Query 019278
Match_columns 343
No_of_seqs 188 out of 1508
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:09:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 4E-103 8E-108 755.5 25.1 291 31-323 21-324 (324)
2 cd00693 secretory_peroxidase H 100.0 2.5E-96 5E-101 705.7 24.4 287 34-322 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 3E-71 6.6E-76 515.2 10.7 227 51-287 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 3.8E-69 8.3E-74 512.7 20.7 231 49-320 15-257 (289)
5 cd00691 ascorbate_peroxidase A 100.0 3.4E-65 7.3E-70 480.1 19.2 224 46-308 11-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 8.8E-65 1.9E-69 475.9 21.0 232 37-308 3-248 (250)
7 cd00692 ligninase Ligninase an 100.0 1.1E-64 2.5E-69 489.8 20.4 240 46-326 15-290 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 1E-63 2.2E-68 468.1 20.7 221 48-308 17-248 (251)
9 cd00314 plant_peroxidase_like 100.0 4.9E-59 1.1E-63 438.7 17.9 221 50-304 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 9E-59 1.9E-63 455.7 18.1 264 40-313 35-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 5E-55 1.1E-59 453.4 19.0 261 40-310 45-405 (716)
12 PRK15061 catalase/hydroperoxid 100.0 8.6E-53 1.9E-57 434.6 18.9 264 40-313 47-414 (726)
13 cd08201 plant_peroxidase_like_ 100.0 3.2E-49 7E-54 370.3 13.8 213 57-304 33-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 5.7E-42 1.2E-46 325.1 17.1 218 53-306 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 3.2E-36 7E-41 313.2 17.3 219 50-307 429-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 6.5E-36 1.4E-40 309.5 17.8 218 53-306 442-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 6.6E-34 1.4E-38 282.9 15.2 246 50-305 71-415 (730)
18 COG0376 KatG Catalase (peroxid 99.5 3.4E-13 7.4E-18 135.7 13.9 214 53-306 452-725 (730)
19 PF11895 DUF3415: Domain of un 67.0 6.1 0.00013 31.2 2.9 33 290-326 2-34 (80)
20 PTZ00411 transaldolase-like pr 54.9 68 0.0015 31.9 8.6 47 142-188 179-231 (333)
21 COG3763 Uncharacterized protei 45.8 36 0.00078 26.3 3.9 29 50-78 24-52 (71)
22 PHA03156 hypothetical protein; 39.5 40 0.00086 27.2 3.4 39 8-46 5-46 (90)
23 KOG0427 Ubiquitin conjugating 35.1 15 0.00032 31.8 0.4 51 3-76 108-158 (161)
24 TIGR00874 talAB transaldolase. 25.4 2E+02 0.0043 28.5 6.4 135 141-293 166-311 (317)
25 KOG0400 40S ribosomal protein 23.5 47 0.001 28.8 1.5 33 172-204 32-65 (151)
26 PLN02161 beta-amylase 20.6 1.3E+02 0.0027 31.9 4.1 34 280-317 234-272 (531)
27 PF07172 GRP: Glycine rich pro 20.3 1.1E+02 0.0023 24.9 2.9 17 8-24 7-23 (95)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=3.5e-103 Score=755.54 Aligned_cols=291 Identities=43% Similarity=0.757 Sum_probs=276.9
Q ss_pred CCCCCCcchhcccChhHHHHHHHHHHHHHHhCcChhHHHHHHHhhhccccCCCcceecCCCcccccccCCCCchhhhHHH
Q 019278 31 VAKGLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTSEQNARPNLSLRKEALKF 110 (343)
Q Consensus 31 ~~~~L~~~fY~~sCP~~e~iVr~~v~~~~~~~~~~a~~llRL~FHDc~v~GcDgSill~~~~~E~~~~~N~~l~~~g~~~ 110 (343)
.+++|+++||++|||++|+||+++|++.+.+||+++|++|||+||||||+||||||||+++..|+++++|.++ +||++
T Consensus 21 ~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~~~Ek~a~~N~~l--~Gf~~ 98 (324)
T PLN03030 21 QGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGSNTEKTALPNLLL--RGYDV 98 (324)
T ss_pred hhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCCcccccCCCCcCc--chHHH
Confidence 3467999999999999999999999999999999999999999999999999999999977789999999998 89999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHhhhhhhccCCCCCccCCCCCCCCCCccc--cCCCCCCCCCHHHHHHHHHHcCCCcc
Q 019278 111 VDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFAT--VVNLPSPFSNTTVILNDFREKTFNAR 188 (343)
Q Consensus 111 Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~--~~~lP~p~~~~~~l~~~F~~~Gl~~~ 188 (343)
||.||++||++||++||||||||+||||||+++|||.|+|++||||+++|.+ ..+||.|+.++++|++.|+++||+.+
T Consensus 99 i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~ 178 (324)
T PLN03030 99 IDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGLNTQ 178 (324)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCCCHH
Confidence 9999999999999999999999999999999999999999999999998866 45899999999999999999999999
Q ss_pred CcEeeccCcccccccCCCcccccCC------CCCCcchHHHHHHHhhcCCCCCCC-CCccccCCCCcccChHHHHHHhhc
Q 019278 189 ETVALSGGHTVGLAHCPAFTNRLYP------KQDPTLDKTFANNLKKTCPTSDSN-NTTVFDIRSPNVFDNKYYVDLMNR 261 (343)
Q Consensus 189 e~VaLsGaHTiG~~hc~~f~~Rly~------~~dp~~~~~~~~~L~~~Cp~~~~~-~~~~lD~~Tp~~FDN~Yy~~l~~~ 261 (343)
|||+||||||||++||.+|.+|+|| .+||+||+.|+..|++.||..+++ +.+++|+.||.+|||+||+||+.+
T Consensus 179 DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~ 258 (324)
T PLN03030 179 DLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKNG 258 (324)
T ss_pred HheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHHhc
Confidence 9999999999999999999999996 269999999999999999964333 267899999999999999999999
Q ss_pred ccccchhhhcccCcchHHHHHHhhhCh----HHHHHHHHHHHHHhhcCCCCCCCCCcccccccccc
Q 019278 262 QGLLTSDQDLYTDKRTRSIVTSFAVDQ----SLFFQEFANSMIKMSQLSVLTGKQGEIRAKCSVKN 323 (343)
Q Consensus 262 ~glL~SD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~Am~Km~~lgvltG~~GeIR~~C~~vN 323 (343)
+|+|+|||+|++|++|+++|++||.|+ +.|+++|++||+|||+|+|+||.+|||||+|+++|
T Consensus 259 rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 259 RGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred CCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 999999999999999999999999875 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.5e-96 Score=705.70 Aligned_cols=287 Identities=52% Similarity=0.922 Sum_probs=275.4
Q ss_pred CCCcchhcccChhHHHHHHHHHHHHHHhCcChhHHHHHHHhhhccccCCCcceecCCC---cccccccCCCCchhhhHHH
Q 019278 34 GLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGS---TSEQNARPNLSLRKEALKF 110 (343)
Q Consensus 34 ~L~~~fY~~sCP~~e~iVr~~v~~~~~~~~~~a~~llRL~FHDc~v~GcDgSill~~~---~~E~~~~~N~~l~~~g~~~ 110 (343)
||+++||++|||++|+||+++|++.+.++++++|++|||+||||||+||||||||+++ .+|+++++|.++ +||++
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l--~g~~~ 78 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSL--RGFDV 78 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCc--chhHH
Confidence 5999999999999999999999999999999999999999999999999999999865 679999999998 89999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHhhhhhhccCCCCCccCCCCCCCCCCccc--cCCCCCCCCCHHHHHHHHHHcCCCcc
Q 019278 111 VDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFAT--VVNLPSPFSNTTVILNDFREKTFNAR 188 (343)
Q Consensus 111 Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~--~~~lP~p~~~~~~l~~~F~~~Gl~~~ 188 (343)
||+||+++|+.||++||||||||||||+||+++|||.|+|++||+|+.++.+ .++||.|+.+++++++.|+++||+++
T Consensus 79 i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~ 158 (298)
T cd00693 79 IDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVT 158 (298)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCHH
Confidence 9999999999999999999999999999999999999999999999997766 46899999999999999999999999
Q ss_pred CcEeeccCcccccccCCCcccccCCC-----CCCcchHHHHHHHhhcCCCCCCCC-CccccCCCCcccChHHHHHHhhcc
Q 019278 189 ETVALSGGHTVGLAHCPAFTNRLYPK-----QDPTLDKTFANNLKKTCPTSDSNN-TTVFDIRSPNVFDNKYYVDLMNRQ 262 (343)
Q Consensus 189 e~VaLsGaHTiG~~hc~~f~~Rly~~-----~dp~~~~~~~~~L~~~Cp~~~~~~-~~~lD~~Tp~~FDN~Yy~~l~~~~ 262 (343)
|||||+||||||++||.+|.+|+|+. +||+|++.|+..|++.||+.+.++ .+++|..||.+|||+||++|+.++
T Consensus 159 d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~ 238 (298)
T cd00693 159 DLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGR 238 (298)
T ss_pred HheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhcc
Confidence 99999999999999999999999963 799999999999999999764333 788998899999999999999999
Q ss_pred cccchhhhcccCcchHHHHHHhhhChHHHHHHHHHHHHHhhcCCCCCCCCCccccccccc
Q 019278 263 GLLTSDQDLYTDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCSVK 322 (343)
Q Consensus 263 glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgvltG~~GeIR~~C~~v 322 (343)
|+|+||++|+.|++|+++|++||.||+.|+++|++||+||+++||+||.+||||++|++|
T Consensus 239 glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 239 GLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred cCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=3e-71 Score=515.20 Aligned_cols=227 Identities=50% Similarity=0.874 Sum_probs=209.8
Q ss_pred HHHHHHHHHHhCcChhHHHHHHHhhhccc-cCCCcceecCCCcccccccCCCCchhhhHHHHHHHHHHHHhhcCCCCCHH
Q 019278 51 VRKQIQNALKKDIGLAAGLIRIHFHDCFV-QGCDGSVLLEGSTSEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCA 129 (343)
Q Consensus 51 Vr~~v~~~~~~~~~~a~~llRL~FHDc~v-~GcDgSill~~~~~E~~~~~N~~l~~~g~~~Id~iK~~le~~cp~~VScA 129 (343)
||++|++.++++++++|++|||+|||||+ +|||||||+. .+|+++++|.+|. +++++|+.||+++|++||++||||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~--~~e~~~~~N~gl~-~~~~~i~~ik~~~~~~cp~~VS~A 77 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF--SAEKDAPPNRGLR-DGFDVIDPIKAKLEAACPGVVSCA 77 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS--TTGGGSGGGTTHH-HHHHHHHHHHHHHCHHSTTTS-HH
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc--ccccccccccCcc-eeeechhhHHhhhcccccCCCCHH
Confidence 79999999999999999999999999999 9999999995 5899999999996 699999999999999999999999
Q ss_pred HHHHHhhhhhhccCCCCCccCCCCCCCCCCcccc--CCCCCCCCCHHHHHHHHHHcCCCccCcEeeccCcccccccCCCc
Q 019278 130 DILALAARDSVALSGGPNYDLPLGRRDSKTFATV--VNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAF 207 (343)
Q Consensus 130 DilalAar~av~~~GGP~~~v~~GR~D~~~s~~~--~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGaHTiG~~hc~~f 207 (343)
|||+|||++||+.+|||.|+|++||+|++++.+. .+||.|..+++++++.|+++|||++|||||+||||||++||.+|
T Consensus 78 DiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f 157 (230)
T PF00141_consen 78 DIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCSSF 157 (230)
T ss_dssp HHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGGCT
T ss_pred HHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceecccccccceeccc
Confidence 9999999999999999999999999999999983 36999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcchHHHHHHHhhcCCCCCCCCCccccCCCCcccChHHHHHHhhcccccchhhhcccCcchHHHHHHhhhC
Q 019278 208 TNRLYPKQDPTLDKTFANNLKKTCPTSDSNNTTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFAVD 287 (343)
Q Consensus 208 ~~Rly~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~yA~d 287 (343)
. |+|..+||+|++.|+.. .| ..++++.+++| ||.+|||+||+++++++|+|+||++|+.|++|+++|++||+|
T Consensus 158 ~-rl~~~~dp~~d~~~~~~---~C-~~~~~~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~~V~~yA~d 230 (230)
T PF00141_consen 158 S-RLYFPPDPTMDPGYAGQ---NC-NSGGDNGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRPIVERYAQD 230 (230)
T ss_dssp G-GTSCSSGTTSTHHHHHH---SS-STSGCTCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHHHHHHHHHT
T ss_pred c-cccccccccccccccee---cc-CCCcccccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHHHHHHHhcC
Confidence 9 99987899999999988 99 44444477888 999999999999999999999999999999999999999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=3.8e-69 Score=512.70 Aligned_cols=231 Identities=30% Similarity=0.480 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHhCcChhHHHHHHHhhhcc-------ccCCCcceecCCCcccccccCCCCchhhhHHHHHHHHHHHHhh
Q 019278 49 SIVRKQIQNALKKDIGLAAGLIRIHFHDCF-------VQGCDGSVLLEGSTSEQNARPNLSLRKEALKFVDDLRARVHKE 121 (343)
Q Consensus 49 ~iVr~~v~~~~~~~~~~a~~llRL~FHDc~-------v~GcDgSill~~~~~E~~~~~N~~l~~~g~~~Id~iK~~le~~ 121 (343)
+.+++++ ..+.++|.++|.+|||+||||| ++||||||+++ +|+++++|.+|. +||++||+||+++
T Consensus 15 ~~~~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~---~E~~~~~N~gL~-~g~~vid~iK~~~--- 86 (289)
T PLN02608 15 EKARRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE---EEYSHGANNGLK-IAIDLCEPVKAKH--- 86 (289)
T ss_pred HHHHHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc---cccCCccccchH-HHHHHHHHHHHHc---
Confidence 4666777 4477899999999999999999 99999999994 799999999997 7999999999987
Q ss_pred cCCCCCHHHHHHHhhhhhhccCCCCCccCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHcCCCccCcEeeccCccccc
Q 019278 122 CGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGL 201 (343)
Q Consensus 122 cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGaHTiG~ 201 (343)
++|||||||+||||+||+.+|||.|+|++||+|++++.++++||+|+.+++++++.|+++|||++|||+|+||||||+
T Consensus 87 --~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTiG~ 164 (289)
T PLN02608 87 --PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHTLGR 164 (289)
T ss_pred --CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccccccc
Confidence 489999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred ccCCCccccc-CCCCCCcchHHHHHHHhhcCCCCCCCCCccccCCCCcccChHHHHHHhhc--ccc--cchhhhcccCcc
Q 019278 202 AHCPAFTNRL-YPKQDPTLDKTFANNLKKTCPTSDSNNTTVFDIRSPNVFDNKYYVDLMNR--QGL--LTSDQDLYTDKR 276 (343)
Q Consensus 202 ~hc~~f~~Rl-y~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~--~gl--L~SD~~L~~d~~ 276 (343)
+||. |+ |++ +.+ .||.+|||+||++++.+ +|+ |+||++|+.|++
T Consensus 165 ahc~----r~g~~g--------------------------~~~-~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~~ 213 (289)
T PLN02608 165 AHPE----RSGFDG--------------------------PWT-KEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPE 213 (289)
T ss_pred cccc----CCCCCC--------------------------CCC-CCCCccChHHHHHHHcCCcCCccccccCHhhhcChh
Confidence 9995 33 110 112 59999999999999999 788 799999999999
Q ss_pred hHHHHHHhhhChHHHHHHHHHHHHHhhcCCCCCCCCCccccccc
Q 019278 277 TRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCS 320 (343)
Q Consensus 277 t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgvltG~~GeIR~~C~ 320 (343)
|+++|+.||.||+.|+++|++||+||++|||+||++||+.+.-+
T Consensus 214 T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 214 FRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 99999999999999999999999999999999999999987654
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=3.4e-65 Score=480.10 Aligned_cols=224 Identities=30% Similarity=0.418 Sum_probs=201.1
Q ss_pred hHHHHHHHHHHHHHHhCcChhHHHHHHHhhhccccCCCcceecCCC------cccccccCCCCchhhhHHHHHHHHHHHH
Q 019278 46 KLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGS------TSEQNARPNLSLRKEALKFVDDLRARVH 119 (343)
Q Consensus 46 ~~e~iVr~~v~~~~~~~~~~a~~llRL~FHDc~v~GcDgSill~~~------~~E~~~~~N~~l~~~g~~~Id~iK~~le 119 (343)
..++||+++|++.+. +++++|.+|||+|||||+ ||+|++.++. .+|+++++|.+|. +||++||+||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~-~~~~~i~~iK~~~- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLD-IARKLLEPIKKKY- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchH-HHHHHHHHHHHHc-
Confidence 457799999999999 999999999999999984 4444444221 3699999999998 8999999999886
Q ss_pred hhcCCCCCHHHHHHHhhhhhhccCCCCCccCCCCCCCCCCccc---cCCCCCCCCCHHHHHHHHHHcCCCccCcEeeccC
Q 019278 120 KECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFAT---VVNLPSPFSNTTVILNDFREKTFNARETVALSGG 196 (343)
Q Consensus 120 ~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGa 196 (343)
| +|||||||+||||+||+.+|||.|+|++||+|+.++.. +++||.|+.+++++++.|+++||+++|||+|+||
T Consensus 86 ---~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGa 161 (253)
T cd00691 86 ---P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGA 161 (253)
T ss_pred ---C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhccc
Confidence 4 89999999999999999999999999999999999884 6789999999999999999999999999999999
Q ss_pred cccccccCCCcccccCCCCCCcchHHHHHHHhhcCCCCCCCCCccccCCCCcccChHHHHHHhhccc--------ccchh
Q 019278 197 HTVGLAHCPAFTNRLYPKQDPTLDKTFANNLKKTCPTSDSNNTTVFDIRSPNVFDNKYYVDLMNRQG--------LLTSD 268 (343)
Q Consensus 197 HTiG~~hc~~f~~Rly~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~g--------lL~SD 268 (343)
||||++||..+. |++ + |..||.+|||+||++|+.++| +|+||
T Consensus 162 HTiG~a~c~~~~---~~g--------------------------~-~~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD 211 (253)
T cd00691 162 HTLGRCHKERSG---YDG--------------------------P-WTKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTD 211 (253)
T ss_pred ceeecccccCCC---CCC--------------------------C-CCCCCCcccHHHHHHHhcCCCccCcCcceechhh
Confidence 999999996420 110 0 125999999999999999999 99999
Q ss_pred hhcccCcchHHHHHHhhhChHHHHHHHHHHHHHhhcCCCC
Q 019278 269 QDLYTDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVL 308 (343)
Q Consensus 269 ~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgvl 308 (343)
++|+.|++|+.+|+.||+|+++|+++|++||+||+++||.
T Consensus 212 ~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 212 KALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred HHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999985
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=8.8e-65 Score=475.90 Aligned_cols=232 Identities=28% Similarity=0.493 Sum_probs=209.3
Q ss_pred cchhc--ccChhHHHHHHHHHHHHHHhCcChhHHHHHHHhh-----hcccc--CCCcceecCCCcccccccCCCCchhhh
Q 019278 37 WTFYD--QSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFH-----DCFVQ--GCDGSVLLEGSTSEQNARPNLSLRKEA 107 (343)
Q Consensus 37 ~~fY~--~sCP~~e~iVr~~v~~~~~~~~~~a~~llRL~FH-----Dc~v~--GcDgSill~~~~~E~~~~~N~~l~~~g 107 (343)
.+||. +-|+.+++.+++.+++.+ .+++++|.+|||+|| ||+++ ||||||.++ +|+++++|.+|. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~---~E~~~~~N~gl~-~~ 77 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFD---AEQAHGANSGIH-IA 77 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCcccccc---ccccCCCccCHH-HH
Confidence 35665 348899999999999988 788999999999999 88876 999999774 799999999997 89
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHhhhhhhccCCCCCccCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHH-cCCC
Q 019278 108 LKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFATVVNLPSPFSNTTVILNDFRE-KTFN 186 (343)
Q Consensus 108 ~~~Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~-~Gl~ 186 (343)
|++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++.++++||.|+.++++|++.|++ +|||
T Consensus 78 ~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~ 152 (250)
T PLN02364 78 LRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVFAKQMGLS 152 (250)
T ss_pred HHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHHHHhcCCC
Confidence 99999999988 58999999999999999999999999999999999998888899999999999999996 6999
Q ss_pred ccCcEeeccCcccccccCCCcccccCCCCCCcchHHHHHHHhhcCCCCCCCCCccccCCCCcccChHHHHHHhhc--ccc
Q 019278 187 ARETVALSGGHTVGLAHCPAFTNRLYPKQDPTLDKTFANNLKKTCPTSDSNNTTVFDIRSPNVFDNKYYVDLMNR--QGL 264 (343)
Q Consensus 187 ~~e~VaLsGaHTiG~~hc~~f~~Rly~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~--~gl 264 (343)
++|||||+||||||++||. |+ + + .+ +++ .||.+|||+||++|+.+ +|+
T Consensus 153 ~~d~VaLsGaHTiG~~hc~----r~-~-----~--------------~g-----~~~-~tp~~fDn~Yy~~ll~~~~~gl 202 (250)
T PLN02364 153 DKDIVALSGAHTLGRCHKD----RS-G-----F--------------EG-----AWT-SNPLIFDNSYFKELLSGEKEGL 202 (250)
T ss_pred HHHheeeecceeeccccCC----CC-C-----C--------------CC-----CCC-CCCCccchHHHHHHhcCCcCCC
Confidence 9999999999999999993 32 1 0 00 112 59999999999999999 898
Q ss_pred cc--hhhhcccCcchHHHHHHhhhChHHHHHHHHHHHHHhhcCCCC
Q 019278 265 LT--SDQDLYTDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVL 308 (343)
Q Consensus 265 L~--SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgvl 308 (343)
|. ||+.|+.|++|+.+|+.||.|++.|+++|++||+||++||+-
T Consensus 203 l~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 203 LQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred ccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 75 999999999999999999999999999999999999999863
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.1e-64 Score=489.83 Aligned_cols=240 Identities=30% Similarity=0.404 Sum_probs=217.0
Q ss_pred hHHHHHHHHHHHHHHhCc---ChhHHHHHHHhhhccc------------cCCCcceecCCCcccccccCCCCchhhhHHH
Q 019278 46 KLESIVRKQIQNALKKDI---GLAAGLIRIHFHDCFV------------QGCDGSVLLEGSTSEQNARPNLSLRKEALKF 110 (343)
Q Consensus 46 ~~e~iVr~~v~~~~~~~~---~~a~~llRL~FHDc~v------------~GcDgSill~~~~~E~~~~~N~~l~~~g~~~ 110 (343)
.+|..|+++|++.+..+. ..++.+|||+||||++ +|||||||++. ..|+++++|.+| + ++
T Consensus 15 c~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~-~~E~~~~~N~gL--~--~v 89 (328)
T cd00692 15 CVWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFD-DIETAFHANIGL--D--EI 89 (328)
T ss_pred cchHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCC-cccccCCCCCCH--H--HH
Confidence 478899999999998554 4677799999999996 89999999985 369999999999 4 89
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHhhhhhhcc-CCCCCccCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHcCCCccC
Q 019278 111 VDDLRARVHKECGRVVSCADILALAARDSVAL-SGGPNYDLPLGRRDSKTFATVVNLPSPFSNTTVILNDFREKTFNARE 189 (343)
Q Consensus 111 Id~iK~~le~~cp~~VScADilalAar~av~~-~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e 189 (343)
|+.||..+|+.| |||||||+||||+||+. .|||.|+|++||+|++.+.++++||.|+.++++|++.|++||||++|
T Consensus 90 vd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F~~~Gf~~~E 166 (328)
T cd00692 90 VEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARFADAGFSPDE 166 (328)
T ss_pred HHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 999999999998 99999999999999995 69999999999999999988889999999999999999999999999
Q ss_pred cEeeccCcccccccCCCcccccCCCCCCcchHHHHHHHhhcCCCCCCCCCccccCCCCcccChHHHHHHh-hccc-----
Q 019278 190 TVALSGGHTVGLAHCPAFTNRLYPKQDPTLDKTFANNLKKTCPTSDSNNTTVFDIRSPNVFDNKYYVDLM-NRQG----- 263 (343)
Q Consensus 190 ~VaLsGaHTiG~~hc~~f~~Rly~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~lD~~Tp~~FDN~Yy~~l~-~~~g----- 263 (343)
||+|+||||||++|. .||+++ .+++|. ||.+|||+||++++ .+.+
T Consensus 167 ~VaLsGAHTiG~a~~----------~Dps~~------------------g~p~D~-TP~~FDn~Yf~~ll~~~~~~~g~~ 217 (328)
T cd00692 167 LVALLAAHSVAAQDF----------VDPSIA------------------GTPFDS-TPGVFDTQFFIETLLKGTAFPGSG 217 (328)
T ss_pred HhhhcccccccccCC----------CCCCCC------------------CCCCCC-CcchhcHHHHHHHHHcCCCCCCcc
Confidence 999999999999982 367764 245785 99999999999987 5555
Q ss_pred --------------ccchhhhcccCcchHHHHHHhhhChHHHHHHHHHHHHHhhcCCCCCCCCCccccccccccCCC
Q 019278 264 --------------LLTSDQDLYTDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCSVKNSNN 326 (343)
Q Consensus 264 --------------lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgvltG~~GeIR~~C~~vN~~~ 326 (343)
+|+||++|+.|++|+.+|++||+||++|+++|++||+||++|||. +..+.+|+.|++.+
T Consensus 218 ~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~dcs~v~p~~ 290 (328)
T cd00692 218 GNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTDCSDVIPPP 290 (328)
T ss_pred ccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhccCcccCCCC
Confidence 499999999999999999999999999999999999999999876 34788999999765
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=1e-63 Score=468.12 Aligned_cols=221 Identities=25% Similarity=0.437 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHHHhCcChhHHHHHHHhhhcc-------ccCCCcceecCCCcccccccCCCCchhhhHHHHHHHHHHHHh
Q 019278 48 ESIVRKQIQNALKKDIGLAAGLIRIHFHDCF-------VQGCDGSVLLEGSTSEQNARPNLSLRKEALKFVDDLRARVHK 120 (343)
Q Consensus 48 e~iVr~~v~~~~~~~~~~a~~llRL~FHDc~-------v~GcDgSill~~~~~E~~~~~N~~l~~~g~~~Id~iK~~le~ 120 (343)
.+-+++.+.+.+ .+...+|.+|||+||||. .|||||||++. +|+++++|.||. .++++||+||+++
T Consensus 17 ~~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~---~E~~~~~N~gL~-~~~~~i~~iK~~~-- 89 (251)
T PLN02879 17 VQRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP---QELAHDANNGLD-IAVRLLDPIKELF-- 89 (251)
T ss_pred HHHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh---hhccCCCcCChH-HHHHHHHHHHHHc--
Confidence 345677777776 456899999999999996 48999999984 799999999996 6999999999988
Q ss_pred hcCCCCCHHHHHHHhhhhhhccCCCCCccCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHcCCCccCcEeeccCcccc
Q 019278 121 ECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVG 200 (343)
Q Consensus 121 ~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGaHTiG 200 (343)
++|||||||+||||+||+.+|||.|+|++||+|+..+.++++||.|+.++++|++.|++||||++|||||+||||||
T Consensus 90 ---~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTiG 166 (251)
T PLN02879 90 ---PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLG 166 (251)
T ss_pred ---CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeecccccc
Confidence 58999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred cccCCCcccccCCCCCCcchHHHHHHHhhcCCCCCCCCCccccCCCCcccChHHHHHHhhc--ccc--cchhhhcccCcc
Q 019278 201 LAHCPAFTNRLYPKQDPTLDKTFANNLKKTCPTSDSNNTTVFDIRSPNVFDNKYYVDLMNR--QGL--LTSDQDLYTDKR 276 (343)
Q Consensus 201 ~~hc~~f~~Rly~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~--~gl--L~SD~~L~~d~~ 276 (343)
++||. | ++. .+ .+| .||.+|||+||++|+.+ +|+ |+||++|+.|++
T Consensus 167 ~ah~~----r-~g~-------------------~g-----~~d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~ 216 (251)
T PLN02879 167 RCHKE----R-SGF-------------------EG-----AWT-PNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPL 216 (251)
T ss_pred ccccc----c-ccC-------------------CC-----CCC-CCccceeHHHHHHHHcCCcCCCccchhhHHHhcCCc
Confidence 99996 2 110 00 133 59999999999999999 888 679999999999
Q ss_pred hHHHHHHhhhChHHHHHHHHHHHHHhhcCCCC
Q 019278 277 TRSIVTSFAVDQSLFFQEFANSMIKMSQLSVL 308 (343)
Q Consensus 277 t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgvl 308 (343)
|+++|++||.||+.|+++|++||+||++||+.
T Consensus 217 t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 217 FLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999974
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=4.9e-59 Score=438.68 Aligned_cols=221 Identities=33% Similarity=0.512 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHhCcChhHHHHHHHhhhcccc--------CCCcceecCCCcccccccCCCCchhhhHHHHHHHHHHHHhh
Q 019278 50 IVRKQIQNALKKDIGLAAGLIRIHFHDCFVQ--------GCDGSVLLEGSTSEQNARPNLSLRKEALKFVDDLRARVHKE 121 (343)
Q Consensus 50 iVr~~v~~~~~~~~~~a~~llRL~FHDc~v~--------GcDgSill~~~~~E~~~~~N~~l~~~g~~~Id~iK~~le~~ 121 (343)
.|+..|++.+.+++.+++.+|||+||||++. ||||||+++ +|+++++|.+|. +++++||+||+++|.
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~---~e~~~~~N~~l~-~~~~~l~~ik~~~~~- 76 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE---PELDRPENGGLD-KALRALEPIKSAYDG- 76 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc---ccccCcccccHH-HHHHHHHHHHHHcCC-
Confidence 5788999999999999999999999999985 999999997 599999999987 899999999999998
Q ss_pred cCCCCCHHHHHHHhhhhhhccC--CCCCccCCCCCCCCCCc-----cccCCCCCCCCCHHHHHHHHHHcCCCccCcEeec
Q 019278 122 CGRVVSCADILALAARDSVALS--GGPNYDLPLGRRDSKTF-----ATVVNLPSPFSNTTVILNDFREKTFNARETVALS 194 (343)
Q Consensus 122 cp~~VScADilalAar~av~~~--GGP~~~v~~GR~D~~~s-----~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLs 194 (343)
|++|||||||++|+++||+.+ |||.|+|++||+|++.+ .+.+++|.|..+++++++.|.++||+++|||||+
T Consensus 77 -~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~ 155 (255)
T cd00314 77 -GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALS 155 (255)
T ss_pred -CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhc
Confidence 899999999999999999999 99999999999999954 4467788888999999999999999999999999
Q ss_pred -cCccc-ccccCCCcccccCCCCCCcchHHHHHHHhhcCCCCCCCCCccccCCCCcccChHHHHHHhhcc----------
Q 019278 195 -GGHTV-GLAHCPAFTNRLYPKQDPTLDKTFANNLKKTCPTSDSNNTTVFDIRSPNVFDNKYYVDLMNRQ---------- 262 (343)
Q Consensus 195 -GaHTi-G~~hc~~f~~Rly~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~---------- 262 (343)
||||| |++||..|..|+ |+ .|+.||.+|||+||++++.++
T Consensus 156 ~GaHti~G~~~~~~~~~~~-------------------~~---------~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~ 207 (255)
T cd00314 156 AGAHTLGGKNHGDLLNYEG-------------------SG---------LWTSTPFTFDNAYFKNLLDMNWEWRVGSPDP 207 (255)
T ss_pred cCCeeccCcccCCCCCccc-------------------CC---------CCCCCCCccchHHHHHHhcCCcccccCCccC
Confidence 99999 999999887553 21 355799999999999999998
Q ss_pred ------cccchhhhcccCcchHHHHHHhhhChHHHHHHHHHHHHHhhc
Q 019278 263 ------GLLTSDQDLYTDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQ 304 (343)
Q Consensus 263 ------glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 304 (343)
++|+||+.|+.|++|+.+|++||.|++.|+++|++||+||++
T Consensus 208 ~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 208 DGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred CCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999985
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=9e-59 Score=455.74 Aligned_cols=264 Identities=22% Similarity=0.335 Sum_probs=232.3
Q ss_pred hcccChhHH-HHHHHHHHHHHHhC--------cChhHHHHHHHhhhccc-------cCCC-cceecCCCcccccccCCCC
Q 019278 40 YDQSCPKLE-SIVRKQIQNALKKD--------IGLAAGLIRIHFHDCFV-------QGCD-GSVLLEGSTSEQNARPNLS 102 (343)
Q Consensus 40 Y~~sCP~~e-~iVr~~v~~~~~~~--------~~~a~~llRL~FHDc~v-------~GcD-gSill~~~~~E~~~~~N~~ 102 (343)
|.+.+-.+. +.|+++|++.+... ...+|.+|||+|||+.+ ||++ |+|++. +|++++.|.+
T Consensus 35 ~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~---pe~~~~~N~g 111 (409)
T cd00649 35 YAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA---PLNSWPDNVN 111 (409)
T ss_pred HHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc---cccCcHhhhh
Confidence 344443332 68999999999864 47999999999999974 8997 799995 7999999999
Q ss_pred chhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHhhhhhhccCCCCCccCCCCCCCCCCcc---------------------
Q 019278 103 LRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFA--------------------- 161 (343)
Q Consensus 103 l~~~g~~~Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~--------------------- 161 (343)
|. +++.++++||+++ |..||+||+|+||+.+|||.+|||.|+|.+||.|...+.
T Consensus 112 L~-~a~~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~ 186 (409)
T cd00649 112 LD-KARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDR 186 (409)
T ss_pred HH-HHHHHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccch
Confidence 98 8999999999988 457999999999999999999999999999999986432
Q ss_pred -----------------ccC--CCCCCCCCHHHHHHHHHHcCCCccCcEee-ccCcccccccCCCcccccCCCCCCcchH
Q 019278 162 -----------------TVV--NLPSPFSNTTVILNDFREKTFNARETVAL-SGGHTVGLAHCPAFTNRLYPKQDPTLDK 221 (343)
Q Consensus 162 -----------------~~~--~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL-sGaHTiG~~hc~~f~~Rly~~~dp~~~~ 221 (343)
+++ .||+|..++.+|++.|.+||||++||||| +||||||++||..|..|++ +||++++
T Consensus 187 ~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg--~dP~~~~ 264 (409)
T cd00649 187 DLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG--PEPEAAP 264 (409)
T ss_pred hhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC--CCCCcCH
Confidence 223 79999999999999999999999999999 5999999999999999984 6999999
Q ss_pred HHHHHHh--hcCCCCCCC-C-Ccccc---CCCCcccChHHHHHHhh----------------------------------
Q 019278 222 TFANNLK--KTCPTSDSN-N-TTVFD---IRSPNVFDNKYYVDLMN---------------------------------- 260 (343)
Q Consensus 222 ~~~~~L~--~~Cp~~~~~-~-~~~lD---~~Tp~~FDN~Yy~~l~~---------------------------------- 260 (343)
.|++.|+ ++||...++ + +..+| +.||++|||+||++|+.
T Consensus 265 ~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~ 344 (409)
T cd00649 265 IEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSK 344 (409)
T ss_pred HHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCcccccc
Confidence 9999995 899974333 2 45677 57999999999999998
Q ss_pred --cccccchhhhcccCcchHHHHHHhhhChHHHHHHHHHHHHHh--hcCCCCCCCCC
Q 019278 261 --RQGLLTSDQDLYTDKRTRSIVTSFAVDQSLFFQEFANSMIKM--SQLSVLTGKQG 313 (343)
Q Consensus 261 --~~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km--~~lgvltG~~G 313 (343)
++|||+||++|+.|++|+++|++||+|++.||++|++||+|| +.|||++---|
T Consensus 345 ~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 345 KHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred ccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 569999999999999999999999999999999999999999 57999875544
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=5e-55 Score=453.38 Aligned_cols=261 Identities=23% Similarity=0.318 Sum_probs=228.3
Q ss_pred hcccChhH-HHHHHHHHHHHHHhC--------cChhHHHHHHHhhhccc-------cCCC-cceecCCCcccccccCCCC
Q 019278 40 YDQSCPKL-ESIVRKQIQNALKKD--------IGLAAGLIRIHFHDCFV-------QGCD-GSVLLEGSTSEQNARPNLS 102 (343)
Q Consensus 40 Y~~sCP~~-e~iVr~~v~~~~~~~--------~~~a~~llRL~FHDc~v-------~GcD-gSill~~~~~E~~~~~N~~ 102 (343)
|.+.+-.. .+.||++|++.+... ...+|.+|||+||++.+ |||+ |+|++. +|++++.|.+
T Consensus 45 y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~---P~~sw~~N~~ 121 (716)
T TIGR00198 45 YAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA---PLNSWPDNVN 121 (716)
T ss_pred HHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc---cccCchhhhh
Confidence 44444333 257999999999874 47999999999999974 8985 889995 7999999999
Q ss_pred chhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHhhhhhhccCCCCCccCCCCCCCCCCcc---------------------
Q 019278 103 LRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFA--------------------- 161 (343)
Q Consensus 103 l~~~g~~~Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~--------------------- 161 (343)
|. +++.++++||+ +||++|||||||+||+++|||.+|||.|+|.+||+|+..+.
T Consensus 122 Ld-ka~~lL~pIk~----kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~ 196 (716)
T TIGR00198 122 LD-KARRLLWPIKK----KYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRES 196 (716)
T ss_pred HH-HHHHHHHHHHH----HCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhcccccccc
Confidence 99 89999999997 47899999999999999999999999999999999994221
Q ss_pred ----------------c--cCCCCCCCCCHHHHHHHHHHcCCCccCcEeec-cCcccccccCCCcccccCCCCCCcchHH
Q 019278 162 ----------------T--VVNLPSPFSNTTVILNDFREKTFNARETVALS-GGHTVGLAHCPAFTNRLYPKQDPTLDKT 222 (343)
Q Consensus 162 ----------------~--~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLs-GaHTiG~~hc~~f~~Rly~~~dp~~~~~ 222 (343)
+ ..++|+|..++.+|++.|++||||++|||||+ ||||||++||.+|.+|+ ++||++++.
T Consensus 197 l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl--g~dP~~~~~ 274 (716)
T TIGR00198 197 LENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI--GPDPEGAPI 274 (716)
T ss_pred ccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC--CCCCCcCHH
Confidence 1 22699999999999999999999999999996 99999999999999998 589999999
Q ss_pred HHHHHhhcCCCCC---CCC-Ccccc---CCCCcccChHHHHHHhhc----------------------------------
Q 019278 223 FANNLKKTCPTSD---SNN-TTVFD---IRSPNVFDNKYYVDLMNR---------------------------------- 261 (343)
Q Consensus 223 ~~~~L~~~Cp~~~---~~~-~~~lD---~~Tp~~FDN~Yy~~l~~~---------------------------------- 261 (343)
|++.|+.+||... .++ ++.+| +.||.+|||+||+||+.+
T Consensus 275 ~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~ 354 (716)
T TIGR00198 275 EEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHN 354 (716)
T ss_pred HHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccc
Confidence 9999999998532 222 45666 579999999999999975
Q ss_pred ccccchhhhcccCcchHHHHHHhhhChHHHHHHHHHHHHHhhc--CCCCCC
Q 019278 262 QGLLTSDQDLYTDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQ--LSVLTG 310 (343)
Q Consensus 262 ~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~--lgvltG 310 (343)
+++|+||++|..|++++++|++||.|++.|+++|++||+||++ +|++.-
T Consensus 355 ~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~ 405 (716)
T TIGR00198 355 PIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSR 405 (716)
T ss_pred cCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhh
Confidence 6899999999999999999999999999999999999999995 666543
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=8.6e-53 Score=434.60 Aligned_cols=264 Identities=22% Similarity=0.342 Sum_probs=228.9
Q ss_pred hcccChhH-HHHHHHHHHHHHHhC--------cChhHHHHHHHhhhccc-------cCCC-cceecCCCcccccccCCCC
Q 019278 40 YDQSCPKL-ESIVRKQIQNALKKD--------IGLAAGLIRIHFHDCFV-------QGCD-GSVLLEGSTSEQNARPNLS 102 (343)
Q Consensus 40 Y~~sCP~~-e~iVr~~v~~~~~~~--------~~~a~~llRL~FHDc~v-------~GcD-gSill~~~~~E~~~~~N~~ 102 (343)
|.+-+-.. .+.|+++|.+.+... ...+|.+|||+||++.+ |||+ |+|++. +|++++.|.+
T Consensus 47 y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~---pe~~w~~N~g 123 (726)
T PRK15061 47 YAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA---PLNSWPDNVN 123 (726)
T ss_pred HHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc---ccccchhhhh
Confidence 44444333 357999999999864 47999999999999974 8996 799995 7999999999
Q ss_pred chhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHhhhhhhccCCCCCccCCCCCCCCCCccc--------------------
Q 019278 103 LRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFAT-------------------- 162 (343)
Q Consensus 103 l~~~g~~~Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~-------------------- 162 (343)
|. +++.++++||+++ |..||+||+|+||+.+|||.+|||.|+|.+||.|...+..
T Consensus 124 L~-ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~ 198 (726)
T PRK15061 124 LD-KARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGE 198 (726)
T ss_pred HH-HHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccc
Confidence 99 8999999999988 4579999999999999999999999999999999753221
Q ss_pred ---------------------cCCCCCCCCCHHHHHHHHHHcCCCccCcEeec-cCcccccccCCCcccccCCCCCCcch
Q 019278 163 ---------------------VVNLPSPFSNTTVILNDFREKTFNARETVALS-GGHTVGLAHCPAFTNRLYPKQDPTLD 220 (343)
Q Consensus 163 ---------------------~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLs-GaHTiG~~hc~~f~~Rly~~~dp~~~ 220 (343)
...+|+|..++.+|++.|.+||||++|||||+ ||||||++||..|..|+ ++||.++
T Consensus 199 ~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl--gpdP~~a 276 (726)
T PRK15061 199 RDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV--GPEPEAA 276 (726)
T ss_pred cccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc--CCCCCcC
Confidence 12379999999999999999999999999995 99999999999999998 5799999
Q ss_pred HHHHHHH--hhcCCCCCCC-C-Ccccc---CCCCcccChHHHHHHhhc--------------------------------
Q 019278 221 KTFANNL--KKTCPTSDSN-N-TTVFD---IRSPNVFDNKYYVDLMNR-------------------------------- 261 (343)
Q Consensus 221 ~~~~~~L--~~~Cp~~~~~-~-~~~lD---~~Tp~~FDN~Yy~~l~~~-------------------------------- 261 (343)
+.+++.| +++||.+.++ + +..+| +.||.+|||+||++|+.+
T Consensus 277 ~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~ 356 (726)
T PRK15061 277 PIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPS 356 (726)
T ss_pred HHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccc
Confidence 9999998 4899974332 3 45677 579999999999999985
Q ss_pred ----ccccchhhhcccCcchHHHHHHhhhChHHHHHHHHHHHHHhhc--CCCCCCCCC
Q 019278 262 ----QGLLTSDQDLYTDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQ--LSVLTGKQG 313 (343)
Q Consensus 262 ----~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~--lgvltG~~G 313 (343)
.+||+||++|..||+++++|++||+|+++|+++|++||+||++ +|+++---|
T Consensus 357 ~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 357 KKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred cccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhcC
Confidence 5899999999999999999999999999999999999999965 777654433
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=3.2e-49 Score=370.29 Aligned_cols=213 Identities=25% Similarity=0.322 Sum_probs=175.4
Q ss_pred HHHHhCcChhHHHHHHHhhhcc-------ccCCCcceecCCCccccc-ccCCCCchhhhHHHHHHHHHHHHhhcCCCCCH
Q 019278 57 NALKKDIGLAAGLIRIHFHDCF-------VQGCDGSVLLEGSTSEQN-ARPNLSLRKEALKFVDDLRARVHKECGRVVSC 128 (343)
Q Consensus 57 ~~~~~~~~~a~~llRL~FHDc~-------v~GcDgSill~~~~~E~~-~~~N~~l~~~g~~~Id~iK~~le~~cp~~VSc 128 (343)
.....++++++.+|||+||||| ++||||||+++...+|+. .+.|..+ ++|+.|+.+ +|||
T Consensus 33 ~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~~~En~G~~~n~~l--~~~~~i~~~----------~VSc 100 (264)
T cd08201 33 CAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELDRPENIGSGFNTTL--NFFVNFYSP----------RSSM 100 (264)
T ss_pred cCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCCChhhccCchhhcc--ccceeeccC----------ccCH
Confidence 3445788999999999999999 899999999975455665 4445555 677766443 6999
Q ss_pred HHHHHHhhhhhhccCCCCCccCCCCCCCCCCccccCCCCCCCCCHHHHHHHHHHcCCCccCcEeecc-CcccccccCCCc
Q 019278 129 ADILALAARDSVALSGGPNYDLPLGRRDSKTFATVVNLPSPFSNTTVILNDFREKTFNARETVALSG-GHTVGLAHCPAF 207 (343)
Q Consensus 129 ADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsG-aHTiG~~hc~~f 207 (343)
|||||||||+||+.+|||.|+|++||+|++.+.+.+ ||.|+.++++|++.|++|||+++|||+|+| |||||++||..|
T Consensus 101 ADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f 179 (264)
T cd08201 101 ADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDF 179 (264)
T ss_pred HHHHHHHHHHHHHHcCCCeecccccCCCcccccccc-CCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccc
Confidence 999999999999999999999999999999988875 999999999999999999999999999995 999999999998
Q ss_pred ccccCCCCCCcchHHHHHHHhhcCCCCCCCCCccccCCCCcccChHHHHHHhhccc----------ccchhhhcccCcch
Q 019278 208 TNRLYPKQDPTLDKTFANNLKKTCPTSDSNNTTVFDIRSPNVFDNKYYVDLMNRQG----------LLTSDQDLYTDKRT 277 (343)
Q Consensus 208 ~~Rly~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~g----------lL~SD~~L~~d~~t 277 (343)
.++.-++ + ..++..++|+ ||.+|||+||++++.+.. .+.||..++..+.-
T Consensus 180 ~~~~~~g---~----------------~~~~~~p~ds-tp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n 239 (264)
T cd08201 180 PEIVPPG---S----------------VPDTVLQFFD-TTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGN 239 (264)
T ss_pred hhhcCCc---c----------------ccCCCCCCCC-CccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCcc
Confidence 7653210 0 0011346775 999999999999998742 36799999975443
Q ss_pred HHHHHHhhhChHHHHHHHHHHHHHhhc
Q 019278 278 RSIVTSFAVDQSLFFQEFANSMIKMSQ 304 (343)
Q Consensus 278 ~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 304 (343)
..++..| ++..|.+.++..+.||.+
T Consensus 240 -~t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 240 -VTMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred -HHHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 3456677 789999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=5.7e-42 Score=325.09 Aligned_cols=218 Identities=19% Similarity=0.295 Sum_probs=183.0
Q ss_pred HHHHHHHHhCcChhHHHHHHHhhhccc-------cCCCcc-eecCCCcccccccCCCC--chhhhHHHHHHHHHHHHhh-
Q 019278 53 KQIQNALKKDIGLAAGLIRIHFHDCFV-------QGCDGS-VLLEGSTSEQNARPNLS--LRKEALKFVDDLRARVHKE- 121 (343)
Q Consensus 53 ~~v~~~~~~~~~~a~~llRL~FHDc~v-------~GcDgS-ill~~~~~E~~~~~N~~--l~~~g~~~Id~iK~~le~~- 121 (343)
+.+++.+.......+.+|||+||++.+ |||+|+ |.+. +|++|+.|.+ |. +.+.++++||+++...
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~---pe~~w~~N~~~~L~-~~~~~Le~ik~~~~~~~ 92 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA---PQKDWEVNEPEELA-KVLAVLEGIQKEFNESQ 92 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc---cccCcCccCcHHHH-HHHHHHHHHHHHhcccc
Confidence 667777778788999999999999974 899999 8884 8999999999 98 8999999999998421
Q ss_pred cC-CCCCHHHHHHHhhhhhhccCCC-----CCccCCCCCCCCCCccc-----cCCCCCCC------------CCHHHHHH
Q 019278 122 CG-RVVSCADILALAARDSVALSGG-----PNYDLPLGRRDSKTFAT-----VVNLPSPF------------SNTTVILN 178 (343)
Q Consensus 122 cp-~~VScADilalAar~av~~~GG-----P~~~v~~GR~D~~~s~~-----~~~lP~p~------------~~~~~l~~ 178 (343)
-+ ..||+||+|+||+..|||.+|| |.|+|.+||.|.+.+.. ...+|.+. ...++|++
T Consensus 93 ~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd 172 (297)
T cd08200 93 SGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVD 172 (297)
T ss_pred cCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHH
Confidence 11 2699999999999999999999 99999999999987643 12345432 23478999
Q ss_pred HHHHcCCCccCcEeeccCc-ccccccCCCcccccCCCCCCcchHHHHHHHhhcCCCCCCCCCccccCCCCcccChHHHHH
Q 019278 179 DFREKTFNARETVALSGGH-TVGLAHCPAFTNRLYPKQDPTLDKTFANNLKKTCPTSDSNNTTVFDIRSPNVFDNKYYVD 257 (343)
Q Consensus 179 ~F~~~Gl~~~e~VaLsGaH-TiG~~hc~~f~~Rly~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~lD~~Tp~~FDN~Yy~~ 257 (343)
.|.+||||++|||||+||| ++|.+|..++. .-++.+|.+|||.||++
T Consensus 173 ~f~rlglsd~EmvaL~Gg~r~lG~~~~~s~~--------------------------------G~wT~~p~~f~N~fF~n 220 (297)
T cd08200 173 KAQLLTLTAPEMTVLVGGLRVLGANYGGSKH--------------------------------GVFTDRPGVLTNDFFVN 220 (297)
T ss_pred HHHhCCCChHHHhheecchhhcccCCCCCCC--------------------------------CCCcCCCCccccHHHHH
Confidence 9999999999999999997 79998854321 01235899999999999
Q ss_pred Hhhcc--------------------c-----ccchhhhcccCcchHHHHHHhhhC--hHHHHHHHHHHHHHhhcCC
Q 019278 258 LMNRQ--------------------G-----LLTSDQDLYTDKRTRSIVTSFAVD--QSLFFQEFANSMIKMSQLS 306 (343)
Q Consensus 258 l~~~~--------------------g-----lL~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km~~lg 306 (343)
|++.. | .+.+|..|.+|++.|++|+.||.| ++.||+||++||.||+++.
T Consensus 221 LLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 221 LLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred HhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 99520 1 267899999999999999999998 9999999999999999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3.2e-36 Score=313.25 Aligned_cols=219 Identities=21% Similarity=0.304 Sum_probs=178.8
Q ss_pred HHHHHHHHH---HHhCcChhHHHHHHHhhhccc-------cCCCcc-eecCCCcccccccCC--CCchhhhHHHHHHHHH
Q 019278 50 IVRKQIQNA---LKKDIGLAAGLIRIHFHDCFV-------QGCDGS-VLLEGSTSEQNARPN--LSLRKEALKFVDDLRA 116 (343)
Q Consensus 50 iVr~~v~~~---~~~~~~~a~~llRL~FHDc~v-------~GcDgS-ill~~~~~E~~~~~N--~~l~~~g~~~Id~iK~ 116 (343)
+|+++|..+ +.......+.|||++||++.+ ||++|+ |++. +|++++.| .+|. +.+.++|+||+
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~---pe~~w~~N~p~gL~-~vl~~Le~Ik~ 504 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE---PQKNWPVNEPTRLA-KVLAVLEKIQA 504 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc---hhcCcccCCHHHHH-HHHHHHHHHHH
Confidence 345555543 455667889999999999974 899998 8884 89999999 8998 89999999999
Q ss_pred HHHhhcCCCCCHHHHHHHhhhhhhccC---CCC--CccCCCCCCCCCCccc--cCCCC---C------------CCCCHH
Q 019278 117 RVHKECGRVVSCADILALAARDSVALS---GGP--NYDLPLGRRDSKTFAT--VVNLP---S------------PFSNTT 174 (343)
Q Consensus 117 ~le~~cp~~VScADilalAar~av~~~---GGP--~~~v~~GR~D~~~s~~--~~~lP---~------------p~~~~~ 174 (343)
++.. ..||+||+|+||+.+|||.+ ||| .|+|.+||.|++.... +...| . ......
T Consensus 505 ~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~ 581 (716)
T TIGR00198 505 EFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEE 581 (716)
T ss_pred HcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHH
Confidence 8842 27999999999999999999 897 6899999999987643 22111 1 112356
Q ss_pred HHHHHHHHcCCCccCcEeeccC-cccccccCCCcccccCCCCCCcchHHHHHHHhhcCCCCCCCCCccccCCCCcccChH
Q 019278 175 VILNDFREKTFNARETVALSGG-HTVGLAHCPAFTNRLYPKQDPTLDKTFANNLKKTCPTSDSNNTTVFDIRSPNVFDNK 253 (343)
Q Consensus 175 ~l~~~F~~~Gl~~~e~VaLsGa-HTiG~~hc~~f~~Rly~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~lD~~Tp~~FDN~ 253 (343)
.|++.|.++|||++|||||+|| |++|++|..++. . ..+.+|.+|||.
T Consensus 582 ~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~~------------------------------G--~~T~~p~~f~Nd 629 (716)
T TIGR00198 582 LLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSKH------------------------------G--VFTDRVGVLSND 629 (716)
T ss_pred HHHHHHHhCCCChHHHHheecchhhccccCCCCCC------------------------------C--CCcCCCCccccH
Confidence 6899999999999999999998 599999964321 0 122489999999
Q ss_pred HHHHHhhcc--------------------c---c--cchhhhcccCcchHHHHHHhhhCh--HHHHHHHHHHHHHhhcCC
Q 019278 254 YYVDLMNRQ--------------------G---L--LTSDQDLYTDKRTRSIVTSFAVDQ--SLFFQEFANSMIKMSQLS 306 (343)
Q Consensus 254 Yy~~l~~~~--------------------g---l--L~SD~~L~~d~~t~~~V~~yA~d~--~~F~~~Fa~Am~Km~~lg 306 (343)
||+||++.. | + ..+|..|.+|++.|++|+.||+|+ ++|++||++||.|+.+++
T Consensus 630 fF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ld 709 (716)
T TIGR00198 630 FFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLD 709 (716)
T ss_pred HHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHHhCC
Confidence 999999721 1 2 267999999999999999999997 899999999999999986
Q ss_pred C
Q 019278 307 V 307 (343)
Q Consensus 307 v 307 (343)
-
T Consensus 710 r 710 (716)
T TIGR00198 710 R 710 (716)
T ss_pred C
Confidence 4
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=6.5e-36 Score=309.54 Aligned_cols=218 Identities=20% Similarity=0.316 Sum_probs=182.8
Q ss_pred HHHHHHHHhCcChhHHHHHHHhhhccc-------cCCCcc-eecCCCcccccccCCC--CchhhhHHHHHHHHHHHHhhc
Q 019278 53 KQIQNALKKDIGLAAGLIRIHFHDCFV-------QGCDGS-VLLEGSTSEQNARPNL--SLRKEALKFVDDLRARVHKEC 122 (343)
Q Consensus 53 ~~v~~~~~~~~~~a~~llRL~FHDc~v-------~GcDgS-ill~~~~~E~~~~~N~--~l~~~g~~~Id~iK~~le~~c 122 (343)
..+++.+....-..+.|||++||++.+ ||++|+ |+|. +|++++.|. +|. +.+.++|+||++++..-
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~---Pq~~w~~N~p~~L~-~vl~~LE~Ik~~f~~~~ 517 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA---PQKDWEVNEPAQLA-KVLAVLEGIQAEFNAAQ 517 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc---cccCccccCHHHHH-HHHHHHHHHHHHHhhcc
Confidence 567777777778899999999999974 899998 9995 899999999 898 89999999999996432
Q ss_pred --CCCCCHHHHHHHhhhhhhccC---CC--CCccCCCCCCCCCCccc-----cCCCCCCC------------CCHHHHHH
Q 019278 123 --GRVVSCADILALAARDSVALS---GG--PNYDLPLGRRDSKTFAT-----VVNLPSPF------------SNTTVILN 178 (343)
Q Consensus 123 --p~~VScADilalAar~av~~~---GG--P~~~v~~GR~D~~~s~~-----~~~lP~p~------------~~~~~l~~ 178 (343)
...||+||+|+||+..|||.+ || |.|+|.+||.|++.... ...+|... ...+.|++
T Consensus 518 ~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d 597 (726)
T PRK15061 518 SGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELLVD 597 (726)
T ss_pred CCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHHHH
Confidence 136999999999999999998 58 99999999999987644 12456533 13477999
Q ss_pred HHHHcCCCccCcEeeccCc-ccccccCCCcccccCCCCCCcchHHHHHHHhhcCCCCCCCCCccccCCCCcccChHHHHH
Q 019278 179 DFREKTFNARETVALSGGH-TVGLAHCPAFTNRLYPKQDPTLDKTFANNLKKTCPTSDSNNTTVFDIRSPNVFDNKYYVD 257 (343)
Q Consensus 179 ~F~~~Gl~~~e~VaLsGaH-TiG~~hc~~f~~Rly~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~lD~~Tp~~FDN~Yy~~ 257 (343)
.|.++|||++|||||+||| ++|.+|..++. . ..+.+|.+|||.||+|
T Consensus 598 ~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~~------------------------------G--~~T~~p~~fsNdfFvn 645 (726)
T PRK15061 598 KAQLLTLTAPEMTVLVGGLRVLGANYGGSKH------------------------------G--VFTDRPGVLTNDFFVN 645 (726)
T ss_pred HHHhCCCChHHHhheecchhhcccCCCCCCC------------------------------C--CCcCCCCccccHHHHH
Confidence 9999999999999999997 78998854321 0 1224899999999999
Q ss_pred Hhhcc--------------------c---c--cchhhhcccCcchHHHHHHhhhC--hHHHHHHHHHHHHHhhcCC
Q 019278 258 LMNRQ--------------------G---L--LTSDQDLYTDKRTRSIVTSFAVD--QSLFFQEFANSMIKMSQLS 306 (343)
Q Consensus 258 l~~~~--------------------g---l--L~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km~~lg 306 (343)
|++.. | + +.+|..|.+|++.|++|+.||.| +++|++||++||.|+++++
T Consensus 646 LLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeld 721 (726)
T PRK15061 646 LLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLD 721 (726)
T ss_pred HhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCC
Confidence 99521 1 1 47899999999999999999999 9999999999999999986
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-34 Score=282.93 Aligned_cols=246 Identities=23% Similarity=0.323 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHhC--------cChhHHHHHHHhhhccc-------cCCC-cceecCCCcccccccCCCCchhhhHHHHHH
Q 019278 50 IVRKQIQNALKKD--------IGLAAGLIRIHFHDCFV-------QGCD-GSVLLEGSTSEQNARPNLSLRKEALKFVDD 113 (343)
Q Consensus 50 iVr~~v~~~~~~~--------~~~a~~llRL~FHDc~v-------~GcD-gSill~~~~~E~~~~~N~~l~~~g~~~Id~ 113 (343)
.|++.+...+... ...+|.+|||+||.+++ ||.. |..++ .++.++|.|.+|+ +++.++++
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRF---aPlnSWPDN~nLD-KarRLLWP 146 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRF---APLNSWPDNANLD-KARRLLWP 146 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceec---ccccCCCcccchH-HHHHHhhh
Confidence 5667777777654 35899999999999975 5554 55666 4799999999999 99999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHhhhhhhccCCCCCccCCCCCCCCCCccc-------------------------------
Q 019278 114 LRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFAT------------------------------- 162 (343)
Q Consensus 114 iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~------------------------------- 162 (343)
||+++ +..||+||++.|++.+|+|.+|++++.|..||.|-..+..
T Consensus 147 IKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqM 222 (730)
T COG0376 147 IKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQM 222 (730)
T ss_pred HhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhhee
Confidence 99988 6689999999999999999999999999999999544321
Q ss_pred ---------cCCCCCCCCCHHHHHHHHHHcCCCccCcEeec-cCcccccccCCCcccccCCCCCCcchHHHHHHH--hhc
Q 019278 163 ---------VVNLPSPFSNTTVILNDFREKTFNARETVALS-GGHTVGLAHCPAFTNRLYPKQDPTLDKTFANNL--KKT 230 (343)
Q Consensus 163 ---------~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLs-GaHTiG~~hc~~f~~Rly~~~dp~~~~~~~~~L--~~~ 230 (343)
.+..|+|..+..+++..|+||++|++|.|||+ ||||+|++|...-..- -+++|.-.+--.+.| .++
T Consensus 223 GLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~--vg~ePe~a~ie~qGlGW~~~ 300 (730)
T COG0376 223 GLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASN--VGPEPEAAPIEQQGLGWANT 300 (730)
T ss_pred eeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhh--cCCCccccchhhhccccccc
Confidence 34688999999999999999999999999998 6999999998763221 146776555555544 455
Q ss_pred CCCCCC-CC-C---ccccCCCCcccChHHHHHHhhc-----------------------------------ccccchhhh
Q 019278 231 CPTSDS-NN-T---TVFDIRSPNVFDNKYYVDLMNR-----------------------------------QGLLTSDQD 270 (343)
Q Consensus 231 Cp~~~~-~~-~---~~lD~~Tp~~FDN~Yy~~l~~~-----------------------------------~glL~SD~~ 270 (343)
|..+.+ ++ + -.-+..||++|||+||.+|+.. ..||++|.+
T Consensus 301 ~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDla 380 (730)
T COG0376 301 YGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLA 380 (730)
T ss_pred cCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccchh
Confidence 554322 22 2 2345679999999999999864 148999999
Q ss_pred cccCcchHHHHHHhhhChHHHHHHHHHHHHHhhcC
Q 019278 271 LYTDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQL 305 (343)
Q Consensus 271 L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~l 305 (343)
|..||.+++|.++|.+|++.|.+.|++||.||.+-
T Consensus 381 Lr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHR 415 (730)
T COG0376 381 LRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHR 415 (730)
T ss_pred hhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999984
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.49 E-value=3.4e-13 Score=135.74 Aligned_cols=214 Identities=19% Similarity=0.315 Sum_probs=159.1
Q ss_pred HHHHHHHHhCcChhHHHHHHHhhhccc-------cCCCcc-eecCCCcccccccCCC--CchhhhHHHHHHHHHHHHhhc
Q 019278 53 KQIQNALKKDIGLAAGLIRIHFHDCFV-------QGCDGS-VLLEGSTSEQNARPNL--SLRKEALKFVDDLRARVHKEC 122 (343)
Q Consensus 53 ~~v~~~~~~~~~~a~~llRL~FHDc~v-------~GcDgS-ill~~~~~E~~~~~N~--~l~~~g~~~Id~iK~~le~~c 122 (343)
..++..+....-....++-.+|-.+-+ ||.+|. |.|. +.++|+.|. .|. +.+.+++.|.+..+
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa---PqkdWevN~P~~l~-kvl~~le~iq~~fn--- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA---PQKDWEVNQPAELA-KVLAVLEKIQKEFN--- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec---ccccCCCCCHHHHH-HHHHHHHHHHHHhc---
Confidence 456777777777889999999999853 788875 7784 789999995 465 78899999998886
Q ss_pred CCCCCHHHHHHHhhhhhhccC---CCC--CccCCCCCCCCCCccc-----cCCCCC-----------CCCC-HHHHHHHH
Q 019278 123 GRVVSCADILALAARDSVALS---GGP--NYDLPLGRRDSKTFAT-----VVNLPS-----------PFSN-TTVILNDF 180 (343)
Q Consensus 123 p~~VScADilalAar~av~~~---GGP--~~~v~~GR~D~~~s~~-----~~~lP~-----------p~~~-~~~l~~~F 180 (343)
..||.||+|+|++..+||.+ +|- .+++.+||.|+...-. ...-|- -..+ -.-|++.-
T Consensus 525 -kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkA 603 (730)
T COG0376 525 -KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKA 603 (730)
T ss_pred -CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHH
Confidence 46999999999999999974 564 5688999999876543 000011 1122 33477888
Q ss_pred HHcCCCccCcEeeccCc-ccccccCCCcccccCCCCCCcchHHHHHHHhhcCCCCCCCCCccccCCCCcccChHHHHHHh
Q 019278 181 REKTFNARETVALSGGH-TVGLAHCPAFTNRLYPKQDPTLDKTFANNLKKTCPTSDSNNTTVFDIRSPNVFDNKYYVDLM 259 (343)
Q Consensus 181 ~~~Gl~~~e~VaLsGaH-TiG~~hc~~f~~Rly~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~lD~~Tp~~FDN~Yy~~l~ 259 (343)
+-++||..||++|+||- .+|..+..+ ...+..| .|..+.|.||.||+
T Consensus 604 qlL~LtapemtVLiGGlRvLg~n~g~s------------------------------~~GVfT~--~pg~LtndFFvnLl 651 (730)
T COG0376 604 QLLTLTAPEMTVLIGGLRVLGANYGGS------------------------------KHGVFTD--RPGVLTNDFFVNLL 651 (730)
T ss_pred HHhccCCccceEEEcceEeeccCCCCC------------------------------ccceecc--Ccccccchhhhhhh
Confidence 88999999999999875 455443211 0122222 57788888888888
Q ss_pred hc----------c----------cc-----cchhhhcccCcchHHHHHHhhh--ChHHHHHHHHHHHHHhhcCC
Q 019278 260 NR----------Q----------GL-----LTSDQDLYTDKRTRSIVTSFAV--DQSLFFQEFANSMIKMSQLS 306 (343)
Q Consensus 260 ~~----------~----------gl-----L~SD~~L~~d~~t~~~V~~yA~--d~~~F~~~Fa~Am~Km~~lg 306 (343)
.- + |- -..|..+-+++..|.+.+-||. ++++|.+||.+||.|..++.
T Consensus 652 DM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 652 DMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred hccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 63 1 11 2467777788899999999997 47999999999999999875
No 19
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=66.98 E-value=6.1 Score=31.23 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCccccccccccCCC
Q 019278 290 LFFQEFANSMIKMSQLSVLTGKQGEIRAKCSVKNSNN 326 (343)
Q Consensus 290 ~F~~~Fa~Am~Km~~lgvltG~~GeIR~~C~~vN~~~ 326 (343)
....+|..||.||+.|| .+-.---+|+.|-+.+
T Consensus 2 ~m~~~F~~am~KlavLG----~d~~~LiDCSdVIP~p 34 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLG----HDRSDLIDCSDVIPVP 34 (80)
T ss_dssp HHHHHHHHHHHHHCTTT----S-GGGSEE-GGGS---
T ss_pred hHHHHHHHHHHHHHHhc----CChhhcccchhhccCC
Confidence 35679999999999995 4545556999998543
No 20
>PTZ00411 transaldolase-like protein; Provisional
Probab=54.92 E-value=68 Score=31.93 Aligned_cols=47 Identities=13% Similarity=0.025 Sum_probs=28.9
Q ss_pred cCCCCCccCCCCCCCCCCccc--cCCC-CCCC---CCHHHHHHHHHHcCCCcc
Q 019278 142 LSGGPNYDLPLGRRDSKTFAT--VVNL-PSPF---SNTTVILNDFREKTFNAR 188 (343)
Q Consensus 142 ~~GGP~~~v~~GR~D~~~s~~--~~~l-P~p~---~~~~~l~~~F~~~Gl~~~ 188 (343)
.+|-..|..+.||.|...-.+ .... +... ..+.++.+.|++.|+..+
T Consensus 179 eAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~ 231 (333)
T PTZ00411 179 QAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTI 231 (333)
T ss_pred HcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeE
Confidence 357788999999986543222 1112 2122 246677788888898753
No 21
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.85 E-value=36 Score=26.30 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCcChhHHHHHHHhhhcc
Q 019278 50 IVRKQIQNALKKDIGLAAGLIRIHFHDCF 78 (343)
Q Consensus 50 iVr~~v~~~~~~~~~~a~~llRL~FHDc~ 78 (343)
+.|+.+.+.++++|.+-...||+-+--.+
T Consensus 24 iark~~~k~lk~NPpine~~iR~M~~qmG 52 (71)
T COG3763 24 IARKQMKKQLKDNPPINEEMIRMMMAQMG 52 (71)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhC
Confidence 88999999999999999999999987654
No 22
>PHA03156 hypothetical protein; Provisional
Probab=39.51 E-value=40 Score=27.20 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCC--CC-CcchhcccChh
Q 019278 8 SFISLLLISSLLLASFTEAQKPPVAK--GL-SWTFYDQSCPK 46 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~L-~~~fY~~sCP~ 46 (343)
+|+-||+.-.+.+.+...++++.... .+ ..+||+.+|-.
T Consensus 5 ~~~~~l~~~~~cl~a~~~T~~~~~~s~~~~~~~~FY~~~C~a 46 (90)
T PHA03156 5 LFICFLIFFKICLRAAQLTDKAATTSGAILHNNNFYSNSCSA 46 (90)
T ss_pred hHHHHHHHHHHHHhhcCCCCCCccccCCcCCCCCccccCcCc
Confidence 56777777777777655554322222 23 57999999943
No 23
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=35.13 E-value=15 Score=31.82 Aligned_cols=51 Identities=27% Similarity=0.257 Sum_probs=34.3
Q ss_pred cchhHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhcccChhHHHHHHHHHHHHHHhCcChhHHHHHHHhhh
Q 019278 3 TASASSFISLLLISSLLLASFTEAQKPPVAKGLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHD 76 (343)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~fY~~sCP~~e~iVr~~v~~~~~~~~~~a~~llRL~FHD 76 (343)
.|++++...-|.++|.|-.+ .+-+ ..-..++|-++|-+. -.|.=.|-+|||
T Consensus 108 sPAmsv~SvClSIlSMLSSs-~eKq-----rP~Dn~~Yvk~C~~g-----------------rsPk~TrWwfHD 158 (161)
T KOG0427|consen 108 SPAMSVQSVCLSILSMLSSS-KEKQ-----RPTDNDRYVKNCKNG-----------------RSPKETRWWFHD 158 (161)
T ss_pred CcchhhHHHHHHHHHHHccC-cccc-----CCCccchhhhhccCC-----------------CCcccceeeecc
Confidence 46778877778877777664 3322 124567999999654 235566888998
No 24
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=25.35 E-value=2e+02 Score=28.48 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=65.4
Q ss_pred ccCCCCCccCCCCCCCCCCccccC--CCC----CCCCCHHHHHHHHHHcCCCccCcEeeccCcccccccCCCcccccCCC
Q 019278 141 ALSGGPNYDLPLGRRDSKTFATVV--NLP----SPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLYPK 214 (343)
Q Consensus 141 ~~~GGP~~~v~~GR~D~~~s~~~~--~lP----~p~~~~~~l~~~F~~~Gl~~~e~VaLsGaHTiG~~hc~~f~~Rly~~ 214 (343)
..+|-..|..+.||.|-..-...+ ..+ ++-..+.++.+.|++.|+..+=|.|=. .+++..+. + -+
T Consensus 166 a~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASf--Rn~~qv~~------l-aG 236 (317)
T TIGR00874 166 AEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASF--RNKEEILA------L-AG 236 (317)
T ss_pred HHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeecc--CCHHHHHH------H-HC
Confidence 345888999999998753211110 111 122356778888889998765443311 11111110 0 01
Q ss_pred CC-CcchHHHHHHHhhcCCCCC---CCC-CccccCCCCcccChHHHHHHhhcccccchhhhcccCcchHHHHHHhhhChH
Q 019278 215 QD-PTLDKTFANNLKKTCPTSD---SNN-TTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFAVDQS 289 (343)
Q Consensus 215 ~d-p~~~~~~~~~L~~~Cp~~~---~~~-~~~lD~~Tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~yA~d~~ 289 (343)
.| -+++|....+|...-..-. ... ....+ ..|..+|...|+-.++..+| .. .+...-++.|+.|+.
T Consensus 237 ~d~~Ti~p~ll~~L~~~~~~~~~~l~~~~~~~~~-~~~~~~~e~~fr~~~~~d~m-------a~-ekl~~gir~F~~d~~ 307 (317)
T TIGR00874 237 CDRLTISPALLDELKESTGPVERKLDPESAKKVD-KQPIILDESEFRFLHNEDAM-------AT-EKLAEGIRKFAADQE 307 (317)
T ss_pred CCeEeCCHHHHHHHHhCCCCcCccCCcccccccc-ccCCCCCHHHHHHHhCCCcc-------hH-HHHHHHHHHHHHHHH
Confidence 12 2577777777765321100 000 10111 13456788888644333221 11 123445666777766
Q ss_pred HHHH
Q 019278 290 LFFQ 293 (343)
Q Consensus 290 ~F~~ 293 (343)
....
T Consensus 308 ~Le~ 311 (317)
T TIGR00874 308 KLEK 311 (317)
T ss_pred HHHH
Confidence 5543
No 25
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=23.45 E-value=47 Score=28.83 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHcCCCccCcEe-eccCcccccccC
Q 019278 172 NTTVILNDFREKTFNARETVA-LSGGHTVGLAHC 204 (343)
Q Consensus 172 ~~~~l~~~F~~~Gl~~~e~Va-LsGaHTiG~~hc 204 (343)
++.+.+-.|+++||++.++=+ |--+|-||++.-
T Consensus 32 dvkeqI~K~akKGltpsqIGviLRDshGi~q~r~ 65 (151)
T KOG0400|consen 32 DVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVRF 65 (151)
T ss_pred HHHHHHHHHHHcCCChhHceeeeecccCcchhhe
Confidence 455566789999999988755 558999998863
No 26
>PLN02161 beta-amylase
Probab=20.63 E-value=1.3e+02 Score=31.90 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=24.3
Q ss_pred HHHHhhhChHHHHHHHHHHHHHhh-----cCCCCCCCCCcccc
Q 019278 280 IVTSFAVDQSLFFQEFANSMIKMS-----QLSVLTGKQGEIRA 317 (343)
Q Consensus 280 ~V~~yA~d~~~F~~~Fa~Am~Km~-----~lgvltG~~GeIR~ 317 (343)
-++.|. .|.+.|...|.-+. +|.|=-|..||.|-
T Consensus 234 plq~Y~----Dfm~SFr~~F~~~~~~~I~eI~VGlGP~GELRY 272 (531)
T PLN02161 234 AVQCYE----DFMLSFSTKFEPYIGNVIEEISIGLGPSGELRY 272 (531)
T ss_pred HHHHHH----HHHHHHHHHHHHHhcCceEEEEeccccCccccC
Confidence 456674 47777777777754 55666799999995
No 27
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.32 E-value=1.1e+02 Score=24.90 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 019278 8 SFISLLLISSLLLASFT 24 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~~~ 24 (343)
++++++|..+||++|..
T Consensus 7 llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 7 LLLGLLLAALLLISSEV 23 (95)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 33444443444555433
Done!