BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019279
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 124 LIGPQRTKQLVNGALILITVGGNDFV-NNYYLVPYSARSRQFSLPDYVKYVISEYRKLLT 182
LI P+ K++++ + +T + FV NN + P + R FS P Y++ +++ ++L
Sbjct: 501 LINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDQLTDEERILL 560
Query: 183 RLYDLGA 189
YD A
Sbjct: 561 LKYDSDA 567
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 124 LIGPQRTKQLVNGALILITVGGNDFV-NNYYLVPYSARSRQFSLPDYVKYVISEYRKLLT 182
LI P+ K++++ + +T + FV NN + P + R FS P Y++ +++ ++L
Sbjct: 500 LINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDQLTDEERILL 559
Query: 183 RLYDLGA 189
YD A
Sbjct: 560 LKYDSDA 566
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 124 LIGPQRTKQLVNGALILITVGGNDFV-NNYYLVPYSARSRQFSLPDYVKYVISEYRKLLT 182
LI P+ K++++ + +T + FV NN + P + R FS P Y++ +++ ++L
Sbjct: 501 LINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDQLTDEERILL 560
Query: 183 RLYDLGA 189
YD A
Sbjct: 561 LKYDSDA 567
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 124 LIGPQRTKQLVNGALILITVGGNDFV-NNYYLVPYSARSRQFSLPDYVKYVISEYRKLLT 182
LI P+ K++++ + +T + FV NN + P + R FS P Y++ +++ ++L
Sbjct: 500 LINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDQLTDEERILL 559
Query: 183 RLYDLGA 189
YD A
Sbjct: 560 LKYDSDA 566
>pdb|2AHX|A Chain A, Crystal Structure Of Erbb4HER4 EXTRACELLULAR DOMAIN
pdb|2AHX|B Chain B, Crystal Structure Of Erbb4HER4 EXTRACELLULAR DOMAIN
Length = 617
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 226 LYNPQLVQLVKDLNSQYGSEIFVAVNTGKMQYNFISNPRAF--GFTTSKVACCGQGPYNG 283
+YNP QL + N++Y + A K +NF+ + + +SK+ + NG
Sbjct: 243 VYNPTTFQLEHNFNAKY---TYGAFCVKKCPHNFVVDSSSCVRACPSSKM----EVEENG 295
Query: 284 LGLCTPASNLCP 295
+ +C P +++CP
Sbjct: 296 IKMCKPCTDICP 307
>pdb|3U9U|E Chain E, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
pdb|3U9U|F Chain F, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
Length = 625
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 226 LYNPQLVQLVKDLNSQYGSEIFVAVNTGKMQYNFISNPRAF--GFTTSKVACCGQGPYNG 283
+YNP QL + N++Y + A K +NF+ + + +SK+ + NG
Sbjct: 242 VYNPTTFQLEHNFNAKY---TYGAFCVKKCPHNFVVDSSSCVRACPSSKM----EVEENG 294
Query: 284 LGLCTPASNLCP 295
+ +C P +++CP
Sbjct: 295 IKMCKPCTDICP 306
>pdb|3U7U|A Chain A, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|B Chain B, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|C Chain C, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|D Chain D, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|E Chain E, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|F Chain F, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
Length = 615
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 226 LYNPQLVQLVKDLNSQYGSEIFVAVNTGKMQYNFISNPRAF--GFTTSKVACCGQGPYNG 283
+YNP QL + N++Y + A K +NF+ + + +SK+ + NG
Sbjct: 242 VYNPTTFQLEHNFNAKY---TYGAFCVKKCPHNFVVDSSSCVRACPSSKM----EVEENG 294
Query: 284 LGLCTPASNLCP 295
+ +C P +++CP
Sbjct: 295 IKMCKPCTDICP 306
>pdb|3U2P|A Chain A, Crystal Structure Of N-Terminal Three Extracellular
Domains Of Erbb4HER4
Length = 497
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 226 LYNPQLVQLVKDLNSQYGSEIFVAVNTGKMQYNFI--SNPRAFGFTTSKVACCGQGPYNG 283
+YNP QL + N++Y + A K +NF+ S+ +SK+ + NG
Sbjct: 242 VYNPTTFQLEHNFNAKY---TYGAFCVKKCPHNFVVDSSSCVRACPSSKM----EVEENG 294
Query: 284 LGLCTPASNLCP 295
+ +C P +++CP
Sbjct: 295 IKMCKPCTDICP 306
>pdb|3DTM|A Chain A, Increased Folding Stability Of Tem-1 Beta-Lactamase By In-
Vitro Selection
Length = 263
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 228 NPQLVQLVKDLNSQYGSE---IFVAVNTGKMQYNFISNPRAFGFTTSKVACCG 277
+P+ + VKD Q G+ I + +N+GK+ +F S R +T KV CG
Sbjct: 1 HPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRSEERFPMMSTFKVLLCG 53
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 232 VQLVKDLNSQYGSEIFVAVNTGKMQYNFISNPRAFGFTTSK---VACCGQGPYNGLGLCT 288
V + D NS S ++ +NTG++Q + N R FG+ + K + YN +G
Sbjct: 598 VLICGDFNSYINSAVYELINTGRVQIHQEGNGRDFGYMSEKNFSHNLALKSSYNCIGEL- 656
Query: 289 PASNLCPN 296
P +N P+
Sbjct: 657 PFTNFTPS 664
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 70 TGRFSNGLNIP-DFITNFASAGIGILNDTGIQFVNI----IRMFRQFEYFQEYQNR 120
T + NGL I ++I N +SA +GI D G + N+ F Q F+ QNR
Sbjct: 9 TSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLQHLAFKGTQNR 64
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 23/112 (20%)
Query: 94 LNDTGIQFVNIIRMFRQFEYFQEYQNRVTALIGPQRTKQLVNGA-----LILITVGG--- 145
+ND G R + + F + + T ++G Q K++V+ +IL+ G
Sbjct: 23 MNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV 82
Query: 146 NDFVNNYYLVPYSARSRQFSLPDYVKYVI----SEYRKLLTRLYDLGARRVL 193
+DF+ LVP L D +I SEYR R DL A+ +L
Sbjct: 83 DDFIEK--LVP---------LLDTGDIIIDGGNSEYRDTTRRCRDLKAKGIL 123
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 23/112 (20%)
Query: 94 LNDTGIQFVNIIRMFRQFEYFQEYQNRVTALIGPQRTKQLVNGA-----LILITVGG--- 145
+ND G R + + F + + T ++G Q K++V+ +IL+ G
Sbjct: 44 MNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV 103
Query: 146 NDFVNNYYLVPYSARSRQFSLPDYVKYVI----SEYRKLLTRLYDLGARRVL 193
+DF+ LVP L D +I SEYR R DL A+ +L
Sbjct: 104 DDFIEK--LVP---------LLDTGDIIIDGGNSEYRDTTRRCRDLKAKGIL 144
>pdb|1QGU|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QGU|D Chain D, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QH8|B Chain B, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QH8|D Chain D, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QH1|B Chain B, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
pdb|1QH1|D Chain D, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
pdb|1H1L|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
pdb|1H1L|D Chain D, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
Length = 519
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 199 PLGCVP----AERAMRGRNGQCAADLQRAADLYNPQLVQLVKDLNSQYGSEIFVAVNTGK 254
P+ CV + A+ G N LQ A+ LY P+++ + S +A G
Sbjct: 108 PIACVSDSMTEDAAVFGGNNNMNLGLQNASALYKPEIIAV---------STTCMAEVIGD 158
Query: 255 MQYNFISNPRAFGFTTSKVA 274
FI+N + GF S +A
Sbjct: 159 DLQAFIANAKKDGFVDSSIA 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,793,192
Number of Sequences: 62578
Number of extensions: 410213
Number of successful extensions: 737
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 18
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)