Query 019277
Match_columns 343
No_of_seqs 286 out of 1899
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:09:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02742 protein tyrosine phos 100.0 2.1E-75 4.6E-80 543.9 30.9 262 55-332 26-300 (303)
2 PHA02740 protein tyrosine phos 100.0 1.7E-74 3.6E-79 534.6 30.0 255 55-332 25-292 (298)
3 PHA02747 protein tyrosine phos 100.0 6.5E-73 1.4E-77 528.9 29.6 262 55-331 25-302 (312)
4 PHA02746 protein tyrosine phos 100.0 1.6E-72 3.5E-77 528.2 31.9 265 55-332 25-318 (323)
5 PHA02738 hypothetical protein; 100.0 3.2E-72 7E-77 525.5 26.9 261 55-334 25-300 (320)
6 KOG0790 Protein tyrosine phosp 100.0 5.2E-73 1.1E-77 521.9 12.9 274 55-334 244-527 (600)
7 KOG0792 Protein tyrosine phosp 100.0 6.1E-70 1.3E-74 544.9 27.1 282 38-334 853-1136(1144)
8 KOG4228 Protein tyrosine phosp 100.0 4.7E-69 1E-73 544.3 20.2 271 40-328 526-797 (1087)
9 smart00194 PTPc Protein tyrosi 100.0 4.6E-67 9.9E-72 479.6 28.5 256 57-326 2-258 (258)
10 KOG0793 Protein tyrosine phosp 100.0 8.1E-65 1.7E-69 487.4 16.7 294 29-334 707-1001(1004)
11 KOG0791 Protein tyrosine phosp 100.0 9.8E-64 2.1E-68 454.8 21.9 270 45-330 86-356 (374)
12 cd00047 PTPc Protein tyrosine 100.0 1.1E-61 2.5E-66 436.9 26.5 229 88-326 1-231 (231)
13 COG5599 PTP2 Protein tyrosine 100.0 1.2E-61 2.7E-66 422.2 20.4 245 77-333 44-299 (302)
14 PF00102 Y_phosphatase: Protei 100.0 1.5E-59 3.3E-64 422.7 21.9 232 86-326 1-235 (235)
15 KOG4228 Protein tyrosine phosp 100.0 2.7E-57 5.8E-62 459.0 20.6 291 22-329 772-1086(1087)
16 PRK15375 pathogenicity island 100.0 8.8E-54 1.9E-58 406.9 28.1 257 42-329 261-531 (535)
17 KOG0789 Protein tyrosine phosp 100.0 1.9E-51 4.1E-56 400.7 26.7 264 56-331 100-370 (415)
18 smart00404 PTPc_motif Protein 99.9 2.7E-24 5.8E-29 168.9 11.2 101 225-326 2-105 (105)
19 smart00012 PTPc_DSPc Protein t 99.9 2.7E-24 5.8E-29 168.9 11.2 101 225-326 2-105 (105)
20 PTZ00242 protein tyrosine phos 99.7 3.6E-16 7.9E-21 133.2 11.6 134 134-324 17-155 (166)
21 PTZ00393 protein tyrosine phos 99.5 2.5E-13 5.3E-18 120.1 13.2 134 133-323 92-225 (241)
22 KOG1720 Protein tyrosine phosp 99.4 1.3E-12 2.8E-17 111.8 11.1 91 225-325 116-206 (225)
23 cd00127 DSPc Dual specificity 99.2 1.1E-10 2.4E-15 96.3 10.3 87 224-320 49-135 (139)
24 COG2453 CDC14 Predicted protei 99.1 9.6E-10 2.1E-14 95.1 10.2 88 232-326 79-166 (180)
25 smart00195 DSPc Dual specifici 99.0 3.8E-09 8.2E-14 87.2 12.2 88 225-320 45-132 (138)
26 KOG2836 Protein tyrosine phosp 98.8 4.7E-08 1E-12 78.0 11.3 129 133-320 17-149 (173)
27 PF00782 DSPc: Dual specificit 98.8 3.3E-08 7.1E-13 80.9 9.1 72 241-322 58-129 (133)
28 PRK12361 hypothetical protein; 98.3 2.8E-06 6E-11 86.1 9.7 82 234-322 151-232 (547)
29 PF03162 Y_phosphatase2: Tyros 98.1 6.6E-06 1.4E-10 70.0 6.8 73 224-306 58-130 (164)
30 PF05706 CDKN3: Cyclin-depende 98.1 4.7E-06 1E-10 70.0 4.8 126 115-280 23-154 (168)
31 KOG1719 Dual specificity phosp 98.0 8.1E-05 1.8E-09 61.2 10.2 93 237-341 88-180 (183)
32 PF14566 PTPlike_phytase: Inos 97.5 0.0002 4.2E-09 60.0 5.8 50 232-283 99-148 (149)
33 COG5350 Predicted protein tyro 97.3 0.0026 5.6E-08 52.4 9.3 82 227-315 61-143 (172)
34 KOG1718 Dual specificity phosp 97.1 0.0021 4.5E-08 53.9 7.3 80 224-313 57-141 (198)
35 KOG2283 Clathrin coat dissocia 96.9 0.00073 1.6E-08 65.9 3.8 85 231-322 78-169 (434)
36 TIGR01244 conserved hypothetic 96.8 0.011 2.4E-07 48.5 9.6 56 241-308 71-126 (135)
37 PF13350 Y_phosphatase3: Tyros 96.8 0.0023 4.9E-08 54.4 5.6 37 134-171 20-56 (164)
38 KOG1716 Dual specificity phosp 96.8 0.0053 1.2E-07 57.0 8.1 60 244-313 143-202 (285)
39 KOG1717 Dual specificity phosp 96.6 0.01 2.2E-07 53.3 8.1 67 249-325 241-307 (343)
40 PF04273 DUF442: Putative phos 95.6 0.025 5.4E-07 44.7 5.2 38 241-282 71-108 (110)
41 KOG1572 Predicted protein tyro 95.0 0.34 7.4E-06 43.1 10.7 59 242-310 133-191 (249)
42 COG2365 Protein tyrosine/serin 94.8 0.043 9.3E-07 49.9 4.9 39 243-283 122-160 (249)
43 PLN02727 NAD kinase 94.7 0.071 1.5E-06 56.1 6.7 40 241-282 325-364 (986)
44 KOG4471 Phosphatidylinositol 3 93.2 0.11 2.3E-06 51.8 4.3 31 253-283 368-398 (717)
45 PF06602 Myotub-related: Myotu 83.4 2.2 4.7E-05 41.0 5.3 24 260-283 232-255 (353)
46 KOG1089 Myotubularin-related p 76.1 3.4 7.3E-05 41.7 4.1 24 260-283 345-368 (573)
47 COG3453 Uncharacterized protei 75.5 5.4 0.00012 31.8 4.3 32 241-276 72-103 (130)
48 KOG2386 mRNA capping enzyme, g 74.4 3.3 7.2E-05 39.9 3.5 83 232-321 93-179 (393)
49 PLN02160 thiosulfate sulfurtra 50.8 26 0.00057 28.4 4.2 17 259-276 81-97 (136)
50 cd01518 RHOD_YceA Member of th 45.6 21 0.00046 26.9 2.8 18 259-277 61-78 (101)
51 PRK11493 sseA 3-mercaptopyruva 44.7 24 0.00051 32.5 3.4 49 227-277 201-249 (281)
52 PF02061 Lambda_CIII: Lambda P 43.1 33 0.00072 21.7 2.7 24 227-250 2-25 (45)
53 cd01523 RHOD_Lact_B Member of 41.0 25 0.00055 26.4 2.6 17 259-276 61-77 (100)
54 cd01533 4RHOD_Repeat_2 Member 38.1 58 0.0013 24.8 4.3 16 259-275 66-81 (109)
55 cd01448 TST_Repeat_1 Thiosulfa 37.0 82 0.0018 24.4 5.1 33 241-276 63-95 (122)
56 COG0607 PspE Rhodanese-related 35.5 37 0.00079 25.6 2.7 16 259-275 61-76 (110)
57 KOG0208 Cation transport ATPas 35.4 82 0.0018 34.2 5.9 65 260-324 852-925 (1140)
58 cd01519 RHOD_HSP67B2 Member of 32.5 69 0.0015 24.0 3.8 16 259-275 66-81 (106)
59 COG5495 Uncharacterized conser 32.4 44 0.00096 30.1 2.9 18 258-276 90-107 (289)
60 COG5016 Pyruvate/oxaloacetate 29.4 5.3E+02 0.011 25.4 9.7 89 241-331 183-279 (472)
61 PF10727 Rossmann-like: Rossma 29.1 86 0.0019 25.3 3.9 28 244-271 80-108 (127)
62 cd07937 DRE_TIM_PC_TC_5S Pyruv 29.0 1.9E+02 0.0042 26.4 6.8 85 241-327 176-268 (275)
63 TIGR00167 cbbA ketose-bisphosp 27.9 94 0.002 28.9 4.5 20 260-279 207-226 (288)
64 PF12637 TSCPD: TSCPD domain; 27.1 2.3E+02 0.0049 21.5 5.7 56 273-331 37-94 (95)
65 TIGR03865 PQQ_CXXCW PQQ-depend 27.0 1.1E+02 0.0025 25.5 4.5 18 259-276 116-133 (162)
66 PRK08610 fructose-bisphosphate 26.6 1.2E+02 0.0027 28.1 5.0 69 260-336 204-280 (286)
67 KOG1147 Glutamyl-tRNA syntheta 26.5 12 0.00026 37.5 -1.7 29 133-161 475-503 (712)
68 PF06165 Glyco_transf_36: Glyc 26.2 2E+02 0.0044 22.3 5.5 43 189-233 47-89 (110)
69 PF14532 Sigma54_activ_2: Sigm 26.1 67 0.0015 25.8 2.9 32 244-275 6-37 (138)
70 KOG1530 Rhodanese-related sulf 22.9 97 0.0021 25.2 3.1 28 247-275 76-104 (136)
71 cd01522 RHOD_1 Member of the R 22.8 1.4E+02 0.0029 23.3 4.0 17 259-276 64-80 (117)
72 cd01520 RHOD_YbbB Member of th 22.5 1.8E+02 0.0039 22.9 4.7 19 259-277 86-104 (128)
73 PF02302 PTS_IIB: PTS system, 22.5 1.2E+02 0.0025 22.2 3.4 15 262-276 2-16 (90)
74 cd01528 RHOD_2 Member of the R 21.9 1.7E+02 0.0038 21.7 4.3 17 259-276 58-74 (101)
75 cd01529 4RHOD_Repeats Member o 21.0 90 0.002 23.1 2.5 17 259-276 56-72 (96)
76 COG2897 SseA Rhodanese-related 20.8 1.7E+02 0.0037 27.2 4.7 23 260-282 235-257 (285)
77 cd01525 RHOD_Kc Member of the 20.5 1E+02 0.0022 23.0 2.8 18 260-278 66-83 (105)
78 TIGR02764 spore_ybaN_pdaB poly 20.1 2.1E+02 0.0045 24.3 4.9 35 260-296 152-187 (191)
79 cd05567 PTS_IIB_mannitol PTS_I 20.0 1E+02 0.0022 22.7 2.6 14 261-274 2-15 (87)
80 COG4064 MtrG Tetrahydromethano 20.0 2.9E+02 0.0064 19.7 4.6 35 27-61 8-42 (75)
No 1
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=2.1e-75 Score=543.88 Aligned_cols=262 Identities=30% Similarity=0.523 Sum_probs=231.8
Q ss_pred HHHHHHHHHhHhccCCCcccccccccccCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCceee
Q 019277 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQ 134 (343)
Q Consensus 55 ~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~N~~kNR~~~i~p~D~sRV~L~~~~~~~~~~~dYInAs~v~~~~~~~~~~ 134 (343)
..+.+||+.|..... ..+|..+..++|..||||.||+|||+|||+|+.. .+++||||||||+|+.. +++
T Consensus 26 ~~i~~E~~~i~~~~~-----~~~~~~~~~~~N~~KNRy~~i~~~D~tRV~L~~~----~~~~dYINAsyI~g~~~--~~~ 94 (303)
T PHA02742 26 EILKEEHEHIMQEIV-----AFSCNESLELKNMKKCRYPDAPCFDRNRVILKIE----DGGDDFINASYVDGHNA--KGR 94 (303)
T ss_pred HHHHHHHHHHhcCCC-----CCchhhccChhhhhcCCCCCCCCCCCCEEEeCCC----CCCCCcEEEeeecCCCC--CCe
Confidence 678899999965432 3678889999999999999999999999999843 34689999999999854 468
Q ss_pred EeeecCCCCCCHHHHHHHHHHcCCCeEEEecccccCccccccccCCCCCC-CceEecCceEEEEEEEeeeccEEEEEEEE
Q 019277 135 FIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAED-GPREFGNIGIVTKWIKTTETALVLRNLEV 213 (343)
Q Consensus 135 ~I~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~~~~E~~~~~~c~~YwP~~~-~~~~~g~~~V~~~~~~~~~~~~~~r~l~v 213 (343)
|||||||+++|++|||+||||++|.+|||||++.|+++ ++|.+|||.+. +...||.|+|++..+.. ..+++++.|.|
T Consensus 95 fIatQ~Pl~~T~~dFW~MVw~~~~~vIVmLt~~~E~g~-~kc~~YWp~~~~~~~~~g~~~V~~~~~~~-~~~~~~~~l~l 172 (303)
T PHA02742 95 FICTQAPLEETALDFWQAIFQDQVRVIVMITKIMEDGK-EACYPYWMPHERGKATHGEFKIKTKKIKS-FRNYAVTNLCL 172 (303)
T ss_pred EEEECCCCcccHHHHHHHHhhcCCCeEEEcchhhhCCe-eeccccCCCCCCCceEEEEEEEEEEEEEE-cCCEEEEEEEE
Confidence 99999999999999999999999999999999999998 99999999754 57889999999888765 57899999999
Q ss_pred eecCCCCCCeEEEEEecCccCCCCCCCChHHHHHHHHHHHcCC------------CCCCCEEEEcCCCCchhHHHHHHHH
Q 019277 214 NYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP------------PNFGPIVVHCSAGIGRTGAYCTIHN 281 (343)
Q Consensus 214 ~~~~~~~~~~~v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~------------~~~~PivVHCs~GvGRtGtf~ai~~ 281 (343)
++.+.+. .+.|+||||++|||+|+|.++..+++|+..+++.. ...+|||||||+|+||||||||+|+
T Consensus 173 ~~~~~~~-~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~ 251 (303)
T PHA02742 173 TDTNTGA-SLDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDI 251 (303)
T ss_pred EECCCCc-eEEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHH
Confidence 9866555 56999999999999999999999999998776421 1137999999999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHh
Q 019277 282 TVQRILVGDMSALDLANTVKVFRSQRIGMVQTMEQYIFCHQAIVDELEDLI 332 (343)
Q Consensus 282 ~~~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt~~QY~f~~~~l~~~l~~~~ 332 (343)
+++++..++ .+||+++|+.||+||++||||.+||.|||++|++|++.+-
T Consensus 252 ~i~~~~~~~--~v~v~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~y~~~~~ 300 (303)
T PHA02742 252 CISKYNERA--IIPLLSIVRDLRKQRHNCLSLPQQYIFCYFIVLIFAKLMA 300 (303)
T ss_pred HHHHHHhcC--CCCHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHhc
Confidence 999998765 7999999999999999999999999999999999998654
No 2
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=1.7e-74 Score=534.64 Aligned_cols=255 Identities=20% Similarity=0.360 Sum_probs=223.3
Q ss_pred HHHHHHHHHhHhccCCCcccccccccccCCCCCCCCC--CCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCce
Q 019277 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNR--YTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKV 132 (343)
Q Consensus 55 ~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~N~~kNR--~~~i~p~D~sRV~L~~~~~~~~~~~dYInAs~v~~~~~~~~ 132 (343)
..+.+||+.|..... ..++..+.+++|..||| |.|++|||||||+|+. ++||||||||+|+.. +
T Consensus 25 ~~i~~E~~~i~~~~~-----~~~~~~~~~~~n~~knr~r~~~i~~~D~sRV~L~~-------~~~YINAnyVdG~~~--~ 90 (298)
T PHA02740 25 SCIIKEYRAIVPEHE-----DEANKACAQAENKAKDENLALHITRLLHRRIKLFN-------DEKVLDARFVDGYDF--E 90 (298)
T ss_pred HHHHHHHHHHhccCc-----cchhhhhhchhhhcccccccCCcCCccCceEEecC-------CCCcEEEEEecCCCC--C
Confidence 689999999975431 35677888899999996 5899999999999972 358999999999854 4
Q ss_pred eeEeeecCCCCCCHHHHHHHHHHcCCCeEEEecccccCccccccc-cCCCCCCC-ceEecCceEEEEEEEeeeccEEEEE
Q 019277 133 SQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCG-DYFQAEDG-PREFGNIGIVTKWIKTTETALVLRN 210 (343)
Q Consensus 133 ~~~I~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~~~~E~~~~~~c~-~YwP~~~~-~~~~g~~~V~~~~~~~~~~~~~~r~ 210 (343)
++|||||+|+++|++|||+||||++|.+|||||+..| .+|. +|||.+.+ ...+|+|.|++.++.. ..++++|.
T Consensus 91 ~~fIaTQ~Pl~~T~~dFW~MVwe~~~~iIVMLt~~~e----~kc~~~YWP~~~~~~~~~g~f~V~~~~~~~-~~~~~~~~ 165 (298)
T PHA02740 91 QKFICIINLCEDACDKFLQALSDNKVQIIVLISRHAD----KKCFNQFWSLKEGCVITSDKFQIETLEIII-KPHFNLTL 165 (298)
T ss_pred CcEEEecCCchhhHHHHHHHHHhcCCCEEEEcccccc----ccccccCCCCCCCCeEEECCEEEEEEEEEe-cCCEEEEE
Confidence 6899999999999999999999999999999999887 5798 99998766 5789999999887664 57899999
Q ss_pred EEEeecCCCCCCeEEEEEecCccCCCCCCCChHHHHHHHHHHHcC---------CCCCCCEEEEcCCCCchhHHHHHHHH
Q 019277 211 LEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL---------PPNFGPIVVHCSAGIGRTGAYCTIHN 281 (343)
Q Consensus 211 l~v~~~~~~~~~~~v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~---------~~~~~PivVHCs~GvGRtGtf~ai~~ 281 (343)
|.|++.. +. .|.|.||||++|||+|+|.++..+++|+..+++. ....+|||||||+|+||||||||+|+
T Consensus 166 l~l~~~~-~~-~r~V~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi 243 (298)
T PHA02740 166 LSLTDKF-GQ-AQKISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDI 243 (298)
T ss_pred EEEEcCC-CC-cEEEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHH
Confidence 9998743 33 5699999999999999999999999998766531 22348999999999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHh
Q 019277 282 TVQRILVGDMSALDLANTVKVFRSQRIGMVQTMEQYIFCHQAIVDELEDLI 332 (343)
Q Consensus 282 ~~~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt~~QY~f~~~~l~~~l~~~~ 332 (343)
+++++..++ .+||+++|+.||+||++||||.+||.|||++|++|++..+
T Consensus 244 ~l~~~~~~~--~vdi~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~yl~~~~ 292 (298)
T PHA02740 244 CATEFDKTG--MLSIANALKKVRQKKYGCMNCLDDYVFCYHLIAAYLKEKF 292 (298)
T ss_pred HHHHHHhcC--cccHHHHHHHHHhhCccccCCHHHHHHHHHHHHHHHHHhh
Confidence 999998765 8999999999999999999999999999999999998764
No 3
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=6.5e-73 Score=528.89 Aligned_cols=262 Identities=30% Similarity=0.459 Sum_probs=227.0
Q ss_pred HHHHHHHHHhHhccCCCcccccccccccCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCceee
Q 019277 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQ 134 (343)
Q Consensus 55 ~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~N~~kNR~~~i~p~D~sRV~L~~~~~~~~~~~dYInAs~v~~~~~~~~~~ 134 (343)
..+.+||+.|..... ..++..+..++|..||||.||+|||++||+|.... ++.+||||||||+|+.. +++
T Consensus 25 ~~i~~E~~~i~~~~~-----~~~~~~~~~~~N~~kNRy~di~p~D~sRV~L~~~~---~~~~dYINAsyV~g~~~--~~~ 94 (312)
T PHA02747 25 GIIRDEHHQIILKPF-----DGLIANFEKPENQPKNRYWDIPCWDHNRVILDSGG---GSTSDYIHANWIDGFED--DKK 94 (312)
T ss_pred HHHHHHHHHHhcCCC-----CChhhhhhCchhhccCCCCCCCCCCCCEeEecCCC---CCCCCcEEeeeecCCCC--CCe
Confidence 568899999864321 24567788999999999999999999999998532 24689999999999854 469
Q ss_pred EeeecCCCCCCHHHHHHHHHHcCCCeEEEecccc-cCccccccccCCCCCC-CceEecCceEEEEEEEeeeccEEEEEEE
Q 019277 135 FIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLV-DNYKMVKCGDYFQAED-GPREFGNIGIVTKWIKTTETALVLRNLE 212 (343)
Q Consensus 135 ~I~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~~~~-E~~~~~~c~~YwP~~~-~~~~~g~~~V~~~~~~~~~~~~~~r~l~ 212 (343)
|||||+|+++|++|||+||||++|.+|||||++. |+++ ++|.+|||.+. +...+|+|.|++.+... ..++++|.|.
T Consensus 95 yIaTQ~Pl~~T~~dFW~MVwe~~~~~IVMLt~~~~e~g~-~kc~~YWp~~~~~~~~~g~~~V~~~~~~~-~~~~~~~~l~ 172 (312)
T PHA02747 95 FIATQGPFAETCADFWKAVWQEHCSIIVMLTPTKGTNGE-EKCYQYWCLNEDGNIDMEDFRIETLKTSV-RAKYILTLIE 172 (312)
T ss_pred EEEeCCCcchhHHHHHHHHHhccCCEEEEcccccccCCc-ccccccCCCCCCCCeEeeeEEEEEEEEEe-cCCeEEEEEE
Confidence 9999999999999999999999999999999999 7888 99999999754 57889999999887665 5789999999
Q ss_pred EeecCCCCCCeEEEEEecCccCCCCCCCChHHHHHHHHHHHcCC-----------CCCCCEEEEcCCCCchhHHHHHHHH
Q 019277 213 VNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP-----------PNFGPIVVHCSAGIGRTGAYCTIHN 281 (343)
Q Consensus 213 v~~~~~~~~~~~v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~-----------~~~~PivVHCs~GvGRtGtf~ai~~ 281 (343)
|+....+. .|.|+||||++|||+|+|.+...+++|+..++..+ ...+|||||||+|+||||||||+|+
T Consensus 173 l~~~~~~~-~r~V~h~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi 251 (312)
T PHA02747 173 ITDKILKD-SRKISHFQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDI 251 (312)
T ss_pred EEECCCCC-ceEEEEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHH
Confidence 99865554 56999999999999999999988888876553211 1137999999999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHhcccCCCCHHHHHHH---HHHHHHHHHHH
Q 019277 282 TVQRILVGDMSALDLANTVKVFRSQRIGMVQTMEQYIFC---HQAIVDELEDL 331 (343)
Q Consensus 282 ~~~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt~~QY~f~---~~~l~~~l~~~ 331 (343)
+++++..++ .+||+++|+.||+||++||||.+||.|| |++|.+|+..+
T Consensus 252 ~i~~l~~~~--~v~v~~~V~~lR~qR~~~Vqt~~QY~F~~~~Y~~l~~~~~~~ 302 (312)
T PHA02747 252 CLNQLVKRK--AICLAKTAEKIREQRHAGIMNFDDYLFIQPGYEVLHYFLSKI 302 (312)
T ss_pred HHHHHHhcC--CCCHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999998765 7999999999999999999999999999 99999988765
No 4
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=1.6e-72 Score=528.20 Aligned_cols=265 Identities=31% Similarity=0.499 Sum_probs=228.5
Q ss_pred HHHHHHHHHhHhccCCCcccccccccccCCCCCCCCCCCCCCCCCCCeEEeecCCC-----------------CCCCCCC
Q 019277 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKD-----------------YRPAARG 117 (343)
Q Consensus 55 ~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~N~~kNR~~~i~p~D~sRV~L~~~~~-----------------~~~~~~d 117 (343)
..+.+||..|..... ..++..+..++|..||||.||+|||+|||+|+.... ...+++|
T Consensus 25 ~~~~~e~~~i~~~~~-----~~t~~~~~~~~N~~KNRy~di~p~D~sRV~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 99 (323)
T PHA02746 25 EFVLLEHAEVMDIPI-----RGTTNHFLKKENLKKNRFHDIPCWDHSRVVINAHESLKMFDVGDSDGKKIEVTSEDNAEN 99 (323)
T ss_pred HHHHHHHHHHhcCCC-----CcchhhccChhhccccCCCCCCCCcCCEEEecCCCCccccccccccccccccccCCCCCC
Confidence 578899999986542 357788889999999999999999999999985321 0234589
Q ss_pred cccceeeecCCCCceeeEeeecCCCCCCHHHHHHHHHHcCCCeEEEecccccCccccccccCCCCCCC-ceEecCceEEE
Q 019277 118 YINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDG-PREFGNIGIVT 196 (343)
Q Consensus 118 YInAs~v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~~~~E~~~~~~c~~YwP~~~~-~~~~g~~~V~~ 196 (343)
|||||||+|+.. +++|||||+|+++|++|||+||||++|.+|||||...| ++ .+|.+|||.+.+ ...||+|.|++
T Consensus 100 YINAsyV~g~~~--~~~fIaTQ~Pl~~T~~dFW~MIwe~~v~vIVMLt~~~e-~~-~kc~~YWP~~~~~~~~~g~~~V~~ 175 (323)
T PHA02746 100 YIHANFVDGFKE--ANKFICAQGPKEDTSEDFFKLISEHESQVIVSLTDIDD-DD-EKCFELWTKEEDSELAFGRFVAKI 175 (323)
T ss_pred eEEEecccCCCC--CCeEEEeCCCChhhHHHHHHHHHhhCCCEEEEeccccc-CC-ccCCCCCCCCCCCCeEEcCEEEEE
Confidence 999999999854 46899999999999999999999999999999999865 45 799999998766 67899999998
Q ss_pred EEEEeeeccEEEEEEEEeecCCCCCCeEEEEEecCccCCCCCCCChHHHHHHHHHHHcCC-----------CCCCCEEEE
Q 019277 197 KWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP-----------PNFGPIVVH 265 (343)
Q Consensus 197 ~~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~-----------~~~~PivVH 265 (343)
..... ..+++.+.|.|+....+. .|.|+||||++|||+|+|.+...+++|+..+++.. ...+|||||
T Consensus 176 ~~~~~-~~~~~~~~l~l~~~~~~~-~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVH 253 (323)
T PHA02746 176 LDIIE-ELSFTKTRLMITDKISDT-SREIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVH 253 (323)
T ss_pred EEEEE-cCCeEEEEEEEEECCCCC-ceEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEE
Confidence 87654 567899999998765554 46999999999999999999999999988775321 123899999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHh
Q 019277 266 CSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMEQYIFCHQAIVDELEDLI 332 (343)
Q Consensus 266 Cs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt~~QY~f~~~~l~~~l~~~~ 332 (343)
||+|+||||||||+|++++++..++ .+||+++|+.||+||++||||.+||.|||++|.++|....
T Consensus 254 CsaGvGRTGtfcaid~~l~~l~~~~--~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~~l~~~~ 318 (323)
T PHA02746 254 CSAGIGRAGTFCAIDNALEQLEKEK--EVCLGEIVLKIRKQRHSSVFLPEQYAFCYKALKYAIIEEA 318 (323)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhcC--CCCHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998765 7999999999999999999999999999999999985543
No 5
>PHA02738 hypothetical protein; Provisional
Probab=100.00 E-value=3.2e-72 Score=525.54 Aligned_cols=261 Identities=28% Similarity=0.458 Sum_probs=225.0
Q ss_pred HHHHHHHHHhHhccCCCcccccccccccCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCceee
Q 019277 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQ 134 (343)
Q Consensus 55 ~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~N~~kNR~~~i~p~D~sRV~L~~~~~~~~~~~dYInAs~v~~~~~~~~~~ 134 (343)
..+.+||+.|..... ..++..+. .|..||||.||+|||++||+|+.. .+.+||||||||+|+.. +++
T Consensus 25 ~~i~~E~~~i~~~~~-----~~t~~~~~--~N~~kNR~~~v~~~d~sRV~L~~~----~~~~dYINAsyVdg~~~--~~k 91 (320)
T PHA02738 25 EVITREHQKVISEKV-----DGTFNAEK--KNRKLNRYLDAVCFDHSRVILPAE----RNRGDYINANYVDGFEY--KKK 91 (320)
T ss_pred HHHHHHHHHHhcCCC-----CcchhHHH--HhhhhCCCCCcCCCcCCEEEeCCC----CCCCCceEeEEecCCCC--Cce
Confidence 578899999864332 13444443 399999999999999999999742 34689999999999864 459
Q ss_pred EeeecCCCCCCHHHHHHHHHHcCCCeEEEecccccCccccccccCCCCCCC-ceEecCceEEEEEEEeeeccEEEEEEEE
Q 019277 135 FIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDG-PREFGNIGIVTKWIKTTETALVLRNLEV 213 (343)
Q Consensus 135 ~I~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~~~~E~~~~~~c~~YwP~~~~-~~~~g~~~V~~~~~~~~~~~~~~r~l~v 213 (343)
|||||+|+++|++|||+||||++|.+|||||+..|+++ ++|.+|||.+.+ ...+|+|+|++..+.. ..+++.|.|.|
T Consensus 92 fI~TQ~Pl~~T~~dFW~MVwe~~v~~IVmL~~~~E~~~-~kc~~YWp~~~~~~~~~g~f~V~~~~~~~-~~~~~~~~l~l 169 (320)
T PHA02738 92 FICGQAPTRQTCYDFYRMLWMEHVQIIVMLCKKKENGR-EKCFPYWSDVEQGSIRFGKFKITTTQVET-HPHYVKSTLLL 169 (320)
T ss_pred eEEecCCChHHHHHHHHHHHHhCCcEEEEeeehhhCCe-eeccccCCCCCCCceEeccEEEEEEEEEe-cCCeEEEEEEE
Confidence 99999999999999999999999999999999999988 999999998654 7889999999988765 57899999999
Q ss_pred eecCCCCCCeEEEEEecCccCCCCCCCChHHHHHHHHHHHcCC--------------CCCCCEEEEcCCCCchhHHHHHH
Q 019277 214 NYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP--------------PNFGPIVVHCSAGIGRTGAYCTI 279 (343)
Q Consensus 214 ~~~~~~~~~~~v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~--------------~~~~PivVHCs~GvGRtGtf~ai 279 (343)
++.. + ..+.|+||||++|||+|+|.++..+++++..+++.. ...+|||||||+|+||||||||+
T Consensus 170 ~~~~-~-~~r~V~h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcai 247 (320)
T PHA02738 170 TDGT-S-ATQTVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVV 247 (320)
T ss_pred EeCC-C-CcEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHH
Confidence 8743 3 356999999999999999999999999988775321 11379999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHhcc
Q 019277 280 HNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMEQYIFCHQAIVDELEDLISG 334 (343)
Q Consensus 280 ~~~~~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt~~QY~f~~~~l~~~l~~~~~~ 334 (343)
|++++++..++ .+||+++|+.||+||++||+|.+||.|||++|++|+......
T Consensus 248 di~i~~~~~~~--~vdv~~~V~~lR~qR~~~vqt~~QY~F~y~~l~~y~~~~~~~ 300 (320)
T PHA02738 248 DISISRFDACA--TVSIPSIVSSIRNQRYYSLFIPFQYFFCYRAVKRYVNLTVNK 300 (320)
T ss_pred HHHHHHHHhcC--CcCHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCch
Confidence 99999998765 799999999999999999999999999999999998765543
No 6
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-73 Score=521.86 Aligned_cols=274 Identities=36% Similarity=0.544 Sum_probs=240.1
Q ss_pred HHHHHHHHHhHhccCCCcccccccccccCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCC-----
Q 019277 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSS----- 129 (343)
Q Consensus 55 ~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~N~~kNR~~~i~p~D~sRV~L~~~~~~~~~~~dYInAs~v~~~~~----- 129 (343)
.+|++||+.|+..... ..-+-..+..++|+.||||.||+|||||||+|...+ ....++||||||||..-..
T Consensus 244 ~GfwEEFesLqq~~~~---~~~sr~EG~r~eN~~KNRYkNIlPfDHtRViL~d~~-~n~pgsdYINAnyi~~~~q~~~~~ 319 (600)
T KOG0790|consen 244 AGFWEEFESLQQQEVK---NLHSRLEGQRPENKGKNRYKNILPFDHTRVILQDRD-PNIPGSDYINANYIMIEFQRLCNN 319 (600)
T ss_pred cchhHHHHHhhhhhhH---hhhhhhccccchhhccccccccCcccceeeEeecCC-CCCccchhcccchhhhhhhhccCc
Confidence 6899999999865432 233556788899999999999999999999998654 3467899999999854221
Q ss_pred -CceeeEeeecCCCCCCHHHHHHHHHHcCCCeEEEecccccCccccccccCCCCCCCceEecCceEEEEEEEeeeccEEE
Q 019277 130 -EKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVL 208 (343)
Q Consensus 130 -~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~~~~E~~~~~~c~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~ 208 (343)
.-.+.||||||-|.+|+.|||+||||+|+++|||-|...|.|+ .||.+|||.+.....||.+.|++..+.. ..+|++
T Consensus 320 ~~~kKsyIAtQGCL~nTVnDFW~MvwQENsrVIVMtTkE~ERgK-~KC~~YWPee~~~e~~G~~~v~~v~E~~-t~dY~L 397 (600)
T KOG0790|consen 320 SKPKKSYIATQGCLQNTVNDFWRMVWQENSRVIVMTTKEVERGK-SKCVKYWPEEGALEEYGVMRVRNVKESD-THDYTL 397 (600)
T ss_pred cccccceeehhhHHHHHHHHHHHHHHhccceEEEEehhhhhccc-ccccccCCcccchhhcCceEEEeccccc-ccccee
Confidence 1124899999999999999999999999999999999999999 9999999977668899999999998776 478999
Q ss_pred EEEEEeecCCCCCCeEEEEEecCccCCCCCCCChHHHHHHHHHHHcCCCC---CCCEEEEcCCCCchhHHHHHHHHHHHH
Q 019277 209 RNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPN---FGPIVVHCSAGIGRTGAYCTIHNTVQR 285 (343)
Q Consensus 209 r~l~v~~~~~~~~~~~v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~~~---~~PivVHCs~GvGRtGtf~ai~~~~~~ 285 (343)
|+|.+.....++..|.|+||||..|||||+|.++..++.|+..+++...+ -||||||||||+||||||++||+++++
T Consensus 398 R~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~ 477 (600)
T KOG0790|consen 398 RELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQ 477 (600)
T ss_pred hheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHH
Confidence 99999977777777899999999999999999999999999998765442 389999999999999999999999999
Q ss_pred HHcCCCC-CCCHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHhcc
Q 019277 286 ILVGDMS-ALDLANTVKVFRSQRIGMVQTMEQYIFCHQAIVDELEDLISG 334 (343)
Q Consensus 286 l~~~~~~-~vdv~~~v~~lR~qR~~~Vqt~~QY~f~~~~l~~~l~~~~~~ 334 (343)
+...+.. .+||..+|+.+|.||.|||||..||.|+|.||.+||+.+...
T Consensus 478 I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFiY~Avqhyietl~~r 527 (600)
T KOG0790|consen 478 IREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYVAVQHYIETLQKR 527 (600)
T ss_pred HHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHHHHHHHHHHHHHHHH
Confidence 9875432 689999999999999999999999999999999999988654
No 7
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-70 Score=544.90 Aligned_cols=282 Identities=34% Similarity=0.588 Sum_probs=254.0
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHhHhccCCCcccccccccccCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCC
Q 019277 38 HCSEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARG 117 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~N~~kNR~~~i~p~D~sRV~L~~~~~~~~~~~d 117 (343)
...+.+..|.+.+.+ .++..||+.|...+ + ...|++|.+++|..||||+||+|||.|||.|.+..+ .+.+
T Consensus 853 ~~dks~~~L~~~L~~--g~v~~efE~i~rkk--p---~~~~~~a~lpeN~~KNRyrdvlPYD~tRV~L~~~~~---~nag 922 (1144)
T KOG0792|consen 853 SLDKSCIILAQGLED--GMVFTEFEQIYRKK--P---GMACSIARLPENAPKNRYRDVLPYDDTRVELQPSKD---NNAG 922 (1144)
T ss_pred chhhHHHHHHhhhhc--CchHHHHHHHhhhC--C---CceeeeccccccccccccCCcCCCcCceeeeccCCC---CCcc
Confidence 344556777777776 47889999997654 2 357899999999999999999999999999997754 4779
Q ss_pred cccceeeecCCCCceeeEeeecCCCCCCHHHHHHHHHHcCCCeEEEecccccCccccccccCCCCC-CCceEecCceEEE
Q 019277 118 YINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAE-DGPREFGNIGIVT 196 (343)
Q Consensus 118 YInAs~v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~~~~E~~~~~~c~~YwP~~-~~~~~~g~~~V~~ 196 (343)
|||||+|..+.++....|||||||++.|+.|||+||||+++.+|||||..+|+|+ .||++|||.. .+.+.||.|.|++
T Consensus 923 YINAS~i~ipvgg~e~~YIA~QGPLp~T~~DFWQMVWEQ~~~lIvMlT~e~EggR-~KchqYWPr~~~~t~~ygrf~v~~ 1001 (1144)
T KOG0792|consen 923 YINASHIEIPVGGIENRYIACQGPLPHTCTDFWQMVWEQGSTLIVMLTTEVEGGR-VKCHQYWPRLGHETMEYGRFQVTC 1001 (1144)
T ss_pred cccceeeEeeecceeEEEEEecCCCcchHHHHHHHHHhcCceEEEEEeehhhcCe-eccccccCCCCccceeccceEEEE
Confidence 9999999998777778999999999999999999999999999999999999999 9999999977 5589999999999
Q ss_pred EEEEeeeccEEEEEEEEeecCCCCCCeEEEEEecCccCCCCCCCChHHHHHHHHHHHcCCCC-CCCEEEEcCCCCchhHH
Q 019277 197 KWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPN-FGPIVVHCSAGIGRTGA 275 (343)
Q Consensus 197 ~~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~~~-~~PivVHCs~GvGRtGt 275 (343)
...+. ...|+.|.|++.+..+++.+ +|+|+||++|||||+|+++..|++|+.+++..+.. ..|||||||||+|||||
T Consensus 1002 ~~~~~-t~~y~tr~m~l~~~~t~eeR-~V~hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGV 1079 (1144)
T KOG0792|consen 1002 VFEQQ-TTCYVTREMTLKDLQTREER-TVWHLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGV 1079 (1144)
T ss_pred EEecc-cccEEEEeEEEeeccCCcee-eeeeeeecccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCccee
Confidence 98765 58899999999999887754 99999999999999999999999999999887766 46999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHhcc
Q 019277 276 YCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMEQYIFCHQAIVDELEDLISG 334 (343)
Q Consensus 276 f~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt~~QY~f~~~~l~~~l~~~~~~ 334 (343)
+|.++.++..+.... .+|+.++|+.||.||.+||||+.||.|||++|+.+|+.....
T Consensus 1080 lIl~e~~l~lle~Ne--~vdi~divr~mR~QR~~mVQT~~QYkFVyevil~~l~~~~l~ 1136 (1144)
T KOG0792|consen 1080 LILMETALCLLEHNE--PVDILDIVRTMRDQRAMMVQTLSQYKFVYEVILRVLKRGRLI 1136 (1144)
T ss_pred hHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhhhccchHHhhHHHHHHHHHHHhcccc
Confidence 999999999888765 799999999999999999999999999999999999876544
No 8
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-69 Score=544.33 Aligned_cols=271 Identities=33% Similarity=0.588 Sum_probs=242.8
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHhHhccCCCcccccccccccCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcc
Q 019277 40 SEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYI 119 (343)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~N~~kNR~~~i~p~D~sRV~L~~~~~~~~~~~dYI 119 (343)
.++++.++.+..+...+|.+||+.|... ..++..+.+.+|+.||||.||++||++||+|...+ +..++|||
T Consensus 526 ~dl~~~i~~~~~~~~~~F~~Eyesl~~~-------~~~~~~s~~~en~~KNRY~nilayD~sRV~L~~i~--Gd~~sDYI 596 (1087)
T KOG4228|consen 526 ADLLEHIERRKADDGYGFKQEYESLPEG-------QFTWEHSNKKENKQKNRYENILAYDHSRVILPPIE--GDPNSDYI 596 (1087)
T ss_pred HHHHHHHHHhhcccccchHHHHhhcccc-------CCccccCccccccccccCCcchhhhcceeeecccC--CCccccce
Confidence 3445556655555558999999998754 24577788999999999999999999999999774 45789999
Q ss_pred cceeeecCCCCceeeEeeecCCCCCCHHHHHHHHHHcCCCeEEEecccccCccccccccCCCCCCCceEecCceEEEEEE
Q 019277 120 NASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWI 199 (343)
Q Consensus 120 nAs~v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~~~~E~~~~~~c~~YwP~~~~~~~~g~~~V~~~~~ 199 (343)
|||||+||. ++++|||||||+++|+.||||||||+++.+|||++.+.|.++ .||.+||| .++..||++.|++...
T Consensus 597 NAnyIdGy~--e~n~yIaaQgP~~eTv~DFWRMVWEq~S~~IVMvTnl~E~~r-~kC~qYWP--~~t~~yGdi~V~~~~~ 671 (1087)
T KOG4228|consen 597 NANYIDGYK--EPNAYIAAQGPRPETVGDFWRMVWEQKSAGIVMVTNLEEFSR-VKCAQYWP--EGTETYGDIKVTLVQT 671 (1087)
T ss_pred eeeeeeccc--ccccceeccCCcccchHHHHHHheeccCCcEEEEeccccccc-ccccccCC--CCccccccccccceee
Confidence 999999985 457999999999999999999999999999999999999999 99999999 6788999999999887
Q ss_pred EeeeccEEEEEEEEeecCCCCCCeEEEEEecCccCCCCCCCChHHHHHHHHHHHcCCCC-CCCEEEEcCCCCchhHHHHH
Q 019277 200 KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPN-FGPIVVHCSAGIGRTGAYCT 278 (343)
Q Consensus 200 ~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~~~-~~PivVHCs~GvGRtGtf~a 278 (343)
.. ..+|.+|.|.|...+... .|.|+||||++|||+|+|..+..++.|+++++...+- .||||||||||+||||+|++
T Consensus 672 ~~-~a~y~iRtf~l~~~g~~~-~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~ 749 (1087)
T KOG4228|consen 672 KP-LAEYGIRTFALKKQGENP-KREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIV 749 (1087)
T ss_pred ee-eccceEEeeeccccCCCC-CceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEE
Confidence 65 688999999999876655 5699999999999999999999999999999887643 39999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Q 019277 279 IHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMEQYIFCHQAIVDEL 328 (343)
Q Consensus 279 i~~~~~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt~~QY~f~~~~l~~~l 328 (343)
||.+++++..++ .+||++.|+.||.||..||||.+||.|+|++|+++.
T Consensus 750 iDaml~~~~~e~--~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~AllE~~ 797 (1087)
T KOG4228|consen 750 IDAMLDRLECEG--KVDIYGHVKTLRRQRNNMVQTEEQYIFIHEALLEAC 797 (1087)
T ss_pred eHHHHHHHHhhC--ccceechhHHHHhccccccccHHHHHHHHHHHHHHH
Confidence 999999999876 799999999999999999999999999999999854
No 9
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=100.00 E-value=4.6e-67 Score=479.60 Aligned_cols=256 Identities=41% Similarity=0.711 Sum_probs=228.7
Q ss_pred HHHHHHHhHhccCCCcccccccccccCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCceeeEe
Q 019277 57 ISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFI 136 (343)
Q Consensus 57 ~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~N~~kNR~~~i~p~D~sRV~L~~~~~~~~~~~dYInAs~v~~~~~~~~~~~I 136 (343)
+.+||+.|...... ..++..+..++|..||||+||+|||++||+|...+ ++++||||||||+|+.. .++||
T Consensus 2 ~~~e~~~i~~~~~~----~~~~~~~~~~~n~~kNR~~~v~~~d~~RV~l~~~~---~~~~~YInAs~v~~~~~--~~~fI 72 (258)
T smart00194 2 LEEEFEKLDRLKPD----DESCTVAARPENRDKNRYKDVLPYDHTRVKLTPPP---GEGSDYINASYIDGPNG--PKAYI 72 (258)
T ss_pred hHHHHHHhhccCCC----CccccccCCccccccCCCCCCCCCCCCEeEccCCC---CCCCCceeeeeEecCCC--ccceE
Confidence 67899999765432 24678888999999999999999999999998532 25689999999999853 45899
Q ss_pred eecCCCCCCHHHHHHHHHHcCCCeEEEecccccCccccccccCCCCCCCceEecCceEEEEEEEeeeccEEEEEEEEeec
Q 019277 137 ATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYK 216 (343)
Q Consensus 137 ~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~~~~E~~~~~~c~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~v~~~ 216 (343)
+||+|+++|++|||+||||+++.+||||+...|.++ .+|.+|||.+.+...+|.|+|++.+... ..+++.|.|+|+..
T Consensus 73 ~tQ~P~~~t~~dFW~mv~~~~~~~IVmL~~~~e~~~-~~~~~Ywp~~~~~~~~g~~~V~~~~~~~-~~~~~~~~l~v~~~ 150 (258)
T smart00194 73 ATQGPLPSTVEDFWRMVWEEKVTTIVMLTELEEKGR-EKCAQYWPEEEEPLTYGDITVTLKSVEK-VDDYTIRTLEVTNT 150 (258)
T ss_pred EeCCCchHHHHHHHHHHHhcCCCEEEEeccceeCCE-eeccccCCCCCCcceECCEEEEEEEEEe-cCCEEEEEEEEEEC
Confidence 999999999999999999999999999999999888 8999999988778899999999988776 57899999999987
Q ss_pred CCCCCCeEEEEEecCccCCCCCCCChHHHHHHHHHHHcCCCC-CCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCC
Q 019277 217 ESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPN-FGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALD 295 (343)
Q Consensus 217 ~~~~~~~~v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~~~-~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vd 295 (343)
+.+. .+.|+||||.+|||+++|.+...++++++.++..... .+||+|||++|+||||+|||++++++++..++ .+|
T Consensus 151 ~~~~-~~~v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~--~v~ 227 (258)
T smart00194 151 GCSE-TRTVTHYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGK--EVD 227 (258)
T ss_pred CCCC-cEEEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcC--CCC
Confidence 6544 5699999999999999999999999999998876442 48999999999999999999999999998865 799
Q ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Q 019277 296 LANTVKVFRSQRIGMVQTMEQYIFCHQAIVD 326 (343)
Q Consensus 296 v~~~v~~lR~qR~~~Vqt~~QY~f~~~~l~~ 326 (343)
+.++++.||+||+++|++.+||.|||.+|++
T Consensus 228 v~~~v~~lR~~R~~~v~~~~Qy~f~~~~l~~ 258 (258)
T smart00194 228 IFEIVKELRSQRPGMVQTEEQYIFLYRAILE 258 (258)
T ss_pred HHHHHHHHHhccccccCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999863
No 10
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-65 Score=487.39 Aligned_cols=294 Identities=31% Similarity=0.523 Sum_probs=265.2
Q ss_pred CCCChhhHhHHHHHHHHHHHHhhcchHHHHHHHHHhHhccCCCcccccccccccCCCCCCCCCCCCCCCCCCCeEEeecC
Q 019277 29 ISLTADQYNHCSEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQC 108 (343)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~N~~kNR~~~i~p~D~sRV~L~~~ 108 (343)
+.++.-++.+-+..|+++++.+.++ ..|+.||+.|-..+.- ..++.++..++|..|||..+++||||+||.|+..
T Consensus 707 pA~~nmDISTGHmiLsymedhLrnk-~rlekeWealc~YqaE----pn~r~~aq~e~~a~kNR~~a~LpyDhsrV~l~~~ 781 (1004)
T KOG0793|consen 707 PAQSNMDISTGHMILSYMEDHLRNK-NRLEKEWEALCAYQAE----PNSRFVAQREENAPKNRSLAVLPYDHSRVLLKAE 781 (1004)
T ss_pred ccccccccccchhHHHHHHHHhhCc-hHHHHHHHHHHHhhcC----cchhhhhcccccccccCCCCccccccceeeeccc
Confidence 3445556778888999999999988 8999999999876643 3567788899999999999999999999999865
Q ss_pred CCCCCCCCCcccceeeecCCCCceeeEeeecCCCCCCHHHHHHHHHHcCCCeEEEecccccCccccccccCCCCCCCceE
Q 019277 109 KDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPRE 188 (343)
Q Consensus 109 ~~~~~~~~dYInAs~v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~~~~E~~~~~~c~~YwP~~~~~~~ 188 (343)
. ..+.+||||||+|...+... ..|||||+|+++|+.|||+||||++|.+|||||.+.|++. ..|.+|||.+ |...
T Consensus 782 ~--s~s~~dYiNAS~I~DhDPR~-paYIAtQgPl~stiA~FWQmvWe~G~~vIV~Lt~l~Engv-~qc~rYWPde-Gsel 856 (1004)
T KOG0793|consen 782 N--SHSHSDYINASPIMDHDPRN-PAYIATQGPLPSTIADFWQMVWESGCVVIVMLTPLAENGV-RQCYRYWPDE-GSEL 856 (1004)
T ss_pred c--CccccccccccccccCCCCc-cceeeccCCCchHHHHHHHHHHHcCcEEEEEecChhhcch-hhhhhcCCCC-Ccce
Confidence 3 46788999999999887754 4899999999999999999999999999999999999987 8999999976 7788
Q ss_pred ecCceEEEEEEEeeeccEEEEEEEEeecCCCCCCeEEEEEecCccCCCCCCCChHHHHHHHHHHHcC-CCCCCCEEEEcC
Q 019277 189 FGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL-PPNFGPIVVHCS 267 (343)
Q Consensus 189 ~g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~-~~~~~PivVHCs 267 (343)
|+-|.|.+++++...++|.+|.|.+++..++++ |+|++|||..||+.|+|.+..++++|-+++++. +++..|||||||
T Consensus 857 yhiyEV~LVSEHIWceDfLVRSFYLKNlqtseT-RTvTQFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~s 935 (1004)
T KOG0793|consen 857 YHIYEVNLVSEHIWCEDFLVRSFYLKNLQTSET-RTVTQFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCS 935 (1004)
T ss_pred eeeEEeeeehhhhhhhhHHHHHHHHhhcccccc-eeeeeeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEcc
Confidence 999999999999999999999999999888875 599999999999999999999999999999875 445689999999
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHhcc
Q 019277 268 AGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMEQYIFCHQAIVDELEDLISG 334 (343)
Q Consensus 268 ~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt~~QY~f~~~~l~~~l~~~~~~ 334 (343)
+|.|||||+|+||+++.+|.++- ..+||..++..||.||+|||.|.+||.|++.+|++.+..+++.
T Consensus 936 dGaGRTG~YiliDmvl~Rm~kGa-keIDIaATlEHlRDQR~GmVaTkdQFef~l~aVAeEVnaiLKa 1001 (1004)
T KOG0793|consen 936 DGAGRTGTYILIDMVLNRMAKGA-KEIDIAATLEHLRDQRPGMVATKDQFEFALTAVAEEVNAILKA 1001 (1004)
T ss_pred CCCCccceeeeHHHHHHHHhccc-hhhhHHHHHHHHhhcCCcceeehhhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999864 5899999999999999999999999999999999988877764
No 11
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-64 Score=454.78 Aligned_cols=270 Identities=36% Similarity=0.636 Sum_probs=237.2
Q ss_pred HHHHHhhcchHHHHHHHHHhHhccCCCcccccccccccCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceee
Q 019277 45 FFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLI 124 (343)
Q Consensus 45 ~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~N~~kNR~~~i~p~D~sRV~L~~~~~~~~~~~dYInAs~v 124 (343)
.++....+..-++.+||++|..... ..++..|.++.|..||||.|++|||++||+|.+.. ..+++|||||||+
T Consensus 86 ~~~~~~~dsn~~f~eey~~lk~~g~-----~~~~~aA~l~~n~~knr~~nilpYd~Srvkl~~~~--e~~~~DYinA~~~ 158 (374)
T KOG0791|consen 86 HVKKMSADSNYKFSEEYNELKLVGL-----DQSKLAALLPLNRPKNRYTNILPYDNSRVKLSPVN--EEEGSDYINASYI 158 (374)
T ss_pred hhhhcccccchhhHHHHhhhhhhcc-----cchhhhhhcCCCCCcCCcCCCCCcccccceecccc--ccchhhhhhhhhc
Confidence 3444444455789999999875443 23567888999999999999999999999999764 3578899999999
Q ss_pred ecCCCCceeeEeeecCCCCCCHHHHHHHHHHcCCCeEEEecccccCccccccccCCCCCCCceEecCceEEEEEEEeeec
Q 019277 125 STSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET 204 (343)
Q Consensus 125 ~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~~~~E~~~~~~c~~YwP~~~~~~~~g~~~V~~~~~~~~~~ 204 (343)
.|+.+ ++.|||||+|+++|.++||+||||+++.+|||||...|.++ .+|..|||.+..+..||+++|....+.. ..
T Consensus 159 Pg~~s--~~~fIAtQGPlp~t~~~fW~mvwq~~~~~IVmlt~~~e~~R-~kc~~ywP~~~~~~~~gdi~V~~v~e~~-~~ 234 (374)
T KOG0791|consen 159 PGYNS--PREFIATQGPLPETRDDFWKMVWQQKSHIIVMLTKCNEKGR-VKCDEYWPDEEVPVAYGDITVTMVSEES-LD 234 (374)
T ss_pred CCCCC--cceEEEeeCCCCCChhHHHHHHHHhhcceEEEEeecccccc-hhhhhhcccccccceeccEEEEEechhh-cC
Confidence 99865 46999999999999999999999999999999999999999 9999999998888999999999988754 57
Q ss_pred cEEEEEEEEeecCCCCCCeEEEEEecCccCCCCCCCChHHHHHHHHHHHcCCC-CCCCEEEEcCCCCchhHHHHHHHHHH
Q 019277 205 ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPP-NFGPIVVHCSAGIGRTGAYCTIHNTV 283 (343)
Q Consensus 205 ~~~~r~l~v~~~~~~~~~~~v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~~-~~~PivVHCs~GvGRtGtf~ai~~~~ 283 (343)
++.+|.|.+... +. .+.++||||+.|||+|+|.++..+++|++.+++.-. ..+|++||||+|+||||||+|+|.++
T Consensus 235 ~w~ir~~~l~~~--~~-sr~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LL 311 (374)
T KOG0791|consen 235 EWTIREFRLNYA--GE-SRKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLL 311 (374)
T ss_pred CceEEEEeeecc--cc-cceeEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHH
Confidence 899999999832 23 359999999999999999888999999998876543 34899999999999999999999999
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHH
Q 019277 284 QRILVGDMSALDLANTVKVFRSQRIGMVQTMEQYIFCHQAIVDELED 330 (343)
Q Consensus 284 ~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt~~QY~f~~~~l~~~l~~ 330 (343)
+++..++ .+|++++|..+|.+|+.||||.+||.|+|+++++.|..
T Consensus 312 qq~~~~~--~vdi~~iv~~lR~~R~~mVqte~Qyvfl~~c~~~~l~~ 356 (374)
T KOG0791|consen 312 QQIDSEE--TVDIFGVVLELRSARMLMVQTEDQYVFLHQCVLESLQG 356 (374)
T ss_pred HHhcccc--cccHHHHHHHhhhccccccchHHHHHHHHHHHHHHHhC
Confidence 9998775 79999999999999999999999999999999997754
No 12
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=100.00 E-value=1.1e-61 Score=436.88 Aligned_cols=229 Identities=45% Similarity=0.762 Sum_probs=206.5
Q ss_pred CCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCceeeEeeecCCCCCCHHHHHHHHHHcCCCeEEEeccc
Q 019277 88 SKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRL 167 (343)
Q Consensus 88 ~kNR~~~i~p~D~sRV~L~~~~~~~~~~~dYInAs~v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~~~ 167 (343)
+||||+|++|||++||+|.... .+.+||||||||+|+.. .++||+||+|+.+|++|||+|||++++.+||||++.
T Consensus 1 ~knR~~~~~~~d~~rV~l~~~~---~~~~~yinA~~v~~~~~--~~~fI~tQ~P~~~t~~~FW~mv~~~~~~~IV~l~~~ 75 (231)
T cd00047 1 KKNRYKDILPYDHTRVKLKPDD---DEGSDYINASYIDGYNP--PKAYIATQGPLPNTVEDFWRMVWEQKVPVIVMLTEL 75 (231)
T ss_pred CCCCCCCCCCCCCCEEEccCCC---CCCCCcEEeeeEecCCC--CcceEEcCCCChhhHHHHHHHHHhcCCCEEEEcccc
Confidence 4899999999999999998431 25789999999999864 358999999999999999999999999999999999
Q ss_pred ccCccccccccCCCCCCCceEecCceEEEEEEEeeeccEEEEEEEEeecCCCCCCeEEEEEecCccCCCCCCCChHHHHH
Q 019277 168 VDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVRE 247 (343)
Q Consensus 168 ~E~~~~~~c~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~y~~Wpd~~vP~~~~~~~~ 247 (343)
.|.++ .+|.+|||.+.+...+|.|+|++++... ..+++.|.|+|+..+.+. .+.|+||||.+|||+++|.+...+++
T Consensus 76 ~e~~~-~~~~~Ywp~~~~~~~~g~~~V~~~~~~~-~~~~~~~~l~i~~~~~~~-~~~V~~~~~~~W~d~~~p~~~~~~~~ 152 (231)
T cd00047 76 VEKGR-EKCAQYWPEEEGSLTYGDITVTLVSEEK-LDDYTVRTLKLSNTGTGE-TRTVTHFQYTGWPDHGVPESPDSLLD 152 (231)
T ss_pred ccCCC-ccCccCCCCCCCCeEecCEEEEEEEEEE-cCCEEEEEEEEEECCCCC-ceEEEEEeECCCCCCCccCChHHHHH
Confidence 99887 8999999988788899999999998876 488999999999876544 56999999999999999999899999
Q ss_pred HHHHHHcCC--CCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Q 019277 248 ILKRIYNLP--PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMEQYIFCHQAIV 325 (343)
Q Consensus 248 ~~~~~~~~~--~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt~~QY~f~~~~l~ 325 (343)
+++.++... ...+||+|||++|+||||+|||++++++++..++ .+|+.++++.||+||+++|++.+||.|||++|+
T Consensus 153 ~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~--~~~~~~~v~~iR~~R~~~v~~~~Qy~f~~~~l~ 230 (231)
T cd00047 153 LLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEG--VVDIFQTVKELRSQRPGMVQTEEQYIFLYRAIL 230 (231)
T ss_pred HHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcC--CCCHHHHHHHHHhccccccCCHHHHHHHHHHHh
Confidence 998887653 2348999999999999999999999999998764 799999999999999999999999999999986
Q ss_pred H
Q 019277 326 D 326 (343)
Q Consensus 326 ~ 326 (343)
+
T Consensus 231 ~ 231 (231)
T cd00047 231 E 231 (231)
T ss_pred C
Confidence 3
No 13
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-61 Score=422.23 Aligned_cols=245 Identities=33% Similarity=0.527 Sum_probs=202.1
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCceeeEeeecCCCCCCHHHHHHHHHHc
Q 019277 77 GCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQY 156 (343)
Q Consensus 77 ~~~~a~~~~N~~kNR~~~i~p~D~sRV~L~~~~~~~~~~~dYInAs~v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~ 156 (343)
++.+...+.|-.||||.||+||++|||.|+.. .+.+||||||||+... .+|||||||.++|++|||+|||++
T Consensus 44 s~~~sls~~~~~rNRYsnIvPYe~tRV~Lk~~----k~~~DYINAS~ik~~~----~~yIAtQgP~~~t~ddFW~mvw~n 115 (302)
T COG5599 44 SDDTSLSSTNYARNRYSNIVPYEHTRVHLKYG----KSINDYINASYIKTPR----GKYIATQGPKPETIDDFWKMVWHN 115 (302)
T ss_pred ccccccCccccccccccccccccCceeeccCC----CchhhcccceeeecCC----CceEEecCCCCchHHHHHHHHHhc
Confidence 34456778899999999999999999999853 3578999999999874 259999999999999999999999
Q ss_pred CC--CeEEEecccccCccccccccCCCCCCC-ceEecCceEEEEEEEee-eccEEEEEEEEeecCCCCCCeEEEEEecCc
Q 019277 157 HC--PVIVMLTRLVDNYKMVKCGDYFQAEDG-PREFGNIGIVTKWIKTT-ETALVLRNLEVNYKESEEPPMSVLHIQYPE 232 (343)
Q Consensus 157 ~~--~~IVmL~~~~E~~~~~~c~~YwP~~~~-~~~~g~~~V~~~~~~~~-~~~~~~r~l~v~~~~~~~~~~~v~h~~y~~ 232 (343)
.. .+||||+++.|.++ ++|.+|||...+ ...+|...+.-++.+.. ...+..+.++++..+ +. .+.|.||+|.+
T Consensus 116 ~~~~gvIVmLt~l~E~~r-ekc~qYWp~~~~~~~~~G~~v~~~~~~e~~~d~~~~~~~f~L~~~~-~~-~k~Ihhf~y~n 192 (302)
T COG5599 116 VPNNGVIVMLTSLPEYNR-EKCDQYWPLGYDDTLIIGLRVIKQKKYELFNDNIVNVHNFELTSIN-GP-PKKIHHFQYIN 192 (302)
T ss_pred CCCceEEEEecChHHHhH-HHHhhhCCCCcCcceeeeeEEEEEecccccccceeeeeecccccCC-CC-ccEEEEEEecC
Confidence 88 99999999999999 999999995544 66788555544433322 234567888888765 33 45999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCC-------CCCCHHHHHHHHHH
Q 019277 233 WPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDM-------SALDLANTVKVFRS 305 (343)
Q Consensus 233 Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~-------~~vdv~~~v~~lR~ 305 (343)
|+|.+.| +...+.++++.+....-+.+|++||||||+||||||+|+|.++++...... ..--|+++|..||+
T Consensus 193 W~D~~~p-~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~LRs 271 (302)
T COG5599 193 WVDFNVP-DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRS 271 (302)
T ss_pred ccccCCc-CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHHHHH
Confidence 9999999 888888888888766534599999999999999999999999976543200 01237899999999
Q ss_pred hcccCCCCHHHHHHHHHHHHHHHHHHhc
Q 019277 306 QRIGMVQTMEQYIFCHQAIVDELEDLIS 333 (343)
Q Consensus 306 qR~~~Vqt~~QY~f~~~~l~~~l~~~~~ 333 (343)
||+.|||+.+||.|||++++++.+.++.
T Consensus 272 QRmkmVQn~~Qf~flY~~~~~l~~~q~~ 299 (302)
T COG5599 272 QRMKMVQNKTQFKFLYDAFLELNKSQIK 299 (302)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998855543
No 14
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=100.00 E-value=1.5e-59 Score=422.69 Aligned_cols=232 Identities=37% Similarity=0.693 Sum_probs=203.5
Q ss_pred CCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCceeeEeeecCCCCCCHHHHHHHHHHcCCCeEEEec
Q 019277 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLT 165 (343)
Q Consensus 86 N~~kNR~~~i~p~D~sRV~L~~~~~~~~~~~dYInAs~v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~ 165 (343)
|..|||+.|++|||++||+|... .+++||||||||+++.. .++||+||+|+++|++|||+|||+++|.+||||+
T Consensus 1 n~~knR~~~~~~~d~~rv~l~~~----~~~~~yi~A~~v~~~~~--~~~~I~~q~P~~~t~~~FW~mv~~~~~~~Iv~L~ 74 (235)
T PF00102_consen 1 NREKNRSPDILPYDDSRVKLNPS----PGDSDYINASYVDGYKN--GKKFIVTQAPMPDTIEDFWQMVWEQKVQIIVMLC 74 (235)
T ss_dssp GGGGSSSTTS-BBTTTEEETTTT----TTSTTEESEEEEEESSS--TEEEEEEES-SGGGHHHHHHHHHHTTBSEEEEES
T ss_pred CCccCCCCCCCcCcceEEEecCC----CCccchhhhhhhccccc--hhhheeecccccccccceehheeeccccceeccc
Confidence 78899999999999999999532 23468999999998853 4699999999999999999999999999999999
Q ss_pred ccccCccccccccCCCCCCC-ceEecCceEEEE-EEEeeeccEEEEEEEEeecCCCCCCeEEEEEecCccCCCCCCCChH
Q 019277 166 RLVDNYKMVKCGDYFQAEDG-PREFGNIGIVTK-WIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTL 243 (343)
Q Consensus 166 ~~~E~~~~~~c~~YwP~~~~-~~~~g~~~V~~~-~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~y~~Wpd~~vP~~~~ 243 (343)
+..|.+. ..|..|||.+.+ ...+|.|+|++. ........+++|.|.|+..+.+...+.+.||||.+||++++|.+..
T Consensus 75 ~~~e~~~-~~~~~y~P~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~v~~~~~~~W~~~~~P~~~~ 153 (235)
T PF00102_consen 75 SFDESGD-EKCDQYWPLKEGESLKFGDYTVKCKEKIEENSKHYTVRKLEVTNGKSKKKSRTVTHFHYTNWPDDGVPPSPE 153 (235)
T ss_dssp BSEETTE-ESS--TSTSSSSSEEEETTEEEEEEEEEEEEESSEEEEEEEEEETTTTEEEEEEEEEEEESSSSSSSGSSSH
T ss_pred ccccccc-cccccccccccccccccccccccccccccccccceEEeeccccccccccccccccceeeeeccccccccccc
Confidence 9999877 899999995554 889999999999 6664678999999999987665334699999999999999999999
Q ss_pred HHHHHHHHHHcCC-CCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCCHHHHHHHHH
Q 019277 244 AVREILKRIYNLP-PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMEQYIFCHQ 322 (343)
Q Consensus 244 ~~~~~~~~~~~~~-~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt~~QY~f~~~ 322 (343)
.++++++.+.+.. ...+||+|||++|+||||+||+++++++++..++ .+|+.++++.||++|+++|++.+||.|||.
T Consensus 154 ~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~--~~~v~~~~~~lR~~R~~~i~~~~qy~f~~~ 231 (235)
T PF00102_consen 154 SFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEG--EVDVFEIVKKLRQQRPGAIQSPEQYRFCYM 231 (235)
T ss_dssp HHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHS--EECHHHHHHHHHTTSTTSSSSHHHHHHHHH
T ss_pred hhhhhhhhccccccCCccceEeecccccccccccccchhhcccccccc--chhhHHHHHHHHhhCCCccCCHHHHHHHHH
Confidence 9999998887654 3348999999999999999999999999999876 699999999999999999999999999999
Q ss_pred HHHH
Q 019277 323 AIVD 326 (343)
Q Consensus 323 ~l~~ 326 (343)
+++|
T Consensus 232 ~~~e 235 (235)
T PF00102_consen 232 AVLE 235 (235)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9986
No 15
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-57 Score=459.02 Aligned_cols=291 Identities=32% Similarity=0.510 Sum_probs=242.0
Q ss_pred CCCCCCCCCCChhhHhHHHHHHHH-------------HHHHhh--------cchHHHHHHHHHhHhccCCCccccccccc
Q 019277 22 AVDFPPRISLTADQYNHCSEALSF-------------FKEKLQ--------NKSREISQEFARLQASRIKPSEMARGCTV 80 (343)
Q Consensus 22 ~~~~p~~~~~~~~~~~~~~~~~~~-------------~~~~~~--------~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~ 80 (343)
-+.....+.+|.+|+-.+.++|.. |+..+. ....++++||++|........ ....
T Consensus 772 lR~QR~~mVQt~eQYiFi~~AllE~~~~G~T~i~~~~~~~~~~~l~~~~p~~~~t~le~EF~~L~~~~~~~~----~~~~ 847 (1087)
T KOG4228|consen 772 LRRQRNNMVQTEEQYIFIHEALLEACLCGDTEVPASTLAPYSQKLKRIDPPENKTGLEEEFKTLNSCKPRTR----MMIC 847 (1087)
T ss_pred HHhccccccccHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHhccCCCCCCCcchHHHHHHHhhccccch----hhhc
Confidence 345678889999999888887742 222111 123589999999987664432 1222
Q ss_pred ccCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCceeeEeeecCCCCCCHHHHHHHHHHcCCCe
Q 019277 81 ALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPV 160 (343)
Q Consensus 81 a~~~~N~~kNR~~~i~p~D~sRV~L~~~~~~~~~~~dYInAs~v~~~~~~~~~~~I~tQ~Pl~~T~~dFW~MV~e~~~~~ 160 (343)
|.+++|+.|||+.+|+|||++||.|.+.. +.++||||||+|+||.. +..|||||+|+.+|++|||||||+++|.+
T Consensus 848 ~~l~~N~~KNR~~~i~P~d~~rv~L~~~~---G~~sdYINAs~idgy~~--~~~fivtq~PL~~T~~DFWrmi~d~~~ts 922 (1087)
T KOG4228|consen 848 GNLPENKSKNRQVNILPYDRNRVILIPTH---GESSDYINASFIDGYRQ--PKAFIVTQGPLAETVEDFWRMIWDQNVTS 922 (1087)
T ss_pred cccchhcccccccccCCchhcccceeccC---CCcccccchhhhcccCC--cceEEEecCCcccchHHHHHHhhccceeE
Confidence 88999999999999999999999999764 34889999999999954 56999999999999999999999999999
Q ss_pred EEEecccccCccccccccCCCCCCCceEecCceEEEEEEEeeeccEEEEEEEEeecCCCCCCeEEEEEecCccCCCCCCC
Q 019277 161 IVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPR 240 (343)
Q Consensus 161 IVmL~~~~E~~~~~~c~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~y~~Wpd~~vP~ 240 (343)
||||+++.+. ++|.+|||. .|...||.+.|..+.... ...++.|.|.|++...+. .|+|.||||++||..+.|.
T Consensus 923 iVmL~~l~~~---~~C~qyw~~-~g~~~yg~i~Ve~~~~~~-~~~~t~r~f~i~n~~~~~-~r~v~qfq~~~WP~~~~~p 996 (1087)
T KOG4228|consen 923 IVMLTELKHP---EKCPQYWPP-EGSQRYGPIEVEDMNEHI-NPQYTAREFGVTNEREKQ-SRTVRQFQFTGWPEYGKPP 996 (1087)
T ss_pred EEEecccCcc---cccccccCC-cCceecCcEEEEeccccc-chhhhhhhheeeeccccC-ceEEEEEEecCCcccCcCC
Confidence 9999998876 799999998 578899999999988765 578899999999877544 5699999999999998776
Q ss_pred ChHHHHH-HHHHHHcC--CCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCCHHHH
Q 019277 241 DTLAVRE-ILKRIYNL--PPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMEQY 317 (343)
Q Consensus 241 ~~~~~~~-~~~~~~~~--~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt~~QY 317 (343)
.....+. +...+.+. ....+|++|||++|+||||+|||+.+++++++.++ .+||+++|+.||.+|++||++.+||
T Consensus 997 ~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~--~vDVfq~vk~Lr~~rp~mv~t~~QY 1074 (1087)
T KOG4228|consen 997 QSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMRKEG--VVDVFQTVKTLRFQRPGMVDTSDQY 1074 (1087)
T ss_pred CCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcC--ceeeehhhhhhhhcCccccCcHHHH
Confidence 5544333 33333222 22259999999999999999999999999999876 8999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 019277 318 IFCHQAIVDELE 329 (343)
Q Consensus 318 ~f~~~~l~~~l~ 329 (343)
.|||+++++|+.
T Consensus 1075 ~fcYdv~~~y~~ 1086 (1087)
T KOG4228|consen 1075 QFCYDVALEYLG 1086 (1087)
T ss_pred HHHHHHHHHhhc
Confidence 999999999874
No 16
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=100.00 E-value=8.8e-54 Score=406.89 Aligned_cols=257 Identities=17% Similarity=0.257 Sum_probs=196.4
Q ss_pred HHHHHHHHhhcchHHHHHHHHHhHhccCCCcccccccccccCCCCCCCCC--CCCCCCCCCCeEEeecCCCCCCCCCCcc
Q 019277 42 ALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNR--YTDILPFDKNRVVLKQCKDYRPAARGYI 119 (343)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~N~~kNR--~~~i~p~D~sRV~L~~~~~~~~~~~dYI 119 (343)
+.+.|...+..- ..+..|.+.+.....-+ .+.+. --...-| ..+|+|+|||||+|+ +++||
T Consensus 261 a~~~~~~~~~~~-~~~~~~~~~~~ag~p~~----~~~~~----~~~~~~~~~~~~I~~~~~TrV~ls--------~g~yI 323 (535)
T PRK15375 261 AVKKIHVIAKEL-KNVTAELEKIEAGAPMP----QTMSG----PTLGLARFAVSSIPINQQTQVKLS--------DGMPV 323 (535)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhcCCCCc----cccCC----ccchhhHHHhcccCccccceEEcC--------CCCcc
Confidence 344444444333 45666776665443211 11111 1123345 469999999999997 26999
Q ss_pred cceeeecCCCCceeeEeeecCCCC--CCHHHHHHHHHHcCCCeEEEecccccCccccccccCCCCCCCceEecCceEEEE
Q 019277 120 NASLISTSSSEKVSQFIATQGPLP--HTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTK 197 (343)
Q Consensus 120 nAs~v~~~~~~~~~~~I~tQ~Pl~--~T~~dFW~MV~e~~~~~IVmL~~~~E~~~~~~c~~YwP~~~~~~~~g~~~V~~~ 197 (343)
|||||+ +.. ++.+|++|.|+. +|++|||+||||++|.+|||||...|.++ .+|.+||+ ++..||+|+|++.
T Consensus 324 ~ANyI~-~~~--k~~aIa~QYP~nt~eTieDFWrMVWEn~~~VIVMLT~l~E~g~-~KC~pYW~---~s~tYGdItVts~ 396 (535)
T PRK15375 324 PVNTLT-FDG--KPVALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSEDQMQA-KQLPPYFR---GSYTFGEVHTNSQ 396 (535)
T ss_pred ccceee-ecC--ccceEeccCCCCchhhHHHHHHHHHHcCCCEEEEeeccccCcc-cccCccCC---CcceeccEEEEEE
Confidence 999999 543 347999999976 89999999999999999999999999887 89999995 5678999999988
Q ss_pred EEEeeeccEEEEEEEEeecCCCCCCeEEEEEecCccCCCCCCCChHHHHHHHHHHHcCCC---------CCCCEEEEcCC
Q 019277 198 WIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPP---------NFGPIVVHCSA 268 (343)
Q Consensus 198 ~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~~---------~~~PivVHCs~ 268 (343)
+++....++.+|.+.+.... .+.++.|.||||++|||||+|.+...+++|++.++.... +.+++||||||
T Consensus 397 seesls~g~iIR~f~L~Ik~-~E~R~tV~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSA 475 (535)
T PRK15375 397 KVSSASQGEAIDQYNMQLSC-GEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLG 475 (535)
T ss_pred EEEeccCCceEEEEEEEEec-CCceeEEEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCC
Confidence 77654345777777665443 333558999999999999999888888888888765421 11334899999
Q ss_pred CCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhccc-CCCCHHHHHHHHHHHHHHHH
Q 019277 269 GIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIG-MVQTMEQYIFCHQAIVDELE 329 (343)
Q Consensus 269 GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR~~-~Vqt~~QY~f~~~~l~~~l~ 329 (343)
|+||||||||++.+. .. +.+++.++|+.||.+|++ |||+.+||.+++.+-...|.
T Consensus 476 GVGRTGTFIAi~llk----~~--~~~sle~IV~dlR~qRng~MVQt~eQy~~l~~~~~~~~~ 531 (535)
T PRK15375 476 GVGRTGTMAAALVLK----DN--PHSNLEQVRADFRNSRNNRMLEDASQFVQLKAMQAQLLM 531 (535)
T ss_pred CCchHHHHHHHHHHh----cc--ccCCHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHhh
Confidence 999999999997632 12 368999999999999999 99999999999998776653
No 17
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-51 Score=400.73 Aligned_cols=264 Identities=29% Similarity=0.458 Sum_probs=201.8
Q ss_pred HHHHHHHHhHhccCCCcccccccccccCCCCCCCCCCCCCCCCCCCeEEeecCCCCCCCCCCcccceeeecCCCCceeeE
Q 019277 56 EISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQF 135 (343)
Q Consensus 56 ~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~N~~kNR~~~i~p~D~sRV~L~~~~~~~~~~~dYInAs~v~~~~~~~~~~~ 135 (343)
++..+|.++......... .. .......|..||||.||.|||++||+|... ...||||||||+++.. . +.|
T Consensus 100 ~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~kNr~~dv~~~d~~rV~l~~~-----~~~dyI~A~~v~~~~~-~-~~~ 169 (415)
T KOG0789|consen 100 LIVEMFKQFRSNKVEKES-SH--LCDAFLKNMDKNRYSDVQCLDHTRVKLKPP-----QDKDYIHASKIYFPKG-P-RTA 169 (415)
T ss_pred ccHHHHHHHHHhhccCCc-ch--hhhhhhccccccccCCcCcccCCeeecCCC-----CCcccchhhccCCcCC-C-cCc
Confidence 455555555544322111 01 233356788899999999999999999832 1679999999999742 2 589
Q ss_pred eeecCCCCCCHHHHHHHHHHcCCCeEEEecccccCccccccccCCCCCCC-ceEecCceEEEEEEEeee-----ccEEEE
Q 019277 136 IATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDG-PREFGNIGIVTKWIKTTE-----TALVLR 209 (343)
Q Consensus 136 I~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~~~~E~~~~~~c~~YwP~~~~-~~~~g~~~V~~~~~~~~~-----~~~~~r 209 (343)
|+||+|+++|.+|||+|||++++..|||||...|.++ .+|.+|||.+.| ...|+.+........... ..+...
T Consensus 170 I~tQ~Pl~~t~~dFW~mv~~~k~~~Ivml~~~~E~~~-~kc~~Y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (415)
T KOG0789|consen 170 ILTQAPLSKTTEDFWRMVFEEKVESVVLLCSDEELGA-AECASYFPSKRGVKLTFLEFGKKFVENRKVEMKQQDQTSTVG 248 (415)
T ss_pred eecCCCCcccHHHHHHHHHHcCCCEEEEecchhhccH-HHHhhcCcccCCCeeeecccceeEEEeeeeecccccccceee
Confidence 9999999999999999999999999999999999998 999999999875 556776654433222111 222222
Q ss_pred EEEEeecCCCCCCeEEEEEecCccCCCCCCCChHHHHHHHHH-HHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHc
Q 019277 210 NLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKR-IYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILV 288 (343)
Q Consensus 210 ~l~v~~~~~~~~~~~v~h~~y~~Wpd~~vP~~~~~~~~~~~~-~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~ 288 (343)
.+.+...+.....+.|.|+||++|||+|+|.+...++.+++. ....+...+|++||||+|+||||||+++++++.++..
T Consensus 249 ~~~~~~~~~~~~~~~v~~~~~~~WPd~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~ 328 (415)
T KOG0789|consen 249 LLLLVLPEGLEISSSVVHYHYINWPDHGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQG 328 (415)
T ss_pred EEEeecCCCccccceEEEEeeCCCccccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhc
Confidence 222222222222358999999999999999999999988874 2223334589999999999999999999988888764
Q ss_pred CCCCCCCHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHH
Q 019277 289 GDMSALDLANTVKVFRSQRIGMVQTMEQYIFCHQAIVDELEDL 331 (343)
Q Consensus 289 ~~~~~vdv~~~v~~lR~qR~~~Vqt~~QY~f~~~~l~~~l~~~ 331 (343)
+ ....++.++++.+|.||+++||+..||.|+|+++++|++..
T Consensus 329 ~-~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~~~~~~~~~~~ 370 (415)
T KOG0789|consen 329 P-EGEPPIDEILREIRYQRPGAVQSPLQYLFIYAATLKYIKKV 370 (415)
T ss_pred C-CCCccHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHc
Confidence 3 24678999999999999999999999999999999999873
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.91 E-value=2.7e-24 Score=168.87 Aligned_cols=101 Identities=43% Similarity=0.771 Sum_probs=89.7
Q ss_pred EEEEecCccCCCCCCCChHHHHHHHHHHHcCCC---CCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 019277 225 VLHIQYPEWPDHGVPRDTLAVREILKRIYNLPP---NFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVK 301 (343)
Q Consensus 225 v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~~---~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~ 301 (343)
+.||||.+|||+++|.....+++++..++.... ..+||+|||++|+||||+||+++.++.++..+. ..+++.++++
T Consensus 2 ~~~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~-~~~~~~~~~~ 80 (105)
T smart00404 2 VKHYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESET-GEVDIFQTVK 80 (105)
T ss_pred eEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcC-CCCCHHHHHH
Confidence 789999999999999988899999888765432 248999999999999999999999999887651 2699999999
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHHH
Q 019277 302 VFRSQRIGMVQTMEQYIFCHQAIVD 326 (343)
Q Consensus 302 ~lR~qR~~~Vqt~~QY~f~~~~l~~ 326 (343)
.+|.+|++++++.+||.|+|.++++
T Consensus 81 ~ir~~r~~~~~~~~q~~~~~~~~~~ 105 (105)
T smart00404 81 ELRKQRPGMVQTFEQYLFLYRALLE 105 (105)
T ss_pred HHHhhhhhhCCcHHHHHHHHHHHhC
Confidence 9999999999999999999999863
No 19
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.91 E-value=2.7e-24 Score=168.87 Aligned_cols=101 Identities=43% Similarity=0.771 Sum_probs=89.7
Q ss_pred EEEEecCccCCCCCCCChHHHHHHHHHHHcCCC---CCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 019277 225 VLHIQYPEWPDHGVPRDTLAVREILKRIYNLPP---NFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVK 301 (343)
Q Consensus 225 v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~~---~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~ 301 (343)
+.||||.+|||+++|.....+++++..++.... ..+||+|||++|+||||+||+++.++.++..+. ..+++.++++
T Consensus 2 ~~~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~-~~~~~~~~~~ 80 (105)
T smart00012 2 VKHYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESET-GEVDIFQTVK 80 (105)
T ss_pred eEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcC-CCCCHHHHHH
Confidence 789999999999999988899999888765432 248999999999999999999999999887651 2699999999
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHHH
Q 019277 302 VFRSQRIGMVQTMEQYIFCHQAIVD 326 (343)
Q Consensus 302 ~lR~qR~~~Vqt~~QY~f~~~~l~~ 326 (343)
.+|.+|++++++.+||.|+|.++++
T Consensus 81 ~ir~~r~~~~~~~~q~~~~~~~~~~ 105 (105)
T smart00012 81 ELRKQRPGMVQTFEQYLFLYRALLE 105 (105)
T ss_pred HHHhhhhhhCCcHHHHHHHHHHHhC
Confidence 9999999999999999999999863
No 20
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.68 E-value=3.6e-16 Score=133.21 Aligned_cols=134 Identities=21% Similarity=0.354 Sum_probs=95.8
Q ss_pred eEeeecCCCCCCHHHHHHHHHHcCCCeEEEecccccCccccccccCCCCCCCceEecCceEEEEEEEeeeccEEEEEEEE
Q 019277 134 QFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEV 213 (343)
Q Consensus 134 ~~I~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~~~~E~~~~~~c~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~v 213 (343)
+||++-+|+++++.+|....-++++..||.++.. +|+.+ .+
T Consensus 17 r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~-----------~~~~~---------------------~~------- 57 (166)
T PTZ00242 17 KFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGP-----------TYDAE---------------------LL------- 57 (166)
T ss_pred EEEEecCCCcccHHHHHHHHHhCCCeEEEecCCC-----------CCCHH---------------------HH-------
Confidence 7999999999999999999999999999998631 11100 00
Q ss_pred eecCCCCCCeEEEEEecCcc--CCCCCCCCh--HHHHHHHHHHHcC-CCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHc
Q 019277 214 NYKESEEPPMSVLHIQYPEW--PDHGVPRDT--LAVREILKRIYNL-PPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILV 288 (343)
Q Consensus 214 ~~~~~~~~~~~v~h~~y~~W--pd~~vP~~~--~~~~~~~~~~~~~-~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~ 288 (343)
...+++|..| +|.++|... ..+++++...... ....+||+|||.+|+||||+||++..+ ..
T Consensus 58 ----------~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~----~~ 123 (166)
T PTZ00242 58 ----------EKNGIEVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALV----EY 123 (166)
T ss_pred ----------HHCCCEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHH----Hh
Confidence 1112233334 566666332 3455555554432 123489999999999999999988633 22
Q ss_pred CCCCCCCHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Q 019277 289 GDMSALDLANTVKVFRSQRIGMVQTMEQYIFCHQAI 324 (343)
Q Consensus 289 ~~~~~vdv~~~v~~lR~qR~~~Vqt~~QY~f~~~~l 324 (343)
+ .+++.++++.+|++|++++ +..|+.|+.+..
T Consensus 124 ~---~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~ 155 (166)
T PTZ00242 124 G---GMEPLDAVGFVREKRKGAI-NQTQLQFLKKYK 155 (166)
T ss_pred C---CCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHH
Confidence 3 3799999999999999999 589999976654
No 21
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.51 E-value=2.5e-13 Score=120.07 Aligned_cols=134 Identities=19% Similarity=0.290 Sum_probs=94.5
Q ss_pred eeEeeecCCCCCCHHHHHHHHHHcCCCeEEEecccccCccccccccCCCCCCCceEecCceEEEEEEEeeeccEEEEEEE
Q 019277 133 SQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLE 212 (343)
Q Consensus 133 ~~~I~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~~~~E~~~~~~c~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~ 212 (343)
-+||++-+|+..++.+|..-..+.++..||-+|... | +.+ .+
T Consensus 92 ~rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~----------Y-d~~---------------------~~------ 133 (241)
T PTZ00393 92 IKILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERT----------Y-NDG---------------------EI------ 133 (241)
T ss_pred eeEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCC----------C-CHH---------------------HH------
Confidence 389999999999999999999999999999986421 2 110 00
Q ss_pred EeecCCCCCCeEEEEEecCccCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCC
Q 019277 213 VNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMS 292 (343)
Q Consensus 213 v~~~~~~~~~~~v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~ 292 (343)
.. . .+.+++ ..|||+++|. ...+.+++..+.......++|+|||.+|+||||+++|+..+ + .+
T Consensus 134 ---~~----~-GI~~~~-lpipDg~aPs-~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI-~----~G-- 196 (241)
T PTZ00393 134 ---TS----A-GINVHE-LIFPDGDAPT-VDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLI-E----FG-- 196 (241)
T ss_pred ---HH----c-CCeEEE-eecCCCCCCC-HHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHH-H----cC--
Confidence 00 0 223333 3689998884 33333333333322223378999999999999999876543 2 22
Q ss_pred CCCHHHHHHHHHHhcccCCCCHHHHHHHHHH
Q 019277 293 ALDLANTVKVFRSQRIGMVQTMEQYIFCHQA 323 (343)
Q Consensus 293 ~vdv~~~v~~lR~qR~~~Vqt~~QY~f~~~~ 323 (343)
.+..+++..+|+.|++++ +..|+.|+.+.
T Consensus 197 -mspeeAI~~VR~~RPgAI-n~~Q~~fL~~y 225 (241)
T PTZ00393 197 -MDPIDAIVFIRDRRKGAI-NKRQLQFLKAY 225 (241)
T ss_pred -CCHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Confidence 689999999999999999 57899986544
No 22
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.43 E-value=1.3e-12 Score=111.80 Aligned_cols=91 Identities=26% Similarity=0.345 Sum_probs=73.7
Q ss_pred EEEEecCccCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 019277 225 VLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFR 304 (343)
Q Consensus 225 v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR 304 (343)
+.|+++ -.+|.+.| ++..+.+|++.+..... .|-|.|||.+|.||||+++|+.++... .+.-.++|..||
T Consensus 116 i~h~~l-~f~Dg~tP-~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liAc~lmy~~-------g~ta~eaI~~lR 185 (225)
T KOG1720|consen 116 IDHHDL-FFADGSTP-TDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIACYLMYEY-------GMTAGEAIAWLR 185 (225)
T ss_pred ceeeee-ecCCCCCC-CHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHHHHHHHHh-------CCCHHHHHHHHH
Confidence 444443 35777777 67777788877765554 488999999999999999998877652 378899999999
Q ss_pred HhcccCCCCHHHHHHHHHHHH
Q 019277 305 SQRIGMVQTMEQYIFCHQAIV 325 (343)
Q Consensus 305 ~qR~~~Vqt~~QY~f~~~~l~ 325 (343)
..|||||++++|+.++++--.
T Consensus 186 ~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 186 ICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred hcCCccccCHHHHHHHHHHHH
Confidence 999999999999999888766
No 23
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.21 E-value=1.1e-10 Score=96.30 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=66.5
Q ss_pred EEEEEecCccCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 019277 224 SVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVF 303 (343)
Q Consensus 224 ~v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~l 303 (343)
...|+.+.+|++...+.....+.+++...... .+||+|||.+|.||||+++++..+..+ ..++.++++.+
T Consensus 49 ~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~---~~~vlVHC~~G~~Rs~~~~~~~l~~~~-------~~~~~~a~~~v 118 (139)
T cd00127 49 NYLYVPILDLPSQDISKYFDEAVDFIDDAREK---GGKVLVHCLAGVSRSATLVIAYLMKTL-------GLSLREAYEFV 118 (139)
T ss_pred eEEEEEceeCCCCChHHHHHHHHHHHHHHHhc---CCcEEEECCCCCchhHHHHHHHHHHHc-------CCCHHHHHHHH
Confidence 67888888888655544445566666655432 379999999999999999986655432 37999999999
Q ss_pred HHhcccCCCCHHHHHHH
Q 019277 304 RSQRIGMVQTMEQYIFC 320 (343)
Q Consensus 304 R~qR~~~Vqt~~QY~f~ 320 (343)
|++|+.+..+..+...+
T Consensus 119 r~~r~~~~~~~~~~~~l 135 (139)
T cd00127 119 KSRRPIISPNAGFMRQL 135 (139)
T ss_pred HHHCCccCCCHHHHHHH
Confidence 99999988888777654
No 24
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.06 E-value=9.6e-10 Score=95.13 Aligned_cols=88 Identities=25% Similarity=0.241 Sum_probs=66.0
Q ss_pred ccCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCC
Q 019277 232 EWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMV 311 (343)
Q Consensus 232 ~Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR~~~V 311 (343)
.++|+.+|+ ...+.+++..+.......+.|+|||..|+|||||++|...++.. + .....+.+..+|..|++++
T Consensus 79 ~~~D~~~p~-~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~----~--~~~~~~~i~~~~~~r~~~v 151 (180)
T COG2453 79 PILDGTVPD-LEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYG----G--LSLADEAIAVKRRRRPGAV 151 (180)
T ss_pred eecCCCCCc-HHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHc----C--CCCHHHHHHHHHhcCCccc
Confidence 678988884 34444444444433333358999999999999999998777652 1 3567788888999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 019277 312 QTMEQYIFCHQAIVD 326 (343)
Q Consensus 312 qt~~QY~f~~~~l~~ 326 (343)
.+..|+.|..+....
T Consensus 152 ~~~~q~~~~~e~~~~ 166 (180)
T COG2453 152 VTEIQHLFELEQELF 166 (180)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999998777654
No 25
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.03 E-value=3.8e-09 Score=87.19 Aligned_cols=88 Identities=15% Similarity=0.136 Sum_probs=59.4
Q ss_pred EEEEecCccCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 019277 225 VLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFR 304 (343)
Q Consensus 225 v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR 304 (343)
+.++++ .+.|...+.....+...+..+.......+||+|||.+|.||||+++++..+.. . ..++.++++.+|
T Consensus 45 ~~~~~i-pi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~----~---~~~~~~A~~~v~ 116 (138)
T smart00195 45 FTYLGV-PILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKY----R---NLSLNDAYDFVK 116 (138)
T ss_pred CEEEEE-ECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHH----h---CCCHHHHHHHHH
Confidence 344444 34554333233333333444433333447999999999999999998765442 2 379999999999
Q ss_pred HhcccCCCCHHHHHHH
Q 019277 305 SQRIGMVQTMEQYIFC 320 (343)
Q Consensus 305 ~qR~~~Vqt~~QY~f~ 320 (343)
..|+.+..+..|+.-+
T Consensus 117 ~~R~~~~p~~~~~~qL 132 (138)
T smart00195 117 DRRPIISPNFGFLRQL 132 (138)
T ss_pred HHCCccCCCHhHHHHH
Confidence 9999999998877654
No 26
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.85 E-value=4.7e-08 Score=77.99 Aligned_cols=129 Identities=22% Similarity=0.476 Sum_probs=87.5
Q ss_pred eeEeeecCCCCCCHHHHHHHHHHcCCCeEEEecccccCccccccccCCCCCCCceEecCceEEEEEEEeeeccEEEEEEE
Q 019277 133 SQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLE 212 (343)
Q Consensus 133 ~~~I~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~~~~E~~~~~~c~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~ 212 (343)
-+|++|-.|...|+..|-.-+-.+++.++|-.|...-+ . .+ .+ ..
T Consensus 17 MrFLIThnPtnaTln~fieELkKygvttvVRVCe~TYd----------t---~~------------le--k~-------- 61 (173)
T KOG2836|consen 17 MRFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPTYD----------T---TP------------LE--KE-------- 61 (173)
T ss_pred eEEEEecCCCchhHHHHHHHHHhcCCeEEEEecccccC----------C---ch------------hh--hc--------
Confidence 38999999999999999999999999999998853211 0 00 00 01
Q ss_pred EeecCCCCCCeEEEEEecCccC-CCCCCCChHH---HHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHc
Q 019277 213 VNYKESEEPPMSVLHIQYPEWP-DHGVPRDTLA---VREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILV 288 (343)
Q Consensus 213 v~~~~~~~~~~~v~h~~y~~Wp-d~~vP~~~~~---~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~ 288 (343)
. ++..+|| ++|.|....- .+.++..-.+..+. .-|-|||-+|+||+-+++|+..+- .
T Consensus 62 ---------G-----I~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~-~cvavhcvaglgrapvlvalalie----~ 122 (173)
T KOG2836|consen 62 ---------G-----ITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPG-CCVAVHCVAGLGRAPVLVALALIE----A 122 (173)
T ss_pred ---------C-----ceEeecccccCCCCchHHHHHHHHHHHHHHhhCCC-CeEEEEeecccCcchHHHHHHHHH----c
Confidence 1 1233687 6677754432 23333322222222 568999999999999999875432 2
Q ss_pred CCCCCCCHHHHHHHHHHhcccCCCCHHHHHHH
Q 019277 289 GDMSALDLANTVKVFRSQRIGMVQTMEQYIFC 320 (343)
Q Consensus 289 ~~~~~vdv~~~v~~lR~qR~~~Vqt~~QY~f~ 320 (343)
+ ....+.|..+|++|.|++.+ .|+.|+
T Consensus 123 -g---mkyedave~ir~krrga~n~-kql~~l 149 (173)
T KOG2836|consen 123 -G---MKYEDAVEMIRQKRRGAINS-KQLLYL 149 (173)
T ss_pred -c---ccHHHHHHHHHHHhhccccH-HHHHHH
Confidence 2 56788999999999999865 676664
No 27
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=98.79 E-value=3.3e-08 Score=80.94 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCCHHHHHHH
Q 019277 241 DTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMEQYIFC 320 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt~~QY~f~ 320 (343)
....+.+++...... .++|+|||.+|+||||+++++..+... ..++.++++.+|..|+.+..+..|+..+
T Consensus 58 ~~~~~~~~i~~~~~~---~~~VlVHC~~G~~RS~~v~~ayLm~~~-------~~~~~~A~~~v~~~rp~~~~~~~~~~~L 127 (133)
T PF00782_consen 58 HLDQAVEFIENAISE---GGKVLVHCKAGLSRSGAVAAAYLMKKN-------GMSLEEAIEYVRSRRPQINPNPSFIRQL 127 (133)
T ss_dssp GHHHHHHHHHHHHHT---TSEEEEEESSSSSHHHHHHHHHHHHHH-------TSSHHHHHHHHHHHSTTSTHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcc---cceeEEEeCCCcccchHHHHHHHHHHc-------CCCHHHHHHHHHHHCCCCCCCHHHHHHH
Confidence 344556666655332 378999999999999999886654432 3799999999999999998888887765
Q ss_pred HH
Q 019277 321 HQ 322 (343)
Q Consensus 321 ~~ 322 (343)
+.
T Consensus 128 ~~ 129 (133)
T PF00782_consen 128 YE 129 (133)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 28
>PRK12361 hypothetical protein; Provisional
Probab=98.30 E-value=2.8e-06 Score=86.08 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=60.6
Q ss_pred CCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCC
Q 019277 234 PDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQT 313 (343)
Q Consensus 234 pd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt 313 (343)
.|+..| +...+.+.++.+.+.....++|+|||.+|.|||+++++...+.. +. ..++.++++.+|+.|+....+
T Consensus 151 ~D~~~p-~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~----~~--~~~~~eA~~~vr~~Rp~v~~n 223 (547)
T PRK12361 151 LDHSVP-TLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCK----DP--DLTVEEVLQQIKQIRKTARLN 223 (547)
T ss_pred CCCCCC-cHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHh----cc--CCCHHHHHHHHHHHCCCCCCC
Confidence 355556 45556555555554433347999999999999999988664432 11 378999999999999999999
Q ss_pred HHHHHHHHH
Q 019277 314 MEQYIFCHQ 322 (343)
Q Consensus 314 ~~QY~f~~~ 322 (343)
..|...+-.
T Consensus 224 ~~q~~~l~~ 232 (547)
T PRK12361 224 KRQLRALEK 232 (547)
T ss_pred HHHHHHHHH
Confidence 999886543
No 29
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=98.12 E-value=6.6e-06 Score=69.97 Aligned_cols=73 Identities=25% Similarity=0.397 Sum_probs=43.5
Q ss_pred EEEEEecCccCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 019277 224 SVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVF 303 (343)
Q Consensus 224 ~v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~l 303 (343)
.+.|+....|.+..++.+...+.+.++.+.... ..||+|||..|..|||+.+|+ +++++ ..++.+++.++
T Consensus 58 ~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~--n~PvLiHC~~G~~rTG~vvg~---lRk~Q-----~W~~~~i~~Ey 127 (164)
T PF03162_consen 58 KLIHIPMSSSKDPWVPISEEQVAEALEIILDPR--NYPVLIHCNHGKDRTGLVVGC---LRKLQ-----GWSLSSIFDEY 127 (164)
T ss_dssp EEEE-------GGG----HHHHHHHHHHHH-GG--G-SEEEE-SSSSSHHHHHHHH---HHHHT-----TB-HHHHHHHH
T ss_pred eEEEeccccccCccccCCHHHHHHHHHHHhCCC--CCCEEEEeCCCCcchhhHHHH---HHHHc-----CCCHHHHHHHH
Confidence 556666666655455666777777777664433 379999999999999999984 44442 38999999999
Q ss_pred HHh
Q 019277 304 RSQ 306 (343)
Q Consensus 304 R~q 306 (343)
|.-
T Consensus 128 ~~f 130 (164)
T PF03162_consen 128 RRF 130 (164)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
No 30
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=98.07 E-value=4.7e-06 Score=69.96 Aligned_cols=126 Identities=19% Similarity=0.214 Sum_probs=56.9
Q ss_pred CCCcccceeeecCCCCceeeEeeecCCCCC------CHHHHHHHHHHcCCCeEEEecccccCccccccccCCCCCCCceE
Q 019277 115 ARGYINASLISTSSSEKVSQFIATQGPLPH------TYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPRE 188 (343)
Q Consensus 115 ~~dYInAs~v~~~~~~~~~~~I~tQ~Pl~~------T~~dFW~MV~e~~~~~IVmL~~~~E~~~~~~c~~YwP~~~~~~~ 188 (343)
.++-|+.+|++....+.+...-+|-+|=.. ..+.=-.-+..+.+..||.|+...|-.+ .+ +|.
T Consensus 23 ~~~P~~i~~l~~s~~~~~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~-l~----Vp~------ 91 (168)
T PF05706_consen 23 EQTPIQIDWLPLSPVNCSGFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELAR-LG----VPD------ 91 (168)
T ss_dssp BTS----EEEE-GGGT-SSEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHH-TT-----TT------
T ss_pred cCCceeeeeecccccCCcceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHH-cC----Ccc------
Confidence 346788888886433333355667777421 2222234566789999999988777533 00 111
Q ss_pred ecCceEEEEEEEeeeccEEEEEEEEeecCCCCCCeEEEEEecCccCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCC
Q 019277 189 FGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSA 268 (343)
Q Consensus 189 ~g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~ 268 (343)
++. .. ... -+..+|| -+||.++| +...+..++..+...-.+...|+|||..
T Consensus 92 L~~---------~~-------------~~~-----Gi~~~h~-PI~D~~aP-d~~~~~~i~~eL~~~L~~g~~V~vHC~G 142 (168)
T PF05706_consen 92 LGE---------AA-------------QAR-----GIAWHHL-PIPDGSAP-DFAAAWQILEELAARLENGRKVLVHCRG 142 (168)
T ss_dssp HHH---------HH-------------HHT-----T-EEEE-----TTS----HHHHHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHH---------HH-------------HHc-----CCEEEec-CccCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 000 00 000 1222333 67899999 4555555555544332223689999999
Q ss_pred CCchhHHHHHHH
Q 019277 269 GIGRTGAYCTIH 280 (343)
Q Consensus 269 GvGRtGtf~ai~ 280 (343)
|.||||+++|..
T Consensus 143 GlGRtGlvAAcL 154 (168)
T PF05706_consen 143 GLGRTGLVAACL 154 (168)
T ss_dssp SSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999999998753
No 31
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.99 E-value=8.1e-05 Score=61.24 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=68.0
Q ss_pred CCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCCHHH
Q 019277 237 GVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMEQ 316 (343)
Q Consensus 237 ~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt~~Q 316 (343)
|.| +.+.+..-++.+.+...-...+-|||.||=|||.|.+++..+.. . .......+..+|+.|+...-.+.|
T Consensus 88 ~~P-s~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~----~---~wtpe~A~~~vr~iRp~VlL~~~Q 159 (183)
T KOG1719|consen 88 GAP-SLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQH----K---NWTPEAAVEHVRKIRPRVLLRPAQ 159 (183)
T ss_pred CCC-CHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhh----c---CCCHHHHHHHHHhcCcceeecHHH
Confidence 566 55555555555554444335688999999999999987654432 2 378889999999999999889999
Q ss_pred HHHHHHHHHHHHHHHhcccCccccc
Q 019277 317 YIFCHQAIVDELEDLISGFNSERTS 341 (343)
Q Consensus 317 Y~f~~~~l~~~l~~~~~~~~~~~~~ 341 (343)
.. ++.+|.+.+....++.-++
T Consensus 160 w~----~l~ef~~~~~~~~ss~gt~ 180 (183)
T KOG1719|consen 160 WD----VLKEFYKQIVANASSDGTF 180 (183)
T ss_pred HH----HHHHHHHHHHhcccccccc
Confidence 85 6888888887776655443
No 32
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.51 E-value=0.0002 Score=60.00 Aligned_cols=50 Identities=26% Similarity=0.479 Sum_probs=33.4
Q ss_pred ccCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHH
Q 019277 232 EWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTV 283 (343)
Q Consensus 232 ~Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~ 283 (343)
..+|+..| +...+-+|+..++.. +....+++||.+|.|||.+|.++..++
T Consensus 99 pitd~~~P-~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 99 PITDHQAP-DPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp EE-TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred eCCCcCCC-CHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 44677767 566666777777777 334789999999999999998877654
No 33
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=97.27 E-value=0.0026 Score=52.39 Aligned_cols=82 Identities=24% Similarity=0.345 Sum_probs=55.4
Q ss_pred EEecCccCCCC-CCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 019277 227 HIQYPEWPDHG-VPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRS 305 (343)
Q Consensus 227 h~~y~~Wpd~~-vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~ 305 (343)
||.=..-|+.| .-.....+..++..++.+... .|++|||.+|+|||-....+..+. ... ..|-.++.+.||.
T Consensus 61 ~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~aGISRStA~A~i~a~a---la~---~~de~ela~~Lra 133 (172)
T COG5350 61 HFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYAGISRSTAAALIAALA---LAP---DMDETELAERLRA 133 (172)
T ss_pred eeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeeccccccchHHHHHHHHh---hcc---ccChHHHHHHHHh
Confidence 34444445555 334666777777777777654 899999999999997654332211 112 3677888999999
Q ss_pred hcccCCCCHH
Q 019277 306 QRIGMVQTME 315 (343)
Q Consensus 306 qR~~~Vqt~~ 315 (343)
-+|.+-.+.-
T Consensus 134 ~sp~atPN~R 143 (172)
T COG5350 134 LSPYATPNPR 143 (172)
T ss_pred cCcccCCChh
Confidence 9998876654
No 34
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.11 E-value=0.0021 Score=53.86 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=50.0
Q ss_pred EEEEEecCccCCCCCCCC-----hHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHH
Q 019277 224 SVLHIQYPEWPDHGVPRD-----TLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLAN 298 (343)
Q Consensus 224 ~v~h~~y~~Wpd~~vP~~-----~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~ 298 (343)
....++|..-|-.+.|.. .+.+.+.+..+.... |-++|||-|||+||+++|.+..+- .. ..++.+
T Consensus 57 ~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~g---G~TLvHC~AGVSRSAsLClAYLmK----~~---~msLre 126 (198)
T KOG1718|consen 57 SLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRG---GKTLVHCVAGVSRSASLCLAYLMK----YH---CMSLRE 126 (198)
T ss_pred cCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcC---CcEEEEEccccchhHHHHHHHHHH----Hc---cchHHH
Confidence 344455555444444432 244555666554433 789999999999999999765432 23 367777
Q ss_pred HHHHHHHhcccCCCC
Q 019277 299 TVKVFRSQRIGMVQT 313 (343)
Q Consensus 299 ~v~~lR~qR~~~Vqt 313 (343)
.-..+...||-.=.+
T Consensus 127 Ay~~vKa~RpiIRPN 141 (198)
T KOG1718|consen 127 AYHWVKARRPIIRPN 141 (198)
T ss_pred HHHHHHhhCceeCCC
Confidence 777777777644333
No 35
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=96.93 E-value=0.00073 Score=65.85 Aligned_cols=85 Identities=24% Similarity=0.237 Sum_probs=55.8
Q ss_pred CccCCCCCCCChHHHHHHHHHHHcCCC--CCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhc-
Q 019277 231 PEWPDHGVPRDTLAVREILKRIYNLPP--NFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQR- 307 (343)
Q Consensus 231 ~~Wpd~~vP~~~~~~~~~~~~~~~~~~--~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR- 307 (343)
.+|+|+.+| +...+..+.+.+..+-. ...=++|||.+|-||||+++....+...+.. .-.+.+..+-..|
T Consensus 78 ~~~~Dh~~P-~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~------ta~eald~~~~kR~ 150 (434)
T KOG2283|consen 78 FGFDDHNPP-PLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISA------TAEEALDYFNEKRF 150 (434)
T ss_pred cCCCCCCCC-cHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcC------CHHHHHHHHhhhhc
Confidence 499999999 56666666665544322 1245789999999999998776665554433 2345555555555
Q ss_pred --c--cCCCCHHHHHHHHH
Q 019277 308 --I--GMVQTMEQYIFCHQ 322 (343)
Q Consensus 308 --~--~~Vqt~~QY~f~~~ 322 (343)
. +-+-.+.|-.|++-
T Consensus 151 ~~~~~~~~~~PSq~RYv~Y 169 (434)
T KOG2283|consen 151 DEGKSKGVTIPSQRRYVGY 169 (434)
T ss_pred cccccCCccCchhhHHHHH
Confidence 3 34667777777643
No 36
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.84 E-value=0.011 Score=48.52 Aligned_cols=56 Identities=14% Similarity=0.231 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcc
Q 019277 241 DTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRI 308 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR~ 308 (343)
+...+..|.+.+... .+||++||.+|- |||++.++.... .+ ++..++++..|..-.
T Consensus 71 ~~~~v~~f~~~~~~~---~~pvL~HC~sG~-Rt~~l~al~~~~-----~g---~~~~~i~~~~~~~G~ 126 (135)
T TIGR01244 71 TPDDVETFRAAIGAA---EGPVLAYCRSGT-RSSLLWGFRQAA-----EG---VPVEEIVRRAQAAGY 126 (135)
T ss_pred CHHHHHHHHHHHHhC---CCCEEEEcCCCh-HHHHHHHHHHHH-----cC---CCHHHHHHHHHHcCC
Confidence 334444444444322 389999999999 999998765432 12 678888888776544
No 37
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=96.84 E-value=0.0023 Score=54.37 Aligned_cols=37 Identities=11% Similarity=0.032 Sum_probs=23.0
Q ss_pred eEeeecCCCCCCHHHHHHHHHHcCCCeEEEecccccCc
Q 019277 134 QFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNY 171 (343)
Q Consensus 134 ~~I~tQ~Pl~~T~~dFW~MV~e~~~~~IVmL~~~~E~~ 171 (343)
.++=+-.|..-|.+|.+.+. +.+++.||=|-...|..
T Consensus 20 ~lyRS~~l~~lt~~d~~~L~-~lgI~tIiDLRs~~E~~ 56 (164)
T PF13350_consen 20 RLYRSGNLSNLTEADLERLR-ELGIRTIIDLRSPTERE 56 (164)
T ss_dssp SEEEES--TT--HHHHHHHH-HTT--EEEE-S-HHHHH
T ss_pred cEEecCCcCcCCHHHHHHHH-hCCCCEEEECCCccccc
Confidence 45556677778999998888 99999999998877743
No 38
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.79 E-value=0.0053 Score=57.01 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCC
Q 019277 244 AVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQT 313 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt 313 (343)
...+++..+... .+-|+|||.+|++||.+++.++++.. . ..++.+..+.++..|+....+
T Consensus 143 ~~~~fI~~a~~~---~~~vlVHC~~GvSRSat~viAYlM~~----~---~~~l~~A~~~vk~~R~~i~PN 202 (285)
T KOG1716|consen 143 EAISFIEKAREK---GGKVLVHCQAGVSRSATLVIAYLMKY----E---GLSLEDAYELVKSRRPIISPN 202 (285)
T ss_pred HHHHHHHHHHhC---CCeEEEEcCCccchhHHHHHHHHHHH----c---CCCHHHHHHHHHHhCCccCCC
Confidence 445566665544 36799999999999999987665543 2 378999999999999987665
No 39
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.60 E-value=0.01 Score=53.30 Aligned_cols=67 Identities=19% Similarity=0.322 Sum_probs=43.3
Q ss_pred HHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Q 019277 249 LKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQTMEQYIFCHQAIV 325 (343)
Q Consensus 249 ~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt~~QY~f~~~~l~ 325 (343)
+..+...+....-++|||-+||.||-|.++.+ +|+.+ .+++-+....+.+.+.+.-.+ |-|..+.+-
T Consensus 241 IsfIdeArsk~cgvLVHClaGISRSvTvtvaY-LMqkl------~lslndAyd~Vk~kksnisPN---FnFMgQLld 307 (343)
T KOG1717|consen 241 ISFIDEARSKNCGVLVHCLAGISRSVTVTVAY-LMQKL------NLSLNDAYDFVKHKKSNISPN---FNFMGQLLD 307 (343)
T ss_pred HHHHHHhhccCCcEEEeeeccccchhHHHHHH-HHHHh------ccchhhHHHHHHHhccCCCCC---cchhHHHHH
Confidence 33343344444569999999999999998755 44443 256666666666666666555 556666543
No 40
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=95.64 E-value=0.025 Score=44.70 Aligned_cols=38 Identities=24% Similarity=0.525 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHH
Q 019277 241 DTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNT 282 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~ 282 (343)
+...+..|.+.+.... +||++||..|. |++++.++.-.
T Consensus 71 ~~~~v~~f~~~l~~~~---~Pvl~hC~sG~-Ra~~l~~l~~~ 108 (110)
T PF04273_consen 71 TEEDVEAFADALESLP---KPVLAHCRSGT-RASALWALAQA 108 (110)
T ss_dssp -HHHHHHHHHHHHTTT---TSEEEE-SCSH-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC---CCEEEECCCCh-hHHHHHHHHhh
Confidence 4566666666666543 79999999995 99999887543
No 41
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=95.03 E-value=0.34 Score=43.10 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccC
Q 019277 242 TLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGM 310 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR~~~ 310 (343)
...+...++.+.... ..|++|||.-|-.|||++++ |++.+. ...+..++...++--...
T Consensus 133 ~~~i~~~l~~lld~~--N~P~Lihc~rGkhRtg~lVg---clRklq-----~W~lssil~Ey~~fa~sk 191 (249)
T KOG1572|consen 133 DHSIRKALKVLLDKR--NYPILIHCKRGKHRTGCLVG---CLRKLQ-----NWSLSSILDEYLRFAGSK 191 (249)
T ss_pred HHHHHHHHHHHhccc--CCceEEecCCCCcchhhhHH---HHHHHh-----ccchhHHHHHHHHhccch
Confidence 344555555443332 37999999999999999998 444443 266667776665544333
No 42
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=94.85 E-value=0.043 Score=49.93 Aligned_cols=39 Identities=28% Similarity=0.579 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHHH
Q 019277 243 LAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTV 283 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~ 283 (343)
+.+..++..+.... .+|+++||.+|.-|||..+|+...+
T Consensus 122 e~~~~~~~l~~~~e--~~PvL~HC~~GkdRTGl~~al~r~~ 160 (249)
T COG2365 122 ERLVELLQLLADAE--NGPVLIHCTAGKDRTGLVAALYRKL 160 (249)
T ss_pred HHHHHHHHHHhhcc--cCCEEEecCCCCcchHHHHHHHHHH
Confidence 34444444443332 3899999999999999999876543
No 43
>PLN02727 NAD kinase
Probab=94.74 E-value=0.071 Score=56.15 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=31.2
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHHHHHHH
Q 019277 241 DTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNT 282 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ai~~~ 282 (343)
+.+.+.++.+.++... ..||++||..|.+|||++.|++..
T Consensus 325 t~EqVe~fa~~l~~sl--pkPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 325 SAEQVEKFASLVSDSS--KKPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred CHHHHHHHHHHHHhhc--CCCEEEECCCCCchHHHHHHHHHH
Confidence 6677777777763322 279999999999999999997765
No 44
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.23 E-value=0.11 Score=51.84 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=25.0
Q ss_pred HcCCCCCCCEEEEcCCCCchhHHHHHHHHHH
Q 019277 253 YNLPPNFGPIVVHCSAGIGRTGAYCTIHNTV 283 (343)
Q Consensus 253 ~~~~~~~~PivVHCs~GvGRtGtf~ai~~~~ 283 (343)
.+......||+||||+|=.||.-+.++..++
T Consensus 368 ~kVe~~~~sVlVHCSDGWDRT~QlvsLA~Ll 398 (717)
T KOG4471|consen 368 DKVESESRSVLVHCSDGWDRTAQLVSLAMLL 398 (717)
T ss_pred HHHhcCCceEEEEcCCCccchHHHHHHHHHH
Confidence 3444455799999999999999998887765
No 45
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=83.38 E-value=2.2 Score=40.95 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=20.0
Q ss_pred CCEEEEcCCCCchhHHHHHHHHHH
Q 019277 260 GPIVVHCSAGIGRTGAYCTIHNTV 283 (343)
Q Consensus 260 ~PivVHCs~GvGRtGtf~ai~~~~ 283 (343)
.+|+|||++|-.||..+++|..++
T Consensus 232 ~~Vlvh~~dGwDrt~q~~sL~ql~ 255 (353)
T PF06602_consen 232 SSVLVHCSDGWDRTSQLSSLAQLL 255 (353)
T ss_dssp -EEEEECTTSSSHHHHHHHHHHHH
T ss_pred ceEEEEcCCCCcccHHHHHHHHHH
Confidence 689999999999999988766554
No 46
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=76.07 E-value=3.4 Score=41.67 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=20.6
Q ss_pred CCEEEEcCCCCchhHHHHHHHHHH
Q 019277 260 GPIVVHCSAGIGRTGAYCTIHNTV 283 (343)
Q Consensus 260 ~PivVHCs~GvGRtGtf~ai~~~~ 283 (343)
.+||||||+|-.||...+.+..++
T Consensus 345 ~sVlvhcsdGwDrT~qV~SLaQll 368 (573)
T KOG1089|consen 345 ASVLVHCSDGWDRTCQVSSLAQLL 368 (573)
T ss_pred CeEEEEccCCcchhHHHHHHHHHH
Confidence 699999999999999988776544
No 47
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.49 E-value=5.4 Score=31.85 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHH
Q 019277 241 DTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAY 276 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf 276 (343)
+...+..|.+.+.... +||+.||..|. |+-++
T Consensus 72 T~~dV~~f~~Al~eae---gPVlayCrsGt-Rs~~l 103 (130)
T COG3453 72 TEADVEAFQRALDEAE---GPVLAYCRSGT-RSLNL 103 (130)
T ss_pred CHHHHHHHHHHHHHhC---CCEEeeecCCc-hHHHH
Confidence 4555666655555443 89999998884 55443
No 48
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=74.44 E-value=3.3 Score=39.92 Aligned_cols=83 Identities=22% Similarity=0.257 Sum_probs=53.7
Q ss_pred ccCCCC-CCC--ChHHHHHHHHHHHc-CCCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhc
Q 019277 232 EWPDHG-VPR--DTLAVREILKRIYN-LPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQR 307 (343)
Q Consensus 232 ~Wpd~~-vP~--~~~~~~~~~~~~~~-~~~~~~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR 307 (343)
.-+.++ +|. ....+..+++.... ......=|.|||..|..|||-+++...+.. + ...+.++++.+-.-|
T Consensus 93 ~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~----~---~~s~~~aik~f~~~r 165 (393)
T KOG2386|consen 93 NCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADV----G---GYSSSEAIKRFADAR 165 (393)
T ss_pred ccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeec----c---CccHHHHHHHHHHhC
Confidence 334445 553 23455555554433 222335688999999999998875333221 2 378899999999999
Q ss_pred ccCCCCHHHHHHHH
Q 019277 308 IGMVQTMEQYIFCH 321 (343)
Q Consensus 308 ~~~Vqt~~QY~f~~ 321 (343)
+..+.-.+-+.=+|
T Consensus 166 ~~gi~k~dyi~~L~ 179 (393)
T KOG2386|consen 166 PPGIEKQDYIDALY 179 (393)
T ss_pred CCccCchHHHHHHh
Confidence 99887766554444
No 49
>PLN02160 thiosulfate sulfurtransferase
Probab=50.77 E-value=26 Score=28.44 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=13.6
Q ss_pred CCCEEEEcCCCCchhHHH
Q 019277 259 FGPIVVHCSAGIGRTGAY 276 (343)
Q Consensus 259 ~~PivVHCs~GvGRtGtf 276 (343)
..||+|+|..| +||..-
T Consensus 81 ~~~IivyC~sG-~RS~~A 97 (136)
T PLN02160 81 ADDILVGCQSG-ARSLKA 97 (136)
T ss_pred CCcEEEECCCc-HHHHHH
Confidence 37999999988 677754
No 50
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=45.64 E-value=21 Score=26.92 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=14.0
Q ss_pred CCCEEEEcCCCCchhHHHH
Q 019277 259 FGPIVVHCSAGIGRTGAYC 277 (343)
Q Consensus 259 ~~PivVHCs~GvGRtGtf~ 277 (343)
..||||+|..| +||...+
T Consensus 61 ~~~ivvyC~~G-~rs~~a~ 78 (101)
T cd01518 61 GKKVLMYCTGG-IRCEKAS 78 (101)
T ss_pred CCEEEEECCCc-hhHHHHH
Confidence 37999999887 7887643
No 51
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=44.66 E-value=24 Score=32.50 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=25.3
Q ss_pred EEecCccCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHHH
Q 019277 227 HIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYC 277 (343)
Q Consensus 227 h~~y~~Wpd~~vP~~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf~ 277 (343)
|+.+..+.+.+...+...+..++... .... ..|||++|..|+--+.++.
T Consensus 201 ~i~~~~~~~~~~~~~~~~l~~~~~~~-g~~~-~~~ii~yC~~G~~A~~~~~ 249 (281)
T PRK11493 201 NVPWTELVREGELKTTDELDAIFFGR-GVSF-DRPIIASCGSGVTAAVVVL 249 (281)
T ss_pred CCCHHHhcCCCCcCCHHHHHHHHHhc-CCCC-CCCEEEECCcHHHHHHHHH
Confidence 44444444433333455555554432 1222 3699999998874444433
No 52
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=43.10 E-value=33 Score=21.74 Aligned_cols=24 Identities=17% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEecCccCCCCCCCChHHHHHHHH
Q 019277 227 HIQYPEWPDHGVPRDTLAVREILK 250 (343)
Q Consensus 227 h~~y~~Wpd~~vP~~~~~~~~~~~ 250 (343)
+|++.+||--|+|.-.+++++.+.
T Consensus 2 ~~~~AG~~~~G~~ql~ESLLdrIt 25 (45)
T PF02061_consen 2 QYAIAGWPRMGCPQLSESLLDRIT 25 (45)
T ss_pred eeeecCccccCCchhhHHHHHHHH
Confidence 578899999999977777776553
No 53
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=41.04 E-value=25 Score=26.35 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=13.0
Q ss_pred CCCEEEEcCCCCchhHHH
Q 019277 259 FGPIVVHCSAGIGRTGAY 276 (343)
Q Consensus 259 ~~PivVHCs~GvGRtGtf 276 (343)
..||+|+|..| +||...
T Consensus 61 ~~~ivv~C~~G-~rs~~a 77 (100)
T cd01523 61 DQEVTVICAKE-GSSQFV 77 (100)
T ss_pred CCeEEEEcCCC-CcHHHH
Confidence 37999999988 477543
No 54
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=38.13 E-value=58 Score=24.84 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=12.3
Q ss_pred CCCEEEEcCCCCchhHH
Q 019277 259 FGPIVVHCSAGIGRTGA 275 (343)
Q Consensus 259 ~~PivVHCs~GvGRtGt 275 (343)
..||+|+|..|. ||..
T Consensus 66 ~~~ivv~C~~G~-rs~~ 81 (109)
T cd01533 66 RTPIVVNCAGRT-RSII 81 (109)
T ss_pred CCeEEEECCCCc-hHHH
Confidence 369999999885 6643
No 55
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=37.03 E-value=82 Score=24.45 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCCCCchhHHH
Q 019277 241 DTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAY 276 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGtf 276 (343)
+...+.+++.... . ....||||+|..| |+.+..
T Consensus 63 ~~~~~~~~~~~~~-~-~~~~~vv~~c~~g-~~~a~~ 95 (122)
T cd01448 63 SPEEFAELLGSLG-I-SNDDTVVVYDDGG-GFFAAR 95 (122)
T ss_pred CHHHHHHHHHHcC-C-CCCCEEEEECCCC-CccHHH
Confidence 4556666654331 2 2237999999998 444443
No 56
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=35.46 E-value=37 Score=25.65 Aligned_cols=16 Identities=50% Similarity=0.789 Sum_probs=12.9
Q ss_pred CCCEEEEcCCCCchhHH
Q 019277 259 FGPIVVHCSAGIGRTGA 275 (343)
Q Consensus 259 ~~PivVHCs~GvGRtGt 275 (343)
..|++|+|..| .||+.
T Consensus 61 ~~~ivv~C~~G-~rS~~ 76 (110)
T COG0607 61 DDPIVVYCASG-VRSAA 76 (110)
T ss_pred CCeEEEEeCCC-CChHH
Confidence 47999999999 47655
No 57
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=35.43 E-value=82 Score=34.24 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=49.3
Q ss_pred CCEEEEcCCCCchhHHHHHHHHHHHHHHcCC-------CCCCCHHHHHHHHHHhcccCCCCHH--HHHHHHHHH
Q 019277 260 GPIVVHCSAGIGRTGAYCTIHNTVQRILVGD-------MSALDLANTVKVFRSQRIGMVQTME--QYIFCHQAI 324 (343)
Q Consensus 260 ~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~-------~~~vdv~~~v~~lR~qR~~~Vqt~~--QY~f~~~~l 324 (343)
+-.|=.|.||..-+|++=|+|..+..-+.+- .+..+|.-+..-+|+.|...|.+.. ||.-+|-++
T Consensus 852 ~y~VgfCGDGANDCgALKaAdvGISLSeaEASvAApFTSk~~~I~cVp~vIrEGRaALVTSf~~FkYMalYs~i 925 (1140)
T KOG0208|consen 852 GYKVGFCGDGANDCGALKAADVGISLSEAEASVAAPFTSKTPSISCVPDVIREGRAALVTSFACFKYMALYSAI 925 (1140)
T ss_pred CcEEEecCCCcchhhhhhhcccCcchhhhhHhhcCccccCCCchhhHhHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 6789999999999999999998875443321 1145788888889999999999855 555556554
No 58
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=32.51 E-value=69 Score=24.04 Aligned_cols=16 Identities=31% Similarity=0.602 Sum_probs=12.0
Q ss_pred CCCEEEEcCCCCchhHH
Q 019277 259 FGPIVVHCSAGIGRTGA 275 (343)
Q Consensus 259 ~~PivVHCs~GvGRtGt 275 (343)
..||||+|..|. |+..
T Consensus 66 ~~~ivv~c~~g~-~s~~ 81 (106)
T cd01519 66 DKELIFYCKAGV-RSKA 81 (106)
T ss_pred CCeEEEECCCcH-HHHH
Confidence 479999999874 5544
No 59
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=32.37 E-value=44 Score=30.07 Aligned_cols=18 Identities=44% Similarity=0.794 Sum_probs=11.7
Q ss_pred CCCCEEEEcCCCCchhHHH
Q 019277 258 NFGPIVVHCSAGIGRTGAY 276 (343)
Q Consensus 258 ~~~PivVHCs~GvGRtGtf 276 (343)
..+-||+||| |.+-+|.|
T Consensus 90 rpg~iv~HcS-ga~~~~il 107 (289)
T COG5495 90 RPGTIVAHCS-GANGSGIL 107 (289)
T ss_pred CCCeEEEEcc-CCCchhhh
Confidence 3478999999 44444443
No 60
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=29.42 E-value=5.3e+02 Score=25.39 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=52.7
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCC--CCchhHHHHHHHHHHHHHHc------CCCCCCCHHHHHHHHHHhcccCCC
Q 019277 241 DTLAVREILKRIYNLPPNFGPIVVHCSA--GIGRTGAYCTIHNTVQRILV------GDMSALDLANTVKVFRSQRIGMVQ 312 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~PivVHCs~--GvGRtGtf~ai~~~~~~l~~------~~~~~vdv~~~v~~lR~qR~~~Vq 312 (343)
++...-++++.+.+.-. -||.+||.+ |+.-..-+.|+....+.+.. ++.+......++..||..-.--=-
T Consensus 183 tP~~ayelVk~iK~~~~--~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAisp~S~gtsqP~tEtmv~aL~gt~yDtgl 260 (472)
T COG5016 183 TPYEAYELVKAIKKELP--VPVELHTHATSGMAEMTYLKAVEAGVDGIDTAISPLSGGTSQPATETMVAALRGTGYDTGL 260 (472)
T ss_pred ChHHHHHHHHHHHHhcC--CeeEEecccccchHHHHHHHHHHhCcchhhhhhccccCCCCCCcHHHHHHHhcCCCCCccc
Confidence 44555566666655443 589998875 44444445565555555443 334567788888888875444333
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 019277 313 TMEQYIFCHQAIVDELEDL 331 (343)
Q Consensus 313 t~~QY~f~~~~l~~~l~~~ 331 (343)
..+.+..++..+.+..++.
T Consensus 261 d~~~l~~~~~yf~~vrkkY 279 (472)
T COG5016 261 DLELLEEIAEYFREVRKKY 279 (472)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 5666666666555444444
No 61
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=29.11 E-value=86 Score=25.26 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCC-CCCCCEEEEcCCCCc
Q 019277 244 AVREILKRIYNLP-PNFGPIVVHCSAGIG 271 (343)
Q Consensus 244 ~~~~~~~~~~~~~-~~~~PivVHCs~GvG 271 (343)
.+-.+...+.... ...+.+|||||...+
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-SS--
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCCCCh
Confidence 4455566665441 123789999995443
No 62
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=29.00 E-value=1.9e+02 Score=26.44 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCC--CCchhHHHHHHHHHHHHHHc------CCCCCCCHHHHHHHHHHhcccCCC
Q 019277 241 DTLAVREILKRIYNLPPNFGPIVVHCSA--GIGRTGAYCTIHNTVQRILV------GDMSALDLANTVKVFRSQRIGMVQ 312 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~PivVHCs~--GvGRtGtf~ai~~~~~~l~~------~~~~~vdv~~~v~~lR~qR~~~Vq 312 (343)
.+..+.+++..+++.-+ .|+-+||.+ |.+-+-++.|++...+.+.. +..+..++.+++..|+..-...=-
T Consensus 176 ~P~~v~~lv~~l~~~~~--~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~g~~~~~ 253 (275)
T cd07937 176 TPYAAYELVKALKKEVG--LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGTGRDTGL 253 (275)
T ss_pred CHHHHHHHHHHHHHhCC--CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHccCCCCCC
Confidence 45666677776665433 588898875 55555566776665544432 223467889999888865111111
Q ss_pred CHHHHHHHHHHHHHH
Q 019277 313 TMEQYIFCHQAIVDE 327 (343)
Q Consensus 313 t~~QY~f~~~~l~~~ 327 (343)
+.+++.-+.+.+.+.
T Consensus 254 dl~~l~~~~~~v~~~ 268 (275)
T cd07937 254 DLEKLEEISEYFEEV 268 (275)
T ss_pred CHHHHHHHHHHHHHH
Confidence 345555555544443
No 63
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=27.88 E-value=94 Score=28.88 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=15.1
Q ss_pred CCEEEEcCCCCchhHHHHHH
Q 019277 260 GPIVVHCSAGIGRTGAYCTI 279 (343)
Q Consensus 260 ~PivVHCs~GvGRtGtf~ai 279 (343)
-|+|.|...|++..-.=-++
T Consensus 207 vPLVlHGgSG~~~e~~~~ai 226 (288)
T TIGR00167 207 LPLVLHGGSGIPDEEIKKAI 226 (288)
T ss_pred CCEEEeCCCCCCHHHHHHHH
Confidence 69999999999876543333
No 64
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=27.07 E-value=2.3e+02 Score=21.47 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcccCCCC--HHHHHHHHHHHHHHHHHH
Q 019277 273 TGAYCTIHNTVQRILVGDMSALDLANTVKVFRSQRIGMVQT--MEQYIFCHQAIVDELEDL 331 (343)
Q Consensus 273 tGtf~ai~~~~~~l~~~~~~~vdv~~~v~~lR~qR~~~Vqt--~~QY~f~~~~l~~~l~~~ 331 (343)
.|..-|+..++......+ +++.++++.|+..|.+.-.+ ..+..-|-++|...|++.
T Consensus 37 ~~~~~ai~rliS~~Lr~G---~~~~~ii~~L~gi~~~~~~~~~~~~~~S~~D~Ia~~L~~~ 94 (95)
T PF12637_consen 37 SGNLEAIARLISLALRSG---VPPEEIIDQLRGIRCGPSGTVGGSRVTSCPDAIAKALEEH 94 (95)
T ss_pred hHHHHHHHHHHHHHHHcC---CCHHHHHHHhcCCCCCCCCccCCCccCcHHHHHHHHHHHh
Confidence 777777777777666654 88999999999887653322 244444666666666654
No 65
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=27.03 E-value=1.1e+02 Score=25.54 Aligned_cols=18 Identities=22% Similarity=0.119 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCCchhHHH
Q 019277 259 FGPIVVHCSAGIGRTGAY 276 (343)
Q Consensus 259 ~~PivVHCs~GvGRtGtf 276 (343)
..||||.|..|..||...
T Consensus 116 d~~IVvYC~~G~~~S~~a 133 (162)
T TIGR03865 116 DRPLVFYCLADCWMSWNA 133 (162)
T ss_pred CCEEEEEECCCCHHHHHH
Confidence 479999999988788763
No 66
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=26.58 E-value=1.2e+02 Score=28.12 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=35.4
Q ss_pred CCEEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCHHHH-----HHHHHHh---cccCCCCHHHHHHHHHHHHHHHHHH
Q 019277 260 GPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANT-----VKVFRSQ---RIGMVQTMEQYIFCHQAIVDELEDL 331 (343)
Q Consensus 260 ~PivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv~~~-----v~~lR~q---R~~~Vqt~~QY~f~~~~l~~~l~~~ 331 (343)
-|+|.|...|++..-.=-++...+ ..+||..- .+.+|+. .+.-..-..-+.-...++.+.++..
T Consensus 204 vPLVLHGgSG~~~e~~~~ai~~GI--------~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~ 275 (286)
T PRK08610 204 LPLVLHGGTGIPTKDIQKAIPFGT--------AKINVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGK 275 (286)
T ss_pred CCEEEeCCCCCCHHHHHHHHHCCC--------eEEEeccHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 699999999998765433333333 23443322 2223331 2222333344445556666666666
Q ss_pred hcccC
Q 019277 332 ISGFN 336 (343)
Q Consensus 332 ~~~~~ 336 (343)
+.-+.
T Consensus 276 i~~fg 280 (286)
T PRK08610 276 IKEFG 280 (286)
T ss_pred HHHhC
Confidence 55554
No 67
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.55 E-value=12 Score=37.53 Aligned_cols=29 Identities=31% Similarity=0.545 Sum_probs=24.5
Q ss_pred eeEeeecCCCCCCHHHHHHHHHHcCCCeE
Q 019277 133 SQFIATQGPLPHTYEDFWEMVIQYHCPVI 161 (343)
Q Consensus 133 ~~~I~tQ~Pl~~T~~dFW~MV~e~~~~~I 161 (343)
++||++|||..+.+.-=|.-||--|-.+|
T Consensus 475 kqfIl~QG~Sk~v~~meWdkiWAfNKKvI 503 (712)
T KOG1147|consen 475 KQFILAQGPSKNVVTMEWDKIWAFNKKVI 503 (712)
T ss_pred HHHHHHhCCccceeeeehHhhhhhccccc
Confidence 47999999999999999999998764433
No 68
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=26.18 E-value=2e+02 Score=22.26 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=27.3
Q ss_pred ecCceEEEEEEEeeeccEEEEEEEEeecCCCCCCeEEEEEecCcc
Q 019277 189 FGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233 (343)
Q Consensus 189 ~g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~~~v~h~~y~~W 233 (343)
.+++.+++..--.......++.|+|++.+.. .|.+..+-|..|
T Consensus 47 ~~gi~~~~~v~V~~~~~vEi~~l~l~N~~~~--~r~L~vtsy~E~ 89 (110)
T PF06165_consen 47 DGGIETELTVFVPPDDPVEIRRLRLTNTSNR--PRRLSVTSYAEW 89 (110)
T ss_dssp ETTEEEEEEEE--TTSSEEEEEEEEEE-SSS---EEEEEEEEEEE
T ss_pred eCCEEEEEEEEEcCCCCEEEEEEEEEECcCC--cEEEEEEEEEEE
Confidence 3445554433333457789999999986543 468888888887
No 69
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=26.08 E-value=67 Score=25.78 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEcCCCCchhHH
Q 019277 244 AVREILKRIYNLPPNFGPIVVHCSAGIGRTGA 275 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~PivVHCs~GvGRtGt 275 (343)
.+.++.+.+.+......||+|..-.|.|++-+
T Consensus 6 ~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 6 AMRRLRRQLERLAKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HHHHHHHHHHHHHCSSS-EEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHH
Confidence 34455555554444458999999999999854
No 70
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=22.93 E-value=97 Score=25.24 Aligned_cols=28 Identities=29% Similarity=0.422 Sum_probs=18.0
Q ss_pred HHHHHHHcCCCC-CCCEEEEcCCCCchhHH
Q 019277 247 EILKRIYNLPPN-FGPIVVHCSAGIGRTGA 275 (343)
Q Consensus 247 ~~~~~~~~~~~~-~~PivVHCs~GvGRtGt 275 (343)
+|++.+....+. ...||++|..| .|+..
T Consensus 76 eF~kqvg~~kp~~d~eiIf~C~SG-~Rs~~ 104 (136)
T KOG1530|consen 76 EFLKQVGSSKPPHDKEIIFGCASG-VRSLK 104 (136)
T ss_pred HHHHHhcccCCCCCCcEEEEeccC-cchhH
Confidence 455555443333 35899999999 47655
No 71
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=22.79 E-value=1.4e+02 Score=23.26 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=12.6
Q ss_pred CCCEEEEcCCCCchhHHH
Q 019277 259 FGPIVVHCSAGIGRTGAY 276 (343)
Q Consensus 259 ~~PivVHCs~GvGRtGtf 276 (343)
..||||+|..| .|+...
T Consensus 64 ~~~ivv~C~~G-~rs~~a 80 (117)
T cd01522 64 DRPVLLLCRSG-NRSIAA 80 (117)
T ss_pred CCeEEEEcCCC-ccHHHH
Confidence 37899999888 466543
No 72
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=22.46 E-value=1.8e+02 Score=22.94 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=14.1
Q ss_pred CCCEEEEcCCCCchhHHHH
Q 019277 259 FGPIVVHCSAGIGRTGAYC 277 (343)
Q Consensus 259 ~~PivVHCs~GvGRtGtf~ 277 (343)
..||||.|..|..||...+
T Consensus 86 ~~~vvvyC~~~G~rs~~a~ 104 (128)
T cd01520 86 DPKLLIYCARGGMRSQSLA 104 (128)
T ss_pred CCeEEEEeCCCCccHHHHH
Confidence 3799999976556777554
No 73
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=22.45 E-value=1.2e+02 Score=22.15 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=11.8
Q ss_pred EEEEcCCCCchhHHH
Q 019277 262 IVVHCSAGIGRTGAY 276 (343)
Q Consensus 262 ivVHCs~GvGRtGtf 276 (343)
|++-|.+|+|-|-..
T Consensus 2 IlvvC~~Gi~TS~~~ 16 (90)
T PF02302_consen 2 ILVVCGSGIGTSLMV 16 (90)
T ss_dssp EEEEESSSSHHHHHH
T ss_pred EEEECCChHHHHHHH
Confidence 789999999866443
No 74
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=21.87 E-value=1.7e+02 Score=21.68 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=12.6
Q ss_pred CCCEEEEcCCCCchhHHH
Q 019277 259 FGPIVVHCSAGIGRTGAY 276 (343)
Q Consensus 259 ~~PivVHCs~GvGRtGtf 276 (343)
..|+++.|..| .|+...
T Consensus 58 ~~~vv~~c~~g-~rs~~~ 74 (101)
T cd01528 58 DKDIVVLCHHG-GRSMQV 74 (101)
T ss_pred CCeEEEEeCCC-chHHHH
Confidence 37999999987 466443
No 75
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=21.00 E-value=90 Score=23.06 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=12.4
Q ss_pred CCCEEEEcCCCCchhHHH
Q 019277 259 FGPIVVHCSAGIGRTGAY 276 (343)
Q Consensus 259 ~~PivVHCs~GvGRtGtf 276 (343)
..+|||+|..| +|+...
T Consensus 56 ~~~ivv~c~~g-~~s~~~ 72 (96)
T cd01529 56 ATRYVLTCDGS-LLARFA 72 (96)
T ss_pred CCCEEEEeCCh-HHHHHH
Confidence 37999999866 566553
No 76
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=20.78 E-value=1.7e+02 Score=27.19 Aligned_cols=23 Identities=13% Similarity=0.443 Sum_probs=17.6
Q ss_pred CCEEEEcCCCCchhHHHHHHHHH
Q 019277 260 GPIVVHCSAGIGRTGAYCTIHNT 282 (343)
Q Consensus 260 ~PivVHCs~GvGRtGtf~ai~~~ 282 (343)
.+||+.|..|+.-|=++.|+..+
T Consensus 235 ~~vI~yCgsG~~As~~~~al~~l 257 (285)
T COG2897 235 KEVIVYCGSGVRASVTWLALAEL 257 (285)
T ss_pred CCEEEEcCCchHHHHHHHHHHHh
Confidence 79999999998776666665544
No 77
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=20.47 E-value=1e+02 Score=23.02 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=13.5
Q ss_pred CCEEEEcCCCCchhHHHHH
Q 019277 260 GPIVVHCSAGIGRTGAYCT 278 (343)
Q Consensus 260 ~PivVHCs~GvGRtGtf~a 278 (343)
.||||+|..|. |++.++.
T Consensus 66 ~~vv~~c~~g~-~s~~~a~ 83 (105)
T cd01525 66 KIIVIVSHSHK-HAALFAA 83 (105)
T ss_pred CeEEEEeCCCc-cHHHHHH
Confidence 68999999885 6765543
No 78
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=20.12 E-value=2.1e+02 Score=24.29 Aligned_cols=35 Identities=9% Similarity=0.209 Sum_probs=23.4
Q ss_pred CC-EEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCCCH
Q 019277 260 GP-IVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDL 296 (343)
Q Consensus 260 ~P-ivVHCs~GvGRtGtf~ai~~~~~~l~~~~~~~vdv 296 (343)
|. |+.|+ |-++..+.-++..++..++..+-.-+.+
T Consensus 152 g~Iil~Hd--~~~~~~t~~~l~~~i~~l~~~Gy~~vtl 187 (191)
T TIGR02764 152 GDIILLHA--SDSAKQTVKALPTIIKKLKEKGYEFVTI 187 (191)
T ss_pred CCEEEEeC--CCCcHhHHHHHHHHHHHHHHCCCEEEEH
Confidence 44 67898 4467777778888888887765333333
No 79
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=20.02 E-value=1e+02 Score=22.67 Aligned_cols=14 Identities=43% Similarity=0.904 Sum_probs=11.3
Q ss_pred CEEEEcCCCCchhH
Q 019277 261 PIVVHCSAGIGRTG 274 (343)
Q Consensus 261 PivVHCs~GvGRtG 274 (343)
-|++.|.+|.|-|-
T Consensus 2 kilvvCg~G~gtS~ 15 (87)
T cd05567 2 KIVFACDAGMGSSA 15 (87)
T ss_pred EEEEECCCCccHHH
Confidence 38999999998643
No 80
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=20.01 E-value=2.9e+02 Score=19.74 Aligned_cols=35 Identities=23% Similarity=0.437 Sum_probs=26.3
Q ss_pred CCCCCChhhHhHHHHHHHHHHHHhhcchHHHHHHH
Q 019277 27 PRISLTADQYNHCSEALSFFKEKLQNKSREISQEF 61 (343)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ef 61 (343)
|..-+.+++++..++.|+.++++....+..+.|-+
T Consensus 8 P~v~v~~~dfne~~kRLdeieekvef~~~Ev~Qr~ 42 (75)
T COG4064 8 PKVVVDPDDFNEIHKRLDEIEEKVEFVNGEVYQRI 42 (75)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45567789999999999999999876544444444
Done!