHHHHHHHh
Confidence 3344555555544444444
No 52
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=34.16 E-value=57 Score=19.93 Aligned_cols=21 Identities=38% Similarity=0.899 Sum_probs=15.7
Q ss_pred CCceeeccCCCCCeEeeCCCCCC
Q 019275 260 GGGTCGFHTETQNFLCLCPKGNA 282 (343)
Q Consensus 260 sgg~Cg~~~~~~~~~C~C~~Gn~ 282 (343)
.++.|... .++|.|.|..|..
T Consensus 13 ~~~~C~~~--~g~~~C~C~~g~~ 33 (39)
T smart00179 13 NGGTCVNT--VGSYRCECPPGYT 33 (39)
T ss_pred CCCEeECC--CCCeEeECCCCCc
Confidence 36788764 3579999999854
No 53
>PLN03150 hypothetical protein; Provisional
Probab=33.07 E-value=24 Score=37.16 Aligned_cols=9 Identities=44% Similarity=0.490 Sum_probs=3.7
Q ss_pred EEeehhHHH
Q 019275 300 IAGTVTGVS 308 (343)
Q Consensus 300 i~g~~~g~~ 308 (343)
++++++|++
T Consensus 546 ~i~~~~~~~ 554 (623)
T PLN03150 546 KIGIAFGVS 554 (623)
T ss_pred EEEEEhHHH
Confidence 444444433
No 54
>PRK02565 photosystem II reaction center protein J; Provisional
Probab=32.93 E-value=23 Score=23.02 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=12.4
Q ss_pred cceE-EEeehhHHHHHHHHHhee
Q 019275 296 RAGV-IAGTVTGVSAAGAIGIGA 317 (343)
Q Consensus 296 ~~~i-i~g~~~g~~~l~~~~~~~ 317 (343)
++++ ++|+++|.+++.++++++
T Consensus 6 riPLWlV~tv~G~~vi~~vgiFf 28 (39)
T PRK02565 6 RIPLWLVATVAGMGVIFVVGLFF 28 (39)
T ss_pred ccceeehhhhhHHHHHhheeeEE
Confidence 3444 567777765555555433
No 55
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.43 E-value=15 Score=26.69 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=13.7
Q ss_pred EEEeehhHHHHHHHHHheeeEEEEe
Q 019275 299 VIAGTVTGVSAAGAIGIGAGVWYFR 323 (343)
Q Consensus 299 ii~g~~~g~~~l~~~~~~~~i~~~r 323 (343)
|+.-+++|++++++++.+++..|-+
T Consensus 15 IVLlvV~g~ll~flvGnyvlY~Yaq 39 (69)
T PF04689_consen 15 IVLLVVAGLLLVFLVGNYVLYVYAQ 39 (69)
T ss_pred EEeehHHHHHHHHHHHHHHHHHHHh
Confidence 4444555565566666655554543
No 56
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=31.91 E-value=32 Score=33.84 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=4.0
Q ss_pred ccccccCCC
Q 019275 332 TCGVQNNEN 340 (343)
Q Consensus 332 ~~~~~~~~~ 340 (343)
..+.|-+.|
T Consensus 338 ~~~~~~~~~ 346 (361)
T PF12259_consen 338 VDGLQDSKN 346 (361)
T ss_pred ccccccccc
Confidence 344454443
No 57
>PHA02887 EGF-like protein; Provisional
Probab=31.70 E-value=55 Score=26.86 Aligned_cols=28 Identities=25% Similarity=0.653 Sum_probs=23.6
Q ss_pred CceeeccCCCCCeEeeCCCCCCCCCCCc
Q 019275 261 GGTCGFHTETQNFLCLCPKGNATSYCKD 288 (343)
Q Consensus 261 gg~Cg~~~~~~~~~C~C~~Gn~~~gC~~ 288 (343)
+|+|.|-.+-....|.|..|+.-..|..
T Consensus 96 HG~C~yI~dL~epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 96 NGECMNIIDLDEKFCICNKGYTGIRCDE 123 (126)
T ss_pred CCEEEccccCCCceeECCCCcccCCCCc
Confidence 8999998887899999999976556764
No 58
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=31.20 E-value=5.6 Score=31.15 Aligned_cols=9 Identities=33% Similarity=-0.219 Sum_probs=3.2
Q ss_pred HHHHheeeE
Q 019275 311 GAIGIGAGV 319 (343)
Q Consensus 311 ~~~~~~~~i 319 (343)
+++++++++
T Consensus 53 LilIii~Lv 61 (98)
T PF07204_consen 53 LILIIIALV 61 (98)
T ss_pred hHHHHHHHH
Confidence 333333333
No 59
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=30.05 E-value=17 Score=31.43 Aligned_cols=9 Identities=33% Similarity=0.778 Sum_probs=0.0
Q ss_pred ceEEEeehh
Q 019275 297 AGVIAGTVT 305 (343)
Q Consensus 297 ~~ii~g~~~ 305 (343)
.+||+|+.+
T Consensus 132 VGIIVGVLl 140 (162)
T PF05808_consen 132 VGIIVGVLL 140 (162)
T ss_dssp ---------
T ss_pred eeehhhHHH
Confidence 344545443
No 60
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=29.79 E-value=84 Score=25.63 Aligned_cols=19 Identities=26% Similarity=0.641 Sum_probs=12.8
Q ss_pred eeccCCCCCeEeeCCCCCC
Q 019275 264 CGFHTETQNFLCLCPKGNA 282 (343)
Q Consensus 264 Cg~~~~~~~~~C~C~~Gn~ 282 (343)
|--.+......|+|+.-|+
T Consensus 11 c~~~~~~t~l~ckc~~~n~ 29 (150)
T PF06084_consen 11 CTSKSENTHLTCKCSPWNP 29 (150)
T ss_pred eEeccCCeeEEEecCCCCC
Confidence 4443444678899988866
No 61
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=28.26 E-value=10 Score=30.58 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=6.4
Q ss_pred HHHHHHHHheeeEEE
Q 019275 307 VSAAGAIGIGAGVWY 321 (343)
Q Consensus 307 ~~~l~~~~~~~~i~~ 321 (343)
++.++++++-.+.|.
T Consensus 9 llLll~l~asl~~wr 23 (107)
T PF15330_consen 9 LLLLLSLAASLLAWR 23 (107)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444453
No 62
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=27.21 E-value=30 Score=30.58 Aligned_cols=30 Identities=7% Similarity=-0.014 Sum_probs=14.8
Q ss_pred EeehhHHHHHHHHHheeeEEEEeecccccc
Q 019275 301 AGTVTGVSAAGAIGIGAGVWYFRKVRATEP 330 (343)
Q Consensus 301 ~g~~~g~~~l~~~~~~~~i~~~r~rrk~~~ 330 (343)
+..++-+.+++++++++++++.++||++++
T Consensus 159 ~laI~lPvvv~~~~~~~~~~~~~~R~~Rri 188 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIMYGFFFWNRKKRRI 188 (189)
T ss_pred eEEEEccHHHHHHHHHHHhhheeeccceec
Confidence 333333444555555555555555555543
No 63
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=26.30 E-value=16 Score=27.95 Aligned_cols=14 Identities=14% Similarity=0.034 Sum_probs=0.7
Q ss_pred eeEEEEeecccccc
Q 019275 317 AGVWYFRKVRATEP 330 (343)
Q Consensus 317 ~~i~~~r~rrk~~~ 330 (343)
+++-|++.||+++.
T Consensus 26 v~ieYrk~~rqrkI 39 (81)
T PF00558_consen 26 VYIEYRKIKRQRKI 39 (81)
T ss_dssp H------------C
T ss_pred HHHHHHHHHHHHhH
Confidence 34446555555553
No 64
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=24.88 E-value=97 Score=18.40 Aligned_cols=24 Identities=38% Similarity=0.913 Sum_probs=16.7
Q ss_pred CceeeccCCCCCeEeeCCCCCCCCCC
Q 019275 261 GGTCGFHTETQNFLCLCPKGNATSYC 286 (343)
Q Consensus 261 gg~Cg~~~~~~~~~C~C~~Gn~~~gC 286 (343)
++.|.... .+|.|.|..|.....|
T Consensus 14 ~~~C~~~~--~~~~C~C~~g~~g~~C 37 (38)
T cd00054 14 GGTCVNTV--GSYRCSCPPGYTGRNC 37 (38)
T ss_pred CCEeECCC--CCeEeECCCCCcCCcC
Confidence 67887643 5699999998543344
No 65
>PTZ00045 apical membrane antigen 1; Provisional
Probab=24.65 E-value=30 Score=35.94 Aligned_cols=16 Identities=25% Similarity=0.679 Sum_probs=10.6
Q ss_pred CCCceeeccCCCCCeEeeCCCC
Q 019275 259 KGGGTCGFHTETQNFLCLCPKG 280 (343)
Q Consensus 259 ~sgg~Cg~~~~~~~~~C~C~~G 280 (343)
.+++.|.+ |+|.|..-
T Consensus 469 ~~~~~C~~------yvc~~~~~ 484 (595)
T PTZ00045 469 VSNSTCSF------YVCERVEK 484 (595)
T ss_pred ccCcccce------eEeeeeec
Confidence 35677744 78888765
No 66
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=24.57 E-value=25 Score=36.92 Aligned_cols=19 Identities=21% Similarity=0.127 Sum_probs=12.8
Q ss_pred CccceEEEeehhHHHHHHH
Q 019275 294 HSRAGVIAGTVTGVSAAGA 312 (343)
Q Consensus 294 ~~~~~ii~g~~~g~~~l~~ 312 (343)
.+++.||+|+++-++++++
T Consensus 266 ~~NlWII~gVlvPv~vV~~ 284 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLL 284 (684)
T ss_pred CCCeEEEehHhHHHHHHHH
Confidence 4569999999765444333
No 67
>smart00181 EGF Epidermal growth factor-like domain.
Probab=23.48 E-value=1.1e+02 Score=18.32 Aligned_cols=18 Identities=33% Similarity=0.807 Sum_probs=14.3
Q ss_pred eeeccCCCCCeEeeCCCCCC
Q 019275 263 TCGFHTETQNFLCLCPKGNA 282 (343)
Q Consensus 263 ~Cg~~~~~~~~~C~C~~Gn~ 282 (343)
.|... ..+|.|.|..|..
T Consensus 12 ~C~~~--~~~~~C~C~~g~~ 29 (35)
T smart00181 12 TCINT--PGSYTCSCPPGYT 29 (35)
T ss_pred EEECC--CCCeEeECCCCCc
Confidence 88765 5689999999954
No 68
>PF14851 FAM176: FAM176 family
Probab=22.91 E-value=37 Score=29.21 Aligned_cols=28 Identities=14% Similarity=0.018 Sum_probs=13.4
Q ss_pred EEEeehhHHHHHHHHHheeeEEEEeecc
Q 019275 299 VIAGTVTGVSAAGAIGIGAGVWYFRKVR 326 (343)
Q Consensus 299 ii~g~~~g~~~l~~~~~~~~i~~~r~rr 326 (343)
.+.||.+|+.+.|.+.++-+.+..||+.
T Consensus 26 Fv~gVC~GLlLtLcllV~risc~~r~~~ 53 (153)
T PF14851_consen 26 FVSGVCAGLLLTLCLLVIRISCRPRKRC 53 (153)
T ss_pred HHHHHHHHHHHHHHHHHhhheeeccccc
Confidence 3567776654444333333445334333
No 69
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.55 E-value=31 Score=34.88 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=0.0
Q ss_pred ccceEEEeehhHHHHHHH
Q 019275 295 SRAGVIAGTVTGVSAAGA 312 (343)
Q Consensus 295 ~~~~ii~g~~~g~~~l~~ 312 (343)
..+.+++|++++++++++
T Consensus 353 ~~l~vVlgvavlivVv~v 370 (439)
T PF02480_consen 353 ALLGVVLGVAVLIVVVGV 370 (439)
T ss_dssp ------------------
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 445566666665554444
No 70
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=21.41 E-value=63 Score=20.94 Aligned_cols=20 Identities=35% Similarity=0.823 Sum_probs=15.9
Q ss_pred CCceeeccCCCCCeEeeCCCCC
Q 019275 260 GGGTCGFHTETQNFLCLCPKGN 281 (343)
Q Consensus 260 sgg~Cg~~~~~~~~~C~C~~Gn 281 (343)
.++.|.+. .++|.|.|+.|+
T Consensus 14 ~~~~C~N~--~Gsy~C~C~~Gy 33 (42)
T PF07645_consen 14 ENGTCVNT--EGSYSCSCPPGY 33 (42)
T ss_dssp TTSEEEEE--TTEEEEEESTTE
T ss_pred CCCEEEcC--CCCEEeeCCCCc
Confidence 47888774 468999999993
No 71
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=21.32 E-value=28 Score=34.50 Aligned_cols=30 Identities=17% Similarity=-0.132 Sum_probs=12.8
Q ss_pred ceEEEeehhHHHHHHHHHhe-eeEEEEeecc
Q 019275 297 AGVIAGTVTGVSAAGAIGIG-AGVWYFRKVR 326 (343)
Q Consensus 297 ~~ii~g~~~g~~~l~~~~~~-~~i~~~r~rr 326 (343)
.++|+-.+.-++++|.+..+ +||+-+|||.
T Consensus 385 ~~~i~~avl~p~~il~~~~~~~~~~v~rrr~ 415 (436)
T PTZ00208 385 TAMIILAVLVPAIILAIIAVAFFIMVKRRRN 415 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeeeeccC
Confidence 44544433334444443433 3444344443
No 72
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=21.19 E-value=43 Score=33.30 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=7.3
Q ss_pred ceEEEeehhH
Q 019275 297 AGVIAGTVTG 306 (343)
Q Consensus 297 ~~ii~g~~~g 306 (343)
.+.|+||+++
T Consensus 366 tgaIaGIsva 375 (397)
T PF03302_consen 366 TGAIAGISVA 375 (397)
T ss_pred ccceeeeeeh
Confidence 6678888764
No 73
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=20.99 E-value=45 Score=37.43 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=11.0
Q ss_pred cCcCCCCCCCCCCCC---CCCeEEeeC
Q 019275 57 PINYPFGIDDGCGNP---YYRHMLVCS 80 (343)
Q Consensus 57 ~I~YPF~i~~~Cg~p---~~gF~L~C~ 80 (343)
...-||..+ ||.. .+.++|+..
T Consensus 625 ~~~i~f~k~--Cg~D~~C~~dLqL~~~ 649 (1030)
T KOG3637|consen 625 TFEVPFQKD--CGEDNVCVSDLQLSAS 649 (1030)
T ss_pred EEeccHhhC--cCCCcccccCcEEEEE
Confidence 445566654 5532 124666663
No 74
>PF15102 TMEM154: TMEM154 protein family
Probab=20.53 E-value=68 Score=27.38 Aligned_cols=34 Identities=6% Similarity=-0.248 Sum_probs=17.1
Q ss_pred EEEeehhHHHHHHHHHheeeEE-EEeecccccccc
Q 019275 299 VIAGTVTGVSAAGAIGIGAGVW-YFRKVRATEPVT 332 (343)
Q Consensus 299 ii~g~~~g~~~l~~~~~~~~i~-~~r~rrk~~~~~ 332 (343)
=.+..++-+++|+++.++..++ .++.|||+..-.
T Consensus 56 efiLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~~ 90 (146)
T PF15102_consen 56 EFILMILIPLVLLVLLLLSVVCLVIYYKRKRTKQE 90 (146)
T ss_pred ceEEEEeHHHHHHHHHHHHHHHheeEEeecccCCC
Confidence 3445554444444444555443 456666665443
No 75
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=20.32 E-value=23 Score=20.80 Aligned_cols=8 Identities=13% Similarity=0.318 Sum_probs=2.9
Q ss_pred HHheeeEE
Q 019275 313 IGIGAGVW 320 (343)
Q Consensus 313 ~~~~~~i~ 320 (343)
++++.+.+
T Consensus 13 ~gl~~l~~ 20 (25)
T PF07589_consen 13 LGLLGLAF 20 (25)
T ss_pred HHHHHHHH
Confidence 33333333
No 76
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=20.29 E-value=23 Score=26.13 Aligned_cols=9 Identities=11% Similarity=0.032 Sum_probs=4.1
Q ss_pred EEeeccccc
Q 019275 321 YFRKVRATE 329 (343)
Q Consensus 321 ~~r~rrk~~ 329 (343)
+++|+.|++
T Consensus 55 FK~k~drr~ 63 (68)
T PF04971_consen 55 FKIKEDRRK 63 (68)
T ss_pred hhhhHhhhH
Confidence 354444444
Done!