Query 019280
Match_columns 343
No_of_seqs 239 out of 2193
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:10:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.9 9.3E-27 2E-31 226.4 12.8 148 176-342 9-159 (557)
2 PHA02790 Kelch-like protein; P 99.9 9E-27 2E-31 223.3 11.8 145 180-342 10-156 (480)
3 KOG4441 Proteins containing BT 99.9 1.4E-25 3.1E-30 217.4 12.8 151 175-342 19-170 (571)
4 PHA03098 kelch-like protein; P 99.9 1.6E-25 3.4E-30 218.6 11.8 133 189-341 6-140 (534)
5 KOG4350 Uncharacterized conser 99.9 1.7E-25 3.7E-30 197.0 7.6 151 177-341 29-180 (620)
6 cd03780 MATH_TRAF5 Tumor Necro 99.9 9.2E-24 2E-28 168.9 12.9 131 24-158 1-148 (148)
7 cd03777 MATH_TRAF3 Tumor Necro 99.9 2.4E-23 5.3E-28 172.4 12.9 135 21-159 36-185 (186)
8 cd03774 MATH_SPOP Speckle-type 99.9 4.4E-23 9.5E-28 165.2 13.9 131 21-161 2-138 (139)
9 cd03779 MATH_TRAF1 Tumor Necro 99.9 8.5E-23 1.8E-27 162.5 12.6 130 24-158 1-147 (147)
10 cd03772 MATH_HAUSP Herpesvirus 99.9 1.7E-22 3.7E-27 161.3 13.4 126 23-161 2-134 (137)
11 cd03781 MATH_TRAF4 Tumor Necro 99.9 1E-22 2.2E-27 165.3 12.0 132 24-158 1-154 (154)
12 cd03771 MATH_Meprin Meprin fam 99.9 2.2E-22 4.7E-27 163.0 12.9 134 23-158 1-167 (167)
13 cd03776 MATH_TRAF6 Tumor Necro 99.9 8.3E-23 1.8E-27 165.0 10.4 131 24-158 1-147 (147)
14 cd00270 MATH_TRAF_C Tumor Necr 99.9 1.1E-22 2.4E-27 165.0 10.6 132 24-158 1-149 (149)
15 cd03773 MATH_TRIM37 Tripartite 99.9 3.3E-22 7.1E-27 158.9 12.3 125 22-158 3-130 (132)
16 cd03775 MATH_Ubp21p Ubiquitin- 99.9 5.1E-22 1.1E-26 157.8 12.6 118 25-158 2-134 (134)
17 cd03778 MATH_TRAF2 Tumor Necro 99.9 9.7E-21 2.1E-25 152.2 12.6 135 21-158 16-164 (164)
18 KOG4591 Uncharacterized conser 99.8 1.6E-20 3.6E-25 150.7 10.3 148 177-341 51-201 (280)
19 PF00651 BTB: BTB/POZ domain; 99.8 1.5E-20 3.2E-25 144.7 8.2 106 183-305 1-110 (111)
20 cd00121 MATH MATH (meprin and 99.8 4.5E-19 9.7E-24 139.2 13.1 120 24-158 1-126 (126)
21 KOG2075 Topoisomerase TOP1-int 99.8 8E-19 1.7E-23 158.6 11.3 154 170-340 92-252 (521)
22 cd03783 MATH_Meprin_Alpha Mepr 99.8 5.2E-18 1.1E-22 135.7 10.5 135 24-158 2-167 (167)
23 PF00917 MATH: MATH domain; I 99.7 1.5E-17 3.2E-22 129.5 11.1 113 30-159 1-119 (119)
24 cd03782 MATH_Meprin_Beta Mepri 99.7 3E-17 6.5E-22 130.5 11.3 134 23-158 1-167 (167)
25 smart00225 BTB Broad-Complex, 99.7 2E-17 4.4E-22 121.5 7.6 89 194-299 1-90 (90)
26 KOG4682 Uncharacterized conser 99.7 1.4E-16 3.1E-21 140.9 10.3 140 183-340 60-204 (488)
27 KOG0783 Uncharacterized conser 99.7 8.1E-17 1.8E-21 153.4 6.3 139 191-341 709-850 (1267)
28 smart00061 MATH meprin and TRA 99.6 2.4E-14 5.3E-19 106.5 9.4 89 26-135 2-95 (95)
29 KOG1987 Speckle-type POZ prote 99.5 2.2E-13 4.8E-18 123.2 10.8 216 28-336 8-231 (297)
30 COG5077 Ubiquitin carboxyl-ter 99.3 2E-12 4.4E-17 122.8 6.9 126 20-162 35-173 (1089)
31 KOG0783 Uncharacterized conser 99.0 1.2E-09 2.6E-14 105.2 7.7 125 174-301 536-684 (1267)
32 KOG2838 Uncharacterized conser 98.4 2.4E-07 5.2E-12 78.9 4.7 84 174-257 112-198 (401)
33 KOG0511 Ankyrin repeat protein 98.4 3.3E-07 7.2E-12 81.5 5.4 121 202-340 301-432 (516)
34 KOG2716 Polymerase delta-inter 98.4 2.2E-06 4.7E-11 72.8 9.4 95 195-305 7-104 (230)
35 KOG2838 Uncharacterized conser 98.2 1.5E-06 3.3E-11 74.1 4.7 137 177-315 220-397 (401)
36 PF02214 BTB_2: BTB/POZ domain 98.0 1.1E-05 2.4E-10 59.7 5.6 87 195-298 1-94 (94)
37 KOG3473 RNA polymerase II tran 97.5 0.00077 1.7E-08 48.4 8.2 86 192-290 15-111 (112)
38 PF11822 DUF3342: Domain of un 97.1 0.00092 2E-08 59.5 5.5 110 202-328 14-136 (317)
39 KOG2714 SETA binding protein S 97.1 0.0024 5.2E-08 58.5 7.8 92 194-301 12-110 (465)
40 smart00512 Skp1 Found in Skp1 96.6 0.0045 9.7E-08 46.5 5.3 94 195-291 4-104 (104)
41 KOG0511 Ankyrin repeat protein 96.5 0.001 2.2E-08 59.8 1.0 103 180-300 134-240 (516)
42 KOG1665 AFH1-interacting prote 96.5 0.0064 1.4E-07 50.9 5.5 92 194-301 10-106 (302)
43 KOG1863 Ubiquitin carboxyl-ter 96.4 0.0056 1.2E-07 64.7 5.8 119 26-161 29-153 (1093)
44 KOG0297 TNF receptor-associate 96.2 0.0034 7.5E-08 58.7 3.0 79 20-99 276-365 (391)
45 PF03931 Skp1_POZ: Skp1 family 96.1 0.026 5.7E-07 37.9 6.1 56 195-252 3-59 (62)
46 KOG1724 SCF ubiquitin ligase, 94.9 0.092 2E-06 42.6 6.4 114 200-315 13-139 (162)
47 KOG1778 CREB binding protein/P 94.6 0.016 3.4E-07 52.2 1.4 129 194-338 28-158 (319)
48 KOG2715 Uncharacterized conser 94.2 0.18 4E-06 40.4 6.3 96 193-305 21-121 (210)
49 COG5201 SKP1 SCF ubiquitin lig 93.8 0.56 1.2E-05 35.9 8.0 112 194-307 3-123 (158)
50 PF01466 Skp1: Skp1 family, di 90.4 0.53 1.1E-05 33.2 4.2 49 277-325 14-65 (78)
51 KOG2723 Uncharacterized conser 87.0 2.2 4.8E-05 36.4 6.4 95 191-301 6-105 (221)
52 PF07707 BACK: BTB And C-termi 81.1 4.7 0.0001 29.5 5.4 59 280-338 2-74 (103)
53 KOG3840 Uncharaterized conserv 80.6 4 8.7E-05 36.3 5.4 87 189-291 92-184 (438)
54 PF00651 BTB: BTB/POZ domain; 78.7 2.9 6.4E-05 31.0 3.7 31 307-337 80-110 (111)
55 PHA02713 hypothetical protein; 64.2 16 0.00034 36.3 5.9 35 305-339 90-124 (557)
56 smart00875 BACK BTB And C-term 62.2 24 0.00052 25.3 5.4 25 281-305 3-27 (101)
57 PHA03098 kelch-like protein; P 62.1 9.5 0.00021 37.5 4.0 35 305-339 72-106 (534)
58 PF11822 DUF3342: Domain of un 60.8 1.8 3.9E-05 39.0 -1.2 39 304-342 70-108 (317)
59 KOG2075 Topoisomerase TOP1-int 58.7 13 0.00028 35.4 3.9 36 305-340 184-219 (521)
60 PHA02790 Kelch-like protein; P 52.2 13 0.00028 36.1 3.0 35 305-339 87-121 (480)
61 KOG4682 Uncharacterized conser 41.3 21 0.00046 33.2 2.4 27 279-305 175-201 (488)
62 PF09593 Pathogen_betaC1: Beta 40.2 52 0.0011 25.1 3.9 57 200-259 20-81 (117)
63 KOG4441 Proteins containing BT 33.4 48 0.001 33.0 3.7 34 305-338 101-134 (571)
64 PF02519 Auxin_inducible: Auxi 28.4 1.2E+02 0.0027 22.4 4.3 54 194-250 40-99 (100)
65 PF01466 Skp1: Skp1 family, di 27.6 1.9E+02 0.0042 20.0 5.0 38 300-339 7-44 (78)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.94 E-value=9.3e-27 Score=226.36 Aligned_cols=148 Identities=18% Similarity=0.248 Sum_probs=137.9
Q ss_pred cccHHHHHHHchhcCCCCcEEEEeC-CeeEEeeehhhhccCHhHHhhcCCccccc--cceEEecCCCHHHHHHHhhhhcc
Q 019280 176 ESDIGAHFGMLLDNAESSDITFDVA-GEKFPAHKLVLAARSPIFRSKFFDELEED--KQEIIISDLEPKVFKAMLHFIYR 252 (343)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~Dv~~~v~-~~~~~~hk~iL~~~S~~F~~~~~~~~~e~--~~~i~l~~~~~~~~~~~L~~iY~ 252 (343)
...+++.|.+|+.++.++||+|.|+ |++|+|||.|||++|+||++||.++|+|. +.+|.|.++++++|+.+|+|+||
T Consensus 9 ~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt 88 (557)
T PHA02713 9 NRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYN 88 (557)
T ss_pred hHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcC
Confidence 3567899999999999999999998 89999999999999999999999999975 78999999999999999999999
Q ss_pred CCCCCCCCCCcCCCCCCCCCcchHHHHHHHHHHHhhhChHhHHHHHHHHHhccCChhhHHHHHHHHhhcCchHHHHHHHH
Q 019280 253 DTLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLR 332 (343)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~l~~a~~~~~~~L~~~~~~ 332 (343)
+.+ +.++ +++||.+|++|+++.|++.|++||.+.++.+||+.++..|..+.+..|.+.|.+
T Consensus 89 ~~i--~~~n-----------------v~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~ 149 (557)
T PHA02713 89 RHI--SSMN-----------------VIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKR 149 (557)
T ss_pred CCC--CHHH-----------------HHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHH
Confidence 974 4443 999999999999999999999999999999999999999999999899999999
Q ss_pred HHHhcccCCC
Q 019280 333 FAAENLAGTD 342 (343)
Q Consensus 333 ~i~~~~~~v~ 342 (343)
||.+||.+|.
T Consensus 150 ~i~~~f~~v~ 159 (557)
T PHA02713 150 MLMSNIPTLI 159 (557)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 2
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=9e-27 Score=223.26 Aligned_cols=145 Identities=16% Similarity=0.201 Sum_probs=132.9
Q ss_pred HHHHHHchhcCCCCcEEEEeCCeeEEeeehhhhccCHhHHhhcCCccccccceEEe--cCCCHHHHHHHhhhhccCCCCC
Q 019280 180 GAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIII--SDLEPKVFKAMLHFIYRDTLTE 257 (343)
Q Consensus 180 ~~~~~~l~~~~~~~Dv~~~v~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~i~l--~~~~~~~~~~~L~~iY~~~~~~ 257 (343)
.+++..+..++.++||++.+ |++|+|||.|||+.||||++||.++|+|++.+|.+ .++++++++.+|+|+|||++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~i 88 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVYI 88 (480)
T ss_pred hhhHHHHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEEE
Confidence 35677777889999998855 55999999999999999999999999998334555 3999999999999999999998
Q ss_pred CCCCCcCCCCCCCCCcchHHHHHHHHHHHhhhChHhHHHHHHHHHhccCChhhHHHHHHHHhhcCchHHHHHHHHHHHhc
Q 019280 258 DVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAEN 337 (343)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~ 337 (343)
+.+| +++||.+|+.++++.|++.|++||.+.++++||+.++.+|+.|++.+|++.|.+||.+|
T Consensus 89 t~~n-----------------V~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~n 151 (480)
T PHA02790 89 DSHN-----------------VVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKH 151 (480)
T ss_pred eccc-----------------HHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 8886 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 019280 338 LAGTD 342 (343)
Q Consensus 338 ~~~v~ 342 (343)
|.+|.
T Consensus 152 F~~v~ 156 (480)
T PHA02790 152 FLELE 156 (480)
T ss_pred HHHHh
Confidence 98763
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.93 E-value=1.4e-25 Score=217.38 Aligned_cols=151 Identities=26% Similarity=0.395 Sum_probs=145.0
Q ss_pred CcccHHHHHHHchhcCCCCcEEEEeCCeeEEeeehhhhccCHhHHhhcCCccccc-cceEEecCCCHHHHHHHhhhhccC
Q 019280 175 PESDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVFKAMLHFIYRD 253 (343)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~Dv~~~v~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~~~~L~~iY~~ 253 (343)
....+.+.++.+++.+.++||++.+++++|+|||.||||.||||++||.++++|+ +.+|.|.++++.+++.+|+|+||+
T Consensus 19 h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~ 98 (571)
T KOG4441|consen 19 HSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTG 98 (571)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcc
Confidence 3466788999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCCCCCCcCCCCCCCCCcchHHHHHHHHHHHhhhChHhHHHHHHHHHhccCChhhHHHHHHHHhhcCchHHHHHHHHH
Q 019280 254 TLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRF 333 (343)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~l~~a~~~~~~~L~~~~~~~ 333 (343)
.+.++..| +++||.+|+.||++.+++.|.+||.+.++++||+.+..+|+.|++.+|.+.+-.|
T Consensus 99 ~i~i~~~n-----------------Vq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~ 161 (571)
T KOG4441|consen 99 KLEISEDN-----------------VQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEY 161 (571)
T ss_pred eEEechHh-----------------HHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 99988876 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCC
Q 019280 334 AAENLAGTD 342 (343)
Q Consensus 334 i~~~~~~v~ 342 (343)
+..||.+|.
T Consensus 162 i~~~F~~v~ 170 (571)
T KOG4441|consen 162 ILQHFAEVS 170 (571)
T ss_pred HHHHHHHHh
Confidence 999998764
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.92 E-value=1.6e-25 Score=218.57 Aligned_cols=133 Identities=17% Similarity=0.272 Sum_probs=126.8
Q ss_pred cCCCCcEEEEe--CCeeEEeeehhhhccCHhHHhhcCCccccccceEEecCCCHHHHHHHhhhhccCCCCCCCCCCcCCC
Q 019280 189 NAESSDITFDV--AGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATP 266 (343)
Q Consensus 189 ~~~~~Dv~~~v--~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~ 266 (343)
++.+|||+|.+ +|++|+|||.||+++|+||++||.++++ +.+|.|.+ ++++|+.+|+|+|||++.++.++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~----- 77 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-DYDSFNEVIKYIYTGKINITSNN----- 77 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-CHHHHHHHHHHhcCCceEEcHHH-----
Confidence 78899999998 9999999999999999999999998887 57899999 99999999999999999887765
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhChHhHHHHHHHHHhccCChhhHHHHHHHHhhcCchHHHHHHHHHHHhcccCC
Q 019280 267 SSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAENLAGT 341 (343)
Q Consensus 267 ~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v 341 (343)
+.+||.+|++|+++.|+..|+++|.+.++.+||+.++.+|..|++..|++.|.+||.+||.+|
T Consensus 78 ------------~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v 140 (534)
T PHA03098 78 ------------VKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELI 140 (534)
T ss_pred ------------HHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998765
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.92 E-value=1.7e-25 Score=197.02 Aligned_cols=151 Identities=27% Similarity=0.463 Sum_probs=141.2
Q ss_pred ccHHHHHHHchhcCCCCcEEEEeCCeeEEeeehhhhccCHhHHhhcCCccccc-cceEEecCCCHHHHHHHhhhhccCCC
Q 019280 177 SDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVFKAMLHFIYRDTL 255 (343)
Q Consensus 177 ~~~~~~~~~l~~~~~~~Dv~~~v~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~~~~L~~iY~~~~ 255 (343)
..+.+++.+++.+++.+||+|+|++++|+|||.|||+||.||++|+.++|+|+ +..|++.+...++|+.+|+|||||++
T Consensus 29 ~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~ 108 (620)
T KOG4350|consen 29 NNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKI 108 (620)
T ss_pred cchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcce
Confidence 45678999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCCCCCcCCCCCCCCCcchHHHHHHHHHHHhhhChHhHHHHHHHHHhccCChhhHHHHHHHHhhcCchHHHHHHHHHHH
Q 019280 256 TEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAA 335 (343)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~l~~a~~~~~~~L~~~~~~~i~ 335 (343)
.....+ .+...+.|.+|++|++..|.....+||.+-+..+|++.++..|..|++.+|...|+.|+-
T Consensus 109 ~l~~~~--------------ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmD 174 (620)
T KOG4350|consen 109 DLAGVE--------------EDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMD 174 (620)
T ss_pred ecccch--------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHh
Confidence 876553 455899999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCC
Q 019280 336 ENLAGT 341 (343)
Q Consensus 336 ~~~~~v 341 (343)
+|-.++
T Consensus 175 rnA~~l 180 (620)
T KOG4350|consen 175 RNADQL 180 (620)
T ss_pred cCHHhh
Confidence 886543
No 6
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.91 E-value=9.2e-24 Score=168.93 Aligned_cols=131 Identities=27% Similarity=0.432 Sum_probs=103.1
Q ss_pred eEEEEEEcCcccccc-CCCCC--eEeeccc--ccCCeeEEEEEEcCCCCCCCCCCeEEEEEEeeCC------CceeEEEE
Q 019280 24 GSHKFVIQGYSLAKG-MGIGK--HIASDNF--TVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTDVRALF 92 (343)
Q Consensus 24 ~~~~w~I~~fs~~~~-~~~~~--~~~S~~f--~~gg~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~------~w~~~~~~ 92 (343)
|.++|+|++|+.+++ +..|+ .+.|++| .++||+|+|++||||.+. +.++|+|+||.+..+ .|++.+++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~-~~~~~iSv~l~l~~g~~D~~l~wp~~~~~ 79 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGS-GKGTHLSLYFVVMRGEFDSLLQWPFRQRV 79 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCC-CCCCEEEEEEEEecCccccccCcceEEEE
Confidence 579999999999874 56777 8999999 899999999999999884 368899999999875 59999999
Q ss_pred EEEEecCCCCCccceecccccccccCCeeeccc----CcccccccccchhccccC--cCCCCCcEEEEEeee
Q 019280 93 ELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYR----GSMWGYKRFFRRAMLETS--DYLKDDCLKINCTVG 158 (343)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----~~~~G~~~fi~~~~L~~~--~yl~~d~l~i~~~v~ 158 (343)
+|+|+||.+++.+.... +.. ......|... +..||+.+|+++++|+++ +|+.||++.|+|.|.
T Consensus 80 tfsLlDq~~~~~~~~~~-~~~--~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v~ 148 (148)
T cd03780 80 TLMLLDQSGKKNHIMET-FKA--DPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAVD 148 (148)
T ss_pred EEEEECCCCCCCCccee-eec--CCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEEC
Confidence 99999998654431111 000 0011234322 457999999999999864 999999999999873
No 7
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.90 E-value=2.4e-23 Score=172.37 Aligned_cols=135 Identities=24% Similarity=0.382 Sum_probs=105.0
Q ss_pred eeceEEEEEEcCcccccc-CCCCC--eEeecccccC--CeeEEEEEEcCCCCCCCCCCeEEEEEEeeCC------CceeE
Q 019280 21 TVNGSHKFVIQGYSLAKG-MGIGK--HIASDNFTVG--GYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTDVR 89 (343)
Q Consensus 21 ~~~~~~~w~I~~fs~~~~-~~~~~--~~~S~~f~~g--g~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~------~w~~~ 89 (343)
...|+|+|+|++|+..++ +..|+ .+.||+|++| ||+|+|++||||.+.+ .++|+|+||.+.++ .|++.
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~-~~~~iSvyl~L~~ge~D~~L~WP~~ 114 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMG-KGTHLSLFFVIMRGEYDALLPWPFK 114 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCC-CCCEEEEEEEEecCCcccccCCcee
Confidence 446999999999998864 55666 8999999999 9999999999998843 68899999999874 59999
Q ss_pred EEEEEEEecCCCCCccceecccccccccCCeeec-cc---CcccccccccchhccccCcCCCCCcEEEEEeeee
Q 019280 90 ALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLK-YR---GSMWGYKRFFRRAMLETSDYLKDDCLKINCTVGV 159 (343)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~---~~~~G~~~fi~~~~L~~~~yl~~d~l~i~~~v~i 159 (343)
++++|+|+||.+...+. ...+...- ....|. +. +..||++.|+++++|+.++|++||++.|+|.|..
T Consensus 115 ~~~tfsLlDQ~~~~~~~-~~~~~p~p--~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 115 QKVTLMLMDQGSSRRHL-GDAFKPDP--NSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT 185 (186)
T ss_pred EEEEEEEEcCCCccccc-cceeccCC--ccccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEec
Confidence 99999999997632221 11110000 012232 11 4479999999999999899999999999998863
No 8
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.90 E-value=4.4e-23 Score=165.24 Aligned_cols=131 Identities=29% Similarity=0.625 Sum_probs=106.2
Q ss_pred eeceEEEEEEcCccccccCCCCCeEeecccccCC---eeEEEEEEcCCCCCCCCCCeEEEEEEeeC-CCceeEEEEEEEE
Q 019280 21 TVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGG---YQWAIYFYPDGKNPEDNSAYVSVFIALAN-EGTDVRALFELTL 96 (343)
Q Consensus 21 ~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~gg---~~W~L~v~p~g~~~~~~~~~lsl~l~~~~-~~w~~~~~~~~~l 96 (343)
+...+|.|+|+|||.+++ +.|+.+.|+.|.+|| ++|+|++||+|...+ +.+|+||||.+.+ ..+++.|+|+++|
T Consensus 2 ~~~~~~~w~I~~fS~~~~-~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~-~~~~iSlyL~l~~~~~~~v~a~f~~~l 79 (139)
T cd03774 2 VVKFCYMWTISNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEE-SKDYLSLYLLLVSCPKSEVRAKFKFSI 79 (139)
T ss_pred ceEEEEEEEECCchhhhh-cCCCEEECCCeecCCcCCceEEEEEeCCCCCCC-CCCeEEEEEEEccCCCCcEEEEEEEEE
Confidence 567899999999999876 568899999999998 499999999998633 6789999999876 4578999999999
Q ss_pred ecCCCCCccceecccccccccCCeeecccCcccccccccchhccc--cCcCCCCCcEEEEEeeeeee
Q 019280 97 LDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE--TSDYLKDDCLKINCTVGVVV 161 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~--~~~yl~~d~l~i~~~v~i~~ 161 (343)
+|+.+....... ....+.|. ....|||.+|+++++|. .++|+.||+++|+|+|.|+.
T Consensus 80 ~n~~~~~~~~~~-------~~~~~~f~-~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 80 LNAKGEETKAME-------SQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EecCCCeeeeec-------ccCcEeCC-CCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 999876432110 11224454 35689999999999994 56899999999999999864
No 9
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.89 E-value=8.5e-23 Score=162.49 Aligned_cols=130 Identities=23% Similarity=0.369 Sum_probs=100.1
Q ss_pred eEEEEEEcCcccccc-C--CCCCeEeecccccC--CeeEEEEEEcCCCCCCCCCCeEEEEEEeeCC------CceeEEEE
Q 019280 24 GSHKFVIQGYSLAKG-M--GIGKHIASDNFTVG--GYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTDVRALF 92 (343)
Q Consensus 24 ~~~~w~I~~fs~~~~-~--~~~~~~~S~~f~~g--g~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~------~w~~~~~~ 92 (343)
|.++|+|++|+...+ . +....+.||+|+.+ ||+|+|++||||.+.+ .++|+|+||.+..+ .|++.+++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~-~~~~iSv~l~l~~g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAG-KGTHISLFFVIMKGEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCC-CCCEEEEEEEEecCCcccccCcceEEEE
Confidence 579999999986543 3 23447999999976 9999999999998844 68899999999874 59999999
Q ss_pred EEEEecCCCCCccceecccccccccCCeeec----ccCcccccccccchhccccC--cCCCCCcEEEEEeee
Q 019280 93 ELTLLDQSGKGKHKVHSHFDRSLESGPYTLK----YRGSMWGYKRFFRRAMLETS--DYLKDDCLKINCTVG 158 (343)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~----~~~~~~G~~~fi~~~~L~~~--~yl~~d~l~i~~~v~ 158 (343)
+|+|+||.+.+..... +.... ....|. ..+..||+.+|+++++|+.+ +|+.||++.|+|+|.
T Consensus 80 tfsLlDq~~~~~~~~~--~~~~~--~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 80 TFMLLDQNNREHVIDA--FRPDL--SSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEEECCCCCCCCcEe--ecCCc--ccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 9999999865432111 11100 012343 33457999999999999876 999999999999884
No 10
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.89 E-value=1.7e-22 Score=161.34 Aligned_cols=126 Identities=13% Similarity=0.258 Sum_probs=101.9
Q ss_pred ceEEEEEEcCccccccCCCCCeEeecccccCCeeEEEEEEcCCCCCC-CCCCeEEEEEEeeC----CCceeEEEEEEEEe
Q 019280 23 NGSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPE-DNSAYVSVFIALAN----EGTDVRALFELTLL 97 (343)
Q Consensus 23 ~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~gg~~W~L~v~p~g~~~~-~~~~~lsl~l~~~~----~~w~~~~~~~~~l~ 97 (343)
.++|.|+|+||+.+ ++.++|+.|.+||++|+|.+||+|...+ +..+|+||||.|.. .+|.+.|+|+++|+
T Consensus 2 ~~~~~~~I~~~S~l-----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~ 76 (137)
T cd03772 2 EATFSFTVERFSRL-----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRII 76 (137)
T ss_pred CcEEEEEECCcccC-----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEE
Confidence 47899999999998 3789999999999999999999996532 24589999999965 24999999999999
Q ss_pred cCCCCCccceecccccccccCCeeecccCcccccccccchhccc--cCcCCCCCcEEEEEeeeeee
Q 019280 98 DQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE--TSDYLKDDCLKINCTVGVVV 161 (343)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~--~~~yl~~d~l~i~~~v~i~~ 161 (343)
|+.+...... . ...+.|......|||++|++|++|. .++||.||+++|+|+|.+..
T Consensus 77 ~~~~~~~~~~-~-------~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 77 NYKDDEPSFS-R-------RISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred cCCCCcccEE-E-------eeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 9985332211 0 1224565566789999999999994 58999999999999998754
No 11
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.89 E-value=1e-22 Score=165.33 Aligned_cols=132 Identities=22% Similarity=0.328 Sum_probs=102.5
Q ss_pred eEEEEEEcCccccccC---CCCCeEeecccccC--CeeEEEEEEcCCCCCCCCCCeEEEEEEeeCC------CceeEEEE
Q 019280 24 GSHKFVIQGYSLAKGM---GIGKHIASDNFTVG--GYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTDVRALF 92 (343)
Q Consensus 24 ~~~~w~I~~fs~~~~~---~~~~~~~S~~f~~g--g~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~------~w~~~~~~ 92 (343)
|.|+|+|++|+.++++ +.|+.+.|+.|.+| ||+|+|++||||...+ .++|+|+||.+.++ .|++.+++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~-~~~~vs~~l~l~~ge~d~~l~wp~~a~~ 79 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSG-EGSHLSVYIRVLPGEYDNLLEWPFSHRI 79 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCC-CCCEEEEEEEEecCCcccccCCceeeEE
Confidence 5799999999988763 35789999999999 9999999999998743 67899999999873 69999999
Q ss_pred EEEEecCCCCC--cc-ceecccccccccCCeeec--------ccCcccccccccchhccccCcCCCCCcEEEEEeee
Q 019280 93 ELTLLDQSGKG--KH-KVHSHFDRSLESGPYTLK--------YRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVG 158 (343)
Q Consensus 93 ~~~l~~~~~~~--~~-~~~~~~~~~~~~~~~~f~--------~~~~~~G~~~fi~~~~L~~~~yl~~d~l~i~~~v~ 158 (343)
+++|+||.+.. .. .+...+... .....|. ..+..||+..|+++++|+.++||.||+++|+|+|+
T Consensus 80 ~~~llDq~~~~~~~~~~~~~~~~~~--~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 80 TFTLLDQSDPSLSKPQHITETFTPD--PTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEEECCCCCccccCcceEEEEEcC--CchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEeC
Confidence 99999998641 11 110111000 0112232 23457999999999999989999999999999884
No 12
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.89 E-value=2.2e-22 Score=163.05 Aligned_cols=134 Identities=25% Similarity=0.432 Sum_probs=101.4
Q ss_pred ceEEEEEEcCccccc-cCCCCCeEeeccc-ccCCeeEEEEEEcCCCCCCCCCCeEEEEEEeeCC------Cce-eEEEEE
Q 019280 23 NGSHKFVIQGYSLAK-GMGIGKHIASDNF-TVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTD-VRALFE 93 (343)
Q Consensus 23 ~~~~~w~I~~fs~~~-~~~~~~~~~S~~f-~~gg~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~------~w~-~~~~~~ 93 (343)
+..|+|+|+|||.++ +++.|+.+.||+| .+|||+|+|++||||... .++|+||||++.++ .|+ +.++++
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~--~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t 78 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES--YPGYTGLYFHLCSGENDDVLEWPCPNRQAT 78 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC--CCCcceEEEEEecCCccccccCcceeEEEE
Confidence 467999999999986 6788999999999 899999999999999874 67899999999763 388 589999
Q ss_pred EEEecCCCCCccceec--ccc--ccccc---CCee----------ec-------ccCcccccccccchhccccCcCCCCC
Q 019280 94 LTLLDQSGKGKHKVHS--HFD--RSLES---GPYT----------LK-------YRGSMWGYKRFFRRAMLETSDYLKDD 149 (343)
Q Consensus 94 ~~l~~~~~~~~~~~~~--~~~--~~~~~---~~~~----------f~-------~~~~~~G~~~fi~~~~L~~~~yl~~d 149 (343)
++|+||..+...+.+. .+. .+..+ +... .. .++.+|||+.|+++++|+.+.||+||
T Consensus 79 ~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk~d 158 (167)
T cd03771 79 MTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLKGD 158 (167)
T ss_pred EEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCcCC
Confidence 9999997422221111 111 10000 0000 11 14458999999999999888899999
Q ss_pred cEEEEEeee
Q 019280 150 CLKINCTVG 158 (343)
Q Consensus 150 ~l~i~~~v~ 158 (343)
++.|+++++
T Consensus 159 tl~i~~~~~ 167 (167)
T cd03771 159 DLIILLDFE 167 (167)
T ss_pred EEEEEEEeC
Confidence 999998874
No 13
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.89 E-value=8.3e-23 Score=165.02 Aligned_cols=131 Identities=23% Similarity=0.311 Sum_probs=100.4
Q ss_pred eEEEEEEcCcccccc-CCCCCe--Eeeccccc--CCeeEEEEEEcCCCCCCCCCCeEEEEEEeeCC------CceeEEEE
Q 019280 24 GSHKFVIQGYSLAKG-MGIGKH--IASDNFTV--GGYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTDVRALF 92 (343)
Q Consensus 24 ~~~~w~I~~fs~~~~-~~~~~~--~~S~~f~~--gg~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~------~w~~~~~~ 92 (343)
|+|+|+|++|+.+++ ++.|+. +.|++|.+ |||+|+|++||||... +..+|+|+||.+.++ +|++.+++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~-~~~~~lS~~L~l~~~~~d~~l~wpv~a~~ 79 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEA-RCPNYISLFVHLMQGENDSHLDWPFQGTI 79 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCC-CCCCEEEEEEEEeccCCCcccCCccccee
Confidence 589999999997654 677774 88999985 7999999999999874 367899999998653 49999999
Q ss_pred EEEEecCCCCCccceecccccccccCCeeec-----ccCcccccccccchhccccCcCCCCCcEEEEEeee
Q 019280 93 ELTLLDQSGKGKHKVHSHFDRSLESGPYTLK-----YRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVG 158 (343)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~-----~~~~~~G~~~fi~~~~L~~~~yl~~d~l~i~~~v~ 158 (343)
+|+|+||.+...+.... +.. ......|. ..+..|||.+|+++++|+.++||.||+++|+|+|.
T Consensus 80 ~~~lldq~~~~~~~~~~-~~~--~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 80 TLTLLDQSEPRQNIHET-MMS--KPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEEECCCcccCccEEE-EEc--CCChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 99999998743321100 000 00112232 13457999999999999988999999999999983
No 14
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.88 E-value=1.1e-22 Score=165.04 Aligned_cols=132 Identities=27% Similarity=0.406 Sum_probs=100.8
Q ss_pred eEEEEEEcCcccccc---CCCCCeEeecccccC--CeeEEEEEEcCCCCCCCCCCeEEEEEEeeCC------CceeEEEE
Q 019280 24 GSHKFVIQGYSLAKG---MGIGKHIASDNFTVG--GYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTDVRALF 92 (343)
Q Consensus 24 ~~~~w~I~~fs~~~~---~~~~~~~~S~~f~~g--g~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~------~w~~~~~~ 92 (343)
|+|+|+|++|+.+++ .+.++.+.|+.|.+| ||+|+|++||+|...+ .++|+||||++.++ +|++.+++
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~-~~~~lsl~L~l~~~~~d~~~~w~~~~~~ 79 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTG-KGTHLSLFVHVMKGEYDALLEWPFRGKI 79 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCC-CCCEEEEEEEEeccCCCccccCCccceE
Confidence 589999999999876 256789999999999 9999999999998633 56899999998643 49999999
Q ss_pred EEEEecCCCCCccce-ecccccccccCCeeec-----ccCcccccccccchhccccCcCCCCCcEEEEEeee
Q 019280 93 ELTLLDQSGKGKHKV-HSHFDRSLESGPYTLK-----YRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVG 158 (343)
Q Consensus 93 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~f~-----~~~~~~G~~~fi~~~~L~~~~yl~~d~l~i~~~v~ 158 (343)
+|+|+|+.++...+. ...+... .....|. .....|||.+|+++++|+.++||.||+++|+|+|.
T Consensus 80 ~~~l~d~~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 80 TLTLLDQSDDSKRKHITETFMPD--PNSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEEECCCCccccCceEEEEEcC--CchHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEEC
Confidence 999999987411111 0000000 0011222 23567999999999999878999999999999984
No 15
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.88 E-value=3.3e-22 Score=158.87 Aligned_cols=125 Identities=26% Similarity=0.519 Sum_probs=100.0
Q ss_pred eceEEEEEEcCccccccCCCCCeEeecccccCCeeEEEEEEcCCCCCCCCCCeEEEEEEeeCC-CceeEEEEEEEEecCC
Q 019280 22 VNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANE-GTDVRALFELTLLDQS 100 (343)
Q Consensus 22 ~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~gg~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~-~w~~~~~~~~~l~~~~ 100 (343)
..++++|+|+|||.+++ .|+.+.|+.|.+||++|+|.+||+|... +.++|+|+||.+... .|.+.++|+++|+|+.
T Consensus 3 ~~~~~~~~I~~fS~~~~--~~~~~~S~~F~vgG~~W~i~~yP~G~~~-~~~~~lSl~L~l~~~~~~~~~~~~~l~llnq~ 79 (132)
T cd03773 3 PYDSATFTLENFSTLRQ--SADPVYSDPLNVDGLCWRLKVYPDGNGE-VRGNFLSVFLELCSGLGEASKYEYRVEMVHQA 79 (132)
T ss_pred CCcccEEEECChhhhhc--CCcceeCCCeEeCCccEEEEEECCCCCC-CCCCEEEEEEEeecCCCCceeEEEEEEEEcCC
Confidence 34679999999999864 5789999999999999999999999873 357899999998764 5788899999999995
Q ss_pred CCCccceecccccccccCCeeecccCcccccccccchhccccCcCCCC--CcEEEEEeee
Q 019280 101 GKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDYLKD--DCLKINCTVG 158 (343)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~yl~~--d~l~i~~~v~ 158 (343)
+...+.. .. ..+.|.. +..|||.+|+++++|.++|||.| |+++|+|.|+
T Consensus 80 ~~~~~~~-~~-------~~~~f~~-~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 80 NPTKNIK-RE-------FASDFEV-GECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCccceE-Ee-------ccccccC-CCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence 3322211 11 1233432 45799999999999987899999 9999999986
No 16
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.88 E-value=5.1e-22 Score=157.82 Aligned_cols=118 Identities=25% Similarity=0.471 Sum_probs=96.8
Q ss_pred EEEEEEcCccccccCCCCCeEeecccccCCeeEEEEEEcCCCCCCCCCCeEEEEEEeeC---------CCceeEEEEEEE
Q 019280 25 SHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALAN---------EGTDVRALFELT 95 (343)
Q Consensus 25 ~~~w~I~~fs~~~~~~~~~~~~S~~f~~gg~~W~L~v~p~g~~~~~~~~~lsl~l~~~~---------~~w~~~~~~~~~ 95 (343)
+|+|+|+|||.+ ++.+.|+.|.+|||+|+|.+||+|... .+|+||||.+.+ .+|.+.|+|++.
T Consensus 2 ~f~w~I~~fS~~-----~~~~~S~~F~vGG~~W~l~~yP~G~~~---~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~ 73 (134)
T cd03775 2 SFTWRIKNWSEL-----EKKVHSPKFKCGGFEWRILLFPQGNSQ---TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALV 73 (134)
T ss_pred cEEEEECCcccC-----CcceeCCCEEECCeeEEEEEeCCCCCC---CCeEEEEEEecCcccccccCCCCCeEEEEEEEE
Confidence 589999999995 378999999999999999999999763 689999999853 358899999999
Q ss_pred EecCCCCCccceecccccccccCCeeecccCcccccccccchhccc------cCcCCCCCcEEEEEeee
Q 019280 96 LLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE------TSDYLKDDCLKINCTVG 158 (343)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~------~~~yl~~d~l~i~~~v~ 158 (343)
|+|+.+...... ....+.|......|||.+|+++++|. ++|||.||+++|++.|.
T Consensus 74 l~n~~~~~~~~~--------~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 74 ISNPGDPSIQLS--------NVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred EEcCCCCccceE--------ccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 999964332111 11246676667789999999999996 47999999999998873
No 17
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.85 E-value=9.7e-21 Score=152.18 Aligned_cols=135 Identities=21% Similarity=0.282 Sum_probs=100.4
Q ss_pred eeceEEEEEEcCccccccC---CCCCeEeeccccc--CCeeEEEEEEcCCCCCCCCCCeEEEEEEeeCC------CceeE
Q 019280 21 TVNGSHKFVIQGYSLAKGM---GIGKHIASDNFTV--GGYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTDVR 89 (343)
Q Consensus 21 ~~~~~~~w~I~~fs~~~~~---~~~~~~~S~~f~~--gg~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~------~w~~~ 89 (343)
...|.|+|+|.+|+.+.+- +....+.||+|+. +||+|+|++||||++ .+.+.|+|||+++.++ .|++.
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g-~~~g~~LSly~~l~~Ge~D~~L~WPf~ 94 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN 94 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEecCCcCcccCCcee
Confidence 4569999999999976642 3345899999986 489999999999987 4478899999999874 39999
Q ss_pred EEEEEEEecCCCCCccceecccccccc--cCCeeecccCcccccccccchhcccc-CcCCCCCcEEEEEeee
Q 019280 90 ALFELTLLDQSGKGKHKVHSHFDRSLE--SGPYTLKYRGSMWGYKRFFRRAMLET-SDYLKDDCLKINCTVG 158 (343)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~G~~~fi~~~~L~~-~~yl~~d~l~i~~~v~ 158 (343)
.+++++|+||++.... ...+..... +.....+..+..|||+.|+++++|.. ++|++||++.|+|.|.
T Consensus 95 ~~itl~llDQ~~r~hi--~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~Vd 164 (164)
T cd03778 95 QKVTLMLLDQNNREHV--IDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIVD 164 (164)
T ss_pred eEEEEEEECCCCCCcc--eeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEEC
Confidence 9999999999743221 111111111 11001123345799999999999965 7999999999999873
No 18
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.84 E-value=1.6e-20 Score=150.73 Aligned_cols=148 Identities=30% Similarity=0.454 Sum_probs=129.9
Q ss_pred ccHHHHHHHchhcCCCCcEEEEeCC---eeEEeeehhhhccCHhHHhhcCCccccccceEEecCCCHHHHHHHhhhhccC
Q 019280 177 SDIGAHFGMLLDNAESSDITFDVAG---EKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRD 253 (343)
Q Consensus 177 ~~~~~~~~~l~~~~~~~Dv~~~v~~---~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~i~l~~~~~~~~~~~L~~iY~~ 253 (343)
+.++.-...+++.++++|++|.++| +.++|||+|||+||.++. |.+.-.|.+.+..++|+++++|..+|+||||+
T Consensus 51 SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad~Ea~~t~iRWIYTD 128 (280)
T KOG4591|consen 51 SRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDADFEAFHTAIRWIYTD 128 (280)
T ss_pred HHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccCHHHHHHhheeeecc
Confidence 5556666788999999999999984 789999999999999876 32222233667888999999999999999999
Q ss_pred CCCCCCCCCcCCCCCCCCCcchHHHHHHHHHHHhhhChHhHHHHHHHHHhccCChhhHHHHHHHHhhcCchHHHHHHHHH
Q 019280 254 TLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRF 333 (343)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~l~~a~~~~~~~L~~~~~~~ 333 (343)
++..-.+ ..++.++.++|++|+++.|++.|++-+...+.++||+.++++|++.++.+|...|.+.
T Consensus 129 Eidfk~d---------------D~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~ei 193 (280)
T KOG4591|consen 129 EIDFKED---------------DEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEI 193 (280)
T ss_pred ccccccc---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9987655 4669999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCC
Q 019280 334 AAENLAGT 341 (343)
Q Consensus 334 i~~~~~~v 341 (343)
|+.+|+++
T Consensus 194 IA~~W~dL 201 (280)
T KOG4591|consen 194 IAGAWDDL 201 (280)
T ss_pred HHhhcccc
Confidence 99888764
No 19
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.83 E-value=1.5e-20 Score=144.70 Aligned_cols=106 Identities=33% Similarity=0.575 Sum_probs=93.3
Q ss_pred HHHchhcCCCCcEEEEeC-CeeEEeeehhhhccCHhHHhhcCCc-cccc-cceEEecCCCHHHHHHHhhhhccCCCCCC-
Q 019280 183 FGMLLDNAESSDITFDVA-GEKFPAHKLVLAARSPIFRSKFFDE-LEED-KQEIIISDLEPKVFKAMLHFIYRDTLTED- 258 (343)
Q Consensus 183 ~~~l~~~~~~~Dv~~~v~-~~~~~~hk~iL~~~S~~F~~~~~~~-~~e~-~~~i~l~~~~~~~~~~~L~~iY~~~~~~~- 258 (343)
|++++.++.++|++|.++ +++|+|||.||+++|+||+.||.++ +.+. ..+|.++++++++|+.+|+|+|++.+.+.
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 456778899999999999 8999999999999999999999987 5665 56899999999999999999999998776
Q ss_pred CCCCcCCCCCCCCCcchHHHHHHHHHHHhhhChHhHHHHHHHHHhcc
Q 019280 259 VDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKD 305 (343)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 305 (343)
..+ +.+++.+|++|+++.|+..|+++|.+.
T Consensus 81 ~~~-----------------~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DEN-----------------VEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTT-----------------HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHH-----------------HHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 554 999999999999999999999999763
No 20
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.81 E-value=4.5e-19 Score=139.16 Aligned_cols=120 Identities=36% Similarity=0.615 Sum_probs=96.5
Q ss_pred eEEEEEEcCccccccCCCCCeEeecccccCCeeEEEEEEcCCCCCCCCCCeEEEEEEeeCC-----CceeEEEEEEEEec
Q 019280 24 GSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANE-----GTDVRALFELTLLD 98 (343)
Q Consensus 24 ~~~~w~I~~fs~~~~~~~~~~~~S~~f~~gg~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~-----~w~~~~~~~~~l~~ 98 (343)
++|+|+|.+|+. ..++.+.|+.|.++|+.|+|.+||+|... +.+|+|+||.|.+. .|.+.+++++.|++
T Consensus 1 ~~~~~~i~~~~~----~~~~~~~S~~f~~~g~~W~l~~~p~~~~~--~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~ 74 (126)
T cd00121 1 GKHTWKIVNFSE----LEGESIYSPPFEVGGYKWRIRIYPNGDGE--SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVN 74 (126)
T ss_pred CEEEEEECCCCC----CCCcEEECCCEEEcCEeEEEEEEcCCCCC--CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEEC
Confidence 479999999998 34689999999999999999999999763 57899999999764 39999999999999
Q ss_pred CCCCCccceecccccccccCCeee-cccCcccccccccchhccccCcCCCCCcEEEEEeee
Q 019280 99 QSGKGKHKVHSHFDRSLESGPYTL-KYRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVG 158 (343)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~~G~~~fi~~~~L~~~~yl~~d~l~i~~~v~ 158 (343)
+++.+..... ....+ ......|||.+|++|++|.+..++.||++.|+|+|.
T Consensus 75 ~~~~~~~~~~---------~~~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 75 QNGGKSLSKS---------FTHVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCCccceEe---------ccCCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence 9833221111 11122 234678999999999999866558999999999873
No 21
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.78 E-value=8e-19 Score=158.56 Aligned_cols=154 Identities=29% Similarity=0.461 Sum_probs=137.6
Q ss_pred cccccCcccHHHHHHHchhcCCCCcEEEEeCC-----eeEEeeehhhhccCHhHHhhcCCccccc-cceEEecCCCHHHH
Q 019280 170 HSIQVPESDIGAHFGMLLDNAESSDITFDVAG-----EKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVF 243 (343)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~Dv~~~v~~-----~~~~~hk~iL~~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~ 243 (343)
+..+.+.++.......++.++..+|+.|+|++ ++++|||.+|+..|.+|.+||++++.+. ..+|.++|+++.+|
T Consensus 92 ~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaF 171 (521)
T KOG2075|consen 92 PNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAF 171 (521)
T ss_pred cccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHh
Confidence 44455667777888888999999999999974 6899999999999999999999999999 99999999999999
Q ss_pred HHHhhhhccCCCCCCCCCCcCCCCCCCCCcchHHHHHHHHHHHhhhChHhHHHHHHHHHhccCChhhHHHHH-HHHhhcC
Q 019280 244 KAMLHFIYRDTLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKIL-SLADEHH 322 (343)
Q Consensus 244 ~~~L~~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~l-~~a~~~~ 322 (343)
..+|+|||.+.+.+..++ ++.+|.+|++|.++.|.+.|.++|...+...|.+..| +.|..++
T Consensus 172 l~~L~flYsdev~~~~dt-----------------vi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ 234 (521)
T KOG2075|consen 172 LAFLRFLYSDEVKLAADT-----------------VITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFD 234 (521)
T ss_pred HHHHHHHhcchhhhhHHH-----------------HHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhc
Confidence 999999999999887776 9999999999999999999999999887777666554 4599999
Q ss_pred chHHHHHHHHHHHhcccC
Q 019280 323 ATELKAVCLRFAAENLAG 340 (343)
Q Consensus 323 ~~~L~~~~~~~i~~~~~~ 340 (343)
.++|...|++-|..++..
T Consensus 235 ep~Li~~c~e~id~~~~~ 252 (521)
T KOG2075|consen 235 EPSLISICLEVIDKSFED 252 (521)
T ss_pred CHHHHHHHHHHhhhHHHh
Confidence 999999999999877653
No 22
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.76 E-value=5.2e-18 Score=135.70 Aligned_cols=135 Identities=20% Similarity=0.357 Sum_probs=99.6
Q ss_pred eEEEEEEcCcccccc-CCCCCeEeecccccC-CeeEEEEEEcCCCCCCCCCCeEEEEEEeeCCC------cee-EEEEEE
Q 019280 24 GSHKFVIQGYSLAKG-MGIGKHIASDNFTVG-GYQWAIYFYPDGKNPEDNSAYVSVFIALANEG------TDV-RALFEL 94 (343)
Q Consensus 24 ~~~~w~I~~fs~~~~-~~~~~~~~S~~f~~g-g~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~~------w~~-~~~~~~ 94 (343)
..++|+|.||+.+.+ ...+..+.||+|+.+ ||+.+|++|+||+...+.+.|+|||+++.+++ |++ .-++++
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl 81 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII 81 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence 468999999987654 336789999999885 99999999999987545688999999998753 995 569999
Q ss_pred EEecCCCCCcccee--ccccccc--cc----CCeee--------------cccCcccccccccchhccccCcCCCCCcEE
Q 019280 95 TLLDQSGKGKHKVH--SHFDRSL--ES----GPYTL--------------KYRGSMWGYKRFFRRAMLETSDYLKDDCLK 152 (343)
Q Consensus 95 ~l~~~~~~~~~~~~--~~~~~~~--~~----~~~~f--------------~~~~~~~G~~~fi~~~~L~~~~yl~~d~l~ 152 (343)
+|+||+.+...+.+ ..++... .+ ....| ..++.++||+.|++++.|+.++|++||++.
T Consensus 82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdDtlf 161 (167)
T cd03783 82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKNDDLI 161 (167)
T ss_pred EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCCeEE
Confidence 99999642221111 1111110 00 00011 124568999999999999989999999999
Q ss_pred EEEeee
Q 019280 153 INCTVG 158 (343)
Q Consensus 153 i~~~v~ 158 (343)
|.++++
T Consensus 162 I~~~~~ 167 (167)
T cd03783 162 IFVDFE 167 (167)
T ss_pred EEEecC
Confidence 998763
No 23
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.74 E-value=1.5e-17 Score=129.50 Aligned_cols=113 Identities=31% Similarity=0.533 Sum_probs=90.5
Q ss_pred EcCccccccCCCCCeEeecccccCCeeEEEEEEcCCCCCCCCCCeEEEEEEeeCC------CceeEEEEEEEEecCCCCC
Q 019280 30 IQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTDVRALFELTLLDQSGKG 103 (343)
Q Consensus 30 I~~fs~~~~~~~~~~~~S~~f~~gg~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~------~w~~~~~~~~~l~~~~~~~ 103 (343)
|+||+.++ ..+..+.|+.|.++|++|+|.+||+|+ ++++++||.|... +|++.+++++.++++.+..
T Consensus 1 i~nfs~l~--~~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 73 (119)
T PF00917_consen 1 IKNFSKLK--EGEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS 73 (119)
T ss_dssp ETTGGGHH--TSEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE
T ss_pred CcccceEe--CCCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCc
Confidence 78999988 223455569999999999999999985 5799999999864 6999999999999998876
Q ss_pred ccceecccccccccCCeeecccCcccccccccchhccccCcCCCCCcEEEEEeeee
Q 019280 104 KHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVGV 159 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~yl~~d~l~i~~~v~i 159 (343)
...... .+.|.. ...|||.+|++|++|.+..|+.||+++|+|+|.|
T Consensus 74 ~~~~~~---------~~~F~~-~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 74 ISKRIK---------SHSFNN-PSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEEEE---------CEEECT-TSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred ceeeee---------eeEEee-ecccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence 322111 244543 4789999999999998666899999999999975
No 24
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.73 E-value=3e-17 Score=130.50 Aligned_cols=134 Identities=20% Similarity=0.331 Sum_probs=100.4
Q ss_pred ceEEEEEEcCcccccc-CCCCCeEeeccccc-CCeeEEEEEEcCCCCCCCCCCeEEEEEEeeCCC------ceeE-EEEE
Q 019280 23 NGSHKFVIQGYSLAKG-MGIGKHIASDNFTV-GGYQWAIYFYPDGKNPEDNSAYVSVFIALANEG------TDVR-ALFE 93 (343)
Q Consensus 23 ~~~~~w~I~~fs~~~~-~~~~~~~~S~~f~~-gg~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~~------w~~~-~~~~ 93 (343)
+..++|+|.+|+.+.+ .+.+..++||+|+. .||+.++++|+||++.+ ++|+|||+++.+++ |++. .+++
T Consensus 1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~--~~~lsl~~~lm~Ge~D~~L~WPf~~~qit 78 (167)
T cd03782 1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY--PGNLAIYLHLTSGPNDDQLQWPCPWQQAT 78 (167)
T ss_pred CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC--CCEEEEEEEEeccCCCccccCCCcCCeEE
Confidence 3569999999987654 46688999999986 59999999999998843 67999999998753 9999 8999
Q ss_pred EEEecCCCCCcccee--c--ccccccccC---Ce-----------------eecccCcccccccccchhccccCcCCCCC
Q 019280 94 LTLLDQSGKGKHKVH--S--HFDRSLESG---PY-----------------TLKYRGSMWGYKRFFRRAMLETSDYLKDD 149 (343)
Q Consensus 94 ~~l~~~~~~~~~~~~--~--~~~~~~~~~---~~-----------------~f~~~~~~~G~~~fi~~~~L~~~~yl~~d 149 (343)
+.|+||+.+...+.+ . .+.....+. .+ +...++.++||+.|++++.|+.+.|++||
T Consensus 79 ~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD 158 (167)
T cd03782 79 MMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGD 158 (167)
T ss_pred EEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCC
Confidence 999999752222111 1 122221111 11 00122678999999999999989999999
Q ss_pred cEEEEEeee
Q 019280 150 CLKINCTVG 158 (343)
Q Consensus 150 ~l~i~~~v~ 158 (343)
.+.|-++++
T Consensus 159 ~ifi~~~~e 167 (167)
T cd03782 159 DVIFLLTME 167 (167)
T ss_pred eEEEEEecC
Confidence 999987763
No 25
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.71 E-value=2e-17 Score=121.51 Aligned_cols=89 Identities=39% Similarity=0.643 Sum_probs=83.0
Q ss_pred cEEEEeCCeeEEeeehhhhccCHhHHhhcCCccccc-cceEEecCCCHHHHHHHhhhhccCCCCCCCCCCcCCCCCCCCC
Q 019280 194 DITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCMS 272 (343)
Q Consensus 194 Dv~~~v~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~~~~~~ 272 (343)
|+++.++|+.|++||.+|+++|+||++||.+++.+. ...+.++++++..|+.+|+|+|++.+.....+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~----------- 69 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEEN----------- 69 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHH-----------
Confidence 789999999999999999999999999999888877 88999999999999999999999998776554
Q ss_pred cchHHHHHHHHHHHhhhChHhHHHHHH
Q 019280 273 SVSDTLTAKLLAAADRYGLERLRLMCG 299 (343)
Q Consensus 273 ~~~~~~~~~ll~~A~~~~~~~l~~~c~ 299 (343)
+.+++.+|++|+++.|...|+
T Consensus 70 ------~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 70 ------VEELLELADYLQIPGLVELCE 90 (90)
T ss_pred ------HHHHHHHHHHHCcHHHHhhhC
Confidence 999999999999999999985
No 26
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.68 E-value=1.4e-16 Score=140.94 Aligned_cols=140 Identities=23% Similarity=0.329 Sum_probs=130.1
Q ss_pred HHHchhcCCCCcEEEEeCCeeEEeeehhhhccCHhHHhhcCCccccc-cceEEec----CCCHHHHHHHhhhhccCCCCC
Q 019280 183 FGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIIS----DLEPKVFKAMLHFIYRDTLTE 257 (343)
Q Consensus 183 ~~~l~~~~~~~Dv~~~v~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~-~~~i~l~----~~~~~~~~~~L~~iY~~~~~~ 257 (343)
+..|+.+++.|||++.+-|++.+.||..|. +|+||.+||.|-++|+ .+.|.++ .++..+|...+.=+|.+++.+
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI 138 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEI 138 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheec
Confidence 456777899999999999999999999997 9999999999999999 7766664 689999999999999999999
Q ss_pred CCCCCcCCCCCCCCCcchHHHHHHHHHHHhhhChHhHHHHHHHHHhccCChhhHHHHHHHHhhcCchHHHHHHHHHHHhc
Q 019280 258 DVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAEN 337 (343)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~ 337 (343)
..++ +..+|++|..+++++|.++|.+.+++.++++|++..++.|.+|+.+.+++.|++++..|
T Consensus 139 ~l~d-----------------v~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 139 KLSD-----------------VVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred cHHH-----------------HHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 8775 99999999999999999999999999999999999999999999999999999999988
Q ss_pred ccC
Q 019280 338 LAG 340 (343)
Q Consensus 338 ~~~ 340 (343)
+-.
T Consensus 202 l~~ 204 (488)
T KOG4682|consen 202 LMT 204 (488)
T ss_pred hHh
Confidence 754
No 27
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.66 E-value=8.1e-17 Score=153.37 Aligned_cols=139 Identities=24% Similarity=0.375 Sum_probs=117.4
Q ss_pred CCCcEEEEe-CCeeEEeeehhhhccCHhHHhhcCCccccc-cceEEecCCCHHHHHHHhhhhcc-CCCCCCCCCCcCCCC
Q 019280 191 ESSDITFDV-AGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVFKAMLHFIYR-DTLTEDVDVDVATPS 267 (343)
Q Consensus 191 ~~~Dv~~~v-~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~~~~L~~iY~-~~~~~~~~~~~~~~~ 267 (343)
+.-|+.|.. +|+.++|||++|++|++||..||..-+.|+ .-.+..-.+..+.+..+|+|+|. ++...-.+
T Consensus 709 e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~------- 781 (1267)
T KOG0783|consen 709 ETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKD------- 781 (1267)
T ss_pred cceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhc-------
Confidence 344666665 778899999999999999999998888887 66666667779999999999994 44332211
Q ss_pred CCCCCcchHHHHHHHHHHHhhhChHhHHHHHHHHHhccCChhhHHHHHHHHhhcCchHHHHHHHHHHHhcccCC
Q 019280 268 SSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAENLAGT 341 (343)
Q Consensus 268 ~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v 341 (343)
.....++-++|.+||.|-+.+|+..||..|.+.++..++..+|++|-+|++.+|+..|++||+.|++.+
T Consensus 782 -----~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~ 850 (1267)
T KOG0783|consen 782 -----LKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFF 850 (1267)
T ss_pred -----cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHH
Confidence 122456889999999999999999999999999999999999999999999999999999999998653
No 28
>smart00061 MATH meprin and TRAF homology.
Probab=99.56 E-value=2.4e-14 Score=106.53 Aligned_cols=89 Identities=21% Similarity=0.379 Sum_probs=72.0
Q ss_pred EEEEEcCccccccCCCCCeEeecccccCCeeEEEEEEcCCCCCCCCCCeEEEEEEeeCC-----CceeEEEEEEEEecCC
Q 019280 26 HKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANE-----GTDVRALFELTLLDQS 100 (343)
Q Consensus 26 ~~w~I~~fs~~~~~~~~~~~~S~~f~~gg~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~-----~w~~~~~~~~~l~~~~ 100 (343)
++|+|++|+.+. .|+.+.|++|.+||++|+|.+||+ ++|+|+||.|... +|++.|+++++|+|++
T Consensus 2 ~~~~~~~~~~~~---~~~~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~ 71 (95)
T smart00061 2 LSHTFKNVSRLE---EGESYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQN 71 (95)
T ss_pred ceeEEEchhhcc---cCceEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCC
Confidence 579999999873 368899999999999999999998 3789999998653 5999999999999998
Q ss_pred CCCccceecccccccccCCeeecccCccccccccc
Q 019280 101 GKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFF 135 (343)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi 135 (343)
++.... ...+.|.. ...|||.+|+
T Consensus 72 ~~~~~~----------~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 72 GKSLSK----------KDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CCEEee----------eeeEEEcC-CCccceeeEC
Confidence 764311 12355654 6789998875
No 29
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.48 E-value=2.2e-13 Score=123.25 Aligned_cols=216 Identities=26% Similarity=0.379 Sum_probs=165.6
Q ss_pred EEEcCccccccCCCCCeEeecccccCCeeEEEEEEcCCCCCCCCCCeEEEEEEeeCC-CceeEEEEEEEEecCCCCCc-c
Q 019280 28 FVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANE-GTDVRALFELTLLDQSGKGK-H 105 (343)
Q Consensus 28 w~I~~fs~~~~~~~~~~~~S~~f~~gg~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~-~w~~~~~~~~~l~~~~~~~~-~ 105 (343)
|.|.+|+... ..++|..|..||..|++.+||.|+ ++++|+..... +|.+.+.+.+.+.|+..... .
T Consensus 8 ~~~~~~~~~~-----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~v~n~~~~~~~~ 75 (297)
T KOG1987|consen 8 WVISNFSSVG-----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSPGWERYAKLRLTVVNQKSEKYLS 75 (297)
T ss_pred eeeccCcchh-----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCCCcceeEEEEEEEccCCCcceee
Confidence 9999987776 678899999999999999999974 68887766554 79999999999999976532 1
Q ss_pred ceecccccccccCCeeecc--cCcccccccccchhccccCcCCCCCcEEEEEeeeeeeeecccCCccccccCcccHHHHH
Q 019280 106 KVHSHFDRSLESGPYTLKY--RGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGAHF 183 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~~f~~--~~~~~G~~~fi~~~~L~~~~yl~~d~l~i~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~ 183 (343)
... .+...+.. ....||+..+++...+....
T Consensus 76 ~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------------------------------------- 108 (297)
T KOG1987|consen 76 TVE--------EGFSWFRFNKVLKEWGFGKMLPLTLLIDCS--------------------------------------- 108 (297)
T ss_pred eee--------eeEEeccccccccccCcccccChHHhhccc---------------------------------------
Confidence 110 00011111 12345554444433332110
Q ss_pred HHchhcCCCCcEEEEeCCeeEEeeehhhhccCHhHHhhcCCccccc-cceEEecCCCHHHHHHHhhhhccCCCCCCCCCC
Q 019280 184 GMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVD 262 (343)
Q Consensus 184 ~~l~~~~~~~Dv~~~v~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~ 262 (343)
+..+.+|+.++++++++|+.|+..+..+. ...+.+.+..+..++++..|.|...-......
T Consensus 109 -----------------~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~- 170 (297)
T KOG1987|consen 109 -----------------NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVER- 170 (297)
T ss_pred -----------------CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHH-
Confidence 44589999999999999999998776665 66778889999999999999999654433221
Q ss_pred cCCCCCCCCCcchHHHH---HHHHHHHhhhChHhHHHHHHHHHhccCChhhHHHHHHHHhhcCchHHHHHHHHHHHh
Q 019280 263 VATPSSSCMSSVSDTLT---AKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAE 336 (343)
Q Consensus 263 ~~~~~~~~~~~~~~~~~---~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~ 336 (343)
. ..++.+|.+|+...|+..|...+...+...++...++.+..+++..+...|..++..
T Consensus 171 ----------------~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 231 (297)
T KOG1987|consen 171 ----------------IFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAA 231 (297)
T ss_pred ----------------hhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhc
Confidence 3 278889999999999999999999998999999999999999999999999988885
No 30
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2e-12 Score=122.83 Aligned_cols=126 Identities=23% Similarity=0.422 Sum_probs=102.3
Q ss_pred ceeceEEEEEEcCccccccCCCCCeEeecccccCCeeEEEEEEcCCCCCCCCCCeEEEEEEeeCC--------CceeEEE
Q 019280 20 ETVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANE--------GTDVRAL 91 (343)
Q Consensus 20 ~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~gg~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~--------~w~~~~~ 91 (343)
+...-++.|+|.+|+.+. +...||+|.+||+.|+|.++|+|++. .+ +|+||.+... .|.|+++
T Consensus 35 e~~~~sftW~vk~wsel~-----~k~~Sp~F~vg~~twki~lfPqG~nq---~~-~sVyLe~~pqe~e~~~gk~~~ccaq 105 (1089)
T COG5077 35 ELLEMSFTWKVKRWSELA-----KKVESPPFSVGGHTWKIILFPQGNNQ---CN-VSVYLEYEPQELEETGGKYYDCCAQ 105 (1089)
T ss_pred HHhhcccceecCChhhhh-----hhccCCcccccCeeEEEEEecccCCc---cc-cEEEEEeccchhhhhcCcchhhhhh
Confidence 445578999999999987 46789999999999999999999873 23 9999988652 2999999
Q ss_pred EEEEEecCCCCCccceecccccccccCCeeecccCcccccccccchhccc-----cCcCCCCCcEEEEEeeeeeee
Q 019280 92 FELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE-----TSDYLKDDCLKINCTVGVVVS 162 (343)
Q Consensus 92 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~-----~~~yl~~d~l~i~~~v~i~~~ 162 (343)
|.|.|.++...... ..++..|+|+.....|||.+|+....|. ...|+.+|.+.|++.|.|.+.
T Consensus 106 Faf~Is~p~~pti~--------~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd 173 (1089)
T COG5077 106 FAFDISNPKYPTIE--------YINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD 173 (1089)
T ss_pred eeeecCCCCCCchh--------hhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence 99999988553221 1233558888889999999999998882 235899999999999999874
No 31
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.97 E-value=1.2e-09 Score=105.22 Aligned_cols=125 Identities=26% Similarity=0.405 Sum_probs=83.8
Q ss_pred cCcccHHHHHHHchhcC----CCCcEEEEeCCeeEEeeehhhhccCHhHHhhcCCccccc-------------cceEEec
Q 019280 174 VPESDIGAHFGMLLDNA----ESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED-------------KQEIIIS 236 (343)
Q Consensus 174 ~~~~~~~~~~~~l~~~~----~~~Dv~~~v~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~-------------~~~i~l~ 236 (343)
++.+.+...+..|+.+. .+.||+|.||++.|+|||+||++||++|+.+|......+ -..|.++
T Consensus 536 ~~ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve 615 (1267)
T KOG0783|consen 536 AASSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVE 615 (1267)
T ss_pred cccccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeec
Confidence 34566777788887653 468999999999999999999999999999996543332 2345578
Q ss_pred CCCHHHHHHHhhhhccCCCCCCCCCCc-------CCCCCCCCCcchHHHHHHHHHHHhhhChHhHHHHHHHH
Q 019280 237 DLEPKVFKAMLHFIYRDTLTEDVDVDV-------ATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSH 301 (343)
Q Consensus 237 ~~~~~~~~~~L~~iY~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 301 (343)
++.+..|+.+|+||||+..--+..+++ .-.+|..+ .+.....|+-.+.+|++..|......+
T Consensus 616 ~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~q---rtrtCeMl~~~lekf~l~el~~~~~s~ 684 (1267)
T KOG0783|consen 616 DIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQ---RTRTCEMLANLLEKFHLAELLPFSVSR 684 (1267)
T ss_pred cCCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhh---cccHHHHHHHHHhhhhHHhhhhhhhhc
Confidence 999999999999999996433322111 11111000 111133466667777777766655543
No 32
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.44 E-value=2.4e-07 Score=78.94 Aligned_cols=84 Identities=21% Similarity=0.305 Sum_probs=70.3
Q ss_pred cCcccHHHHHHHchhcCCCCcEEEEeCCeeEEeeehhhhccCHhHHhhcCCccccc---cceEEecCCCHHHHHHHhhhh
Q 019280 174 VPESDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED---KQEIIISDLEPKVFKAMLHFI 250 (343)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~Dv~~~v~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~---~~~i~l~~~~~~~~~~~L~~i 250 (343)
.+..++.+++...++..-..|+-|+.....|+|||++|++|||+|+.+.+..-... .-.|..-+++...|.++|+|+
T Consensus 112 ~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l 191 (401)
T KOG2838|consen 112 KEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSL 191 (401)
T ss_pred cchhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHH
Confidence 45578899999998888899999999999999999999999999999986542222 445666689999999999999
Q ss_pred ccCCCCC
Q 019280 251 YRDTLTE 257 (343)
Q Consensus 251 Y~~~~~~ 257 (343)
|+|+.-.
T Consensus 192 ~tgEfgm 198 (401)
T KOG2838|consen 192 ITGEFGM 198 (401)
T ss_pred Hhcccch
Confidence 9998643
No 33
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.42 E-value=3.3e-07 Score=81.49 Aligned_cols=121 Identities=24% Similarity=0.334 Sum_probs=97.1
Q ss_pred eeEEeeehhhhccCHhHHhhcCCccccc-----cceEEecCCCHHHHHHHhhhhccCCCCCCCCCCcCCCCCCCCCcchH
Q 019280 202 EKFPAHKLVLAARSPIFRSKFFDELEED-----KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCMSSVSD 276 (343)
Q Consensus 202 ~~~~~hk~iL~~~S~~F~~~~~~~~~e~-----~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (343)
.+++||+++++ |++||..||.|++.|+ .....++.....+.+..|+|+|+++..+.+.-
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~--------------- 364 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDV--------------- 364 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHH---------------
Confidence 56999999997 8899999999999985 23345566778899999999999998887663
Q ss_pred HHHHHHHHHHhhhChH--h-HHHHHHHHHhc---cCChhhHHHHHHHHhhcCchHHHHHHHHHHHhcccC
Q 019280 277 TLTAKLLAAADRYGLE--R-LRLMCGSHLCK---DISVNSVAKILSLADEHHATELKAVCLRFAAENLAG 340 (343)
Q Consensus 277 ~~~~~ll~~A~~~~~~--~-l~~~c~~~l~~---~i~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~ 340 (343)
+.+++-.|++..+. + |+..+-..|++ .++.-++.+++.++.......|...+-.|++.|+..
T Consensus 365 --A~dvll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~ 432 (516)
T KOG0511|consen 365 --ASDVLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLL 432 (516)
T ss_pred --HhhHHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 78888888888665 2 55555554544 345667999999999999999999999999988643
No 34
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.39 E-value=2.2e-06 Score=72.83 Aligned_cols=95 Identities=23% Similarity=0.383 Sum_probs=80.2
Q ss_pred EEEEeCCeeEEeeehhhhccCHhHHhhcCCccccc---cceEEecCCCHHHHHHHhhhhccCCCCCCCCCCcCCCCCCCC
Q 019280 195 ITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED---KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCM 271 (343)
Q Consensus 195 v~~~v~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~---~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~~~~~ 271 (343)
|.+.|||..|..++.-|+-...+|++|+..++.-. ++.|-| |-+|..|..+|+||-.|.+..+..
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~----------- 74 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPES----------- 74 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccc-----------
Confidence 56889999999999999999999999999876533 445655 679999999999999888875443
Q ss_pred CcchHHHHHHHHHHHhhhChHhHHHHHHHHHhcc
Q 019280 272 SSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKD 305 (343)
Q Consensus 272 ~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 305 (343)
...+.+|++=|+.|.+++|.++|+..|...
T Consensus 75 ----~kel~El~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 75 ----EKELKELLREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred ----hHHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 334899999999999999999999987553
No 35
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.22 E-value=1.5e-06 Score=74.11 Aligned_cols=137 Identities=24% Similarity=0.390 Sum_probs=88.2
Q ss_pred ccHHHHHHHchhcC-CCCcEEEEe-CC--------------eeEEeeehhhhccCHhHHhhcCCccccc----------c
Q 019280 177 SDIGAHFGMLLDNA-ESSDITFDV-AG--------------EKFPAHKLVLAARSPIFRSKFFDELEED----------K 230 (343)
Q Consensus 177 ~~~~~~~~~l~~~~-~~~Dv~~~v-~~--------------~~~~~hk~iL~~~S~~F~~~~~~~~~e~----------~ 230 (343)
..+..+++.|++.. ...|+.+.+ +| .+++|||+|.++||++|+.++....+++ .
T Consensus 220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~P 299 (401)
T KOG2838|consen 220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRP 299 (401)
T ss_pred hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCC
Confidence 44556677776654 345555554 22 4789999999999999999997554442 2
Q ss_pred ceEEecC-CCHHHH-HHHhhhhccCCCCCCCCCCcCCCCC------------C-CCCcchHHHHHHHHHHHhhhChHhHH
Q 019280 231 QEIIISD-LEPKVF-KAMLHFIYRDTLTEDVDVDVATPSS------------S-CMSSVSDTLTAKLLAAADRYGLERLR 295 (343)
Q Consensus 231 ~~i~l~~-~~~~~~-~~~L~~iY~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~ll~~A~~~~~~~l~ 295 (343)
..|.+++ +=|..| -.+|+++||+.+..+..- .+.+. . ..-......+++|+.+|-.|.++-|.
T Consensus 300 kRIifdE~I~PkafA~i~lhclYTD~lDlSl~h--kce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLa 377 (401)
T KOG2838|consen 300 KRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAH--KCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLA 377 (401)
T ss_pred ceeechhhhcchhhhhhhhhhheecccchhhcc--cCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566654 334444 467899999987654221 00000 0 11112233467889999999999999
Q ss_pred HHHHHHHhccCChhhHHHHH
Q 019280 296 LMCGSHLCKDISVNSVAKIL 315 (343)
Q Consensus 296 ~~c~~~l~~~i~~~~~~~~l 315 (343)
+.|+..+......+++..+|
T Consensus 378 Qa~e~Vir~acaadlsn~cL 397 (401)
T KOG2838|consen 378 QACEDVIRKACAADLSNGCL 397 (401)
T ss_pred HHHHHHHHhhhhhhcccccc
Confidence 99999988876666554443
No 36
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=98.03 E-value=1.1e-05 Score=59.69 Aligned_cols=87 Identities=25% Similarity=0.459 Sum_probs=65.2
Q ss_pred EEEEeCCeeEEeeehhhh-ccCHhHHhhcCCc---cccc-cceEEecCCCHHHHHHHhhhhcc-CCCCCCCCCCcCCCCC
Q 019280 195 ITFDVAGEKFPAHKLVLA-ARSPIFRSKFFDE---LEED-KQEIIISDLEPKVFKAMLHFIYR-DTLTEDVDVDVATPSS 268 (343)
Q Consensus 195 v~~~v~~~~~~~hk~iL~-~~S~~F~~~~~~~---~~e~-~~~i~l~~~~~~~~~~~L~~iY~-~~~~~~~~~~~~~~~~ 268 (343)
|.|.|||+.|.+-+..|. ....+|..|+.++ .... ...+-| |-++..|+.+|+|+.+ +.++.+...
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~------- 72 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEI------- 72 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-------
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCch-------
Confidence 679999999999999999 4466899999864 2222 566666 6799999999999999 666653221
Q ss_pred CCCCcchHHHHHHHHHHHhhhChHhH-HHHH
Q 019280 269 SCMSSVSDTLTAKLLAAADRYGLERL-RLMC 298 (343)
Q Consensus 269 ~~~~~~~~~~~~~ll~~A~~~~~~~l-~~~c 298 (343)
....+++-|+.|+++.| .+.|
T Consensus 73 ---------~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 73 ---------CLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp ----------HHHHHHHHHHHT-HHHHBHHC
T ss_pred ---------hHHHHHHHHHHcCCCccccCCC
Confidence 18999999999999998 6665
No 37
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.55 E-value=0.00077 Score=48.38 Aligned_cols=86 Identities=15% Similarity=0.190 Sum_probs=61.4
Q ss_pred CCc-EEEEe-CCeeEEeeehhhhccCHhHHhhcCCccccc---cceEEecCCCHHHHHHHhhhh-----ccCC-CCCCCC
Q 019280 192 SSD-ITFDV-AGEKFPAHKLVLAARSPIFRSKFFDELEED---KQEIIISDLEPKVFKAMLHFI-----YRDT-LTEDVD 260 (343)
Q Consensus 192 ~~D-v~~~v-~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~---~~~i~l~~~~~~~~~~~L~~i-----Y~~~-~~~~~~ 260 (343)
.++ |.++. +|..|-..|. +|.-|+-.++||.|+...+ .+++.+.|++...++.+.+|+ |++. ..++.-
T Consensus 15 ~~~yVkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF 93 (112)
T KOG3473|consen 15 DSMYVKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEF 93 (112)
T ss_pred chhheEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCC
Confidence 344 44444 4566666664 5678999999999876554 889999999999999999998 3443 222222
Q ss_pred CCcCCCCCCCCCcchHHHHHHHHHHHhhhC
Q 019280 261 VDVATPSSSCMSSVSDTLTAKLLAAADRYG 290 (343)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~ 290 (343)
+ ...+++++||.+|+.+.
T Consensus 94 ~------------IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 94 D------------IPPEMALELLMAANYLE 111 (112)
T ss_pred C------------CCHHHHHHHHHHhhhhc
Confidence 1 23567999999999865
No 38
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.10 E-value=0.00092 Score=59.48 Aligned_cols=110 Identities=18% Similarity=0.247 Sum_probs=84.8
Q ss_pred eeEEeeehhhhccCHhHHhhcCCccccc--cceEEec-CCCHHHHHHHhhhhccCCCCCCCCCCcCCCCCCCCCcchHHH
Q 019280 202 EKFPAHKLVLAARSPIFRSKFFDELEED--KQEIIIS-DLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCMSSVSDTL 278 (343)
Q Consensus 202 ~~~~~hk~iL~~~S~~F~~~~~~~~~e~--~~~i~l~-~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (343)
+.|.|.+.+|-..=.||+..+.....++ ..+|+|. .-|-.+|+-+++|+....-.++..|
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~N----------------- 76 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSN----------------- 76 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCc-----------------
Confidence 6899999999999999999996533233 5667776 6788999999999999666666655
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHhccCC--------hh--hHHHHHHHHhhcCchHHHH
Q 019280 279 TAKLLAAADRYGLERLRLMCGSHLCKDIS--------VN--SVAKILSLADEHHATELKA 328 (343)
Q Consensus 279 ~~~ll~~A~~~~~~~l~~~c~~~l~~~i~--------~~--~~~~~l~~a~~~~~~~L~~ 328 (343)
+..||.-|+.++|+.|.+.|-.|+.++++ .+ |---+.++|.++...+|..
T Consensus 77 vvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el~~ 136 (317)
T PF11822_consen 77 VVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEELEA 136 (317)
T ss_pred EEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccHhH
Confidence 99999999999999999999999866532 11 1223456777777666655
No 39
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=97.05 E-value=0.0024 Score=58.51 Aligned_cols=92 Identities=20% Similarity=0.299 Sum_probs=71.5
Q ss_pred cEEEEeCCeeEEeeehhhhccC--HhHHhhcCCccccc--cceEEecCCCHHHHHHHhhhhccCCCCCCCCCCcCCCCCC
Q 019280 194 DITFDVAGEKFPAHKLVLAARS--PIFRSKFFDELEED--KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSS 269 (343)
Q Consensus 194 Dv~~~v~~~~~~~hk~iL~~~S--~~F~~~~~~~~~e~--~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~~~ 269 (343)
=|.|.|||+.|.-.+.-|+... .+|.+++.+++... ..-..+-|-+|+.|..+|+|+-|++++....-
T Consensus 12 ~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~-------- 83 (465)
T KOG2714|consen 12 RVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVF-------- 83 (465)
T ss_pred eEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCc--------
Confidence 4788999999999999998776 69999998877655 33344557899999999999999999985442
Q ss_pred CCCcchHHHHHHHHHHHhhhChHhHHH---HHHHH
Q 019280 270 CMSSVSDTLTAKLLAAADRYGLERLRL---MCGSH 301 (343)
Q Consensus 270 ~~~~~~~~~~~~ll~~A~~~~~~~l~~---~c~~~ 301 (343)
....|+.-|..|++..|.+ +|+..
T Consensus 84 --------~~~llhdEA~fYGl~~llrrl~~~~~~ 110 (465)
T KOG2714|consen 84 --------PERLLHDEAMFYGLTPLLRRLTLCEEL 110 (465)
T ss_pred --------hhhhhhhhhhhcCcHHHHHHhhcCccc
Confidence 0344444899999998876 55554
No 40
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.63 E-value=0.0045 Score=46.54 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=61.5
Q ss_pred EEEEe-CCeeEEeeehhhhccCHhHHhhcCCccccc--cceEEecCCCHHHHHHHhhhhccCCCCCCCCCC--cCC-CC-
Q 019280 195 ITFDV-AGEKFPAHKLVLAARSPIFRSKFFDELEED--KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVD--VAT-PS- 267 (343)
Q Consensus 195 v~~~v-~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~--~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~--~~~-~~- 267 (343)
++|+. +|..|.+.+.+. ..|..++.|+.+...+. ...|++++++..+++.+++|++...-....... .+. ++
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 44554 788999999977 59999999996533322 358999999999999999999654322111100 000 00
Q ss_pred CCCCCcchHHHHHHHHHHHhhhCh
Q 019280 268 SSCMSSVSDTLTAKLLAAADRYGL 291 (343)
Q Consensus 268 ~~~~~~~~~~~~~~ll~~A~~~~~ 291 (343)
..-+ .....+.+|+.||+.+++
T Consensus 83 ~F~~--~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFLK--IDQETLFELILAANYLDI 104 (104)
T ss_pred HHHc--CCHHHHHHHHHHHHhhCC
Confidence 0000 234468999999998864
No 41
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.47 E-value=0.001 Score=59.84 Aligned_cols=103 Identities=27% Similarity=0.286 Sum_probs=71.0
Q ss_pred HHHHHHchhcCCC---CcEEEEe-CCeeEEeeehhhhccCHhHHhhcCCccccccceEEecCCCHHHHHHHhhhhccCCC
Q 019280 180 GAHFGMLLDNAES---SDITFDV-AGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRDTL 255 (343)
Q Consensus 180 ~~~~~~l~~~~~~---~Dv~~~v-~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~i~l~~~~~~~~~~~L~~iY~~~~ 255 (343)
..++..++.+..+ .|++|.+ +|+-|-|||++|++||.+|..-+..-+.. ..+|+-..+-+.+|..||+|+|-..-
T Consensus 134 aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~-~heI~~~~v~~~~f~~flk~lyl~~n 212 (516)
T KOG0511|consen 134 AAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQ-GHEIEAHRVILSAFSPFLKQLYLNTN 212 (516)
T ss_pred chHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhccc-cCchhhhhhhHhhhhHHHHHHHHhhh
Confidence 3556666655433 6888887 57778899999999999886655321111 45666667889999999999998632
Q ss_pred CCCCCCCcCCCCCCCCCcchHHHHHHHHHHHhhhChHhHHHHHHH
Q 019280 256 TEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGS 300 (343)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~ 300 (343)
.+-. .+...|+.+..+|+++.|....++
T Consensus 213 a~~~-----------------~qynallsi~~kF~~e~l~~~~~k 240 (516)
T KOG0511|consen 213 AEWK-----------------DQYNALLSIEVKFSKEKLSLEISK 240 (516)
T ss_pred hhhh-----------------hHHHHHHhhhhhccHHHhHHHHhh
Confidence 2211 126788888889888777654443
No 42
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=96.47 E-value=0.0064 Score=50.93 Aligned_cols=92 Identities=18% Similarity=0.314 Sum_probs=73.4
Q ss_pred cEEEEeCCeeEEeeehhhhccCH--hHHhhcCCcc--ccc-cceEEecCCCHHHHHHHhhhhccCCCCCCCCCCcCCCCC
Q 019280 194 DITFDVAGEKFPAHKLVLAARSP--IFRSKFFDEL--EED-KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSS 268 (343)
Q Consensus 194 Dv~~~v~~~~~~~hk~iL~~~S~--~F~~~~~~~~--~e~-~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~~ 268 (343)
=|.+.++|+.|..-+--|..|-| .+.+||.+.- .+. ..-..+-|-++.-|+.+|+|+-.|.++.... .+
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~------i~ 83 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSD------ID 83 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCC------cc
Confidence 46788899999888888887765 7888997643 222 4455666889999999999999999876443 12
Q ss_pred CCCCcchHHHHHHHHHHHhhhChHhHHHHHHHH
Q 019280 269 SCMSSVSDTLTAKLLAAADRYGLERLRLMCGSH 301 (343)
Q Consensus 269 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 301 (343)
+..+|+.|+.|++-.|++..|+.
T Consensus 84 ----------~lgvLeeArff~i~sL~~hle~~ 106 (302)
T KOG1665|consen 84 ----------CLGVLEEARFFQILSLKDHLEDS 106 (302)
T ss_pred ----------HHHHHHHhhHHhhHhHHhHHhhh
Confidence 99999999999999999998883
No 43
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0056 Score=64.73 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=89.4
Q ss_pred EEEEEcCccccccCCCCCeEeecccccCCeeEEEEEEcCCCCCCCCCCeEEEEEEeeCCC----ceeEEEEEEEEecCCC
Q 019280 26 HKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANEG----TDVRALFELTLLDQSG 101 (343)
Q Consensus 26 ~~w~I~~fs~~~~~~~~~~~~S~~f~~gg~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~~----w~~~~~~~~~l~~~~~ 101 (343)
.+|.+.+..... ....||.|..|+.+|++.+.|+|+. ...++.++.|...+ |.+.+++.+.+.|. .
T Consensus 29 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~-~ 98 (1093)
T KOG1863|consen 29 TTIDGIDDKSLL-----YRALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSLKSWSCGAQAVLRVKNT-I 98 (1093)
T ss_pred ccccCcCcchhh-----hHhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCCcceEecchhhhccccC-C
Confidence 346655554443 2466999999999999999999874 35589999987632 99999999999993 3
Q ss_pred CCccceecccccccccCCeeecccCcccccccccchhccc--cCcCCCCCcEEEEEeeeeee
Q 019280 102 KGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE--TSDYLKDDCLKINCTVGVVV 161 (343)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~--~~~yl~~d~l~i~~~v~i~~ 161 (343)
+..... .....+.|......||+.+|..+.++. ..+|+.+|++.+++.|.+..
T Consensus 99 ~~~~~~-------~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~ 153 (1093)
T KOG1863|consen 99 DNLPDP-------EKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQ 153 (1093)
T ss_pred CCchhh-------hhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeec
Confidence 332111 112346677778899999999999993 47899999999999998765
No 44
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.21 E-value=0.0034 Score=58.74 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=65.2
Q ss_pred ceeceEEEEEEcCcccccc---CCCCCeEeeccccc--CCeeEEEEEEcCCCCCCCCCCeEEEEEEeeCCC------cee
Q 019280 20 ETVNGSHKFVIQGYSLAKG---MGIGKHIASDNFTV--GGYQWAIYFYPDGKNPEDNSAYVSVFIALANEG------TDV 88 (343)
Q Consensus 20 ~~~~~~~~w~I~~fs~~~~---~~~~~~~~S~~f~~--gg~~W~L~v~p~g~~~~~~~~~lsl~l~~~~~~------w~~ 88 (343)
....|...|+|.++...+. .+.+..+.|+.|.. .||..+.++|-||++. +.+.++|+|+....++ |++
T Consensus 276 ~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~-~~~~~~s~~~~~~~ge~d~~l~wpf 354 (391)
T KOG0297|consen 276 RSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGT-GKGTHLSLYFVVMRGEYDALLPWPF 354 (391)
T ss_pred hccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCC-CCcceeeeeeeecccCcccccccCC
Confidence 3456999999999955443 24467888999985 6999999999999884 4788999999887643 999
Q ss_pred EEEEEEEEecC
Q 019280 89 RALFELTLLDQ 99 (343)
Q Consensus 89 ~~~~~~~l~~~ 99 (343)
.-++++.++++
T Consensus 355 ~~~v~~~l~dq 365 (391)
T KOG0297|consen 355 RQKVTLMLLDQ 365 (391)
T ss_pred CCceEEEEecc
Confidence 99999999999
No 45
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.08 E-value=0.026 Score=37.93 Aligned_cols=56 Identities=13% Similarity=0.297 Sum_probs=43.1
Q ss_pred EEEEe-CCeeEEeeehhhhccCHhHHhhcCCccccccceEEecCCCHHHHHHHhhhhcc
Q 019280 195 ITFDV-AGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYR 252 (343)
Q Consensus 195 v~~~v-~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~i~l~~~~~~~~~~~L~~iY~ 252 (343)
++|+. +|+.|.+.+.++. .|+.++.|+.+...+ ...|++++++..+++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~-~~~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDE-DEPIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCC-GTEEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccc-ccccccCccCHHHHHHHHHHHHh
Confidence 34443 7899999998876 999999999642222 22799999999999999999963
No 46
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.092 Score=42.56 Aligned_cols=114 Identities=14% Similarity=0.240 Sum_probs=72.4
Q ss_pred CCeeEEeeehhhhccCHhHHhhcCCccccc-cceEEecCCCHHHHHHHhhhhccCCCCCCCC--------CC-cCCCCCC
Q 019280 200 AGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVFKAMLHFIYRDTLTEDVD--------VD-VATPSSS 269 (343)
Q Consensus 200 ~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~--------~~-~~~~~~~ 269 (343)
+|+.|.+-..+.. .|..+.+++...--.. ...|+|+.|...+|..+|.|++...-..... .. ...++..
T Consensus 13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 6788888776654 7888888875211111 2379999999999999999998744321110 00 0000000
Q ss_pred CCCcchHHHHHHHHHHHhhhChHhHHHHHHHHHhccC---ChhhHHHHH
Q 019280 270 CMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDI---SVNSVAKIL 315 (343)
Q Consensus 270 ~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i---~~~~~~~~l 315 (343)
=-. -....+.+|..||+++++++|...|.+.+...+ +++.....+
T Consensus 92 Flk-~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f 139 (162)
T KOG1724|consen 92 FLK-VDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIF 139 (162)
T ss_pred HHh-cCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHc
Confidence 000 123358899999999999999999999876544 444444443
No 47
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=94.58 E-value=0.016 Score=52.24 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=104.1
Q ss_pred cEEEEeCCeeEEeeehhhhccCHhHHhhcCCccccc-cceEEecCCCHHHHHHHhhhhccCCCCCCCCCCcCCCCCCCCC
Q 019280 194 DITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCMS 272 (343)
Q Consensus 194 Dv~~~v~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~~~~~~ 272 (343)
|.++...+..+.+|+.+|+..|+.|..+....-..+ ...+.+-.+....+..+.+++|.. +..-
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~-------------- 92 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKH-------------- 92 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhh--------------
Confidence 455556777899999999999999998887652333 667788888999999999999987 3221
Q ss_pred cchHHHHHHHHHHHhhhChHhHHHHHHHHHhc-cCChhhHHHHHHHHhhcCchHHHHHHHHHHHhcc
Q 019280 273 SVSDTLTAKLLAAADRYGLERLRLMCGSHLCK-DISVNSVAKILSLADEHHATELKAVCLRFAAENL 338 (343)
Q Consensus 273 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~-~i~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~ 338 (343)
.-..+...|+.+...|.++.++..|...+.. .++..++...+..+..+....|...+...+...|
T Consensus 93 -e~~~~~ihll~~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~ 158 (319)
T KOG1778|consen 93 -EMVFFDIHLLALSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLF 158 (319)
T ss_pred -HHHHHHHHHHhhhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2245578888888999999999999998865 5678899999999999999999998888777544
No 48
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.19 E-value=0.18 Score=40.39 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=73.2
Q ss_pred CcEEEEeCCeeEEeeehhhhccC-HhHHhhcCCccccc----cceEEecCCCHHHHHHHhhhhccCCCCCCCCCCcCCCC
Q 019280 193 SDITFDVAGEKFPAHKLVLAARS-PIFRSKFFDELEED----KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPS 267 (343)
Q Consensus 193 ~Dv~~~v~~~~~~~hk~iL~~~S-~~F~~~~~~~~~e~----~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~ 267 (343)
.=|.|.|||..|.--|.-|..-+ .|...+....+.-. ..--.+-|-+|.-|--+|+|+-.|++.++.-.
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~------ 94 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLS------ 94 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhh------
Confidence 34777899999999999999888 45555555432222 23345567899999999999999998775532
Q ss_pred CCCCCcchHHHHHHHHHHHhhhChHhHHHHHHHHHhcc
Q 019280 268 SSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKD 305 (343)
Q Consensus 268 ~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 305 (343)
-..+|.-|+.|.++.|..+..+.|...
T Consensus 95 -----------eeGvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 95 -----------EEGVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred -----------hhccchhhhccCChHHHHHHHHHHHHH
Confidence 567889999999999999988887654
No 49
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.56 Score=35.88 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=72.4
Q ss_pred cEEEEe-CCeeEEeeehhhhccCHhHHhhcCCccccccceEEecCCCHHHHHHHhhhhccCCCCCCCCCCcCCCCCCCCC
Q 019280 194 DITFDV-AGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCMS 272 (343)
Q Consensus 194 Dv~~~v-~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~~~~~~ 272 (343)
-+.++. +|+.|.+.+. .|-||-..+.|+... .+....|+++.+...+|+.++.|+-...-....+.+++......+.
T Consensus 3 ~i~l~s~dge~F~vd~~-iAerSiLikN~l~d~-~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~ 80 (158)
T COG5201 3 MIELESIDGEIFRVDEN-IAERSILIKNMLCDS-TACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPS 80 (158)
T ss_pred ceEEEecCCcEEEehHH-HHHHHHHHHHHhccc-cccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCc
Confidence 344543 6778887765 466888888887531 1114567888999999999999995544333322211111100000
Q ss_pred c--------chHHHHHHHHHHHhhhChHhHHHHHHHHHhccCC
Q 019280 273 S--------VSDTLTAKLLAAADRYGLERLRLMCGSHLCKDIS 307 (343)
Q Consensus 273 ~--------~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~ 307 (343)
. -+.+++.++..+|+++.++.|.++|.+.+.+.+.
T Consensus 81 D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 81 DFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred cHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 0 1245678888899999999999999998766543
No 50
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=90.44 E-value=0.53 Score=33.18 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhChHhHHHHHHHHHhcc---CChhhHHHHHHHHhhcCchH
Q 019280 277 TLTAKLLAAADRYGLERLRLMCGSHLCKD---ISVNSVAKILSLADEHHATE 325 (343)
Q Consensus 277 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~---i~~~~~~~~l~~a~~~~~~~ 325 (343)
..+.+|+.+|++++++.|...|.+.+... .+++-+..++.+...+...+
T Consensus 14 ~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~ee 65 (78)
T PF01466_consen 14 DELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEE 65 (78)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHH
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHH
Confidence 45999999999999999999999987554 45666666677766655433
No 51
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=87.02 E-value=2.2 Score=36.39 Aligned_cols=95 Identities=20% Similarity=0.234 Sum_probs=60.9
Q ss_pred CCCc-EEEEeCCeeEEeeehhhh-ccCHhHHhhcCCccccc---cceEEecCCCHHHHHHHhhhhccCCCCCCCCCCcCC
Q 019280 191 ESSD-ITFDVAGEKFPAHKLVLA-ARSPIFRSKFFDELEED---KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVAT 265 (343)
Q Consensus 191 ~~~D-v~~~v~~~~~~~hk~iL~-~~S~~F~~~~~~~~~e~---~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~ 265 (343)
.+.| +.+.|||+-|.....-|. -.-..+..||.+...-. +....| |-+-..|+.+|+|+-+....+...
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~----- 79 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPED----- 79 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchh-----
Confidence 3556 445567766654444233 33456777777533222 344444 557789999999999955444332
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhhChHhHHHHHHHH
Q 019280 266 PSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSH 301 (343)
Q Consensus 266 ~~~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 301 (343)
-..+..|...|+.|+++.+..++.+-
T Consensus 80 ----------f~e~~~L~rEA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 80 ----------FAEVERLVREAEFFQLEAPVTYLLNS 105 (221)
T ss_pred ----------hhhHHHHHHHHHHHccccHHHHHhcc
Confidence 11289999999999999887766653
No 52
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=81.08 E-value=4.7 Score=29.50 Aligned_cols=59 Identities=25% Similarity=0.424 Sum_probs=38.0
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHhccC------------ChhhHHHHHHHHhh--cCchHHHHHHHHHHHhcc
Q 019280 280 AKLLAAADRYGLERLRLMCGSHLCKDI------------SVNSVAKILSLADE--HHATELKAVCLRFAAENL 338 (343)
Q Consensus 280 ~~ll~~A~~~~~~~l~~~c~~~l~~~i------------~~~~~~~~l~~a~~--~~~~~L~~~~~~~i~~~~ 338 (343)
.+++.+|+.|+.+.|...|.+++..+. +.+.+..++.--.. .+...+-+.+++|+..+.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~ 74 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNP 74 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCH
Confidence 468889999999999999999987753 23334444442221 233467788888887654
No 53
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=80.57 E-value=4 Score=36.26 Aligned_cols=87 Identities=15% Similarity=0.264 Sum_probs=60.6
Q ss_pred cCCCCcEEEEeCCeeEEeeehhhhccC-HhHHhhcCCcccc--c--cceEEe-cCCCHHHHHHHhhhhccCCCCCCCCCC
Q 019280 189 NAESSDITFDVAGEKFPAHKLVLAARS-PIFRSKFFDELEE--D--KQEIII-SDLEPKVFKAMLHFIYRDTLTEDVDVD 262 (343)
Q Consensus 189 ~~~~~Dv~~~v~~~~~~~hk~iL~~~S-~~F~~~~~~~~~e--~--~~~i~l-~~~~~~~~~~~L~~iY~~~~~~~~~~~ 262 (343)
.+..--++..+++.+|-+.+.+|.+.- ...-.||.+++.- . ..+.++ ++++..+|+++|+|--+|.+.-...
T Consensus 92 pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~-- 169 (438)
T KOG3840|consen 92 PGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSS-- 169 (438)
T ss_pred CCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCC--
Confidence 445567899999999999999998763 2445666554322 2 556666 4799999999999999986543332
Q ss_pred cCCCCCCCCCcchHHHHHHHHHHHhhhCh
Q 019280 263 VATPSSSCMSSVSDTLTAKLLAAADRYGL 291 (343)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~ll~~A~~~~~ 291 (343)
++ +.+|-+++|++.+
T Consensus 170 -vS-------------vpELrEACDYLli 184 (438)
T KOG3840|consen 170 -VS-------------VSELREACDYLLV 184 (438)
T ss_pred -Cc-------------hHHHHhhcceEEe
Confidence 11 6777777776654
No 54
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=78.73 E-value=2.9 Score=31.01 Aligned_cols=31 Identities=39% Similarity=0.598 Sum_probs=28.4
Q ss_pred ChhhHHHHHHHHhhcCchHHHHHHHHHHHhc
Q 019280 307 SVNSVAKILSLADEHHATELKAVCLRFAAEN 337 (343)
Q Consensus 307 ~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~ 337 (343)
+.+++..++.+|..++.+.|++.|.+++.++
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 3788999999999999999999999999876
No 55
>PHA02713 hypothetical protein; Provisional
Probab=64.23 E-value=16 Score=36.27 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=32.5
Q ss_pred cCChhhHHHHHHHHhhcCchHHHHHHHHHHHhccc
Q 019280 305 DISVNSVAKILSLADEHHATELKAVCLRFAAENLA 339 (343)
Q Consensus 305 ~i~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~ 339 (343)
.++.+|+..+|..|+.++.+.|++.|.+|+..++.
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~ 124 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTN 124 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCC
Confidence 47899999999999999999999999999998765
No 56
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=62.21 E-value=24 Score=25.29 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.1
Q ss_pred HHHHHHhhhChHhHHHHHHHHHhcc
Q 019280 281 KLLAAADRYGLERLRLMCGSHLCKD 305 (343)
Q Consensus 281 ~ll~~A~~~~~~~l~~~c~~~l~~~ 305 (343)
+++.+|+.|+.+.|.+.|.+++.++
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHH
Confidence 5677889999999999999987664
No 57
>PHA03098 kelch-like protein; Provisional
Probab=62.13 E-value=9.5 Score=37.46 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=31.8
Q ss_pred cCChhhHHHHHHHHhhcCchHHHHHHHHHHHhccc
Q 019280 305 DISVNSVAKILSLADEHHATELKAVCLRFAAENLA 339 (343)
Q Consensus 305 ~i~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~ 339 (343)
.++.+|+.+++..|++++.+.|++.|.+|+.+++.
T Consensus 72 ~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~ 106 (534)
T PHA03098 72 NITSNNVKDILSIANYLIIDFLINLCINYIIKIID 106 (534)
T ss_pred EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 46889999999999999999999999999997754
No 58
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=60.80 E-value=1.8 Score=38.99 Aligned_cols=39 Identities=15% Similarity=0.311 Sum_probs=35.8
Q ss_pred ccCChhhHHHHHHHHhhcCchHHHHHHHHHHHhcccCCC
Q 019280 304 KDISVNSVAKILSLADEHHATELKAVCLRFAAENLAGTD 342 (343)
Q Consensus 304 ~~i~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~ 342 (343)
..++++|++.+|.-++....+.|.+.|+.|+..|+.+|.
T Consensus 70 p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv 108 (317)
T PF11822_consen 70 PSLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIV 108 (317)
T ss_pred CcCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHH
Confidence 367999999999999999999999999999999988764
No 59
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=58.73 E-value=13 Score=35.42 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=32.1
Q ss_pred cCChhhHHHHHHHHhhcCchHHHHHHHHHHHhcccC
Q 019280 305 DISVNSVAKILSLADEHHATELKAVCLRFAAENLAG 340 (343)
Q Consensus 305 ~i~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~ 340 (343)
.+..+|++.+|..|++|..+.|.+.|++||..+..+
T Consensus 184 ~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~ 219 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMA 219 (521)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 357899999999999999999999999999977543
No 60
>PHA02790 Kelch-like protein; Provisional
Probab=52.15 E-value=13 Score=36.09 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=32.1
Q ss_pred cCChhhHHHHHHHHhhcCchHHHHHHHHHHHhccc
Q 019280 305 DISVNSVAKILSLADEHHATELKAVCLRFAAENLA 339 (343)
Q Consensus 305 ~i~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~ 339 (343)
.|+.+|+.++|..|..++.+.+++.|.+|+.+++.
T Consensus 87 ~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~ 121 (480)
T PHA02790 87 YIDSHNVVNLLRASILTSVEFIIYTCINFILRDFR 121 (480)
T ss_pred EEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 46889999999999999999999999999998764
No 61
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=41.26 E-value=21 Score=33.24 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHhcc
Q 019280 279 TAKLLAAADRYGLERLRLMCGSHLCKD 305 (343)
Q Consensus 279 ~~~ll~~A~~~~~~~l~~~c~~~l~~~ 305 (343)
+...+.+|.+|+++.++..|.++|..+
T Consensus 175 a~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 175 ACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred hhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999999998653
No 62
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=40.16 E-value=52 Score=25.14 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=36.3
Q ss_pred CCeeEEeeehhhhccCHhHHhhcCCccccc--cceEEec-CC--CHHHHHHHhhhhccCCCCCCC
Q 019280 200 AGEKFPAHKLVLAARSPIFRSKFFDELEED--KQEIIIS-DL--EPKVFKAMLHFIYRDTLTEDV 259 (343)
Q Consensus 200 ~~~~~~~hk~iL~~~S~~F~~~~~~~~~e~--~~~i~l~-~~--~~~~~~~~L~~iY~~~~~~~~ 259 (343)
++..+.+|-.+++++||.+..-= +.-+ -..+..+ |+ --+..+..|.++|.+.-....
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~---f~IpY~~~~ii~PFDFNglEe~I~~~l~~mY~~s~~~ef 81 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKK---FIIPYTHEGIIPPFDFNGLEEGIKNTLKIMYKDSKIEEF 81 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEE---EEEeccCCCeECCcccCcHHHHHHHHHHHHhCCCCcccc
Confidence 57799999999999999876421 1111 0111111 22 246788999999998754443
No 63
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=33.38 E-value=48 Score=33.00 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=31.3
Q ss_pred cCChhhHHHHHHHHhhcCchHHHHHHHHHHHhcc
Q 019280 305 DISVNSVAKILSLADEHHATELKAVCLRFAAENL 338 (343)
Q Consensus 305 ~i~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~ 338 (343)
.|+.+|+..++..|..++...+++.|.+|+.+++
T Consensus 101 ~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l 134 (571)
T KOG4441|consen 101 EISEDNVQELLEAASLLQIPEVVDACCEFLESQL 134 (571)
T ss_pred EechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4688899999999999999999999999999765
No 64
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=28.43 E-value=1.2e+02 Score=22.36 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=36.9
Q ss_pred cEEEEeCC--eeEEeeehhhhccCHhHHhhcCCccccc----cceEEecCCCHHHHHHHhhhh
Q 019280 194 DITFDVAG--EKFPAHKLVLAARSPIFRSKFFDELEED----KQEIIISDLEPKVFKAMLHFI 250 (343)
Q Consensus 194 Dv~~~v~~--~~~~~hk~iL~~~S~~F~~~~~~~~~e~----~~~i~l~~~~~~~~~~~L~~i 250 (343)
=+.+.||. ++|-++..+| ..|.|+.++...-.|- ...|.|+ .+...|+.+|..|
T Consensus 40 ~~~VyVG~~~~Rfvvp~~~L--~hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 40 HFAVYVGEERRRFVVPVSYL--NHPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred eEEEEeCccceEEEechHHc--CchhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 35556654 6787887777 4789999996433321 4556665 7888888888765
No 65
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=27.61 E-value=1.9e+02 Score=19.99 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=29.8
Q ss_pred HHHhccCChhhHHHHHHHHhhcCchHHHHHHHHHHHhccc
Q 019280 300 SHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAENLA 339 (343)
Q Consensus 300 ~~l~~~i~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~ 339 (343)
+|+ .++.+.+..++..|...+...|.+.|.++|+..+.
T Consensus 7 ~F~--~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 7 EFL--DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp HHT---S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT
T ss_pred HHH--HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc
Confidence 445 45888899999999999999999999999986553
Done!