BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019276
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 421 bits (1083), Expect = e-118, Method: Compositional matrix adjust.
Identities = 200/307 (65%), Positives = 242/307 (78%), Gaps = 1/307 (0%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
RIL+TGGAGF+GSHL DKLM + +EV V DN+FTG K N++ WIGH FELI HDV EP
Sbjct: 7 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 65
Query: 91 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 66 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 125
Query: 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI 210
P +HPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++R+ARIFNT+GPRM++
Sbjct: 126 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 185
Query: 211 DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGE 270
+DGRVVSNFI QAL+GEPLTV G+QTR+F YVSD+V+GL+ LM + PVN+GNP E
Sbjct: 186 NDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEE 245
Query: 271 FTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLME 330
T+LE A+ +K L+ G EI+ + DDP++RKPDI KAK +LGWEP V L +GL
Sbjct: 246 HTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAI 305
Query: 331 EDFRSRL 337
FR L
Sbjct: 306 HYFRKEL 312
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 409 bits (1052), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/307 (63%), Positives = 235/307 (76%), Gaps = 1/307 (0%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
RIL+TGGAGF+GSHL DKL + +EV V DN+FTG K N++ WIGH FELI HDV EP
Sbjct: 29 RILITGGAGFVGSHLTDKLXX-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 87
Query: 91 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLN LGLAKRVGAR+LL STSEVYGD
Sbjct: 88 LYIEVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGARLLLASTSEVYGD 147
Query: 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI 210
P +HPQ E YWG+VNPIG R+CYDEGKRVAET + Y +Q G+++R+ARIFNT+GPR +
Sbjct: 148 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVARIFNTFGPRXHX 207
Query: 211 DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGE 270
+DGRVVSNFI QAL+GEPLTV G+QTR+F YVSD+V+GL+ L + PVN+GNP E
Sbjct: 208 NDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALXNSNVSSPVNLGNPEE 267
Query: 271 FTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLME 330
T+LE A+ +K L+ G EI+ + DDP++RKPDI KAK LGWEP V L +GL
Sbjct: 268 HTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLXLGWEPVVPLEEGLNKAI 327
Query: 331 EDFRSRL 337
FR L
Sbjct: 328 HYFRKEL 334
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/325 (32%), Positives = 157/325 (48%), Gaps = 32/325 (9%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
MRI+VTGGAGFIGSHLVDKL+E EV+V DN +G ++ + +P EL D+ +
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKD 54
Query: 90 PLL---IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTS 145
I+ D ++H A P+ NV+ T N+L A++ G R ++ S+S
Sbjct: 55 YSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSS 114
Query: 146 EVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYG 205
VYGD + P PE P S Y K E + Y R G++ R N G
Sbjct: 115 TVYGDADVIPTPEE-----EPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVG 169
Query: 206 PRMNIDDGRVVSNFIAQALRGEP--LTVQKPGTQTRSFCYVSDMVDGLIRLMEG--ENTG 261
PR+ V+ +FI + LR P L V GTQ +S+ YV D V+ + + E
Sbjct: 170 PRLR---HGVIYDFIMK-LRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDA 225
Query: 262 P---VNIGNPGEFTMLELAETVKELINPGIEIKMVENTPD------DPRQRKPDISKAKE 312
P +N+GN +L++A+ V E++ EI++V +TPD D + ++K +
Sbjct: 226 PFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMK 285
Query: 313 LLGWEPKVKLRDGLPLMEEDFRSRL 337
L GW P + + + ED L
Sbjct: 286 LTGWRPTMTSAEAVKKTAEDLAKEL 310
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 153/324 (47%), Gaps = 34/324 (10%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVAD--NYFTGSKDNLKKWIGHPRFELIRHDV 87
MRI+VTGGAGFIGSHLVDKL+E EV+V D TG L H R +L D
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDIVQRDTGGSAEL-----HVR-DL--KDY 51
Query: 88 TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSE 146
+ I+ D ++H A P+ NV+ T N+L A++ G R ++ S+S
Sbjct: 52 SWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSST 111
Query: 147 VYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGP 206
VYGD + P PE P S Y K E + Y R G++ R N GP
Sbjct: 112 VYGDADVIPTPEE-----EPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGP 166
Query: 207 RMNIDDGRVVSNFIAQALRGEP--LTVQKPGTQTRSFCYVSDMVDGLIRLMEG--ENTGP 262
R+ V+ +FI + LR P L V GTQ +S+ YV D V+ + + E P
Sbjct: 167 RLR---HGVIYDFIMK-LRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAP 222
Query: 263 ---VNIGNPGEFTMLELAETVKELINPGIEIKMVENTPD------DPRQRKPDISKAKEL 313
+N+GN +L++A+ V E++ EI++V +TPD D + ++K +L
Sbjct: 223 FLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKL 282
Query: 314 LGWEPKVKLRDGLPLMEEDFRSRL 337
GW P + + + ED L
Sbjct: 283 TGWRPTMTSAEAVKKTAEDLAKEL 306
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 157/338 (46%), Gaps = 52/338 (15%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT- 88
MR+L+ G GFIG+HL ++L+ + EV D GS D + +++ HP F + D++
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISI 56
Query: 89 -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 143
E + + D + L A+PI Y NP++ + + L ++ + RI+ S
Sbjct: 57 HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116
Query: 144 TSEVYGDPLIHPQPETYWGN------VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIR 196
TSEVYG + Y+ V P+ R Y K++ + +++ Y + G+Q
Sbjct: 117 TSEVYG-----MCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 171
Query: 197 IARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDG 250
+ R FN GPR++ I R ++ I + G P+ + G Q R F + D ++
Sbjct: 172 LFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEA 231
Query: 251 LIRLMEGENTGP------VNIGNP-GEFTMLELAET---------VKELINPGIEIKMVE 294
L R++ EN G +NIGNP E ++ EL E ++ P ++VE
Sbjct: 232 LYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE 289
Query: 295 NTP------DDPRQRKPDISKAKELLGWEPKVKLRDGL 326
++ D RKP I A L WEPK+ +++ +
Sbjct: 290 SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETI 327
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 156/345 (45%), Gaps = 45/345 (13%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT-- 88
++L+ G GFIG HL +++E EV D D L + H R D+T
Sbjct: 26 KVLILGVNGFIGHHLSKRILETTDWEVFGMDM----QTDRLGDLVKHERMHFFEGDITIN 81
Query: 89 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144
E + + D I L A+P Y P++ + + L ++ A + G ++ ST
Sbjct: 82 KEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPST 141
Query: 145 SEVYG---DPLIHPQPETY-WGNVN-PIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIAR 199
SEVYG D P +G +N P + +C K++ + +++ Y + G+ + R
Sbjct: 142 SEVYGMCADEQFDPDASALTYGPINKPRWIYAC---SKQLMDRVIWGYGME-GLNFTLFR 197
Query: 200 IFNTYGPRMNI------DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIR 253
FN GP ++ RVV+ F+ +RGE +++ G+Q R+F YV D + L++
Sbjct: 198 PFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMK 257
Query: 254 LMEGEN---TGPV-NIGNP-GEFT-------MLELAETVKELINPGIEIKMVENTP---- 297
++E N TG + NIGNP F+ MLELA E + +K+VE T
Sbjct: 258 IIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYY 317
Query: 298 ----DDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLG 338
D + R P I + LGW P+ D L + E +R +
Sbjct: 318 GNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGHVA 362
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 156/337 (46%), Gaps = 52/337 (15%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT-- 88
R+L+ G GFIG+HL ++L+ + EV D GS D + +++ HP F + D++
Sbjct: 15 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 70
Query: 89 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144
E + + D + L A+PI Y NP++ + + L ++ + RI+ ST
Sbjct: 71 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 130
Query: 145 SEVYGDPLIHPQPETYWGN------VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIRI 197
SEVYG + Y+ V P+ R Y K++ + +++ Y + G+Q +
Sbjct: 131 SEVYG-----MCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 185
Query: 198 ARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL 251
R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L
Sbjct: 186 FRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEAL 245
Query: 252 IRLMEGENTGP------VNIGNP-GEFTMLELAET---------VKELINPGIEIKMVEN 295
R++ EN G +NIGNP E ++ EL E ++ P ++VE+
Sbjct: 246 YRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVES 303
Query: 296 TP------DDPRQRKPDISKAKELLGWEPKVKLRDGL 326
+ D RKP I A L WEPK+ +++ +
Sbjct: 304 SSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETI 340
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 132/254 (51%), Gaps = 14/254 (5%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL 91
I+VTGGAGFIGSH+VDKL +E NE++V DN +G+++ + + + +L D+ +
Sbjct: 4 IVVTGGAGFIGSHVVDKL--SESNEIVVIDNLSSGNEEFVNEAARLVKADLAADDIKD-Y 60
Query: 92 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD 150
L ++++H+A NP + + NV+ T +L ++ G +RI+ TSTS VYG+
Sbjct: 61 LKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGE 120
Query: 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI 210
+ P PE Y +PI S Y K E L+ Y +Q I R N G R
Sbjct: 121 AKVIPTPEDY--PTHPI---SLYGASKLACEALIESYCHTFDMQAWIYRFANVIGRRST- 174
Query: 211 DDGRVVSNFIAQALRG-EPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG-ENTGPVNIGNP 268
V+ +FI + R E L + G Q +S+ Y+SD VD ++ + G E NIG+
Sbjct: 175 --HGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNIFNIGSE 232
Query: 269 GEFTMLELAETVKE 282
+ + +AE V E
Sbjct: 233 DQIKVKRIAEIVCE 246
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 156/337 (46%), Gaps = 52/337 (15%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT-- 88
R+L+ G GFIG+HL ++L+ + EV D GS D + +++ HP F + D++
Sbjct: 317 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 372
Query: 89 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144
E + + D + L A+PI Y NP++ + + L ++ + RI+ ST
Sbjct: 373 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 432
Query: 145 SEVYGDPLIHPQPETYWGN------VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIRI 197
SEVYG + Y+ V P+ R Y K++ + +++ Y + G+Q +
Sbjct: 433 SEVYG-----MCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 487
Query: 198 ARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL 251
R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L
Sbjct: 488 FRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEAL 547
Query: 252 IRLMEGENTGP------VNIGNP-GEFTMLELAET---------VKELINPGIEIKMVEN 295
R++ EN G +NIGNP E ++ EL E ++ P ++VE+
Sbjct: 548 YRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVES 605
Query: 296 TP------DDPRQRKPDISKAKELLGWEPKVKLRDGL 326
+ D RKP I A L WEPK+ +++ +
Sbjct: 606 SSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETI 642
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 156/337 (46%), Gaps = 52/337 (15%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT-- 88
R+L+ G GFIG+HL ++L+ + EV D GS D + +++ HP F + D++
Sbjct: 15 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 70
Query: 89 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144
E + + D + L A+PI Y NP++ + + L ++ + RI+ ST
Sbjct: 71 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 130
Query: 145 SEVYGDPLIHPQPETYWGN------VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIRI 197
+EVYG + Y+ V P+ R Y K++ + +++ Y + G+Q +
Sbjct: 131 AEVYG-----MCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 185
Query: 198 ARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL 251
R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L
Sbjct: 186 FRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEAL 245
Query: 252 IRLMEGENTGP------VNIGNP-GEFTMLELAET---------VKELINPGIEIKMVEN 295
R++ EN G +NIGNP E ++ EL E ++ P ++VE+
Sbjct: 246 YRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVES 303
Query: 296 TP------DDPRQRKPDISKAKELLGWEPKVKLRDGL 326
+ D RKP I A L WEPK+ +++ +
Sbjct: 304 SSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETI 340
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 155/337 (45%), Gaps = 52/337 (15%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT-- 88
R+L+ G GFIG+HL ++L+ + EV D GS D + +++ HP F + D++
Sbjct: 15 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 70
Query: 89 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144
E + + D + L A+PI Y NP++ + + L ++ + RI+ ST
Sbjct: 71 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 130
Query: 145 SEVYGDPLIHPQPETYWGN------VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIRI 197
SEVYG + Y+ V P+ R Y K++ + +++ Y + G+Q +
Sbjct: 131 SEVYG-----MCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 185
Query: 198 ARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL 251
R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L
Sbjct: 186 FRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEAL 245
Query: 252 IRLMEGENTGP------VNIGNP-GEFTMLELAET---------VKELINPGIEIKMVEN 295
R++ EN G +NIGNP E ++ EL E ++ P ++VE+
Sbjct: 246 YRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVES 303
Query: 296 TP------DDPRQRKPDISKAKELLGWEPKVKLRDGL 326
+ D KP I A L WEPK+ +++ +
Sbjct: 304 SSYYGKGYQDVEHEKPSIRNAHRCLDWEPKIDMQETI 340
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 155/337 (45%), Gaps = 52/337 (15%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT-- 88
R+L+ G GFIG+HL ++L+ + EV D GS D + +++ HP F + D++
Sbjct: 15 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 70
Query: 89 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144
E + + D + L A+PI Y NP++ + + L ++ + RI+ ST
Sbjct: 71 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 130
Query: 145 SEVYGDPLIHPQPETYWGN------VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIRI 197
SEVYG + Y+ V P+ R Y K++ + +++ Y + G+Q +
Sbjct: 131 SEVYG-----MCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 185
Query: 198 ARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL 251
R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L
Sbjct: 186 FRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEAL 245
Query: 252 IRLMEGENTGP------VNIGNP-GEFTMLELAET---------VKELINPGIEIKMVEN 295
R++ EN G +NIGNP E ++ EL E ++ P ++VE+
Sbjct: 246 YRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVES 303
Query: 296 TP------DDPRQRKPDISKAKELLGWEPKVKLRDGL 326
+ D KP I A L WEPK+ +++ +
Sbjct: 304 SSYYGKGYQDVEHMKPSIRNAHRCLDWEPKIDMQETI 340
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 155/337 (45%), Gaps = 52/337 (15%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT-- 88
R+L+ G GFIG+HL ++L+ + EV D GS D + +++ HP F + D++
Sbjct: 15 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 70
Query: 89 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144
E + + D + L A+PI Y NP++ + + L ++ + RI+ ST
Sbjct: 71 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 130
Query: 145 SEVYGDPLIHPQPETYWGN------VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIRI 197
SEVYG + Y+ V P+ R Y K++ + +++ Y + G+Q +
Sbjct: 131 SEVYG-----MCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 185
Query: 198 ARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL 251
R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L
Sbjct: 186 FRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEAL 245
Query: 252 IRLMEGENTGP------VNIGNP-GEFTMLELAET---------VKELINPGIEIKMVEN 295
R++ EN G +NIGNP E ++ EL E ++ P ++VE+
Sbjct: 246 YRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVES 303
Query: 296 TP------DDPRQRKPDISKAKELLGWEPKVKLRDGL 326
+ D KP I A L WEPK+ +++ +
Sbjct: 304 SSYYGKGYQDVEHYKPSIRNAHRCLDWEPKIDMQETI 340
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 142/323 (43%), Gaps = 21/323 (6%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENE-----KNEVIVADNY-FTGSKDNLKKWIGHPRFELI 83
MR+LVTGGAGFIGSH V +L+ +EVIV D+ + G++ NL PR +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 84 RHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A 137
D+ + L+ VD I H A + +TNV GT +L A G
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 138 RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRI 197
R++ ST EVYG W +P+ S Y K ++ + YHR +G+ +RI
Sbjct: 121 RVVHVSTDEVYGS-----IDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRI 175
Query: 198 ARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257
R N YGP + + +++ F+ L G L + G R + + D G+ ++ G
Sbjct: 176 TRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAG 233
Query: 258 ENTGPV-NIGNPGEFTMLELAETVKELINPGI-EIKMVENTPDDPRQRKPDISKAKELLG 315
G + +IG E T EL + + + ++ V + + D K + LG
Sbjct: 234 GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELG 293
Query: 316 WEPKVKLRDGLPLMEEDFRSRLG 338
+ P+V DGL +R G
Sbjct: 294 YRPQVSFADGLARTVRWYRENRG 316
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 143/323 (44%), Gaps = 21/323 (6%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENE-----KNEVIVADNY-FTGSKDNLKKWIGHPRFELI 83
MR+LVTGGAGFIGSH V +L+ +EVIV D+ + G++ NL PR +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 84 RHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A 137
D+ + L+ VD I H A + +TNV GT +L A G
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 138 RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRI 197
R++ ST++VYG W +P+ S Y K ++ + YHR +G+ +RI
Sbjct: 121 RVVHVSTNQVYGS-----IDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRI 175
Query: 198 ARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257
R N YGP + + +++ F+ L G L + G R + + D G+ ++ G
Sbjct: 176 TRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAG 233
Query: 258 ENTGPV-NIGNPGEFTMLELAETVKELINPGI-EIKMVENTPDDPRQRKPDISKAKELLG 315
G + +IG E T EL + + + ++ V + + D K + LG
Sbjct: 234 GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELG 293
Query: 316 WEPKVKLRDGLPLMEEDFRSRLG 338
+ P+V DGL +R G
Sbjct: 294 YRPQVSFADGLARTVRWYRENRG 316
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 146/333 (43%), Gaps = 24/333 (7%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
+N ++V GGAGF+GS+LV +L+E N+V V DN + K N+ HP +
Sbjct: 31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPD---HPAVRFSETSI 87
Query: 88 TEPLLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM---LGLAKRVGARI 139
T+ L+ E D ++HLA ++P+ + N + TL + L KR+ +
Sbjct: 88 TDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVV 147
Query: 140 LLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIAR 199
+ + + V+ S Y K E YH+QH + AR
Sbjct: 148 YSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRAR 207
Query: 200 IFNTYGPRMNIDDGR-----------VVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMV 248
N YGP + GR V FI +AL+G PL ++ G TR F +V D+
Sbjct: 208 FQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDVA 267
Query: 249 DGLIRL-MEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTP-DDPRQRKPD 306
+GLI +G G NI + E ++ +LA + E+ E+ + P D+ +R
Sbjct: 268 NGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGS 327
Query: 307 ISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGV 339
KA+ LG+ V + DGL E ++ L V
Sbjct: 328 PEKARRELGFSADVSIDDGLRKTIEWTKANLAV 360
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 145/309 (46%), Gaps = 18/309 (5%)
Query: 29 NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSK-DNLKKWIGHPRFELIRHD 86
+M++LVTGG GFIGS+ + ++E + EVI D GS NLK PR+ ++ D
Sbjct: 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGD 62
Query: 87 VTEPLLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARI 139
V + L+ +VD + HLA + +P + +NVIGT +L +R R
Sbjct: 63 VADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRF 122
Query: 140 LLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIAR 199
+ ST EVYGD L E + + S Y K ++ L+ + R + + I R
Sbjct: 123 VHVSTDEVYGDILKGSFTEN-----DRLMPSSPYSATKAASDMLVLGWTRTYNLNASITR 177
Query: 200 IFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL-IRLMEGE 258
N YGP + +++ I +A G + + G R + YV D V + + L++GE
Sbjct: 178 CTNNYGPYQFPE--KLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGE 235
Query: 259 NTGPVNIGNPGEFTMLELAETVKELINPGIE-IKMVENTPDDPRQRKPDISKAKELLGWE 317
+ NI E T LE+ + + L+ G E I++VE+ P + D K L W
Sbjct: 236 SREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRDLKWR 295
Query: 318 PKVKLRDGL 326
PK +G+
Sbjct: 296 PKYTFDEGI 304
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 149/315 (47%), Gaps = 25/315 (7%)
Query: 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT 88
N++I +TG GFI SH+ +L ++E + VI +D +++ + + F L+ V
Sbjct: 29 NLKISITGAGGFIASHIARRL-KHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 89 EPLLI---EVDQIYHLACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTS 143
E L VD +++LA + F + N + N + + NM+ A+ G R S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 144 TSEVYGDPLIHPQPETYWGNVN-------PIGVRSCYDEGKRVAETLMFDYHRQHGIQIR 196
++ +Y + Q ET NV+ P + Y K E L Y++ GI+ R
Sbjct: 145 SACIYPE---FKQLETT--NVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECR 199
Query: 197 IARIFNTYGPRMNIDDGRVVS--NFIAQALRG-EPLTVQKPGTQTRSFCYVSDMVDGLIR 253
I R N YGP GR + F +A + + G QTRSF ++ + V+G++R
Sbjct: 200 IGRFHNIYGPFGTWKGGREAAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLR 259
Query: 254 LMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKEL 313
L + + PVNIG+ +M E+AE V + I + P+ R R D + KE
Sbjct: 260 LTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG-PEGVRGRNSDNNLIKEK 318
Query: 314 LGWEPKVKLRDGLPL 328
LGW P ++L++GL +
Sbjct: 319 LGWAPNMRLKEGLRI 333
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 149/315 (47%), Gaps = 25/315 (7%)
Query: 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT 88
N++I +TG GFI SH+ +L ++E + VI +D +++ + + F L+ V
Sbjct: 29 NLKISITGAGGFIASHIARRL-KHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 89 EPLLI---EVDQIYHLACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTS 143
E L VD +++LA + F + N + N + + NM+ A+ G R S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 144 TSEVYGDPLIHPQPETYWGNVN-------PIGVRSCYDEGKRVAETLMFDYHRQHGIQIR 196
++ +Y + Q ET NV+ P + Y K E L Y++ GI+ R
Sbjct: 145 SACIYPE---FKQLETT--NVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECR 199
Query: 197 IARIFNTYGPRMNIDDGR--VVSNFIAQALRG-EPLTVQKPGTQTRSFCYVSDMVDGLIR 253
I R N YGP GR + F +A + + G QTRSF ++ + V+G++R
Sbjct: 200 IGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLR 259
Query: 254 LMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKEL 313
L + + PVNIG+ +M E+AE V + I + P+ R R D + KE
Sbjct: 260 LTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG-PEGVRGRNSDNNLIKEK 318
Query: 314 LGWEPKVKLRDGLPL 328
LGW P ++L++GL +
Sbjct: 319 LGWAPNMRLKEGLRI 333
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 154/321 (47%), Gaps = 34/321 (10%)
Query: 33 LVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL---------KKWIGHPRFELI 83
L+TG AGFIGS+L++KL++ + VI DN+ TG + NL ++W RF I
Sbjct: 42 LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 97
Query: 84 RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138
D+ E ++ VD + H A S +P+ T TN+ G LN+L AK +
Sbjct: 98 EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 157
Query: 139 -ILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRI 197
++S YGD P+ E GN P+ S Y K V E Y R +G +
Sbjct: 158 SFTYAASSSTYGDHPALPKVEENIGN--PL---SPYAVTKYVNEIYAQVYARTYGFKTIG 212
Query: 198 ARIFNTYGPRM--NIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255
R FN +G R N V+ + A L+G+ + + G +R FCY+ +++ I
Sbjct: 213 LRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSA 272
Query: 256 EGENTGPVNIGNP--GEFTML-ELAETVKELIN-----PGIEIKMVENTPDDPRQRKPDI 307
+++ NI N G+ T L EL+ + + +N + IK E D R + D+
Sbjct: 273 LAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADV 332
Query: 308 SKAKELLGWEPKVKLRDGLPL 328
+KA +LL + P +K+R+GL L
Sbjct: 333 TKAIDLLKYRPNIKIREGLRL 353
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 149/315 (47%), Gaps = 25/315 (7%)
Query: 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT 88
N++I +TG GFI SH+ +L ++E + VI +D +++ + + F L+ V
Sbjct: 29 NLKISITGAGGFIASHIARRL-KHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 89 EPLLI---EVDQIYHLACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTS 143
E L VD +++LA + F + N + N + + NM+ A+ G R S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 144 TSEVYGDPLIHPQPETYWGNVN-------PIGVRSCYDEGKRVAETLMFDYHRQHGIQIR 196
++ +Y + Q ET NV+ P + Y + E L Y++ GI+ R
Sbjct: 145 SACIYPE---FKQLETT--NVSLKESDAWPAEPQDAYGLERLATEELCKHYNKDFGIECR 199
Query: 197 IARIFNTYGPRMNIDDGR--VVSNFIAQALRG-EPLTVQKPGTQTRSFCYVSDMVDGLIR 253
I R N YGP GR + F +A + + G QTRSF ++ + V+G++R
Sbjct: 200 IGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLR 259
Query: 254 LMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKEL 313
L + + PVNIG+ +M E+AE V + I + P+ R R D + KE
Sbjct: 260 LTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG-PEGVRGRNSDNNLIKEK 318
Query: 314 LGWEPKVKLRDGLPL 328
LGW P ++L++GL +
Sbjct: 319 LGWAPNMRLKEGLRI 333
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 154/321 (47%), Gaps = 34/321 (10%)
Query: 33 LVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL---------KKWIGHPRFELI 83
L+TG AGFIGS+L++KL++ + VI DN+ TG + NL ++W RF I
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 84
Query: 84 RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138
D+ E ++ VD + H A S +P+ T TN+ G LN+L AK +
Sbjct: 85 EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 144
Query: 139 -ILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRI 197
++S YGD P+ E GN P+ S Y K V E Y R +G +
Sbjct: 145 SFTYAASSSTYGDHPALPKVEENIGN--PL---SPYAVTKYVNEIYAQVYARTYGFKTIG 199
Query: 198 ARIFNTYGPRM--NIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255
R FN +G R N V+ + A L+G+ + + G +R FCY+ +++ I
Sbjct: 200 LRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSA 259
Query: 256 EGENTGPVNIGNP--GEFTML-ELAETVKELIN-----PGIEIKMVENTPDDPRQRKPDI 307
+++ NI N G+ T L EL+ + + +N + IK E D R + D+
Sbjct: 260 LAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADV 319
Query: 308 SKAKELLGWEPKVKLRDGLPL 328
+KA +LL + P +K+R+GL L
Sbjct: 320 TKAIDLLKYRPNIKIREGLRL 340
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 154/321 (47%), Gaps = 34/321 (10%)
Query: 33 LVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL---------KKWIGHPRFELI 83
L+TG AGFIGS+L++KL++ + VI DN+ TG + NL ++W RF I
Sbjct: 23 LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 78
Query: 84 RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138
D+ E ++ VD + H A S +P+ T TN+ G LN+L AK +
Sbjct: 79 EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 138
Query: 139 -ILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRI 197
++S YGD P+ E GN P+ S Y K V E Y R +G +
Sbjct: 139 SFTYAASSSTYGDHPALPKVEENIGN--PL---SPYAVTKYVNEIYAQVYARTYGFKTIG 193
Query: 198 ARIFNTYGPRM--NIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255
R FN +G R N V+ + A L+G+ + + G +R FCY+ +++ I
Sbjct: 194 LRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSA 253
Query: 256 EGENTGPVNIGNP--GEFTML-ELAETVKELIN-----PGIEIKMVENTPDDPRQRKPDI 307
+++ NI N G+ T L EL+ + + +N + IK E D R + D+
Sbjct: 254 LAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADV 313
Query: 308 SKAKELLGWEPKVKLRDGLPL 328
+KA +LL + P +K+R+GL L
Sbjct: 314 TKAIDLLKYRPNIKIREGLRL 334
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 149/315 (47%), Gaps = 25/315 (7%)
Query: 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT 88
N++I +TG GFI SH+ +L ++E + VI +D +++ + + F L+ V
Sbjct: 29 NLKISITGAGGFIASHIARRL-KHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 89 EPLLI---EVDQIYHLACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTS 143
E L VD +++LA + F + N + N + + NM+ A+ G R S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 144 TSEVYGDPLIHPQPETYWGNVN-------PIGVRSCYDEGKRVAETLMFDYHRQHGIQIR 196
++ +Y + Q ET NV+ P + + K E L Y++ GI+ R
Sbjct: 145 SACIYPE---FKQLETT--NVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECR 199
Query: 197 IARIFNTYGPRMNIDDGR--VVSNFIAQALRG-EPLTVQKPGTQTRSFCYVSDMVDGLIR 253
I R N YGP GR + F +A + + G QTRSF ++ + V+G++R
Sbjct: 200 IGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLR 259
Query: 254 LMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKEL 313
L + + PVNIG+ +M E+AE V + I + P+ R R D + KE
Sbjct: 260 LTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG-PEGVRGRNSDNNLIKEK 318
Query: 314 LGWEPKVKLRDGLPL 328
LGW P ++L++GL +
Sbjct: 319 LGWAPNMRLKEGLRI 333
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 154/321 (47%), Gaps = 34/321 (10%)
Query: 33 LVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL---------KKWIGHPRFELI 83
L+TG AGFIGS+L++KL++ + VI DN+ TG + NL ++W RF I
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 84
Query: 84 RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138
D+ E ++ VD + H A S +P+ T TN+ G LN+L AK +
Sbjct: 85 EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 144
Query: 139 -ILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRI 197
++S YGD P+ E GN P+ S Y K V E Y R +G +
Sbjct: 145 SFTYAASSSTYGDHPALPKVEENIGN--PL---SPYAVTKYVNEIYAQVYARTYGFKTIG 199
Query: 198 ARIFNTYGPRM--NIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255
R FN +G R N V+ + A L+G+ + + G +R FCY+ +++ I
Sbjct: 200 LRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSA 259
Query: 256 EGENTGPVNIGNP--GEFTML-ELAETVKELIN-----PGIEIKMVENTPDDPRQRKPDI 307
+++ NI N G+ T L EL+ + + +N + IK E D R + D+
Sbjct: 260 LAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRASQADV 319
Query: 308 SKAKELLGWEPKVKLRDGLPL 328
+KA +LL + P +K+R+GL L
Sbjct: 320 TKAIDLLKYRPNIKIREGLRL 340
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 144/330 (43%), Gaps = 36/330 (10%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVT 88
M+IL+TGGAGFIGS +V +++N ++ V+ D + G+ ++L R+ D+
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60
Query: 89 EPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---- 137
+ I + D + HLA + P I+TN++GT +L +A++ +
Sbjct: 61 DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120
Query: 138 ------RILLTSTSEVYGDPLIHPQPET------YWGNVNPIGVRSCYDEGKRVAETLMF 185
R ST EVYGD L HP + S Y K ++ L+
Sbjct: 121 DKKNNFRFHHISTDEVYGD-LPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 186 DYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245
+ R +G+ + N YGP + +++ I AL G+PL + G Q R + YV
Sbjct: 180 AWRRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQIRDWLYVE 237
Query: 246 DMVDGL-IRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGI--------EIKMVENT 296
D L + + EG+ NIG E L++ T+ +L++ + +I V +
Sbjct: 238 DHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADR 297
Query: 297 PDDPRQRKPDISKAKELLGWEPKVKLRDGL 326
P R+ D K LGW+P G+
Sbjct: 298 PGHDRRYAIDAGKISRELGWKPLETFESGI 327
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 144/313 (46%), Gaps = 19/313 (6%)
Query: 27 QSNM-RILVTGGAGFIGSHLVDKLMEN-EKNEVIVADNY-FTGSKDNLKKWIGHPRFELI 83
QSN ILVTGGAGFIGS+ V +++ E ++I D ++G+ +N+K HP + +
Sbjct: 21 QSNAXNILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFV 80
Query: 84 RHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV- 135
+ ++ L+E V I + A + NP+ TNVIGT+ +L L K+
Sbjct: 81 KGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYP 140
Query: 136 GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQI 195
+++ ST EVYG + P+ S Y K A+ + Y++ + + +
Sbjct: 141 HIKLVQVSTDEVYGS----LGKTGRFTEETPLAPNSPYSSSKASADXIALAYYKTYQLPV 196
Query: 196 RIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255
+ R N YGP + +++ + AL G+ L + G R + +V+D + ++
Sbjct: 197 IVTRCSNNYGPYQYPE--KLIPLXVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVL 254
Query: 256 EGENTGPV-NIGNPGEFTMLELAETVKELI-NPGIEIKMVENTPDDPRQRKPDISKAKEL 313
G V NIG E T +E+ E + L+ +I+ V + R+ + K K
Sbjct: 255 HKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKXKNE 314
Query: 314 LGWEPKVKLRDGL 326
WEPK GL
Sbjct: 315 FDWEPKYTFEQGL 327
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 147/314 (46%), Gaps = 25/314 (7%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTG---SKDNLKKWIGHPRFELIRHDV 87
RIL+TGGAGFIG HL L+ + EV V D+ + K++ P EL D+
Sbjct: 9 RILITGGAGFIGGHLARALVAS-GEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDL 67
Query: 88 TEPLLIEVDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 145
+ +V +YHLA S P +K P+ + NV ++L L VG ++++ ST
Sbjct: 68 S-----DVRLVYHLASHKSVPRSFK-QPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTC 120
Query: 146 EVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI--QIRIARIFNT 203
EVYG P PE +P+ RS Y K V ++ H++ + ++ I R FN
Sbjct: 121 EVYGQADTLPTPED-----SPLSPRSPYAASK-VGLEMVAGAHQRASVAPEVGIVRFFNV 174
Query: 204 YGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV 263
YGP D +V A L L V+ G Q R F Y++D+VD L+ L V
Sbjct: 175 YGPGERPD--ALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLPSVV 232
Query: 264 NIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEP-KVKL 322
N G+ ++ ++ + + +P E+ + P++ + + D + +G + +
Sbjct: 233 NFGSGQSLSVNDVIR-ILQATSPAAEVARKQPRPNEITEFRADTALQTRQIGERSGGIGI 291
Query: 323 RDGLPLMEEDFRSR 336
+G+ L E ++SR
Sbjct: 292 EEGIRLTLEWWQSR 305
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 150/317 (47%), Gaps = 21/317 (6%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
MR+LVTGGAGFIGSH+V+ L+ EV V DN TG ++N+ K + R +L + E
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLAR-GLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVE 59
Query: 90 PLLIEV--DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS-- 145
E + H A AS +PV + N++G LN+L ++ G L+ +++
Sbjct: 60 RAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGG 119
Query: 146 EVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYG 205
+YG+ + E W P +S Y K E + Y + +G++ R N YG
Sbjct: 120 AIYGEVPEGERAEETW----PPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYG 175
Query: 206 PRMNID-DGRVVSNFIAQALRGEPLTV---QKPGTQ--TRSFCYVSDMVDG-LIRLMEGE 258
PR + + VV+ F + L+G P+T+ + PG + R + YV D+ + + L E
Sbjct: 176 PRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALALFSLE 235
Query: 259 NTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELL-GWE 317
G N+G T E+ V E E++ P D + +S K + GW
Sbjct: 236 --GIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGD--LERSVLSPLKLMAHGWR 291
Query: 318 PKVKLRDGLPLMEEDFR 334
PKV ++G+ L + FR
Sbjct: 292 PKVGFQEGIRLTVDHFR 308
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 134/307 (43%), Gaps = 25/307 (8%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTE 89
I+VTGGAGFIGS+ V + N + V V D + G+K NL+ +G R EL+ D+ +
Sbjct: 7 IIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILG-DRVELVVGDIAD 65
Query: 90 PLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144
L++ D I H A + +P I TN IGT +L A++ R ST
Sbjct: 66 AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVST 125
Query: 145 SEVYGD-PLIHPQPE---------TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQ 194
EVYGD PL P T N NP S Y K ++ ++ + R G++
Sbjct: 126 DEVYGDLPLREDLPGHGEGPGEKFTAETNYNP---SSPYSSTKAASDLIVKAWVRSFGVK 182
Query: 195 IRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRL 254
I+ N YGP +I+ + + I L G + G R + + +D G+ +
Sbjct: 183 ATISNCSNNYGPYQHIE--KFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAI 240
Query: 255 MEGENTGPVN-IGNPGEFTMLELAETVKELI-NPGIEIKMVENTPDDPRQRKPDISKAKE 312
+ G IG GE E+ E + E + P V + + D SK ++
Sbjct: 241 LTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRD 300
Query: 313 LLGWEPK 319
LGW P+
Sbjct: 301 ELGWTPQ 307
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 139/314 (44%), Gaps = 37/314 (11%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL----KKWIGHPRFELIRHDV 87
IL+ GGAG+IGSH V KL++ E V+V DN TG +D + K + G R + DV
Sbjct: 4 ILICGGAGYIGSHAVKKLVD-EGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDV 62
Query: 88 TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE 146
IE + H A + P++ NV G L +L + + + +ST+
Sbjct: 63 FTQENIEA--VMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAA 120
Query: 147 VYGD---PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNT 203
YG+ LI + T NP + Y E K E ++ Y + ++ +I R FN
Sbjct: 121 TYGEVDVDLITEETMT-----NPT---NTYGETKLAIEKMLHWYSQASNLRYKIFRYFNV 172
Query: 204 YGPRMNI---DDGRVVSNFIAQALRGEPLTVQK-----------PGTQTRSFCYVSDMVD 249
G N +D R ++ I L+ +K GT R + +V D+V
Sbjct: 173 AGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLVA 232
Query: 250 ----GLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKP 305
GL L G + N+GN F++ E+ + V+E+ N I ++ DP +
Sbjct: 233 AHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVA 292
Query: 306 DISKAKELLGWEPK 319
KAKE LGW+P+
Sbjct: 293 SSQKAKEKLGWDPR 306
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 136/327 (41%), Gaps = 36/327 (11%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTE 89
+IL+TGGAGFIGS LV ++ + V+V D + G+ +L RF + D+ +
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 90 PLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA---------- 132
+ + D + HLA + P I+TN++GT +L A
Sbjct: 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 133 KRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG 192
K+ R ST EVYGD +H + ++ P S Y K ++ L+ + R +G
Sbjct: 123 KKSAFRFHHISTDEVYGD--LH-STDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 193 IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLI 252
+ I N YGP + +++ I AL G+ L V G Q R + YV D L
Sbjct: 180 LPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALY 237
Query: 253 RLMEGENTGPV-NIGNPGEFTMLELAETVKELINP-------GIE-----IKMVENTPDD 299
+ G NIG E L++ ET+ EL+ G+ I V + P
Sbjct: 238 CVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHYRDLITFVADRPGH 297
Query: 300 PRQRKPDISKAKELLGWEPKVKLRDGL 326
+ D SK LG P+ G+
Sbjct: 298 DLRYAIDASKIARELGCVPQETFESGM 324
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 124/271 (45%), Gaps = 27/271 (9%)
Query: 29 NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVADNYFTGS--KDNLKKWIGHPRF----- 80
N IL+TGGAGF+GS+L EN K +V+V D + + + +N +GH +
Sbjct: 10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFK 69
Query: 81 -ELIRHDVTEPL------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 133
E+I D+ PL + D ++H A + N +KTN LN+L +A+
Sbjct: 70 GEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTM--LNQELVMKTNYQAFLNLLEIAR 127
Query: 134 RVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 193
A+++ S++ VYG+ P N +P + Y K + + H +
Sbjct: 128 SKKAKVIYASSAGVYGNT---KAPNVVGKNESP---ENVYGFSKLCMDEFVLS-HSNDNV 180
Query: 194 QIRIARIFNTYGPRMNIDD--GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL 251
Q+ + R FN YGPR + +V A+ + + + + G Q R F Y+ D++
Sbjct: 181 QVGL-RYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQAN 239
Query: 252 IRLMEGENTGPVNIGNPGEFTMLELAETVKE 282
++ M+ + +G N+G + E+ +KE
Sbjct: 240 VKAMKAQKSGVYNVGYSQARSYNEIVSILKE 270
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 143/321 (44%), Gaps = 34/321 (10%)
Query: 33 LVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL---------KKWIGHPRFELI 83
L+TG AGFIGS+L++ L++ ++ +V+ DN+ TG + NL K+W F+ I
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQ-KVVGLDNFATGHQRNLDEVRSLVSEKQW---SNFKFI 86
Query: 84 RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138
+ D+ VD + H A S +P+ + TN+ G LNML A+ +
Sbjct: 87 QGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ 146
Query: 139 -ILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRI 197
++S YGD P+ E G P+ S Y K V E + R +G
Sbjct: 147 SFTYAASSSTYGDHPGLPKVEDTIG--KPL---SPYAVTKYVNELYADVFSRCYGFSTIG 201
Query: 198 ARIFNTYGPRM--NIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDG-LIRL 254
R FN +G R N V+ + + ++G+ + + G +R FCY+ + V L+
Sbjct: 202 LRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAA 261
Query: 255 MEGENT--GPVNIGNPGEFTMLELAETVKE-LINPGIEIKMVENTPD----DPRQRKPDI 307
G + NI G ++ +L +++ L G+ D D R DI
Sbjct: 262 TAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADI 321
Query: 308 SKAKELLGWEPKVKLRDGLPL 328
SKA +LLG+ PK + G+ L
Sbjct: 322 SKAAKLLGYAPKYDVSAGVAL 342
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 143/333 (42%), Gaps = 33/333 (9%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF-TGSKDNLKKWIGHPRFELI------ 83
++L+TGG GF+GS+L + + ++IV DN G+ DNL FE +
Sbjct: 3 KLLITGGCGFLGSNLASFALS-QGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 61
Query: 84 RHDVTEPLLIEV-DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RIL 140
++DVT + + D +HLA + NP + NV GTLN+L ++ + I+
Sbjct: 62 KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 121
Query: 141 LTSTSEVYGD--PLIHPQPETYWGNVNP---------IGVRSCYDEGKRVAETLMFDYHR 189
+ST++VYGD + + ET + V+ + S Y K A+ M DY R
Sbjct: 122 YSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR 181
Query: 190 QHGIQIRIARIFNTYGPR-MNIDDGRVVSNFIAQALR-----GEPLTVQKPGTQTRSFCY 243
G+ + R + YG R D V F +A+ +P T+ G Q R +
Sbjct: 182 IFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLH 241
Query: 244 VSDMVDGLIRLMEGENT---GPVNIGNP--GEFTMLELAETVKELINPGIEIKMVENTPD 298
DM+ + + NIG ++LEL + +++ N + +
Sbjct: 242 AEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRES 301
Query: 299 DPRQRKPDISKAKELLGWEPKVKLRDGLPLMEE 331
D R DI K + W PKV +DG+ M +
Sbjct: 302 DQRVFVADIKKITNAIDWSPKVSAKDGVQKMYD 334
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 141/328 (42%), Gaps = 42/328 (12%)
Query: 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT 88
+MR L+TG AGF+G +L + L E + EV F S++N K P E+I D+
Sbjct: 12 SMRALITGVAGFVGKYLANHLTE-QNVEV------FGTSRNNEAKL---PNVEMISLDIM 61
Query: 89 EPLL-------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK--RVGARI 139
+ I+ D I+HLA +S N T TNV GTL++L + + RI
Sbjct: 62 DSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRI 121
Query: 140 LLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIAR 199
L +SE YG L P + + P+ S Y K L Y + +G+ I R
Sbjct: 122 LTIGSSEEYGMILPEESPVSEENQLRPM---SPYGVSKASVGMLARQYVKAYGMDIIHTR 178
Query: 200 IFNTYGPRMNIDDGRVVSNFIAQAL-----RGEPLTVQKPGTQTRSFCYVSDMVDGLIRL 254
FN GP ++ G V +F Q + + EP+ R F V D+V L
Sbjct: 179 TFNHIGPGQSL--GFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLL 236
Query: 255 MEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDI------- 307
+ TG V G T + + V +L+ +K+ +T +P Q +P
Sbjct: 237 SQYGKTGDVYNVCSGIGTRI---QDVLDLLLAMANVKI--DTELNPLQLRPSEVPTLIGS 291
Query: 308 -SKAKELLGWEPKVKLRDGLPLMEEDFR 334
+ K+ GW+P++ L L + + +R
Sbjct: 292 NKRLKDSTGWKPRIPLEKSLFEILQSYR 319
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 132/306 (43%), Gaps = 29/306 (9%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
S+MRIL+TGGAG +GS+L++ + + +E++V DN+ TG ++ L G +I V
Sbjct: 19 SHMRILITGGAGCLGSNLIEHWLP-QGHEILVIDNFATGKREVLPPVAG---LSVIEGSV 74
Query: 88 TEPLLIE--VDQIYHLACPASPIFYKYNP---VKTIKTNVIGTLNMLGLAKRVGARILLT 142
T+ L+E D S YK +P + TNV G++N+ A + G + LL
Sbjct: 75 TDAGLLERAFDSFKPTHVVHSAAAYK-DPDDWAEDAATNVQGSINVAKAASKAGVKRLLN 133
Query: 143 -STSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIF 201
T+ YG P P P +P + Y K E + + + R+
Sbjct: 134 FQTALCYGRPATVPIPID-----SPTAPFTSYGISKTAGEAFLM----MSDVPVVSLRLA 184
Query: 202 NTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVD-GLIRLMEGENT 260
N GPR+ I + F + G+ R F +SD + + L EG T
Sbjct: 185 NVTGPRLAIGP---IPTFYKRLKAGQKCFCSD---TVRDFLDMSDFLAIADLSLQEGRPT 238
Query: 261 GPVNIGNPGEFTMLELAETVKELINPGIE--IKMVENTPDDPRQRKPDISKAKELLGWEP 318
G N+ ++ E+ + V + + + + +V DD D SK + GW+
Sbjct: 239 GVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPSVVLDPSKTETEFGWKA 298
Query: 319 KVKLRD 324
KV +D
Sbjct: 299 KVDFKD 304
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/365 (21%), Positives = 146/365 (40%), Gaps = 78/365 (21%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF--TGSKDNLKKWIGHPRFELIRH 85
S+MR+LV GGAG+IGSH V L+ + + V++ D+ G D+++ R +L +
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVAR-KLQQS 59
Query: 86 DVTEPLLIE-------------------------VDQIYHLACPASPIFYKYNPVKTIKT 120
D +P + +D + H+ + +P+K
Sbjct: 60 DGPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDN 119
Query: 121 NVIGTLNML-GLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGV------RSCY 173
NV+G L +L + +I+ +S++ ++G+P + + N PI + S Y
Sbjct: 120 NVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTM----GSVSTNAEPIDINAKKSPESPY 175
Query: 174 DEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGR-----------VVSNFIAQ 222
E K +AE ++ D +GI+ R FN G + D G ++ ++
Sbjct: 176 GESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSD 235
Query: 223 ALRGEPLTVQK------------------PGTQTRSFCYVSDMVDGLIRLMEG-ENTGP- 262
+ LT+ + GT R + +V D+ I ++ E GP
Sbjct: 236 IAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPN 295
Query: 263 --------VNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELL 314
N+G +++ E+ E ++ I ++ DP KA+E+L
Sbjct: 296 DKSKYFSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVL 355
Query: 315 GWEPK 319
GW+PK
Sbjct: 356 GWKPK 360
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 139/320 (43%), Gaps = 41/320 (12%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIG--HPRFELIRH 85
MR+LVTGG+G+IGSH +L++N ++VI+ DN + L + +G HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 86 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 139 -ILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIQI 195
+ +ST+ VYGD P E++ P G +S Y + K + E ++ D + Q I
Sbjct: 118 NFIFSSTATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 196 RIARIFNTYGPRMNID---DGRVVSN----FIAQALRG--EPLTV------QKPGTQTRS 240
+ R FN G + D D + + N +IAQ G + L + + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 241 FCYVSDMVDGLIRLMEGENTGP----VNIGNPGEFTMLELAETVKELINPGIEIKMVENT 296
+ +V D+ DG + ME P N+G ++L++ + +
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 297 PDDPRQRKPDISKAKELLGW 316
D D SKA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 139/320 (43%), Gaps = 41/320 (12%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIG--HPRFELIRH 85
MR+LVTGG+G+IGSH +L++N ++VI+ DN + L + +G HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 86 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 139 -ILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIQI 195
+ +S++ VYGD QP+ + P G +S Y + K + E ++ D + Q I
Sbjct: 118 NFIFSSSATVYGD-----QPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 196 RIARIFNTYGPRMNID---DGRVVSN----FIAQALRG--EPLTV------QKPGTQTRS 240
+ R FN G + D D + + N +IAQ G + L + + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 241 FCYVSDMVDGLIRLMEGENTGP----VNIGNPGEFTMLELAETVKELINPGIEIKMVENT 296
+ +V D+ DG + ME P N+G ++L++ + +
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 297 PDDPRQRKPDISKAKELLGW 316
D D SKA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 138/320 (43%), Gaps = 41/320 (12%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIG--HPRFELIRH 85
MR+LVTGG+G+IGSH +L++N ++VI+ DN + L + +G HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 86 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 139 -ILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIQI 195
+ +S + VYGD QP+ + P G +S Y + K + E ++ D + Q I
Sbjct: 118 NFIFSSAATVYGD-----QPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 196 RIARIFNTYGPRMNID---DGRVVSN----FIAQALRG--EPLTV------QKPGTQTRS 240
+ R FN G + D D + + N +IAQ G + L + + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 241 FCYVSDMVDGLIRLMEGENTGP----VNIGNPGEFTMLELAETVKELINPGIEIKMVENT 296
+ +V D+ DG + ME P N+G ++L++ + +
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 297 PDDPRQRKPDISKAKELLGW 316
D D SKA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 139/320 (43%), Gaps = 41/320 (12%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIG--HPRFELIRH 85
MR+LVTGG+G+IGSH +L++N ++VI+ DN + L + +G HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 86 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 139 -ILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIQI 195
+ +S++ VYGD P E++ P G +S Y + K + E ++ D + Q I
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 196 RIARIFNTYGPRMNID---DGRVVSN----FIAQALRG--EPLTV------QKPGTQTRS 240
+ R FN G + D D + + N +IAQ G + L + + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 241 FCYVSDMVDGLIRLMEGENTGP----VNIGNPGEFTMLELAETVKELINPGIEIKMVENT 296
+ +V D+ DG + ME P N+G ++L++ + +
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 297 PDDPRQRKPDISKAKELLGW 316
D D SKA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 139/320 (43%), Gaps = 41/320 (12%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIG--HPRFELIRH 85
MR+LVTGG+G+IGSH +L++N ++VI+ DN + L + +G HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 86 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 139 -ILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIQI 195
+ +S++ VYGD P E++ P G +S Y + K + E ++ D + Q I
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 196 RIARIFNTYGPRMNID---DGRVVSN----FIAQALRG--EPLTV------QKPGTQTRS 240
+ R FN G + D D + + N +IAQ G + L + + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 241 FCYVSDMVDGLIRLMEGENTGP----VNIGNPGEFTMLELAETVKELINPGIEIKMVENT 296
+ +V D+ DG + ME P N+G ++L++ + +
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 297 PDDPRQRKPDISKAKELLGW 316
D D SKA L W
Sbjct: 293 EGDLPACWADASKADRELNW 312
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 138/320 (43%), Gaps = 41/320 (12%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIG--HPRFELIRH 85
MR+LVTGG+G+IGSH +L++N ++VI+ DN + L + +G HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 86 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 139 -ILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIQI 195
+ +S + VYGD P E++ P G +S Y + K + E ++ D + Q I
Sbjct: 118 NFIFSSAATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 196 RIARIFNTYGPRMNID---DGRVVSN----FIAQALRG--EPLTV------QKPGTQTRS 240
+ R FN G + D D + + N +IAQ G + L + + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 241 FCYVSDMVDGLIRLMEGENTGP----VNIGNPGEFTMLELAETVKELINPGIEIKMVENT 296
+ +V D+ DG + ME P N+G ++L++ + +
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 297 PDDPRQRKPDISKAKELLGW 316
D D SKA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 138/320 (43%), Gaps = 41/320 (12%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIG--HPRFELIRH 85
MR+LVTGG+G+IGSH +L++N ++VI+ DN + L + +G HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 86 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 139 -ILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIQI 195
+ +S + VYGD P E++ P G +S Y + K + E ++ D + Q I
Sbjct: 118 NFIFSSVATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 196 RIARIFNTYGPRMNID---DGRVVSN----FIAQALRG--EPLTV------QKPGTQTRS 240
+ R FN G + D D + + N +IAQ G + L + + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 241 FCYVSDMVDGLIRLMEGENTGP----VNIGNPGEFTMLELAETVKELINPGIEIKMVENT 296
+ +V D+ DG + ME P N+G ++L++ + +
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 297 PDDPRQRKPDISKAKELLGW 316
D D SKA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 139/320 (43%), Gaps = 41/320 (12%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIG--HPRFELIRH 85
MR+LVTGG+G+IGSH +L++N ++VI+ DN + L + +G HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 86 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 139 -ILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIQI 195
+ +S++ VYGD QP+ + P G +S + + K + E ++ D + Q I
Sbjct: 118 NFIFSSSATVYGD-----QPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSI 172
Query: 196 RIARIFNTYGPRMNID---DGRVVSN----FIAQALRG--EPLTV------QKPGTQTRS 240
+ R FN G + D D + + N +IAQ G + L + + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 241 FCYVSDMVDGLIRLMEGENTGP----VNIGNPGEFTMLELAETVKELINPGIEIKMVENT 296
+ +V D+ DG + ME P N+G ++L++ + +
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 297 PDDPRQRKPDISKAKELLGW 316
D D SKA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 41/320 (12%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIG--HPRFELIRH 85
MR+LVTGG+G+IGSH +L++N ++VI+ DN + L + +G HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 86 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 139 -ILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIQI 195
+ +S + VYGD QP+ + P G +S + + K + E ++ D + Q I
Sbjct: 118 NFIFSSAATVYGD-----QPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSI 172
Query: 196 RIARIFNTYGPRMNID---DGRVVSN----FIAQALRG--EPLTV------QKPGTQTRS 240
+ R FN G + D D + + N +IAQ G + L + + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 241 FCYVSDMVDGLIRLMEGENTGP----VNIGNPGEFTMLELAETVKELINPGIEIKMVENT 296
+ +V D+ DG + ME P N+G ++L++ + +
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 297 PDDPRQRKPDISKAKELLGW 316
D D SKA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 41/320 (12%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIG--HPRFELIRH 85
MR+LVTGG+G+IGSH +L++N ++VI+ DN + L + +G HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 86 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 139 -ILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIQI 195
+ +S + VYGD P E++ P G +S + + K + E ++ D + Q I
Sbjct: 118 NFIFSSAATVYGDNPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSI 172
Query: 196 RIARIFNTYGPRMNID---DGRVVSN----FIAQALRG--EPLTV------QKPGTQTRS 240
+ R FN G + D D + + N +IAQ G + L + + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 241 FCYVSDMVDGLIRLMEGENTGP----VNIGNPGEFTMLELAETVKELINPGIEIKMVENT 296
+ +V D+ DG + ME P N+G ++L++ + +
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 297 PDDPRQRKPDISKAKELLGW 316
D D SKA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 125/300 (41%), Gaps = 27/300 (9%)
Query: 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT 88
+MRILVTGG+G +G + K++ + + D F SKD +L T
Sbjct: 7 SMRILVTGGSGLVGK-AIQKVVADGAG-LPGEDWVFVSSKDA----------DLTDTAQT 54
Query: 89 EPLLIEVD--QIYHLACPASPIF--YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144
L +V + HLA +F KYN + + NV N+L A VGAR +++
Sbjct: 55 RALFEKVQPTHVIHLAAMVGGLFRNIKYN-LDFWRKNVHMNDNVLHSAFEVGARKVVSCL 113
Query: 145 SE-VYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNT 203
S ++ D +P ET N P Y KR+ + Y +Q+G N
Sbjct: 114 STCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNV 173
Query: 204 YGPR--MNIDDGRVVSNFIAQA----LRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257
+GP NI+DG V+ I + G LTV G R F Y D+ I ++
Sbjct: 174 FGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLRE 233
Query: 258 EN-TGPV--NIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELL 314
N P+ ++G E ++ E AE V E ++ E+ D ++ SK + L
Sbjct: 234 YNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYL 293
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 125/300 (41%), Gaps = 27/300 (9%)
Query: 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT 88
+MRILVTGG+G +G + K++ + + D F SKD +L T
Sbjct: 6 SMRILVTGGSGLVGK-AIQKVVADGAG-LPGEDWVFVSSKDA----------DLTDTAQT 53
Query: 89 EPLLIEVD--QIYHLACPASPIF--YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144
L +V + HLA +F KYN + + NV N+L A VGAR +++
Sbjct: 54 RALFEKVQPTHVIHLAAMVGGLFRNIKYN-LDFWRKNVHMNDNVLHSAFEVGARKVVSCL 112
Query: 145 SE-VYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNT 203
S ++ D +P ET N P Y KR+ + Y +Q+G N
Sbjct: 113 STCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNV 172
Query: 204 YGPR--MNIDDGRVVSNFIAQA----LRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257
+GP NI+DG V+ I + G LTV G R F Y D+ I ++
Sbjct: 173 FGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLRE 232
Query: 258 EN-TGPV--NIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELL 314
N P+ ++G E ++ E AE V E ++ E+ D ++ SK + L
Sbjct: 233 YNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYL 292
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 116/297 (39%), Gaps = 33/297 (11%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPR---FELIRHD 86
++I VTGG GF+G ++V+ + +N+ N I+ L + IG+ +E D
Sbjct: 3 LKIAVTGGTGFLGQYVVESI-KNDGNTPII-----------LTRSIGNKAINDYEYRVSD 50
Query: 87 VTEPLLI----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILL 141
T LI +VD + HLA + N I T N+ + I+
Sbjct: 51 YTLEDLINQLNDVDAVVHLAATRGS----QGKISEFHDNEILTQNLYDACYENNISNIVY 106
Query: 142 TSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIF 201
ST Y D P W Y K E + Y R+ G+ I+ R
Sbjct: 107 ASTISAYSDETSLP-----WNEKELPLPDLXYGVSKLACEHIGNIYSRKKGLCIKNLRFA 161
Query: 202 NTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN-T 260
+ YG N + ++ F QA GE LT+ R F Y D +I ++ E +
Sbjct: 162 HLYG--FNEKNNYXINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVS 219
Query: 261 GPVNIGNPGEFTMLELAETVKELI-NPGIEIKMVENTPDDPRQRKPDISKAKELLGW 316
G NIG+ T E+A T+ N + N + D SKAKELL +
Sbjct: 220 GTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYXDSSKAKELLDF 276
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 143/332 (43%), Gaps = 45/332 (13%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL-------KKWIGHPRFELIR 84
+LVTGGAG+IGSH V +L+EN + +VADN + D++ K I +L
Sbjct: 14 VLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD 72
Query: 85 HDVTEPLLIE--VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILL 141
E + E +D + H A + P++ N++GT+ +L L ++ ++ +
Sbjct: 73 RKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVF 132
Query: 142 TSTSEVYGD----PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHR--QHGIQI 195
+S++ VYGD P + P PE P+G + Y K E ++ D + + +
Sbjct: 133 SSSATVYGDATRFPNMIPIPEE-----CPLGPTNPYGHTKYAIENILNDLYNSDKKSWKF 187
Query: 196 RIARIFNTYGPR---MNIDDGRVVSN----FIAQALRG--EPLTV------QKPGTQTRS 240
I R FN G + +D + N ++AQ G E L + + GT R
Sbjct: 188 AILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRD 247
Query: 241 FCYVSDMVDGLIRLME-----GENTGPV---NIGNPGEFTMLELAETVKELINPGIEIKM 292
+ +V D+ G I ++ EN G N+G+ T+ E+ + + K+
Sbjct: 248 YIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKV 307
Query: 293 VENTPDDPRQRKPDISKAKELLGWEPKVKLRD 324
D +AK L W+ ++++ D
Sbjct: 308 TGRRAGDVLNLTAKPDRAKRELKWQTELQVED 339
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 145/340 (42%), Gaps = 47/340 (13%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVAD--NYFTGS----------KDNLKKWIGHP 78
++LVTGGAG+IGSH V +L+E V++ + N F G ++ + +
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 79 RFELIRHDVTEPLLIEVD--QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 136
+++ + L + + H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 137 AR-ILLTSTSEVYGDPLIHPQPETY--WGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 193
+ ++ +S++ VYG+P P E + G NP Y + K E ++ D +
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP------YGKSKFFIEEMIRDLCQADKT 177
Query: 194 -QIRIARIFNTYGPRMN---IDDGRVVSN----FIAQALRG--EPLTV------QKPGTQ 237
+ + R FN G + +D + + N +++Q G E L V + GT
Sbjct: 178 WNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 238 TRSFCYVSDMVDGLI----RLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMV 293
R + +V D+ G I +L E N+G +++L++ + +++ I K+V
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVV 297
Query: 294 ENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDF 333
D + S A+E LGW + GL M ED
Sbjct: 298 ARREGDVAACYANPSLAQEELGWTAAL----GLDRMCEDL 333
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 145/340 (42%), Gaps = 47/340 (13%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVAD--NYFTGS----------KDNLKKWIGHP 78
++LVTGGAG+IGSH V +L+E V++ + N F G ++ + +
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 79 RFELIRHDVTEPLLIEVD--QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 136
+++ + L + + H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 137 AR-ILLTSTSEVYGDPLIHPQPETY--WGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 193
+ ++ +S++ VYG+P P E + G NP Y + K E ++ D +
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP------YGKSKFFIEEMIRDLCQADKT 177
Query: 194 -QIRIARIFNTYGPRMN---IDDGRVVSN----FIAQALRG--EPLTV------QKPGTQ 237
+ + R FN G + +D + + N +++Q G E L V + GT
Sbjct: 178 WNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 238 TRSFCYVSDMVDGLI----RLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMV 293
R + +V D+ G I +L E N+G +++L++ + +++ I K+V
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVV 297
Query: 294 ENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDF 333
D + S A+E LGW + GL M ED
Sbjct: 298 ARREGDVAACYANPSLAQEELGWTAAL----GLDRMCEDL 333
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 131/329 (39%), Gaps = 41/329 (12%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
S R+ + G G +GS + +L + E+++ ++D L + +
Sbjct: 2 SKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLR------TRDELNLLDSRAVHDFFASE- 54
Query: 88 TEPLLIEVDQIYHLACPASPIFYKYN-PVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 145
+DQ+Y A I P I N++ N++ A + ++L +S
Sbjct: 55 ------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSS 108
Query: 146 EVYGDPLIHPQP----ETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIF 201
+Y P + QP E G + P Y K L Y+RQ+G R
Sbjct: 109 CIY--PKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPT 164
Query: 202 NTYGPRMNI--DDGRVVSNFI-----AQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRL 254
N YGP N + V+ + A A + V GT R F +V DM I +
Sbjct: 165 NLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHV 224
Query: 255 MEG------ENTGP----VNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRK 304
ME ENT P +N+G + T+ ELA+T+ +++ + + PD ++
Sbjct: 225 MELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKL 284
Query: 305 PDISKAKELLGWEPKVKLRDGLPLMEEDF 333
D+++ + LGW ++ L GL + F
Sbjct: 285 LDVTRLHQ-LGWYHEISLEAGLASTYQWF 312
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 130/322 (40%), Gaps = 41/322 (12%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
+ R+ + G G +GS + +L + E+++ ++D L + +
Sbjct: 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLR------TRDELNLLDSRAVHDFFASE- 54
Query: 88 TEPLLIEVDQIYHLACPASPIFYKYN-PVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 145
+DQ+Y A I P I N++ N++ A + ++L +S
Sbjct: 55 ------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSS 108
Query: 146 EVYGDPLIHPQP----ETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIF 201
+Y P + QP E G + P Y K L Y+RQ+G R
Sbjct: 109 CIY--PKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPT 164
Query: 202 NTYGPRMNI--DDGRVVSNFI-----AQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRL 254
N YGP N + V+ + A A + + V GT R F +V DM I +
Sbjct: 165 NLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHV 224
Query: 255 MEG------ENTGP----VNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRK 304
ME ENT P +N+G + T+ ELA+T+ +++ + + PD ++
Sbjct: 225 MELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKL 284
Query: 305 PDISKAKELLGWEPKVKLRDGL 326
D+++ + LGW ++ L GL
Sbjct: 285 LDVTRLHQ-LGWYHEISLEAGL 305
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 143/323 (44%), Gaps = 40/323 (12%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD---NLKKWIGH-PRFELIRHDV 87
ILVTGGAG+IGSH +L+ + +V++ADN ++ ++K G P F DV
Sbjct: 8 ILVTGGAGYIGSHTAVELLAH-GYDVVIADNLVNSKREAIARIEKITGKTPAFH--ETDV 64
Query: 88 TEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK-RVGARI 139
++ + + H A + P++ + N+ L++L + + R RI
Sbjct: 65 SDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRI 124
Query: 140 LLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-GIQIRIA 198
+ +S++ VYG P P ET+ P+ + Y + K +AE ++ D ++
Sbjct: 125 VFSSSATVYGVPERSPIDETF-----PLSATNPYGQTKLMAEQILRDVEAADPSWRVATL 179
Query: 199 RIFNTYGPR----MNIDDGRVVSN---FIAQALRG--EPLTV------QKPGTQTRSFCY 243
R FN G + D + +N ++AQ G E L V GT R + +
Sbjct: 180 RYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIH 239
Query: 244 VSDMVDGLIRLMEG----ENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDD 299
V D+ G I ++ + + VN+G +++LE+ ++ + ++V P D
Sbjct: 240 VVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGD 299
Query: 300 PRQRKPDISKAKELLGWEPKVKL 322
+ + + A E +GW+ + L
Sbjct: 300 VAECYANPAAAAETIGWKAERDL 322
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 131/329 (39%), Gaps = 41/329 (12%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
S R+ + G G +GS + +L + E+++ ++D L + +
Sbjct: 2 SKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLR------TRDELNLLDSRAVHDFFASE- 54
Query: 88 TEPLLIEVDQIYHLACPASPIFYKYN-PVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 145
+DQ+Y A I P I N++ N++ A + ++L +S
Sbjct: 55 ------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSS 108
Query: 146 EVYGDPLIHPQP----ETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIF 201
+Y P + QP E G + P Y + L Y+RQ+G R
Sbjct: 109 CIY--PKLAKQPMAESELLQGTLEP--TNEPYAIARIAGIKLCESYNRQYGRDYRSVMPT 164
Query: 202 NTYGPRMNI--DDGRVVSNFI-----AQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRL 254
N YGP N + V+ + A A + V GT R F +V DM I +
Sbjct: 165 NLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHV 224
Query: 255 MEG------ENTGP----VNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRK 304
ME ENT P +N+G + T+ ELA+T+ +++ + + PD ++
Sbjct: 225 MELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKL 284
Query: 305 PDISKAKELLGWEPKVKLRDGLPLMEEDF 333
D+++ + LGW ++ L GL + F
Sbjct: 285 LDVTRLHQ-LGWYHEISLEAGLASTYQWF 312
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 144/340 (42%), Gaps = 47/340 (13%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVAD--NYFTGS----------KDNLKKWIGHP 78
++LVTGGAG+IGSH V +L+E V++ + N F G ++ + +
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 79 RFELIRHDVTEPLLIEVD--QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 136
+++ + L + + H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 137 AR-ILLTSTSEVYGDPLIHPQPETY--WGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 193
+ ++ +S++ VYG+P P E + G NP Y + K E ++ D +
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP------YGKSKFFIEEMIRDLCQADKT 177
Query: 194 -QIRIARIFNTYGPRMN---IDDGRVVSN----FIAQALRG--EPLTV------QKPGTQ 237
+ R FN G + +D + + N +++Q G E L V + GT
Sbjct: 178 WNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 238 TRSFCYVSDMVDGLI----RLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMV 293
R + +V D+ G I +L E N+G +++L++ + +++ I K+V
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVV 297
Query: 294 ENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDF 333
D + S A+E LGW + GL M ED
Sbjct: 298 ARREGDVAACYANPSLAQEELGWTAAL----GLDRMCEDL 333
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 119/282 (42%), Gaps = 36/282 (12%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
++ +TG G IGSH+ + L+E ++V+ DN+ TG +++LK HP + + +
Sbjct: 23 KVFITGICGQIGSHIAELLLE-RGDKVVGIDNFATGRREHLKD---HPNLTFVEGSIADH 78
Query: 91 LLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILL 141
L+ + D + H A YN TN +G N++ AK+ VG R +
Sbjct: 79 ALVNQLIGDLQPDAVVHTAASYKDPDDWYN---DTLTNCVGGSNVVQAAKKNNVG-RFVY 134
Query: 142 TSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIF 201
T+ YG I QP NP S Y K E DY G+ R+
Sbjct: 135 FQTALCYGVKPIQ-QPVRLDHPRNP--ANSSYAISKSANE----DYLEYSGLDFVTFRLA 187
Query: 202 NTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTG 261
N GPR N+ + F + G+ V K R F +V D+ +R ++G G
Sbjct: 188 NVVGPR-NVSGPLPI--FFQRLSEGKKCFVTK---ARRDFVFVKDLARATVRAVDGVGHG 241
Query: 262 PVNIGNPGEFTMLELAETVKELIN----PGIEIKMVENTPDD 299
+ + + + EL + V E + P EI+ E PDD
Sbjct: 242 AYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIR--ELGPDD 281
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 131/329 (39%), Gaps = 41/329 (12%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
S R+ + G G +GS + +L + E+++ ++D L + +
Sbjct: 2 SKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLR------TRDELNLLDSRAVHDFFASE- 54
Query: 88 TEPLLIEVDQIYHLACPASPIFYKYN-PVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 145
+DQ+Y A I P I N++ N++ A + ++L +S
Sbjct: 55 ------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSS 108
Query: 146 EVYGDPLIHPQP----ETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIF 201
+Y P + QP E G + P Y K L Y+RQ+G R
Sbjct: 109 CIY--PKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPT 164
Query: 202 NTYGPRMNI--DDGRVVSNFI-----AQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRL 254
N YGP N + V+ + A A + V GT R F +V DM I +
Sbjct: 165 NLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHV 224
Query: 255 MEG------ENTGP----VNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRK 304
ME ENT P +N+G + T+ +LA+T+ +++ + + PD ++
Sbjct: 225 MELAHEVWLENTQPMLSHINVGTGVDCTIRDLAQTIAKVVGYKGRVVFDASKPDGTPRKL 284
Query: 305 PDISKAKELLGWEPKVKLRDGLPLMEEDF 333
D+++ + LGW ++ L GL + F
Sbjct: 285 LDVTRLHQ-LGWYHEISLEAGLASTYQWF 312
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 130/329 (39%), Gaps = 41/329 (12%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
+ R+ + G G +GS + +L + E+++ ++D L + +
Sbjct: 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLR------TRDELNLLDSRAVHDFFASE- 54
Query: 88 TEPLLIEVDQIYHLACPASPIFYKYN-PVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 145
+DQ+Y A I P I N++ N++ A + ++L S
Sbjct: 55 ------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGAS 108
Query: 146 EVYGDPLIHPQP----ETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIF 201
+Y P + QP E G + P Y K L Y+RQ+G R
Sbjct: 109 CIY--PKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPT 164
Query: 202 NTYGPRMNI--DDGRVVSNFI-----AQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRL 254
N YGP N + V+ + A A + V GT R F +V DM I +
Sbjct: 165 NLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHV 224
Query: 255 MEG------ENTGP----VNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRK 304
ME ENT P +N+G + T+ ELA+T+ +++ + + PD ++
Sbjct: 225 MELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKL 284
Query: 305 PDISKAKELLGWEPKVKLRDGLPLMEEDF 333
D+++ + LGW ++ L GL + F
Sbjct: 285 LDVTRLHQ-LGWYHEISLEAGLASTYQWF 312
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 133/326 (40%), Gaps = 49/326 (15%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
S R+ + G G +GS + +L + E+++ ++D L + +
Sbjct: 2 SKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLR------TRDELNLLDSRAVHDFFASE- 54
Query: 88 TEPLLIEVDQIYHLACPASPIFYKYN-PVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 145
+DQ+Y A I P I N++ N++ A + ++L +S
Sbjct: 55 ------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSS 108
Query: 146 EVYGDPLIHPQP----ETYWGNVNPIGVRSCYDEGKRVAET----LMFDYHRQHGIQIRI 197
+Y P + QP E G + P +E + +A+ L Y+RQ+G R
Sbjct: 109 CIY--PKLAKQPMAESELLQGTLEPT------NEPEAIAKIAGIKLCESYNRQYGRDYRS 160
Query: 198 ARIFNTYGPRMNI--DDGRVVSNFI-----AQALRGEPLTVQKPGTQTRSFCYVSDMVDG 250
N YGP N + V+ + A A + V GT R F +V DM
Sbjct: 161 VMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAA 220
Query: 251 LIRLMEG------ENTGP----VNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDP 300
I +ME ENT P +N+G + T+ ELA+T+ +++ + + PD
Sbjct: 221 SIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGT 280
Query: 301 RQRKPDISKAKELLGWEPKVKLRDGL 326
++ D+++ + LGW ++ L GL
Sbjct: 281 PRKLLDVTRLHQ-LGWYHEISLEAGL 305
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 139/346 (40%), Gaps = 80/346 (23%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS------------KDNLKKWIGHP 78
R+ VTG GF GS L L E + Y + D ++ IG
Sbjct: 11 RVFVTGHTGFKGSWLSLWLTEMGA----IVKGYALDAPTVPSLFEIVRLNDLMESHIGDI 66
Query: 79 R-FELIRHDVTEPLLIEVDQIYHLAC-PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 136
R FE +R + E + + ++H+A P + Y+ P+KT TNV+GT+++L K+VG
Sbjct: 67 RDFEKLRSSIAE---FKPEIVFHMAAQPLVRLSYE-QPIKTYSTNVMGTVHLLETVKQVG 122
Query: 137 -ARILLTSTSEVYGDPLIHPQPETYWG--NVNPIGVRSCYDEGKRVAETLMFDY------ 187
+ ++ TS+ D E WG P+G Y K AE + +
Sbjct: 123 NIKAVVNITSDKCYD-----NREWVWGYRENEPMGGYDPYSNSKGCAELVASAFRNSFFN 177
Query: 188 ---HRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYV 244
+ QHG+ + R N G D R++ + + + + ++ P R + +V
Sbjct: 178 PANYEQHGVGLASVRAGNVIGGGDWAKD-RLIPDILRSFENNQQVIIRNP-YSIRPWQHV 235
Query: 245 SDMVDGLI-----------RLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMV 293
+ + G I + EG N GP + E A+TV+ +++ KMV
Sbjct: 236 LEPLSGYIVVAQRLYTEGAKFSEGWNFGPRD----------EDAKTVEFIVD-----KMV 280
Query: 294 -------------ENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 326
EN P + K D SKA LGW P+ L + L
Sbjct: 281 TLWGDDASWLLDGENHPHEAHYLKLDCSKANMQLGWHPRWGLTETL 326
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 140/349 (40%), Gaps = 60/349 (17%)
Query: 33 LVTGGAGFIGSHLVDKLMENEKNEVIV---ADNYFTGSKDNLKK--WIGHPRFELIRHDV 87
L+TG G GS+L + L+E + A ++ T D++ + +P+F L D+
Sbjct: 5 LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDL 64
Query: 88 TEP-----LLIEV--DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG---- 136
++ +L EV D++Y+L + +P T + +GTL +L + +G
Sbjct: 65 SDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKK 124
Query: 137 ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIR 196
R STSE+YG PQ ET P RS Y K A + +Y +G+
Sbjct: 125 TRFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGMYAC 179
Query: 197 IARIFNTYGPR-----MNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL 251
+FN PR + R ++N IAQ L E R + + D V
Sbjct: 180 NGILFNHESPRRGETFVTRKITRAIAN-IAQGL--ESCLYLGNMDSLRDWGHAKDYVKMQ 236
Query: 252 IRLMEGENTGPVNIGNPGEFTMLELAETVKELI-------NPGIEIKMV------ENTPD 298
+++ E I ++++ + E + G+E K + + P
Sbjct: 237 WMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPG 296
Query: 299 ----------DPRQRKP--------DISKAKELLGWEPKVKLRDGLPLM 329
DPR +P D +KA E LGW+P++ LR+ + M
Sbjct: 297 VKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEM 345
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 136/332 (40%), Gaps = 46/332 (13%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL 91
ILVTG +G IG+ LV L E + ++A D +++ G +F I DV+
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIA-------SDIVQRDTGGIKF--ITLDVSNRD 52
Query: 92 LIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK--RVGARILLT 142
I+ +D I+HLA S K +P K N+ GT N+L AK RV ++++
Sbjct: 53 EIDRAVEKYSIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRV-EKVVIP 110
Query: 143 STSEVYGDPLIHPQPETYWGNVNPIGV---RSCYDEGKRVAETLMFDYHRQHGIQIRIAR 199
ST V+G PET V I + R+ Y K AE L Y+ + G+ +R R
Sbjct: 111 STIGVFG-------PETPKNKVPSITITRPRTMYGVTKIAAELLGQYYYEKFGLDVRSLR 163
Query: 200 ----IFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255
I P D V A++ E + Y+ D + L+ L
Sbjct: 164 YPGIISYKAEPTAGTTDYAV--EIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLY 221
Query: 256 EGENTGPV-----NIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKP---DI 307
E + V N+ FT EL +KE I P EI+ E+ D P D
Sbjct: 222 EADRDKLVLRNGYNV-TAYTFTPSELYSKIKERI-PEFEIEYKEDFRDKIAATWPESLDS 279
Query: 308 SKAKELLGWEPKVKLRDGLPLMEEDFRSRLGV 339
S+A G+ + L + M + +LG+
Sbjct: 280 SEASNEWGFSIEYDLDRTIDDMIDHISEKLGI 311
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 105/255 (41%), Gaps = 38/255 (14%)
Query: 98 IYHLAC-PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHP 155
++H+A P + Y PV+T TNV+GT+ +L + VG + ++ TS+ D
Sbjct: 84 VFHMAAQPLVRLSYS-EPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYD----- 137
Query: 156 QPETYWG--NVNPIGVRSCYDEGKRVAETLMFDY---------HRQHGIQIRIARIFNTY 204
E WG +G Y K AE + Y + QHG + R N
Sbjct: 138 NKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVI 197
Query: 205 GPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRL---------- 254
G D R+V + + + +P+ ++ P R + +V + + G + L
Sbjct: 198 GGGDWALD-RIVPDILRAFEQSQPVIIRNPHA-IRPWQHVLEPLSGYLLLAQKLYTDGAE 255
Query: 255 -MEGENTGPVNIGNPGEFTMLE-LAETVKELINPGIEIKMVENT-PDDPRQRKPDISKAK 311
EG N GP N + T ++ + E + + G ++ N P + K D SKAK
Sbjct: 256 YAEGWNFGP----NDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAK 311
Query: 312 ELLGWEPKVKLRDGL 326
LGW P+ L L
Sbjct: 312 MQLGWHPRWNLNTTL 326
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 136/332 (40%), Gaps = 46/332 (13%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL 91
ILVTG +G IG+ LV L E + ++A D +++ G +F I DV+
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIA-------SDIVQRDTGGIKF--ITLDVSNRD 52
Query: 92 LIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK--RVGARILLT 142
I+ +D I+HLA S K +P K N+ GT N+L AK RV ++++
Sbjct: 53 EIDRAVEKYSIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRV-EKVVIP 110
Query: 143 STSEVYGDPLIHPQPETYWGNVNPIGV---RSCYDEGKRVAETLMFDYHRQHGIQIRIAR 199
ST V+G PET V I + R+ + K AE L Y+ + G+ +R R
Sbjct: 111 STIGVFG-------PETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLR 163
Query: 200 ----IFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255
I P D V A++ E + Y+ D + L+ L
Sbjct: 164 YPGIISYKAEPTAGTTDYAV--EIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLY 221
Query: 256 EGENTGPV-----NIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKP---DI 307
E + V N+ FT EL +KE I P EI+ E+ D P D
Sbjct: 222 EADRDKLVLRNGYNV-TAYTFTPSELYSKIKERI-PEFEIEYKEDFRDKIAATWPESLDS 279
Query: 308 SKAKELLGWEPKVKLRDGLPLMEEDFRSRLGV 339
S+A G+ + L + M + +LG+
Sbjct: 280 SEASNEWGFSIEYDLDRTIDDMIDHISEKLGI 311
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 30/250 (12%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD------NLKKWIGHPRFELIRH 85
I+VTGGAGFIGS++V L + +++V DN G+K N+ ++ F LI+
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDF-LIQI 107
Query: 86 DVTEPLLIEVDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144
E +V+ I+H AC ++ +++ + N + +L L S+
Sbjct: 108 MAGEEFG-DVEAIFHEGACSSTT---EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASS 163
Query: 145 SEVYGDPLI-HPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ----HGIQIRIAR 199
+ YG + Y +N G ++ L +Y RQ QI R
Sbjct: 164 AATYGGRTSDFIESREYEKPLNVFG----------YSKFLFDEYVRQILPEANSQIVGFR 213
Query: 200 IFNTYGPRMNIDD--GRVVSNFIAQALRGE-PLTVQKPGTQTRSFCYVSDMVDGLIRLME 256
FN YGPR V + Q GE P + R F YV D+ D + +E
Sbjct: 214 YFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLE 273
Query: 257 GENTGPVNIG 266
+G N+G
Sbjct: 274 NGVSGIFNLG 283
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 99/250 (39%), Gaps = 30/250 (12%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD------NLKKWIGHPRFELIRH 85
I+VTGGAGFIGS++V L + +++V DN G+K N+ ++ F LI+
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDF-LIQI 60
Query: 86 DVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 145
E +V+ I+H +S +++ + N + +L L S++
Sbjct: 61 MAGEEFG-DVEAIFHEGAXSSTT--EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSA 117
Query: 146 EVYGDPLI-HPQPETYWGNVNPIGVRSCYDEGKRVAETLMFD-YHRQ----HGIQIRIAR 199
YG + Y +N G +FD Y RQ QI R
Sbjct: 118 ATYGGRTSDFIESREYEKPLNVYGYSK-----------FLFDEYVRQILPEANSQIVGFR 166
Query: 200 IFNTYGPRMNIDD--GRVVSNFIAQALRGE-PLTVQKPGTQTRSFCYVSDMVDGLIRLME 256
FN YGPR V + Q GE P + R F YV D+ D + +E
Sbjct: 167 YFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLE 226
Query: 257 GENTGPVNIG 266
+G N+G
Sbjct: 227 NGVSGIFNLG 236
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 110/293 (37%), Gaps = 66/293 (22%)
Query: 70 NLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNML 129
+L++WI DV +P D++Y+LA + P T G L +L
Sbjct: 97 SLRRWI----------DVIKP-----DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLL 141
Query: 130 GLAKR------VGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETL 183
+ + +SE++G P P++ P RS Y K A
Sbjct: 142 EAVRSHTIDSGRTVKYYQAGSSEMFGST---PPPQS---ETTPFHPRSPYAASKCAAHWY 195
Query: 184 MFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC- 242
+Y +G+ +FN PR NF+ + + L K G QT+ F
Sbjct: 196 TVNYREAYGLFACNGILFNHESPRRG-------ENFVTRKIT-RALGRIKVGLQTKLFLG 247
Query: 243 ---------YVSDMVDGLIRLMEGENTGPVNIGNPGEFTML-ELAETVKELINPG----- 287
+ D V+ + +++ E P ++ + E TV+E ++
Sbjct: 248 NLQASRDWGFAGDYVEAMWLMLQQEK--------PDDYVVATEEGHTVEEFLDVSFGYLG 299
Query: 288 ------IEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLM-EEDF 333
+EI P + + D SKAKE+LGW+P+V + +M +ED
Sbjct: 300 LNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDL 352
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 48/234 (20%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
M I++TG GF+G +L K +L H FE+ R E
Sbjct: 1 MNIVITGAKGFVGKNL----------------------KADLTSTTDHHIFEVHRQTKEE 38
Query: 90 PL---LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 146
L L++ D I HLA P K + + + + L++L + A ILL+S+ +
Sbjct: 39 ELESALLKADFIVHLAGVNRPEHDKEFSLGNV-SYLDHVLDILTRNTKKPA-ILLSSSIQ 96
Query: 147 VYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGP 206
D NP G E K E L+ +Y ++G + I R N +G
Sbjct: 97 ATQD--------------NPYG------ESKLQGEQLLREYAEEYGNTVYIYRWPNLFGK 136
Query: 207 RMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENT 260
+ V++ F + R E + V + + YV D+V + R +EG T
Sbjct: 137 WCKPNYNSVIATFCYKIARNEEIQVNDRNVEL-TLNYVDDIVAEIKRAIEGTPT 189
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 141/342 (41%), Gaps = 55/342 (16%)
Query: 27 QSNMR--ILVTGGAGFIGSHLVDKLMEN--EKNEVIVADNYF-TGSKDNLKKWIGHPR-- 79
Q +MR L+TG G GS+L + L+E E + ++ + F TG ++L K +P+
Sbjct: 20 QGHMRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYK---NPQAH 76
Query: 80 ----FELIRHDVTEP-LLIEV------DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM 128
+L D+T+ L+++ +IY+L + T + +GTL +
Sbjct: 77 IEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRL 136
Query: 129 LGLAKRVG----ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLM 184
L K G + STSE+YG PQ ET P RS Y K A ++
Sbjct: 137 LDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPRSPYGAAKLYAYWIV 191
Query: 185 FDYHRQHGIQIRIARIFNTYGPRMNIDD-GRVVSNFIAQALRGEPLTVQKPGT--QTRSF 241
++ + + +FN PR + R +S +A+ G+ L G R +
Sbjct: 192 VNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQ-LECFSLGNLDAKRDW 250
Query: 242 CYVSDMVDGLIRLMEGEN-------TGPVN-IGNPGEFTMLELAETV------------- 280
+ D V+ + +++ + TG V+ + E + L + +T+
Sbjct: 251 GHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRC 310
Query: 281 KELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKL 322
KE + + + P + + D +KAK+ L W+P+V
Sbjct: 311 KETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAF 352
>pdb|3SC6|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|D Chain D, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|E Chain E, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|F Chain F, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
Length = 287
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 25/193 (12%)
Query: 121 NVIGTLNMLGLAKRVGARILLTSTSEVY-GDPLIHPQPETY--WGNVNPIGVRSCYDEGK 177
N IG N+ ++ VGA+++ ST V+ GD +PE Y + N PI + Y K
Sbjct: 83 NAIGARNVAVASQLVGAKLVYISTDYVFQGD-----RPEGYDEFHNPAPINI---YGASK 134
Query: 178 RVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALR--GEPLTVQKPG 235
E + + H ++ I +R + ++ YG +NF+ +R E +
Sbjct: 135 YAGEQFVKELHNKYFI-VRTSWLYGKYG-----------NNFVKTMIRLGKEREEISVVA 182
Query: 236 TQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVEN 295
Q S YV+D+ + +L+ G ++ N G + E A+ + N + + V
Sbjct: 183 DQIGSPTYVADLNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVST 242
Query: 296 TPDDPRQRKPDIS 308
+P S
Sbjct: 243 EEFGAAAARPKYS 255
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 15/134 (11%)
Query: 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW-----IGHPRFELI 83
N IL+TGG G G V K+++ + I+ S+D LK+ PR
Sbjct: 21 NQTILITGGTGSFGKCFVRKVLDTTNAKKIIV-----YSRDELKQSEMAMEFNDPRMRFF 75
Query: 84 RHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138
DV + L VD H A +YNP++ IKTN++G N++ +
Sbjct: 76 IGDVRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAIS 135
Query: 139 ILLTSTSEVYGDPL 152
++ +++ +P+
Sbjct: 136 QVIALSTDKAANPI 149
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 91/232 (39%), Gaps = 48/232 (20%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL 91
I++TG GF+G +L K +L H FE+ R E L
Sbjct: 3 IVITGAKGFVGKNL----------------------KADLTSTTDHHIFEVHRQTKEEEL 40
Query: 92 ---LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148
L++ D I HLA P K + + + + L++L + A ILL+S+ +
Sbjct: 41 ESALLKADFIVHLAGVNRPEHDKEFSLGNV-SYLDHVLDILTRNTKKPA-ILLSSSIQAT 98
Query: 149 GDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRM 208
D NP G E K E L+ +Y ++G + I R N +G
Sbjct: 99 QD--------------NPYG------ESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWC 138
Query: 209 NIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENT 260
+ V++ F + R E + V + + YV D+V + R +EG T
Sbjct: 139 KPNYNSVIATFCYKIARNEEIQVNDRNVEL-TLNYVDDIVAEIKRAIEGTPT 189
>pdb|2HRZ|A Chain A, The Crystal Structure Of The Nucleoside-diphosphate-sugar
Epimerase From Agrobacterium Tumefaciens
Length = 342
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 48/228 (21%)
Query: 32 ILVTGGAGFIGSHLVDKLMEN--------EKNEVI-----VADNYFTGSKDNLKKWIGHP 78
I + G AG +G L +L+++ EK +I A F+G+ D + P
Sbjct: 17 IAIIGAAGXVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAP 76
Query: 79 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-- 136
+ + + D I+HLA S + + K + N+ GT + A R+
Sbjct: 77 ------GEAEKLVEARPDVIFHLAAIVSGE-AELDFDKGYRINLDGTRYLFD-AIRIANG 128
Query: 137 -----ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ- 190
R++ TS+ V+G PL +P P+ + + P+ + Y K + E L+ DY R+
Sbjct: 129 KDGYKPRVVFTSSIAVFGAPLPYPIPDEF--HTTPL---TSYGTQKAICELLLSDYSRRG 183
Query: 191 --HGIQIRIARIFNTYGPRMNIDDGR---VVSNFIAQALRGEPLTVQK 233
GI IR+ P + I G+ S F + LR EPL Q+
Sbjct: 184 FFDGIGIRL--------PTICIRPGKPNAAASGFFSNILR-EPLVGQE 222
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 126/333 (37%), Gaps = 70/333 (21%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY----------------FTGSKDNLKK 73
R++V GG G+ G L ++KN EV + DN D + +
Sbjct: 3 RVMVIGGDGYCG--WATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 60
Query: 74 W--IGHPRFELIRHDVTEPLLI-------EVDQIYHL----ACPASPIFYKYNPVKTIKT 120
W + EL D+ + + E D + H + P S I + V T
Sbjct: 61 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMI-DRSRAVYTQHN 119
Query: 121 NVIGTLNMLGLAKRVGARILLTSTSEV--YGDPLI-------------------HPQPET 159
NVIGTLN+L K G L + YG P I +P+ +
Sbjct: 120 NVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQAS 179
Query: 160 YWGNVNPIG-----VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-- 212
+ +++ + +C G R + + +G++ + R++ D
Sbjct: 180 SFYHLSKVHDSHNIAFTCKAWGIRATD---LNQGVVYGVKTDETEMHEELRNRLDYDAVF 236
Query: 213 GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL-IRLMEGENTGPVNIGN--PG 269
G ++ F QA G PLTV G QTR + + D V + I + G + N
Sbjct: 237 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTE 296
Query: 270 EFTMLELAETV-KELINPGIEIKMVENTPDDPR 301
+F++ ELA V K G+++K + T +PR
Sbjct: 297 QFSVNELASLVTKAGSKLGLDVKKM--TVPNPR 327
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 126/333 (37%), Gaps = 70/333 (21%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY----------------FTGSKDNLKK 73
R++V GG G+ G L ++KN EV + DN D + +
Sbjct: 13 RVMVIGGDGYCG--WATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 70
Query: 74 W--IGHPRFELIRHDVTEPLLI-------EVDQIYHL----ACPASPIFYKYNPVKTIKT 120
W + EL D+ + + E D + H + P S I + V T
Sbjct: 71 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMI-DRSRAVYTQHN 129
Query: 121 NVIGTLNMLGLAKRVGARILLTSTSEV--YGDPLI-------------------HPQPET 159
NVIGTLN+L K G L + YG P I +P+ +
Sbjct: 130 NVIGTLNVLFAIKEFGEECHLVKLGAMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQAS 189
Query: 160 YWGNVNPIG-----VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-- 212
+ +++ + +C G R + + +G++ + R++ D
Sbjct: 190 SFYHLSKVHDSHNIAFTCKAWGIRATD---LNQGVVYGVKTDETEMHEELRNRLDYDAVF 246
Query: 213 GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL-IRLMEGENTGPVNIGN--PG 269
G ++ F QA G PLTV G QTR + + D V + I + G + N
Sbjct: 247 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTE 306
Query: 270 EFTMLELAETV-KELINPGIEIKMVENTPDDPR 301
+F++ ELA V K G+++K + T +PR
Sbjct: 307 QFSVNELASLVTKAGSKLGLDVKKM--TVPNPR 337
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 126/333 (37%), Gaps = 70/333 (21%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY----------------FTGSKDNLKK 73
R++V GG G+ G L ++KN EV + DN D + +
Sbjct: 13 RVMVIGGDGYCG--WATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 70
Query: 74 W--IGHPRFELIRHDVTEPLLI-------EVDQIYHL----ACPASPIFYKYNPVKTIKT 120
W + EL D+ + + E D + H + P S I + V T
Sbjct: 71 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMI-DRSRAVYTQHN 129
Query: 121 NVIGTLNMLGLAKRVGARILLTSTSEV--YGDPLI-------------------HPQPET 159
NVIGTLN+L K G L + YG P I +P+ +
Sbjct: 130 NVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQAS 189
Query: 160 YWGNVNPIG-----VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-- 212
+ +++ + +C G R + + +G++ + R++ D
Sbjct: 190 SFYHLSKVHDSHNIAFTCKAWGIRATD---LNQGVVYGVKTDETEMHEELRNRLDYDAVF 246
Query: 213 GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL-IRLMEGENTGPVNIGN--PG 269
G ++ F QA G PLTV G QTR + + D V + I + G + N
Sbjct: 247 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTE 306
Query: 270 EFTMLELAETV-KELINPGIEIKMVENTPDDPR 301
+F++ ELA V K G+++K + T +PR
Sbjct: 307 QFSVNELASLVTKAGSKLGLDVKKM--TVPNPR 337
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 129/337 (38%), Gaps = 39/337 (11%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHD 86
S R L+TG G G++L L+E + EV AD K +G ++I D
Sbjct: 2 SGKRALITGIRGQDGAYLAKLLLE-KGYEVYGADRRSGEFASWRLKELGIENDVKIIHMD 60
Query: 87 VTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV--GA 137
+ E I + D++Y+LA + P+ T + + IG L +L + V
Sbjct: 61 LLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDT 120
Query: 138 RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRI 197
+ STSE++G PQ E P RS Y K + +Y + +
Sbjct: 121 KFYQASTSEMFGKVQEIPQTEK-----TPFYPRSPYAVAKLFGHWITVNYREAYNMFACS 175
Query: 198 ARIFNTYGPRMNIDD-GRVVSNFIAQALRG-EPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255
+FN P I+ R ++ +A+ G + V R + Y + V+ + +M
Sbjct: 176 GILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMM 235
Query: 256 EGENTGPVNIGNPGEFTMLELAETVK-------ELINPGIEIK---------MVENTPDD 299
+ I T+ E E E + GI K +VE + +
Sbjct: 236 QQPEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEF 295
Query: 300 PRQRKPDI-----SKAKELLGWEPKVKLRDGLPLMEE 331
R + DI KA + LGW+P+ + + +M E
Sbjct: 296 FRPAEVDILVGNPEKAMKKLGWKPRTTFDELVEIMME 332
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 104/249 (41%), Gaps = 18/249 (7%)
Query: 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDPLIH 154
++Y+LA + PV T + +G ++L ++ R STSE++G
Sbjct: 89 EVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAE 148
Query: 155 PQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-G 213
Q E P RS Y K + +Y G+ +FN P I+
Sbjct: 149 RQDEN-----TPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVT 203
Query: 214 RVVSNFIAQALRGEPLTVQKPGTQT-RSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFT 272
R V++ +A+ G+ ++ R + + D V+ + +++ + + T
Sbjct: 204 RKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKADDYVVATGVTTT 263
Query: 273 MLELAETVKELINPGIEIK-MVENTPDDPRQRKPDI-----SKAKELLGWEPKVKLRDGL 326
+ ++ + E + G++ + ++ P R + D+ +KA+ +LGW+P+ L + +
Sbjct: 264 VRDMCQIAFEHV--GLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELI 321
Query: 327 PLM-EEDFR 334
+M E D R
Sbjct: 322 RMMVEADLR 330
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 19/182 (10%)
Query: 31 RILVTGGAGFIGSHLVDKLMEN--EKNEVIVADNYFTGSKDNLKKWIGHP-RFELIRHDV 87
R+ VTGG GF+GS ++ L+EN N I AD L G + D+
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADL 62
Query: 88 TEP--LLIEVDQIYHLACPASPIFYKYNPVKTIKTN-----VIGTLNMLGLAKRVGARIL 140
+ P ++ + ASPI + + + I T +G L +K V I
Sbjct: 63 SNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIY 122
Query: 141 LTSTSEV-YGDPLIHPQPETYWGNVN------PIGVRSCYDEGKRVAETLMFDYHRQHGI 193
+S S V + E+ W +V+ P G Y K +AE + ++ Q+GI
Sbjct: 123 TSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWN--YAVSKTLAEKAVLEFGEQNGI 180
Query: 194 QI 195
+
Sbjct: 181 DV 182
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 129/324 (39%), Gaps = 52/324 (16%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFE----LIRHDV 87
+ VTG +GFIGS LV +L+ E+ + A + +K + P+ E L + D+
Sbjct: 8 VCVTGASGFIGSWLVMRLL--ERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADL 65
Query: 88 TEPLLIE-----VDQIYHLACPASPIFYKYNPV-KTIKTNVIGTLNMLGLAKRVGA---- 137
+ + ++H+A P F +P + IK + G MLG+ K A
Sbjct: 66 ADEGSFDEAIKGCTGVFHVATPMD--FESKDPENEVIKPTIEG---MLGIMKSCAAAKTV 120
Query: 138 -RILLTSTSEVYGDPLIHPQP---ETYWGNVNPIGVRS----CYDEGKRVAETLMFDYHR 189
R++ TS++ + H P E+ W ++ + Y K +AE + Y +
Sbjct: 121 RRLVFTSSAGTV-NIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAK 179
Query: 190 QHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS--------- 240
++ I F T P + VV FI ++ +T P T +
Sbjct: 180 ENNID------FITIIPTL------VVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQ 227
Query: 241 FCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDP 300
F ++ D+ + I L E I + + +L+LA+ ++E P I D+
Sbjct: 228 FVHLDDLCNAHIYLFENPKAEGRYICSSHDCIILDLAKMLREKY-PEYNIPTEFKGVDEN 286
Query: 301 RQRKPDISKAKELLGWEPKVKLRD 324
+ SK LG+E K L D
Sbjct: 287 LKSVCFSSKKLTDLGFEFKYSLED 310
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 23/127 (18%)
Query: 34 VTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH-------PRFELIRHD 86
V GG GF+ S LV L++ A N DN KK + H ++ R D
Sbjct: 14 VVGGTGFVASLLVKLLLQKG-----YAVNTTVRDPDNQKK-VSHLLELQELGDLKIFRAD 67
Query: 87 VTEPLLIE-----VDQIYHLACPASPIFYKYNPVK-TIKTNVIGTLNMLGLAKRVGA--R 138
+T+ L E D ++H+A P F +P IK + G +N++ R + R
Sbjct: 68 LTDELSFEAPIAGCDFVFHVATPVH--FASEDPENDMIKPAIQGVVNVMKACTRAKSVKR 125
Query: 139 ILLTSTS 145
++LTS++
Sbjct: 126 VILTSSA 132
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 18/126 (14%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-DNL-KKW-IGHP-RFE------ 81
+LVTG GF+ SH+V++L+E+ V + SK NL K+W +P RFE
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYK---VRGTARSASKLANLQKRWDAKYPGRFETAVVED 70
Query: 82 LIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RI 139
+++ + ++ + H+A S KY+ V + + GTLN L A + R
Sbjct: 71 MLKQGAYDEVIKGAAGVAHIASVVS-FSNKYDEV--VTPAIGGTLNALRAAAATPSVKRF 127
Query: 140 LLTSTS 145
+LTS++
Sbjct: 128 VLTSST 133
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
R+LVTG AG +GS + L +EV ++D G+ + ++ + +L
Sbjct: 4 RLLVTGAAGGVGSAIRPHL-GTLAHEVRLSDIVDLGAAEAHEEIVA---CDLADAQAVHD 59
Query: 91 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG 149
L+ + D I HL + +N + ++ N+IG N+ A+ +G RI+ S++ G
Sbjct: 60 LVKDCDGIIHLG--GVSVERPWNDI--LQANIIGAYNLYEAARNLGKPRIVFASSNHTIG 115
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 18/126 (14%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-DNL-KKW-IGHP-RFEL----- 82
+LVTG GF+ SH+V++L+E+ V + SK NL K+W +P RFE
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYK---VRGTARSASKLANLQKRWDAKYPGRFETAVVED 70
Query: 83 -IRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RI 139
++ + ++ + H+A S KY+ V + + GTLN L A + R
Sbjct: 71 XLKQGAYDEVIKGAAGVAHIASVVS-FSNKYDEV--VTPAIGGTLNALRAAAATPSVKRF 127
Query: 140 LLTSTS 145
+LTS++
Sbjct: 128 VLTSST 133
>pdb|2YDX|A Chain A, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|B Chain B, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|C Chain C, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|D Chain D, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|E Chain E, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
Length = 315
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 21/127 (16%)
Query: 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIR---- 84
N R+LVTG G +G + + +N + V F ++ P+FE +
Sbjct: 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCG---FRRAR---------PKFEQVNLLDS 49
Query: 85 ---HDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL 141
H + V I H A P + P + NV + N+ A VGA ++
Sbjct: 50 NAVHHIIHDFQPHV--IVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIY 107
Query: 142 TSTSEVY 148
S+ V+
Sbjct: 108 ISSDYVF 114
>pdb|1TA3|B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With
Inhibitor (Xip)
Length = 303
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW 74
+ V G + G+ L++N +NE IVA + + +N KW
Sbjct: 8 LFVAAGKSYFGTCSDQALLQNSQNEAIVASQFGVITPENSMKW 50
>pdb|4E4Y|A Chain A, The Crystal Structure Of A Short Chain Dehydrogenase
Family Protein From Francisella Tularensis Subsp.
Tularensis Schu S4
Length = 244
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 33 LVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK 72
LVTGG+ IG +V+ L++N+ + VI D + S +NLK
Sbjct: 8 LVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAENLK 47
>pdb|3U5T|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|B Chain B, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|C Chain C, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|D Chain D, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
Length = 267
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 116 KTIKTNVIGTLNMLGLAK---RVGARILLTSTSEVYGDPLIHPQPETY 160
+ I N+ GT N L A RVG RI+ STS+V L+HP Y
Sbjct: 131 RVIAVNLKGTFNTLREAAQRLRVGGRIINXSTSQV---GLLHPSYGIY 175
>pdb|3UYC|A Chain A, Designed Protein Ke59 R8_27A
pdb|3UYC|B Chain B, Designed Protein Ke59 R8_27A
Length = 249
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 30/112 (26%)
Query: 57 VIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI--------EVDQIYHLACPASPI 108
++ + YF GS ++L+K I V+ P+L+ ++D Y+L +
Sbjct: 82 ILTEEKYFNGSYEDLRK---------IASSVSIPILMWDIIVKESQIDDAYNLGADTVGL 132
Query: 109 FYKYNPVKTIKT-------------NVIGTLNMLGLAKRVGARILLTSTSEV 147
K + +K+ VI N L +A R+GAR ++ S+ ++
Sbjct: 133 IVKILTERELKSLLEYARSYGMEPAIVINDENDLDIALRIGARFIIISSHDL 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,474,425
Number of Sequences: 62578
Number of extensions: 451886
Number of successful extensions: 1328
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1108
Number of HSP's gapped (non-prelim): 111
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)