Query 019275
Match_columns 343
No_of_seqs 207 out of 1198
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:34:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks1_B Epidermal growth factor 96.6 7.6E-05 2.6E-09 49.3 -2.8 34 296-329 10-43 (44)
2 2l2t_A Receptor tyrosine-prote 96.2 9.3E-05 3.2E-09 48.8 -4.3 35 296-330 9-43 (44)
3 2jwa_A Receptor tyrosine-prote 95.1 0.0006 2E-08 44.9 -3.7 33 296-328 10-42 (44)
4 2k9y_A Ephrin type-A receptor 73.1 0.14 4.6E-06 32.9 -3.5 12 298-309 14-25 (41)
5 2k1k_A Ephrin type-A receptor 61.6 0.27 9.3E-06 31.1 -3.7 8 300-307 13-20 (38)
6 1egf_A Epidermal growth factor 59.2 8.7 0.0003 25.5 3.3 29 260-288 16-44 (53)
7 1a3p_A Epidermal growth factor 59.2 6.7 0.00023 25.0 2.6 28 260-287 13-40 (45)
8 1hae_A Heregulin-alpha; growth 54.6 11 0.00036 25.9 3.3 38 250-287 5-46 (63)
9 3u7u_G Neuregulin 1; signaling 54.5 6.4 0.00022 26.7 2.0 38 251-288 8-49 (55)
10 1k36_A Epiregulin; EGF-like fo 53.8 8.3 0.00028 24.9 2.4 27 261-287 16-42 (46)
11 1iij_A ERBB-2 receptor protein 51.8 0.26 8.9E-06 30.6 -4.8 26 299-326 10-35 (35)
12 3e50_C Protransforming growth 50.4 12 0.00042 24.8 2.9 28 261-288 18-45 (50)
13 1cd1_A CD1, MCD1D.1; immunolog 50.0 3.4 0.00012 38.1 0.0 11 318-328 302-312 (315)
14 1nql_B Epidermal growth factor 49.7 7.2 0.00025 26.1 1.6 28 260-287 16-43 (53)
15 1edm_B Factor IX; epidermal gr 42.7 21 0.00071 21.6 2.9 26 260-287 13-38 (39)
16 2rnl_A Amphiregulin; AR, color 36.3 32 0.0011 22.7 3.1 27 261-287 22-48 (50)
17 2klu_A T-cell surface glycopro 35.2 2 6.9E-05 30.4 -3.0 7 323-329 35-41 (70)
18 1tpg_A T-plasminogen activator 35.1 33 0.0011 25.1 3.5 31 260-290 58-89 (91)
19 1s7q_A H-2KB, H-2 class I hist 32.1 9.7 0.00033 35.7 0.0 6 146-151 98-103 (348)
20 1q55_A EP-cadherin, C-cadherin 31.8 9.8 0.00034 40.3 0.0 9 272-280 682-690 (880)
21 1vf5_G Protein PET G; photosyn 30.8 4.2 0.00015 25.2 -1.8 31 298-328 4-34 (37)
22 3ca7_A Protein spitz; argos, E 28.9 20 0.00068 23.5 1.2 28 260-287 18-47 (52)
23 3ltf_D Protein spitz; receptor 28.0 13 0.00045 25.3 0.1 29 260-288 18-48 (58)
24 1iox_A Betacellulin; EGF-like 26.6 33 0.0011 22.6 1.9 28 261-288 18-45 (50)
25 4d90_A EGF-like repeat and dis 22.1 59 0.002 25.4 3.1 29 260-288 10-38 (143)
26 2l8s_A Integrin alpha-1; trans 20.3 2.9 9.9E-05 28.4 -4.3 7 298-304 10-16 (54)
27 2l6w_A Beta-type platelet-deri 24.3 24 0.00081 22.2 0.0 8 297-304 8-15 (39)
No 1
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=96.65 E-value=7.6e-05 Score=49.31 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=18.5
Q ss_pred cceEEEeehhHHHHHHHHHheeeEEEEeeccccc
Q 019275 296 RAGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATE 329 (343)
Q Consensus 296 ~~~ii~g~~~g~~~l~~~~~~~~i~~~r~rrk~~ 329 (343)
...|++|+++|+++++++.++.+++.+|||+|+|
T Consensus 10 ~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 10 IPSIATGMVGALLLLLVVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred cceEEeehhHHHHHHHHHHHHHHHHhhhhHhhcc
Confidence 3456667777666655555444444344444444
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=96.24 E-value=9.3e-05 Score=48.81 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=19.3
Q ss_pred cceEEEeehhHHHHHHHHHheeeEEEEeecccccc
Q 019275 296 RAGVIAGTVTGVSAAGAIGIGAGVWYFRKVRATEP 330 (343)
Q Consensus 296 ~~~ii~g~~~g~~~l~~~~~~~~i~~~r~rrk~~~ 330 (343)
...|++|+++|+++++++.++.+++.+|||+|+|+
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 34466677766666555554444444455555544
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=95.12 E-value=0.0006 Score=44.87 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=17.5
Q ss_pred cceEEEeehhHHHHHHHHHheeeEEEEeecccc
Q 019275 296 RAGVIAGTVTGVSAAGAIGIGAGVWYFRKVRAT 328 (343)
Q Consensus 296 ~~~ii~g~~~g~~~l~~~~~~~~i~~~r~rrk~ 328 (343)
....|++.++|+.++++++++.++|.+|||.|+
T Consensus 10 ~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 10 PLTSIISAVVGILLVVVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred cccchHHHHHHHHHHHHHHHHHHhheehhhhhc
Confidence 345566666675555555555555544444433
No 4
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=73.15 E-value=0.14 Score=32.89 Aligned_cols=12 Identities=42% Similarity=0.637 Sum_probs=5.8
Q ss_pred eEEEeehhHHHH
Q 019275 298 GVIAGTVTGVSA 309 (343)
Q Consensus 298 ~ii~g~~~g~~~ 309 (343)
.|++|+++|+..
T Consensus 14 ~I~~~vv~Gv~l 25 (41)
T 2k9y_A 14 AVIGGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHHHHH
T ss_pred EEEeehhHHHHH
Confidence 344455555444
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=61.55 E-value=0.27 Score=31.13 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=4.0
Q ss_pred EEeehhHH
Q 019275 300 IAGTVTGV 307 (343)
Q Consensus 300 i~g~~~g~ 307 (343)
|+|+++|+
T Consensus 13 IAGiVvG~ 20 (38)
T 2k1k_A 13 IVAVIFGL 20 (38)
T ss_dssp HHHHHHHH
T ss_pred eeeeehHH
Confidence 45555543
No 6
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=59.22 E-value=8.7 Score=25.46 Aligned_cols=29 Identities=24% Similarity=0.652 Sum_probs=21.1
Q ss_pred CCceeeccCCCCCeEeeCCCCCCCCCCCc
Q 019275 260 GGGTCGFHTETQNFLCLCPKGNATSYCKD 288 (343)
Q Consensus 260 sgg~Cg~~~~~~~~~C~C~~Gn~~~gC~~ 288 (343)
-||.|.......+|.|.|+.|+.-..|+.
T Consensus 16 ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~ 44 (53)
T 1egf_A 16 NGGVCMHIESLDSYTCNCVIGYSGDRCQT 44 (53)
T ss_dssp SSCEEEEESSSSCEEEECCTTCCSSSSCC
T ss_pred CCcEEEeeCCCCCEEEECCCCCcCCcCCc
Confidence 47999853344689999999976556764
No 7
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=59.18 E-value=6.7 Score=25.03 Aligned_cols=28 Identities=21% Similarity=0.536 Sum_probs=20.1
Q ss_pred CCceeeccCCCCCeEeeCCCCCCCCCCC
Q 019275 260 GGGTCGFHTETQNFLCLCPKGNATSYCK 287 (343)
Q Consensus 260 sgg~Cg~~~~~~~~~C~C~~Gn~~~gC~ 287 (343)
.+|.|.......+|+|.|+.|+.-..|+
T Consensus 13 ngg~C~~~~~~~~~~C~C~~G~~G~~Ce 40 (45)
T 1a3p_A 13 NGGVXMHIESLDSYTCNCVIGYSGDRCQ 40 (45)
T ss_dssp SSCEEEECTTTSSEEEECCTTEETTTTC
T ss_pred CCCEEEeecCCCCEEEEcCCCCcCCcCC
Confidence 4789985334468999999996544565
No 8
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=54.60 E-value=11 Score=25.90 Aligned_cols=38 Identities=24% Similarity=0.632 Sum_probs=25.1
Q ss_pred CChhhhhcC-CCCceeecc---CCCCCeEeeCCCCCCCCCCC
Q 019275 250 ACLQCQDMT-KGGGTCGFH---TETQNFLCLCPKGNATSYCK 287 (343)
Q Consensus 250 ~C~~C~~~~-~sgg~Cg~~---~~~~~~~C~C~~Gn~~~gC~ 287 (343)
.|..|.... ..||.|... ....+|+|.|..|+.-..|+
T Consensus 5 ~c~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce 46 (63)
T 1hae_A 5 KCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46 (63)
T ss_dssp ECCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSC
T ss_pred ccCCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccC
Confidence 366665432 247999862 23468999999996544675
No 9
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=54.45 E-value=6.4 Score=26.71 Aligned_cols=38 Identities=24% Similarity=0.677 Sum_probs=23.6
Q ss_pred ChhhhhcC-CCCceeecc---CCCCCeEeeCCCCCCCCCCCc
Q 019275 251 CLQCQDMT-KGGGTCGFH---TETQNFLCLCPKGNATSYCKD 288 (343)
Q Consensus 251 C~~C~~~~-~sgg~Cg~~---~~~~~~~C~C~~Gn~~~gC~~ 288 (343)
|.+|+... .-||.|... ....+|.|.|..|+.-..|+.
T Consensus 8 ~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~ 49 (55)
T 3u7u_G 8 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQN 49 (55)
T ss_dssp CCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCE
T ss_pred CCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCc
Confidence 44554321 248999653 223689999999966556763
No 10
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=53.79 E-value=8.3 Score=24.93 Aligned_cols=27 Identities=22% Similarity=0.599 Sum_probs=20.6
Q ss_pred CceeeccCCCCCeEeeCCCCCCCCCCC
Q 019275 261 GGTCGFHTETQNFLCLCPKGNATSYCK 287 (343)
Q Consensus 261 gg~Cg~~~~~~~~~C~C~~Gn~~~gC~ 287 (343)
+|.|.+.....+|.|.|..|+.-..|+
T Consensus 16 nG~C~~~~~~~~~~C~C~~GytG~~Ce 42 (46)
T 1k36_A 16 HGQCIYLVDMSQNYCRCEVGYTGVRCE 42 (46)
T ss_dssp SEEEEEETTTTEEEEEECTTCSSTTSC
T ss_pred CCEeeccCCCCCEEEECCCCCccCCCC
Confidence 589987544468999999997655675
No 11
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=51.85 E-value=0.26 Score=30.57 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=10.5
Q ss_pred EEEeehhHHHHHHHHHheeeEEEEeecc
Q 019275 299 VIAGTVTGVSAAGAIGIGAGVWYFRKVR 326 (343)
Q Consensus 299 ii~g~~~g~~~l~~~~~~~~i~~~r~rr 326 (343)
|++|++ |+..++++++...+ |.||||
T Consensus 10 IaagVv-glll~vii~l~~~~-~iRRr~ 35 (35)
T 1iij_A 10 IIATVV-GVLLFLILVVVVGI-LIKRRR 35 (35)
T ss_dssp HHHHHH-HHHHHHHHTTTTTH-HHHHCC
T ss_pred eHHHHH-HHHHHHHHHHHhhe-EEeecC
Confidence 344433 44333333333333 445543
No 12
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=50.45 E-value=12 Score=24.81 Aligned_cols=28 Identities=29% Similarity=0.738 Sum_probs=21.9
Q ss_pred CceeeccCCCCCeEeeCCCCCCCCCCCc
Q 019275 261 GGTCGFHTETQNFLCLCPKGNATSYCKD 288 (343)
Q Consensus 261 gg~Cg~~~~~~~~~C~C~~Gn~~~gC~~ 288 (343)
+|+|.+......+.|.|..|+.-..|+.
T Consensus 18 nG~C~~~~~~~~~~C~C~~gy~G~RCe~ 45 (50)
T 3e50_C 18 HGTCRFLVQEDKPACVCHSGYVGARCEH 45 (50)
T ss_pred CCEEeeccCCCCeEEECCCCCcccCCCc
Confidence 6799986656789999999976556764
No 13
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=49.96 E-value=3.4 Score=38.15 Aligned_cols=11 Identities=9% Similarity=-0.070 Sum_probs=0.0
Q ss_pred eEEEEeecccc
Q 019275 318 GVWYFRKVRAT 328 (343)
Q Consensus 318 ~i~~~r~rrk~ 328 (343)
.+|++|||+.|
T Consensus 302 ~~~~~~~~~~~ 312 (315)
T 1cd1_A 302 YYIWRRRSAYQ 312 (315)
T ss_dssp -----------
T ss_pred HhheehhcCCC
Confidence 44555555544
No 14
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Probab=49.67 E-value=7.2 Score=26.08 Aligned_cols=28 Identities=21% Similarity=0.615 Sum_probs=20.4
Q ss_pred CCceeeccCCCCCeEeeCCCCCCCCCCC
Q 019275 260 GGGTCGFHTETQNFLCLCPKGNATSYCK 287 (343)
Q Consensus 260 sgg~Cg~~~~~~~~~C~C~~Gn~~~gC~ 287 (343)
-||.|.+.....+|.|.|..|+.-..|+
T Consensus 16 nGG~C~~~~~~~~~~C~C~~GytG~~Ce 43 (53)
T 1nql_B 16 HDGVCMYIEALDKYACNCVVGYIGERCQ 43 (53)
T ss_dssp TTCEEEEETTTTEEEEEECTTEESTTSC
T ss_pred CCeEEeeecCCCCEEEecCCCCcCCCCC
Confidence 3799985334568999999996544575
No 15
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=42.66 E-value=21 Score=21.58 Aligned_cols=26 Identities=31% Similarity=0.834 Sum_probs=18.9
Q ss_pred CCceeeccCCCCCeEeeCCCCCCCCCCC
Q 019275 260 GGGTCGFHTETQNFLCLCPKGNATSYCK 287 (343)
Q Consensus 260 sgg~Cg~~~~~~~~~C~C~~Gn~~~gC~ 287 (343)
.+|.|... ..+|.|.|+.|+.-..|.
T Consensus 13 ngg~C~~~--~~~~~C~C~~G~~G~~Ce 38 (39)
T 1edm_B 13 NGGSCKDD--INSYECWCPFGFEGKNCE 38 (39)
T ss_dssp TTCEEEEE--TTEEEEECCTTCCSTTSC
T ss_pred CCCEeEcC--CCceEeECCCCCcCCccC
Confidence 47899865 357999999996544453
No 16
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=36.32 E-value=32 Score=22.72 Aligned_cols=27 Identities=19% Similarity=0.532 Sum_probs=21.1
Q ss_pred CceeeccCCCCCeEeeCCCCCCCCCCC
Q 019275 261 GGTCGFHTETQNFLCLCPKGNATSYCK 287 (343)
Q Consensus 261 gg~Cg~~~~~~~~~C~C~~Gn~~~gC~ 287 (343)
||+|.+-.....+.|.|..|+.-..|+
T Consensus 22 nG~C~~i~~~~~~~C~C~~gy~G~RCe 48 (50)
T 2rnl_A 22 HGECKYIEHLEAVTCKCQQEYFGERCG 48 (50)
T ss_dssp SSEEEEETTTTEEEEECCSSCCSSSCC
T ss_pred CCEEEEecCCCCeeEECCCCccccccc
Confidence 789997666678999999996644565
No 17
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=35.20 E-value=2 Score=30.37 Aligned_cols=7 Identities=29% Similarity=0.354 Sum_probs=3.1
Q ss_pred eeccccc
Q 019275 323 RKVRATE 329 (343)
Q Consensus 323 r~rrk~~ 329 (343)
|+||+||
T Consensus 35 rhRrrqA 41 (70)
T 2klu_A 35 RHRRRQA 41 (70)
T ss_dssp SCCSSSC
T ss_pred HHHHHHH
Confidence 4444444
No 18
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=35.14 E-value=33 Score=25.14 Aligned_cols=31 Identities=39% Similarity=0.848 Sum_probs=22.7
Q ss_pred CCceeeccCCCCCeEeeCCCCCCCCCCC-cCC
Q 019275 260 GGGTCGFHTETQNFLCLCPKGNATSYCK-DHE 290 (343)
Q Consensus 260 sgg~Cg~~~~~~~~~C~C~~Gn~~~gC~-~~~ 290 (343)
.+|.|.......+|.|.|+.|+.-..|. +++
T Consensus 58 ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~id 89 (91)
T 1tpg_A 58 NGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR 89 (91)
T ss_dssp TTCEEEEESSSSCEEEECCTTCBSSSCCBCSS
T ss_pred CCCEeecCCCCCCeEeECCCCCcCCcCCcCCC
Confidence 4789987654468999999997655675 443
No 19
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=32.05 E-value=9.7 Score=35.69 Aligned_cols=6 Identities=17% Similarity=0.468 Sum_probs=3.3
Q ss_pred EEcCCC
Q 019275 146 FFNCSE 151 (343)
Q Consensus 146 ~~gC~~ 151 (343)
.++|..
T Consensus 98 ~~GCe~ 103 (348)
T 1s7q_A 98 ISGCEV 103 (348)
T ss_dssp EEEEEE
T ss_pred EeEEEE
Confidence 466653
No 20
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=31.78 E-value=9.8 Score=40.30 Aligned_cols=9 Identities=22% Similarity=0.648 Sum_probs=5.8
Q ss_pred CeEeeCCCC
Q 019275 272 NFLCLCPKG 280 (343)
Q Consensus 272 ~~~C~C~~G 280 (343)
-.+|.|++.
T Consensus 682 V~V~d~nd~ 690 (880)
T 1q55_A 682 ATVCSCEGK 690 (880)
T ss_dssp EEECSCSSS
T ss_pred EEEEecCCC
Confidence 456777765
No 21
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=30.78 E-value=4.2 Score=25.17 Aligned_cols=31 Identities=19% Similarity=0.124 Sum_probs=13.6
Q ss_pred eEEEeehhHHHHHHHHHheeeEEEEeecccc
Q 019275 298 GVIAGTVTGVSAAGAIGIGAGVWYFRKVRAT 328 (343)
Q Consensus 298 ~ii~g~~~g~~~l~~~~~~~~i~~~r~rrk~ 328 (343)
++..|++.|..-+.++++++-.+...||.+|
T Consensus 4 plL~GIVlGlipvtl~GLfv~Ay~QyrRg~q 34 (37)
T 1vf5_G 4 PLLDGLVLGLVFATLGGLFYAAYQQYKRPNE 34 (37)
T ss_dssp -----CHHHHHHHHHHHHTHHHHHHTCC---
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHhhccc
Confidence 4677888876666666665544433444433
No 22
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Probab=28.91 E-value=20 Score=23.54 Aligned_cols=28 Identities=18% Similarity=0.430 Sum_probs=19.5
Q ss_pred CCceeeccC--CCCCeEeeCCCCCCCCCCC
Q 019275 260 GGGTCGFHT--ETQNFLCLCPKGNATSYCK 287 (343)
Q Consensus 260 sgg~Cg~~~--~~~~~~C~C~~Gn~~~gC~ 287 (343)
-||.|.... ...+|.|.|+.|+.-..|+
T Consensus 18 NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce 47 (52)
T 3ca7_A 18 NDAHCFAVKIADLPVYSCECAIGFMGQRCE 47 (52)
T ss_dssp TTCEEEEEEETTEEEEEEECCTTEESTTSC
T ss_pred CCCEEecCccCCCCCEEEECCCCCcCCCCc
Confidence 478998631 2357999999996544565
No 23
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Probab=28.04 E-value=13 Score=25.26 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=20.7
Q ss_pred CCceeeccC--CCCCeEeeCCCCCCCCCCCc
Q 019275 260 GGGTCGFHT--ETQNFLCLCPKGNATSYCKD 288 (343)
Q Consensus 260 sgg~Cg~~~--~~~~~~C~C~~Gn~~~gC~~ 288 (343)
.||.|.... ...+|.|.|..|+.-..|+.
T Consensus 18 NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~ 48 (58)
T 3ltf_D 18 NDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48 (58)
T ss_dssp SSCEEEEEEETTEEEEEEEECTTEESSSSCE
T ss_pred CCCEEeCCccCCCCCEEeECCCCCccCCCcc
Confidence 489998532 34579999999965456764
No 24
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Probab=26.60 E-value=33 Score=22.55 Aligned_cols=28 Identities=29% Similarity=0.694 Sum_probs=21.2
Q ss_pred CceeeccCCCCCeEeeCCCCCCCCCCCc
Q 019275 261 GGTCGFHTETQNFLCLCPKGNATSYCKD 288 (343)
Q Consensus 261 gg~Cg~~~~~~~~~C~C~~Gn~~~gC~~ 288 (343)
+|+|.+-.....+.|.|..|+.-..|+.
T Consensus 18 nG~C~~~~~~~~~~C~C~~gy~G~RCe~ 45 (50)
T 1iox_A 18 KGRCRFVVAEQTPSCVCDEGYIGARCER 45 (50)
T ss_dssp TCCEEEETTTTEEEECCCTTEETTTTCE
T ss_pred CCEEEeEcCCCCeEEECCCCcccCCCCe
Confidence 6899876666789999999965445653
No 25
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=22.12 E-value=59 Score=25.38 Aligned_cols=29 Identities=31% Similarity=0.712 Sum_probs=18.1
Q ss_pred CCceeeccCCCCCeEeeCCCCCCCCCCCc
Q 019275 260 GGGTCGFHTETQNFLCLCPKGNATSYCKD 288 (343)
Q Consensus 260 sgg~Cg~~~~~~~~~C~C~~Gn~~~gC~~ 288 (343)
.++.|.......+|.|.|..|+.-..|..
T Consensus 10 ~~g~C~~~~~~g~~~C~C~~G~~G~~C~~ 38 (143)
T 4d90_A 10 NGGICLPGLADGSFSCECPDGFTDPNCSS 38 (143)
T ss_dssp GGCEEEC-----CCEEECCTTCCTTTTCS
T ss_pred CCCEeeCCCCCCCEEeECCCCCCCCCCcc
Confidence 37899875444679999999965444543
No 26
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=20.31 E-value=2.9 Score=28.44 Aligned_cols=7 Identities=29% Similarity=-0.026 Sum_probs=2.8
Q ss_pred eEEEeeh
Q 019275 298 GVIAGTV 304 (343)
Q Consensus 298 ~ii~g~~ 304 (343)
.||++++
T Consensus 10 WiIi~sv 16 (54)
T 2l8s_A 10 WVILLSA 16 (54)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 27
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=24.32 E-value=24 Score=22.17 Aligned_cols=8 Identities=25% Similarity=0.293 Sum_probs=3.7
Q ss_pred ceEEEeeh
Q 019275 297 AGVIAGTV 304 (343)
Q Consensus 297 ~~ii~g~~ 304 (343)
..+++++.
T Consensus 8 ~~vl~avl 15 (39)
T 2l6w_A 8 VVVISAIL 15 (39)
Confidence 44555543
Done!