BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019282
(343 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8GPG7|RSMA_RICAH Ribosomal RNA small subunit methyltransferase A OS=Rickettsia akari
(strain Hartford) GN=rsmA PE=3 SV=1
Length = 273
Score = 39.3 bits (90), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 152 VEEHHSN----YGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPEN 207
V H N +G+ + + + + ASH+ NS VLEIG GT + ++ NPE+
Sbjct: 9 VASHQINPLKKHGQNFIFDSSLCDKIVRASHLAENSRVLEIGPGTGGLTRSILQK-NPES 67
Query: 208 FHCLERDE--LSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFL 265
+E DE + L+ + P+ ++ + + + D+D+ K ++ +L Y
Sbjct: 68 LTVIETDERFIPLLNEIKEYYPNLNIIKQDALKINLTDLDYDKV--TIISNLPY------ 119
Query: 266 HMPDKLV--WVGLERLASKL 283
H+ +LV W+ RL + +
Sbjct: 120 HIGTELVIRWLKEARLITDM 139
>sp|B1XQE1|PIMT_SYNP2 Protein-L-isoaspartate O-methyltransferase OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=pcm PE=3 SV=1
Length = 222
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 169 VFEFLAEASHITPNSHVLEIGCG 191
+ ++ EA+H+TP+S VLEIG G
Sbjct: 76 IVAYMTEAAHLTPSSKVLEIGTG 98
>sp|P57748|MMP20_MOUSE Matrix metalloproteinase-20 OS=Mus musculus GN=Mmp20 PE=2 SV=1
Length = 482
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 56/152 (36%), Gaps = 24/152 (15%)
Query: 146 CPGELLVEEHHSNYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHF--IRYL 203
PGE L + H + E W G + F A+H H L +G T + + +Y
Sbjct: 193 APGEGLGGDTHFDNAEKWTMGTNGFNLFTVAAHEF--GHALGLGHSTDPSALMYPTYKYQ 250
Query: 204 NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAV 263
NP FH L +D++ + Q L R I M + DL +S+
Sbjct: 251 NPYRFH-LPKDDVKGI---------QALYGPRKIFPGKPTMPHIPPHKPSIPDLCDSSSS 300
Query: 264 F----------LHMPDKLVWVGLERLASKLRP 285
F L D++ W L + +RP
Sbjct: 301 FDAVTMLGKELLFFKDRIFWRRQVHLPTGIRP 332
>sp|Q9UU96|GRC3_SCHPO Polynucleotide 5'-hydroxyl-kinase grc3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=grc3 PE=1 SV=1
Length = 736
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 38 LSTCNCPLSSTTTDAANAVRNGAVSDFARSEDDSSSSSRRFSERTSATKEDIEWVRDQIH 97
+ + N PLS A AVR +S AR +D+SS R SE S K + E +
Sbjct: 7 IESSNVPLS------AFAVRQLTLSKAARKKDNSSGKKRSVSEEESQDKYEDEMKTEGEF 60
Query: 98 KNGLHMQDNVLRKGINPRTR 117
+ H V+ G++ RT+
Sbjct: 61 PSYKHTLVQVVVPGVDHRTK 80
>sp|Q8DQG7|RLMN_STRR6 Probable dual-specificity RNA methyltransferase RlmN
OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
GN=rlmN PE=3 SV=1
Length = 361
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 146 CPGELLVEEHHSNYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP 205
C +L+ ++ N GE A V ++ AE SH++ +G +G F Y N
Sbjct: 118 CASDLIKKQRDLNNGEIVAQIMLVQKYFAERGQDERVSHIVVMG-----IGEPFDNYNNV 172
Query: 206 ENFHCLERDELSLMAAFRY-ELPSQGLLHK 234
NF C D+ + R+ + + GL HK
Sbjct: 173 LNFVCTINDDKGMAIGARHITVSTSGLAHK 202
>sp|Q04LD5|RLMN_STRP2 Probable dual-specificity RNA methyltransferase RlmN
OS=Streptococcus pneumoniae serotype 2 (strain D39 /
NCTC 7466) GN=rlmN PE=3 SV=1
Length = 361
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 146 CPGELLVEEHHSNYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP 205
C +L+ ++ N GE A V ++ AE SH++ +G +G F Y N
Sbjct: 118 CASDLIKKQRDLNNGEIVAQIMLVQKYFAERGQDERVSHIVVMG-----IGEPFDNYNNV 172
Query: 206 ENFHCLERDELSLMAAFRY-ELPSQGLLHK 234
NF C D+ + R+ + + GL HK
Sbjct: 173 LNFVCTINDDKGMAIGARHITVSTSGLAHK 202
>sp|Q97QT2|DNLJ_STRPN DNA ligase OS=Streptococcus pneumoniae serotype 4 (strain ATCC
BAA-334 / TIGR4) GN=ligA PE=3 SV=1
Length = 652
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 79 SERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQDLIQF 127
S+R S K DI + + LH +D V + INPR AQ ++ LI F
Sbjct: 381 SKRVSEEKLDIPTNCPSCNSDLLHFEDEVALRCINPRCPAQIMEGLIHF 429
>sp|B1IBQ3|DNLJ_STRPI DNA ligase OS=Streptococcus pneumoniae (strain Hungary19A-6)
GN=ligA PE=3 SV=1
Length = 652
Score = 32.0 bits (71), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 79 SERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQDLIQF 127
S+R S K DI + + LH +D V + INPR AQ ++ LI F
Sbjct: 381 SKRVSEEKLDIPTNCPSCNSDLLHFEDEVALRCINPRCPAQIMEGLIHF 429
>sp|Q8DPS9|DNLJ_STRR6 DNA ligase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
GN=ligA PE=3 SV=1
Length = 652
Score = 32.0 bits (71), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 79 SERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQDLIQF 127
S+R S K DI + + LH +D V + INPR AQ ++ LI F
Sbjct: 381 SKRVSEEKLDIPTNCPSCNSDLLHFEDEVALRCINPRCPAQIMEGLIHF 429
>sp|Q04KH2|DNLJ_STRP2 DNA ligase OS=Streptococcus pneumoniae serotype 2 (strain D39 /
NCTC 7466) GN=ligA PE=3 SV=1
Length = 652
Score = 32.0 bits (71), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 79 SERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQDLIQF 127
S+R S K DI + + LH +D V + INPR AQ ++ LI F
Sbjct: 381 SKRVSEEKLDIPTNCPSCNSDLLHFEDEVALRCINPRCPAQIMEGLIHF 429
>sp|C1CRL7|DNLJ_STRZT DNA ligase OS=Streptococcus pneumoniae (strain Taiwan19F-14)
GN=ligA PE=3 SV=1
Length = 652
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 79 SERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQDLIQF 127
S+R S K DI + + LH +D V + INPR AQ ++ LI F
Sbjct: 381 SKRVSEEKLDIPTNCPSCNSDLLHFEDEVALRCINPRCPAQIMEGLIHF 429
>sp|C1CKI0|DNLJ_STRZP DNA ligase OS=Streptococcus pneumoniae (strain P1031) GN=ligA PE=1
SV=1
Length = 652
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 79 SERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQDLIQF 127
S+R S K DI + + LH +D V + INPR AQ ++ LI F
Sbjct: 381 SKRVSEEKLDIPTNCPSCNSDLLHFEDEVALRCINPRCPAQIMEGLIHF 429
>sp|B2IPZ1|DNLJ_STRPS DNA ligase OS=Streptococcus pneumoniae (strain CGSP14) GN=ligA PE=3
SV=1
Length = 652
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 79 SERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQDLIQF 127
S+R S K DI + + LH +D V + INPR AQ ++ LI F
Sbjct: 381 SKRVSEEKLDIPTNCPSCNSDLLHFEDEVALRCINPRCPAQIMEGLIHF 429
>sp|B5E4M9|DNLJ_STRP4 DNA ligase OS=Streptococcus pneumoniae serotype 19F (strain G54)
GN=ligA PE=3 SV=1
Length = 652
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 79 SERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQDLIQF 127
S+R S K DI + + LH +D V + INPR AQ ++ LI F
Sbjct: 381 SKRVSEEKLDIPTNCPSCNSDLLHFEDEVALRCINPRCPAQIMEGLIHF 429
>sp|C1CEA4|DNLJ_STRZJ DNA ligase OS=Streptococcus pneumoniae (strain JJA) GN=ligA PE=3
SV=1
Length = 652
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 79 SERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQDLIQF 127
S+R S K DI + + LH +D V + INPR AQ ++ LI F
Sbjct: 381 SKRVSEEKLDIPTNCPSCNSDLLHFEDEVALRCINPRCPAQIMEGLIHF 429
>sp|B8ZPV9|DNLJ_STRPJ DNA ligase OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain
23F-1) GN=ligA PE=3 SV=1
Length = 652
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 79 SERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQDLIQF 127
S+R S K DI + + LH +D V + INPR AQ ++ LI F
Sbjct: 381 SKRVSEEKLDIPTNCPSCNSDLLHFEDEVALRCINPRCPAQIMEGLIHF 429
>sp|C1C7B1|DNLJ_STRP7 DNA ligase OS=Streptococcus pneumoniae (strain 70585) GN=ligA PE=3
SV=1
Length = 652
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 79 SERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQDLIQF 127
S+R S K DI + + LH +D V + INPR AQ ++ LI F
Sbjct: 381 SKRVSEEKLDIPTNCPSCNSDLLHFEDEVALRCINPRCPAQIMEGLIHF 429
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,786,993
Number of Sequences: 539616
Number of extensions: 5395018
Number of successful extensions: 13035
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 13018
Number of HSP's gapped (non-prelim): 24
length of query: 343
length of database: 191,569,459
effective HSP length: 118
effective length of query: 225
effective length of database: 127,894,771
effective search space: 28776323475
effective search space used: 28776323475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)