Query 019282 Match_columns 343 No_of_seqs 307 out of 2522 Neff 7.5 Searched_HMMs 46136 Date Fri Mar 29 08:11:41 2013 Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019282.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019282hhsearch_cdd -cpu 12 -v 0 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PF02353 CMAS: Mycolic acid cy 99.8 9.8E-20 2.1E-24 170.5 13.5 150 165-324 46-218 (273) 2 COG2230 Cfa Cyclopropane fatty 99.8 4.5E-19 9.7E-24 164.8 13.9 167 165-341 56-244 (283) 3 COG2226 UbiE Methylase involve 99.7 8.1E-17 1.7E-21 147.1 14.3 141 172-320 42-221 (238) 4 PLN02244 tocopherol O-methyltr 99.7 2E-16 4.3E-21 153.0 16.7 155 165-327 97-282 (340) 5 PTZ00098 phosphoethanolamine N 99.7 4E-16 8.7E-21 145.7 17.1 157 161-326 31-205 (263) 6 PF01209 Ubie_methyltran: ubiE 99.7 1.6E-16 3.6E-21 145.6 9.7 140 176-322 42-219 (233) 7 PLN02233 ubiquinone biosynthes 99.7 5.7E-15 1.2E-19 137.8 18.7 142 175-323 67-248 (261) 8 PLN02396 hexaprenyldihydroxybe 99.6 1.4E-15 3.1E-20 145.5 13.3 136 180-324 130-290 (322) 9 PRK11036 putative S-adenosyl-L 99.6 3.1E-15 6.7E-20 138.9 14.8 141 172-322 36-206 (255) 10 TIGR00452 methyltransferase, p 99.6 7.6E-15 1.6E-19 140.0 16.1 160 169-337 109-289 (314) 11 PRK14103 trans-aconitate 2-met 99.6 1.2E-14 2.6E-19 134.9 17.0 136 171-322 19-183 (255) 12 PF13489 Methyltransf_23: Meth 99.6 2.4E-15 5.1E-20 128.5 11.2 131 170-320 10-160 (161) 13 PRK15068 tRNA mo(5)U34 methylt 99.6 1.2E-14 2.5E-19 139.6 15.7 160 169-337 110-290 (322) 14 PRK11207 tellurite resistance 99.6 1.7E-14 3.6E-19 129.1 14.7 133 177-321 26-168 (197) 15 TIGR02752 MenG_heptapren 2-hep 99.6 4.9E-14 1.1E-18 128.5 17.4 147 171-325 35-220 (231) 16 PLN02336 phosphoethanolamine N 99.6 4.2E-14 9E-19 142.6 18.1 158 169-336 254-427 (475) 17 PRK11705 cyclopropane fatty ac 99.6 5.3E-14 1.1E-18 138.0 17.9 145 165-323 151-312 (383) 18 PRK15451 tRNA cmo(5)U34 methyl 99.6 9.8E-15 2.1E-19 135.0 11.8 110 179-293 54-163 (247) 19 COG2227 UbiG 2-polyprenyl-3-me 99.6 4.5E-15 9.7E-20 134.1 8.5 138 180-328 58-220 (243) 20 KOG1270 Methyltransferases [Co 99.6 9.1E-15 2E-19 133.1 9.4 145 182-335 90-261 (282) 21 TIGR00740 methyltransferase, p 99.6 4.2E-14 9.2E-19 130.0 13.5 137 179-320 51-224 (239) 22 TIGR00477 tehB tellurite resis 99.6 6.4E-14 1.4E-18 125.1 13.9 133 177-322 26-168 (195) 23 PRK01683 trans-aconitate 2-met 99.5 2.7E-13 5.8E-18 125.8 17.7 138 169-320 19-184 (258) 24 KOG1540 Ubiquinone biosynthesi 99.5 1.6E-13 3.4E-18 124.4 14.9 144 171-320 90-278 (296) 25 PLN02490 MPBQ/MSBQ methyltrans 99.5 2.9E-13 6.4E-18 130.2 17.7 143 171-324 102-257 (340) 26 PF12847 Methyltransf_18: Meth 99.5 7.3E-14 1.6E-18 112.6 11.4 109 181-294 1-111 (112) 27 smart00828 PKS_MT Methyltransf 99.5 1.7E-13 3.6E-18 124.4 14.4 133 183-324 1-145 (224) 28 PRK11873 arsM arsenite S-adeno 99.5 3E-13 6.5E-18 126.6 16.4 147 177-331 73-238 (272) 29 PRK08317 hypothetical protein; 99.5 8E-13 1.7E-17 119.9 17.3 147 169-324 7-177 (241) 30 PF08241 Methyltransf_11: Meth 99.5 1.7E-13 3.6E-18 106.3 10.6 95 186-292 1-95 (95) 31 TIGR02716 C20_methyl_CrtF C-20 99.5 1.2E-12 2.6E-17 124.8 17.1 144 169-321 137-304 (306) 32 PRK10258 biotin biosynthesis p 99.5 1.7E-12 3.7E-17 120.1 17.0 138 166-318 27-182 (251) 33 TIGR02021 BchM-ChlM magnesium 99.5 7.3E-13 1.6E-17 120.1 14.1 136 179-324 53-207 (219) 34 PRK12335 tellurite resistance 99.5 6.2E-13 1.3E-17 125.7 13.8 129 181-322 120-258 (287) 35 PF03848 TehB: Tellurite resis 99.5 9.1E-13 2E-17 116.9 12.9 133 176-321 25-167 (192) 36 PF08242 Methyltransf_12: Meth 99.4 4.5E-14 9.8E-19 111.8 3.2 99 186-290 1-99 (99) 37 PF13847 Methyltransf_31: Meth 99.4 6.8E-13 1.5E-17 113.4 10.4 108 180-295 2-111 (152) 38 PF08003 Methyltransf_9: Prote 99.4 1.7E-12 3.6E-17 121.4 13.6 160 169-338 103-284 (315) 39 PRK00216 ubiE ubiquinone/menaq 99.4 1.1E-11 2.4E-16 112.8 18.1 144 173-323 43-225 (239) 40 PRK04266 fibrillarin; Provisio 99.4 9.8E-12 2.1E-16 113.6 15.3 147 176-333 67-220 (226) 41 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 3E-11 6.4E-16 108.8 17.9 142 172-323 30-210 (223) 42 PRK06202 hypothetical protein; 99.4 1E-11 2.2E-16 113.6 14.8 136 178-322 57-221 (232) 43 PRK05134 bifunctional 3-demeth 99.4 1.2E-11 2.6E-16 113.0 14.7 143 169-322 36-204 (233) 44 PF13649 Methyltransf_25: Meth 99.4 1.3E-12 2.9E-17 103.9 7.2 98 185-288 1-101 (101) 45 TIGR00138 gidB 16S rRNA methyl 99.4 8.3E-12 1.8E-16 110.3 12.8 126 181-325 42-171 (181) 46 PRK00107 gidB 16S rRNA methylt 99.4 2.7E-11 5.8E-16 107.5 15.4 134 169-320 33-166 (187) 47 PRK08287 cobalt-precorrin-6Y C 99.3 2.2E-11 4.9E-16 107.7 14.6 139 167-323 17-156 (187) 48 PRK07580 Mg-protoporphyrin IX 99.3 3.1E-11 6.6E-16 109.7 15.7 136 179-324 61-215 (230) 49 TIGR03840 TMPT_Se_Te thiopurin 99.3 4.2E-11 9E-16 108.5 16.4 136 178-322 31-186 (213) 50 TIGR02072 BioC biotin biosynth 99.3 3.8E-11 8.3E-16 109.0 16.2 130 180-322 33-175 (240) 51 PLN02585 magnesium protoporphy 99.3 2.4E-11 5.2E-16 116.1 15.2 132 181-323 144-299 (315) 52 PLN02336 phosphoethanolamine N 99.3 1.6E-11 3.5E-16 123.8 14.4 143 171-322 27-181 (475) 53 TIGR01983 UbiG ubiquinone bios 99.3 2.3E-11 5.1E-16 110.2 14.0 136 181-325 45-205 (224) 54 KOG4300 Predicted methyltransf 99.3 7.3E-12 1.6E-16 110.4 9.7 149 166-323 61-232 (252) 55 KOG2361 Predicted methyltransf 99.3 9.8E-12 2.1E-16 112.0 10.8 152 184-338 74-258 (264) 56 PF05401 NodS: Nodulation prot 99.3 1.7E-11 3.6E-16 108.2 11.7 127 177-314 39-171 (201) 57 smart00138 MeTrc Methyltransfe 99.3 1.9E-11 4.1E-16 114.3 12.8 126 166-295 84-243 (264) 58 TIGR02469 CbiT precorrin-6Y C5 99.3 3.3E-11 7.1E-16 98.3 12.1 116 168-294 6-122 (124) 59 TIGR00537 hemK_rel_arch HemK-r 99.3 6.3E-11 1.4E-15 104.1 14.6 132 178-324 16-166 (179) 60 TIGR02081 metW methionine bios 99.3 3.4E-11 7.3E-16 107.3 13.0 143 179-337 11-182 (194) 61 PRK13255 thiopurine S-methyltr 99.3 7.4E-11 1.6E-15 107.3 14.5 137 177-322 33-189 (218) 62 PRK13944 protein-L-isoaspartat 99.3 4.4E-11 9.6E-16 107.6 12.5 115 167-294 58-173 (205) 63 PRK00121 trmB tRNA (guanine-N( 99.3 3.2E-11 7E-16 108.3 11.4 130 181-319 40-177 (202) 64 PRK05785 hypothetical protein; 99.3 4.6E-11 9.9E-16 109.2 12.0 92 180-288 50-141 (226) 65 TIGR03438 probable methyltrans 99.3 1.2E-10 2.5E-15 111.0 15.2 111 179-292 61-175 (301) 66 COG4106 Tam Trans-aconitate me 99.2 3E-11 6.5E-16 107.3 9.4 107 173-293 22-128 (257) 67 TIGR03587 Pse_Me-ase pseudamin 99.2 1.6E-10 3.4E-15 104.0 14.0 102 178-293 40-141 (204) 68 PRK06922 hypothetical protein; 99.2 7.7E-11 1.7E-15 120.7 13.0 113 177-294 414-537 (677) 69 PF05891 Methyltransf_PK: AdoM 99.2 2E-11 4.4E-16 109.3 7.2 146 182-336 56-214 (218) 70 PRK09328 N5-glutamine S-adenos 99.2 2.7E-09 5.7E-14 99.8 21.6 142 168-321 95-260 (275) 71 PF05175 MTS: Methyltransferas 99.2 6.7E-11 1.5E-15 103.3 9.8 108 181-295 31-141 (170) 72 TIGR00536 hemK_fam HemK family 99.2 2.2E-09 4.8E-14 101.4 20.7 129 182-321 115-267 (284) 73 PTZ00146 fibrillarin; Provisio 99.2 5.8E-10 1.3E-14 104.8 16.4 143 177-331 128-279 (293) 74 TIGR03533 L3_gln_methyl protei 99.2 3.6E-09 7.8E-14 100.0 22.0 133 180-325 120-276 (284) 75 PRK00377 cbiT cobalt-precorrin 99.2 4.7E-10 1E-14 100.3 15.1 139 168-320 27-167 (198) 76 PRK00517 prmA ribosomal protei 99.2 1.5E-10 3.3E-15 107.2 12.4 139 160-323 100-238 (250) 77 PRK14967 putative methyltransf 99.2 8E-10 1.7E-14 100.6 16.8 142 175-331 30-191 (223) 78 PLN03075 nicotianamine synthas 99.2 1.9E-10 4.1E-15 108.4 12.5 122 165-294 108-233 (296) 79 TIGR03534 RF_mod_PrmC protein- 99.2 7.4E-10 1.6E-14 101.9 16.0 140 169-322 76-240 (251) 80 PRK11088 rrmA 23S rRNA methylt 99.2 2.9E-10 6.2E-15 106.7 13.5 111 165-294 70-181 (272) 81 PRK15001 SAM-dependent 23S rib 99.2 3.2E-10 7E-15 110.7 14.2 116 173-294 220-340 (378) 82 KOG1271 Methyltransferases [Ge 99.2 3.2E-10 7E-15 98.2 12.2 159 160-329 39-211 (227) 83 PRK14968 putative methyltransf 99.2 9.3E-10 2E-14 96.6 15.1 132 179-322 21-172 (188) 84 PF07021 MetW: Methionine bios 99.2 3.7E-10 8E-15 99.5 12.1 130 178-325 10-169 (193) 85 COG2264 PrmA Ribosomal protein 99.2 7.9E-10 1.7E-14 104.0 14.5 153 153-323 136-288 (300) 86 PRK01544 bifunctional N5-gluta 99.2 3.3E-09 7E-14 107.9 20.1 129 181-321 138-291 (506) 87 PRK13942 protein-L-isoaspartat 99.2 4.1E-10 8.8E-15 101.9 12.2 115 166-294 61-176 (212) 88 PRK11805 N5-glutamine S-adenos 99.1 1.1E-08 2.4E-13 97.7 22.1 143 183-338 135-302 (307) 89 COG4123 Predicted O-methyltran 99.1 5.1E-10 1.1E-14 102.7 12.1 139 177-323 40-194 (248) 90 PF06080 DUF938: Protein of un 99.1 1E-09 2.2E-14 97.8 13.3 147 169-321 14-190 (204) 91 TIGR00080 pimt protein-L-isoas 99.1 6E-10 1.3E-14 100.9 12.1 114 167-294 63-177 (215) 92 COG2813 RsmC 16S RNA G1207 met 99.1 1.2E-09 2.7E-14 102.3 14.4 117 171-295 148-267 (300) 93 TIGR00091 tRNA (guanine-N(7)-) 99.1 8.4E-10 1.8E-14 98.4 12.2 132 181-320 16-155 (194) 94 TIGR00406 prmA ribosomal prote 99.1 8.5E-10 1.8E-14 104.4 12.7 144 160-323 140-283 (288) 95 PF06325 PrmA: Ribosomal prote 99.1 8.7E-10 1.9E-14 104.3 12.4 148 153-323 135-283 (295) 96 COG4976 Predicted methyltransf 99.1 1.1E-10 2.4E-15 104.6 5.8 141 170-323 114-265 (287) 97 PRK14121 tRNA (guanine-N(7)-)- 99.1 3.3E-09 7.1E-14 103.6 16.5 114 177-294 118-235 (390) 98 TIGR01177 conserved hypothetic 99.1 1.2E-09 2.6E-14 105.2 13.3 142 164-322 165-314 (329) 99 COG2242 CobL Precorrin-6B meth 99.1 3E-09 6.4E-14 93.2 14.2 150 167-332 20-170 (187) 100 KOG1541 Predicted protein carb 99.1 1.1E-09 2.4E-14 97.6 11.5 137 165-317 32-181 (270) 101 PRK11188 rrmJ 23S rRNA methylt 99.1 2.3E-09 5E-14 96.9 12.7 123 179-323 49-189 (209) 102 PRK09489 rsmC 16S ribosomal RN 99.1 2.5E-09 5.4E-14 103.5 13.8 113 173-295 188-304 (342) 103 PRK07402 precorrin-6B methylas 99.0 2.7E-09 5.9E-14 95.1 11.9 143 166-324 25-171 (196) 104 COG2518 Pcm Protein-L-isoaspar 99.0 2.3E-09 4.9E-14 95.8 11.3 113 166-295 57-170 (209) 105 PHA03411 putative methyltransf 99.0 5E-09 1.1E-13 97.6 14.0 128 180-319 63-210 (279) 106 PF13659 Methyltransf_26: Meth 99.0 8.9E-10 1.9E-14 89.4 7.9 108 182-294 1-115 (117) 107 PRK14966 unknown domain/N5-glu 99.0 9.3E-09 2E-13 101.1 16.4 142 168-322 240-404 (423) 108 PRK00312 pcm protein-L-isoaspa 99.0 4.8E-09 1E-13 94.6 11.8 113 166-295 63-176 (212) 109 TIGR03704 PrmC_rel_meth putati 99.0 2E-08 4.3E-13 93.3 16.1 143 168-322 72-239 (251) 110 PF05724 TPMT: Thiopurine S-me 99.0 7.7E-09 1.7E-13 94.0 12.9 153 167-327 24-194 (218) 111 COG2890 HemK Methylase of poly 99.0 5.6E-08 1.2E-12 91.6 19.2 123 184-320 113-260 (280) 112 PF01135 PCMT: Protein-L-isoas 99.0 1.9E-09 4E-14 97.4 8.7 115 166-295 57-173 (209) 113 COG2519 GCD14 tRNA(1-methylade 98.9 1.3E-08 2.9E-13 92.9 13.3 133 170-321 83-218 (256) 114 PRK01581 speE spermidine synth 98.9 1.3E-08 2.8E-13 98.3 12.4 141 180-324 149-298 (374) 115 PRK00811 spermidine synthase; 98.9 1.6E-08 3.4E-13 95.6 11.6 135 180-319 75-215 (283) 116 PRK13256 thiopurine S-methyltr 98.9 2.8E-08 6E-13 90.6 12.6 139 177-320 39-196 (226) 117 cd02440 AdoMet_MTases S-adenos 98.9 3E-08 6.5E-13 76.3 11.0 103 184-293 1-103 (107) 118 PRK03612 spermidine synthase; 98.9 2E-08 4.3E-13 102.5 12.7 135 180-318 296-439 (521) 119 PRK13168 rumA 23S rRNA m(5)U19 98.9 2.3E-08 5E-13 100.2 13.0 150 166-333 282-435 (443) 120 TIGR00438 rrmJ cell division p 98.9 2.2E-08 4.7E-13 88.7 11.3 132 169-320 20-167 (188) 121 PRK10901 16S rRNA methyltransf 98.9 7.9E-08 1.7E-12 95.9 16.5 154 160-320 223-398 (427) 122 PF00891 Methyltransf_2: O-met 98.9 2.7E-08 5.9E-13 91.4 12.2 109 171-295 90-200 (241) 123 TIGR00563 rsmB ribosomal RNA s 98.8 4.3E-08 9.4E-13 97.8 13.8 153 160-317 217-391 (426) 124 PRK13943 protein-L-isoaspartat 98.8 2.2E-08 4.7E-13 96.1 11.1 113 166-293 65-179 (322) 125 PRK14901 16S rRNA methyltransf 98.8 7.7E-08 1.7E-12 96.2 14.8 156 158-319 229-409 (434) 126 PRK04457 spermidine synthase; 98.8 3.7E-08 8E-13 92.0 11.7 110 179-293 64-176 (262) 127 PF05219 DREV: DREV methyltran 98.8 8.2E-08 1.8E-12 88.3 13.4 125 181-324 94-241 (265) 128 PF08704 GCD14: tRNA methyltra 98.8 7.8E-08 1.7E-12 88.8 13.2 136 170-322 29-170 (247) 129 PLN02366 spermidine synthase 98.8 6.7E-08 1.5E-12 92.2 13.0 137 180-319 90-231 (308) 130 PLN02781 Probable caffeoyl-CoA 98.8 3.3E-08 7.1E-13 90.9 9.8 108 177-293 64-177 (234) 131 PF12147 Methyltransf_20: Puta 98.8 1.4E-07 3E-12 87.9 13.6 141 180-323 134-298 (311) 132 PLN02232 ubiquinone biosynthes 98.8 5.1E-08 1.1E-12 84.3 10.0 106 212-322 2-146 (160) 133 PRK14902 16S rRNA methyltransf 98.8 1.2E-07 2.7E-12 95.0 14.3 155 160-321 229-406 (444) 134 TIGR00417 speE spermidine synt 98.8 8.6E-08 1.9E-12 89.9 12.2 110 181-294 72-186 (270) 135 PF03291 Pox_MCEL: mRNA cappin 98.7 6.5E-08 1.4E-12 93.2 10.6 111 181-293 62-185 (331) 136 KOG3010 Methyltransferase [Gen 98.7 1E-07 2.2E-12 86.4 10.5 106 178-293 29-135 (261) 137 PRK03522 rumB 23S rRNA methylu 98.7 1.1E-07 2.4E-12 91.2 11.2 148 166-333 158-307 (315) 138 PRK14903 16S rRNA methyltransf 98.7 1.5E-07 3.3E-12 93.9 11.7 156 158-320 214-392 (431) 139 PRK14904 16S rRNA methyltransf 98.7 2.1E-07 4.5E-12 93.4 12.6 141 172-320 241-403 (445) 140 smart00650 rADc Ribosomal RNA 98.7 1.6E-07 3.4E-12 81.8 10.1 109 171-294 3-113 (169) 141 PF10294 Methyltransf_16: Puta 98.7 1.4E-07 3.1E-12 82.7 9.5 130 160-295 18-157 (173) 142 TIGR00446 nop2p NOL1/NOP2/sun 98.6 2.6E-07 5.7E-12 86.4 11.6 135 176-317 66-222 (264) 143 PLN02672 methionine S-methyltr 98.6 7E-07 1.5E-11 97.0 16.3 131 182-322 119-302 (1082) 144 COG4122 Predicted O-methyltran 98.6 1.4E-07 3.1E-12 85.3 9.3 112 173-293 51-165 (219) 145 PF02390 Methyltransf_4: Putat 98.6 2.7E-07 5.9E-12 82.5 10.8 129 184-320 20-157 (195) 146 TIGR00479 rumA 23S rRNA (uraci 98.6 2.4E-07 5.2E-12 92.5 11.6 149 166-330 277-427 (431) 147 PLN02476 O-methyltransferase 98.6 2.1E-07 4.5E-12 87.4 9.8 108 177-293 114-227 (278) 148 KOG2899 Predicted methyltransf 98.6 4E-07 8.7E-12 82.5 11.2 139 178-320 55-254 (288) 149 TIGR02085 meth_trns_rumB 23S r 98.6 4.9E-07 1.1E-11 88.8 12.2 148 166-333 218-367 (374) 150 KOG1500 Protein arginine N-met 98.6 4.7E-07 1E-11 85.4 11.4 128 180-316 176-305 (517) 151 COG2521 Predicted archaeal met 98.6 2.4E-07 5.1E-12 83.6 8.7 143 177-323 130-277 (287) 152 PHA03412 putative methyltransf 98.6 8.7E-07 1.9E-11 81.0 12.4 125 181-318 49-197 (241) 153 PRK11783 rlmL 23S rRNA m(2)G24 98.5 3.5E-07 7.5E-12 96.7 10.6 134 180-323 537-680 (702) 154 PF01596 Methyltransf_3: O-met 98.5 1.4E-07 3E-12 85.0 6.1 107 178-293 42-154 (205) 155 PF01739 CheR: CheR methyltran 98.5 5.1E-07 1.1E-11 80.7 8.6 112 180-295 30-176 (196) 156 PRK10611 chemotaxis methyltran 98.5 1.6E-06 3.4E-11 81.9 12.2 110 182-295 116-263 (287) 157 KOG1499 Protein arginine N-met 98.5 5.2E-07 1.1E-11 85.9 8.3 114 173-293 52-166 (346) 158 KOG2904 Predicted methyltransf 98.4 2.1E-06 4.5E-11 79.2 11.1 123 168-295 136-286 (328) 159 PF05148 Methyltransf_8: Hypot 98.4 2.3E-06 5E-11 76.4 11.0 125 167-324 61-186 (219) 160 PRK15128 23S rRNA m(5)C1962 me 98.3 3.7E-06 7.9E-11 83.1 11.6 126 180-312 219-354 (396) 161 PRK11727 23S rRNA mA1618 methy 98.3 2E-05 4.3E-10 75.6 16.2 137 181-320 114-289 (321) 162 KOG2940 Predicted methyltransf 98.3 1.4E-06 3E-11 78.5 7.1 130 183-323 74-227 (325) 163 COG0220 Predicted S-adenosylme 98.3 2.9E-06 6.2E-11 77.5 9.3 109 183-295 50-165 (227) 164 PLN02589 caffeoyl-CoA O-methyl 98.3 2E-06 4.4E-11 79.6 8.3 107 178-293 76-189 (247) 165 TIGR00478 tly hemolysin TlyA f 98.3 2.1E-05 4.5E-10 72.0 14.3 139 166-322 59-216 (228) 166 PF09243 Rsm22: Mitochondrial 98.3 5.8E-06 1.3E-10 77.8 10.8 155 165-326 17-171 (274) 167 KOG1975 mRNA cap methyltransfe 98.3 6E-06 1.3E-10 77.8 10.1 128 178-314 114-250 (389) 168 PRK10909 rsmD 16S rRNA m(2)G96 98.2 9.2E-06 2E-10 72.8 10.8 106 180-295 52-160 (199) 169 PF03141 Methyltransf_29: Puta 98.2 9.9E-07 2.1E-11 87.7 4.6 116 165-295 97-220 (506) 170 PRK14896 ksgA 16S ribosomal RN 98.2 1.2E-05 2.5E-10 75.0 11.5 90 165-265 13-102 (258) 171 KOG1661 Protein-L-isoaspartate 98.2 5.6E-06 1.2E-10 73.7 8.7 115 169-294 68-193 (237) 172 PRK00274 ksgA 16S ribosomal RN 98.2 8.2E-06 1.8E-10 76.6 10.0 88 166-264 27-115 (272) 173 COG1352 CheR Methylase of chem 98.2 1.7E-05 3.7E-10 74.1 12.0 132 165-298 81-245 (268) 174 PRK01544 bifunctional N5-gluta 98.2 1.1E-05 2.3E-10 82.3 10.7 132 181-320 347-485 (506) 175 PRK05031 tRNA (uracil-5-)-meth 98.1 2.5E-05 5.5E-10 76.3 11.7 149 165-334 191-355 (362) 176 PTZ00338 dimethyladenosine tra 98.1 1.8E-05 3.9E-10 75.2 10.3 96 166-271 21-117 (294) 177 PF05185 PRMT5: PRMT5 arginine 98.1 1.3E-05 2.9E-10 80.2 9.9 120 166-292 167-295 (448) 178 COG2263 Predicted RNA methylas 98.1 0.00013 2.7E-09 64.3 14.6 135 167-321 32-166 (198) 179 KOG3045 Predicted RNA methylas 98.1 3.7E-05 8E-10 70.6 11.7 122 166-323 168-291 (325) 180 TIGR00755 ksgA dimethyladenosi 98.1 3.5E-05 7.6E-10 71.5 11.8 94 165-270 13-109 (253) 181 COG0421 SpeE Spermidine syntha 98.1 5.2E-05 1.1E-09 71.5 12.8 118 178-300 74-196 (282) 182 PLN02823 spermine synthase 98.1 2.6E-05 5.5E-10 75.4 10.5 110 181-294 103-220 (336) 183 PF11968 DUF3321: Putative met 98.1 5.5E-05 1.2E-09 68.0 11.7 136 166-326 32-184 (219) 184 PF07942 N2227: N2227-like pro 98.0 0.00014 2.9E-09 68.1 14.4 135 181-323 56-242 (270) 185 KOG3178 Hydroxyindole-O-methyl 98.0 2.6E-05 5.7E-10 74.5 9.2 98 182-294 178-275 (342) 186 TIGR03439 methyl_EasF probable 98.0 0.00017 3.6E-09 69.3 14.6 111 178-293 73-196 (319) 187 TIGR02143 trmA_only tRNA (urac 98.0 8.4E-05 1.8E-09 72.5 12.0 148 166-333 183-345 (353) 188 COG3963 Phospholipid N-methylt 97.9 0.00011 2.3E-09 63.4 10.7 116 169-293 36-155 (194) 189 PRK04338 N(2),N(2)-dimethylgua 97.9 5.8E-05 1.3E-09 74.3 10.0 124 157-293 32-157 (382) 190 PF01564 Spermine_synth: Sperm 97.9 4.2E-05 9.1E-10 70.8 8.5 134 181-317 76-214 (246) 191 PF08123 DOT1: Histone methyla 97.9 0.00014 3E-09 65.5 10.7 118 168-293 29-156 (205) 192 KOG2915 tRNA(1-methyladenosine 97.8 0.0003 6.4E-09 65.2 12.5 139 170-322 94-234 (314) 193 COG1041 Predicted DNA modifica 97.8 0.00037 8E-09 67.0 13.5 141 165-323 181-330 (347) 194 COG2265 TrmA SAM-dependent met 97.8 0.00011 2.3E-09 73.4 10.2 152 165-333 277-431 (432) 195 PRK00536 speE spermidine synth 97.8 0.0002 4.4E-09 66.8 11.4 123 180-320 71-196 (262) 196 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.8 8.9E-05 1.9E-09 68.9 8.7 69 253-322 157-238 (256) 197 PF02384 N6_Mtase: N-6 DNA Met 97.8 0.00014 3E-09 69.3 10.2 147 168-316 33-206 (311) 198 PRK04148 hypothetical protein; 97.8 0.00021 4.5E-09 59.9 9.7 97 169-285 4-103 (134) 199 TIGR00095 RNA methyltransferas 97.8 0.0001 2.2E-09 65.5 8.4 107 181-295 49-160 (189) 200 PRK11933 yebU rRNA (cytosine-C 97.8 0.00025 5.4E-09 71.6 11.7 110 178-293 110-241 (470) 201 KOG3191 Predicted N6-DNA-methy 97.7 0.00055 1.2E-08 59.9 12.0 127 182-320 44-190 (209) 202 PF02527 GidB: rRNA small subu 97.7 0.00035 7.7E-09 61.9 10.8 139 169-323 35-175 (184) 203 COG4262 Predicted spermidine s 97.7 0.0002 4.4E-09 68.7 9.6 143 180-324 288-437 (508) 204 PF01170 UPF0020: Putative RNA 97.7 0.00065 1.4E-08 59.9 12.1 144 164-321 11-169 (179) 205 KOG1269 SAM-dependent methyltr 97.7 6E-05 1.3E-09 73.5 5.9 107 177-293 106-214 (364) 206 COG4798 Predicted methyltransf 97.7 0.0004 8.7E-09 61.3 10.0 143 176-328 43-210 (238) 207 COG1092 Predicted SAM-dependen 97.7 0.00028 6.1E-09 69.4 10.0 153 162-321 201-364 (393) 208 COG0500 SmtA SAM-dependent met 97.6 0.00098 2.1E-08 53.5 11.0 102 185-294 52-155 (257) 209 PF01269 Fibrillarin: Fibrilla 97.6 0.0028 6.1E-08 57.4 14.7 144 177-332 69-221 (229) 210 COG0030 KsgA Dimethyladenosine 97.6 0.00064 1.4E-08 63.2 10.9 94 166-270 15-110 (259) 211 COG0357 GidB Predicted S-adeno 97.6 0.00078 1.7E-08 61.0 10.8 140 168-323 53-195 (215) 212 KOG3201 Uncharacterized conser 97.6 8E-05 1.7E-09 63.9 4.0 156 163-326 11-169 (201) 213 KOG1663 O-methyltransferase [S 97.5 0.00062 1.3E-08 61.7 9.1 119 165-293 57-182 (237) 214 PRK11760 putative 23S rRNA C24 97.4 0.0025 5.5E-08 61.4 12.5 118 179-317 209-333 (357) 215 PRK00050 16S rRNA m(4)C1402 me 97.4 0.00042 9.2E-09 65.8 7.1 87 170-261 8-97 (296) 216 TIGR02987 met_A_Alw26 type II 97.4 0.0027 5.8E-08 65.2 13.1 129 181-314 31-216 (524) 217 COG0144 Sun tRNA and rRNA cyto 97.3 0.0051 1.1E-07 60.1 14.2 157 161-321 136-315 (355) 218 KOG1331 Predicted methyltransf 97.3 0.00051 1.1E-08 64.1 6.1 99 179-293 43-142 (293) 219 PF10672 Methyltrans_SAM: S-ad 97.3 0.0012 2.5E-08 62.5 8.6 139 166-315 111-256 (286) 220 PF02475 Met_10: Met-10+ like- 97.3 0.0011 2.4E-08 59.5 8.0 101 178-290 98-198 (200) 221 KOG0820 Ribosomal RNA adenine 97.3 0.0015 3.2E-08 60.7 8.9 89 167-264 44-133 (315) 222 PF01728 FtsJ: FtsJ-like methy 97.2 0.00089 1.9E-08 58.6 7.0 139 170-321 9-161 (181) 223 KOG3987 Uncharacterized conser 97.2 0.00018 4E-09 64.1 2.5 94 182-293 113-206 (288) 224 COG1189 Predicted rRNA methyla 97.2 0.007 1.5E-07 55.3 12.2 141 166-323 63-224 (245) 225 KOG1709 Guanidinoacetate methy 97.2 0.0025 5.4E-08 57.3 8.9 116 169-293 90-205 (271) 226 PF04816 DUF633: Family of unk 97.1 0.0057 1.2E-07 55.1 11.1 124 185-323 1-124 (205) 227 PF05958 tRNA_U5-meth_tr: tRNA 97.0 0.0019 4.2E-08 62.9 7.9 150 165-334 181-345 (352) 228 PF04672 Methyltransf_19: S-ad 97.0 0.0059 1.3E-07 57.0 10.5 108 183-295 70-191 (267) 229 PF10354 DUF2431: Domain of un 96.9 0.01 2.2E-07 51.6 10.5 141 188-334 3-163 (166) 230 COG1889 NOP1 Fibrillarin-like 96.9 0.06 1.3E-06 48.1 14.9 144 177-332 72-223 (231) 231 COG3897 Predicted methyltransf 96.9 0.0036 7.8E-08 55.5 7.2 117 163-293 61-177 (218) 232 COG0293 FtsJ 23S rRNA methylas 96.9 0.014 3E-07 52.5 11.0 137 168-324 32-184 (205) 233 COG5459 Predicted rRNA methyla 96.8 0.0049 1.1E-07 59.2 8.1 121 168-294 100-225 (484) 234 PF03602 Cons_hypoth95: Conser 96.8 0.0012 2.6E-08 58.4 3.8 122 166-296 29-155 (183) 235 PRK11783 rlmL 23S rRNA m(2)G24 96.8 0.015 3.2E-07 61.8 12.4 126 164-293 172-346 (702) 236 PF00398 RrnaAD: Ribosomal RNA 96.7 0.016 3.5E-07 54.0 11.1 105 165-281 14-119 (262) 237 PF13679 Methyltransf_32: Meth 96.6 0.012 2.6E-07 49.6 8.5 96 179-281 23-122 (141) 238 COG2384 Predicted SAM-dependen 96.4 0.058 1.3E-06 48.8 11.9 128 180-322 15-142 (226) 239 PF03141 Methyltransf_29: Puta 96.4 0.0059 1.3E-07 61.2 6.1 121 183-320 367-488 (506) 240 PF13578 Methyltransf_24: Meth 96.4 0.00071 1.5E-08 53.8 -0.6 99 186-293 1-104 (106) 241 TIGR00308 TRM1 tRNA(guanine-26 96.3 0.022 4.7E-07 56.0 9.2 101 182-293 45-146 (374) 242 KOG3420 Predicted RNA methylas 96.3 0.012 2.6E-07 49.8 6.2 91 168-265 35-125 (185) 243 KOG2798 Putative trehalase [Ca 96.2 0.029 6.2E-07 53.3 9.2 70 253-325 258-339 (369) 244 KOG2187 tRNA uracil-5-methyltr 96.2 0.0079 1.7E-07 60.4 5.5 120 165-293 367-489 (534) 245 PF09445 Methyltransf_15: RNA 96.1 0.0052 1.1E-07 53.3 3.4 73 184-261 2-76 (163) 246 COG4627 Uncharacterized protei 96.1 0.00079 1.7E-08 57.4 -1.6 42 251-293 44-85 (185) 247 COG0742 N6-adenine-specific me 96.0 0.1 2.3E-06 46.2 11.3 120 167-295 31-155 (187) 248 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.0 0.041 8.9E-07 52.0 9.4 158 160-322 64-247 (283) 249 PF03059 NAS: Nicotianamine sy 95.9 0.037 8E-07 52.1 8.2 106 182-293 121-229 (276) 250 KOG2793 Putative N2,N2-dimethy 95.9 0.075 1.6E-06 49.2 10.1 108 181-294 86-199 (248) 251 PRK10742 putative methyltransf 95.9 0.024 5.3E-07 52.4 6.8 93 171-268 76-178 (250) 252 COG2520 Predicted methyltransf 95.7 0.12 2.6E-06 50.0 11.3 128 178-317 185-314 (341) 253 KOG3115 Methyltransferase-like 95.4 0.092 2E-06 47.0 8.5 105 181-293 60-182 (249) 254 COG4076 Predicted RNA methylas 95.3 0.032 7E-07 49.3 5.2 100 183-292 34-133 (252) 255 COG0116 Predicted N6-adenine-s 95.3 0.22 4.9E-06 48.7 11.4 127 164-295 174-345 (381) 256 KOG4589 Cell division protein 94.7 0.42 9E-06 42.4 10.3 138 178-336 66-221 (232) 257 PRK01747 mnmC bifunctional tRN 94.6 0.18 3.9E-06 53.2 9.6 61 253-322 165-226 (662) 258 KOG2352 Predicted spermine/spe 94.6 0.17 3.7E-06 50.8 8.8 106 179-292 45-159 (482) 259 PF05971 Methyltransf_10: Prot 94.5 0.24 5.1E-06 47.2 9.1 87 182-270 103-193 (299) 260 PF07091 FmrO: Ribosomal RNA m 94.2 0.17 3.6E-06 46.9 7.3 144 166-322 92-243 (251) 261 PF01861 DUF43: Protein of unk 94.2 1.6 3.4E-05 40.3 13.4 147 171-335 35-186 (243) 262 TIGR01444 fkbM_fam methyltrans 94.2 0.1 2.3E-06 43.3 5.5 41 184-226 1-41 (143) 263 COG0286 HsdM Type I restrictio 94.1 0.93 2E-05 46.3 13.2 143 167-313 172-346 (489) 264 PLN02668 indole-3-acetate carb 94.0 0.46 1E-05 46.8 10.2 42 251-293 159-236 (386) 265 PF06962 rRNA_methylase: Putat 93.9 0.2 4.4E-06 42.3 6.6 111 208-325 2-127 (140) 266 PF04445 SAM_MT: Putative SAM- 93.9 0.077 1.7E-06 48.7 4.4 135 171-324 63-208 (234) 267 PF06859 Bin3: Bicoid-interact 93.9 0.034 7.3E-07 44.9 1.8 66 254-320 1-89 (110) 268 PF07757 AdoMet_MTase: Predict 93.7 0.081 1.8E-06 42.5 3.7 32 180-215 57-88 (112) 269 PF02636 Methyltransf_28: Puta 93.6 0.4 8.6E-06 44.4 8.8 52 168-219 5-64 (252) 270 COG1064 AdhP Zn-dependent alco 93.2 0.44 9.5E-06 46.2 8.5 101 171-293 157-258 (339) 271 KOG1562 Spermidine synthase [A 93.1 0.2 4.4E-06 47.3 5.8 124 168-293 109-235 (337) 272 PF03492 Methyltransf_7: SAM d 93.0 1.2 2.7E-05 43.1 11.4 114 178-293 13-182 (334) 273 TIGR00006 S-adenosyl-methyltra 92.9 0.39 8.5E-06 45.9 7.6 89 169-261 8-99 (305) 274 TIGR00027 mthyl_TIGR00027 meth 92.6 3 6.4E-05 38.9 13.0 132 183-321 83-248 (260) 275 KOG3924 Putative protein methy 92.2 0.62 1.4E-05 45.7 7.9 141 146-293 155-307 (419) 276 KOG1122 tRNA and rRNA cytosine 92.1 0.71 1.5E-05 45.7 8.3 113 177-293 237-370 (460) 277 PF04989 CmcI: Cephalosporin h 91.8 0.36 7.7E-06 43.5 5.5 131 182-318 33-185 (206) 278 KOG2198 tRNA cytosine-5-methyl 91.5 1.6 3.4E-05 42.6 9.9 113 177-293 151-295 (375) 279 COG4301 Uncharacterized conser 91.5 4.5 9.8E-05 37.6 12.3 111 179-293 76-192 (321) 280 KOG2730 Methylase [General fun 91.4 0.14 3E-06 46.5 2.4 98 181-285 94-194 (263) 281 cd08283 FDH_like_1 Glutathione 90.2 2.9 6.3E-05 40.9 10.9 106 176-293 179-305 (386) 282 PRK13699 putative methylase; P 90.0 0.93 2E-05 41.4 6.7 42 273-320 52-93 (227) 283 KOG2918 Carboxymethyl transfer 89.8 3.3 7.1E-05 39.6 10.1 62 157-221 66-127 (335) 284 KOG1501 Arginine N-methyltrans 89.7 0.47 1E-05 47.2 4.6 97 183-285 68-167 (636) 285 PF03269 DUF268: Caenorhabditi 89.2 0.58 1.3E-05 40.5 4.3 71 252-325 61-147 (177) 286 KOG1596 Fibrillarin and relate 89.0 4.7 0.0001 37.3 10.1 141 176-331 151-303 (317) 287 COG3129 Predicted SAM-dependen 88.3 2.5 5.5E-05 38.8 7.9 101 168-269 63-168 (292) 288 PRK09424 pntA NAD(P) transhydr 86.8 6.2 0.00013 40.5 10.7 103 179-293 162-284 (509) 289 KOG2920 Predicted methyltransf 86.1 0.91 2E-05 42.7 4.0 120 163-293 95-233 (282) 290 PF01795 Methyltransf_5: MraW 85.9 1.5 3.2E-05 42.1 5.4 85 173-261 12-100 (310) 291 KOG0024 Sorbitol dehydrogenase 85.6 2.5 5.4E-05 40.6 6.7 102 176-293 164-272 (354) 292 KOG4058 Uncharacterized conser 85.6 2.7 5.8E-05 36.0 6.2 55 168-225 59-113 (199) 293 cd08254 hydroxyacyl_CoA_DH 6-h 85.5 3.2 7E-05 39.0 7.7 99 176-293 160-262 (338) 294 PF05206 TRM13: Methyltransfer 84.2 3 6.4E-05 39.0 6.5 48 168-215 5-57 (259) 295 PRK09880 L-idonate 5-dehydroge 84.1 12 0.00026 35.7 11.0 99 177-293 165-265 (343) 296 PF03514 GRAS: GRAS domain fam 83.8 22 0.00047 35.0 12.7 40 176-215 105-149 (374) 297 COG0275 Predicted S-adenosylme 83.8 5.1 0.00011 38.2 7.9 69 169-241 11-80 (314) 298 PRK11524 putative methyltransf 82.8 4.1 8.9E-05 38.4 7.0 77 237-320 10-100 (284) 299 PF12692 Methyltransf_17: S-ad 82.7 4.4 9.5E-05 34.6 6.2 50 165-215 13-62 (160) 300 COG1565 Uncharacterized conser 82.5 3.5 7.5E-05 40.3 6.3 39 177-215 73-119 (370) 301 PF05430 Methyltransf_30: S-ad 81.4 2 4.3E-05 35.5 3.7 62 253-323 49-111 (124) 302 COG1063 Tdh Threonine dehydrog 81.0 5.7 0.00012 38.6 7.4 103 178-293 165-268 (350) 303 PF02254 TrkA_N: TrkA-N domain 81.0 9.8 0.00021 30.0 7.7 106 190-319 4-113 (116) 304 KOG2539 Mitochondrial/chloropl 78.9 3.6 7.8E-05 41.4 5.2 43 251-294 271-315 (491) 305 cd05188 MDR Medium chain reduc 78.9 9.5 0.00021 34.2 7.8 99 177-294 130-232 (271) 306 TIGR02822 adh_fam_2 zinc-bindi 78.3 21 0.00045 34.0 10.3 92 177-293 161-253 (329) 307 TIGR00497 hsdM type I restrict 77.2 57 0.0012 33.3 13.7 125 167-293 201-354 (501) 308 KOG2651 rRNA adenine N-6-methy 77.2 5.5 0.00012 39.2 5.8 52 169-223 141-192 (476) 309 COG0604 Qor NADPH:quinone redu 75.8 11 0.00024 36.3 7.6 102 172-293 133-240 (326) 310 PF11899 DUF3419: Protein of u 74.8 3.5 7.5E-05 40.7 3.9 59 234-293 275-333 (380) 311 PF11312 DUF3115: Protein of u 74.5 11 0.00025 36.0 7.1 116 182-298 87-246 (315) 312 cd08237 ribitol-5-phosphate_DH 73.6 22 0.00048 34.0 9.2 94 178-293 160-255 (341) 313 PF05711 TylF: Macrocin-O-meth 72.5 30 0.00065 32.1 9.3 126 182-317 75-232 (248) 314 COG3315 O-Methyltransferase in 72.4 78 0.0017 30.1 12.3 132 182-321 93-262 (297) 315 PF01555 N6_N4_Mtase: DNA meth 72.4 7.2 0.00016 34.4 5.1 51 167-220 178-228 (231) 316 cd08230 glucose_DH Glucose deh 72.1 44 0.00096 31.9 10.9 97 179-293 170-268 (355) 317 cd00315 Cyt_C5_DNA_methylase C 72.0 86 0.0019 29.3 13.1 125 184-320 2-140 (275) 318 PF14740 DUF4471: Domain of un 71.7 6.4 0.00014 37.4 4.7 59 252-319 220-285 (289) 319 TIGR02825 B4_12hDH leukotriene 71.0 22 0.00047 33.5 8.3 99 175-293 132-236 (325) 320 PRK03659 glutathione-regulated 69.2 20 0.00044 37.6 8.3 92 184-293 402-497 (601) 321 TIGR03451 mycoS_dep_FDH mycoth 69.0 16 0.00034 35.2 7.0 100 176-293 171-275 (358) 322 PRK15001 SAM-dependent 23S rib 68.2 93 0.002 30.7 12.2 109 167-295 33-143 (378) 323 cd08239 THR_DH_like L-threonin 67.1 18 0.0004 34.2 7.0 100 176-293 158-261 (339) 324 cd08261 Zn_ADH7 Alcohol dehydr 66.9 17 0.00036 34.4 6.6 99 176-293 154-257 (337) 325 cd08232 idonate-5-DH L-idonate 66.5 62 0.0013 30.4 10.5 95 181-293 165-261 (339) 326 KOG1099 SAM-dependent methyltr 66.3 13 0.00027 34.3 5.2 94 183-292 43-161 (294) 327 KOG0822 Protein kinase inhibit 65.3 30 0.00066 35.6 8.1 123 165-293 348-477 (649) 328 cd08281 liver_ADH_like1 Zinc-d 65.0 25 0.00054 34.0 7.6 100 175-293 185-289 (371) 329 PF02005 TRM: N2,N2-dimethylgu 64.6 14 0.00031 36.4 5.7 103 181-293 49-153 (377) 330 cd08236 sugar_DH NAD(P)-depend 63.4 32 0.00068 32.5 7.8 100 176-293 154-257 (343) 331 PHA01634 hypothetical protein 63.1 16 0.00036 30.5 4.8 42 181-225 28-69 (156) 332 TIGR03366 HpnZ_proposed putati 62.8 33 0.00072 31.6 7.7 101 177-293 116-217 (280) 333 TIGR01202 bchC 2-desacetyl-2-h 61.7 47 0.001 31.2 8.6 86 181-293 144-230 (308) 334 cd08294 leukotriene_B4_DH_like 61.3 30 0.00065 32.3 7.2 98 175-293 137-240 (329) 335 PLN03154 putative allyl alcoho 60.8 76 0.0017 30.4 10.0 98 175-293 152-257 (348) 336 cd05278 FDH_like Formaldehyde 59.6 27 0.00059 32.9 6.6 99 177-293 163-266 (347) 337 KOG4174 Uncharacterized conser 59.2 71 0.0015 29.9 8.8 148 177-334 52-228 (282) 338 PF03446 NAD_binding_2: NAD bi 59.2 34 0.00074 29.1 6.6 114 185-323 4-120 (163) 339 PRK03562 glutathione-regulated 58.9 38 0.00083 35.7 8.1 93 183-293 401-497 (621) 340 cd05285 sorbitol_DH Sorbitol d 58.8 40 0.00087 31.9 7.7 101 175-293 156-264 (343) 341 TIGR00561 pntA NAD(P) transhyd 58.3 42 0.00092 34.5 8.0 100 180-291 162-281 (511) 342 TIGR03201 dearomat_had 6-hydro 58.2 34 0.00073 32.7 7.1 46 177-225 162-208 (349) 343 PRK10669 putative cation:proto 57.5 49 0.0011 34.2 8.5 111 183-319 418-532 (558) 344 PRK11524 putative methyltransf 57.4 24 0.00052 33.1 5.7 54 167-223 195-248 (284) 345 COG1867 TRM1 N2,N2-dimethylgua 57.3 60 0.0013 32.0 8.3 101 182-293 53-153 (380) 346 cd08255 2-desacetyl-2-hydroxye 57.2 83 0.0018 28.5 9.3 97 176-293 92-189 (277) 347 cd00401 AdoHcyase S-adenosyl-L 56.3 69 0.0015 32.1 8.9 101 166-293 185-288 (413) 348 PF00107 ADH_zinc_N: Zinc-bind 56.1 5.5 0.00012 32.0 1.0 84 191-293 1-88 (130) 349 PHA03308 transcriptional regul 54.1 12 0.00026 39.5 3.2 54 36-91 1255-1308(1463) 350 cd08231 MDR_TM0436_like Hypoth 54.0 52 0.0011 31.4 7.6 97 179-293 175-279 (361) 351 PF10727 Rossmann-like: Rossma 53.9 23 0.00049 29.3 4.3 90 182-293 10-102 (127) 352 cd08245 CAD Cinnamyl alcohol d 53.5 1.6E+02 0.0035 27.3 10.8 97 177-293 158-255 (330) 353 PLN02740 Alcohol dehydrogenase 53.3 1.2E+02 0.0026 29.4 10.1 100 175-293 192-299 (381) 354 cd08285 NADP_ADH NADP(H)-depen 53.2 53 0.0011 31.2 7.5 100 176-293 161-265 (351) 355 PF06557 DUF1122: Protein of u 52.8 22 0.00048 30.8 4.1 55 268-323 61-123 (170) 356 PF07109 Mg-por_mtran_C: Magne 52.1 50 0.0011 26.1 5.7 59 262-323 3-82 (97) 357 cd08242 MDR_like Medium chain 51.2 1.3E+02 0.0028 28.0 9.7 96 175-293 149-244 (319) 358 PRK13699 putative methylase; P 50.9 41 0.00089 30.6 6.0 52 168-222 151-202 (227) 359 cd08295 double_bond_reductase_ 50.7 68 0.0015 30.3 7.8 102 173-293 143-250 (338) 360 cd08233 butanediol_DH_like (2R 49.9 59 0.0013 30.9 7.3 101 175-293 166-271 (351) 361 COG1568 Predicted methyltransf 48.4 37 0.00081 32.2 5.2 102 181-294 152-260 (354) 362 PRK10309 galactitol-1-phosphat 48.0 50 0.0011 31.4 6.4 99 177-293 156-259 (347) 363 PF09680 Tiny_TM_bacill: Prote 48.0 8.4 0.00018 22.2 0.6 19 25-43 5-23 (24) 364 PF01555 N6_N4_Mtase: DNA meth 47.4 27 0.00059 30.6 4.2 45 273-321 36-81 (231) 365 cd08293 PTGR2 Prostaglandin re 46.6 1.8E+02 0.0039 27.3 10.0 98 177-293 148-253 (345) 366 PRK05225 ketol-acid reductoiso 46.2 48 0.001 33.7 6.0 37 253-295 96-132 (487) 367 TIGR00872 gnd_rel 6-phosphoglu 45.9 1.1E+02 0.0024 28.7 8.4 60 254-322 59-118 (298) 368 PF12242 Eno-Rase_NADH_b: NAD( 45.9 49 0.0011 25.0 4.5 47 167-214 24-71 (78) 369 cd08241 QOR1 Quinone oxidoredu 44.9 87 0.0019 28.5 7.4 98 176-293 134-237 (323) 370 cd08278 benzyl_alcohol_DH Benz 43.6 85 0.0018 30.2 7.3 98 177-293 182-284 (365) 371 cd08234 threonine_DH_like L-th 43.0 1.7E+02 0.0036 27.3 9.1 101 175-293 153-256 (334) 372 KOG0821 Predicted ribosomal RN 42.8 50 0.0011 30.4 5.0 48 168-216 37-84 (326) 373 KOG4022 Dihydropteridine reduc 42.8 45 0.00098 29.2 4.5 35 183-218 4-38 (236) 374 PF06460 NSP13: Coronavirus NS 41.9 1.1E+02 0.0024 28.8 7.2 99 177-293 57-168 (299) 375 PLN02827 Alcohol dehydrogenase 41.7 89 0.0019 30.4 7.1 98 177-293 189-294 (378) 376 COG3510 CmcI Cephalosporin hyd 41.5 74 0.0016 28.6 5.7 127 177-315 66-211 (237) 377 cd01842 SGNH_hydrolase_like_5 41.4 1.3E+02 0.0029 26.6 7.3 42 251-293 47-98 (183) 378 KOG1197 Predicted quinone oxid 40.9 1.4E+02 0.0031 28.1 7.7 103 171-293 136-244 (336) 379 COG0686 Ald Alanine dehydrogen 40.8 83 0.0018 30.5 6.3 96 183-291 169-265 (371) 380 cd08279 Zn_ADH_class_III Class 40.7 98 0.0021 29.6 7.2 100 176-293 177-281 (363) 381 cd08277 liver_alcohol_DH_like 40.3 1.3E+02 0.0027 29.0 7.9 102 175-293 178-285 (365) 382 KOG1098 Putative SAM-dependent 40.1 37 0.0008 35.7 4.1 40 177-217 40-79 (780) 383 PRK10537 voltage-gated potassi 38.7 1.4E+02 0.0029 29.7 7.9 92 183-294 241-336 (393) 384 TIGR02819 fdhA_non_GSH formald 38.7 1.1E+02 0.0023 30.1 7.2 107 177-293 181-298 (393) 385 cd05286 QOR2 Quinone oxidoredu 38.5 1.2E+02 0.0025 27.6 7.1 99 175-293 130-234 (320) 386 PRK09496 trkA potassium transp 37.3 1.6E+02 0.0035 29.1 8.4 33 182-216 231-265 (453) 387 cd08300 alcohol_DH_class_III c 36.8 3E+02 0.0065 26.4 10.0 100 175-293 180-287 (368) 388 PF11599 AviRa: RRNA methyltra 36.6 80 0.0017 28.9 5.3 56 166-221 36-93 (246) 389 cd08286 FDH_like_ADH2 formalde 36.5 1.2E+02 0.0025 28.6 7.0 99 177-293 162-265 (345) 390 cd05281 TDH Threonine dehydrog 36.4 1.4E+02 0.003 28.2 7.4 98 178-293 160-261 (341) 391 COG0287 TyrA Prephenate dehydr 36.2 1.1E+02 0.0024 28.8 6.6 90 183-292 4-95 (279) 392 KOG1253 tRNA methyltransferase 36.1 33 0.00071 35.0 3.0 106 179-293 107-215 (525) 393 KOG2352 Predicted spermine/spe 35.7 71 0.0015 32.5 5.3 110 180-293 294-415 (482) 394 cd08265 Zn_ADH3 Alcohol dehydr 35.6 1.1E+02 0.0023 29.8 6.6 34 252-293 273-306 (384) 395 PRK06274 indolepyruvate oxidor 35.6 1E+02 0.0022 27.0 5.9 32 252-294 65-96 (197) 396 PF02558 ApbA: Ketopantoate re 35.1 53 0.0011 27.1 3.9 37 252-294 65-101 (151) 397 PRK13403 ketol-acid reductoiso 34.2 1E+02 0.0022 30.0 5.9 91 181-294 15-106 (335) 398 PF15013 CCSMST1: CCSMST1 fami 33.1 30 0.00065 26.1 1.7 17 19-35 33-49 (77) 399 cd08266 Zn_ADH_like1 Alcohol d 33.0 1.5E+02 0.0033 27.2 7.1 98 176-293 161-264 (342) 400 PRK05396 tdh L-threonine 3-deh 32.9 1.4E+02 0.0029 28.2 6.8 96 180-293 162-262 (341) 401 PLN02256 arogenate dehydrogena 32.4 2.1E+02 0.0046 27.2 7.9 43 173-217 27-69 (304) 402 PRK05786 fabG 3-ketoacyl-(acyl 32.2 2.1E+02 0.0046 25.0 7.6 35 182-217 5-39 (238) 403 TIGR00518 alaDH alanine dehydr 32.2 1.1E+02 0.0024 30.0 6.0 35 181-216 166-201 (370) 404 KOG0023 Alcohol dehydrogenase, 31.7 1.2E+02 0.0025 29.6 5.8 47 167-217 168-215 (360) 405 cd08243 quinone_oxidoreductase 31.6 1.8E+02 0.0038 26.6 7.2 94 177-293 138-237 (320) 406 PF00145 DNA_methylase: C-5 cy 31.4 2.2E+02 0.0048 26.3 7.9 121 184-320 2-139 (335) 407 PF08693 SKG6: Transmembrane a 31.3 56 0.0012 21.5 2.5 17 11-27 13-29 (40) 408 PRK07417 arogenate dehydrogena 31.0 1.7E+02 0.0037 27.1 7.0 32 253-290 56-87 (279) 409 cd08263 Zn_ADH10 Alcohol dehyd 30.6 1.5E+02 0.0032 28.4 6.7 99 177-293 183-286 (367) 410 cd08298 CAD2 Cinnamyl alcohol 30.6 3.8E+02 0.0082 24.8 9.4 95 175-293 161-255 (329) 411 PF04072 LCM: Leucine carboxyl 30.5 85 0.0018 27.2 4.5 94 181-279 77-182 (183) 412 COG1062 AdhC Zn-dependent alco 30.5 1.6E+02 0.0034 28.9 6.5 105 174-293 178-284 (366) 413 PF07101 DUF1363: Protein of u 30.4 19 0.00042 28.3 0.3 17 185-201 6-22 (124) 414 TIGR01692 HIBADH 3-hydroxyisob 30.3 2E+02 0.0044 26.7 7.3 58 254-320 52-113 (288) 415 PF15018 InaF-motif: TRP-inter 29.9 29 0.00063 22.5 1.0 19 14-32 7-25 (38) 416 cd05279 Zn_ADH1 Liver alcohol 29.4 2.1E+02 0.0046 27.4 7.5 100 175-293 177-284 (365) 417 PRK12490 6-phosphogluconate de 29.3 2.6E+02 0.0055 26.3 7.9 57 255-320 60-117 (299) 418 TIGR00675 dcm DNA-methyltransf 29.1 4.5E+02 0.0097 25.0 9.6 33 185-218 1-33 (315) 419 PF11899 DUF3419: Protein of u 28.6 1.4E+02 0.003 29.6 6.0 42 176-219 30-71 (380) 420 KOG2811 Uncharacterized conser 28.4 1.4E+02 0.0029 29.6 5.7 42 169-210 169-211 (420) 421 PF04530 Viral_Beta_CD: Viral 27.8 1.3E+02 0.0028 24.8 4.6 16 80-95 96-111 (122) 422 PF10237 N6-adenineMlase: Prob 27.5 4E+02 0.0087 22.9 11.3 110 167-294 13-123 (162) 423 PLN02494 adenosylhomocysteinas 26.8 2E+02 0.0044 29.4 6.9 100 167-293 238-340 (477) 424 KOG2015 NEDD8-activating compl 26.8 1.8E+02 0.0038 28.4 6.1 41 166-215 31-74 (422) 425 PTZ00142 6-phosphogluconate de 26.7 2.7E+02 0.0058 28.4 7.9 60 254-321 66-125 (470) 426 PRK05476 S-adenosyl-L-homocyst 26.4 3.6E+02 0.0079 27.1 8.6 99 167-293 196-298 (425) 427 cd08274 MDR9 Medium chain dehy 26.2 2E+02 0.0043 26.9 6.6 96 176-292 172-271 (350) 428 TIGR00692 tdh L-threonine 3-de 26.1 1.9E+02 0.004 27.3 6.4 98 178-293 158-260 (340) 429 PLN02586 probable cinnamyl alc 25.8 3E+02 0.0066 26.4 7.9 96 178-293 180-277 (360) 430 KOG2912 Predicted DNA methylas 25.4 2.3E+02 0.005 27.6 6.6 78 185-264 106-188 (419) 431 cd08292 ETR_like_2 2-enoyl thi 25.4 2.3E+02 0.0049 26.1 6.8 97 177-293 135-237 (324) 432 TIGR03042 PS_II_psbQ_bact phot 25.4 88 0.0019 26.5 3.4 13 84-96 30-42 (142) 433 cd05282 ETR_like 2-enoyl thioe 25.0 2.4E+02 0.0052 25.9 6.9 97 177-293 134-236 (323) 434 KOG1209 1-Acyl dihydroxyaceton 24.9 92 0.002 28.6 3.6 34 182-215 7-40 (289) 435 PRK08655 prephenate dehydrogen 24.7 2.6E+02 0.0057 28.0 7.4 31 254-290 58-88 (437) 436 cd08240 6_hydroxyhexanoate_dh_ 24.1 2.9E+02 0.0063 26.0 7.4 97 178-293 172-273 (350) 437 PF04478 Mid2: Mid2 like cell 23.8 36 0.00079 29.1 0.9 11 12-22 53-63 (154) 438 COG2933 Predicted SAM-dependen 23.8 2.2E+02 0.0048 27.0 6.0 118 178-318 208-334 (358) 439 cd05289 MDR_like_2 alcohol deh 23.4 5.4E+02 0.012 23.0 11.2 95 178-293 141-237 (309) 440 PLN02702 L-idonate 5-dehydroge 23.3 5.3E+02 0.012 24.4 9.1 102 176-293 176-284 (364) 441 PRK06522 2-dehydropantoate 2-r 23.3 4.6E+02 0.0099 24.1 8.4 34 253-292 65-98 (304) 442 PRK07574 formate dehydrogenase 23.2 3.9E+02 0.0085 26.4 8.1 113 181-317 191-304 (385) 443 PF01210 NAD_Gly3P_dh_N: NAD-d 23.0 1.9E+02 0.0042 24.3 5.3 33 254-293 69-101 (157) 444 cd08268 MDR2 Medium chain dehy 23.0 3.3E+02 0.0071 24.7 7.3 31 253-293 212-242 (328) 445 PRK06701 short chain dehydroge 22.8 6E+02 0.013 23.4 9.2 31 181-212 45-75 (290) 446 PRK07533 enoyl-(acyl carrier p 22.7 4.1E+02 0.009 23.8 7.8 34 181-214 9-45 (258) 447 KOG2671 Putative RNA methylase 22.7 1.2E+02 0.0026 29.8 4.2 39 177-219 204-242 (421) 448 PRK08229 2-dehydropantoate 2-r 22.4 3.5E+02 0.0076 25.6 7.5 33 253-291 72-104 (341) 449 COG0270 Dcm Site-specific DNA 22.4 6.8E+02 0.015 23.8 10.5 125 182-317 3-141 (328) 450 PTZ00357 methyltransferase; Pr 22.4 2.9E+02 0.0063 29.9 7.1 34 183-216 702-737 (1072) 451 cd08267 MDR1 Medium chain dehy 22.2 5.9E+02 0.013 23.0 10.5 28 177-204 139-168 (319) 452 PF06897 DUF1269: Protein of u 22.1 3.3E+02 0.0071 21.6 6.0 44 275-323 44-87 (102) 453 cd08235 iditol_2_DH_like L-idi 22.1 2.6E+02 0.0056 26.1 6.5 98 177-293 161-264 (343) 454 cd08258 Zn_ADH4 Alcohol dehydr 22.1 4.8E+02 0.01 24.1 8.3 32 253-293 232-263 (306) 455 cd08269 Zn_ADH9 Alcohol dehydr 22.1 2.9E+02 0.0062 25.2 6.7 100 176-293 124-228 (312) 456 PF08290 Hep_core_N: Hepatitis 21.6 22 0.00048 21.0 -0.6 15 35-49 6-20 (27) 457 PRK08306 dipicolinate synthase 21.6 2.8E+02 0.0061 26.2 6.6 86 181-291 151-238 (296) 458 cd08297 CAD3 Cinnamyl alcohol 21.5 2.7E+02 0.0059 26.0 6.5 98 177-293 161-264 (341) 459 cd08291 ETR_like_1 2-enoyl thi 21.5 1.9E+02 0.0041 27.0 5.5 31 253-293 211-241 (324) 460 KOG3917 Beta-1,4-galactosyltra 21.2 1E+02 0.0023 28.3 3.2 25 24-48 19-43 (310) 461 PRK07984 enoyl-(acyl carrier p 21.0 5.9E+02 0.013 23.1 8.5 32 181-212 5-37 (262) 462 PF02826 2-Hacid_dh_C: D-isome 20.8 4.1E+02 0.0089 22.7 7.0 123 181-331 35-161 (178) 463 cd05284 arabinose_DH_like D-ar 20.8 2E+02 0.0043 26.9 5.4 32 253-293 234-265 (340) 464 PLN02896 cinnamyl-alcohol dehy 20.6 5.9E+02 0.013 24.1 8.7 34 180-214 8-41 (353) 465 PRK09590 celB cellobiose phosp 20.6 4.3E+02 0.0094 20.9 8.3 52 253-313 49-102 (104) 466 PRK06128 oxidoreductase; Provi 20.6 6.7E+02 0.015 23.1 9.4 29 182-211 55-83 (300) 467 PRK07502 cyclohexadienyl dehyd 20.6 4E+02 0.0086 25.0 7.4 32 254-291 66-97 (307) 468 cd08244 MDR_enoyl_red Possible 20.3 3.6E+02 0.0077 24.7 7.0 98 176-293 137-240 (324) 469 PF05050 Methyltransf_21: Meth 20.3 1.9E+02 0.0041 23.6 4.7 36 187-222 1-38 (167) 470 cd08246 crotonyl_coA_red croto 20.2 2.9E+02 0.0062 26.7 6.5 46 177-225 189-236 (393) 471 cd08296 CAD_like Cinnamyl alco 20.0 4.6E+02 0.01 24.5 7.8 98 177-293 159-258 (333) No 1 >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction:S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D .... Probab=99.82 E-value=9.8e-20 Score=170.55 Aligned_cols=150 Identities=20% Similarity=0.266 Sum_probs=107.4 Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343) .+.++++.+++++++++|.+|||||||+|.++..+++.+ ++++++++.|..+.+++++... .|+. +++.+... T Consensus 46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~---g~~v~gitlS~~Q~~~a~~~~~~~gl~-~~v~v~~~-- 119 (273) T PF02353_consen 46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY---GCHVTGITLSEEQAEYARERIREAGLE-DRVEVRLQ-- 119 (273) T ss_dssp HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSS-STEEEEES-- T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc---CcEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEe-- Confidence 477899999999999999999999999999999999975 4568888888888888766544 4543 35555543 Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe--------------ccccccCC------- Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH--------------NIKFCSRL------- 302 (343) Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~--------------~~~~~~~~------- 302 (343) |+.+++ .+||.|+++.+++|++......+|+++.++||| ||++++.. ..+++..+ T Consensus 120 -D~~~~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp-gG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~l 195 (273) T PF02353_consen 120 -DYRDLP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKP-GGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYL 195 (273) T ss_dssp --GGG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSET-TEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS-- T ss_pred -eccccC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCC-CcEEEEEecccccccchhhcCCCceEEEEeeCCCCCC Confidence 555443 499999999999999988888899999999999 99998751 01222222 Q ss_pred -CHHHHHHHHHhcCCcEEEeeec Q 019282 303 -GGEECTKRLTSLGLEYIGKKTH 324 (343) Q Consensus 303 -~~~~l~~~L~~aGf~~v~~~~~ 324 (343) ..+++...+++.||++...... T Consensus 196 ps~~~~~~~~~~~~l~v~~~~~~ 218 (273) T PF02353_consen 196 PSLSEILRAAEDAGLEVEDVENL 218 (273) T ss_dssp -BHHHHHHHHHHTT-EEEEEEE- T ss_pred CCHHHHHHHHhcCCEEEEEEEEc Confidence 1677888889999998876654 No 2 >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] Probab=99.80 E-value=4.5e-19 Score=164.80 Aligned_cols=167 Identities=16% Similarity=0.235 Sum_probs=123.6 Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc-cCCCCCCCcEEEeccc Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP-SQGLLHKRPIIVRGED 243 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~-~~~~~~~~~~~~~~~~ 243 (343) .+..+++.+++.++++||++|||||||||.+++++++.+ +++|+|++.|..+.+.+++.. +.|+.. ++.+.. T Consensus 56 AQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y---~v~V~GvTlS~~Q~~~~~~r~~~~gl~~-~v~v~l--- 128 (283) T COG2230 56 AQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY---GVTVVGVTLSEEQLAYAEKRIAARGLED-NVEVRL--- 128 (283) T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc---CCEEEEeeCCHHHHHHHHHHHHHcCCCc-ccEEEe--- Confidence 367889999999999999999999999999999999975 456777777778877776643 355542 444433 Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe---c-------cccccCC--------CHH Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH---N-------IKFCSRL--------GGE 305 (343) Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~---~-------~~~~~~~--------~~~ 305 (343) .|..++ .++||.|+++.+|+|++....+.+|++++++|+| ||++++.. . .+|+..| +.. T Consensus 129 ~d~rd~--~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~-~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~ 205 (283) T COG2230 129 QDYRDF--EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKP-GGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSIS 205 (283) T ss_pred cccccc--ccccceeeehhhHHHhCcccHHHHHHHHHhhcCC-CceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHH Confidence 355544 3569999999999999998889999999999999 99998752 1 1122222 157 Q ss_pred HHHHHHHhcCCcEEEeeecc---ccccchhHHhhhhhcc Q 019282 306 ECTKRLTSLGLEYIGKKTHD---SLLFNHYEIWFEFRRS 341 (343) Q Consensus 306 ~l~~~L~~aGf~~v~~~~~~---~l~~~~~e~w~~~~~~ 341 (343) ++.+..+++||.+...+... .....+|-.+|+..+. T Consensus 206 ~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~~~~ 244 (283) T COG2230 206 EILELASEAGFVVLDVESLRPHYARTLRLWRERFEANRD 244 (283) T ss_pred HHHHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHHHHHH Confidence 88888999999988766433 2334555566655443 No 3 >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Probab=99.72 E-value=8.1e-17 Score=147.10 Aligned_cols=141 Identities=20% Similarity=0.257 Sum_probs=104.9 Q ss_pred HHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCC Q 019282 172 FLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGS 251 (343) Q Consensus 172 ~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 251 (343) .+.+.+..++|.+|||||||||.++..+++..+...++++| .+..|.+.++++....... .+.++.+++++++ + + T Consensus 42 ~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D--~s~~ML~~a~~k~~~~~~~-~i~fv~~dAe~LP-f-~ 116 (238) T COG2226 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLD--ISESMLEVAREKLKKKGVQ-NVEFVVGDAENLP-F-P 116 (238) T ss_pred HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEE--CCHHHHHHHHHHhhccCcc-ceEEEEechhhCC-C-C Confidence 34444566689999999999999999999988755444554 5555555555543322222 2788889888888 6 5 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc--------------------c------------- Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK--------------------F------------- 298 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~--------------------~------------- 298 (343) +++||+|++.+.++++++.+. +|++++|+||| ||++++..... . T Consensus 117 D~sFD~vt~~fglrnv~d~~~--aL~E~~RVlKp-gG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~ 193 (238) T COG2226 117 DNSFDAVTISFGLRNVTDIDK--ALKEMYRVLKP-GGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYE 193 (238) T ss_pred CCccCEEEeeehhhcCCCHHH--HHHHHHHhhcC-CeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHH Confidence 889999999999999998877 99999999999 99998762000 0 Q ss_pred -----c-cCCCHHHHHHHHHhcCCcEEE Q 019282 299 -----C-SRLGGEECTKRLTSLGLEYIG 320 (343) Q Consensus 299 -----~-~~~~~~~l~~~L~~aGf~~v~ 320 (343) . .....+++.+.++++||+.+. T Consensus 194 yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238) T COG2226 194 YLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238) T ss_pred HHHHHHHhCCCHHHHHHHHHhcCceEEe Confidence 0 112288899999999999877 No 4 >PLN02244 tocopherol O-methyltransferase Probab=99.71 E-value=2e-16 Score=152.98 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=110.4 Q ss_pred chHHHHHHHHHhcCC-----CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEE Q 019282 165 GGRDVFEFLAEASHI-----TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIV 239 (343) Q Consensus 165 ~~~~~~~~l~~~~~l-----~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~ 239 (343) .+.++++.+.+...+ .++.+|||||||+|.++..+++.+ +..++++|.++.+.+.++++........++.++ T Consensus 97 aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~---g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~ 173 (340) T PLN02244 97 AQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY---GANVKGITLSPVQAARANALAAAQGLSDKVSFQ 173 (340) T ss_pred HHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEE Confidence 345566667766666 678899999999999999999865 234566666666666655543322222356677 Q ss_pred ecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc---------------------- Q 019282 240 RGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK---------------------- 297 (343) Q Consensus 240 ~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~---------------------- 297 (343) .++..+++ + .+++||+|++..+++|+++... ++++++++||| ||++++..... T Consensus 174 ~~D~~~~~-~-~~~~FD~V~s~~~~~h~~d~~~--~l~e~~rvLkp-GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~ 248 (340) T PLN02244 174 VADALNQP-F-EDGQFDLVWSMESGEHMPDKRK--FVQELARVAAP-GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKIC 248 (340) T ss_pred EcCcccCC-C-CCCCccEEEECCchhccCCHHH--HHHHHHHHcCC-CcEEEEEEecccccccccccCCHHHHHHHHHHH Confidence 66544443 3 3679999999999999998765 99999999999 99998863100 Q ss_pred --c-ccC-CCHHHHHHHHHhcCCcEEEeeecccc Q 019282 298 --F-CSR-LGGEECTKRLTSLGLEYIGKKTHDSL 327 (343) Q Consensus 298 --~-~~~-~~~~~l~~~L~~aGf~~v~~~~~~~l 327 (343) + ... ...+++.++++++||+++........ T Consensus 249 ~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~ 282 (340) T PLN02244 249 AAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEH 282 (340) T ss_pred hhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHH Confidence 0 000 13789999999999999987755433 No 5 >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Probab=99.71 E-value=4e-16 Score=145.67 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=109.3 Q ss_pred CCc-cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEE Q 019282 161 EPW-AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIV 239 (343) Q Consensus 161 ~~~-~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~ 239 (343) +++ ..+.+-...++..+.++++.+|||||||+|..+..++... +..++++|.++.+.+.++++... ..++.+. T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~ 104 (263) T PTZ00098 31 DYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY---GAHVHGVDICEKMVNIAKLRNSD---KNKIEFE 104 (263) T ss_pred CCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc---CCEEEEEECCHHHHHHHHHHcCc---CCceEEE Confidence 444 3445556667777889999999999999999999888753 23455566666666655543321 2245555 Q ss_pred ecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc-----cc------------ccCC Q 019282 240 RGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI-----KF------------CSRL 302 (343) Q Consensus 240 ~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~-----~~------------~~~~ 302 (343) .++..+.+ + ++++||+|++..+++|++......+|++++++||| ||+++++... .. .... T Consensus 105 ~~D~~~~~-~-~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkP-GG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (263) T PTZ00098 105 ANDILKKD-F-PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKP-NGILLITDYCADKIENWDEEFKAYIKKRKYTLI 181 (263) T ss_pred ECCcccCC-C-CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCC-CcEEEEEEeccccccCcHHHHHHHHHhcCCCCC Confidence 55333222 2 35789999999999999855566799999999999 9999987421 00 1112 Q ss_pred CHHHHHHHHHhcCCcEEEeeeccc Q 019282 303 GGEECTKRLTSLGLEYIGKKTHDS 326 (343) Q Consensus 303 ~~~~l~~~L~~aGf~~v~~~~~~~ 326 (343) +.+++.++|+++||+++....... T Consensus 182 ~~~~~~~~l~~aGF~~v~~~d~~~ 205 (263) T PTZ00098 182 PIQEYGDLIKSCNFQNVVAKDISD 205 (263) T ss_pred CHHHHHHHHHHCCCCeeeEEeCcH Confidence 378999999999999988765433 No 6 >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. Probab=99.67 E-value=1.6e-16 Score=145.64 Aligned_cols=140 Identities=22% Similarity=0.345 Sum_probs=73.3 Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCce Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343) Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343) .....++.+|||+|||||.++..+++..++ ...++++|.++.|.+.++++....... ++.++.+++++++ + ++++| T Consensus 42 ~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~-~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp-~-~d~sf 117 (233) T PF01209_consen 42 LLGLRPGDRVLDVACGTGDVTRELARRVGP-NGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLP-F-PDNSF 117 (233) T ss_dssp HHT--S--EEEEET-TTSHHHHHHGGGSS----EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S--TT-E T ss_pred ccCCCCCCEEEEeCCChHHHHHHHHHHCCC-ccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhc-C-CCCce Confidence 346778899999999999999999886643 224555555556666555443322122 6788888777776 4 46899 Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec---------------------------------ccc---- Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN---------------------------------IKF---- 298 (343) Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~---------------------------------~~~---- 298 (343) |+|++.+.++++++... .|++++|+||| ||+++|... ..+ T Consensus 118 D~v~~~fglrn~~d~~~--~l~E~~RVLkP-GG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~S 194 (233) T PF01209_consen 118 DAVTCSFGLRNFPDRER--ALREMYRVLKP-GGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPES 194 (233) T ss_dssp EEEEEES-GGG-SSHHH--HHHHHHHHEEE-EEEEEEEEEEB-SSHHHHHHHHH-------------------------- T ss_pred eEEEHHhhHHhhCCHHH--HHHHHHHHcCC-CeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccc Confidence 99999999999998766 99999999999 999987610 000 Q ss_pred ccCC-CHHHHHHHHHhcCCcEEEee Q 019282 299 CSRL-GGEECTKRLTSLGLEYIGKK 322 (343) Q Consensus 299 ~~~~-~~~~l~~~L~~aGf~~v~~~ 322 (343) +..+ ..+++.++|+++||+.++.+ T Consensus 195 i~~f~~~~~~~~~l~~~Gf~~v~~~ 219 (233) T PF01209_consen 195 IRRFPSPEELKELLEEAGFKNVEYR 219 (233) T ss_dssp ------------------------- T ss_pred ccccccccccccccccccccccccc Confidence 1111 28899999999999977644 No 7 >PLN02233 ubiquinone biosynthesis methyltransferase Probab=99.66 E-value=5.7e-15 Score=137.76 Aligned_cols=142 Identities=19% Similarity=0.210 Sum_probs=99.1 Q ss_pred HhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc--CCCCCCCcEEEecccCCcCCCCC Q 019282 175 EASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS--QGLLHKRPIIVRGEDMDFTKFGS 251 (343) Q Consensus 175 ~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~--~~~~~~~~~~~~~~~~dl~~~~~ 251 (343) +...++++.+|||||||||.++..+++..+. .. ++++|.++.|.+.++++.. ......++.++.++..+++ + . T Consensus 67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~--V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~-~ 142 (261) T PLN02233 67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGK--VMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-F-D 142 (261) T ss_pred HHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCE--EEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-C-C Confidence 3456778899999999999999988876532 34 4445555555555443221 1111225666766555544 3 3 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc----c----------------------------- Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK----F----------------------------- 298 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~----~----------------------------- 298 (343) +++||+|++..++||++++.. ++++++|+||| ||++++..... + T Consensus 143 ~~sfD~V~~~~~l~~~~d~~~--~l~ei~rvLkp-GG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l 219 (261) T PLN02233 143 DCYFDAITMGYGLRNVVDRLK--AMQEMYRVLKP-GSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYL 219 (261) T ss_pred CCCEeEEEEecccccCCCHHH--HHHHHHHHcCc-CcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHH Confidence 678999999999999998766 99999999999 99998863110 0 Q ss_pred ----ccCCCHHHHHHHHHhcCCcEEEeee Q 019282 299 ----CSRLGGEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 299 ----~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343) ...+.++++.++|+++||+.+.... T Consensus 220 ~~s~~~f~s~~el~~ll~~aGF~~~~~~~ 248 (261) T PLN02233 220 KSSINEYLTGEELEKLALEAGFSSAKHYE 248 (261) T ss_pred HHHHHhcCCHHHHHHHHHHCCCCEEEEEE Confidence 0123488999999999999886543 No 8 >PLN02396 hexaprenyldihydroxybenzoate methyltransferase Probab=99.65 E-value=1.4e-15 Score=145.48 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=100.6 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343) .++.+|||||||+|.++..+++ .+..++++|.+..+.+.+++.........++.++.++..++. . .+++||+|+ T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~----~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~-~~~~FD~Vi 203 (322) T PLN02396 130 FEGLKFIDIGCGGGLLSEPLAR----MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-D-EGRKFDAVL 203 (322) T ss_pred CCCCEEEEeeCCCCHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-h-ccCCCCEEE Confidence 4567999999999999998887 345677777777777777654332222225566665444443 2 357899999 Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------------cccCCCHHHHHHHHHhc Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------------FCSRLGGEECTKRLTSL 314 (343) Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------------~~~~~~~~~l~~~L~~a 314 (343) +..+++|++++.. +++++.++||| ||.++++.... +...++++++.+.|+++ T Consensus 204 ~~~vLeHv~d~~~--~L~~l~r~LkP-GG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~a 280 (322) T PLN02396 204 SLEVIEHVANPAE--FCKSLSALTIP-NGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRA 280 (322) T ss_pred EhhHHHhcCCHHH--HHHHHHHHcCC-CcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHc Confidence 9999999999876 99999999999 99999873110 11234599999999999 Q ss_pred CCcEEEeeec Q 019282 315 GLEYIGKKTH 324 (343) Q Consensus 315 Gf~~v~~~~~ 324 (343) ||+++..... T Consensus 281 Gf~i~~~~G~ 290 (322) T PLN02396 281 SVDVKEMAGF 290 (322) T ss_pred CCeEEEEeee Confidence 9999877543 No 9 >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Probab=99.64 E-value=3.1e-15 Score=138.92 Aligned_cols=141 Identities=20% Similarity=0.189 Sum_probs=99.1 Q ss_pred HHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCC Q 019282 172 FLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFG 250 (343) Q Consensus 172 ~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~ 250 (343) .+.+.+. .++.+|||||||+|.++..+++. +..++++|.++.+.+.+++... .+. ..++.++.++..++... T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~----g~~v~~vD~s~~~l~~a~~~~~~~g~-~~~v~~~~~d~~~l~~~- 108 (255) T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQTAIKLAEL----GHQVILCDLSAEMIQRAKQAAEAKGV-SDNMQFIHCAAQDIAQH- 108 (255) T ss_pred HHHHhcC-CCCCEEEEeCCCchHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhcCC-ccceEEEEcCHHHHhhh- Confidence 3444444 45679999999999999999883 3456666666666666655433 232 23556666644444323 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------------c----ccC Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------------F----CSR 301 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------------~----~~~ 301 (343) .+++||+|++..+++|+.++.. +++++.++||| ||.+++.+... + ... T Consensus 109 ~~~~fD~V~~~~vl~~~~~~~~--~l~~~~~~Lkp-gG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 185 (255) T PRK11036 109 LETPVDLILFHAVLEWVADPKS--VLQTLWSVLRP-GGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYP 185 (255) T ss_pred cCCCCCEEEehhHHHhhCCHHH--HHHHHHHHcCC-CeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCC Confidence 3578999999999999988765 99999999999 99998752110 0 011 Q ss_pred CCHHHHHHHHHhcCCcEEEee Q 019282 302 LGGEECTKRLTSLGLEYIGKK 322 (343) Q Consensus 302 ~~~~~l~~~L~~aGf~~v~~~ 322 (343) +.++++.++|+++||+++... T Consensus 186 ~~~~~l~~~l~~aGf~~~~~~ 206 (255) T PRK11036 186 LDPEQVYQWLEEAGWQIMGKT 206 (255) T ss_pred CCHHHHHHHHHHCCCeEeeee Confidence 338999999999999988544 No 10 >TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria. Probab=99.63 E-value=7.6e-15 Score=139.98 Aligned_cols=160 Identities=13% Similarity=0.087 Sum_probs=105.6 Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343) Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343) +...+...+...++.+|||||||+|.++..++.... ..++++|++..+...++..........++.+... ++.+ T Consensus 109 ~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~---~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~---~ie~ 182 (314) T TIGR00452 109 KWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA---KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL---GIEQ 182 (314) T ss_pred HHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC---CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC---CHHH Confidence 445566556667788999999999999988876422 2477888877776543221110001123444433 3333 Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec----cc---------c------ccCCCHHHHHH Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN----IK---------F------CSRLGGEECTK 309 (343) Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~----~~---------~------~~~~~~~~l~~ 309 (343) ++....||+|++..+++|++++.. +|++++++||| ||.|++... .. + .......++.. T Consensus 183 lp~~~~FD~V~s~gvL~H~~dp~~--~L~el~r~Lkp-GG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~ 259 (314) T TIGR00452 183 LHELYAFDTVFSMGVLYHRKSPLE--HLKQLKHQLVI-KGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKN 259 (314) T ss_pred CCCCCCcCEEEEcchhhccCCHHH--HHHHHHHhcCC-CCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHH Confidence 333458999999999999988866 99999999999 999998621 00 0 01123788999 Q ss_pred HHHhcCCcEEEeeecccc--ccchhHHhhh Q 019282 310 RLTSLGLEYIGKKTHDSL--LFNHYEIWFE 337 (343) Q Consensus 310 ~L~~aGf~~v~~~~~~~l--~~~~~e~w~~ 337 (343) +|+++||+.++....... -......|+. T Consensus 260 ~L~~aGF~~V~i~~~~~tt~~eqr~t~w~~ 289 (314) T TIGR00452 260 WLEKVGFENFRILDVLKTTPEEQRKTDWIL 289 (314) T ss_pred HHHHCCCeEEEEEeccCCCHHHhhhhhhhh Confidence 999999999976543222 2344557765 No 11 >PRK14103 trans-aconitate 2-methyltransferase; Provisional Probab=99.63 E-value=1.2e-14 Score=134.94 Aligned_cols=136 Identities=18% Similarity=0.106 Sum_probs=96.8 Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG 250 (343) Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~ 250 (343) ..+.+.+...++.+|||||||+|.++..+++..+... ++++|.++.+.+.+++. .+.++.++..+ +. T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~--v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~---~~ 85 (255) T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAV--IEALDSSPEMVAAARER--------GVDARTGDVRD---WK 85 (255) T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCE--EEEEECCHHHHHHHHhc--------CCcEEEcChhh---CC Confidence 4455556777889999999999999999998765444 55555555666655431 23345443333 33 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc-----------------ccc------------cC Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI-----------------KFC------------SR 301 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~-----------------~~~------------~~ 301 (343) .+++||+|+++.++||+++... ++++++++||| ||.+++.... .+. .. T Consensus 86 ~~~~fD~v~~~~~l~~~~d~~~--~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 162 (255) T PRK14103 86 PKPDTDVVVSNAALQWVPEHAD--LLVRWVDELAP-GSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVV 162 (255) T ss_pred CCCCceEEEEehhhhhCCCHHH--HHHHHHHhCCC-CcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCC Confidence 4578999999999999988755 99999999999 9999885210 010 01 Q ss_pred CCHHHHHHHHHhcCCcEEEee Q 019282 302 LGGEECTKRLTSLGLEYIGKK 322 (343) Q Consensus 302 ~~~~~l~~~L~~aGf~~v~~~ 322 (343) ..++++.++|+++||++.... T Consensus 163 ~~~~~~~~~l~~aGf~v~~~~ 183 (255) T PRK14103 163 QTPAGYAELLTDAGCKVDAWE 183 (255) T ss_pred CCHHHHHHHHHhCCCeEEEEe Confidence 238999999999999855433 No 12 >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C .... Probab=99.63 E-value=2.4e-15 Score=128.46 Aligned_cols=131 Identities=23% Similarity=0.300 Sum_probs=91.8 Q ss_pred HHHHHHhcC-CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC Q 019282 170 FEFLAEASH-ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343) Q Consensus 170 ~~~l~~~~~-l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343) .+.+..... .+++.+|||||||+|.++..+++. +..++++|++..+... . ..........+. T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~g~D~~~~~~~~--~---------~~~~~~~~~~~~-- 72 (161) T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR----GFEVTGVDISPQMIEK--R---------NVVFDNFDAQDP-- 72 (161) T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT----TSEEEEEESSHHHHHH--T---------TSEEEEEECHTH-- T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh----CCEEEEEECCHHHHhh--h---------hhhhhhhhhhhh-- Confidence 333433333 678899999999999999999773 3356666666666653 0 111111111111 Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------cccCCCHHHHHH Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------FCSRLGGEECTK 309 (343) Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------~~~~~~~~~l~~ 309 (343) ...++.||+|+++.+++|++++.. +|++++++||| ||.++++.... +...++.+++.+ T Consensus 73 ~~~~~~fD~i~~~~~l~~~~d~~~--~l~~l~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (161) T PF13489_consen 73 PFPDGSFDLIICNDVLEHLPDPEE--FLKELSRLLKP-GGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQ 149 (161) T ss_dssp HCHSSSEEEEEEESSGGGSSHHHH--HHHHHHHCEEE-EEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHH T ss_pred hccccchhhHhhHHHHhhcccHHH--HHHHHHHhcCC-CCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHH Confidence 124679999999999999997655 99999999999 99999884321 111233899999 Q ss_pred HHHhcCCcEEE Q 019282 310 RLTSLGLEYIG 320 (343) Q Consensus 310 ~L~~aGf~~v~ 320 (343) +++++||++++ T Consensus 150 ll~~~G~~iv~ 160 (161) T PF13489_consen 150 LLEQAGFEIVE 160 (161) T ss_dssp HHHHTTEEEEE T ss_pred HHHHCCCEEEE Confidence 99999999875 No 13 >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional Probab=99.61 E-value=1.2e-14 Score=139.59 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=106.4 Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343) Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343) ..+.+...+...++.+|||||||+|.++..++...+. .++++|++..+....+..........++.++.++..+++ T Consensus 110 k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~---~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp- 185 (322) T PRK15068 110 KWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAK---LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP- 185 (322) T ss_pred HHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCC---EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC- Confidence 3445555555456789999999999999999885322 377777777776543321111001224556655333333 Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec------------cccc-------cCCCHHHHHH Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN------------IKFC-------SRLGGEECTK 309 (343) Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~------------~~~~-------~~~~~~~l~~ 309 (343) ..+.||+|+|..+++|..++.. +|++++++|+| ||.+++... .+-+ ...+.+++.. T Consensus 186 --~~~~FD~V~s~~vl~H~~dp~~--~L~~l~~~Lkp-GG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~ 260 (322) T PRK15068 186 --ALKAFDTVFSMGVLYHRRSPLD--HLKQLKDQLVP-GGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKN 260 (322) T ss_pred --CcCCcCEEEECChhhccCCHHH--HHHHHHHhcCC-CcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHH Confidence 3578999999999999988765 99999999999 999987620 0000 0124788999 Q ss_pred HHHhcCCcEEEeeecccc--ccchhHHhhh Q 019282 310 RLTSLGLEYIGKKTHDSL--LFNHYEIWFE 337 (343) Q Consensus 310 ~L~~aGf~~v~~~~~~~l--~~~~~e~w~~ 337 (343) +|+++||+.++....... .......|+. T Consensus 261 ~L~~aGF~~i~~~~~~~t~~~eqr~t~w~~ 290 (322) T PRK15068 261 WLERAGFKDVRIVDVSVTTTEEQRKTEWMT 290 (322) T ss_pred HHHHcCCceEEEEeCCCCCccccccccCcc Confidence 999999999987654332 2233555654 No 14 >PRK11207 tellurite resistance protein TehB; Provisional Probab=99.60 E-value=1.7e-14 Score=129.11 Aligned_cols=133 Identities=16% Similarity=0.242 Sum_probs=92.5 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCce Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343) +...++.+|||+|||+|..+..+++ .+..++++|.++.+.+.+++... .+. . ++..... |+.++...++| T Consensus 26 l~~~~~~~vLDiGcG~G~~a~~La~----~g~~V~gvD~S~~~i~~a~~~~~~~~~-~-~v~~~~~---d~~~~~~~~~f 96 (197) T PRK11207 26 VKVVKPGKTLDLGCGNGRNSLYLAA----NGFDVTAWDKNPMSIANLERIKAAENL-D-NLHTAVV---DLNNLTFDGEY 96 (197) T ss_pred cccCCCCcEEEECCCCCHHHHHHHH----CCCEEEEEeCCHHHHHHHHHHHHHcCC-C-cceEEec---ChhhCCcCCCc Confidence 4455678999999999999999998 34466666777776666555433 233 1 2444433 44433345689 Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc---c------cccCCCHHHHHHHHHhcCCcEEEe Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI---K------FCSRLGGEECTKRLTSLGLEYIGK 321 (343) Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~---~------~~~~~~~~~l~~~L~~aGf~~v~~ 321 (343) |+|+++.++||+++.....++++++++||| ||.+++.... + +...+.++++.+.++ ||+.+.. T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp-gG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197) T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKP-GGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKY 168 (197) T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCC-CcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEe Confidence 999999999998877777899999999999 9996543111 1 111233788888886 8988765 No 15 >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. Probab=99.60 E-value=4.9e-14 Score=128.51 Aligned_cols=147 Identities=14% Similarity=0.228 Sum_probs=101.6 Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF 249 (343) Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~ 249 (343) +.+...+.++++.+|||+|||+|.++..+++..+ ...++++|+ ++.+.+.++++...... .++.++.++..+++ + T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~--s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~-~ 110 (231) T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDF--SENMLSVGRQKVKDAGL-HNVELVHGNAMELP-F 110 (231) T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHhcCC-CceEEEEechhcCC-C Confidence 3444556788899999999999999999998754 334455555 44555555443322112 24566666444433 2 Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc------------------------------- Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF------------------------------- 298 (343) Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~------------------------------- 298 (343) .+++||+|++..+++|+++... +++++.++|+| ||.+++.+.... T Consensus 111 -~~~~fD~V~~~~~l~~~~~~~~--~l~~~~~~Lk~-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 186 (231) T TIGR02752 111 -DDNSFDYVTIGFGLRNVPDYMQ--VLREMYRVVKP-GGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEY 186 (231) T ss_pred -CCCCccEEEEecccccCCCHHH--HHHHHHHHcCc-CeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHH Confidence 3578999999999999988765 99999999999 999987532110 Q ss_pred ------c-cCCCHHHHHHHHHhcCCcEEEeeecc Q 019282 299 ------C-SRLGGEECTKRLTSLGLEYIGKKTHD 325 (343) Q Consensus 299 ------~-~~~~~~~l~~~L~~aGf~~v~~~~~~ 325 (343) . .-++.+++.++|+++||++++..... T Consensus 187 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231) T TIGR02752 187 SWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231) T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcc Confidence 0 00125788999999999988766543 No 16 >PLN02336 phosphoethanolamine N-methyltransferase Probab=99.59 E-value=4.2e-14 Score=142.57 Aligned_cols=158 Identities=16% Similarity=0.267 Sum_probs=107.9 Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343) Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343) ..+.+.+.+.+.++.+|||||||+|..+..+++.++ . .++++|+++.+.+.++++.. +. ..++.+..++..+.+ T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~--~v~gvDiS~~~l~~A~~~~~-~~-~~~v~~~~~d~~~~~- 327 (475) T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFD-V--HVVGIDLSVNMISFALERAI-GR-KCSVEFEVADCTKKT- 327 (475) T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHhh-cC-CCceEEEEcCcccCC- Confidence 445566667778889999999999999999988652 3 45555555566655544322 22 224566655333322 Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----------c-----ccCCCHHHHHHHHH Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----------F-----CSRLGGEECTKRLT 312 (343) Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----------~-----~~~~~~~~l~~~L~ 312 (343) + ++++||+|++..+++|++++.. ++++++++||| ||.++++.... + ...+..+++.++++ T Consensus 328 ~-~~~~fD~I~s~~~l~h~~d~~~--~l~~~~r~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 403 (475) T PLN02336 328 Y-PDNSFDVIYSRDTILHIQDKPA--LFRSFFKWLKP-GGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLK 403 (475) T ss_pred C-CCCCEEEEEECCcccccCCHHH--HHHHHHHHcCC-CeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHH Confidence 2 3568999999999999998766 99999999999 99999873110 0 11223888999999 Q ss_pred hcCCcEEEeeeccccccchhHHhh Q 019282 313 SLGLEYIGKKTHDSLLFNHYEIWF 336 (343) Q Consensus 313 ~aGf~~v~~~~~~~l~~~~~e~w~ 336 (343) ++||+++..+....-....+..|+ T Consensus 404 ~aGF~~i~~~d~~~~~~~~~~~~~ 427 (475) T PLN02336 404 DAGFDDVIAEDRTDQFLQVLQREL 427 (475) T ss_pred HCCCeeeeeecchHHHHHHHHHHH Confidence 999999876654333333343443 No 17 >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional Probab=99.59 E-value=5.3e-14 Score=138.02 Aligned_cols=145 Identities=15% Similarity=0.162 Sum_probs=103.6 Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343) .+..+++.+.+.+.++++.+|||||||+|.++..+++.+ +..++++|.++.+.+.++++.. +. .+.+... T Consensus 151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~---g~~V~giDlS~~~l~~A~~~~~-~l---~v~~~~~--- 220 (383) T PRK11705 151 AQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY---GVSVVGVTISAEQQKLAQERCA-GL---PVEIRLQ--- 220 (383) T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHhc-cC---eEEEEEC--- Confidence 356778888888899999999999999999999998764 3356667777777776665432 22 2333332 Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec---------cccccCC--------CHHHH Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN---------IKFCSRL--------GGEEC 307 (343) Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~---------~~~~~~~--------~~~~l 307 (343) ++.+. +++||.|+++.+++|++......++++++++||| ||.+++... ..+...+ ..+++ T Consensus 221 D~~~l--~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~Lkp-GG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i 297 (383) T PRK11705 221 DYRDL--NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKP-DGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQI 297 (383) T ss_pred chhhc--CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCC-CcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHH Confidence 44333 4689999999999999887777799999999999 999988621 1122111 25666 Q ss_pred HHHHHhcCCcEEEeee Q 019282 308 TKRLTSLGLEYIGKKT 323 (343) Q Consensus 308 ~~~L~~aGf~~v~~~~ 323 (343) ...++ .||++...+. T Consensus 298 ~~~~~-~~~~v~d~~~ 312 (383) T PRK11705 298 AQASE-GLFVMEDWHN 312 (383) T ss_pred HHHHH-CCcEEEEEec Confidence 66555 6898776554 No 18 >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Probab=99.59 E-value=9.8e-15 Score=135.05 Aligned_cols=110 Identities=13% Similarity=0.192 Sum_probs=80.4 Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343) Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343) +.++.+|||||||+|..+..+++.+...+..++++|+++.|.+.++++........++.++.++ +.+.+. ..+|+| T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d---~~~~~~-~~~D~v 129 (247) T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGD---IRDIAI-ENASMV 129 (247) T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCC---hhhCCC-CCCCEE Confidence 5678899999999999999888754333455666666667776666544321122256666653 333322 359999 Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +++.++||+++.....++++++++||| ||.+++. T Consensus 130 v~~~~l~~l~~~~~~~~l~~i~~~Lkp-GG~l~l~ 163 (247) T PRK15451 130 VLNFTLQFLEPSERQALLDKIYQGLNP-GGALVLS 163 (247) T ss_pred ehhhHHHhCCHHHHHHHHHHHHHhcCC-CCEEEEE Confidence 999999999877777799999999999 9999886 No 19 >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] Probab=99.58 E-value=4.5e-15 Score=134.05 Aligned_cols=138 Identities=19% Similarity=0.192 Sum_probs=98.1 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343) -++.+|||||||-|.++..+|+ .+..|+++|.+...+..++..+...... +.......+++.. ..++||+|+ T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr----~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~--~~~~FDvV~ 129 (243) T COG2227 58 LPGLRVLDVGCGGGILSEPLAR----LGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLAS--AGGQFDVVT 129 (243) T ss_pred CCCCeEEEecCCccHhhHHHHH----CCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHh--cCCCccEEE Confidence 4688999999999999999999 5566777777777777766554422211 1122222233332 237999999 Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------------------------cccCC-CHHHHHHHHHhc Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------------------------FCSRL-GGEECTKRLTSL 314 (343) Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------------------------~~~~~-~~~~l~~~L~~a 314 (343) |..|++|++++.. ++..+.+++|| ||.++++.-.. ....+ .++++..++..+ T Consensus 130 cmEVlEHv~dp~~--~~~~c~~lvkP-~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~ 206 (243) T COG2227 130 CMEVLEHVPDPES--FLRACAKLVKP-GGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGA 206 (243) T ss_pred EhhHHHccCCHHH--HHHHHHHHcCC-CcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccC Confidence 9999999999987 99999999999 99999872110 01111 289999999999 Q ss_pred CCcEEEeeeccccc Q 019282 315 GLEYIGKKTHDSLL 328 (343) Q Consensus 315 Gf~~v~~~~~~~l~ 328 (343) |++..........+ T Consensus 207 ~~~~~~~~g~~y~p 220 (243) T COG2227 207 NLKIIDRKGLTYNP 220 (243) T ss_pred CceEEeecceEecc Confidence 99887766544433 No 20 >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] Probab=99.57 E-value=9.1e-15 Score=133.06 Aligned_cols=145 Identities=20% Similarity=0.222 Sum_probs=102.4 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCC-CCCcE-EEecccCCcCCCCCCCceeEEE Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLL-HKRPI-IVRGEDMDFTKFGSGVVYDLIY 259 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~-~~~~~-~~~~~~~dl~~~~~~~~fDlIv 259 (343) |.+|||+|||+|.++..|++ .+..|+|||.+..+.+.+++....... +..+. .+...+.+.++. .+.||.|+ T Consensus 90 g~~ilDvGCGgGLLSepLAr----lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~--~~~fDaVv 163 (282) T KOG1270|consen 90 GMKILDVGCGGGLLSEPLAR----LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL--TGKFDAVV 163 (282) T ss_pred CceEEEeccCccccchhhHh----hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--ccccceee Confidence 47899999999999999999 567799999999988888776432211 11111 111122233322 46799999 Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc-------------------------ccccCCCHHHHHHHHHhc Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI-------------------------KFCSRLGGEECTKRLTSL 314 (343) Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~-------------------------~~~~~~~~~~l~~~L~~a 314 (343) |..+++|+.++.. +++.+.+.||| ||.++|+.-. .+..-.+++++..+++.+ T Consensus 164 csevleHV~dp~~--~l~~l~~~lkP-~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~ 240 (282) T KOG1270|consen 164 CSEVLEHVKDPQE--FLNCLSALLKP-NGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNAN 240 (282) T ss_pred eHHHHHHHhCHHH--HHHHHHHHhCC-CCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhc Confidence 9999999998866 99999999999 9999998200 011112389999999999 Q ss_pred CCcEEEeeeccccccchhHHh Q 019282 315 GLEYIGKKTHDSLLFNHYEIW 335 (343) Q Consensus 315 Gf~~v~~~~~~~l~~~~~e~w 335 (343) ++.+......-..++...+.| T Consensus 241 ~~~v~~v~G~~y~p~s~~w~~ 261 (282) T KOG1270|consen 241 GAQVNDVVGEVYNPISGQWLW 261 (282) T ss_pred CcchhhhhccccccccceeEe Confidence 998776665555555544444 No 21 >TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. Probab=99.56 E-value=4.2e-14 Score=129.96 Aligned_cols=137 Identities=17% Similarity=0.207 Sum_probs=95.9 Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343) Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343) ++++.+|||||||+|..+..+++.+...+..++++|.++.+.+.++++........++.++.+ ++.+++. ..+|+| T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~---d~~~~~~-~~~d~v 126 (239) T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN---DIRHVEI-KNASMV 126 (239) T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEC---ChhhCCC-CCCCEE Confidence 357789999999999999999886543344566666666666665554332111224556655 4443332 358999 Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------------------------cccC Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------------------------FCSR 301 (343) Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------------------------~~~~ 301 (343) ++..++||+++.....++++++++||| ||.+++..... .... T Consensus 127 ~~~~~l~~~~~~~~~~~l~~i~~~Lkp-gG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 205 (239) T TIGR00740 127 ILNFTLQFLPPEDRIALLTKIYEGLNP-NGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRT 205 (239) T ss_pred eeecchhhCCHHHHHHHHHHHHHhcCC-CeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCC Confidence 999999999877677799999999999 99999873110 1113 Q ss_pred CCHHHHHHHHHhcCCcEEE Q 019282 302 LGGEECTKRLTSLGLEYIG 320 (343) Q Consensus 302 ~~~~~l~~~L~~aGf~~v~ 320 (343) ++.+++.++++++||+.+. T Consensus 206 ~s~~~~~~~l~~aGF~~~~ 224 (239) T TIGR00740 206 DSIETHKARLKNVGFSHVE 224 (239) T ss_pred CCHHHHHHHHHHcCCchHH Confidence 3488899999999997544 No 22 >TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB Probab=99.56 E-value=6.4e-14 Score=125.14 Aligned_cols=133 Identities=16% Similarity=0.218 Sum_probs=89.9 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCce Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343) +...++.+|||+|||+|..+..+++ .+..++++|.++.+.+.++++.. .+. .+..... ++.....+++| T Consensus 26 ~~~~~~~~vLDiGcG~G~~a~~la~----~g~~V~~iD~s~~~l~~a~~~~~~~~~---~v~~~~~---d~~~~~~~~~f 95 (195) T TIGR00477 26 VKTVAPCKTLDLGCGQGRNSLYLSL----AGYDVRAWDHNPASIASVLDMKARENL---PLRTDAY---DINAAALNEDY 95 (195) T ss_pred hccCCCCcEEEeCCCCCHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHHHhCC---CceeEec---cchhccccCCC Confidence 4455567999999999999999997 34456666666666665544332 232 2222222 33322334689 Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec-c--------ccccCCCHHHHHHHHHhcCCcEEEee Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN-I--------KFCSRLGGEECTKRLTSLGLEYIGKK 322 (343) Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~-~--------~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343) |+|+++.+++|++......++++++++||| ||++++... . +....+.++++.+.+. +|+++... T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195) T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRP-GGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYN 168 (195) T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCC-CcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEee Confidence 999999999999877777899999999999 999655421 1 1111234888988885 58877655 No 23 >PRK01683 trans-aconitate 2-methyltransferase; Provisional Probab=99.55 E-value=2.7e-13 Score=125.83 Aligned_cols=138 Identities=18% Similarity=0.161 Sum_probs=95.7 Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343) Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343) ..+.+...+.+.++.+|||||||+|.++..+++..+...++++|+ ++.+...+++.. .++.+..+ |+.. T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~--s~~~i~~a~~~~------~~~~~~~~---d~~~ 87 (258) T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDS--SPAMLAEARSRL------PDCQFVEA---DIAS 87 (258) T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHhC------CCCeEEEC---chhc Confidence 344455566778889999999999999999998776555555554 445555554321 13445554 3333 Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----------------cc-----------c Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----------------FC-----------S 300 (343) Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----------------~~-----------~ 300 (343) +...++||+|+++.++||+++... ++++++++||| ||.+++..... +. . T Consensus 88 ~~~~~~fD~v~~~~~l~~~~d~~~--~l~~~~~~Lkp-gG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 164 (258) T PRK01683 88 WQPPQALDLIFANASLQWLPDHLE--LFPRLVSLLAP-GGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAP 164 (258) T ss_pred cCCCCCccEEEEccChhhCCCHHH--HHHHHHHhcCC-CcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcC Confidence 334568999999999999988755 99999999999 99998863110 00 0 Q ss_pred CCCHHHHHHHHHhcCCcEEE Q 019282 301 RLGGEECTKRLTSLGLEYIG 320 (343) Q Consensus 301 ~~~~~~l~~~L~~aGf~~v~ 320 (343) ....+.+.+.+.++|+.+.. T Consensus 165 ~~~~~~~~~~l~~~g~~v~~ 184 (258) T PRK01683 165 LPPPHAYYDALAPAACRVDI 184 (258) T ss_pred CCCHHHHHHHHHhCCCceee Confidence 01266788889999987543 No 24 >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] Probab=99.54 E-value=1.6e-13 Score=124.36 Aligned_cols=144 Identities=16% Similarity=0.196 Sum_probs=108.8 Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC------CceEEEEcChhHHHHHHHHhcccCCCCCC-CcEEEeccc Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP------ENFHCLERDELSLMAAFRYELPSQGLLHK-RPIIVRGED 243 (343) Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~------~~~~vvdid~s~~~~a~a~~~~~~~~~~~-~~~~~~~~~ 243 (343) +.....++..++.++||++||||..+..+.++... .++++.|+++.++..+..++. +.++... +..++.+++ T Consensus 90 d~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~-~~~l~~~~~~~w~~~dA 168 (296) T KOG1540|consen 90 DMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAK-KRPLKASSRVEWVEGDA 168 (296) T ss_pred HHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHh-hcCCCcCCceEEEeCCc Confidence 33455577788899999999999999999998865 667777777766655543332 2344432 367888888 Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc--------------------------- Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI--------------------------- 296 (343) Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~--------------------------- 296 (343) ++++ + ++++||..++.+.+..+++.+. .|++++|+||| ||++.+.... T Consensus 169 E~Lp-F-dd~s~D~yTiafGIRN~th~~k--~l~EAYRVLKp-GGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~ia 243 (296) T KOG1540|consen 169 EDLP-F-DDDSFDAYTIAFGIRNVTHIQK--ALREAYRVLKP-GGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIA 243 (296) T ss_pred ccCC-C-CCCcceeEEEecceecCCCHHH--HHHHHHHhcCC-CcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhh Confidence 8888 6 4789999999999999999877 99999999999 9999875100 Q ss_pred ----------ccccCCC-HHHHHHHHHhcCCcEEE Q 019282 297 ----------KFCSRLG-GEECTKRLTSLGLEYIG 320 (343) Q Consensus 297 ----------~~~~~~~-~~~l~~~L~~aGf~~v~ 320 (343) ..+..+. .+++..+++++||..+. T Consensus 244 gd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296) T KOG1540|consen 244 GDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296) T ss_pred hhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc Confidence 0011222 78899999999998875 No 25 >PLN02490 MPBQ/MSBQ methyltransferase Probab=99.54 E-value=2.9e-13 Score=130.21 Aligned_cols=143 Identities=18% Similarity=0.211 Sum_probs=98.8 Q ss_pred HHHHHhcCC-CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC Q 019282 171 EFLAEASHI-TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF 249 (343) Q Consensus 171 ~~l~~~~~l-~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~ 249 (343) +.+.+...+ .++.+|||||||+|.++..+++..+...++++|+++ .+.+.+++... ..++.++.++..+++ + T Consensus 102 ~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~--~mL~~A~~k~~----~~~i~~i~gD~e~lp-~ 174 (340) T PLN02490 102 DDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP--HQLAKAKQKEP----LKECKIIEGDAEDLP-F 174 (340) T ss_pred HHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhhh----ccCCeEEeccHHhCC-C Confidence 334443444 467899999999999999998876555555555544 55554444321 123445555443333 2 Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc--cc----------ccCCCHHHHHHHHHhcCCc Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI--KF----------CSRLGGEECTKRLTSLGLE 317 (343) Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~--~~----------~~~~~~~~l~~~L~~aGf~ 317 (343) .+++||+|++..+++|++++.. .|++++++||| ||++++.... .+ ......+++.++|+++||+ T Consensus 175 -~~~sFDvVIs~~~L~~~~d~~~--~L~e~~rvLkP-GG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~ 250 (340) T PLN02490 175 -PTDYADRYVSAGSIEYWPDPQR--GIKEAYRVLKI-GGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFK 250 (340) T ss_pred -CCCceeEEEEcChhhhCCCHHH--HHHHHHHhcCC-CcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCe Confidence 3568999999999999998766 99999999999 9999775321 10 1122489999999999999 Q ss_pred EEEeeec Q 019282 318 YIGKKTH 324 (343) Q Consensus 318 ~v~~~~~ 324 (343) .++.+.. T Consensus 251 ~V~i~~i 257 (340) T PLN02490 251 DVKLKRI 257 (340) T ss_pred EEEEEEc Confidence 9886653 No 26 >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A .... Probab=99.54 E-value=7.3e-14 Score=112.58 Aligned_cols=109 Identities=23% Similarity=0.355 Sum_probs=77.2 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343) |+.+|||||||+|.++..+++..+...++++|+++ .+.+.++++........++.++.++. . ......+.||+|++ T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~i~~~~~d~-~-~~~~~~~~~D~v~~ 76 (112) T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISP--EMLEIARERAAEEGLSDRITFVQGDA-E-FDPDFLEPFDLVIC 76 (112) T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSH--HHHHHHHHHHHHTTTTTTEEEEESCC-H-GGTTTSSCEEEEEE T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEECcc-c-cCcccCCCCCEEEE Confidence 57899999999999999999966666655655555 44544454442222344777777644 1 22334567999999 Q ss_pred cc-ccccCCc-hHHHHHHHHHHhccCCCCcEEEEEe Q 019282 261 SA-VFLHMPD-KLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 261 ~~-v~~hl~~-~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) .. .++++.. ++...+++++++.|+| ||++++.. T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~lvi~~ 111 (112) T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKP-GGRLVINT 111 (112) T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEE-EEEEEEEE T ss_pred CCCccccccchhHHHHHHHHHHHhcCC-CcEEEEEE Confidence 99 5554433 4566799999999999 99999863 No 27 >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes. Probab=99.53 E-value=1.7e-13 Score=124.44 Aligned_cols=133 Identities=21% Similarity=0.205 Sum_probs=92.9 Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEc Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343) Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343) .+|||||||+|..+..+++.++...+++ +|.++.+...++++.. .+.. .++.++.. |+...+..++||+|++. T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~g--id~s~~~~~~a~~~~~~~gl~-~~i~~~~~---d~~~~~~~~~fD~I~~~ 74 (224) T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHG--YTISPEQAEVGRERIRALGLQ-GRIRIFYR---DSAKDPFPDTYDLVFGF 74 (224) T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHhcCCC-cceEEEec---ccccCCCCCCCCEeehH Confidence 3799999999999999998775444444 4555555555554332 3332 25555554 33222234689999999 Q ss_pred cccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc---------ccc--CCCHHHHHHHHHhcCCcEEEeeec Q 019282 262 AVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK---------FCS--RLGGEECTKRLTSLGLEYIGKKTH 324 (343) Q Consensus 262 ~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~---------~~~--~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343) .+++|+++... +|++++++||| ||.+++..... ... ..+.+++.+.++++||+++..... T Consensus 75 ~~l~~~~~~~~--~l~~~~~~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224) T smart00828 75 EVIHHIKDKMD--LFSNISRHLKD-GGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDA 145 (224) T ss_pred HHHHhCCCHHH--HHHHHHHHcCC-CCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEEC Confidence 99999988654 99999999999 99999874211 111 123788999999999999876643 No 28 >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed Probab=99.53 E-value=3e-13 Score=126.61 Aligned_cols=147 Identities=20% Similarity=0.196 Sum_probs=100.6 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCce Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343) ..++++.+|||||||+|..+..+++..... ..++++|.++.+.+.++++.. .+. .++.+..++..+++ + .++.| T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~--~~v~~~~~d~~~l~-~-~~~~f 147 (272) T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPT-GKVIGVDMTPEMLAKARANARKAGY--TNVEFRLGEIEALP-V-ADNSV 147 (272) T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCC--CCEEEEEcchhhCC-C-CCCce Confidence 467889999999999999888777755432 245555655566666555433 222 24556555433333 2 35689 Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------------------cccCCCHHHHHHHHHhcCCc Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------------------FCSRLGGEECTKRLTSLGLE 317 (343) Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------------------~~~~~~~~~l~~~L~~aGf~ 317 (343) |+|+++.+++|.++... ++++++++||| ||++++..... ....+..+++.++|+++||. T Consensus 148 D~Vi~~~v~~~~~d~~~--~l~~~~r~Lkp-GG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~ 224 (272) T PRK11873 148 DVIISNCVINLSPDKER--VFKEAFRVLKP-GGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFV 224 (272) T ss_pred eEEEEcCcccCCCCHHH--HHHHHHHHcCC-CcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCC Confidence 99999999999887655 99999999999 99999863110 00112377899999999999 Q ss_pred EEEeeeccccccch Q 019282 318 YIGKKTHDSLLFNH 331 (343) Q Consensus 318 ~v~~~~~~~l~~~~ 331 (343) .+..........+. T Consensus 225 ~v~i~~~~~~~l~~ 238 (272) T PRK11873 225 DITIQPKREYRIPD 238 (272) T ss_pred ceEEEeccceeccc Confidence 98765544443333 No 29 >PRK08317 hypothetical protein; Provisional Probab=99.51 E-value=8e-13 Score=119.91 Aligned_cols=147 Identities=23% Similarity=0.315 Sum_probs=100.9 Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-CCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343) Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343) ..+.+.+...+.++.+|||+|||+|.++..+++.+ +...++++|+++... ..+++.... ...++.+..++..+++ T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~--~~a~~~~~~--~~~~~~~~~~d~~~~~ 82 (241) T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML--ALAKERAAG--LGPNVEFVRGDADGLP 82 (241) T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHH--HHHHHHhhC--CCCceEEEecccccCC Confidence 44556666788899999999999999999999876 445556666655444 433432111 1224455544333322 Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc----cc-------------------ccCCCH Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI----KF-------------------CSRLGG 304 (343) Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~----~~-------------------~~~~~~ 304 (343) + .++.||+|++..+++|+++... ++++++++||| ||.+++.... .+ ...+.. T Consensus 83 -~-~~~~~D~v~~~~~~~~~~~~~~--~l~~~~~~L~~-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (241) T PRK08317 83 -F-PDGSFDAVRSDRVLQHLEDPAR--ALAEIARVLRP-GGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLG 157 (241) T ss_pred -C-CCCCceEEEEechhhccCCHHH--HHHHHHHHhcC-CcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHH Confidence 2 3578999999999999998766 99999999999 9999876310 00 011125 Q ss_pred HHHHHHHHhcCCcEEEeeec Q 019282 305 EECTKRLTSLGLEYIGKKTH 324 (343) Q Consensus 305 ~~l~~~L~~aGf~~v~~~~~ 324 (343) ..+.+.|+++||+.+..... T Consensus 158 ~~~~~~l~~aGf~~~~~~~~ 177 (241) T PRK08317 158 RRLPGLFREAGLTDIEVEPY 177 (241) T ss_pred HHHHHHHHHcCCCceeEEEE Confidence 67889999999998876554 No 30 >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... Probab=99.50 E-value=1.7e-13 Score=106.30 Aligned_cols=95 Identities=22% Similarity=0.440 Sum_probs=65.8 Q ss_pred EEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEccccc Q 019282 186 LEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFL 265 (343) Q Consensus 186 LDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~ 265 (343) ||+|||+|..+..+++. +...++++|++. .+...+++... .....+..++..+++ + ++++||+|++..+++ T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~--~~~~~~~~~~~----~~~~~~~~~d~~~l~-~-~~~sfD~v~~~~~~~ 71 (95) T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISE--EMLEQARKRLK----NEGVSFRQGDAEDLP-F-PDNSFDVVFSNSVLH 71 (95) T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-H--HHHHHHHHHTT----TSTEEEEESBTTSSS-S--TT-EEEEEEESHGG T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCH--HHHHHHHhccc----ccCchheeehHHhCc-c-cccccccccccccee Confidence 89999999999999996 445555555554 55554444322 113335555445553 3 478999999999999 Q ss_pred cCCchHHHHHHHHHHhccCCCCcEEEE Q 019282 266 HMPDKLVWVGLERLASKLRPYDGRIFV 292 (343) Q Consensus 266 hl~~~~~~~~L~~l~r~LkP~GG~lvi 292 (343) |+.+... ++++++|+||| ||++++ T Consensus 72 ~~~~~~~--~l~e~~rvLk~-gG~l~~ 95 (95) T PF08241_consen 72 HLEDPEA--ALREIYRVLKP-GGRLVI 95 (95) T ss_dssp GSSHHHH--HHHHHHHHEEE-EEEEEE T ss_pred eccCHHH--HHHHHHHHcCc-CeEEeC Confidence 9955544 99999999999 999986 No 31 >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. Probab=99.49 E-value=1.2e-12 Score=124.77 Aligned_cols=144 Identities=13% Similarity=0.141 Sum_probs=100.7 Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT 247 (343) Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~ 247 (343) ..+.+.+...+.++.+|||||||+|.++..+++.++...++++|+ +.+.+.++++.. .+. .+++.++.+ |+. T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~---~~~~~~a~~~~~~~gl-~~rv~~~~~---d~~ 209 (306) T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL---PGAIDLVNENAAEKGV-ADRMRGIAV---DIY 209 (306) T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec---HHHHHHHHHHHHhCCc-cceEEEEec---Ccc Confidence 345566667788889999999999999999999887666666654 234444444333 333 336666665 332 Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec---cccc--------------------cCCCH Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN---IKFC--------------------SRLGG 304 (343) Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~---~~~~--------------------~~~~~ 304 (343) +.... .+|+|++..++|+.+++....+|+++++.|+| ||++++.+. .+.. ..... T Consensus 210 ~~~~~-~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~p-gG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (306) T TIGR02716 210 KESYP-EADAVLFCRILYSANEQLSTIMCKKAFDAMRS-GGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQ 287 (306) T ss_pred CCCCC-CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCC-CCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCH Confidence 22122 47999999999988887666799999999999 999988731 0000 00116 Q ss_pred HHHHHHHHhcCCcEEEe Q 019282 305 EECTKRLTSLGLEYIGK 321 (343) Q Consensus 305 ~~l~~~L~~aGf~~v~~ 321 (343) +++.++|+++||+.++. T Consensus 288 ~e~~~ll~~aGf~~v~~ 304 (306) T TIGR02716 288 ARYKEILESLGYKDVTM 304 (306) T ss_pred HHHHHHHHHcCCCeeEe Confidence 88999999999987753 No 32 >PRK10258 biotin biosynthesis protein BioC; Provisional Probab=99.48 E-value=1.7e-12 Score=120.05 Aligned_cols=138 Identities=15% Similarity=0.157 Sum_probs=94.1 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343) ++...+.+.+.+...++.+|||+|||+|.++..+++. +..++++|.++.+.+.+++... ...++.++..+ T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~ 96 (251) T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER----GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIES 96 (251) T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc----CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCccc Confidence 4455666666666556789999999999999888762 3345555555566665544221 12234443333 Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------------------cccCCCHHHH Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------------------FCSRLGGEEC 307 (343) Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------------------~~~~~~~~~l 307 (343) ++ + .+++||+|+++.+++++++... +|.++.++||| ||.++++.... ....+..+++ T Consensus 97 ~~-~-~~~~fD~V~s~~~l~~~~d~~~--~l~~~~~~Lk~-gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l 171 (251) T PRK10258 97 LP-L-ATATFDLAWSNLAVQWCGNLST--ALRELYRVVRP-GGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAI 171 (251) T ss_pred Cc-C-CCCcEEEEEECchhhhcCCHHH--HHHHHHHHcCC-CeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHH Confidence 33 2 3568999999999999988765 99999999999 99998873110 0111248888 Q ss_pred HHHHHhcCCcE Q 019282 308 TKRLTSLGLEY 318 (343) Q Consensus 308 ~~~L~~aGf~~ 318 (343) .+.+...|++. T Consensus 172 ~~~l~~~~~~~ 182 (251) T PRK10258 172 EQALNGWRYQH 182 (251) T ss_pred HHHHHhCCcee Confidence 88898888764 No 33 >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. Probab=99.48 E-value=7.3e-13 Score=120.10 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=92.3 Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343) Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343) ..++.+|||||||+|.++..+++. ...++++| .++.+...+++.........++.+..+ ++.... ++||+| T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD--~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~~~--~~fD~i 123 (219) T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVD--ISEQMVQMARNRAQGRDVAGNVEFEVN---DLLSLC--GEFDIV 123 (219) T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHHHhcCCCCceEEEEC---ChhhCC--CCcCEE Confidence 567889999999999999999873 23444554 444555544443322222224555554 444332 689999 Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----------c--------ccCCCHHHHHHHHHhcCCcEE Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----------F--------CSRLGGEECTKRLTSLGLEYI 319 (343) Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----------~--------~~~~~~~~l~~~L~~aGf~~v 319 (343) ++..+++|++......++.++.+++++ ++.+.+..... + ...+.++++.+.++++||+++ T Consensus 124 i~~~~l~~~~~~~~~~~l~~i~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 202 (219) T TIGR02021 124 VCMDVLIHYPASDMAKALGHLASLTKE-RVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIV 202 (219) T ss_pred EEhhHHHhCCHHHHHHHHHHHHHHhCC-CEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceee Confidence 999999999877777799999999998 76665531100 0 112248999999999999999 Q ss_pred Eeeec Q 019282 320 GKKTH 324 (343) Q Consensus 320 ~~~~~ 324 (343) ..+.+ T Consensus 203 ~~~~~ 207 (219) T TIGR02021 203 REGLV 207 (219) T ss_pred eeecc Confidence 87654 No 34 >PRK12335 tellurite resistance protein TehB; Provisional Probab=99.47 E-value=6.2e-13 Score=125.69 Aligned_cols=129 Identities=15% Similarity=0.185 Sum_probs=89.2 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343) ++.+|||||||+|+.+..+++ .+..++++|.+..+.+.++++.. .+. .+..... |+.....+++||+|+ T Consensus 120 ~~~~vLDlGcG~G~~~~~la~----~g~~V~avD~s~~ai~~~~~~~~~~~l---~v~~~~~---D~~~~~~~~~fD~I~ 189 (287) T PRK12335 120 KPGKALDLGCGQGRNSLYLAL----LGFDVTAVDINQQSLENLQEIAEKENL---NIRTGLY---DINSASIQEEYDFIL 189 (287) T ss_pred CCCCEEEeCCCCCHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEe---chhcccccCCccEEE Confidence 445999999999999999988 34456666666666665554433 222 2333332 333333367899999 Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEe--c-------cccccCCCHHHHHHHHHhcCCcEEEee Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH--N-------IKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343) Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~--~-------~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343) +..+++|++......+++++.++|+| ||++++.. . .++...+.++++.+.+. +|+++... T Consensus 190 ~~~vl~~l~~~~~~~~l~~~~~~Lkp-gG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~--~~~i~~~~ 258 (287) T PRK12335 190 STVVLMFLNRERIPAIIKNMQEHTNP-GGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQ--DWEIVKYN 258 (287) T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCC-CcEEEEEEecccccCCCCCCCCcccCHHHHHHHhC--CCEEEEEe Confidence 99999999877778899999999999 99966531 1 11122345888988885 48877653 No 35 >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. Probab=99.46 E-value=9.1e-13 Score=116.89 Aligned_cols=133 Identities=19% Similarity=0.241 Sum_probs=90.3 Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCc Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVV 254 (343) Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~ 254 (343) .....++.++||+|||.|+.+.+|++ .++.|+.+|.+....+..++.++ .++ .+.... .|+.++..++. T Consensus 25 a~~~~~~g~~LDlgcG~GRNalyLA~----~G~~VtAvD~s~~al~~l~~~a~~~~l---~i~~~~---~Dl~~~~~~~~ 94 (192) T PF03848_consen 25 AVPLLKPGKALDLGCGEGRNALYLAS----QGFDVTAVDISPVALEKLQRLAEEEGL---DIRTRV---ADLNDFDFPEE 94 (192) T ss_dssp HCTTS-SSEEEEES-TTSHHHHHHHH----TT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE----BGCCBS-TTT T ss_pred HHhhcCCCcEEEcCCCCcHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHhhcCc---eeEEEE---ecchhccccCC Confidence 34555677999999999999999999 67888888877776665555443 333 233333 46655555678 Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec---ccc------ccCCCHHHHHHHHHhcCCcEEEe Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN---IKF------CSRLGGEECTKRLTSLGLEYIGK 321 (343) Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~---~~~------~~~~~~~~l~~~L~~aGf~~v~~ 321 (343) ||+|++..+++|++.+..+.+++.+...++| ||++++... .++ .-.+.+.++...+. |++.+.. T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~p-GG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192) T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKP-GGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY 167 (192) T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEE-EEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCC-cEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE Confidence 9999999999999999889999999999999 999887421 111 11122567766664 6776653 No 36 >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. Probab=99.44 E-value=4.5e-14 Score=111.78 Aligned_cols=99 Identities=24% Similarity=0.306 Sum_probs=55.7 Q ss_pred EEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEccccc Q 019282 186 LEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFL 265 (343) Q Consensus 186 LDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~ 265 (343) ||||||+|.++..+++.++...++++|++++++..+ +++..... ............+.......++||+|+++.++| T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99) T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERA--RERLAELG-NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99) T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTT--CCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHH--HHHhhhcC-CcceeEEEeecCChhhcccccccceehhhhhHh Confidence 899999999999999988777777777777665222 33222111 112233333333333232336999999999999 Q ss_pred cCCchHHHHHHHHHHhccCCCCcEE Q 019282 266 HMPDKLVWVGLERLASKLRPYDGRI 290 (343) Q Consensus 266 hl~~~~~~~~L~~l~r~LkP~GG~l 290 (343) |+++.. .++++++++||| ||.| T Consensus 78 ~l~~~~--~~l~~~~~~L~p-gG~l 99 (99) T PF08242_consen 78 HLEDIE--AVLRNIYRLLKP-GGIL 99 (99) T ss_dssp --S-HH--HHHHHHTTT-TS-S-EE T ss_pred hhhhHH--HHHHHHHHHcCC-CCCC Confidence 996554 499999999999 9986 No 37 >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A .... Probab=99.44 E-value=6.8e-13 Score=113.45 Aligned_cols=108 Identities=22% Similarity=0.390 Sum_probs=78.1 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHH-cCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeE Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRY-LNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~-~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343) +.+.+|||+|||+|.++..+++. .+...++++|+++ .+...++++.+ .+. . ++.+..++..+++.. ..+.||+ T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~-~-ni~~~~~d~~~l~~~-~~~~~D~ 76 (152) T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGL-D-NIEFIQGDIEDLPQE-LEEKFDI 76 (152) T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTS-T-TEEEEESBTTCGCGC-SSTTEEE T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccc-c-ccceEEeehhccccc-cCCCeeE Confidence 45789999999999999999953 3445555555554 55555555433 333 2 677787755553321 2279999 Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) |++..+++|+.+... +++++.++|+| ||.+++... T Consensus 77 I~~~~~l~~~~~~~~--~l~~~~~~lk~-~G~~i~~~~ 111 (152) T PF13847_consen 77 IISNGVLHHFPDPEK--VLKNIIRLLKP-GGILIISDP 111 (152) T ss_dssp EEEESTGGGTSHHHH--HHHHHHHHEEE-EEEEEEEEE T ss_pred EEEcCchhhccCHHH--HHHHHHHHcCC-CcEEEEEEC Confidence 999999999998866 89999999999 999988753 No 38 >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification Probab=99.43 E-value=1.7e-12 Score=121.41 Aligned_cols=160 Identities=15% Similarity=0.168 Sum_probs=105.4 Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT 247 (343) Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~ 247 (343) +.+.+...+.--.|.+|||||||.|.++..++..-+ -.|+|+|++.......+.... .+. ......+.-..++++ T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA---~~ViGiDP~~lf~~QF~~i~~~lg~-~~~~~~lplgvE~Lp 178 (315) T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA---KSVIGIDPSPLFYLQFEAIKHFLGQ-DPPVFELPLGVEDLP 178 (315) T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC---CEEEEECCChHHHHHHHHHHHHhCC-CccEEEcCcchhhcc Confidence 455555555334588999999999999998887432 248899988776554322111 111 112222211223333 Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe------------ccccccC-------CCHHHHH Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH------------NIKFCSR-------LGGEECT 308 (343) Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~------------~~~~~~~-------~~~~~l~ 308 (343) ..+.||.|+|.+++.|..++.. .|.++++.|+| ||.+++.. +.+-+.. .+...+. T Consensus 179 ---~~~~FDtVF~MGVLYHrr~Pl~--~L~~Lk~~L~~-gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~ 252 (315) T PF08003_consen 179 ---NLGAFDTVFSMGVLYHRRSPLD--HLKQLKDSLRP-GGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALK 252 (315) T ss_pred ---ccCCcCEEEEeeehhccCCHHH--HHHHHHHhhCC-CCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHH Confidence 3578999999999999999987 99999999999 99999762 1111111 1288899 Q ss_pred HHHHhcCCcEEEeeeccc--cccchhHHhhhh Q 019282 309 KRLTSLGLEYIGKKTHDS--LLFNHYEIWFEF 338 (343) Q Consensus 309 ~~L~~aGf~~v~~~~~~~--l~~~~~e~w~~~ 338 (343) .+|+++||+.++.-.... .-...-..|+.+ T Consensus 253 ~wl~r~gF~~v~~v~~~~Tt~~EQR~T~Wm~~ 284 (315) T PF08003_consen 253 NWLERAGFKDVRCVDVSPTTIEEQRKTDWMDF 284 (315) T ss_pred HHHHHcCCceEEEecCccCCHHHhccCCCcCc Confidence 999999999988654332 223345555543 No 39 >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Probab=99.42 E-value=1.1e-11 Score=112.83 Aligned_cols=144 Identities=19% Similarity=0.241 Sum_probs=96.6 Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCC Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGS 251 (343) Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 251 (343) +.......++.+|||||||+|.++..++...+ ...++++|+++ .+...+++.........++.+..++..+.. . . T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~-~ 118 (239) T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE--GMLAVGREKLRDLGLSGNVEFVQGDAEALP-F-P 118 (239) T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHHhhcccccccCeEEEecccccCC-C-C Confidence 34444566778999999999999999998775 34555555555 444444443322111224555554333332 2 3 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec-ccc-------------------------------- Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN-IKF-------------------------------- 298 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~-~~~-------------------------------- 298 (343) .+.||+|++..+++++.+... +++++.++|+| ||.+++... ... T Consensus 119 ~~~~D~I~~~~~l~~~~~~~~--~l~~~~~~L~~-gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (239) T PRK00216 119 DNSFDAVTIAFGLRNVPDIDK--ALREMYRVLKP-GGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSY 195 (239) T ss_pred CCCccEEEEecccccCCCHHH--HHHHHHHhccC-CcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHH Confidence 468999999999999988665 89999999999 999876521 000 Q ss_pred -----ccCCCHHHHHHHHHhcCCcEEEeee Q 019282 299 -----CSRLGGEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 299 -----~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343) ...+..+++.+.++++||+.+.... T Consensus 196 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 225 (239) T PRK00216 196 LAESIRAFPDQEELAAMLEEAGFERVRYRN 225 (239) T ss_pred HHHHHHhCCCHHHHHHHHHhCCCceeeeee Confidence 0112367899999999999887664 No 40 >PRK04266 fibrillarin; Provisional Probab=99.39 E-value=9.8e-12 Score=113.57 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=92.2 Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC-CCCCCc Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK-FGSGVV 254 (343) Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~-~~~~~~ 254 (343) .+.++++.+|||+|||+|.++..+++..+...++++|+++.++... .+.... . .++..+.++..+... ....+. T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l--~~~a~~-~--~nv~~i~~D~~~~~~~~~l~~~ 141 (226) T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMREL--LEVAEE-R--KNIIPILADARKPERYAHVVEK 141 (226) T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHH--HHHhhh-c--CCcEEEECCCCCcchhhhcccc Confidence 4788899999999999999999999877533455555555433322 222111 1 245555554332100 112356 Q ss_pred eeEEEEccccccCCchH-HHHHHHHHHhccCCCCcEEEEEec---cccccCCC--HHHHHHHHHhcCCcEEEeeeccccc Q 019282 255 YDLIYASAVFLHMPDKL-VWVGLERLASKLRPYDGRIFVSHN---IKFCSRLG--GEECTKRLTSLGLEYIGKKTHDSLL 328 (343) Q Consensus 255 fDlIvs~~v~~hl~~~~-~~~~L~~l~r~LkP~GG~lvi~~~---~~~~~~~~--~~~l~~~L~~aGf~~v~~~~~~~l~ 328 (343) ||+|++. +.++. ...++++++++||| ||.++++.. .++..... .++..++++++||+.+....+.++. T Consensus 142 ~D~i~~d-----~~~p~~~~~~L~~~~r~LKp-GG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~ 215 (226) T PRK04266 142 VDVIYQD-----VAQPNQAEIAIDNAEFFLKD-GGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYH 215 (226) T ss_pred CCEEEEC-----CCChhHHHHHHHHHHHhcCC-CcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCc Confidence 9999853 33322 22368999999999 999999521 12211111 2334589999999999888877776 Q ss_pred cchhH Q 019282 329 FNHYE 333 (343) Q Consensus 329 ~~~~e 333 (343) .+||- T Consensus 216 ~~h~~ 220 (226) T PRK04266 216 KDHAA 220 (226) T ss_pred CCeEE Confidence 67764 No 41 >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. Probab=99.38 E-value=3e-11 Score=108.78 Aligned_cols=142 Identities=15% Similarity=0.200 Sum_probs=96.3 Q ss_pred HHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC Q 019282 172 FLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG 250 (343) Q Consensus 172 ~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~ 250 (343) .+.......++.+|||+|||+|..+..+++..+. ..++++|+++ .+...++++.. ...++.+..++..+.+ + T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~--~~~~~~~~~~~---~~~~i~~~~~d~~~~~-~- 102 (223) T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS--EMLEVAKKKSE---LPLNIEFIQADAEALP-F- 102 (223) T ss_pred HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH--HHHHHHHHHhc---cCCCceEEecchhcCC-C- Confidence 3444445567889999999999999999987754 3555555554 44443333221 1224555555433333 2 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-c------------------------------- Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-F------------------------------- 298 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-~------------------------------- 298 (343) ..++||+|++..+++|.++... +++++.+.|+| ||.+++..... . T Consensus 103 ~~~~~D~i~~~~~~~~~~~~~~--~l~~~~~~L~~-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (223) T TIGR01934 103 EDNSFDAVTIAFGLRNVTDIQK--ALREMYRVLKP-GGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYT 179 (223) T ss_pred CCCcEEEEEEeeeeCCcccHHH--HHHHHHHHcCC-CcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhH Confidence 2468999999999999988665 99999999999 99998753100 0 Q ss_pred ------ccCCCHHHHHHHHHhcCCcEEEeee Q 019282 299 ------CSRLGGEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 299 ------~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343) ...+..+++.+.|+++||+.+.... T Consensus 180 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 210 (223) T TIGR01934 180 YLPESIRAFPSQEELAAMLKEAGFEEVRYRS 210 (223) T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCccceeee Confidence 0011367899999999999876654 No 42 >PRK06202 hypothetical protein; Provisional Probab=99.38 E-value=1e-11 Score=113.59 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=90.5 Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCC--CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCce Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNP--ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343) Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~--~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343) ...++.+|||||||+|.++..+++..+. .+..++++|.++.+.+.+++.... ....+...+..++. . .+++| T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~~~~~~l~-~-~~~~f 130 (232) T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----PGVTFRQAVSDELV-A-EGERF 130 (232) T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----CCCeEEEEeccccc-c-cCCCc Confidence 3356789999999999999988875432 224677777777777766653221 12222222222333 2 35789 Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec------------------ccc---------ccCCCHHHHH Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN------------------IKF---------CSRLGGEECT 308 (343) Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~------------------~~~---------~~~~~~~~l~ 308 (343) |+|+++.++||+++++...+|++++++++ |+.++.... ..+ ...++++++. T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~ 208 (232) T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELA 208 (232) T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHH Confidence 99999999999998877779999999998 455443210 000 1233488999 Q ss_pred HHHHhcCCcEEEee Q 019282 309 KRLTSLGLEYIGKK 322 (343) Q Consensus 309 ~~L~~aGf~~v~~~ 322 (343) +.+++ ||++.... T Consensus 209 ~ll~~-Gf~~~~~~ 221 (232) T PRK06202 209 ALAPQ-GWRVERQW 221 (232) T ss_pred HHhhC-CCeEEecc Confidence 99998 99876543 No 43 >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional Probab=99.37 E-value=1.2e-11 Score=112.96 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=97.0 Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT 247 (343) Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~ 247 (343) .++++.......++.+|||||||+|.++..+++. +..++++|.+..+.+.++++.. .+. .+.+...+..++. T Consensus 36 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~ 108 (233) T PRK05134 36 RLNYIREHAGGLFGKRVLDVGCGGGILSESMARL----GADVTGIDASEENIEVARLHALESGL---KIDYRQTTAEELA 108 (233) T ss_pred HHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc----CCeEEEEcCCHHHHHHHHHHHHHcCC---ceEEEecCHHHhh Confidence 4556665566667889999999999999988873 2335555555555554443322 122 2334433222222 Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------------cccCC Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------------FCSRL 302 (343) Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------------~~~~~ 302 (343) .. ..+.||+|++..+++|+++... +|+.+.+.|+| ||.+++..... +...+ T Consensus 109 ~~-~~~~fD~Ii~~~~l~~~~~~~~--~l~~~~~~L~~-gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (233) T PRK05134 109 AE-HPGQFDVVTCMEMLEHVPDPAS--FVRACAKLVKP-GGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFI 184 (233) T ss_pred hh-cCCCccEEEEhhHhhccCCHHH--HHHHHHHHcCC-CcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcC Confidence 11 3478999999999999988765 89999999999 99998873210 01112 Q ss_pred CHHHHHHHHHhcCCcEEEee Q 019282 303 GGEECTKRLTSLGLEYIGKK 322 (343) Q Consensus 303 ~~~~l~~~L~~aGf~~v~~~ 322 (343) .++++.++++++||+++... T Consensus 185 ~~~~~~~~l~~~Gf~~v~~~ 204 (233) T PRK05134 185 KPSELAAWLRQAGLEVQDIT 204 (233) T ss_pred CHHHHHHHHHHCCCeEeeee Confidence 37889999999999988764 No 44 >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A. Probab=99.37 E-value=1.3e-12 Score=103.90 Aligned_cols=98 Identities=28% Similarity=0.398 Sum_probs=67.1 Q ss_pred EEEEcCCcCHHHHHHHHHcCCC-ceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEc- Q 019282 185 VLEIGCGTLRVGVHFIRYLNPE-NFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS- 261 (343) Q Consensus 185 VLDIGCGtG~~a~~la~~~~~~-~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~- 261 (343) |||+|||+|+.+..+++.++.. ...++++|.++.+...+++... .+. .+.++.++..+++ . .+++||+|+++ T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~---~~~~~~~D~~~l~-~-~~~~~D~v~~~~ 75 (101) T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP---KVRFVQADARDLP-F-SDGKFDLVVCSG 75 (101) T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT---TSEEEESCTTCHH-H-HSSSEEEEEE-T T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC---ceEEEECCHhHCc-c-cCCCeeEEEEcC Confidence 7999999999999999987211 1344445555555555554433 222 5667776554443 1 36799999995 Q ss_pred cccccCCchHHHHHHHHHHhccCCCCc Q 019282 262 AVFLHMPDKLVWVGLERLASKLRPYDG 288 (343) Q Consensus 262 ~v~~hl~~~~~~~~L~~l~r~LkP~GG 288 (343) .+++|+.+++...+++++.++|+| || T Consensus 76 ~~~~~~~~~~~~~ll~~~~~~l~p-gG 101 (101) T PF13649_consen 76 LSLHHLSPEELEALLRRIARLLRP-GG 101 (101) T ss_dssp TGGGGSSHHHHHHHHHHHHHTEEE-EE T ss_pred CccCCCCHHHHHHHHHHHHHHhCC-CC Confidence 459999999999999999999999 87 No 45 >TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. Probab=99.36 E-value=8.3e-12 Score=110.30 Aligned_cols=126 Identities=22% Similarity=0.208 Sum_probs=83.5 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343) ++.+|||||||+|..+..++...+... ++++|.+..+.+.+++..+ .+. . ++.++.++..++ ...++||+|+ T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~--V~~iD~s~~~~~~a~~~~~~~~~-~-~i~~i~~d~~~~---~~~~~fD~I~ 114 (181) T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELK--LTLLESNHKKVAFLREVKAELGL-N-NVEIVNGRAEDF---QHEEQFDVIT 114 (181) T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCe--EEEEeCcHHHHHHHHHHHHHhCC-C-CeEEEecchhhc---cccCCccEEE Confidence 378999999999999999887655444 5555555555554444332 233 2 466776644443 2357899999 Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHH---HHhcCCcEEEeeecc Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKR---LTSLGLEYIGKKTHD 325 (343) Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~---L~~aGf~~v~~~~~~ 325 (343) +.. ++++ ..+++.++++|+| ||.+++.++.. ...++... +...||+.+++...+ T Consensus 115 s~~-~~~~-----~~~~~~~~~~Lkp-gG~lvi~~~~~-----~~~~~~~~~e~~~~~~~~~~~~~~~~ 171 (181) T TIGR00138 115 SRA-LASL-----NVLLELTLNLLKV-GGYFLAYKGKK-----YLDEIEEAKRKCQVLGVEPLEVPPLT 171 (181) T ss_pred ehh-hhCH-----HHHHHHHHHhcCC-CCEEEEEcCCC-----cHHHHHHHHHhhhhcCceEeeccccC Confidence 976 4332 2378889999999 99999875322 23444444 444899999877643 No 46 >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed Probab=99.35 E-value=2.7e-11 Score=107.55 Aligned_cols=134 Identities=22% Similarity=0.221 Sum_probs=90.4 Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343) Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343) +++.+.....++++.+|||||||+|..+..++...+.. +++++|.+..+.+.+++..+..... ++.+..++..++. T Consensus 33 ~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~--~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~- 108 (187) T PRK00107 33 ILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPEL--KVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFG- 108 (187) T ss_pred HHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCC--eEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCC- Confidence 33444433445668899999999999999998866544 4555566666666555544322222 3666666444443 Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343) Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343) ..++||+|++... .+ ...+++.++++||| ||++++.... ....++.+..+..|+.+.. T Consensus 109 --~~~~fDlV~~~~~----~~--~~~~l~~~~~~Lkp-GG~lv~~~~~-----~~~~~l~~~~~~~~~~~~~ 166 (187) T PRK00107 109 --QEEKFDVVTSRAV----AS--LSDLVELCLPLLKP-GGRFLALKGR-----DPEEEIAELPKALGGKVEE 166 (187) T ss_pred --CCCCccEEEEccc----cC--HHHHHHHHHHhcCC-CeEEEEEeCC-----ChHHHHHHHHHhcCceEee Confidence 3568999999752 22 23489999999999 9999987532 2366777778888987544 No 47 >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated Probab=99.35 E-value=2.2e-11 Score=107.72 Aligned_cols=139 Identities=16% Similarity=0.143 Sum_probs=93.4 Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343) Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343) ..+.+.+...+.+.++.+|||||||+|.++..+++..+...++++|+++.....+ +++.. .+. . ++.++.++. T Consensus 17 ~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a--~~n~~~~~~-~-~i~~~~~d~-- 90 (187) T PRK08287 17 EEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLI--KENRQRFGC-G-NIDIIPGEA-- 90 (187) T ss_pred HHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHH--HHHHHHhCC-C-CeEEEecCc-- Confidence 3455555566778888999999999999999999877655666666666544444 33322 222 2 355554422 Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343) .. ...+.||+|++....+++ ..+++.+++.|+| ||++++... .....+++.+.++++||+.++... T Consensus 91 -~~-~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~Lk~-gG~lv~~~~----~~~~~~~~~~~l~~~g~~~~~~~~ 156 (187) T PRK08287 91 -PI-ELPGKADAIFIGGSGGNL-----TAIIDWSLAHLHP-GGRLVLTFI----LLENLHSALAHLEKCGVSELDCVQ 156 (187) T ss_pred -hh-hcCcCCCEEEECCCccCH-----HHHHHHHHHhcCC-CeEEEEEEe----cHhhHHHHHHHHHHCCCCcceEEE Confidence 21 124589999998665433 3478999999999 999988642 111256778899999998766543 No 48 >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated Probab=99.35 E-value=3.1e-11 Score=109.75 Aligned_cols=136 Identities=16% Similarity=0.126 Sum_probs=89.4 Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343) Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343) ..++.+|||||||+|.++..+++.. .. ++++|.+..+...+++.........++.+..+ +++. .+++||+| T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~--v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~--~~~~fD~v 131 (230) T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG--AK--VVASDISPQMVEEARERAPEAGLAGNITFEVG---DLES--LLGRFDTV 131 (230) T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC--CE--EEEEECCHHHHHHHHHHHHhcCCccCcEEEEc---Cchh--ccCCcCEE Confidence 4667899999999999999998742 23 44455555555555543322111124555554 3332 24689999 Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------cccCCCHHHHHHHHHhcCCcEE Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------FCSRLGGEECTKRLTSLGLEYI 319 (343) Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------~~~~~~~~~l~~~L~~aGf~~v 319 (343) ++..+++|++++....+++++.+.+++ ++.+.+..... ....+..+++.+.++++||+++ T Consensus 132 ~~~~~l~~~~~~~~~~~l~~l~~~~~~-~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 210 (230) T PRK07580 132 VCLDVLIHYPQEDAARMLAHLASLTRG-SLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVV 210 (230) T ss_pred EEcchhhcCCHHHHHHHHHHHHhhcCC-eEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceE Confidence 999999999888877899999998765 44433321000 0111237889999999999988 Q ss_pred Eeeec Q 019282 320 GKKTH 324 (343) Q Consensus 320 ~~~~~ 324 (343) ..... T Consensus 211 ~~~~~ 215 (230) T PRK07580 211 RTERI 215 (230) T ss_pred eeeec Confidence 87653 No 49 >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. Probab=99.35 E-value=4.2e-11 Score=108.50 Aligned_cols=136 Identities=14% Similarity=0.118 Sum_probs=91.1 Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCC-------------CCCCcEEEecccC Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGL-------------LHKRPIIVRGEDM 244 (343) Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~-------------~~~~~~~~~~~~~ 244 (343) .++++.+|||+|||.|+.+..|++ .++.|+++|.++...+.+.+. .+. ....+.+..++.. T Consensus 31 ~~~~~~rvLd~GCG~G~da~~LA~----~G~~V~gvD~S~~Ai~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~D~~ 104 (213) T TIGR03840 31 GLPAGARVFVPLCGKSLDLAWLAE----QGHRVLGVELSEIAVEQFFAE--NGLTPTVTQQGEFTRYRAGNIEIFCGDFF 104 (213) T ss_pred CCCCCCeEEEeCCCchhHHHHHHh----CCCeEEEEeCCHHHHHHHHHH--cCCCcceeccccceeeecCceEEEEccCC Confidence 345678999999999999999998 677777777777766653221 111 1124555555333 Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEE-Eecccc----c--cCCCHHHHHHHHHhcCCc Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFV-SHNIKF----C--SRLGGEECTKRLTSLGLE 317 (343) Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi-~~~~~~----~--~~~~~~~l~~~L~~aGf~ 317 (343) ++.. ...+.||.|+-..+++|++...+..+++.+.++||| ||++++ +...+. . ..++++++.+.+.. +|+ T Consensus 105 ~~~~-~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp-gG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~-~~~ 181 (213) T TIGR03840 105 ALTA-ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP-GARQLLITLDYDQSEMAGPPFSVSPAEVEALYGG-HYE 181 (213) T ss_pred CCCc-ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC-CCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcC-Cce Confidence 3321 123579999999999999998888899999999999 997544 332111 1 12348888887753 455 Q ss_pred EEEee Q 019282 318 YIGKK 322 (343) Q Consensus 318 ~v~~~ 322 (343) +.... T Consensus 182 i~~~~ 186 (213) T TIGR03840 182 IELLE 186 (213) T ss_pred EEEEe Confidence 44433 No 50 >TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. Probab=99.34 E-value=3.8e-11 Score=109.04 Aligned_cols=130 Identities=22% Similarity=0.241 Sum_probs=88.9 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343) .++.+|||||||+|.++..+++..+...++++|+++ .+...+++... . ++.++.++..+.+ + .+++||+|+ T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~----~-~~~~~~~d~~~~~-~-~~~~fD~vi 103 (240) T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISA--GMLAQAKTKLS----E-NVQFICGDAEKLP-L-EDSSFDLIV 103 (240) T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChH--HHHHHHHHhcC----C-CCeEEecchhhCC-C-CCCceeEEE Confidence 345789999999999999999877655555555554 55444443221 1 3445554333332 2 357899999 Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------------c-ccCCCHHHHHHHHHhcCCcEEEee Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------------F-CSRLGGEECTKRLTSLGLEYIGKK 322 (343) Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------------~-~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343) +..++||+.+... ++.++.++|+| ||.+++..... . ......+++.+++.++ |+.+... T Consensus 104 ~~~~l~~~~~~~~--~l~~~~~~L~~-~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240) T TIGR02072 104 SNLALQWCDDLSQ--ALSELARVLKP-GGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLE 175 (240) T ss_pred EhhhhhhccCHHH--HHHHHHHHcCC-CcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEE Confidence 9999999988765 99999999999 99999863111 0 1112377888888887 8765433 No 51 >PLN02585 magnesium protoporphyrin IX methyltransferase Probab=99.34 E-value=2.4e-11 Score=116.14 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=86.8 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCC----CCCCCcEEEecccCCcCCCCCCCcee Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQG----LLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~----~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343) ++.+|||||||+|.++..+++. +..++++|.++.|...++++.... .....+.+... |+.+. ++.|| T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~----g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~---Dl~~l--~~~fD 214 (315) T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE----GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN---DLESL--SGKYD 214 (315) T ss_pred CCCEEEEecCCCCHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc---chhhc--CCCcC Confidence 5779999999999999999983 445666666666666655543221 11123344433 44433 47899 Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------------cc------c--CCCHHHHHHHHHhcCC Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------------FC------S--RLGGEECTKRLTSLGL 316 (343) Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------------~~------~--~~~~~~l~~~L~~aGf 316 (343) +|+|..+++|+++......++.+.+ +.+ ||.++...... +. . .+.++++.++++++|| T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~-g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf 292 (315) T PLN02585 215 TVTCLDVLIHYPQDKADGMIAHLAS-LAE-KRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGW 292 (315) T ss_pred EEEEcCEEEecCHHHHHHHHHHHHh-hcC-CEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCC Confidence 9999999999988766667777775 456 55544321100 00 0 1248999999999999 Q ss_pred cEEEeee Q 019282 317 EYIGKKT 323 (343) Q Consensus 317 ~~v~~~~ 323 (343) +++..+. T Consensus 293 ~v~~~~~ 299 (315) T PLN02585 293 KVARREM 299 (315) T ss_pred EEEEEEE Confidence 9876553 No 52 >PLN02336 phosphoethanolamine N-methyltransferase Probab=99.33 E-value=1.6e-11 Score=123.85 Aligned_cols=143 Identities=17% Similarity=0.098 Sum_probs=96.5 Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC-CC Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT-KF 249 (343) Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~-~~ 249 (343) ..+...+...++.+|||||||+|.++..+++.. . .++++|.++.+...+++.. +. ..++.++.++..+.. .+ T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~--~--~v~giD~s~~~l~~a~~~~--~~-~~~i~~~~~d~~~~~~~~ 99 (475) T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA--G--QVIALDFIESVIKKNESIN--GH-YKNVKFMCADVTSPDLNI 99 (475) T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC--C--EEEEEeCCHHHHHHHHHHh--cc-CCceEEEEecccccccCC Confidence 445555555667899999999999999999853 2 3555555556655443321 11 124455554332111 12 Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----c-----ccCC-CHHHHHHHHHhcCCcE Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----F-----CSRL-GGEECTKRLTSLGLEY 318 (343) Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----~-----~~~~-~~~~l~~~L~~aGf~~ 318 (343) ++++||+|++..+++|++++....++++++++||| ||++++.+..- . ..++ ....+.+.+.++||.. T Consensus 100 -~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~-gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 177 (475) T PLN02336 100 -SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKV-GGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRD 177 (475) T ss_pred -CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC-CeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheecc Confidence 35789999999999999987777899999999999 99998863211 0 0111 2778889999999986 Q ss_pred EEee Q 019282 319 IGKK 322 (343) Q Consensus 319 v~~~ 322 (343) .... T Consensus 178 ~~~~ 181 (475) T PLN02336 178 EDGN 181 (475) T ss_pred CCCC Confidence 5433 No 53 >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. Probab=99.33 E-value=2.3e-11 Score=110.16 Aligned_cols=136 Identities=21% Similarity=0.179 Sum_probs=89.7 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343) ++.+|||+|||+|.++..+++.. .. ++++|.+..+...+++....... ..+.+..++..++... ..++||+|++ T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~--v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~-~~~~~D~i~~ 118 (224) T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--AN--VTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEK-GAKSFDVVTC 118 (224) T ss_pred CCCeEEEECCCCCHHHHHHHhcC--Ce--EEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcC-CCCCccEEEe Confidence 47799999999999999887732 23 44455554554444432221111 1234444322222211 2368999999 Q ss_pred ccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------------cccCCCHHHHHHHHHhcC Q 019282 261 SAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------------FCSRLGGEECTKRLTSLG 315 (343) Q Consensus 261 ~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------------~~~~~~~~~l~~~L~~aG 315 (343) ..+++|+.+... +++.+.++|+| ||.+++..... +...+.++++.++++++| T Consensus 119 ~~~l~~~~~~~~--~l~~~~~~L~~-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 195 (224) T TIGR01983 119 MEVLEHVPDPQA--FIRACAQLLKP-GGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAG 195 (224) T ss_pred hhHHHhCCCHHH--HHHHHHHhcCC-CcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcC Confidence 999999988765 99999999999 99998763110 001123678999999999 Q ss_pred CcEEEeeecc Q 019282 316 LEYIGKKTHD 325 (343) Q Consensus 316 f~~v~~~~~~ 325 (343) |++++..... T Consensus 196 ~~i~~~~~~~ 205 (224) T TIGR01983 196 LRVKDVKGLV 205 (224) T ss_pred CeeeeeeeEE Confidence 9998876543 No 54 >KOG4300 consensus Predicted methyltransferase [General function prediction only] Probab=99.32 E-value=7.3e-12 Score=110.37 Aligned_cols=149 Identities=18% Similarity=0.174 Sum_probs=102.7 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcE-EEeccc Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPI-IVRGED 243 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~-~~~~~~ 243 (343) -++++.-+...+.......|||||||||..-. +++ .....++.+|+++.|..++.+..+++.+. .+. ++.+.. T Consensus 61 krelFs~i~~~~gk~~K~~vLEvgcGtG~Nfk----fy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~g 135 (252) T KOG4300|consen 61 KRELFSGIYYFLGKSGKGDVLEVGCGTGANFK----FYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADG 135 (252) T ss_pred HHHHHhhhHHHhcccCccceEEecccCCCCcc----cccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeech Confidence 34455555544444445578999999998844 333 23557888888888888776655444333 333 677767 Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE-ecccc-----------------ccCCC-- Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS-HNIKF-----------------CSRLG-- 303 (343) Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~-~~~~~-----------------~~~~~-- 303 (343) ++++++ .+++||.|++..++..+.++.. .|+++.|+|+| ||++++. |...- ....| T Consensus 136 e~l~~l-~d~s~DtVV~TlvLCSve~~~k--~L~e~~rlLRp-gG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ 211 (252) T KOG4300|consen 136 ENLPQL-ADGSYDTVVCTLVLCSVEDPVK--QLNEVRRLLRP-GGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCV 211 (252) T ss_pred hcCccc-ccCCeeeEEEEEEEeccCCHHH--HHHHHHHhcCC-CcEEEEEecccccchHHHHHHHHHhchhhheeccceE Confidence 777766 5889999999999998888876 99999999999 9998765 21110 11111 Q ss_pred -HHHHHHHHHhcCCcEEEeee Q 019282 304 -GEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 304 -~~~l~~~L~~aGf~~v~~~~ 323 (343) ..+..+.|+++.|+.+.... T Consensus 212 ltrd~~e~Leda~f~~~~~kr 232 (252) T KOG4300|consen 212 LTRDTGELLEDAEFSIDSCKR 232 (252) T ss_pred EehhHHHHhhhcccccchhhc Confidence 45566788899998776544 No 55 >KOG2361 consensus Predicted methyltransferase [General function prediction only] Probab=99.32 E-value=9.8e-12 Score=112.04 Aligned_cols=152 Identities=17% Similarity=0.230 Sum_probs=106.0 Q ss_pred eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCc-EEE-ecccCCcCCCCCCCceeEEEEc Q 019282 184 HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRP-IIV-RGEDMDFTKFGSGVVYDLIYAS 261 (343) Q Consensus 184 rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~-~~~-~~~~~dl~~~~~~~~fDlIvs~ 261 (343) +|||||||.|.....+++..+..++.+...|-++..+..-++... ....+. .++ +....++......+++|.|+++ T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~--~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264) T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSG--YDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264) T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccc--cchhhhcccceeccchhccCCCCcCccceEEEE Confidence 899999999999999999887766777777777766665554332 111121 111 1111122222356899999999 Q ss_pred cccccCCchHHHHHHHHHHhccCCCCcEEEEEe-----------------cccccc--------CCCHHHHHHHHHhcCC Q 019282 262 AVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH-----------------NIKFCS--------RLGGEECTKRLTSLGL 316 (343) Q Consensus 262 ~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~-----------------~~~~~~--------~~~~~~l~~~L~~aGf 316 (343) +++..+++...+.++++++++||| ||.+++.+ ...++. .++.+++.+++.++|| T Consensus 152 FvLSAi~pek~~~a~~nl~~llKP-GG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf 230 (264) T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKP-GGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGF 230 (264) T ss_pred EEEeccChHHHHHHHHHHHHHhCC-CcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhccc Confidence 999999999999999999999999 99999872 111111 1238999999999999 Q ss_pred cEEEeeeccccccch------hHHhhhh Q 019282 317 EYIGKKTHDSLLFNH------YEIWFEF 338 (343) Q Consensus 317 ~~v~~~~~~~l~~~~------~e~w~~~ 338 (343) ..++......+.-++ |-.|++. T Consensus 231 ~~~~~~~~~rl~vNr~k~lkm~Rvwvq~ 258 (264) T KOG2361|consen 231 EEVQLEVDCRLLVNRKKQLKMYRVWVQA 258 (264) T ss_pred chhcccceeeeeeehhccCccceEEEEE Confidence 988766544444333 5566654 No 56 >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. Probab=99.32 E-value=1.7e-11 Score=108.20 Aligned_cols=127 Identities=23% Similarity=0.323 Sum_probs=85.6 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCcee Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343) ++-..-.++||+|||.|.++..|+... ..+.++|+++..+..+ +++.. +. .++.+... +++++.+++.|| T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~A--r~Rl~-~~--~~V~~~~~---dvp~~~P~~~FD 108 (201) T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARA--RERLA-GL--PHVEWIQA---DVPEFWPEGRFD 108 (201) T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHH--HHHTT-T---SSEEEEES----TTT---SS-EE T ss_pred cCccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHH--HHhcC-CC--CCeEEEEC---cCCCCCCCCCee Confidence 454555789999999999999999865 4567777777666555 33222 22 25666654 667666789999 Q ss_pred EEEEccccccCCc-hHHHHHHHHHHhccCCCCcEEEEEeccc-cccCC----CHHHHHHHHHhc Q 019282 257 LIYASAVFLHMPD-KLVWVGLERLASKLRPYDGRIFVSHNIK-FCSRL----GGEECTKRLTSL 314 (343) Q Consensus 257 lIvs~~v~~hl~~-~~~~~~L~~l~r~LkP~GG~lvi~~~~~-~~~~~----~~~~l~~~L~~a 314 (343) +|+++.+++++.+ ++...++.++.+.|+| ||.+++.+..+ .+..+ +.+.+.++|.+. T Consensus 109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~p-gG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~ 171 (201) T PF05401_consen 109 LIVLSEVLYYLDDAEDLRAALDRLVAALAP-GGHLVFGHARDANCRRWGHAAGAETVLEMLQEH 171 (201) T ss_dssp EEEEES-GGGSSSHHHHHHHHHHHHHTEEE-EEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH T ss_pred EEEEehHhHcCCCHHHHHHHHHHHHHHhCC-CCEEEEEEecCCcccccCcccchHHHHHHHHHH Confidence 9999999999976 5677899999999999 99999986433 33333 477777777654 No 57 >smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. Probab=99.32 E-value=1.9e-11 Score=114.32 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=80.5 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCH----HHHHHHHHcCC---CceEEEEcChhHHHHHHHHhccc-----CCCC- Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLR----VGVHFIRYLNP---ENFHCLERDELSLMAAFRYELPS-----QGLL- 232 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~----~a~~la~~~~~---~~~~vvdid~s~~~~a~a~~~~~-----~~~~- 232 (343) .+.+...+.+.....++.+|||+|||||. ++..+++..+. .++.++++|.+..+.+.|++..- .+.+ T Consensus 84 ~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~ 163 (264) T smart00138 84 EEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPK 163 (264) T ss_pred HHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCH Confidence 33444444433344556899999999997 45556665432 23445555555555555443210 0110 Q ss_pred --------------------CCCcEEEecccCCcCCCC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEE Q 019282 233 --------------------HKRPIIVRGEDMDFTKFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIF 291 (343) Q Consensus 233 --------------------~~~~~~~~~~~~dl~~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lv 291 (343) ..++.+... |+.+.. +.++||+|+|.++++|++++....++++++++|+| ||+++ T Consensus 164 ~~~~~yf~~~~~~~~v~~~ir~~V~F~~~---dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p-GG~L~ 239 (264) T smart00138 164 ALLARYFSRVEDKYRVKPELKERVRFAKH---NLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP-GGYLF 239 (264) T ss_pred HHHhhhEEeCCCeEEEChHHhCcCEEeec---cCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC-CeEEE Confidence 013445544 333332 36789999999999999888777899999999999 99999 Q ss_pred EEec Q 019282 292 VSHN 295 (343) Q Consensus 292 i~~~ 295 (343) +.+. T Consensus 240 lg~~ 243 (264) T smart00138 240 LGHS 243 (264) T ss_pred EECc Confidence 9864 No 58 >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. Probab=99.30 E-value=3.3e-11 Score=98.35 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=77.1 Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCc Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDF 246 (343) Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl 246 (343) .+...+...+.+.++.+|||+|||+|.++..+++..+...++++|+++. +.+.+++..+ .+. .++.++.++..+. T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 81 (124) T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPE--ALRLIERNARRFGV--SNIVIVEGDAPEA 81 (124) T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHH--HHHHHHHHHHHhCC--CceEEEecccccc Confidence 4455566667777788999999999999999998776555555555554 4444343322 222 2445554433322 Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) ... ..++||.|++....++ ...+++.+++.||| ||.+++.. T Consensus 82 ~~~-~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~-gG~li~~~ 122 (124) T TIGR02469 82 LED-SLPEPDRVFIGGSGGL-----LQEILEAIWRRLRP-GGRIVLNA 122 (124) T ss_pred Chh-hcCCCCEEEECCcchh-----HHHHHHHHHHHcCC-CCEEEEEe Confidence 211 2358999999765533 23589999999999 99998863 No 59 >TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. Probab=99.30 E-value=6.3e-11 Score=104.14 Aligned_cols=132 Identities=20% Similarity=0.164 Sum_probs=88.3 Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343) Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343) ...++.+|||+|||+|.++..+++..+ +++++|.++.+.+.++++..... ..+.++.+ |..+. ..++||+ T Consensus 16 ~~~~~~~vLdlG~G~G~~~~~l~~~~~----~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~---d~~~~-~~~~fD~ 85 (179) T TIGR00537 16 RELKPDDVLEIGAGTGLVAIRLKGKGK----CILTTDINPFAVKELRENAKLNN--VGLDVVMT---DLFKG-VRGKFDV 85 (179) T ss_pred HhcCCCeEEEeCCChhHHHHHHHhcCC----EEEEEECCHHHHHHHHHHHHHcC--CceEEEEc---ccccc-cCCcccE Confidence 344567999999999999999988432 45555555555555444332211 13444544 33222 2458999 Q ss_pred EEEccccccCCch-------------------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcE Q 019282 258 IYASAVFLHMPDK-------------------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEY 318 (343) Q Consensus 258 Ivs~~v~~hl~~~-------------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~ 318 (343) |+++..+++.++. ....+++++.++||| ||.+++.... ..+..++.+.|++.||+. T Consensus 86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~-gG~~~~~~~~----~~~~~~~~~~l~~~gf~~ 160 (179) T TIGR00537 86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE-GGRVQLIQSS----LNGEPDTFDKLDERGFRY 160 (179) T ss_pred EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC-CCEEEEEEec----cCChHHHHHHHHhCCCeE Confidence 9999888766532 134579999999999 9999887531 123678889999999988 Q ss_pred EEeeec Q 019282 319 IGKKTH 324 (343) Q Consensus 319 v~~~~~ 324 (343) ...... T Consensus 161 ~~~~~~ 166 (179) T TIGR00537 161 EIVAER 166 (179) T ss_pred EEEEEe Confidence 765543 No 60 >TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. Probab=99.30 E-value=3.4e-11 Score=107.25 Aligned_cols=143 Identities=14% Similarity=0.119 Sum_probs=92.0 Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC-cCCCCCCCceeE Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD-FTKFGSGVVYDL 257 (343) Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d-l~~~~~~~~fDl 257 (343) ++++.+|||||||+|.++..+++.. +..++++|.++.+.+.+++ . .+.++.++..+ +..+ .+++||+ T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~---~~~~~giD~s~~~i~~a~~---~-----~~~~~~~d~~~~l~~~-~~~sfD~ 78 (194) T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEK---QVRGYGIEIDQDGVLACVA---R-----GVNVIQGDLDEGLEAF-PDKSFDY 78 (194) T ss_pred cCCCCEEEEeCCCCCHHHHHHHhcc---CCcEEEEeCCHHHHHHHHH---c-----CCeEEEEEhhhccccc-CCCCcCE Confidence 3567899999999999998887643 2234555555555554432 1 12334333222 2222 3578999 Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE-------------e-ccc-------------cccCCCHHHHHHH Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS-------------H-NIK-------------FCSRLGGEECTKR 310 (343) Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~-------------~-~~~-------------~~~~~~~~~l~~~ 310 (343) |+++.+++|+++... +++++.+.+++ + .+.+. . ... ....+..+++.++ T Consensus 79 Vi~~~~l~~~~d~~~--~l~e~~r~~~~-~-ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 154 (194) T TIGR02081 79 VILSQTLQATRNPEE--ILDEMLRVGRH-A-IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDL 154 (194) T ss_pred EEEhhHhHcCcCHHH--HHHHHHHhCCe-E-EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHH Confidence 999999999988766 88998887776 3 22210 0 000 0112348999999 Q ss_pred HHhcCCcEEEeeeccccccchhH-Hhhh Q 019282 311 LTSLGLEYIGKKTHDSLLFNHYE-IWFE 337 (343) Q Consensus 311 L~~aGf~~v~~~~~~~l~~~~~e-~w~~ 337 (343) ++++||+++.....+....+.-| .||- T Consensus 155 l~~~Gf~v~~~~~~~~~~~~~~~~~~~~ 182 (194) T TIGR02081 155 CGELNLRILDRAAFDVDGRGGREVRWFP 182 (194) T ss_pred HHHCCCEEEEEEEeccccccccccccCc Confidence 99999999988876665555544 4554 No 61 >PRK13255 thiopurine S-methyltransferase; Reviewed Probab=99.28 E-value=7.4e-11 Score=107.26 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=91.9 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCC-------------CCCCcEEEeccc Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGL-------------LHKRPIIVRGED 243 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~-------------~~~~~~~~~~~~ 243 (343) +.++++.+|||+|||.|+.+..|++ .++.|+++|.++...+.+.. +.++ ....+.+..++. T Consensus 33 ~~~~~~~rvL~~gCG~G~da~~LA~----~G~~V~avD~s~~Ai~~~~~--~~~l~~~~~~~~~~~~~~~~~v~~~~~D~ 106 (218) T PRK13255 33 LALPAGSRVLVPLCGKSLDMLWLAE----QGHEVLGVELSELAVEQFFA--ENGLTPQTRQSGEFEHYQAGEITIYCGDF 106 (218) T ss_pred hCCCCCCeEEEeCCCChHhHHHHHh----CCCeEEEEccCHHHHHHHHH--HcCCCccccccccccccccCceEEEECcc Confidence 3456678999999999999999998 56777777777766654321 1111 122455555544 Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEE-EEecc--cc--c--cCCCHHHHHHHHHhcCC Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIF-VSHNI--KF--C--SRLGGEECTKRLTSLGL 316 (343) Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lv-i~~~~--~~--~--~~~~~~~l~~~L~~aGf 316 (343) .++... ..+.||.|+-..+++|++......+++.+.++|+| ||+++ +++.. +. . ..++++++.+.+.. +| T Consensus 107 ~~l~~~-~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p-gG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~-~~ 183 (218) T PRK13255 107 FALTAA-DLADVDAVYDRAALIALPEEMRERYVQQLAALLPA-GCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAG-CF 183 (218) T ss_pred cCCCcc-cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC-CCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcC-Cc Confidence 433211 23589999999999999999888999999999999 99744 33211 11 1 12348899888853 25 Q ss_pred cEEEee Q 019282 317 EYIGKK 322 (343) Q Consensus 317 ~~v~~~ 322 (343) ++.... T Consensus 184 ~i~~~~ 189 (218) T PRK13255 184 EIELLE 189 (218) T ss_pred eEEEee Confidence 555433 No 62 >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional Probab=99.28 E-value=4.4e-11 Score=107.63 Aligned_cols=115 Identities=14% Similarity=0.212 Sum_probs=77.9 Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343) Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343) ..+.+.+.+.+.+.++.+|||||||+|..+..+++.++..+ +++++|.++.+.+.++++.. .+. .+++.+..++..+ T Consensus 58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g-~V~~iD~~~~~~~~a~~~l~~~~~-~~~v~~~~~d~~~ 135 (205) T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRG-KVYTVEIVKELAIYAAQNIERLGY-WGVVEVYHGDGKR 135 (205) T ss_pred HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEECCccc Confidence 34566677777888899999999999999999988764222 35555555555555544332 333 2245566553332 Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) . +...++||+|++...+++++ +++.+.|+| ||++++.. T Consensus 136 ~--~~~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~-gG~lvi~~ 173 (205) T PRK13944 136 G--LEKHAPFDAIIVTAAASTIP--------SALVRQLKD-GGVLVIPV 173 (205) T ss_pred C--CccCCCccEEEEccCcchhh--------HHHHHhcCc-CcEEEEEE Confidence 2 22346899999998887765 357899999 99998864 No 63 >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed Probab=99.27 E-value=3.2e-11 Score=108.31 Aligned_cols=130 Identities=21% Similarity=0.109 Sum_probs=85.7 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc-CCcCCCCCCCceeEE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED-MDFTKFGSGVVYDLI 258 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~-~dl~~~~~~~~fDlI 258 (343) ++.+|||||||+|..+..+++..+...++++|+++.....+ ++... .+. .++.++.++. ..+.....++.||+| T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a--~~~~~~~~~--~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202) T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKA--LKKIEEEGL--TNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202) T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHH--HHHHHHcCC--CCEEEEecCHHHHHHHHcCccccceE Confidence 56799999999999999999877666666666666555444 33222 222 2466666644 333221235689999 Q ss_pred EEccccccCC------chHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE Q 019282 259 YASAVFLHMP------DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343) Q Consensus 259 vs~~v~~hl~------~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343) +++....+.. ......++++++++||| ||.+++...... ...++.+.+++.|+.+. T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp-gG~l~i~~~~~~----~~~~~~~~~~~~g~~~~ 177 (202) T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKP-GGEIHFATDWEG----YAEYMLEVLSAEGGFLV 177 (202) T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCC-CCEEEEEcCCHH----HHHHHHHHHHhCccccc Confidence 9876543221 11124589999999999 999998742111 14567888999998765 No 64 >PRK05785 hypothetical protein; Provisional Probab=99.26 E-value=4.6e-11 Score=109.22 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=69.5 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343) .++.+|||||||||.++..+++.. +..++++|.++.|.+.+++.. ..+.++..+++ + .+++||+|+ T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~---~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp-~-~d~sfD~v~ 115 (226) T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF---KYYVVALDYAENMLKMNLVAD---------DKVVGSFEALP-F-RDKSFDVVM 115 (226) T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc---CCEEEEECCCHHHHHHHHhcc---------ceEEechhhCC-C-CCCCEEEEE Confidence 346799999999999999998854 245777777777777665321 12334344443 3 468999999 Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCc Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDG 288 (343) Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG 288 (343) +..+++|+++... .+++++|+||| .+ T Consensus 116 ~~~~l~~~~d~~~--~l~e~~RvLkp-~~ 141 (226) T PRK05785 116 SSFALHASDNIEK--VIAEFTRVSRK-QV 141 (226) T ss_pred ecChhhccCCHHH--HHHHHHHHhcC-ce Confidence 9999999988766 99999999999 64 No 65 >TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases Probab=99.26 E-value=1.2e-10 Score=110.98 Aligned_cols=111 Identities=11% Similarity=0.102 Sum_probs=71.7 Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCC---Cc Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSG---VV 254 (343) Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~---~~ 254 (343) ++++.+|||+|||+|..+..+++.++ ...++++|++..++..+ .+......+...+..+.++..+...+... .. T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a--~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301) T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKES--AAALAADYPQLEVHGICADFTQPLALPPEPAAGR 138 (301) T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHH--HHHHHhhCCCceEEEEEEcccchhhhhcccccCC Confidence 35678999999999999999998775 34455555555444443 33222222222344455533332212111 13 Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEE Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFV 292 (343) Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi 292 (343) ..++++...++++++.+...+|++++++|+| ||.+++ T Consensus 139 ~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~p-gG~~li 175 (301) T TIGR03438 139 RLGFFPGSTIGNFTPEEAVAFLRRIRQLLGP-GGGLLI 175 (301) T ss_pred eEEEEecccccCCCHHHHHHHHHHHHHhcCC-CCEEEE Confidence 3455556788899888888899999999999 999986 No 66 >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] Probab=99.25 E-value=3e-11 Score=107.29 Aligned_cols=107 Identities=24% Similarity=0.296 Sum_probs=85.4 Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCC Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSG 252 (343) Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~ 252 (343) |.....+.+..+|.|+|||+|..+..|++.++.+. ++|+|.|+.|.+.++++ ++ +..+..+ |+..+.+. T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~--i~GiDsS~~Mla~Aa~r----lp--~~~f~~a---Dl~~w~p~ 90 (257) T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAV--ITGIDSSPAMLAKAAQR----LP--DATFEEA---DLRTWKPE 90 (257) T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCe--EeeccCCHHHHHHHHHh----CC--CCceecc---cHhhcCCC Confidence 34456777788999999999999999999998775 55666666777766442 22 3445544 67777677 Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ...|+++++.+|+++++... +|.++...|.| ||+|.+. T Consensus 91 ~~~dllfaNAvlqWlpdH~~--ll~rL~~~L~P-gg~LAVQ 128 (257) T COG4106 91 QPTDLLFANAVLQWLPDHPE--LLPRLVSQLAP-GGVLAVQ 128 (257) T ss_pred CccchhhhhhhhhhccccHH--HHHHHHHhhCC-CceEEEE Confidence 89999999999999999766 99999999999 9999886 No 67 >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme Probab=99.24 E-value=1.6e-10 Score=104.04 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=70.5 Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343) Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343) .++++.+|||||||+|..+..+++.++...++++|+++ .+.+.+++.. . .+.+..++..+ ...+++||+ T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~--~~l~~A~~~~----~--~~~~~~~d~~~---~~~~~sfD~ 108 (204) T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINE--YAVEKAKAYL----P--NINIIQGSLFD---PFKDNFFDL 108 (204) T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH--HHHHHHHhhC----C--CCcEEEeeccC---CCCCCCEEE Confidence 35567899999999999999998866555555555555 4555444321 1 23334443233 224679999 Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) |+++.+++|+++.....++++++++++ +.++|. T Consensus 109 V~~~~vL~hl~p~~~~~~l~el~r~~~---~~v~i~ 141 (204) T TIGR03587 109 VLTKGVLIHINPDNLPTAYRELYRCSN---RYILIA 141 (204) T ss_pred EEECChhhhCCHHHHHHHHHHHHhhcC---cEEEEE Confidence 999999999987777789999999975 455554 No 68 >PRK06922 hypothetical protein; Provisional Probab=99.23 E-value=7.7e-11 Score=120.66 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=79.0 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCcee Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343) ....++.+|||||||+|.++..+++.++...++++|+++.++.. +++..... ..+..++.++..+++....+++|| T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~--Ararl~~~--g~~ie~I~gDa~dLp~~fedeSFD 489 (677) T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDT--LKKKKQNE--GRSWNVIKGDAINLSSSFEKESVD 489 (677) T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH--HHHHhhhc--CCCeEEEEcchHhCccccCCCCEE Confidence 34456889999999999999999887766666666665544444 44322211 124455556555554323467899 Q ss_pred EEEEccccccCC-----------chHHHHHHHHHHhccCCCCcEEEEEe Q 019282 257 LIYASAVFLHMP-----------DKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 257 lIvs~~v~~hl~-----------~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) +|+++.++||+. ......+|++++++||| ||.+++.+ T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP-GGrLII~D 537 (677) T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP-GGRIIIRD 537 (677) T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC-CcEEEEEe Confidence 999999998762 23456799999999999 99999975 No 69 >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. Probab=99.22 E-value=2e-11 Score=109.33 Aligned_cols=146 Identities=19% Similarity=0.276 Sum_probs=90.8 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCc-EEEecccCCcCCCCC-CCceeEEE Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRP-IIVRGEDMDFTKFGS-GVVYDLIY 259 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~-~~~~~~~~dl~~~~~-~~~fDlIv 259 (343) ..+.||.|+|.||.+..++-.. ...+..++. .......+++....+ ...+ .+.. ..++++.+ .+.||+|+ T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp--~~~Fl~~a~~~l~~~--~~~v~~~~~---~gLQ~f~P~~~~YDlIW 127 (218) T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEP--VEKFLEQAKEYLGKD--NPRVGEFYC---VGLQDFTPEEGKYDLIW 127 (218) T ss_dssp -SEEEEET-TTTHHHHHTCCCC--SEEEEEES---HHHHHHHHHHTCCG--GCCEEEEEE---S-GGG----TT-EEEEE T ss_pred cceEEecccccchhHHHHHHHh-cCEeEEecc--CHHHHHHHHHHhccc--CCCcceEEe---cCHhhccCCCCcEeEEE Confidence 4689999999999999875422 133444444 444444444322111 1122 2222 35555554 47999999 Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------c-----ccCCCHHHHHHHHHhcCCcEEEeeeccccc Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------F-----CSRLGGEECTKRLTSLGLEYIGKKTHDSLL 328 (343) Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------~-----~~~~~~~~l~~~L~~aGf~~v~~~~~~~l~ 328 (343) +.+++.|+.+.+...+|++++..|+| +|.+++-.+.. + ....+.+.+++++++||++++..+.-..+| T Consensus 128 ~QW~lghLTD~dlv~fL~RCk~~L~~-~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~fP 206 (218) T PF05891_consen 128 IQWCLGHLTDEDLVAFLKRCKQALKP-NGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGFP 206 (218) T ss_dssp EES-GGGS-HHHHHHHHHHHHHHEEE-EEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT-- T ss_pred ehHhhccCCHHHHHHHHHHHHHhCcC-CcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCCC Confidence 99999999999999999999999999 99999853211 1 111228889999999999999998888888 Q ss_pred cchhHHhh Q 019282 329 FNHYEIWF 336 (343) Q Consensus 329 ~~~~e~w~ 336 (343) ...|.+++ T Consensus 207 ~~L~pV~m 214 (218) T PF05891_consen 207 KELYPVRM 214 (218) T ss_dssp TTS-EEEE T ss_pred ccceEEEE Confidence 77776554 No 70 >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional Probab=99.22 E-value=2.7e-09 Score=99.75 Aligned_cols=142 Identities=18% Similarity=0.291 Sum_probs=92.5 Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343) Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343) .+.+.+.......++.+|||+|||+|..+..++...+...++++|+++.....+ +++.... ...++.++.+ |+. T Consensus 95 ~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a--~~n~~~~-~~~~i~~~~~---d~~ 168 (275) T PRK09328 95 ELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVA--RRNAKHG-LGARVEFLQG---DWF 168 (275) T ss_pred HHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHH--HHHHHhC-CCCcEEEEEc---ccc Confidence 355555544556677899999999999999999987666667777666555444 4332211 2224556655 322 Q ss_pred CCCCCCceeEEEEcccccc------CCc------------------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCC Q 019282 248 KFGSGVVYDLIYASAVFLH------MPD------------------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG 303 (343) Q Consensus 248 ~~~~~~~fDlIvs~~v~~h------l~~------------------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~ 303 (343) .....++||+|+++..+.- +.. .....+++++.++|+| ||.+++..+. .. T Consensus 169 ~~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~-gG~l~~e~g~-----~~ 242 (275) T PRK09328 169 EPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP-GGWLLLEIGY-----DQ 242 (275) T ss_pred CcCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc-CCEEEEEECc-----hH Confidence 2112468999999643311 111 1124578888899999 9999987532 12 Q ss_pred HHHHHHHHHhcCCcEEEe Q 019282 304 GEECTKRLTSLGLEYIGK 321 (343) Q Consensus 304 ~~~l~~~L~~aGf~~v~~ 321 (343) .+.+.+.+.+.||..+.. T Consensus 243 ~~~~~~~l~~~gf~~v~~ 260 (275) T PRK09328 243 GEAVRALLAAAGFADVET 260 (275) T ss_pred HHHHHHHHHhCCCceeEE Confidence 567888999999986655 No 71 >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... Probab=99.21 E-value=6.7e-11 Score=103.30 Aligned_cols=108 Identities=22% Similarity=0.306 Sum_probs=74.4 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343) ++.+|||+|||+|.++..++...+...++++|+++.....+.. ....+.... +.++.. |+.+...++.||+|++ T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~--n~~~n~~~~-v~~~~~---d~~~~~~~~~fD~Iv~ 104 (170) T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKR--NAERNGLEN-VEVVQS---DLFEALPDGKFDLIVS 104 (170) T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHH--HHHHTTCTT-EEEEES---STTTTCCTTCEEEEEE T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH--HHHhcCccc-cccccc---cccccccccceeEEEE Confidence 6789999999999999999998776667778777766665533 333222222 555544 3333334689999999 Q ss_pred ccccccCCc---hHHHHHHHHHHhccCCCCcEEEEEec Q 019282 261 SAVFLHMPD---KLVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 261 ~~v~~hl~~---~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) +--++.-.+ .....+++...+.||| ||.+++... T Consensus 105 NPP~~~~~~~~~~~~~~~i~~a~~~Lk~-~G~l~lv~~ 141 (170) T PF05175_consen 105 NPPFHAGGDDGLDLLRDFIEQARRYLKP-GGRLFLVIN 141 (170) T ss_dssp ---SBTTSHCHHHHHHHHHHHHHHHEEE-EEEEEEEEE T ss_pred ccchhcccccchhhHHHHHHHHHHhccC-CCEEEEEee Confidence 987754443 2456689999999999 999987653 No 72 >TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. Probab=99.21 E-value=2.2e-09 Score=101.39 Aligned_cols=129 Identities=15% Similarity=0.156 Sum_probs=83.6 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEc Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343) +.+|||+|||+|.++..++...+...++++|+++.....+ +++.......+++.++.++..+ ....++||+|+++ T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a--~~n~~~~~~~~~v~~~~~d~~~---~~~~~~fDlIvsN 189 (284) T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVA--EENAEKNQLEHRVEFIQSNLFE---PLAGQKIDIIVSN 189 (284) T ss_pred CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHH--HHHHHHcCCCCcEEEEECchhc---cCcCCCccEEEEC Confidence 3699999999999999999987766666776666555544 4333221122246666653322 2123489999996 Q ss_pred c-------------ccccCCch----------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHH-hcCCc Q 019282 262 A-------------VFLHMPDK----------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLT-SLGLE 317 (343) Q Consensus 262 ~-------------v~~hl~~~----------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~-~aGf~ 317 (343) - +..|-|.. ....++..+.+.|+| ||.+++.++.. -.+.+.+++. +.||. T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~-gG~l~~e~g~~-----q~~~~~~~~~~~~~~~ 263 (284) T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP-NGFLVCEIGNW-----QQKSLKELLRIKFTWY 263 (284) T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC-CCEEEEEECcc-----HHHHHHHHHHhcCCCc Confidence 2 22232211 234588899999999 99999987422 1456777777 46887 Q ss_pred EEEe Q 019282 318 YIGK 321 (343) Q Consensus 318 ~v~~ 321 (343) .+.. T Consensus 264 ~~~~ 267 (284) T TIGR00536 264 DVEN 267 (284) T ss_pred eeEE Confidence 6554 No 73 >PTZ00146 fibrillarin; Provisional Probab=99.21 E-value=5.8e-10 Score=104.78 Aligned_cols=143 Identities=18% Similarity=0.168 Sum_probs=88.8 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHH--HHHHHHhcccCCCCCCCcEEEecccCCcCCCC-CC Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSL--MAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG-SG 252 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~--~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~ 252 (343) +.++++.+|||+|||+|.++.++++.... ..++++|+++.+. +...++. . .++..+.++...-..+. .. T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~------r-~NI~~I~~Da~~p~~y~~~~ 200 (293) T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK------R-PNIVPIIEDARYPQKYRMLV 200 (293) T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------c-CCCEEEECCccChhhhhccc Confidence 56789999999999999999999997753 3466666664322 2222211 1 14455554322111111 23 Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccc-cCCCHHHH----HHHHHhcCCcEEEeeecccc Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFC-SRLGGEEC----TKRLTSLGLEYIGKKTHDSL 327 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~-~~~~~~~l----~~~L~~aGf~~v~~~~~~~l 327 (343) +.+|+|++.... ++ ....++.++.+.||| ||.++|....... ....++++ .++|+++||+.++.....++ T Consensus 201 ~~vDvV~~Dva~---pd-q~~il~~na~r~LKp-GG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py 275 (293) T PTZ00146 201 PMVDVIFADVAQ---PD-QARIVALNAQYFLKN-GGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPF 275 (293) T ss_pred CCCCEEEEeCCC---cc-hHHHHHHHHHHhccC-CCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCc Confidence 579999987642 33 222367789999999 9999996432221 11123433 47899999998887766555 Q ss_pred ccch Q 019282 328 LFNH 331 (343) Q Consensus 328 ~~~~ 331 (343) -..| T Consensus 276 ~~~h 279 (293) T PTZ00146 276 ERDH 279 (293) T ss_pred cCCc Confidence 5444 No 74 >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. Probab=99.21 E-value=3.6e-09 Score=99.97 Aligned_cols=133 Identities=17% Similarity=0.263 Sum_probs=87.8 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEE Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343) .++.+|||+|||+|.++..++...+...++++|+++.....+ +++.. .+. ..++.++.++..+ .+ .++.||+| T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A--~~n~~~~~~-~~~i~~~~~D~~~--~~-~~~~fD~I 193 (284) T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVA--EINIERHGL-EDRVTLIQSDLFA--AL-PGRKYDLI 193 (284) T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHH--HHHHHHcCC-CCcEEEEECchhh--cc-CCCCccEE Confidence 345799999999999999999877666666666666555444 44333 232 2356666653322 12 34579999 Q ss_pred EEcccc-------------ccCCc----------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC Q 019282 259 YASAVF-------------LHMPD----------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG 315 (343) Q Consensus 259 vs~~v~-------------~hl~~----------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG 315 (343) +++--+ +|-+. .....+++.+.++|+| ||++++..+ +..+.+.+.+.++| T Consensus 194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~-gG~l~~e~g------~~~~~v~~~~~~~~ 266 (284) T TIGR03533 194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE-NGVLVVEVG------NSMEALEEAYPDVP 266 (284) T ss_pred EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC-CCEEEEEEC------cCHHHHHHHHHhCC Confidence 997221 11111 1124578999999999 999998864 12457888899999 Q ss_pred CcEEEeeecc Q 019282 316 LEYIGKKTHD 325 (343) Q Consensus 316 f~~v~~~~~~ 325 (343) |.......+. T Consensus 267 ~~~~~~~~~~ 276 (284) T TIGR03533 267 FTWLEFENGG 276 (284) T ss_pred CceeeecCCC Confidence 9877655544 No 75 >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional Probab=99.20 E-value=4.7e-10 Score=100.31 Aligned_cols=139 Identities=15% Similarity=0.203 Sum_probs=88.5 Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343) Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343) ++.......+.+.++.+|||+|||+|.++..++...+ ...++++|+++ .+.+.++++.. .+.. .++.++.++..+ T Consensus 27 ~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~--~~~~~a~~n~~~~g~~-~~v~~~~~d~~~ 103 (198) T PRK00377 27 EIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDE--KAINLTRRNAEKFGVL-NNIVLIKGEAPE 103 (198) T ss_pred HHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHhCCC-CCeEEEEechhh Confidence 3444445567888999999999999999999887653 23455555555 44544444333 2222 355556554333 Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343) Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343) +... ..+.||.|++.... .....+++.+.+.||| ||++++... .....++..+.|++.||.... T Consensus 104 ~l~~-~~~~~D~V~~~~~~-----~~~~~~l~~~~~~Lkp-gG~lv~~~~----~~~~~~~~~~~l~~~g~~~~~ 167 (198) T PRK00377 104 ILFT-INEKFDRIFIGGGS-----EKLKEIISASWEIIKK-GGRIVIDAI----LLETVNNALSALENIGFNLEI 167 (198) T ss_pred hHhh-cCCCCCEEEECCCc-----ccHHHHHHHHHHHcCC-CcEEEEEee----cHHHHHHHHHHHHHcCCCeEE Confidence 2211 23689999985421 2234589999999999 999987431 111256778888999985443 No 76 >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed Probab=99.20 E-value=1.5e-10 Score=107.24 Aligned_cols=139 Identities=17% Similarity=0.209 Sum_probs=87.0 Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEE Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIV 239 (343) Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~ 239 (343) .+.++..+..++.+... +.++.+|||+|||+|.++..+++ .....++++|+|+.. ...++++...+.....+ T Consensus 100 tg~h~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~--l~~A~~n~~~~~~~~~~--- 171 (250) T PRK00517 100 TGTHPTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQA--VEAARENAELNGVELNV--- 171 (250) T ss_pred CCCCHHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHH--HHHHHHHHHHcCCCceE--- Confidence 34444445555555532 45788999999999999987766 333345566665544 44444433221111111 Q ss_pred ecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE Q 019282 240 RGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343) Q Consensus 240 ~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343) .+.. .+.+||+|+++...+ ....++.++.++||| ||.++++... ....+++.+.+++.||+++ T Consensus 172 -----~~~~--~~~~fD~Vvani~~~-----~~~~l~~~~~~~Lkp-gG~lilsgi~----~~~~~~v~~~l~~~Gf~~~ 234 (250) T PRK00517 172 -----YLPQ--GDLKADVIVANILAN-----PLLELAPDLARLLKP-GGRLILSGIL----EEQADEVLEAYEEAGFTLD 234 (250) T ss_pred -----EEcc--CCCCcCEEEEcCcHH-----HHHHHHHHHHHhcCC-CcEEEEEECc----HhhHHHHHHHHHHCCCEEE Confidence 1111 122799999975432 234478999999999 9999987421 1236778889999999988 Q ss_pred Eeee Q 019282 320 GKKT 323 (343) Q Consensus 320 ~~~~ 323 (343) .... T Consensus 235 ~~~~ 238 (250) T PRK00517 235 EVLE 238 (250) T ss_pred EEEE Confidence 7554 No 77 >PRK14967 putative methyltransferase; Provisional Probab=99.20 E-value=8e-10 Score=100.65 Aligned_cols=142 Identities=15% Similarity=0.199 Sum_probs=88.2 Q ss_pred HhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCC Q 019282 175 EASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGV 253 (343) Q Consensus 175 ~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~ 253 (343) ....+.++.+|||+|||+|.++..++.. +...++++|+++.. .+.++++.. .+. .+.++.+ |+.+...++ T Consensus 30 ~~~~~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~--l~~a~~n~~~~~~---~~~~~~~---d~~~~~~~~ 100 (223) T PRK14967 30 AAEGLGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRA--VRSARLNALLAGV---DVDVRRG---DWARAVEFR 100 (223) T ss_pred HhcccCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHH--HHHHHHHHHHhCC---eeEEEEC---chhhhccCC Confidence 3456778899999999999999988874 33355566665544 443343322 222 2344444 333322356 Q ss_pred ceeEEEEccccccCCc-------------------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhc Q 019282 254 VYDLIYASAVFLHMPD-------------------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSL 314 (343) Q Consensus 254 ~fDlIvs~~v~~hl~~-------------------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~a 314 (343) +||+|+++..+..... .....+++++.++||| ||++++..... ....++.+.+++. T Consensus 101 ~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~-gG~l~~~~~~~----~~~~~~~~~l~~~ 175 (223) T PRK14967 101 PFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP-GGSLLLVQSEL----SGVERTLTRLSEA 175 (223) T ss_pred CeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC-CcEEEEEEecc----cCHHHHHHHHHHC Confidence 8999999854432211 0134478889999999 99998864322 1345777888999 Q ss_pred CCcEEEeeeccccccch Q 019282 315 GLEYIGKKTHDSLLFNH 331 (343) Q Consensus 315 Gf~~v~~~~~~~l~~~~ 331 (343) ||....... ..++|.. T Consensus 176 g~~~~~~~~-~~~~~~~ 191 (223) T PRK14967 176 GLDAEVVAS-QWIPFGP 191 (223) T ss_pred CCCeEEEEe-eccCccH Confidence 997554433 3444544 No 78 >PLN03075 nicotianamine synthase; Provisional Probab=99.19 E-value=1.9e-10 Score=108.40 Aligned_cols=122 Identities=21% Similarity=0.288 Sum_probs=80.6 Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHH-HHH-HHcCCCceEEEEcChhHHHHHHHHhccc--CCCCCCCcEEEe Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGV-HFI-RYLNPENFHCLERDELSLMAAFRYELPS--QGLLHKRPIIVR 240 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~-~la-~~~~~~~~~vvdid~s~~~~a~a~~~~~--~~~~~~~~~~~~ 240 (343) .++...+.+..... .++.+|||||||.|.++. .++ ..++...++++|+|+.....+ ++... .++ .+++.+.. T Consensus 108 L~~lE~~~L~~~~~-~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~A--r~~~~~~~gL-~~rV~F~~ 183 (296) T PLN03075 108 LSKLEFDLLSQHVN-GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVA--RRLVSSDPDL-SKRMFFHT 183 (296) T ss_pred HHHHHHHHHHHhhc-CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHH--HHHhhhccCc-cCCcEEEE Confidence 34444555543323 367899999999874433 333 345666666666666555544 44442 343 34788887 Q ss_pred cccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe Q 019282 241 GEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 241 ~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) ++..+... ..+.||+|++. +++++..+....+|+.+++.|+| ||.+++.. T Consensus 184 ~Da~~~~~--~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkP-GG~Lvlr~ 233 (296) T PLN03075 184 ADVMDVTE--SLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAP-GALLMLRS 233 (296) T ss_pred Cchhhccc--ccCCcCEEEEe-cccccccccHHHHHHHHHHhcCC-CcEEEEec Confidence 76555431 24689999999 88888544455699999999999 99999874 No 79 >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. Probab=99.19 E-value=7.4e-10 Score=101.85 Aligned_cols=140 Identities=14% Similarity=0.225 Sum_probs=90.5 Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT 247 (343) Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~ 247 (343) +++.+..... ..+.+|||+|||+|.++..+++..+...++++|+++.....+ ++... .+. . ++.++.++..+ T Consensus 76 l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a--~~~~~~~~~-~-~~~~~~~d~~~-- 148 (251) T TIGR03534 76 LVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVA--RKNAARLGL-D-NVTFLQSDWFE-- 148 (251) T ss_pred HHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHH--HHHHHHcCC-C-eEEEEECchhc-- Confidence 4444444333 345689999999999999999877666666666665554444 43322 222 2 35556553322 Q ss_pred CCCCCCceeEEEEcccccc------CCchH------------------HHHHHHHHHhccCCCCcEEEEEeccccccCCC Q 019282 248 KFGSGVVYDLIYASAVFLH------MPDKL------------------VWVGLERLASKLRPYDGRIFVSHNIKFCSRLG 303 (343) Q Consensus 248 ~~~~~~~fDlIvs~~v~~h------l~~~~------------------~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~ 303 (343) ....++||+|+++..+.. +.... ...+++++.++|+| ||.+++..+. .. T Consensus 149 -~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~-gG~~~~~~~~-----~~ 221 (251) T TIGR03534 149 -PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP-GGWLLLEIGY-----DQ 221 (251) T ss_pred -cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc-CCEEEEEECc-----cH Confidence 223578999999654432 11111 12578999999999 9999987531 22 Q ss_pred HHHHHHHHHhcCCcEEEee Q 019282 304 GEECTKRLTSLGLEYIGKK 322 (343) Q Consensus 304 ~~~l~~~L~~aGf~~v~~~ 322 (343) .+++.+.++++||+.+... T Consensus 222 ~~~~~~~l~~~gf~~v~~~ 240 (251) T TIGR03534 222 GEAVRALFEAAGFADVETR 240 (251) T ss_pred HHHHHHHHHhCCCCceEEE Confidence 5778999999999877643 No 80 >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional Probab=99.19 E-value=2.9e-10 Score=106.67 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=74.4 Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCC-ceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPE-NFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED 243 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~-~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~ 243 (343) ..+.+.+.+.+.+. .+..+|||||||+|.++..+++.++.. ...++++|.+..+...+.+. . .++.+..++. T Consensus 70 l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~----~--~~~~~~~~d~ 142 (272) T PRK11088 70 LRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR----Y--PQVTFCVASS 142 (272) T ss_pred HHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh----C--CCCeEEEeec Confidence 44455555554332 345789999999999999998876533 23567777777777766542 1 1345555544 Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) .+++ + .+++||+|++.... . .+++++|+||| ||++++.. T Consensus 143 ~~lp-~-~~~sfD~I~~~~~~----~-----~~~e~~rvLkp-gG~li~~~ 181 (272) T PRK11088 143 HRLP-F-ADQSLDAIIRIYAP----C-----KAEELARVVKP-GGIVITVT 181 (272) T ss_pred ccCC-C-cCCceeEEEEecCC----C-----CHHHHHhhccC-CCEEEEEe Confidence 4443 3 36789999986531 1 46789999999 99998874 No 81 >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional Probab=99.19 E-value=3.2e-10 Score=110.71 Aligned_cols=116 Identities=9% Similarity=0.240 Sum_probs=76.8 Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCC--CCcEEEecccCCcCCCC Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLH--KRPIIVRGEDMDFTKFG 250 (343) Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~--~~~~~~~~~~~dl~~~~ 250 (343) +.+.++...+.+|||+|||+|.++..+++..+...++++|++. .+.+.++++.+.+... .++.++.++. +... T Consensus 220 lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~--~Av~~A~~N~~~n~~~~~~~v~~~~~D~--l~~~- 294 (378) T PRK15001 220 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESP--MAVASSRLNVETNMPEALDRCEFMINNA--LSGV- 294 (378) T ss_pred HHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCcccCceEEEEEccc--cccC- Confidence 4444444445699999999999999999887766666666655 4455445433322211 1344444322 1222 Q ss_pred CCCceeEEEEccccccC---CchHHHHHHHHHHhccCCCCcEEEEEe Q 019282 251 SGVVYDLIYASAVFLHM---PDKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl---~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) ..++||+|+|+-.||.. .+.....+|+.++++|+| ||.+++.. T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp-GG~L~iV~ 340 (378) T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI-NGELYIVA 340 (378) T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc-CCEEEEEE Confidence 34589999999887643 334456789999999999 99999885 No 82 >KOG1271 consensus Methyltransferases [General function prediction only] Probab=99.18 E-value=3.2e-10 Score=98.25 Aligned_cols=159 Identities=14% Similarity=0.284 Sum_probs=104.4 Q ss_pred CCCc---cchHHHHHHHHHhcC---CCCCC-eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCC Q 019282 160 GEPW---AGGRDVFEFLAEASH---ITPNS-HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLL 232 (343) Q Consensus 160 ~~~~---~~~~~~~~~l~~~~~---l~~~~-rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~ 232 (343) |+-| ....++++++.+... +.+.. +|||+|||.|.+...|++.--...++++|.++..... |+.+++.... T Consensus 39 GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L--A~niAe~~~~ 116 (227) T KOG1271|consen 39 GEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL--AQNIAERDGF 116 (227) T ss_pred cceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH--HHHHHHhcCC Confidence 5556 356677888877654 44554 9999999999999999985433446666666555444 4555443223 Q ss_pred CCCcEEEecccCCcCCCC-CCCceeEEEEccccccC------CchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHH Q 019282 233 HKRPIIVRGEDMDFTKFG-SGVVYDLIYASAVFLHM------PDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGE 305 (343) Q Consensus 233 ~~~~~~~~~~~~dl~~~~-~~~~fDlIvs~~v~~hl------~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~ 305 (343) .+.+.+.+. |+.+.. ..++||+|.--.++..+ +......++..+.+.|+| ||+++|+. .+++.+ T Consensus 117 ~n~I~f~q~---DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~-~gifvItS-----CN~T~d 187 (227) T KOG1271|consen 117 SNEIRFQQL---DITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSP-GGIFVITS-----CNFTKD 187 (227) T ss_pred CcceeEEEe---eccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCC-CcEEEEEe-----cCccHH Confidence 334555544 443211 35678888765555433 112223488999999999 99999974 456799 Q ss_pred HHHHHHHhcCCcEEEeeecccccc Q 019282 306 ECTKRLTSLGLEYIGKKTHDSLLF 329 (343) Q Consensus 306 ~l~~~L~~aGf~~v~~~~~~~l~~ 329 (343) ++.+.++..||+.........+.| T Consensus 188 ELv~~f~~~~f~~~~tvp~ptF~F 211 (227) T KOG1271|consen 188 ELVEEFENFNFEYLSTVPTPTFMF 211 (227) T ss_pred HHHHHHhcCCeEEEEeeccceEEe Confidence 999999999998876554434433 No 83 >PRK14968 putative methyltransferase; Provisional Probab=99.17 E-value=9.3e-10 Score=96.58 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=84.5 Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeE Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343) Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343) ..++.+|||+|||+|.++..+++. ...++++|+++. +...+++... .+..+..+.++.++ +.+...++.||+ T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~--~~~~a~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~d~ 93 (188) T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPY--AVECAKCNAKLNNIRNNGVEVIRSD---LFEPFRGDKFDV 93 (188) T ss_pred ccCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHH--HHHHHHHHHHHcCCCCcceEEEecc---ccccccccCceE Confidence 467789999999999999999885 345556555554 4443333222 22222114444442 222223458999 Q ss_pred EEEccccccCC-------------------chHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcE Q 019282 258 IYASAVFLHMP-------------------DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEY 318 (343) Q Consensus 258 Ivs~~v~~hl~-------------------~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~ 318 (343) |+++..+.+.+ ......+++++.++||| ||.+++.... ....+.+.+++.++||++ T Consensus 94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~-gG~~~~~~~~----~~~~~~l~~~~~~~g~~~ 168 (188) T PRK14968 94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP-GGRILLLQSS----LTGEDEVLEYLEKLGFEA 168 (188) T ss_pred EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC-CeEEEEEEcc----cCCHHHHHHHHHHCCCee Confidence 99976654321 11234579999999999 9998876531 123678899999999987 Q ss_pred EEee Q 019282 319 IGKK 322 (343) Q Consensus 319 v~~~ 322 (343) +... T Consensus 169 ~~~~ 172 (188) T PRK14968 169 EVVA 172 (188) T ss_pred eeee Confidence 6543 No 84 >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. Probab=99.16 E-value=3.7e-10 Score=99.45 Aligned_cols=130 Identities=19% Similarity=0.248 Sum_probs=86.5 Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecc-cCCcCCCCCCCcee Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGE-DMDFTKFGSGVVYD 256 (343) Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~-~~dl~~~~~~~~fD 256 (343) -++|+.||||+|||.|.+..+|.+. .....+++++|........+ .|+ . .++++ +.++..+ ++++|| T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-----rGv---~--Viq~Dld~gL~~f-~d~sFD 77 (193) T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-----RGV---S--VIQGDLDEGLADF-PDQSFD 77 (193) T ss_pred HcCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-----cCC---C--EEECCHHHhHhhC-CCCCcc Confidence 4678999999999999999999875 22333445555444333322 233 2 33332 2234445 588999 Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe------------------------cccc-----ccCCCHHHH Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH------------------------NIKF-----CSRLGGEEC 307 (343) Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~------------------------~~~~-----~~~~~~~~l 307 (343) .|+.+.+++++..+.. +|+++.|+-+. .++++ +..+ +...+..++ T Consensus 78 ~VIlsqtLQ~~~~P~~--vL~EmlRVgr~----~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DF 151 (193) T PF07021_consen 78 YVILSQTLQAVRRPDE--VLEEMLRVGRR----AIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDF 151 (193) T ss_pred EEehHhHHHhHhHHHH--HHHHHHHhcCe----EEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHH Confidence 9999999999998877 88888777554 34441 1111 122238889 Q ss_pred HHHHHhcCCcEEEeeecc Q 019282 308 TKRLTSLGLEYIGKKTHD 325 (343) Q Consensus 308 ~~~L~~aGf~~v~~~~~~ 325 (343) .++.++.|+++++....+ T Consensus 152 e~lc~~~~i~I~~~~~~~ 169 (193) T PF07021_consen 152 EDLCRELGIRIEERVFLD 169 (193) T ss_pred HHHHHHCCCEEEEEEEEc Confidence 999999999998876543 No 85 >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] Probab=99.15 E-value=7.9e-10 Score=104.03 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=100.7 Q ss_pred hhhhhccCCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCC Q 019282 153 EEHHSNYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLL 232 (343) Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~ 232 (343) +.-..|-.++++-.+--++.+.+. +.++.+|||+|||+|.+++..++ ++...+.++|+|+-....++.+ .+.+.. T Consensus 136 DPGlAFGTG~HpTT~lcL~~Le~~--~~~g~~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eN--a~~N~v 210 (300) T COG2264 136 DPGLAFGTGTHPTTSLCLEALEKL--LKKGKTVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAAREN--ARLNGV 210 (300) T ss_pred ccccccCCCCChhHHHHHHHHHHh--hcCCCEEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHH--HHHcCC Confidence 333445566666555556666543 34789999999999999997776 6666788899998777776443 332221 Q ss_pred CCCcEEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHH Q 019282 233 HKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLT 312 (343) Q Consensus 233 ~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~ 312 (343) ...+ .. ...+.......++||+|+++-.. + -...+...+++.+|| ||+++++-- ... -.+.+.+.++ T Consensus 211 ~~~~-~~--~~~~~~~~~~~~~~DvIVANILA----~-vl~~La~~~~~~lkp-gg~lIlSGI---l~~-q~~~V~~a~~ 277 (300) T COG2264 211 ELLV-QA--KGFLLLEVPENGPFDVIVANILA----E-VLVELAPDIKRLLKP-GGRLILSGI---LED-QAESVAEAYE 277 (300) T ss_pred chhh-hc--ccccchhhcccCcccEEEehhhH----H-HHHHHHHHHHHHcCC-CceEEEEee---hHh-HHHHHHHHHH Confidence 1111 11 11233333345699999998533 2 233488999999999 999998841 111 1677888999 Q ss_pred hcCCcEEEeee Q 019282 313 SLGLEYIGKKT 323 (343) Q Consensus 313 ~aGf~~v~~~~ 323 (343) ++||+++.... T Consensus 278 ~~gf~v~~~~~ 288 (300) T COG2264 278 QAGFEVVEVLE 288 (300) T ss_pred hCCCeEeEEEe Confidence 99999887553 No 86 >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed Probab=99.15 E-value=3.3e-09 Score=107.86 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=84.4 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343) ++.+|||+|||+|.++..++..++...++++|+++.....+ +++.. .+. ..++.++.++.. +....++||+|+ T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A--~~N~~~~~l-~~~v~~~~~D~~---~~~~~~~fDlIv 211 (506) T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVA--KSNAIKYEV-TDRIQIIHSNWF---ENIEKQKFDFIV 211 (506) T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHH--HHHHHHcCC-ccceeeeecchh---hhCcCCCccEEE Confidence 34689999999999999999877766677777766555554 43332 232 225556655322 111245899999 Q ss_pred Eccccc--------------cCCc----------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC Q 019282 260 ASAVFL--------------HMPD----------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG 315 (343) Q Consensus 260 s~~v~~--------------hl~~----------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG 315 (343) ++--+. |-|. .....+++.+.++|+| ||.+++..+. ...+.+.+.+.+.| T Consensus 212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~-gG~l~lEig~-----~q~~~v~~~~~~~g 285 (506) T PRK01544 212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP-NGKIILEIGF-----KQEEAVTQIFLDHG 285 (506) T ss_pred ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC-CCEEEEEECC-----chHHHHHHHHHhcC Confidence 963221 1110 1123467788899999 9999987531 12678888999999 Q ss_pred CcEEEe Q 019282 316 LEYIGK 321 (343) Q Consensus 316 f~~v~~ 321 (343) |..+.. T Consensus 286 ~~~~~~ 291 (506) T PRK01544 286 YNIESV 291 (506) T ss_pred CCceEE Confidence 986653 No 87 >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional Probab=99.15 E-value=4.1e-10 Score=101.94 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=78.2 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343) ...+...+.+.+.+.++.+|||||||+|..+..+++..+. ..+++++|.++.+.+.++++.+ .+. .++.++.++.. T Consensus 61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~l~~~g~--~~v~~~~gd~~ 137 (212) T PRK13942 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKTLKKLGY--DNVEVIVGDGT 137 (212) T ss_pred cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCC--CCeEEEECCcc Confidence 4556777777788999999999999999999998886543 2234444545455555554333 232 25666666433 Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) .. +...++||+|++....++++ +.+.+.||| ||++++.. T Consensus 138 ~~--~~~~~~fD~I~~~~~~~~~~--------~~l~~~Lkp-gG~lvi~~ 176 (212) T PRK13942 138 LG--YEENAPYDRIYVTAAGPDIP--------KPLIEQLKD-GGIMVIPV 176 (212) T ss_pred cC--CCcCCCcCEEEECCCcccch--------HHHHHhhCC-CcEEEEEE Confidence 22 22357899999987775543 346778999 99998865 No 88 >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional Probab=99.14 E-value=1.1e-08 Score=97.70 Aligned_cols=143 Identities=16% Similarity=0.207 Sum_probs=91.7 Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEc Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343) Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343) .+|||+|||+|.++..++...+...++++|+++.....+ +++.. .+. ..++.++.++ +.+..+.++||+|+++ T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A--~~n~~~~~l-~~~i~~~~~D---~~~~l~~~~fDlIvsN 208 (307) T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVA--EINIERHGL-EDRVTLIESD---LFAALPGRRYDLIVSN 208 (307) T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHH--HHHHHHhCC-CCcEEEEECc---hhhhCCCCCccEEEEC Confidence 689999999999999999877666666776666555555 43333 232 2356666653 3222134589999997 Q ss_pred ccc-------------ccCCc----------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcE Q 019282 262 AVF-------------LHMPD----------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEY 318 (343) Q Consensus 262 ~v~-------------~hl~~----------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~ 318 (343) --+ +|-|. .....+++.+.+.|+| ||.+++..+. ....+.+.+.+.||.. T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p-gG~l~~E~g~------~~~~~~~~~~~~~~~~ 281 (307) T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE-DGVLVVEVGN------SRVHLEEAYPDVPFTW 281 (307) T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC-CCEEEEEECc------CHHHHHHHHhhCCCEE Confidence 311 11111 1224578999999999 9999987642 2345788888889887 Q ss_pred EEeeeccccccch-hHHhhhh Q 019282 319 IGKKTHDSLLFNH-YEIWFEF 338 (343) Q Consensus 319 v~~~~~~~l~~~~-~e~w~~~ 338 (343) .....+....+-. ++..+.+ T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~ 302 (307) T PRK11805 282 LEFENGGDGVFLLTREQLLAH 302 (307) T ss_pred EEecCCCceEEEEEHHHHHHh Confidence 7666544433322 4444444 No 89 >COG4123 Predicted O-methyltransferase [General function prediction only] Probab=99.14 E-value=5.1e-10 Score=102.74 Aligned_cols=139 Identities=18% Similarity=0.195 Sum_probs=96.9 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCcee Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343) .......+|||+|||+|..++.+++..++..+.++++++.....+ ++..+.+....++.++.++..++.......+|| T Consensus 40 ~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A--~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD 117 (248) T COG4123 40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMA--QRNVALNPLEERIQVIEADIKEFLKALVFASFD 117 (248) T ss_pred cccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHH--HHHHHhCcchhceeEehhhHHHhhhcccccccC Confidence 455557899999999999999999987767777777766554444 444443334557788876444444333345799 Q ss_pred EEEEccccccCCch----------------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE Q 019282 257 LIYASAVFLHMPDK----------------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343) Q Consensus 257 lIvs~~v~~hl~~~----------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343) +|+|+--+.-.+.. ...++++...++||| ||.+.+.+..+ ...++.+.+.+.+|+..+ T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~-~G~l~~V~r~e-----rl~ei~~~l~~~~~~~k~ 191 (248) T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP-GGRLAFVHRPE-----RLAEIIELLKSYNLEPKR 191 (248) T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC-CCEEEEEecHH-----HHHHHHHHHHhcCCCceE Confidence 99998655433222 245789999999999 99999886411 245667888888888776 Q ss_pred eee Q 019282 321 KKT 323 (343) Q Consensus 321 ~~~ 323 (343) ... T Consensus 192 i~~ 194 (248) T COG4123 192 IQF 194 (248) T ss_pred EEE Confidence 554 No 90 >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown. Probab=99.13 E-value=1e-09 Score=97.85 Aligned_cols=147 Identities=21% Similarity=0.244 Sum_probs=98.7 Q ss_pred HHHHHHHhcCCCCCC-eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHH--HHHHHHhcccCCCCCCCcEEEecccCC Q 019282 169 VFEFLAEASHITPNS-HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL--MAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343) Q Consensus 169 ~~~~l~~~~~l~~~~-rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~--~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343) +.+.|.+. +++.. +|||||||||..+.++++.++...+...|++.... ..+...+....++. .+..++..... T Consensus 14 Il~vL~~~--l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~--~P~~lDv~~~~ 89 (204) T PF06080_consen 14 ILEVLKQY--LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR--PPLALDVSAPP 89 (204) T ss_pred HHHHHHHH--hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccC--CCeEeecCCCC Confidence 45555544 33344 59999999999999999999998899999998773 22222221112222 22333221111 Q ss_pred cCCCC-----CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc------------cc-------ccC Q 019282 246 FTKFG-----SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI------------KF-------CSR 301 (343) Q Consensus 246 l~~~~-----~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~------------~~-------~~~ 301 (343) .+ +. ..+.||+|++.+++|-++......+|+.+.++|+| ||.|++--+. .| ... T Consensus 90 w~-~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~-gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~ 167 (204) T PF06080_consen 90 WP-WELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKP-GGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPE 167 (204) T ss_pred Cc-cccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCC-CCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCC Confidence 11 11 24689999999999988998888999999999999 9999886211 11 112 Q ss_pred CC---HHHHHHHHHhcCCcEEEe Q 019282 302 LG---GEECTKRLTSLGLEYIGK 321 (343) Q Consensus 302 ~~---~~~l~~~L~~aGf~~v~~ 321 (343) .| .+++.++.+++|++.++. T Consensus 168 ~GiRD~e~v~~lA~~~GL~l~~~ 190 (204) T PF06080_consen 168 WGIRDIEDVEALAAAHGLELEED 190 (204) T ss_pred cCccCHHHHHHHHHHCCCccCcc Confidence 22 678888889999986543 No 91 >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. Probab=99.13 E-value=6e-10 Score=100.89 Aligned_cols=114 Identities=20% Similarity=0.275 Sum_probs=76.5 Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343) Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343) ..+.+.+.+.+.+.++.+|||||||+|.++..+++..+. ..+++++|.++.+.+.++++.. .+. .++.++.++..+ T Consensus 63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~-~g~V~~vD~~~~~~~~A~~~~~~~g~--~~v~~~~~d~~~ 139 (215) T TIGR00080 63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGR-DGLVVSIERIPELAEKAERRLRKLGL--DNVIVIVGDGTQ 139 (215) T ss_pred HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHCCC--CCeEEEECCccc Confidence 445667777778899999999999999999999886543 2234444444455555554433 333 246666654333 Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) .. ....+||+|++.....+++ +.+.+.|+| ||++++.. T Consensus 140 ~~--~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~-gG~lv~~~ 177 (215) T TIGR00080 140 GW--EPLAPYDRIYVTAAGPKIP--------EALIDQLKE-GGILVMPV 177 (215) T ss_pred CC--cccCCCCEEEEcCCccccc--------HHHHHhcCc-CcEEEEEE Confidence 22 2246899999987665543 457889999 99998864 No 92 >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] Probab=99.12 E-value=1.2e-09 Score=102.28 Aligned_cols=117 Identities=16% Similarity=0.229 Sum_probs=82.3 Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG 250 (343) Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~ 250 (343) +.|.+.+....+.+|||+|||+|.++..+++..|...++.+|++...+..+ +++...+...+. .+... ..+.+. T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~a--r~Nl~~N~~~~~-~v~~s--~~~~~v- 221 (300) T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESA--RKNLAANGVENT-EVWAS--NLYEPV- 221 (300) T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHH--HHhHHHcCCCcc-EEEEe--cccccc- Confidence 445556666666799999999999999999999888899999888666666 443333322222 22222 122322 Q ss_pred CCCceeEEEEccccccCCc---hHHHHHHHHHHhccCCCCcEEEEEec Q 019282 251 SGVVYDLIYASAVFLHMPD---KLVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~---~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) .++||+|+|+--||.-.. ...+.+++...+.|++ ||.|.|..+ T Consensus 222 -~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~-gGeL~iVan 267 (300) T COG2813 222 -EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP-GGELWIVAN 267 (300) T ss_pred -cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc-CCEEEEEEc Confidence 349999999999963322 2233789999999999 999988764 No 93 >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA. Probab=99.11 E-value=8.4e-10 Score=98.43 Aligned_cols=132 Identities=19% Similarity=0.157 Sum_probs=85.1 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC-CCCCCceeEEE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK-FGSGVVYDLIY 259 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~-~~~~~~fDlIv 259 (343) ...+|||||||+|.++..+++..+...++++|++......+..+. ...++ . ++.++.++..++.. +..++.+|.|+ T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~-~~~~l-~-ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194) T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKA-NKLGL-K-NLHVLCGDANELLDKFFPDGSLSKVF 92 (194) T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHH-HHhCC-C-CEEEEccCHHHHHHhhCCCCceeEEE Confidence 456899999999999999999887777677776665554443221 22333 2 56667665544432 22346899999 Q ss_pred EccccccCCch------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC-CcEEE Q 019282 260 ASAVFLHMPDK------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG-LEYIG 320 (343) Q Consensus 260 s~~v~~hl~~~------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG-f~~v~ 320 (343) ++....+.... ....++++++++||| ||.+++......+ .+.+.+.+.+.| |+.+. T Consensus 93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkp-gG~l~~~td~~~~----~~~~~~~~~~~~~f~~~~ 155 (194) T TIGR00091 93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKK-GGVIHFKTDNEPL----FEDMLKVLSENDLFENTS 155 (194) T ss_pred EECCCcCCCCCccccccCCHHHHHHHHHHhCC-CCEEEEEeCCHHH----HHHHHHHHHhCCCeEecc Confidence 87644332211 013489999999999 9999887532221 344566676666 87664 No 94 >TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. Probab=99.11 E-value=8.5e-10 Score=104.42 Aligned_cols=144 Identities=12% Similarity=0.147 Sum_probs=87.9 Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEE Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIV 239 (343) Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~ 239 (343) .+.++..+...+.+.. ...++.+|||+|||+|.++..+++ .+...++++|+++.+...+ +++...+......... T Consensus 140 tG~h~tt~l~l~~l~~--~~~~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a--~~n~~~n~~~~~~~~~ 214 (288) T TIGR00406 140 TGTHPTTSLCLEWLED--LDLKDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESA--RKNAELNQVSDRLQVK 214 (288) T ss_pred CCCCHHHHHHHHHHHh--hcCCCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHH--HHHHHHcCCCcceEEE Confidence 3444433434444432 234678999999999999988776 3444566666666554444 4433322222233333 Q ss_pred ecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE Q 019282 240 RGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343) Q Consensus 240 ~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343) .. +.... ..++||+|+++.+.++ ...++.++.++||| ||.++++.-. ....+++.+.+++. |+.+ T Consensus 215 ~~---~~~~~-~~~~fDlVvan~~~~~-----l~~ll~~~~~~Lkp-gG~li~sgi~----~~~~~~v~~~~~~~-f~~~ 279 (288) T TIGR00406 215 LI---YLEQP-IEGKADVIVANILAEV-----IKELYPQFSRLVKP-GGWLILSGIL----ETQAQSVCDAYEQG-FTVV 279 (288) T ss_pred ec---ccccc-cCCCceEEEEecCHHH-----HHHHHHHHHHHcCC-CcEEEEEeCc----HhHHHHHHHHHHcc-Ccee Confidence 22 22222 3568999999865432 23489999999999 9999987421 11256777888776 9877 Q ss_pred Eeee Q 019282 320 GKKT 323 (343) Q Consensus 320 ~~~~ 323 (343) .... T Consensus 280 ~~~~ 283 (288) T TIGR00406 280 EIRQ 283 (288) T ss_pred eEec Confidence 6543 No 95 >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... Probab=99.10 E-value=8.7e-10 Score=104.32 Aligned_cols=148 Identities=19% Similarity=0.285 Sum_probs=96.5 Q ss_pred hhhhhccCCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCC Q 019282 153 EEHHSNYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGL 231 (343) Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~ 231 (343) +....|-.+.++-.+-.++.|.+. ..++.+|||+|||+|.+++..++ ++...+.++|+|+.....+.. +.. .+. T Consensus 135 dPg~AFGTG~H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~--N~~~N~~ 209 (295) T PF06325_consen 135 DPGMAFGTGHHPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARE--NAELNGV 209 (295) T ss_dssp STTSSS-SSHCHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHH--HHHHTT- T ss_pred CCCCcccCCCCHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHH--HHHHcCC Confidence 444455566666666667777654 55778999999999999997776 566678889999877766643 333 333 Q ss_pred CCCCcEEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHH Q 019282 232 LHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRL 311 (343) Q Consensus 232 ~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L 311 (343) .. ++... ...+. ..++||+|+++-.. ......+..+.++|+| ||+++++--... ..+++.+.+ T Consensus 210 ~~-~~~v~-----~~~~~-~~~~~dlvvANI~~-----~vL~~l~~~~~~~l~~-~G~lIlSGIl~~----~~~~v~~a~ 272 (295) T PF06325_consen 210 ED-RIEVS-----LSEDL-VEGKFDLVVANILA-----DVLLELAPDIASLLKP-GGYLILSGILEE----QEDEVIEAY 272 (295) T ss_dssp TT-CEEES-----CTSCT-CCS-EEEEEEES-H-----HHHHHHHHHCHHHEEE-EEEEEEEEEEGG----GHHHHHHHH T ss_pred Ce-eEEEE-----Eeccc-ccccCCEEEECCCH-----HHHHHHHHHHHHhhCC-CCEEEEccccHH----HHHHHHHHH Confidence 32 33221 11112 24799999997544 2334578889999999 999999832111 267788888 Q ss_pred HhcCCcEEEeee Q 019282 312 TSLGLEYIGKKT 323 (343) Q Consensus 312 ~~aGf~~v~~~~ 323 (343) ++ ||+.+.... T Consensus 273 ~~-g~~~~~~~~ 283 (295) T PF06325_consen 273 KQ-GFELVEERE 283 (295) T ss_dssp HT-TEEEEEEEE T ss_pred HC-CCEEEEEEE Confidence 76 999877554 No 96 >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Probab=99.10 E-value=1.1e-10 Score=104.55 Aligned_cols=141 Identities=23% Similarity=0.204 Sum_probs=95.1 Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF 249 (343) Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~ 249 (343) ++.++...+..+-.++||+|||||..+..+..... . .+|+|+|..|.+.+.++ +..+ .+.+++...|... T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~--ltGvDiS~nMl~kA~eK---g~YD---~L~~Aea~~Fl~~ 183 (287) T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMAD--R--LTGVDISENMLAKAHEK---GLYD---TLYVAEAVLFLED 183 (287) T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHHHh--h--ccCCchhHHHHHHHHhc---cchH---HHHHHHHHHHhhh Confidence 33344445556668999999999999999887442 3 44455555666655432 2322 1223333344433 Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec-----cccc----cC--CCHHHHHHHHHhcCCcE Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN-----IKFC----SR--LGGEECTKRLTSLGLEY 318 (343) Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~-----~~~~----~~--~~~~~l~~~L~~aGf~~ 318 (343) ..+..||+|++..++.+++.-+. ++-.....|+| ||.|.++.. -.|. .+ ++..-+...++..||++ T Consensus 184 ~~~er~DLi~AaDVl~YlG~Le~--~~~~aa~~L~~-gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~ 260 (287) T COG4976 184 LTQERFDLIVAADVLPYLGALEG--LFAGAAGLLAP-GGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEV 260 (287) T ss_pred ccCCcccchhhhhHHHhhcchhh--HHHHHHHhcCC-CceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceE Confidence 34679999999999999998766 89999999999 999988720 0111 11 23677888999999999 Q ss_pred EEeee Q 019282 319 IGKKT 323 (343) Q Consensus 319 v~~~~ 323 (343) +..+. T Consensus 261 i~~~~ 265 (287) T COG4976 261 IAIED 265 (287) T ss_pred EEeec Confidence 98664 No 97 >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional Probab=99.10 E-value=3.3e-09 Score=103.57 Aligned_cols=114 Identities=13% Similarity=0.066 Sum_probs=78.0 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCcee Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343) .....+..+||||||+|.++..+++..+...+.+++++......+..+. ...++ . ++.++.+++..+.....++++| T Consensus 118 ~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka-~~~gL-~-NV~~i~~DA~~ll~~~~~~s~D 194 (390) T PRK14121 118 ISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQI-ELLNL-K-NLLIINYDARLLLELLPSNSVE 194 (390) T ss_pred hcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHH-HHcCC-C-cEEEEECCHHHhhhhCCCCcee Confidence 3445567999999999999999999887777777777765555443322 22333 2 4667776554443333578999 Q ss_pred EEEEccccccCCch----HHHHHHHHHHhccCCCCcEEEEEe Q 019282 257 LIYASAVFLHMPDK----LVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 257 lIvs~~v~~hl~~~----~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) .|+++....|...+ ....++++++++|+| ||.+.+.. T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkp-GG~l~l~T 235 (390) T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKP-GGTLELRT 235 (390) T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCC-CcEEEEEE Confidence 99986544332221 114589999999999 99998864 No 98 >TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea. Probab=99.09 E-value=1.2e-09 Score=105.24 Aligned_cols=142 Identities=15% Similarity=0.063 Sum_probs=90.2 Q ss_pred cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecc Q 019282 164 AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGE 242 (343) Q Consensus 164 ~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~ 242 (343) .+...+...+.....++++.+|||+|||||.++..++.. ... ++++|.+..+...++.+.. .+..+ +.+..++ T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~--~~~--v~g~Di~~~~~~~a~~nl~~~g~~~--i~~~~~D 238 (329) T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM--GAK--VIGCDIDWKMVAGARINLEHYGIED--FFVKRGD 238 (329) T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh--CCe--EEEEcCCHHHHHHHHHHHHHhCCCC--CeEEecc Confidence 344556666666667888999999999999998876552 234 4444554455544444332 33322 4555554 Q ss_pred cCCcCCCCCCCceeEEEEcccccc-------CCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC Q 019282 243 DMDFTKFGSGVVYDLIYASAVFLH-------MPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG 315 (343) Q Consensus 243 ~~dl~~~~~~~~fDlIvs~~v~~h-------l~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG 315 (343) ..+++ . .++.||+|+++..+.. ........++++++++||| ||++++.... ..++.+.++++| T Consensus 239 ~~~l~-~-~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~-gG~lv~~~~~-------~~~~~~~~~~~g 308 (329) T TIGR01177 239 ATKLP-L-SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKS-EGWIVYAVPT-------RIDLESLAEDAF 308 (329) T ss_pred hhcCC-c-ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccC-CcEEEEEEcC-------CCCHHHHHhhcC Confidence 44433 2 2578999999744321 1112235689999999999 9999876531 124667899999 Q ss_pred CcEEEee Q 019282 316 LEYIGKK 322 (343) Q Consensus 316 f~~v~~~ 322 (343) | ++... T Consensus 309 ~-i~~~~ 314 (329) T TIGR01177 309 R-VVKRF 314 (329) T ss_pred c-chhee Confidence 9 66543 No 99 >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] Probab=99.09 E-value=3e-09 Score=93.21 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=100.4 Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343) Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343) +++.......+.+.++.+++|||||||..+..++...+...++.++-++ ......+++.+. +.-.++.++.+++.+. T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~--~a~~~~~~N~~~-fg~~n~~vv~g~Ap~~ 96 (187) T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDE--EALELIERNAAR-FGVDNLEVVEGDAPEA 96 (187) T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCH--HHHHHHHHHHHH-hCCCcEEEEeccchHh Confidence 4455666667899999999999999999999999666666555555554 444433333221 2234677777755554 Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCC-cEEEeeecc Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGL-EYIGKKTHD 325 (343) Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf-~~v~~~~~~ 325 (343) ..- .. .||.|+.... .. ...+|+.+...||| ||++++..- .--+.....+.+++.|+ ++++..... T Consensus 97 L~~-~~-~~daiFIGGg-~~-----i~~ile~~~~~l~~-ggrlV~nai----tlE~~~~a~~~~~~~g~~ei~~v~is~ 163 (187) T COG2242 97 LPD-LP-SPDAIFIGGG-GN-----IEEILEAAWERLKP-GGRLVANAI----TLETLAKALEALEQLGGREIVQVQISR 163 (187) T ss_pred hcC-CC-CCCEEEECCC-CC-----HHHHHHHHHHHcCc-CCeEEEEee----cHHHHHHHHHHHHHcCCceEEEEEeec Confidence 321 12 7999999876 33 33489999999999 999998741 11124556778999999 777666544 Q ss_pred ccccchh Q 019282 326 SLLFNHY 332 (343) Q Consensus 326 ~l~~~~~ 332 (343) ......+ T Consensus 164 ~~~lg~~ 170 (187) T COG2242 164 GKPLGGG 170 (187) T ss_pred ceeccCe Confidence 4443333 No 100 >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] Probab=99.08 E-value=1.1e-09 Score=97.58 Aligned_cols=137 Identities=16% Similarity=0.134 Sum_probs=87.9 Q ss_pred chHHHHHHHHHhcCCCC--CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecc Q 019282 165 GGRDVFEFLAEASHITP--NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGE 242 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~--~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~ 242 (343) ++.++.+..++.+.++. ..-|||||||+|..+..+.+ .+...+|+|+|+.|...+.+.. +.. .....+- T Consensus 32 IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~----~Gh~wiGvDiSpsML~~a~~~e---~eg-dlil~DM- 102 (270) T KOG1541|consen 32 IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD----SGHQWIGVDISPSMLEQAVERE---LEG-DLILCDM- 102 (270) T ss_pred ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc----CCceEEeecCCHHHHHHHHHhh---hhc-Ceeeeec- Confidence 45667777777777766 56799999999999887766 4455555555555555544311 111 2222211 Q ss_pred cCCcCCCCCCCceeEEEEcccccc---------CCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC--HHHHHHHH Q 019282 243 DMDFTKFGSGVVYDLIYASAVFLH---------MPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG--GEECTKRL 311 (343) Q Consensus 243 ~~dl~~~~~~~~fDlIvs~~v~~h---------l~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~--~~~l~~~L 311 (343) ...++ + ..++||.++++..+.+ .|.+.+..+|..++.+|++ |++.++.+- .... .+.+.+.. T Consensus 103 G~Glp-f-rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r-g~raV~QfY----pen~~q~d~i~~~a 175 (270) T KOG1541|consen 103 GEGLP-F-RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKR-GARAVLQFY----PENEAQIDMIMQQA 175 (270) T ss_pred CCCCC-C-CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhcc-CceeEEEec----ccchHHHHHHHHHH Confidence 01222 3 3689999999877654 3445566789999999999 999988642 2111 45666667 Q ss_pred HhcCCc Q 019282 312 TSLGLE 317 (343) Q Consensus 312 ~~aGf~ 317 (343) .++||. T Consensus 176 ~~aGF~ 181 (270) T KOG1541|consen 176 MKAGFG 181 (270) T ss_pred HhhccC Confidence 778875 No 101 >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional Probab=99.06 E-value=2.3e-09 Score=96.85 Aligned_cols=123 Identities=14% Similarity=0.115 Sum_probs=78.3 Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC-------CCCC Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT-------KFGS 251 (343) Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~-------~~~~ 251 (343) ++++.+|||||||||.++..+++..+.. ..++++|.++ + . .. ..+.++.++..+.. .+ . T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~-~~V~aVDi~~-~----~-----~~--~~v~~i~~D~~~~~~~~~i~~~~-~ 114 (209) T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDK-GRVIACDILP-M----D-----PI--VGVDFLQGDFRDELVLKALLERV-G 114 (209) T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCC-ceEEEEeccc-c----c-----CC--CCcEEEecCCCChHHHHHHHHHh-C Confidence 5788899999999999999999876432 2445555443 1 1 11 13556665444321 12 3 Q ss_pred CCceeEEEEccccccCCchH---------HHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHh--cCCcEEE Q 019282 252 GVVYDLIYASAVFLHMPDKL---------VWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTS--LGLEYIG 320 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~---------~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~--aGf~~v~ 320 (343) .+.||+|++..+.++.+.+. ...+|+.+.++||| ||.+++... ..+.+.+.+.. ..|..++ T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp-GG~~vi~~~-------~~~~~~~~l~~l~~~f~~v~ 186 (209) T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP-GGSFVVKVF-------QGEGFDEYLREIRSLFTKVK 186 (209) T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC-CCEEEEEEe-------cCcCHHHHHHHHHhCceEEE Confidence 56899999987776654431 13489999999999 999998642 12233334444 4777766 Q ss_pred eee Q 019282 321 KKT 323 (343) Q Consensus 321 ~~~ 323 (343) ... T Consensus 187 ~~K 189 (209) T PRK11188 187 VRK 189 (209) T ss_pred EEC Confidence 544 No 102 >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional Probab=99.06 E-value=2.5e-09 Score=103.52 Aligned_cols=113 Identities=14% Similarity=0.162 Sum_probs=75.0 Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCC Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGS 251 (343) Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~ 251 (343) +.+.+......+|||+|||+|.++..+++..+...++++|++..++..+ ++..+ .++ ...++.. |.... . T Consensus 188 Ll~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A--~~nl~~n~l---~~~~~~~---D~~~~-~ 258 (342) T PRK09489 188 LLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESS--RATLAANGL---EGEVFAS---NVFSD-I 258 (342) T ss_pred HHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHH--HHHHHHcCC---CCEEEEc---ccccc-c Confidence 3333343445689999999999999999877666666666665554444 43322 222 1223332 32222 2 Q ss_pred CCceeEEEEccccccCCc---hHHHHHHHHHHhccCCCCcEEEEEec Q 019282 252 GVVYDLIYASAVFLHMPD---KLVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~---~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) .+.||+|+++..||+... .....+++++.+.||| ||.+++..+ T Consensus 259 ~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp-gG~L~iVan 304 (342) T PRK09489 259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNS-GGELRIVAN 304 (342) T ss_pred CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCc-CCEEEEEEe Confidence 568999999999976422 3445689999999999 999988753 No 103 >PRK07402 precorrin-6B methylase; Provisional Probab=99.03 E-value=2.7e-09 Score=95.13 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=84.2 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343) .+++...+...+.+.++.+|||+|||+|.++..+++..+...++++|++ +.+.+.++++.+ .+. .++.++.++.. T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s--~~~~~~a~~n~~~~~~--~~v~~~~~d~~ 100 (196) T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERD--EEVVNLIRRNCDRFGV--KNVEVIEGSAP 100 (196) T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCC--CCeEEEECchH Confidence 3445555666778888899999999999999999876554444555554 455554444332 232 24555655433 Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHH---hcCCcEEEe Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLT---SLGLEYIGK 321 (343) Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~---~aGf~~v~~ 321 (343) +..+. ....+|.|+... . .....+++++.++|+| ||++++.... .. ...++.+.++ ..|++++.. T Consensus 101 ~~~~~-~~~~~d~v~~~~-----~-~~~~~~l~~~~~~Lkp-gG~li~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~ 168 (196) T PRK07402 101 ECLAQ-LAPAPDRVCIEG-----G-RPIKEILQAVWQYLKP-GGRLVATASS-LE---GLYAISEGLAQLQARNIEVVQA 168 (196) T ss_pred HHHhh-CCCCCCEEEEEC-----C-cCHHHHHHHHHHhcCC-CeEEEEEeec-HH---HHHHHHHHHHhcCCCCceEEEE Confidence 21111 123457665432 1 1234589999999999 9999887531 10 1122333343 457777765 Q ss_pred eec Q 019282 322 KTH 324 (343) Q Consensus 322 ~~~ 324 (343) ... T Consensus 169 ~~~ 171 (196) T PRK07402 169 AVN 171 (196) T ss_pred Ehh Confidence 543 No 104 >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] Probab=99.03 E-value=2.3e-09 Score=95.81 Aligned_cols=113 Identities=19% Similarity=0.317 Sum_probs=81.4 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc-cCCCCCCCcEEEecccC Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP-SQGLLHKRPIIVRGEDM 244 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~-~~~~~~~~~~~~~~~~~ 244 (343) +-.+...+.+.+.++++.+|||||||+|+.+..+++... +|+.++......+.++++. ..|+. ++....++ T Consensus 57 ~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~----~V~siEr~~~L~~~A~~~L~~lg~~--nV~v~~gD-- 128 (209) T COG2518 57 APHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG----RVVSIERIEELAEQARRNLETLGYE--NVTVRHGD-- 128 (209) T ss_pred CcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC----eEEEEEEcHHHHHHHHHHHHHcCCC--ceEEEECC-- Confidence 345677788888999999999999999999999988543 3555554445555555433 34443 36666552 Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) -...++...+||.|+.......+|+. +.+.||| ||++++-.+ T Consensus 129 G~~G~~~~aPyD~I~Vtaaa~~vP~~--------Ll~QL~~-gGrlv~PvG 170 (209) T COG2518 129 GSKGWPEEAPYDRIIVTAAAPEVPEA--------LLDQLKP-GGRLVIPVG 170 (209) T ss_pred cccCCCCCCCcCEEEEeeccCCCCHH--------HHHhccc-CCEEEEEEc Confidence 22334456899999999998888765 7789999 999998754 No 105 >PHA03411 putative methyltransferase; Provisional Probab=99.03 E-value=5e-09 Score=97.61 Aligned_cols=128 Identities=16% Similarity=0.210 Sum_probs=86.8 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343) ....+|||+|||+|.++..++...+...++++|+++. +.+.++++ .. ++.++.+ |+.++...+.||+|+ T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~--al~~Ar~n----~~--~v~~v~~---D~~e~~~~~kFDlII 131 (279) T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPE--FARIGKRL----LP--EAEWITS---DVFEFESNEKFDVVI 131 (279) T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHh----Cc--CCEEEEC---chhhhcccCCCcEEE Confidence 3456999999999999998877654455666666654 44444432 11 3445554 444333456899999 Q ss_pred EccccccCCchHH------------------HHHHHHHHhccCCCCcEEEEEecc-c-cccCCCHHHHHHHHHhcCCcEE Q 019282 260 ASAVFLHMPDKLV------------------WVGLERLASKLRPYDGRIFVSHNI-K-FCSRLGGEECTKRLTSLGLEYI 319 (343) Q Consensus 260 s~~v~~hl~~~~~------------------~~~L~~l~r~LkP~GG~lvi~~~~-~-~~~~~~~~~l~~~L~~aGf~~v 319 (343) ++..++|.+.... ...+.....+|+| +|.+++.... + |...+.+++++++|+++||... T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p-~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~ 210 (279) T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP-TGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTY 210 (279) T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecC-CceEEEEEeccccccccCCHHHHHHHHHhcCcEec Confidence 9999988654321 3466777889999 9988766322 2 3444569999999999999743 No 106 >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A .... Probab=99.03 E-value=8.9e-10 Score=89.36 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=73.7 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEE Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343) |.+|||+|||+|.++..+++.. ...++++|+++.....+ +.... .+. ..++.++.++..++.....+++||+|++ T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a--~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117) T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELA--RRNLPRNGL-DDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117) T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHH--HHHCHHCTT-TTTEEEEESHHHHHHHTCTTT-EEEEEE T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHH--HHHHHHccC-CceEEEEECchhhchhhccCceeEEEEE Confidence 4689999999999999999876 56777777777665555 33333 333 3357777775555442224689999999 Q ss_pred ccccccCCc------hHHHHHHHHHHhccCCCCcEEEEEe Q 019282 261 SAVFLHMPD------KLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 261 ~~v~~hl~~------~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) +--+..... .....+++++.++||| ||.+++.. T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~-gG~~~~~~ 115 (117) T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKP-GGVLVFIT 115 (117) T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEE-EEEEEEEE T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCC-CeEEEEEe Confidence 877753211 1234689999999999 99998753 No 107 >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional Probab=99.02 E-value=9.3e-09 Score=101.10 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=89.7 Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343) Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343) .+.+.+... ++++.+|||+|||+|.++..++...+...++++|+++.+...+ +++.... ..++.++.++..+.. T Consensus 240 ~LVe~aL~~--l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~A--reNa~~~--g~rV~fi~gDl~e~~ 313 (423) T PRK14966 240 HLVEAVLAR--LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETA--RKNAADL--GARVEFAHGSWFDTD 313 (423) T ss_pred HHHHHhhhc--cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHH--HHHHHHc--CCcEEEEEcchhccc Confidence 455555433 3456799999999999999998876666666666665554444 4433221 125666665332211 Q ss_pred CCCCCCceeEEEEccccccCCc-----------------------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCH Q 019282 248 KFGSGVVYDLIYASAVFLHMPD-----------------------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGG 304 (343) Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~-----------------------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~ 304 (343) ....++||+|+++--+..-.+ .....+++.+.+.|+| ||.+++..+.+ -. T Consensus 314 -l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp-gG~lilEiG~~-----Q~ 386 (423) T PRK14966 314 -MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE-GGFLLLEHGFD-----QG 386 (423) T ss_pred -cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC-CcEEEEEECcc-----HH Confidence 112457999999754311100 0123567777889999 99998876421 26 Q ss_pred HHHHHHHHhcCCcEEEee Q 019282 305 EECTKRLTSLGLEYIGKK 322 (343) Q Consensus 305 ~~l~~~L~~aGf~~v~~~ 322 (343) +.+.+.+++.||..++.. T Consensus 387 e~V~~ll~~~Gf~~v~v~ 404 (423) T PRK14966 387 AAVRGVLAENGFSGVETL 404 (423) T ss_pred HHHHHHHHHCCCcEEEEE Confidence 788999999999876543 No 108 >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed Probab=98.98 E-value=4.8e-09 Score=94.61 Aligned_cols=113 Identities=17% Similarity=0.199 Sum_probs=74.4 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343) ...+...+...+.+.++.+|||||||+|..+..+++.. ..++++|++ +.+.+.++++.. .+.. ++.+..++.. T Consensus 63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~--~~~~~~a~~~~~~~~~~--~v~~~~~d~~ 136 (212) T PRK00312 63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERI--KTLQWEAKRRLKQLGLH--NVSVRHGDGW 136 (212) T ss_pred cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCC--HHHHHHHHHHHHHCCCC--ceEEEECCcc Confidence 34556667777788899999999999999998877753 244455544 455544444332 2331 3555555322 Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) + .+...++||+|++...++++ .+.+.+.|+| ||++++... T Consensus 137 ~--~~~~~~~fD~I~~~~~~~~~--------~~~l~~~L~~-gG~lv~~~~ 176 (212) T PRK00312 137 K--GWPAYAPFDRILVTAAAPEI--------PRALLEQLKE-GGILVAPVG 176 (212) T ss_pred c--CCCcCCCcCEEEEccCchhh--------hHHHHHhcCC-CcEEEEEEc Confidence 1 12234689999998877654 3457889999 999988753 No 109 >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. Probab=98.98 E-value=2e-08 Score=93.29 Aligned_cols=143 Identities=16% Similarity=0.175 Sum_probs=87.4 Q ss_pred HHHHHHHHhcC-CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc Q 019282 168 DVFEFLAEASH-ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343) Q Consensus 168 ~~~~~l~~~~~-l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343) .+++.+..... ..++.+|||+|||+|.++..++...+...++++|+++.....+ +++.... ...++.++..+. T Consensus 72 ~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A--~~N~~~~----~~~~~~~D~~~~ 145 (251) T TIGR03704 72 FLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCA--RRNLADA----GGTVHEGDLYDA 145 (251) T ss_pred HHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHH--HHHHHHc----CCEEEEeechhh Confidence 34444443322 2234589999999999999999876655666666666555544 4332211 123454433221 Q ss_pred CCCCCCCceeEEEEccccc------cCCch------------------HHHHHHHHHHhccCCCCcEEEEEeccccccCC Q 019282 247 TKFGSGVVYDLIYASAVFL------HMPDK------------------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRL 302 (343) Q Consensus 247 ~~~~~~~~fDlIvs~~v~~------hl~~~------------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~ 302 (343) ......+.||+|+++--+. .+++. ....+++.+.++||| ||++++.++.+ T Consensus 146 l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~-gG~l~l~~~~~----- 219 (251) T TIGR03704 146 LPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP-GGHLLVETSER----- 219 (251) T ss_pred cchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC-CCEEEEEECcc----- Confidence 1101135799999985432 11111 123578888899999 99999886422 Q ss_pred CHHHHHHHHHhcCCcEEEee Q 019282 303 GGEECTKRLTSLGLEYIGKK 322 (343) Q Consensus 303 ~~~~l~~~L~~aGf~~v~~~ 322 (343) ..+++...+++.||+..-.. T Consensus 220 ~~~~v~~~l~~~g~~~~~~~ 239 (251) T TIGR03704 220 QAPLAVEAFARAGLIARVAS 239 (251) T ss_pred hHHHHHHHHHHCCCCceeeE Confidence 25678889999999765444 No 110 >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. Probab=98.98 E-value=7.7e-09 Score=94.02 Aligned_cols=153 Identities=20% Similarity=0.252 Sum_probs=101.2 Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHH-hc-ccCCC---------CCCC Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRY-EL-PSQGL---------LHKR 235 (343) Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~-~~-~~~~~---------~~~~ 235 (343) ..+.+.+.. +..+++.+||..|||.|..+..|++ .++.|+++|.++..++.+. +. ..... ...+ T Consensus 24 p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~----~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218) T PF05724_consen 24 PALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAE----QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218) T ss_dssp HHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHH----TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS T ss_pred HHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHH----CCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc Confidence 344454444 5677888999999999999999998 6778888888877776542 11 11110 1123 Q ss_pred cEEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEE-EEEecccc----ccCC--CHHHHH Q 019282 236 PIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRI-FVSHNIKF----CSRL--GGEECT 308 (343) Q Consensus 236 ~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~l-vi~~~~~~----~~~~--~~~~l~ 308 (343) +.+.+++-.++..- ..++||+|+=...|+.+++..+..+.+.+.++|+| ||.+ +++...+. ...+ +.+++. T Consensus 99 i~~~~gDfF~l~~~-~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p-~g~~lLi~l~~~~~~~~GPPf~v~~~ev~ 176 (218) T PF05724_consen 99 ITIYCGDFFELPPE-DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP-GGRGLLITLEYPQGEMEGPPFSVTEEEVR 176 (218) T ss_dssp EEEEES-TTTGGGS-CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE-EEEEEEEEEES-CSCSSSSS----HHHHH T ss_pred eEEEEcccccCChh-hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC-CCcEEEEEEEcCCcCCCCcCCCCCHHHHH Confidence 45566533333311 23579999999999999999999999999999999 9994 44421111 1122 278888 Q ss_pred HHHHhcCCcEEEeeecccc Q 019282 309 KRLTSLGLEYIGKKTHDSL 327 (343) Q Consensus 309 ~~L~~aGf~~v~~~~~~~l 327 (343) +.+. .+|++...+..+.. T Consensus 177 ~l~~-~~f~i~~l~~~~~~ 194 (218) T PF05724_consen 177 ELFG-PGFEIEELEEEDSI 194 (218) T ss_dssp HHHT-TTEEEEEEEEEE-T T ss_pred HHhc-CCcEEEEEeccccc Confidence 8887 89998877664443 No 111 >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] Probab=98.98 E-value=5.6e-08 Score=91.63 Aligned_cols=123 Identities=17% Similarity=0.298 Sum_probs=84.7 Q ss_pred eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEcc Q 019282 184 HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASA 262 (343) Q Consensus 184 rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~ 262 (343) +|||||||+|..++.++...+...++++|+++..+..+..+ .. .++ .+..++.+ .-|... .++||+|+++- T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~N--a~~~~l--~~~~~~~~--dlf~~~--~~~fDlIVsNP 184 (280) T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAREN--AERNGL--VRVLVVQS--DLFEPL--RGKFDLIVSNP 184 (280) T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHH--HHHcCC--ccEEEEee--eccccc--CCceeEEEeCC Confidence 79999999999999999988877888888888777766443 33 333 24444433 113322 35999999973 Q ss_pred ccc-----cCCc------------------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC-CcE Q 019282 263 VFL-----HMPD------------------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG-LEY 318 (343) Q Consensus 263 v~~-----hl~~------------------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG-f~~ 318 (343) -+- +..+ .....++..+.+.|+| ||.+++..+.. ..+.+.+.+.+.| |.. T Consensus 185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~-~g~l~le~g~~-----q~~~v~~~~~~~~~~~~ 258 (280) T COG2890 185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP-GGVLILEIGLT-----QGEAVKALFEDTGFFEI 258 (280) T ss_pred CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC-CcEEEEEECCC-----cHHHHHHHHHhcCCceE Confidence 221 1110 1234678889999999 99999986422 2678999999999 554 Q ss_pred EE Q 019282 319 IG 320 (343) Q Consensus 319 v~ 320 (343) +. T Consensus 259 v~ 260 (280) T COG2890 259 VE 260 (280) T ss_pred EE Confidence 44 No 112 >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... Probab=98.97 E-value=1.9e-09 Score=97.36 Aligned_cols=115 Identities=23% Similarity=0.362 Sum_probs=74.9 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCc-eEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPEN-FHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~-~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343) +..+...+.+.+.++++.+|||||||+|+.+..++....+.+ ++.+++++ ...+.++++.. .+. .++.++.++. T Consensus 57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~--~l~~~A~~~l~~~~~--~nv~~~~gdg 132 (209) T PF01135_consen 57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDP--ELAERARRNLARLGI--DNVEVVVGDG 132 (209) T ss_dssp -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBH--HHHHHHHHHHHHHTT--HSEEEEES-G T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccH--HHHHHHHHHHHHhcc--CceeEEEcch Confidence 456778888889999999999999999999999998765443 44455555 44444444333 333 2566666633 Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) . ..+....+||.|++......+|. .+.+.|++ ||++++-.. T Consensus 133 ~--~g~~~~apfD~I~v~~a~~~ip~--------~l~~qL~~-gGrLV~pi~ 173 (209) T PF01135_consen 133 S--EGWPEEAPFDRIIVTAAVPEIPE--------ALLEQLKP-GGRLVAPIG 173 (209) T ss_dssp G--GTTGGG-SEEEEEESSBBSS--H--------HHHHTEEE-EEEEEEEES T ss_pred h--hccccCCCcCEEEEeeccchHHH--------HHHHhcCC-CcEEEEEEc Confidence 2 22334578999999988866654 36788999 999998643 No 113 >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] Probab=98.95 E-value=1.3e-08 Score=92.94 Aligned_cols=133 Identities=25% Similarity=0.276 Sum_probs=93.3 Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT 247 (343) Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~ 247 (343) ...|....++.||.+|||.|.|+|.++..|+.+..+ ..++..++.... .+.|+++.+ .++.+ ++....+ |.. T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~--~k~A~~Nl~~~~l~d-~v~~~~~---Dv~ 156 (256) T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDF--AKTARENLSEFGLGD-RVTLKLG---DVR 156 (256) T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHH--HHHHHHHHHHhcccc-ceEEEec---ccc Confidence 456777789999999999999999999999987755 455555655544 444454444 35444 4555544 444 Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHHHHHhcCCcEEEe Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTKRLTSLGLEYIGK 321 (343) Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~~L~~aGf~~v~~ 321 (343) +....+.||+|+. .++++.. +++.+++.||| ||.+++-.+ ... .+...+.|++.||..++. T Consensus 157 ~~~~~~~vDav~L-----Dmp~PW~--~le~~~~~Lkp-gg~~~~y~P-----~veQv~kt~~~l~~~g~~~ie~ 218 (256) T COG2519 157 EGIDEEDVDAVFL-----DLPDPWN--VLEHVSDALKP-GGVVVVYSP-----TVEQVEKTVEALRERGFVDIEA 218 (256) T ss_pred ccccccccCEEEE-----cCCChHH--HHHHHHHHhCC-CcEEEEEcC-----CHHHHHHHHHHHHhcCccchhh Confidence 4444558999977 6888866 99999999999 999876431 111 455666788889976553 No 114 >PRK01581 speE spermidine synthase; Validated Probab=98.91 E-value=1.3e-08 Score=98.29 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=91.6 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc------cCCCCCCCcEEEecccCCcCCCCCCC Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP------SQGLLHKRPIIVRGEDMDFTKFGSGV 253 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~------~~~~~~~~~~~~~~~~~dl~~~~~~~ 253 (343) ....+||+||||+|..+..++++.+...++++++|+.....+ ++.. .....+.++.++.+++.++..- ..+ T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelA--r~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-~~~ 225 (374) T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMA--RNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-PSS 225 (374) T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH--HhccccchhccccCCCCceEEEECcHHHHHHh-cCC Confidence 334699999999999998888865556788888887655555 4311 1123345676776655554322 356 Q ss_pred ceeEEEEccccc---cCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeec Q 019282 254 VYDLIYASAVFL---HMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTH 324 (343) Q Consensus 254 ~fDlIvs~~v~~---hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343) .||+|++...-. .........+++.+++.|+| ||++++.....+.....-..+.+.++++|+.+.....+ T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP-gGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~ 298 (374) T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTE-DGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTI 298 (374) T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCC-CcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEe Confidence 899999874221 12223335689999999999 99998764323221111244678899999988765554 No 115 >PRK00811 spermidine synthase; Provisional Probab=98.88 E-value=1.6e-08 Score=95.58 Aligned_cols=135 Identities=17% Similarity=0.172 Sum_probs=83.5 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc---CCC-CCCCcEEEecccCCcCCCCCCCce Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS---QGL-LHKRPIIVRGEDMDFTKFGSGVVY 255 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~---~~~-~~~~~~~~~~~~~dl~~~~~~~~f 255 (343) +.+.+||+||||+|..+..++++.+...++++++|+.....+ ++... .+. .+.++.++.++...+... ..++| T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a--~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~y 151 (283) T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVC--RKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TENSF 151 (283) T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHH--HHHhHHhccccccCCceEEEECchHHHHhh-CCCcc Confidence 345799999999999999998865556778888887665554 33221 122 244666666654444322 35789 Q ss_pred eEEEEccccccCCch--HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE Q 019282 256 DLIYASAVFLHMPDK--LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343) Q Consensus 256 DlIvs~~v~~hl~~~--~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343) |+|++...-.+.+.. ....+++.+++.|+| ||++++.....+........+.+.+++. |..+ T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~-gGvlv~~~~~~~~~~~~~~~i~~tl~~~-F~~v 215 (283) T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKE-DGIFVAQSGSPFYQADEIKDMHRKLKEV-FPIV 215 (283) T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcCC-CcEEEEeCCCcccCHHHHHHHHHHHHHH-CCCE Confidence 999986544332222 224588999999999 9999876432222111133344455555 4433 No 116 >PRK13256 thiopurine S-methyltransferase; Reviewed Probab=98.87 E-value=2.8e-08 Score=90.62 Aligned_cols=139 Identities=13% Similarity=0.121 Sum_probs=92.6 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc-------c----CCCCCCCcEEEecccCC Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP-------S----QGLLHKRPIIVRGEDMD 245 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~-------~----~~~~~~~~~~~~~~~~d 245 (343) +.+.++.+||+.|||.|..+.+|+. .++.|+++|.++..++.+.+.. . .......+.+.+++-.+ T Consensus 39 l~~~~~~rvLvPgCGkg~D~~~LA~----~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~ 114 (226) T PRK13256 39 LNINDSSVCLIPMCGCSIDMLFFLS----KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN 114 (226) T ss_pred cCCCCCCeEEEeCCCChHHHHHHHh----CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC Confidence 4455678999999999999999998 5666777777766665442210 0 00112245666664444 Q ss_pred cCCC-CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe-cccc---ccCC--CHHHHHHHHHhc-CCc Q 019282 246 FTKF-GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH-NIKF---CSRL--GGEECTKRLTSL-GLE 317 (343) Q Consensus 246 l~~~-~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~-~~~~---~~~~--~~~~l~~~L~~a-Gf~ 317 (343) +... ...+.||+|+-...|+++++..+..+.+.+.++|+| ||.+++.. ..+. ...+ +.+++.+.+... .++ T Consensus 115 l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p-gg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~ 193 (226) T PRK13256 115 LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN-NTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFE 193 (226) T ss_pred CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC-CcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEE Confidence 4311 123589999999999999999999999999999999 99986542 1111 1122 277888777532 344 Q ss_pred EEE Q 019282 318 YIG 320 (343) Q Consensus 318 ~v~ 320 (343) .+. T Consensus 194 ~l~ 196 (226) T PRK13256 194 LID 196 (226) T ss_pred Eee Confidence 443 No 117 >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Probab=98.87 E-value=3e-08 Score=76.35 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=68.5 Q ss_pred eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEccc Q 019282 184 HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAV 263 (343) Q Consensus 184 rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v 263 (343) +|||+|||+|..+..++. .....++++|++........ +..... ......++..+..+... ...+.||+|++..+ T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~~ 75 (107) T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELAR--KAAAAL-LADNVEVLKGDAEELPP-EADESFDVIISDPP 75 (107) T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHH--HHHhcc-cccceEEEEcChhhhcc-ccCCceEEEEEccc Confidence 589999999999998887 44556667776665544443 111111 22244555543333331 13568999999999 Q ss_pred cccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 264 FLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 264 ~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +++. ......+++.+.+.|+| ||.+++. T Consensus 76 ~~~~-~~~~~~~l~~~~~~l~~-~g~~~~~ 103 (107) T cd02440 76 LHHL-VEDLARFLEEARRLLKP-GGVLVLT 103 (107) T ss_pred eeeh-hhHHHHHHHHHHHHcCC-CCEEEEE Confidence 9874 23344589999999999 9999875 No 118 >PRK03612 spermidine synthase; Provisional Probab=98.87 E-value=2e-08 Score=102.55 Aligned_cols=135 Identities=18% Similarity=0.172 Sum_probs=87.1 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc---c---CCCCCCCcEEEecccCCcCCCCCCC Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP---S---QGLLHKRPIIVRGEDMDFTKFGSGV 253 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~---~---~~~~~~~~~~~~~~~~dl~~~~~~~ 253 (343) +++.+|||||||+|..+..++++.+...++++|+|+.....+ ++.. . ....++++.++.++..++... .++ T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~a--r~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~-~~~ 372 (521) T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELA--RTSPALRALNGGALDDPRVTVVNDDAFNWLRK-LAE 372 (521) T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHH--HhCCcchhhhccccCCCceEEEEChHHHHHHh-CCC Confidence 456799999999999999988753326778888877655554 4321 1 112334666666654443322 246 Q ss_pred ceeEEEEccccccCCc---hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcE Q 019282 254 VYDLIYASAVFLHMPD---KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEY 318 (343) Q Consensus 254 ~fDlIvs~~v~~hl~~---~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~ 318 (343) +||+|++.......+. ....++++.+++.||| ||.+++.....+.....-.++.+.+++.||.+ T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p-gG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521) T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP-DGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521) T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCC-CeEEEEecCCcccchHHHHHHHHHHHHcCCEE Confidence 8999999754433221 1123488999999999 99998875333322112456788899999943 No 119 >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed Probab=98.87 E-value=2.3e-08 Score=100.17 Aligned_cols=150 Identities=16% Similarity=0.121 Sum_probs=95.1 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343) .+.+++.+.+.+.+.++.+|||+|||+|.++..+++.. . .++++|.+..+.+.++++.. .+. . ++.++.++.. T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~--~--~V~gvD~s~~al~~A~~n~~~~~~-~-~v~~~~~d~~ 355 (443) T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA--A--EVVGVEGVEAMVERARENARRNGL-D-NVTFYHANLE 355 (443) T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC--C--EEEEEeCCHHHHHHHHHHHHHcCC-C-ceEEEEeChH Confidence 35566777776777788999999999999999998853 3 35555555555555554433 232 2 4666666443 Q ss_pred CcC-CCC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee Q 019282 245 DFT-KFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343) Q Consensus 245 dl~-~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343) +.. ... .+++||+|++.--..- ....++.+.+ ++| ++.+|++.+..-. ..++. .|.+.||++.+.+ T Consensus 356 ~~l~~~~~~~~~fD~Vi~dPPr~g-----~~~~~~~l~~-~~~-~~ivyvSCnp~tl----aRDl~-~L~~~gY~l~~i~ 423 (443) T PRK13168 356 EDFTDQPWALGGFDKVLLDPPRAG-----AAEVMQALAK-LGP-KRIVYVSCNPATL----ARDAG-VLVEAGYRLKRAG 423 (443) T ss_pred HhhhhhhhhcCCCCEEEECcCCcC-----hHHHHHHHHh-cCC-CeEEEEEeChHHh----hccHH-HHhhCCcEEEEEE Confidence 321 111 2457999988543321 1235566655 689 8999988532211 22232 4567899999999 Q ss_pred eccccccc-hhH Q 019282 323 THDSLLFN-HYE 333 (343) Q Consensus 323 ~~~~l~~~-~~e 333 (343) ..|.+|.. |.| T Consensus 424 ~~DmFP~T~HvE 435 (443) T PRK13168 424 MLDMFPHTGHVE 435 (443) T ss_pred EeccCCCCCcEE Confidence 99999974 455 No 120 >TIGR00438 rrmJ cell division protein FtsJ. Probab=98.86 E-value=2.2e-08 Score=88.71 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=76.9 Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343) Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343) +.+...+...++++.+|||+|||+|.++..+++... ...++++|+++ .+ . .. .+.++.++..+.. T Consensus 20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~--~~-----~-----~~--~i~~~~~d~~~~~ 85 (188) T TIGR00438 20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP--MK-----P-----IE--NVDFIRGDFTDEE 85 (188) T ss_pred HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccc--cc-----c-----CC--CceEEEeeCCChh Confidence 334444446678899999999999999999988663 33455666554 22 0 11 2334433222211 Q ss_pred ------CCCCCCceeEEEEccccc--------cCCc-hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHH Q 019282 248 ------KFGSGVVYDLIYASAVFL--------HMPD-KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLT 312 (343) Q Consensus 248 ------~~~~~~~fDlIvs~~v~~--------hl~~-~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~ 312 (343) .....+.||+|++....+ |... ......+..++++|+| ||++++... ......++...++ T Consensus 86 ~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lvi~~~----~~~~~~~~l~~l~ 160 (188) T TIGR00438 86 VLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKP-KGNFVVKVF----QGEEIDEYLNELR 160 (188) T ss_pred HHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccC-CCEEEEEEc----cCccHHHHHHHHH Confidence 011345799999865422 1111 1234589999999999 999998631 1112344545554 Q ss_pred hcCCcEEE Q 019282 313 SLGLEYIG 320 (343) Q Consensus 313 ~aGf~~v~ 320 (343) . +|..+. T Consensus 161 ~-~~~~~~ 167 (188) T TIGR00438 161 K-LFEKVK 167 (188) T ss_pred h-hhceEE Confidence 4 364443 No 121 >PRK10901 16S rRNA methyltransferase B; Provisional Probab=98.86 E-value=7.9e-08 Score=95.91 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=91.7 Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEE Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPII 238 (343) Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~ 238 (343) .+.+..+..-...+...+.+.++.+|||+|||+|..+..+++..+...++++|+++ .+.+.++++.. .+. .+.+ T Consensus 223 ~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~--~~l~~~~~n~~~~g~---~~~~ 297 (427) T PRK10901 223 EGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDA--QRLERVRENLQRLGL---KATV 297 (427) T ss_pred CceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHHHHHcCC---CeEE Confidence 44444454444455555678889999999999999999999876544445555554 44444444333 233 2345 Q ss_pred EecccCCcCCCCCCCceeEEEEcccc------ccCC------ch--------HHHHHHHHHHhccCCCCcEEEEEecccc Q 019282 239 VRGEDMDFTKFGSGVVYDLIYASAVF------LHMP------DK--------LVWVGLERLASKLRPYDGRIFVSHNIKF 298 (343) Q Consensus 239 ~~~~~~dl~~~~~~~~fDlIvs~~v~------~hl~------~~--------~~~~~L~~l~r~LkP~GG~lvi~~~~~~ 298 (343) +.++..++......++||.|++.... .+-+ .+ ....+|..+.+.||| ||+++++.- .+ T Consensus 298 ~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp-GG~lvystc-s~ 375 (427) T PRK10901 298 IVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP-GGTLLYATC-SI 375 (427) T ss_pred EEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeC-CC Confidence 55544333222224679999954321 1111 11 123589999999999 999987641 11 Q ss_pred ccCCCHHHHHHHHHhc-CCcEEE Q 019282 299 CSRLGGEECTKRLTSL-GLEYIG 320 (343) Q Consensus 299 ~~~~~~~~l~~~L~~a-Gf~~v~ 320 (343) ...-+.+.+...++++ +|+.+. T Consensus 376 ~~~Ene~~v~~~l~~~~~~~~~~ 398 (427) T PRK10901 376 LPEENEQQIKAFLARHPDAELLD 398 (427) T ss_pred ChhhCHHHHHHHHHhCCCCEEec Confidence 1122356677777765 676554 No 122 >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... Probab=98.86 E-value=2.7e-08 Score=91.41 Aligned_cols=109 Identities=22% Similarity=0.253 Sum_probs=82.3 Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG 250 (343) Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~ 250 (343) ..+.......+..+|||||+|+|.++..+++.+|...+++.|+.. ....+++ ..++.++.+ |+.+- T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~---v~~~~~~-------~~rv~~~~g---d~f~~- 155 (241) T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPE---VIEQAKE-------ADRVEFVPG---DFFDP- 155 (241) T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HH---HHCCHHH-------TTTEEEEES----TTTC- T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHh---hhhcccc-------ccccccccc---cHHhh- Confidence 455666778878899999999999999999999988777777532 2232222 337777766 44322 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCC--cEEEEEec Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYD--GRIFVSHN 295 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~G--G~lvi~~~ 295 (343) ... +|+|+..+++|+.+++....+|+++++.|+| | |+|+|... T Consensus 156 ~P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p-g~~g~llI~e~ 200 (241) T PF00891_consen 156 LPV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKP-GKDGRLLIIEM 200 (241) T ss_dssp CSS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEE-CTTEEEEEEEE T ss_pred hcc-ccceeeehhhhhcchHHHHHHHHHHHHHhCC-CCCCeEEEEee Confidence 233 9999999999999999999999999999999 9 99998753 No 123 >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. Probab=98.84 E-value=4.3e-08 Score=97.77 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=92.4 Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEE Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPII 238 (343) Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~ 238 (343) .+.|..+..-...+...+.+.++.+|||+|||+|..+.++++..+...++++|++. .+...++++.+ .+.. ..+.. T Consensus 217 ~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~--~~l~~~~~n~~r~g~~-~~v~~ 293 (426) T TIGR00563 217 EGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHE--HRLKRVYENLKRLGLT-IKAET 293 (426) T ss_pred CCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCH--HHHHHHHHHHHHcCCC-eEEEE Confidence 44454555555566666788889999999999999999999877644455555555 44444443332 3432 12223 Q ss_pred EecccCCcCCCCCCCceeEEEEc------cccccCCch--------------HHHHHHHHHHhccCCCCcEEEEEecccc Q 019282 239 VRGEDMDFTKFGSGVVYDLIYAS------AVFLHMPDK--------------LVWVGLERLASKLRPYDGRIFVSHNIKF 298 (343) Q Consensus 239 ~~~~~~dl~~~~~~~~fDlIvs~------~v~~hl~~~--------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~ 298 (343) ..++......+...++||.|++. +++++.++- ....+|.++.++||| ||+++++.- .. T Consensus 294 ~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp-gG~lvystc-s~ 371 (426) T TIGR00563 294 KDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT-GGTLVYATC-SV 371 (426) T ss_pred eccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeC-CC Confidence 43332222211135689999953 455554441 124589999999999 999987631 01 Q ss_pred ccCCCHHHHHHHHHhc-CCc Q 019282 299 CSRLGGEECTKRLTSL-GLE 317 (343) Q Consensus 299 ~~~~~~~~l~~~L~~a-Gf~ 317 (343) ...-+++.+...+++. +|+ T Consensus 372 ~~~Ene~~v~~~l~~~~~~~ 391 (426) T TIGR00563 372 LPEENSEQIKAFLQEHPDFP 391 (426) T ss_pred ChhhCHHHHHHHHHhCCCCe Confidence 1111256666777766 454 No 124 >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional Probab=98.84 E-value=2.2e-08 Score=96.11 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=73.7 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCC-ceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPE-NFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~-~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343) ...+...+.+.++++++.+|||||||+|.++..+++..+.. .++++|+++ .+.+.+++... .+. .++.++.++. T Consensus 65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~--~~l~~Ar~~l~~~g~--~nV~~i~gD~ 140 (322) T PRK13943 65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR--KICEIAKRNVRRLGI--ENVIFVCGDG 140 (322) T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCH--HHHHHHHHHHHHcCC--CcEEEEeCCh Confidence 34466667777788889999999999999999999866532 344555554 44444444322 233 2455665533 Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .+.. ...++||+|++.....+++ ..+.+.|+| ||++++. T Consensus 141 ~~~~--~~~~~fD~Ii~~~g~~~ip--------~~~~~~Lkp-gG~Lvv~ 179 (322) T PRK13943 141 YYGV--PEFAPYDVIFVTVGVDEVP--------ETWFTQLKE-GGRVIVP 179 (322) T ss_pred hhcc--cccCCccEEEECCchHHhH--------HHHHHhcCC-CCEEEEE Confidence 2222 1235799999976654433 346789999 9998874 No 125 >PRK14901 16S rRNA methyltransferase B; Provisional Probab=98.82 E-value=7.7e-08 Score=96.19 Aligned_cols=156 Identities=14% Similarity=0.122 Sum_probs=95.3 Q ss_pred ccCCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCC Q 019282 158 NYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKR 235 (343) Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~ 235 (343) |..+.+..+......+...+...++.+|||+|||+|..+.++++..++ ..++++|++. .+...++++.. .|.. + T Consensus 229 f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~--~rl~~~~~n~~r~g~~--~ 304 (434) T PRK14901 229 YEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSA--SRLKKLQENAQRLGLK--S 304 (434) T ss_pred HhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCH--HHHHHHHHHHHHcCCC--e Confidence 344445555555555655677888999999999999999999987643 3445555544 44444443333 3332 3 Q ss_pred cEEEecccCCcCCC--CCCCceeEEEEc------cccccCCchH--------------HHHHHHHHHhccCCCCcEEEEE Q 019282 236 PIIVRGEDMDFTKF--GSGVVYDLIYAS------AVFLHMPDKL--------------VWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 236 ~~~~~~~~~dl~~~--~~~~~fDlIvs~------~v~~hl~~~~--------------~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +.++.++..++... ...+.||.|++. .++++-++.. ...+|.++.+.||| ||+++.+ T Consensus 305 v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp-gG~lvys 383 (434) T PRK14901 305 IKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP-GGTLVYA 383 (434) T ss_pred EEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEE Confidence 55665544433311 124689999963 3554444321 24689999999999 9999876 Q ss_pred eccccccCCCHHHHHHHHHhc-CCcEE Q 019282 294 HNIKFCSRLGGEECTKRLTSL-GLEYI 319 (343) Q Consensus 294 ~~~~~~~~~~~~~l~~~L~~a-Gf~~v 319 (343) .-. ....-..+.+...+++. +|+.. T Consensus 384 tcs-i~~~Ene~~v~~~l~~~~~~~~~ 409 (434) T PRK14901 384 TCT-LHPAENEAQIEQFLARHPDWKLE 409 (434) T ss_pred eCC-CChhhHHHHHHHHHHhCCCcEec Confidence 310 11111256677777776 57644 No 126 >PRK04457 spermidine synthase; Provisional Probab=98.82 E-value=3.7e-08 Score=92.04 Aligned_cols=110 Identities=16% Similarity=0.166 Sum_probs=74.1 Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343) Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343) .+++.+|||||||+|.++..+++..+...++++++|+.....+ ++.........++.++.++..++..- ..++||+| T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A--~~~f~~~~~~~rv~v~~~Da~~~l~~-~~~~yD~I 140 (262) T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVA--RNHFELPENGERFEVIEADGAEYIAV-HRHSTDVI 140 (262) T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHH--HHHcCCCCCCCceEEEECCHHHHHHh-CCCCCCEE Confidence 3456789999999999999999888877788888887665554 44332111223566666654443211 24689999 Q ss_pred EEcccccc--CCc-hHHHHHHHHHHhccCCCCcEEEEE Q 019282 259 YASAVFLH--MPD-KLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 259 vs~~v~~h--l~~-~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ++.. ++. .+. .....++++++++|+| ||++++. T Consensus 141 ~~D~-~~~~~~~~~l~t~efl~~~~~~L~p-gGvlvin 176 (262) T PRK04457 141 LVDG-FDGEGIIDALCTQPFFDDCRNALSS-DGIFVVN 176 (262) T ss_pred EEeC-CCCCCCccccCcHHHHHHHHHhcCC-CcEEEEE Confidence 9753 221 111 1124589999999999 9999986 No 127 >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. Probab=98.81 E-value=8.2e-08 Score=88.25 Aligned_cols=125 Identities=16% Similarity=0.227 Sum_probs=85.2 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343) ...++||||.|.|..+..++..+. .+++++++..+ ...-+ +.|+ .+... .+..+ .+.+||+|.| T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~M--r~rL~---~kg~---~vl~~----~~w~~--~~~~fDvIsc 157 (265) T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPM--RWRLS---KKGF---TVLDI----DDWQQ--TDFKFDVISC 157 (265) T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHH--HHHHH---hCCC---eEEeh----hhhhc--cCCceEEEee Confidence 356899999999999999998774 46777766544 33222 2233 22111 22221 3468999999 Q ss_pred ccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc-----------------ccCCC------HHHHHHHHHhcCCc Q 019282 261 SAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF-----------------CSRLG------GEECTKRLTSLGLE 317 (343) Q Consensus 261 ~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~-----------------~~~~~------~~~l~~~L~~aGf~ 317 (343) .+++....++.. .|+.+++.|+| +|+++++.-.+| ....+ ...+.+.++.+||+ T Consensus 158 LNvLDRc~~P~~--LL~~i~~~l~p-~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~ 234 (265) T PF05219_consen 158 LNVLDRCDRPLT--LLRDIRRALKP-NGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFE 234 (265) T ss_pred hhhhhccCCHHH--HHHHHHHHhCC-CCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCE Confidence 999999888876 99999999999 999988721111 01111 34455778999999 Q ss_pred EEEeeec Q 019282 318 YIGKKTH 324 (343) Q Consensus 318 ~v~~~~~ 324 (343) ++.-... T Consensus 235 v~~~tr~ 241 (265) T PF05219_consen 235 VERWTRL 241 (265) T ss_pred EEEEecc Confidence 8875543 No 128 >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. Probab=98.80 E-value=7.8e-08 Score=88.82 Aligned_cols=136 Identities=19% Similarity=0.255 Sum_probs=87.9 Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCC-ceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC-- Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPE-NFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD-- 245 (343) Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~-~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d-- 245 (343) +..|...+++.||.+|||.|.|+|.++..|++...+. .++-.++ .......|++..+ .++ ..++.+...+... T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~--~~~~~~~A~~n~~~~gl-~~~v~~~~~Dv~~~g 105 (247) T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEF--REDRAEKARKNFERHGL-DDNVTVHHRDVCEEG 105 (247) T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEES--SHHHHHHHHHHHHHTTC-CTTEEEEES-GGCG- T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEcccc--CHHHHHHHHHHHHHcCC-CCCceeEecceeccc Confidence 4567777999999999999999999999999887543 3444444 4455555554444 444 4466666654321 Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhcc-CCCCcEEEEEeccccccCCC-HHHHHHHHHhcCCcEEEee Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKL-RPYDGRIFVSHNIKFCSRLG-GEECTKRLTSLGLEYIGKK 322 (343) Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~L-kP~GG~lvi~~~~~~~~~~~-~~~l~~~L~~aGf~~v~~~ 322 (343) +. -..+..+|.|+. .+|++.. ++..+.++| || ||++++-.+ ... .....+.|++.||..++.. T Consensus 106 ~~-~~~~~~~DavfL-----Dlp~Pw~--~i~~~~~~L~~~-gG~i~~fsP-----~ieQv~~~~~~L~~~gf~~i~~~ 170 (247) T PF08704_consen 106 FD-EELESDFDAVFL-----DLPDPWE--AIPHAKRALKKP-GGRICCFSP-----CIEQVQKTVEALREHGFTDIETV 170 (247) T ss_dssp -S-TT-TTSEEEEEE-----ESSSGGG--GHHHHHHHE-EE-EEEEEEEES-----SHHHHHHHHHHHHHTTEEEEEEE T ss_pred cc-ccccCcccEEEE-----eCCCHHH--HHHHHHHHHhcC-CceEEEECC-----CHHHHHHHHHHHHHCCCeeeEEE Confidence 21 112467999876 7888876 999999999 89 998876431 111 4556778889999887644 No 129 >PLN02366 spermidine synthase Probab=98.80 E-value=6.7e-08 Score=92.22 Aligned_cols=137 Identities=18% Similarity=0.121 Sum_probs=85.4 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc-c--CCCCCCCcEEEecccCCcCCCCCCCcee Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP-S--QGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~-~--~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343) ++..+||+||||.|..+..++++.+..+++++++|+.....+ ++.. . .+..+.++.++.++...+..-..++.|| T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~a--r~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308) T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVS--KKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308) T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHH--HHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC Confidence 456799999999999999998864446778888887555544 3322 1 2334557777776544432211246899 Q ss_pred EEEEccccccCCch--HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE Q 019282 257 LIYASAVFLHMPDK--LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343) Q Consensus 257 lIvs~~v~~hl~~~--~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343) +|++...-.+.+.. ....+++.++++|+| ||+++......+........+.+.+.+.....+ T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~p-gGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v 231 (308) T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRP-GGVVCTQAESMWLHMDLIEDLIAICRETFKGSV 231 (308) T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCC-CcEEEECcCCcccchHHHHHHHHHHHHHCCCce Confidence 99986544332221 234589999999999 999976543233221113344555655543333 No 130 >PLN02781 Probable caffeoyl-CoA O-methyltransferase Probab=98.78 E-value=3.3e-08 Score=90.89 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=71.8 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC-CC---C Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT-KF---G 250 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~-~~---~ 250 (343) ....+..+|||||||+|..+..++...+. ..++.+|+++ ...+.++++.+ .++. .++.++.++..+.. .+ . T Consensus 64 ~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~--~~~~~A~~n~~~~gl~-~~i~~~~gda~~~L~~l~~~~ 140 (234) T PLN02781 64 VKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDK--EAYEVGLEFIKKAGVD-HKINFIQSDALSALDQLLNND 140 (234) T ss_pred HHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHHhCC Confidence 34556779999999999999999887653 4455555555 44454555433 4443 46777777554431 11 1 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ..++||+|+.... .+....+++.+.++|+| ||.+++. T Consensus 141 ~~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~-GG~ii~d 177 (234) T PLN02781 141 PKPEFDFAFVDAD-----KPNYVHFHEQLLKLVKV-GGIIAFD 177 (234) T ss_pred CCCCCCEEEECCC-----HHHHHHHHHHHHHhcCC-CeEEEEE Confidence 2468999988532 23344589999999999 9988764 No 131 >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. Probab=98.77 E-value=1.4e-07 Score=87.87 Aligned_cols=141 Identities=17% Similarity=0.212 Sum_probs=100.6 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCC--CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCC-CCcee Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNP--ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGS-GVVYD 256 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~--~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~-~~~fD 256 (343) ....+||||.||.|+..+......+. ..+...|.++ ...+..++..++....+...+.++++.|...+.. +-..+ T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~--~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311) T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSP--INVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311) T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCH--HHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC Confidence 45679999999999999998887775 4555566555 4444445554433334355788888777665542 34579 Q ss_pred EEEEccccccCCchH-HHHHHHHHHhccCCCCcEEEEEe---c----------------cccc-cCCCHHHHHHHHHhcC Q 019282 257 LIYASAVFLHMPDKL-VWVGLERLASKLRPYDGRIFVSH---N----------------IKFC-SRLGGEECTKRLTSLG 315 (343) Q Consensus 257 lIvs~~v~~hl~~~~-~~~~L~~l~r~LkP~GG~lvi~~---~----------------~~~~-~~~~~~~l~~~L~~aG 315 (343) +++.+.+++.+++.. ....|.-+.+++.| ||+++.+. + .++. ++.+..++.++.+++| T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~p-gG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aG 290 (311) T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEP-GGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAG 290 (311) T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCC-CcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcC Confidence 999999999999865 44579999999999 99999872 1 1111 2223889999999999 Q ss_pred CcEEEeee Q 019282 316 LEYIGKKT 323 (343) Q Consensus 316 f~~v~~~~ 323 (343) |+-+.... T Consensus 291 F~K~~q~I 298 (311) T PF12147_consen 291 FEKIDQRI 298 (311) T ss_pred Cchhhhee Confidence 98655443 No 132 >PLN02232 ubiquinone biosynthesis methyltransferase Probab=98.76 E-value=5.1e-08 Score=84.32 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=71.7 Q ss_pred EcChhHHHHHHHHhccc-CC-CCCCCcEEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcE Q 019282 212 ERDELSLMAAFRYELPS-QG-LLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGR 289 (343) Q Consensus 212 did~s~~~~a~a~~~~~-~~-~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~ 289 (343) ++|.+..|.+.++++.. .+ ....++.++.++..+++ + .+++||+|++..+++++++... .|++++|+||| ||. T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~-~~~~fD~v~~~~~l~~~~d~~~--~l~ei~rvLkp-GG~ 76 (160) T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-F-DDCEFDAVTMGYGLRNVVDRLR--AMKEMYRVLKP-GSR 76 (160) T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-C-CCCCeeEEEecchhhcCCCHHH--HHHHHHHHcCc-CeE Confidence 34555555555543221 11 11225677777666665 3 3678999999999999988765 99999999999 999 Q ss_pred EEEEeccc------------------------------c-------ccCCCHHHHHHHHHhcCCcEEEee Q 019282 290 IFVSHNIK------------------------------F-------CSRLGGEECTKRLTSLGLEYIGKK 322 (343) Q Consensus 290 lvi~~~~~------------------------------~-------~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343) +++.+... + .....++++.++|+++||+.+... T Consensus 77 l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160) T PLN02232 77 VSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160) T ss_pred EEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE Confidence 98762110 0 011238899999999999987644 No 133 >PRK14902 16S rRNA methyltransferase B; Provisional Probab=98.76 E-value=1.2e-07 Score=94.97 Aligned_cols=155 Identities=17% Similarity=0.056 Sum_probs=90.7 Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-CCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcE Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-NPENFHCLERDELSLMAAFRYELPS-QGLLHKRPI 237 (343) Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~ 237 (343) .+.+..++.-...+...+.+.++.+|||+|||+|..+..+++.. +...++++|++.. +...++++.+ .+. . .+. T Consensus 229 ~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~--~l~~~~~n~~~~g~-~-~v~ 304 (444) T PRK14902 229 DGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEH--KLKLIEENAKRLGL-T-NIE 304 (444) T ss_pred CceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHHcCC-C-eEE Confidence 34343444444445555677888999999999999999999876 3344555555554 4444444333 333 2 355 Q ss_pred EEecccCCcCCCCCCCceeEEEEccc------cccCCch--------------HHHHHHHHHHhccCCCCcEEEEEeccc Q 019282 238 IVRGEDMDFTKFGSGVVYDLIYASAV------FLHMPDK--------------LVWVGLERLASKLRPYDGRIFVSHNIK 297 (343) Q Consensus 238 ~~~~~~~dl~~~~~~~~fDlIvs~~v------~~hl~~~--------------~~~~~L~~l~r~LkP~GG~lvi~~~~~ 297 (343) ++.++..++... ..+.||+|++..- +.+-++. ....+|+.+.++||| ||.++.+.-.- T Consensus 305 ~~~~D~~~~~~~-~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp-GG~lvystcs~ 382 (444) T PRK14902 305 TKALDARKVHEK-FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK-GGILVYSTCTI 382 (444) T ss_pred EEeCCcccccch-hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC-CCEEEEEcCCC Confidence 665544333211 1268999997532 2221111 113579999999999 99998653111 Q ss_pred cccCCCHHHHHHHHHhc-CCcEEEe Q 019282 298 FCSRLGGEECTKRLTSL-GLEYIGK 321 (343) Q Consensus 298 ~~~~~~~~~l~~~L~~a-Gf~~v~~ 321 (343) + ..-....+...+++. +|+.+.. T Consensus 383 ~-~~Ene~vv~~~l~~~~~~~~~~~ 406 (444) T PRK14902 383 E-KEENEEVIEAFLEEHPEFELVPL 406 (444) T ss_pred C-hhhhHHHHHHHHHhCCCcEEecc Confidence 1 111245566667766 4776553 No 134 >TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. Probab=98.76 E-value=8.6e-08 Score=89.92 Aligned_cols=110 Identities=19% Similarity=0.133 Sum_probs=69.9 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc-cC--CCCCCCcEEEecccCCcCCCCCCCceeE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP-SQ--GLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~-~~--~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343) .+.+||+||||+|.++..+++..+...++++++|+.....+ ++.. .. ...+.++.++.++...+... ..++||+ T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a--~~~~~~~~~~~~~~~v~i~~~D~~~~l~~-~~~~yDv 148 (270) T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELS--KKFLPSLAGSYDDPRVDLQIDDGFKFLAD-TENTFDV 148 (270) T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHH--HHHhHhhcccccCCceEEEECchHHHHHh-CCCCccE Confidence 34599999999999999888765456678888887655444 3321 11 12223444444432222211 2468999 Q ss_pred EEEccccccCCchH--HHHHHHHHHhccCCCCcEEEEEe Q 019282 258 IYASAVFLHMPDKL--VWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 258 Ivs~~v~~hl~~~~--~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) |++......-+... ...+++.+++.|+| ||++++.. T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~p-gG~lv~~~ 186 (270) T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNE-DGIFVAQS 186 (270) T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCC-CcEEEEcC Confidence 99865532222211 34589999999999 99998864 No 135 >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. Probab=98.73 E-value=6.5e-08 Score=93.19 Aligned_cols=111 Identities=13% Similarity=0.146 Sum_probs=67.8 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc-cCCCCC------CCcEEEecccCC--cCC-CC Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP-SQGLLH------KRPIIVRGEDMD--FTK-FG 250 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~-~~~~~~------~~~~~~~~~~~d--l~~-~~ 250 (343) ++.+|||+|||-|+.+...... ....+.++|++...+..+..+-.. ..+... -...++.++... +.+ +. T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331) T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331) T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc Confidence 7789999999999887777653 345677788777776665443200 011000 022344442221 111 22 Q ss_pred C-CCceeEEEEccccccC--CchHHHHHHHHHHhccCCCCcEEEEE Q 019282 251 S-GVVYDLIYASAVFLHM--PDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~-~~~fDlIvs~~v~~hl--~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) . ...||+|.|.+.+|+. .......+|+.+.+.|+| ||+++.+ T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~-GG~FIgT 185 (331) T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP-GGYFIGT 185 (331) T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE-EEEEEEE T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCEEEEE Confidence 2 2599999999999987 445566799999999999 9999987 No 136 >KOG3010 consensus Methyltransferase [General function prediction only] Probab=98.71 E-value=1e-07 Score=86.39 Aligned_cols=106 Identities=16% Similarity=0.142 Sum_probs=68.3 Q ss_pred CCCCCC-eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCcee Q 019282 178 HITPNS-HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343) Q Consensus 178 ~l~~~~-rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343) ...++. .++|+|||+|..++.++.++. . ++++|.+..|...+++................+..++.. .+++.| T Consensus 29 ~~~~~h~~a~DvG~G~Gqa~~~iae~~k--~--VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g--~e~SVD 102 (261) T KOG3010|consen 29 SRTEGHRLAWDVGTGNGQAARGIAEHYK--E--VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG--GEESVD 102 (261) T ss_pred hhCCCcceEEEeccCCCcchHHHHHhhh--h--heeecCCHHHHHHhhcCCCcccccCCccccccccccccC--CCccee Confidence 334444 799999999988888888653 3 555555556666555543322222222333222233332 368999 Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +|++...+|++.-+. +++.++|+||+ +|-++.. T Consensus 103 lI~~Aqa~HWFdle~---fy~~~~rvLRk-~Gg~iav 135 (261) T KOG3010|consen 103 LITAAQAVHWFDLER---FYKEAYRVLRK-DGGLIAV 135 (261) T ss_pred eehhhhhHHhhchHH---HHHHHHHHcCC-CCCEEEE Confidence 999999998886543 79999999999 7744333 No 137 >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed Probab=98.70 E-value=1.1e-07 Score=91.19 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=88.6 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343) ...+++.+.+.+...++.+|||+|||+|.++..++.. +..++++|.+..+.+.+++... .+. .++.++.++.. T Consensus 158 ~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~----~~~V~gvD~s~~av~~A~~n~~~~~l--~~v~~~~~D~~ 231 (315) T PRK03522 158 AAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP----GMQLTGIEISAEAIACAKQSAAELGL--TNVQFQALDST 231 (315) T ss_pred HHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc----CCEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEEcCHH Confidence 3445555544444335689999999999999999883 2345555555555555554433 333 25667776544 Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeec Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTH 324 (343) Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343) ++... ..+.||+|++.---.-+.. .+++. ...++| ++.++++.+.... ..++.. | .||+....+.. T Consensus 232 ~~~~~-~~~~~D~Vv~dPPr~G~~~----~~~~~-l~~~~~-~~ivyvsc~p~t~----~rd~~~-l--~~y~~~~~~~~ 297 (315) T PRK03522 232 QFATA-QGEVPDLVLVNPPRRGIGK----ELCDY-LSQMAP-RFILYSSCNAQTM----AKDLAH-L--PGYRIERVQLF 297 (315) T ss_pred HHHHh-cCCCCeEEEECCCCCCccH----HHHHH-HHHcCC-CeEEEEECCcccc----hhHHhh-c--cCcEEEEEEEe Confidence 43311 2357999998733211111 13333 344788 8888887542221 334443 3 69999999999 Q ss_pred cccccc-hhH Q 019282 325 DSLLFN-HYE 333 (343) Q Consensus 325 ~~l~~~-~~e 333 (343) |.+|.. |.| T Consensus 298 DmFP~T~HvE 307 (315) T PRK03522 298 DMFPHTAHYE 307 (315) T ss_pred ccCCCCCeEE Confidence 999974 454 No 138 >PRK14903 16S rRNA methyltransferase B; Provisional Probab=98.67 E-value=1.5e-07 Score=93.90 Aligned_cols=156 Identities=10% Similarity=0.032 Sum_probs=91.7 Q ss_pred ccCCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCC Q 019282 158 NYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKR 235 (343) Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~ 235 (343) |..+.+..+......+...+.+.++.+|||+|||+|..+.+++...++ ..++++|++. .+.+..+++.+ .+. . + T Consensus 214 ~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~--~rl~~~~~n~~r~g~-~-~ 289 (431) T PRK14903 214 IKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISR--EKIQLVEKHAKRLKL-S-S 289 (431) T ss_pred HHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHHHHcCC-C-e Confidence 334444444444444444567888999999999999999999987643 3455555555 44444444333 333 2 3 Q ss_pred cEEEecccCCcCCCCCCCceeEEEEcc------ccccCCch--------------HHHHHHHHHHhccCCCCcEEEEEec Q 019282 236 PIIVRGEDMDFTKFGSGVVYDLIYASA------VFLHMPDK--------------LVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 236 ~~~~~~~~~dl~~~~~~~~fDlIvs~~------v~~hl~~~--------------~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) +.+..++..++..+ ..+.||.|++.. ++..-++- ....+|..+.+.||| ||.++.+.- T Consensus 290 v~~~~~Da~~l~~~-~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp-GG~LvYsTC 367 (431) T PRK14903 290 IEIKIADAERLTEY-VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK-GGILLYSTC 367 (431) T ss_pred EEEEECchhhhhhh-hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEEC Confidence 55555544444322 246899999732 22221211 124579999999999 999987641 Q ss_pred cccccCCCHHHHHHHHHhc-CCcEEE Q 019282 296 IKFCSRLGGEECTKRLTSL-GLEYIG 320 (343) Q Consensus 296 ~~~~~~~~~~~l~~~L~~a-Gf~~v~ 320 (343) . ....-..+.+...|++. +|+.+. T Consensus 368 s-~~~eEne~vv~~fl~~~~~~~~~~ 392 (431) T PRK14903 368 T-VTKEENTEVVKRFVYEQKDAEVID 392 (431) T ss_pred C-CChhhCHHHHHHHHHhCCCcEEec Confidence 1 11111256666666654 576544 No 139 >PRK14904 16S rRNA methyltransferase B; Provisional Probab=98.67 E-value=2.1e-07 Score=93.42 Aligned_cols=141 Identities=14% Similarity=0.060 Sum_probs=84.7 Q ss_pred HHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCC Q 019282 172 FLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFG 250 (343) Q Consensus 172 ~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~ 250 (343) .....+...++.+|||+|||+|..+.++++..... ..++++|.+..+.+.++++.. .|. . ++.++.++..++ . T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~-~~V~avD~s~~~l~~~~~~~~~~g~-~-~v~~~~~Da~~~---~ 314 (445) T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNR-GQITAVDRYPQKLEKIRSHASALGI-T-IIETIEGDARSF---S 314 (445) T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhCC-C-eEEEEeCccccc---c Confidence 34344677788999999999999999998866432 245555555555555554433 333 2 455565543333 2 Q ss_pred CCCceeEEEEc------cccc-------cCCch-------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHH Q 019282 251 SGVVYDLIYAS------AVFL-------HMPDK-------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKR 310 (343) Q Consensus 251 ~~~~fDlIvs~------~v~~-------hl~~~-------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~ 310 (343) .+++||+|++. .++. +.... ....+|..+.+.||| ||+++++.-.-. ..-..+.+... T Consensus 315 ~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp-gG~lvystcs~~-~~Ene~~v~~~ 392 (445) T PRK14904 315 PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP-GGVLVYATCSIE-PEENELQIEAF 392 (445) T ss_pred cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeCCCC-hhhHHHHHHHH Confidence 35689999962 1221 11111 123589999999999 999988641000 01114556677 Q ss_pred HHhc-CCcEEE Q 019282 311 LTSL-GLEYIG 320 (343) Q Consensus 311 L~~a-Gf~~v~ 320 (343) |+++ +|+.+. T Consensus 393 l~~~~~~~~~~ 403 (445) T PRK14904 393 LQRHPEFSAEP 403 (445) T ss_pred HHhCCCCEEec Confidence 7766 576543 No 140 >smart00650 rADc Ribosomal RNA adenine dimethylases. Probab=98.66 E-value=1.6e-07 Score=81.79 Aligned_cols=109 Identities=16% Similarity=0.219 Sum_probs=67.7 Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG 250 (343) Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~ 250 (343) +.+.+.+.+.++.+|||||||+|.++..+++. ...++++|++.... ..++++... ..++.++.++..++. + T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~--~~~~~~~~~---~~~v~ii~~D~~~~~-~- 73 (169) T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLA--PRLREKFAA---ADNLTVIHGDALKFD-L- 73 (169) T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHH--HHHHHHhcc---CCCEEEEECchhcCC-c- Confidence 44555667888889999999999999999985 24566666665444 433433221 225566666444433 2 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhc--cCCCCcEEEEEe Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASK--LRPYDGRIFVSH 294 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~--LkP~GG~lvi~~ 294 (343) .+..||.|+++..+ |+..+ .+.++.+. +.+ +|.+++.. T Consensus 74 ~~~~~d~vi~n~Py-~~~~~----~i~~~l~~~~~~~-~~~l~~q~ 113 (169) T smart00650 74 PKLQPYKVVGNLPY-NISTP----ILFKLLEEPPAFR-DAVLMVQK 113 (169) T ss_pred cccCCCEEEECCCc-ccHHH----HHHHHHhcCCCcc-eEEEEEEH Confidence 23469999998666 44443 33333332 447 78887763 No 141 >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. Probab=98.65 E-value=1.4e-07 Score=82.68 Aligned_cols=130 Identities=19% Similarity=0.250 Sum_probs=72.0 Q ss_pred CCCccchHHHHHHHHHh------cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCC-- Q 019282 160 GEPWAGGRDVFEFLAEA------SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGL-- 231 (343) Q Consensus 160 ~~~~~~~~~~~~~l~~~------~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~-- 231 (343) ...|+.+..+.+++... ....++.+|||+|||+|..++.++...+...++.+|.+. .+... +.+.+.+. T Consensus 18 ~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l--~~Ni~~N~~~ 94 (173) T PF10294_consen 18 GKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELL--RRNIELNGSL 94 (173) T ss_dssp -----HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHH--HHHHHTT--- T ss_pred EEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHH--HHHHHhcccc Confidence 34577677777777763 345678899999999999999998865667888999887 32222 22222211 Q ss_pred CCCCcEEEecccCC-c-CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec Q 019282 232 LHKRPIIVRGEDMD-F-TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 232 ~~~~~~~~~~~~~d-l-~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) ....+....-+..+ . .+......||+|++..++..- .....+++.+.++|+| +|.+++++. T Consensus 95 ~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~--~~~~~L~~tl~~ll~~-~~~vl~~~~ 157 (173) T PF10294_consen 95 LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE--ELFEPLVRTLKRLLKP-NGKVLLAYK 157 (173) T ss_dssp -----EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G--GGHHHHHHHHHHHBTT--TTEEEEEE T ss_pred ccccccCcEEEecCcccccccccccCCEEEEecccchH--HHHHHHHHHHHHHhCC-CCEEEEEeC Confidence 22233333221111 1 001124589999999999653 3445599999999999 998888753 No 142 >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase. Probab=98.64 E-value=2.6e-07 Score=86.40 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=79.4 Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCc Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVV 254 (343) Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~ 254 (343) .+.+.++.+|||+|||+|..+..+++...+.+ .++++|.+..+.+..+++.+ .+. . ++.++..+..++.. ..+. T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g-~v~a~D~~~~~l~~~~~n~~~~g~-~-~v~~~~~D~~~~~~--~~~~ 140 (264) T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEG-AIVANEFSKSRTKVLIANINRCGV-L-NVAVTNFDGRVFGA--AVPK 140 (264) T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCC-EEEEEcCCHHHHHHHHHHHHHcCC-C-cEEEecCCHHHhhh--hccC Confidence 46778899999999999999999998765432 35555555555554444433 333 2 34555543333321 2346 Q ss_pred eeEEEEcc------ccccCCch--------------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhc Q 019282 255 YDLIYASA------VFLHMPDK--------------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSL 314 (343) Q Consensus 255 fDlIvs~~------v~~hl~~~--------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~a 314 (343) ||.|++.. ++.+-++. ....+|+.+.+.||| ||+++.+.-. ....-.++.+...|++. T Consensus 141 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp-gG~lvYstcs-~~~~Ene~vv~~~l~~~ 218 (264) T TIGR00446 141 FDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP-GGVLVYSTCS-LEPEENEAVVDYLLEKR 218 (264) T ss_pred CCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCC-CChHHHHHHHHHHHHhC Confidence 99999632 22221111 123589999999999 9999876310 00001144455556554 Q ss_pred -CCc Q 019282 315 -GLE 317 (343) Q Consensus 315 -Gf~ 317 (343) +|. T Consensus 219 ~~~~ 222 (264) T TIGR00446 219 PDVV 222 (264) T ss_pred CCcE Confidence 454 No 143 >PLN02672 methionine S-methyltransferase Probab=98.64 E-value=7e-07 Score=97.05 Aligned_cols=131 Identities=15% Similarity=0.200 Sum_probs=84.7 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCC-C--------------CCCCcEEEecccCCc Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQG-L--------------LHKRPIIVRGEDMDF 246 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~-~--------------~~~~~~~~~~~~~dl 246 (343) +.+|||+|||+|.+++.++...+...++++|+++.....+..+ ...+ + ...++.++.++..+. T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~N--a~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082) T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWIN--LYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY 196 (1082) T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH--HHHcCcccccccccccccccccccEEEEECchhhh Confidence 4689999999999999999987766677777777666555443 2211 1 112566676633222 Q ss_pred CCCCC-CCceeEEEEccccc--------------cCC-------------------ch---HHHHHHHHHHhccCCCCcE Q 019282 247 TKFGS-GVVYDLIYASAVFL--------------HMP-------------------DK---LVWVGLERLASKLRPYDGR 289 (343) Q Consensus 247 ~~~~~-~~~fDlIvs~~v~~--------------hl~-------------------~~---~~~~~L~~l~r~LkP~GG~ 289 (343) ... ..+||+|+++--.- |-| ++ -...++.+..++|+| ||. T Consensus 197 --~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~p-gG~ 273 (1082) T PLN02672 197 --CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKP-MGI 273 (1082) T ss_pred --ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccC-CCE Confidence 111 23699999973211 100 00 113467788889999 999 Q ss_pred EEEEeccccccCCCHHHHH-HHHHhcCCcEEEee Q 019282 290 IFVSHNIKFCSRLGGEECT-KRLTSLGLEYIGKK 322 (343) Q Consensus 290 lvi~~~~~~~~~~~~~~l~-~~L~~aGf~~v~~~ 322 (343) +++..+... .+.+. +++++.||+.+... T Consensus 274 l~lEiG~~q-----~~~v~~~l~~~~gf~~~~~~ 302 (1082) T PLN02672 274 MIFNMGGRP-----GQAVCERLFERRGFRITKLW 302 (1082) T ss_pred EEEEECccH-----HHHHHHHHHHHCCCCeeEEe Confidence 999875221 45677 68999999887644 No 144 >COG4122 Predicted O-methyltransferase [General function prediction only] Probab=98.64 E-value=1.4e-07 Score=85.30 Aligned_cols=112 Identities=24% Similarity=0.234 Sum_probs=75.3 Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEe-cccCCcCCC Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVR-GEDMDFTKF 249 (343) Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~-~~~~dl~~~ 249 (343) |.......+.++|||||++.|.-+++++..++ +..++.+++++.. ...++++.+ .+..+ ++.++. ++..+...- T Consensus 51 L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~--~~~A~~n~~~ag~~~-~i~~~~~gdal~~l~~ 127 (219) T COG4122 51 LRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEER--AEIARENLAEAGVDD-RIELLLGGDALDVLSR 127 (219) T ss_pred HHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHH--HHHHHHHHHHcCCcc-eEEEEecCcHHHHHHh Confidence 33334556778999999999999999999998 4445556555544 444455433 55544 455555 344443321 Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ...++||+|+.-.-- ...+.+|+.+.++|+| ||.+++- T Consensus 128 ~~~~~fDliFIDadK-----~~yp~~le~~~~lLr~-GGliv~D 165 (219) T COG4122 128 LLDGSFDLVFIDADK-----ADYPEYLERALPLLRP-GGLIVAD 165 (219) T ss_pred ccCCCccEEEEeCCh-----hhCHHHHHHHHHHhCC-CcEEEEe Confidence 236899999885322 3344589999999999 9988764 No 145 >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... Probab=98.63 E-value=2.7e-07 Score=82.49 Aligned_cols=129 Identities=23% Similarity=0.297 Sum_probs=83.1 Q ss_pred eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc-CCCCCCCceeEEEEcc Q 019282 184 HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF-TKFGSGVVYDLIYASA 262 (343) Q Consensus 184 rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl-~~~~~~~~fDlIvs~~ 262 (343) .+||||||.|.+...+|...|...+.++++.......+..+. ...++ .++.++.+++..+ ..+..+++.|.|+..+ T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~-~~~~l--~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195) T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKA-EKRGL--KNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195) T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHH-HHHTT--SSEEEEES-CTTHHHHHSTTTSEEEEEEES T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHH-Hhhcc--cceEEEEccHHHHHhhcccCCchheEEEeC Confidence 899999999999999999998888777777776655554332 22333 3677777766663 3333468999998854 Q ss_pred ccccCCch------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHh--cCCcEEE Q 019282 263 VFLHMPDK------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTS--LGLEYIG 320 (343) Q Consensus 263 v~~hl~~~------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~--aGf~~v~ 320 (343) -=-|.... -...+++.+.++|+| ||.+.+......+ .+.+.+.++. .+|+.+. T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~-gG~l~~~TD~~~y----~~~~~~~~~~~~~~f~~~~ 157 (195) T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKP-GGELYFATDVEEY----AEWMLEQFEESHPGFENIE 157 (195) T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEE-EEEEEEEES-HHH----HHHHHHHHHHHSTTEEEE- T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCC-CCEEEEEeCCHHH----HHHHHHHHHhcCcCeEEcc Confidence 33222211 123689999999999 9999887532222 3456666766 3888774 No 146 >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. Probab=98.63 E-value=2.4e-07 Score=92.54 Aligned_cols=149 Identities=12% Similarity=0.067 Sum_probs=92.0 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343) .+.+++.+.+.+.+.++.+|||+|||+|.++..+++.. .. ++++|.+..+.+.++++...+.. .++.++.++..+ T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~--~~--V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~ 351 (431) T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA--KS--VVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLET 351 (431) T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC--CE--EEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHH Confidence 44566666666677778899999999999999998753 23 45555555555555544332222 256677765433 Q ss_pred c-CCCC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee Q 019282 246 F-TKFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 246 l-~~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343) + ..+. .++.||+|++.-.-. +- ...+++.+.+ ++| ++.++++.+.. +...-.+.|.+.||+...... T Consensus 352 ~l~~~~~~~~~~D~vi~dPPr~--G~--~~~~l~~l~~-l~~-~~ivyvsc~p~-----tlard~~~l~~~gy~~~~~~~ 420 (431) T TIGR00479 352 VLPKQPWAGQIPDVLLLDPPRK--GC--AAEVLRTIIE-LKP-ERIVYVSCNPA-----TLARDLEFLCKEGYGITWVQP 420 (431) T ss_pred HHHHHHhcCCCCCEEEECcCCC--CC--CHHHHHHHHh-cCC-CEEEEEcCCHH-----HHHHHHHHHHHCCeeEEEEEE Confidence 2 1111 235799998743211 10 1235666554 889 88888874311 111123457788999999999 Q ss_pred ccccccc Q 019282 324 HDSLLFN 330 (343) Q Consensus 324 ~~~l~~~ 330 (343) .|++|.. T Consensus 421 ~DmFP~T 427 (431) T TIGR00479 421 VDMFPHT 427 (431) T ss_pred eccCCCC Confidence 9998863 No 147 >PLN02476 O-methyltransferase Probab=98.61 E-value=2.1e-07 Score=87.35 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=73.6 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCc-eEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC-CCC--- Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPEN-FHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT-KFG--- 250 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~-~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~-~~~--- 250 (343) ....+..+|||||||+|..++.++...+..+ ++.++.++ .....+++..+ .|.. .++.++.+++.+.. .+. T Consensus 114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~--e~~~~Ar~n~~~aGl~-~~I~li~GdA~e~L~~l~~~~ 190 (278) T PLN02476 114 VQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDS--NSLEVAKRYYELAGVS-HKVNVKHGLAAESLKSMIQNG 190 (278) T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHHHHHhcc Confidence 3455677999999999999999998776433 44445554 54555555443 5554 47777777555432 111 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ..++||+|+.-.- ......+++.+.++|+| ||.+++- T Consensus 191 ~~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~-GGvIV~D 227 (278) T PLN02476 191 EGSSYDFAFVDAD-----KRMYQDYFELLLQLVRV-GGVIVMD 227 (278) T ss_pred cCCCCCEEEECCC-----HHHHHHHHHHHHHhcCC-CcEEEEe Confidence 1368999988542 34455699999999999 9998775 No 148 >KOG2899 consensus Predicted methyltransferase [General function prediction only] Probab=98.61 E-value=4e-07 Score=82.51 Aligned_cols=139 Identities=19% Similarity=0.265 Sum_probs=87.6 Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC-----C-CC------------------- Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ-----G-LL------------------- 232 (343) Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~-----~-~~------------------- 232 (343) ....+..+|||||..|.++..+++.+.+..+.++|||+.....|.. ..+. . .. T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark--~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288) T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARK--EIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288) T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHH--hccccccccccccCCCcccccccccccccccc Confidence 3445678999999999999999999988888888888877666633 2110 0 00 Q ss_pred ---------CCCcEEEec----ccCCcCCCCCCCceeEEEEccccc--cC--CchHHHHHHHHHHhccCCCCcEEEEEec Q 019282 233 ---------HKRPIIVRG----EDMDFTKFGSGVVYDLIYASAVFL--HM--PDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 233 ---------~~~~~~~~~----~~~dl~~~~~~~~fDlIvs~~v~~--hl--~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) ..++.+... ...|+.+. ....||+|.|-.+-- |+ +|+....+|.++.++|.| ||+|++.-. T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p-gGiLvvEPQ 210 (288) T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP-GGILVVEPQ 210 (288) T ss_pred ccccccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc-CcEEEEcCC Confidence 001111110 01122212 346799999854332 33 667788899999999999 999999720 Q ss_pred ------------ccccc-----CCCHHHHHHHHHhc--CCcEEE Q 019282 296 ------------IKFCS-----RLGGEECTKRLTSL--GLEYIG 320 (343) Q Consensus 296 ------------~~~~~-----~~~~~~l~~~L~~a--Gf~~v~ 320 (343) ..... .+.++....++.+. ||+.+. T Consensus 211 pWksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288) T KOG2899|consen 211 PWKSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288) T ss_pred chHHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeec Confidence 01111 12277777777665 666543 No 149 >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. Probab=98.59 E-value=4.9e-07 Score=88.75 Aligned_cols=148 Identities=14% Similarity=0.186 Sum_probs=89.4 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343) .+.+++.+.+.+...++.+|||+|||+|.+++.++.. ...++++|+++.....+ +++.+ .+. . ++.++.++.. T Consensus 218 ~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a--~~N~~~~~~-~-~~~~~~~d~~ 291 (374) T TIGR02085 218 AAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACA--QQSAQMLGL-D-NLSFAALDSA 291 (374) T ss_pred HHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHH--HHHHHHcCC-C-cEEEEECCHH Confidence 3444555544444345679999999999999999863 23455555555554444 44333 233 2 5666666443 Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeec Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTH 324 (343) Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343) ++... ..+.||+|++.---..+. ..+++.+. .++| ++.++++.+..-. ..++.. | .||+....+.+ T Consensus 292 ~~~~~-~~~~~D~vi~DPPr~G~~----~~~l~~l~-~~~p-~~ivyvsc~p~Tl----aRDl~~-L--~gy~l~~~~~~ 357 (374) T TIGR02085 292 KFATA-QMSAPELVLVNPPRRGIG----KELCDYLS-QMAP-KFILYSSCNAQTM----AKDIAE-L--SGYQIERVQLF 357 (374) T ss_pred HHHHh-cCCCCCEEEECCCCCCCc----HHHHHHHH-hcCC-CeEEEEEeCHHHH----HHHHHH-h--cCceEEEEEEe Confidence 33211 124699999875432222 12555564 4799 9999998642211 233443 3 79999999999 Q ss_pred ccccc-chhH Q 019282 325 DSLLF-NHYE 333 (343) Q Consensus 325 ~~l~~-~~~e 333 (343) |++|. .|.| T Consensus 358 DmFPqT~HvE 367 (374) T TIGR02085 358 DMFPHTSHYE 367 (374) T ss_pred ccCCCCCcEE Confidence 99997 4455 No 150 >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] Probab=98.59 E-value=4.7e-07 Score=85.43 Aligned_cols=128 Identities=15% Similarity=0.206 Sum_probs=87.1 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343) -.+..|||+|||+|.++...+.+ +..+++.++- ..|..+++++.+.+....++..+.|..++.+ ..++.|+|+ T Consensus 176 F~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEA---S~MAqyA~~Lv~~N~~~~rItVI~GKiEdie---LPEk~DviI 248 (517) T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEA---SEMAQYARKLVASNNLADRITVIPGKIEDIE---LPEKVDVII 248 (517) T ss_pred cCCcEEEEecCCccHHHHHHHHh-CcceEEEEeh---hHHHHHHHHHHhcCCccceEEEccCcccccc---CchhccEEE Confidence 35778999999999998877764 3345555543 3477777777666666678888988666655 457899999 Q ss_pred EccccccC-CchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHHHHHhcCC Q 019282 260 ASAVFLHM-PDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTKRLTSLGL 316 (343) Q Consensus 260 s~~v~~hl-~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~~L~~aGf 316 (343) +--+=..+ .+..+.++ -..++.||| .|..+-+++.-+...+. +.-+.+.+.++.| T Consensus 249 SEPMG~mL~NERMLEsY-l~Ark~l~P-~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnF 305 (517) T KOG1500|consen 249 SEPMGYMLVNERMLESY-LHARKWLKP-NGKMFPTVGDIHLAPFSDEQLYVEQFNKANF 305 (517) T ss_pred eccchhhhhhHHHHHHH-HHHHhhcCC-CCcccCcccceeecccchHHHHHHHHhhhhh Confidence 86444333 34444333 345699999 99999886655555555 4445566666666 No 151 >COG2521 Predicted archaeal methyltransferase [General function prediction only] Probab=98.57 E-value=2.4e-07 Score=83.58 Aligned_cols=143 Identities=17% Similarity=0.122 Sum_probs=90.9 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCce Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343) ...+.+.+|||...|-|.+++..++.- ...+.-+..|+.-+.. +.-+.. .++....+.++.+++.++-.-..+.+| T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeL--a~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287) T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLEL--AKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287) T ss_pred eccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEe--eccCCCCccccccccEEecccHHHHHhcCCcccc Confidence 345679999999999999999887731 1233444445544443 343333 334343556677765554322257889 Q ss_pred eEEEEcc-ccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc--ccCC-CHHHHHHHHHhcCCcEEEeee Q 019282 256 DLIYASA-VFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF--CSRL-GGEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 256 DlIvs~~-v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~--~~~~-~~~~l~~~L~~aGf~~v~~~~ 323 (343) |+|+-.- -|.+-+.-...++.++++|+||| ||+++=-.+.+- +... -+..+.++|+++||++++... T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkr-gGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~ 277 (287) T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKR-GGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVR 277 (287) T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCc-CCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeeh Confidence 9998631 22233344556689999999999 999964332221 2212 278888999999999887553 No 152 >PHA03412 putative methyltransferase; Provisional Probab=98.57 E-value=8.7e-07 Score=81.00 Aligned_cols=125 Identities=14% Similarity=0.245 Sum_probs=78.0 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcC---CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLN---PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~---~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343) .+.+|||+|||+|.++..+++... ...++++++|+.....+ +++. . ...+..+ |+.....+++||+ T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~A--r~n~----~--~~~~~~~---D~~~~~~~~~FDl 117 (241) T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLG--KRIV----P--EATWINA---DALTTEFDTLFDM 117 (241) T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHH--Hhhc----c--CCEEEEc---chhcccccCCccE Confidence 367999999999999999987642 34566777776555544 4321 1 2344544 4433334568999 Q ss_pred EEEccccccCC----------chHHHHHHHHHHhccCCCCcEEEEE-----eccccccCC------CHHHHHHHHHhcCC Q 019282 258 IYASAVFLHMP----------DKLVWVGLERLASKLRPYDGRIFVS-----HNIKFCSRL------GGEECTKRLTSLGL 316 (343) Q Consensus 258 Ivs~~v~~hl~----------~~~~~~~L~~l~r~LkP~GG~lvi~-----~~~~~~~~~------~~~~l~~~L~~aGf 316 (343) |+++--+.-.. ......++++..++++| |+ +++- +......+| +..++.++.++.|+ T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~-G~-~ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (241) T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQ-GT-FIIPQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGL 195 (241) T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCC-CE-EEeCcccccCcccCccceeeccCcccHHHHHHHHhcCe Confidence 99986665221 12233478888887776 55 5442 222223333 36778889999998 Q ss_pred cE Q 019282 317 EY 318 (343) Q Consensus 317 ~~ 318 (343) .. T Consensus 196 ~~ 197 (241) T PHA03412 196 EM 197 (241) T ss_pred ee Confidence 63 No 153 >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional Probab=98.55 E-value=3.5e-07 Score=96.69 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=83.3 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEE Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343) .++.+|||+|||+|.++..++.. +... ++.+|.+..+.+.++++.+ .+....++.++.++..++... ..++||+| T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~--V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~-~~~~fDlI 612 (702) T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKS--TTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE-AREQFDLI 612 (702) T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCE--EEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH-cCCCcCEE Confidence 35789999999999999999873 2233 4445555555555555444 333223567777755443211 14689999 Q ss_pred EEcccccc-------C--CchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee Q 019282 259 YASAVFLH-------M--PDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 259 vs~~v~~h-------l--~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343) ++.--..- . .......++..+.++|+| ||.++++..... +.. -.+.+.++|+++..... T Consensus 613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~-gG~l~~~~~~~~---~~~--~~~~~~~~g~~~~~i~~ 680 (702) T PRK11783 613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP-GGTLYFSNNKRG---FKM--DEEGLAKLGLKAEEITA 680 (702) T ss_pred EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC-CCEEEEEeCCcc---CCh--hHHHHHhCCCeEEEEec Confidence 99632210 0 011234578889999999 999988753221 112 26678889988766553 No 154 >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... Probab=98.53 E-value=1.4e-07 Score=84.95 Aligned_cols=107 Identities=22% Similarity=0.284 Sum_probs=71.8 Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCC-CC---C Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTK-FG---S 251 (343) Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~-~~---~ 251 (343) ...+..+||||||++|..+..+++.++. ..++.+++++ .....+++..+ .++ ..++.++.+++.+... +. . T Consensus 42 ~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~--~~~~~A~~~~~~ag~-~~~I~~~~gda~~~l~~l~~~~~ 118 (205) T PF01596_consen 42 RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDP--ERAEIARENFRKAGL-DDRIEVIEGDALEVLPELANDGE 118 (205) T ss_dssp HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSH--HHHHHHHHHHHHTTG-GGGEEEEES-HHHHHHHHHHTTT T ss_pred HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcH--HHHHHHHHHHHhcCC-CCcEEEEEeccHhhHHHHHhccC Confidence 3345669999999999999999998864 4455555555 45555555443 444 3477888776655321 11 1 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .++||+|+.-.. ......+++.+.++|+| ||.+++- T Consensus 119 ~~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~-ggvii~D 154 (205) T PF01596_consen 119 EGQFDFVFIDAD-----KRNYLEYFEKALPLLRP-GGVIIAD 154 (205) T ss_dssp TTSEEEEEEEST-----GGGHHHHHHHHHHHEEE-EEEEEEE T ss_pred CCceeEEEEccc-----ccchhhHHHHHhhhccC-CeEEEEc Confidence 358999998643 23344589999999999 8888775 No 155 >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. Probab=98.49 E-value=5.1e-07 Score=80.74 Aligned_cols=112 Identities=21% Similarity=0.214 Sum_probs=64.4 Q ss_pred CCCCeEEEEcCCcCHHHHHHH----HHc---CC--CceEEEEcChhHHHHHHHHhccc---CCCCC-------------- Q 019282 180 TPNSHVLEIGCGTLRVGVHFI----RYL---NP--ENFHCLERDELSLMAAFRYELPS---QGLLH-------------- 233 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la----~~~---~~--~~~~vvdid~s~~~~a~a~~~~~---~~~~~-------------- 233 (343) .+..+|+..||+||.-.-.++ +.. .. ..+.++|+|...+..|.+-.-.. .+++. T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196) T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196) T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc Confidence 356799999999997554443 311 11 24566777776665553211111 11100 Q ss_pred --------CCcEEEecccCCcCC-CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec Q 019282 234 --------KRPIIVRGEDMDFTK-FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 234 --------~~~~~~~~~~~dl~~-~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) ..+.+... ++.+ .+..+.||+|+|.+|+.++.++....+++.+++.|+| ||.|++.+. T Consensus 110 ~~v~~~lr~~V~F~~~---NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p-gG~L~lG~s 176 (196) T PF01739_consen 110 YRVKPELRKMVRFRRH---NLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP-GGYLFLGHS 176 (196) T ss_dssp TTE-HHHHTTEEEEE-----TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE-EEEEEE-TT T ss_pred eeEChHHcCceEEEec---ccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC-CCEEEEecC Confidence 23344433 3333 3356799999999999999999889999999999999 999999854 No 156 >PRK10611 chemotaxis methyltransferase CheR; Provisional Probab=98.49 E-value=1.6e-06 Score=81.92 Aligned_cols=110 Identities=16% Similarity=0.124 Sum_probs=70.5 Q ss_pred CCeEEEEcCCcCHHHHHHH----HHcCC----CceEEEEcChhHHHHHHHHhccc---CCCC------------------ Q 019282 182 NSHVLEIGCGTLRVGVHFI----RYLNP----ENFHCLERDELSLMAAFRYELPS---QGLL------------------ 232 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la----~~~~~----~~~~vvdid~s~~~~a~a~~~~~---~~~~------------------ 232 (343) ..||+..||+||--.-.+| +..+. ..+.++|||...+..+.+-.... .+++ T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287) T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287) T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce Confidence 4799999999997554443 32221 23556666665555443211000 0000 Q ss_pred -------CCCcEEEecccCCcCC--CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec Q 019282 233 -------HKRPIIVRGEDMDFTK--FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 233 -------~~~~~~~~~~~~dl~~--~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) -..+.+... ++.+ ++..+.||+|+|.+++.|+.++....+++++++.|+| ||+|++.+. T Consensus 196 ~~v~~~lr~~V~F~~~---NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p-gG~L~lG~s 263 (287) T PRK10611 196 VRVRQELANYVDFQQL---NLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP-DGLLFAGHS 263 (287) T ss_pred EEEChHHHccCEEEcc---cCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC-CcEEEEeCc Confidence 012333332 4433 2235789999999999999888888899999999999 999998864 No 157 >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] Probab=98.46 E-value=5.2e-07 Score=85.94 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=78.5 Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCC Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSG 252 (343) Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~ 252 (343) +....++-+++.|||||||||.++...+++. ... +.+++.+... ..+.+....+...+.+.++++..+++. ++ . T Consensus 52 i~~n~~lf~dK~VlDVGcGtGILS~F~akAG-A~~--V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~-LP-~ 125 (346) T KOG1499|consen 52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKAG-ARK--VYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE-LP-V 125 (346) T ss_pred HhcchhhcCCCEEEEcCCCccHHHHHHHHhC-cce--EEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe-cC-c Confidence 4444556788999999999999999888864 334 5555554443 555555554455557788888777773 53 5 Q ss_pred CceeEEEEccccccCC-chHHHHHHHHHHhccCCCCcEEEEE Q 019282 253 VVYDLIYASAVFLHMP-DKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~-~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ++.|+|++-++=..+- +....++|-.=-+.|+| ||.++-. T Consensus 126 eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~-~G~i~P~ 166 (346) T KOG1499|consen 126 EKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKE-GGLIYPD 166 (346) T ss_pred cceeEEeehhhhHHHHHhhhhhhhhhhhhhccCC-CceEccc Confidence 7999999966554442 33445567777789999 9998643 No 158 >KOG2904 consensus Predicted methyltransferase [General function prediction only] Probab=98.43 E-value=2.1e-06 Score=79.24 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=72.6 Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC-- Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD-- 245 (343) Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d-- 245 (343) .+++.+....+.+ +..|||+|||+|..++.++..+++..++++|++ ......+.++.......+++..+.. .+. T Consensus 136 ~Vid~~~~~~~~~-~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S--~~Ai~La~eN~qr~~l~g~i~v~~~-~me~d 211 (328) T KOG2904|consen 136 AVIDALNNSEHSK-HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVS--KAAIKLAKENAQRLKLSGRIEVIHN-IMESD 211 (328) T ss_pred HHHHHHhhhhhcc-cceEEEecCCccHHHHHHHhcCCCceEEEEecc--HHHHHHHHHHHHHHhhcCceEEEec-ccccc Confidence 3455555444444 448999999999999999998885555555554 4555555544332222224433321 111 Q ss_pred -cCCC-CCCCceeEEEEccccccCCc------------------------hHHHHHHHHHHhccCCCCcEEEEEec Q 019282 246 -FTKF-GSGVVYDLIYASAVFLHMPD------------------------KLVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 246 -l~~~-~~~~~fDlIvs~~v~~hl~~------------------------~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) +... ...+++|+++++--+-.-.+ +....++.-..|.|+| ||.+++... T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~-gg~~~le~~ 286 (328) T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQP-GGFEQLELV 286 (328) T ss_pred cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhccc-CCeEEEEec Confidence 1111 24589999999843311110 1123567778899999 999988753 No 159 >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. Probab=98.42 E-value=2.3e-06 Score=76.41 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=71.2 Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343) Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343) ..++++|. ..+++..|-|+|||.+.++..+. .+++|...|... .++.+ +.++.... T Consensus 61 d~iI~~l~---~~~~~~viaD~GCGdA~la~~~~-----~~~~V~SfDLva--------------~n~~V--tacdia~v 116 (219) T PF05148_consen 61 DVIIEWLK---KRPKSLVIADFGCGDAKLAKAVP-----NKHKVHSFDLVA--------------PNPRV--TACDIANV 116 (219) T ss_dssp HHHHHHHC---TS-TTS-EEEES-TT-HHHHH-------S---EEEEESS---------------SSTTE--EES-TTS- T ss_pred HHHHHHHH---hcCCCEEEEECCCchHHHHHhcc-----cCceEEEeeccC--------------CCCCE--EEecCccC Confidence 44566663 45566799999999999875442 234455555411 11132 22222233 Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCC-CHHHHHHHHHhcCCcEEEeeec Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRL-GGEECTKRLTSLGLEYIGKKTH 324 (343) Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~-~~~~l~~~L~~aGf~~v~~~~~ 324 (343) + + .+++.|++++...+. + ..+..++.+..|+||| ||.|.|..- ..++ ..+.+.+.+++.||+....... T Consensus 117 P-L-~~~svDv~VfcLSLM--G-Tn~~~fi~EA~RvLK~-~G~L~IAEV---~SRf~~~~~F~~~~~~~GF~~~~~d~~ 186 (219) T PF05148_consen 117 P-L-EDESVDVAVFCLSLM--G-TNWPDFIREANRVLKP-GGILKIAEV---KSRFENVKQFIKALKKLGFKLKSKDES 186 (219) T ss_dssp S----TT-EEEEEEES-----S-S-HHHHHHHHHHHEEE-EEEEEEEEE---GGG-S-HHHHHHHHHCTTEEEEEEE-- T ss_pred c-C-CCCceeEEEEEhhhh--C-CCcHHHHHHHHheecc-CcEEEEEEe---cccCcCHHHHHHHHHHCCCeEEecccC Confidence 3 2 478999999987763 2 2345599999999999 999999842 2222 3788889999999999886643 No 160 >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional Probab=98.35 E-value=3.7e-06 Score=83.09 Aligned_cols=126 Identities=12% Similarity=0.020 Sum_probs=73.4 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC-CCC-CCCcee Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT-KFG-SGVVYD 256 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~-~~~-~~~~fD 256 (343) .++.+|||+|||+|.++..++. .+...++.+|+++ .+.+.++++.+ .++...++.++.++..++. .+. ..++|| T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~--~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396) T PRK15128 219 VENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQ--EALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396) T ss_pred cCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCH--HHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCC Confidence 4578999999999999887654 2233455555555 44444455444 3332235667766554432 111 245899 Q ss_pred EEEEccccccCCc-------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHH Q 019282 257 LIYASAVFLHMPD-------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLT 312 (343) Q Consensus 257 lIvs~~v~~hl~~-------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~ 312 (343) +|++.--...-.. .....++....++|+| ||.++.+.... +.+.+++.+.+. T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~-gG~lv~~scs~---~~~~~~f~~~v~ 354 (396) T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP-GGILLTFSCSG---LMTSDLFQKIIA 354 (396) T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC-CeEEEEEeCCC---cCCHHHHHHHHH Confidence 9998754421111 1123456678899999 99998753211 223455555543 No 161 >PRK11727 23S rRNA mA1618 methyltransferase; Provisional Probab=98.35 E-value=2e-05 Score=75.63 Aligned_cols=137 Identities=15% Similarity=0.057 Sum_probs=78.5 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCC-CCCCCcEEEe-cccCCcC-CC-CCCCcee Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQG-LLHKRPIIVR-GEDMDFT-KF-GSGVVYD 256 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~-~~~~~~~~~~-~~~~dl~-~~-~~~~~fD 256 (343) ++.+|||||||+|.+...++...+...++++|+|+.....+ +++.+.+ ....++.+.. .+..++. .. ...+.|| T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A--~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321) T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASA--QAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321) T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHH--HHHHHhccCCcCcEEEEEccchhhhhhcccccCCceE Confidence 46799999999999888887766656677777777666555 4444433 1233444432 1111221 11 1356899 Q ss_pred EEEEccccccCCchHH---HHHHHH----------------HHhccCCCCcEEEEEe-----ccccc-----------cC Q 019282 257 LIYASAVFLHMPDKLV---WVGLER----------------LASKLRPYDGRIFVSH-----NIKFC-----------SR 301 (343) Q Consensus 257 lIvs~~v~~hl~~~~~---~~~L~~----------------l~r~LkP~GG~lvi~~-----~~~~~-----------~~ 301 (343) +|+|+--|+.-..... ..-.+. ..+++.+ ||.+-+.. ...+. .. T Consensus 192 livcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~-GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk 270 (321) T PRK11727 192 ATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE-GGEVAFIKRMIEESKAFAKQVLWFTSLVSKK 270 (321) T ss_pred EEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC-CcEeeeehHhhHHHHHHHhhCcEEEEEeecc Confidence 9999988854433311 111222 2344557 78764431 11111 11 Q ss_pred CCHHHHHHHHHhcCCcEEE Q 019282 302 LGGEECTKRLTSLGLEYIG 320 (343) Q Consensus 302 ~~~~~l~~~L~~aGf~~v~ 320 (343) -....+.+.|++.|...+. T Consensus 271 ~~l~~l~~~L~~~~~~~~~ 289 (321) T PRK11727 271 ENLPPLYRALKKVGAVEVK 289 (321) T ss_pred CCHHHHHHHHHHcCCceEE Confidence 1288899999999995443 No 162 >KOG2940 consensus Predicted methyltransferase [General function prediction only] Probab=98.32 E-value=1.4e-06 Score=78.51 Aligned_cols=130 Identities=21% Similarity=0.201 Sum_probs=86.2 Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEcc Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASA 262 (343) Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~ 262 (343) ..++|||||-|.+..++...- -.+++.+ |.+.-|....+.....++ ......+ ++++.++ .++++|+|+++. T Consensus 74 p~a~diGcs~G~v~rhl~~e~-vekli~~--DtS~~M~~s~~~~qdp~i---~~~~~v~-DEE~Ldf-~ens~DLiisSl 145 (325) T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEG-VEKLIMM--DTSYDMIKSCRDAQDPSI---ETSYFVG-DEEFLDF-KENSVDLIISSL 145 (325) T ss_pred cceeecccchhhhhHHHHhcc-hhheeee--ecchHHHHHhhccCCCce---EEEEEec-chhcccc-cccchhhhhhhh Confidence 579999999999999987632 2234444 455555554432111111 2222333 3444445 478999999999 Q ss_pred ccccCCchHHHHHHHHHHhccCCCCcEEEEEe-----------------------ccccccCCC-HHHHHHHHHhcCCcE Q 019282 263 VFLHMPDKLVWVGLERLASKLRPYDGRIFVSH-----------------------NIKFCSRLG-GEECTKRLTSLGLEY 318 (343) Q Consensus 263 v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~-----------------------~~~~~~~~~-~~~l~~~L~~aGf~~ 318 (343) .+||+.+-.. .+.+|+..||| +|.++-+. -.+++..+. ..++-.+|.++||.. T Consensus 146 slHW~NdLPg--~m~~ck~~lKP-Dg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m 222 (325) T KOG2940|consen 146 SLHWTNDLPG--SMIQCKLALKP-DGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSM 222 (325) T ss_pred hhhhhccCch--HHHHHHHhcCC-CccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccc Confidence 9999887544 78999999999 99987541 012233333 678889999999997 Q ss_pred EEeee Q 019282 319 IGKKT 323 (343) Q Consensus 319 v~~~~ 323 (343) +...+ T Consensus 223 ~tvDt 227 (325) T KOG2940|consen 223 LTVDT 227 (325) T ss_pred ceecc Confidence 76654 No 163 >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] Probab=98.32 E-value=2.9e-06 Score=77.52 Aligned_cols=109 Identities=21% Similarity=0.214 Sum_probs=78.7 Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC-CCCceeEEEEc Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG-SGVVYDLIYAS 261 (343) Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~fDlIvs~ 261 (343) ..+||||||.|.+...+|+..|...+.++++-.+.+..+..+ ..+.++. ++.+++.++..+.++. ++++.|.|+.+ T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k-~~~~~l~--Nlri~~~DA~~~l~~~~~~~sl~~I~i~ 126 (227) T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKK-IKELGLK--NLRLLCGDAVEVLDYLIPDGSLDKIYIN 126 (227) T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHH-HHHcCCC--cEEEEcCCHHHHHHhcCCCCCeeEEEEE Confidence 589999999999999999999988888888887776666443 2333442 5666666666655443 45599999986 Q ss_pred cccccCCch------HHHHHHHHHHhccCCCCcEEEEEec Q 019282 262 AVFLHMPDK------LVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 262 ~v~~hl~~~------~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) +-=-|-... -...+++.+.++|+| ||.|.+... T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~-gG~l~~aTD 165 (227) T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKP-GGVLHFATD 165 (227) T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccC-CCEEEEEec Confidence 544332211 124689999999999 999988743 No 164 >PLN02589 caffeoyl-CoA O-methyltransferase Probab=98.32 E-value=2e-06 Score=79.57 Aligned_cols=107 Identities=13% Similarity=0.077 Sum_probs=71.7 Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC-CCC---- Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT-KFG---- 250 (343) Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~-~~~---- 250 (343) ...+..+|||||+++|.-++.++..++. ..++.++.++ ...+.+++..+ .|+. .++.++.+++.+.. .+. T Consensus 76 ~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~--~~~~~Ar~~~~~ag~~-~~I~~~~G~a~e~L~~l~~~~~ 152 (247) T PLN02589 76 KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINR--ENYELGLPVIQKAGVA-HKIDFREGPALPVLDQMIEDGK 152 (247) T ss_pred HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCH--HHHHHHHHHHHHCCCC-CceEEEeccHHHHHHHHHhccc Confidence 3444569999999999999999987754 3455555554 44555555443 5554 47788877555432 111 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ..++||+|+.-.- ......+++.+.++|+| ||.+++- T Consensus 153 ~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~-GGviv~D 189 (247) T PLN02589 153 YHGTFDFIFVDAD-----KDNYINYHKRLIDLVKV-GGVIGYD 189 (247) T ss_pred cCCcccEEEecCC-----HHHhHHHHHHHHHhcCC-CeEEEEc Confidence 1368999998643 23334589999999999 9997763 No 165 >TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). Probab=98.29 E-value=2.1e-05 Score=72.04 Aligned_cols=139 Identities=16% Similarity=0.108 Sum_probs=74.9 Q ss_pred hHHHHHHHHHhcCC-CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc Q 019282 166 GRDVFEFLAEASHI-TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343) Q Consensus 166 ~~~~~~~l~~~~~l-~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343) +-..++.+.+...+ .++.+|||+|||||.++..+++. +...++++|++..++....+ +... ......++... .. T Consensus 59 ~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~-~~~~v~~~~~~ni~~~--~~ 134 (228) T TIGR00478 59 GGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLR-QDERVKVLERTNIRYV--TP 134 (228) T ss_pred hHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHh-cCCCeeEeecCCcccC--CH Confidence 33444555555554 46779999999999999999985 33445555555544433222 1111 00000011100 11 Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccc------cCCC-----------HHH Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFC------SRLG-----------GEE 306 (343) Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~------~~~~-----------~~~ 306 (343) .++. . .-..||+++++... .+..+.+.|+| |.+++.....|. ..-+ .++ T Consensus 135 ~~~~-~-d~~~~DvsfiS~~~----------~l~~i~~~l~~--~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~ 200 (228) T TIGR00478 135 ADIF-P-DFATFDVSFISLIS----------ILPELDLLLNP--NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHK 200 (228) T ss_pred hHcC-C-CceeeeEEEeehHh----------HHHHHHHHhCc--CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHH Confidence 1111 0 11368877776544 57889999998 555544222221 1111 455 Q ss_pred HHHHHHhcCCcEEEee Q 019282 307 CTKRLTSLGLEYIGKK 322 (343) Q Consensus 307 l~~~L~~aGf~~v~~~ 322 (343) +...+.+.||+++... T Consensus 201 ~~~~~~~~~~~~~~~~ 216 (228) T TIGR00478 201 VIDKGESPDFQEKKII 216 (228) T ss_pred HHHHHHcCCCeEeeEE Confidence 6667778899877654 No 166 >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation Probab=98.28 E-value=5.8e-06 Score=77.79 Aligned_cols=155 Identities=17% Similarity=0.026 Sum_probs=94.2 Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343) ....++..+.....--...+|||+|||+|..+..+.+.++ .-..++.+|.+..+...++.+.................. T Consensus 17 ~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 95 (274) T PF09243_consen 17 AVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYR 95 (274) T ss_pred HHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhc Confidence 3445666666555444456999999999988777777666 344555666666777666655433221111100000001 Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeec Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTH 324 (343) Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343) +.. .-...|+|++.+++..+++.....+++.+.+.+.+ .|+|..+......-...+.++.|.+.|+.++.=-.| T Consensus 96 ~~~---~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~---~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~APCph 169 (274) T PF09243_consen 96 DFL---PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP---VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAPCPH 169 (274) T ss_pred ccc---cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC---cEEEEcCCChHHHHHHHHHHHHHhhCCCceECCCcc Confidence 111 12234999999999999987777788888887763 665553211111111667788888899998876666 Q ss_pred cc Q 019282 325 DS 326 (343) Q Consensus 325 ~~ 326 (343) +. T Consensus 170 ~~ 171 (274) T PF09243_consen 170 DG 171 (274) T ss_pred CC Confidence 43 No 167 >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] Probab=98.26 E-value=6e-06 Score=77.82 Aligned_cols=128 Identities=15% Similarity=0.230 Sum_probs=79.5 Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCC---CcEEEecccCC--cCC-CCC Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHK---RPIIVRGEDMD--FTK-FGS 251 (343) Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~---~~~~~~~~~~d--l~~-~~~ 251 (343) -.+++..+||+|||-|+-++..-++ .-..+.++||.......+..+-+.-.+...+ ...++.++... +.+ ++. T Consensus 114 y~~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389) T KOG1975|consen 114 YTKRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389) T ss_pred HhccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC Confidence 4567888999999999988776552 3345677777665555553322110111111 23555553221 111 112 Q ss_pred -CCceeEEEEccccccC--CchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhc Q 019282 252 -GVVYDLIYASAVFLHM--PDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSL 314 (343) Q Consensus 252 -~~~fDlIvs~~v~~hl--~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~a 314 (343) +.+||+|-|-+++|+. .....+..|.++.++|+| ||+++-+.+ ..+.+...|+.. T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp-GG~FIgTiP-------dsd~Ii~rlr~~ 250 (389) T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP-GGVFIGTIP-------DSDVIIKRLRAG 250 (389) T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC-CcEEEEecC-------cHHHHHHHHHhc Confidence 3339999999999865 445556689999999999 999988753 245666666655 No 168 >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional Probab=98.25 E-value=9.2e-06 Score=72.85 Aligned_cols=106 Identities=14% Similarity=0.170 Sum_probs=63.6 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEE Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343) .++.+|||+|||+|.+++.++... ...++.+++++..... ++++.+ .+. .++.++.++..++... ..++||+| T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~--a~~Nl~~~~~--~~v~~~~~D~~~~l~~-~~~~fDlV 125 (199) T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQ--LIKNLATLKA--GNARVVNTNALSFLAQ-PGTPHNVV 125 (199) T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHH--HHHHHHHhCC--CcEEEEEchHHHHHhh-cCCCceEE Confidence 457799999999999998654432 2455555555544443 343322 232 2455665543332211 23579999 Q ss_pred EEccccccCCchHHHHHHHHHHh--ccCCCCcEEEEEec Q 019282 259 YASAVFLHMPDKLVWVGLERLAS--KLRPYDGRIFVSHN 295 (343) Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r--~LkP~GG~lvi~~~ 295 (343) ++.--+.. + .....++.+.. +|+| +|.+++.+. T Consensus 126 ~~DPPy~~-g--~~~~~l~~l~~~~~l~~-~~iv~ve~~ 160 (199) T PRK10909 126 FVDPPFRK-G--LLEETINLLEDNGWLAD-EALIYVESE 160 (199) T ss_pred EECCCCCC-C--hHHHHHHHHHHCCCcCC-CcEEEEEec Confidence 99877532 2 12235565555 4899 999999875 No 169 >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity Probab=98.23 E-value=9.9e-07 Score=87.68 Aligned_cols=116 Identities=18% Similarity=0.308 Sum_probs=73.3 Q ss_pred chHHHHHHHHHhcCC--CCC--CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHH---HHHHHHhcccCCCCCCCcE Q 019282 165 GGRDVFEFLAEASHI--TPN--SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL---MAAFRYELPSQGLLHKRPI 237 (343) Q Consensus 165 ~~~~~~~~l~~~~~l--~~~--~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~---~~a~a~~~~~~~~~~~~~~ 237 (343) +...-++.|.+.+.+ ..+ ..+||||||+|.++.++++ .+++.+.+.+... +..++ .+.|++. .+. T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~----r~V~t~s~a~~d~~~~qvqfa---leRGvpa-~~~ 168 (506) T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLE----RNVTTMSFAPNDEHEAQVQFA---LERGVPA-MIG 168 (506) T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhh----CCceEEEcccccCCchhhhhh---hhcCcch-hhh Confidence 344555666665555 333 3589999999999999988 6666665544322 22222 2234432 111 Q ss_pred EEecccCCcCCCCCCCceeEEEEccccccC-CchHHHHHHHHHHhccCCCCcEEEEEec Q 019282 238 IVRGEDMDFTKFGSGVVYDLIYASAVFLHM-PDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 238 ~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl-~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) .+ ....++ | +++.||+|.|...+... +.... +|-++-|+|+| ||+++++.. T Consensus 169 ~~--~s~rLP-f-p~~~fDmvHcsrc~i~W~~~~g~--~l~evdRvLRp-GGyfv~S~p 220 (506) T PF03141_consen 169 VL--GSQRLP-F-PSNAFDMVHCSRCLIPWHPNDGF--LLFEVDRVLRP-GGYFVLSGP 220 (506) T ss_pred hh--cccccc-C-Cccchhhhhcccccccchhcccc--eeehhhhhhcc-CceEEecCC Confidence 11 112344 3 47899999998777544 33334 89999999999 999999854 No 170 >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional Probab=98.23 E-value=1.2e-05 Score=75.04 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=60.7 Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343) ..+.+.+.+.+..++.++.+|||||||+|.++..+++.. ..++++++|...... +++.... ..++.++.++.. T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~--l~~~~~~---~~~v~ii~~D~~ 85 (258) T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEF--LRDDEIA---AGNVEIIEGDAL 85 (258) T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHH--HHHHhcc---CCCEEEEEeccc Confidence 345677788888888889999999999999999999862 456666666654444 3432221 235666666443 Q ss_pred CcCCCCCCCceeEEEEccccc Q 019282 245 DFTKFGSGVVYDLIYASAVFL 265 (343) Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~ 265 (343) ++. . ..||.|+++..++ T Consensus 86 ~~~---~-~~~d~Vv~NlPy~ 102 (258) T PRK14896 86 KVD---L-PEFNKVVSNLPYQ 102 (258) T ss_pred cCC---c-hhceEEEEcCCcc Confidence 332 2 2589999987763 No 171 >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] Probab=98.23 E-value=5.6e-06 Score=73.68 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=77.6 Q ss_pred HHHHHHHhcC--CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCC---------CCCCCcE Q 019282 169 VFEFLAEASH--ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQG---------LLHKRPI 237 (343) Q Consensus 169 ~~~~l~~~~~--l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~---------~~~~~~~ 237 (343) +...+.+.+. +.||.+.||+|.|+|.++..++......+...+||+.-+....+.+++...- +....+. T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237) T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237) T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE Confidence 3444444444 8899999999999999999999877766655577777777666665543321 2223455 Q ss_pred EEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe Q 019282 238 IVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 238 ~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) ++.++..- .+....+||.|.+-.... ...+++.+.|+| ||++++-. T Consensus 148 ivvGDgr~--g~~e~a~YDaIhvGAaa~--------~~pq~l~dqL~~-gGrllip~ 193 (237) T KOG1661|consen 148 IVVGDGRK--GYAEQAPYDAIHVGAAAS--------ELPQELLDQLKP-GGRLLIPV 193 (237) T ss_pred EEeCCccc--cCCccCCcceEEEccCcc--------ccHHHHHHhhcc-CCeEEEee Confidence 66553221 123567999998874432 256778899999 99998864 No 172 >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed Probab=98.21 E-value=8.2e-06 Score=76.63 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=57.6 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343) ...+.+.+.+.+.+.++.+|||||||+|.++..+++..+ .++++|+|+. +.+.+++... ..++.++.++..+ T Consensus 27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~--~~~~~~~~~~----~~~v~~i~~D~~~ 98 (272) T PRK00274 27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRD--LAPILAETFA----EDNLTIIEGDALK 98 (272) T ss_pred CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHH--HHHHHHHhhc----cCceEEEEChhhc Confidence 445667777777888899999999999999999998642 5666666654 4444443221 1356667664443 Q ss_pred cCCCCCCCc-eeEEEEcccc Q 019282 246 FTKFGSGVV-YDLIYASAVF 264 (343) Q Consensus 246 l~~~~~~~~-fDlIvs~~v~ 264 (343) +. .+.. +|.|+++--+ T Consensus 99 ~~---~~~~~~~~vv~NlPY 115 (272) T PRK00274 99 VD---LSELQPLKVVANLPY 115 (272) T ss_pred CC---HHHcCcceEEEeCCc Confidence 32 2221 5888887554 No 173 >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] Probab=98.21 E-value=1.7e-05 Score=74.11 Aligned_cols=132 Identities=19% Similarity=0.209 Sum_probs=82.2 Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCH----HHHHHHHHcC-----CCceEEEEcChhHHHHHHHHhcc-c---CCC Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLR----VGVHFIRYLN-----PENFHCLERDELSLMAAFRYELP-S---QGL 231 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~----~a~~la~~~~-----~~~~~vvdid~s~~~~a~a~~~~-~---~~~ 231 (343) ..+.+...+.....- ...+|+-.||+||- ++..+.+.++ .-.+.++|||...+..|.+-.-. . .++ T Consensus 81 l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~ 159 (268) T COG1352 81 LRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGL 159 (268) T ss_pred HHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccC Confidence 344555545432222 46799999999996 4444555554 24567788888777666331111 0 111 Q ss_pred CCC--CcEEEe-----------------cccCCcCCCC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEE Q 019282 232 LHK--RPIIVR-----------------GEDMDFTKFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIF 291 (343) Q Consensus 232 ~~~--~~~~~~-----------------~~~~dl~~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lv 291 (343) +.. ...+.. ....++..-. ..+.||+|+|.+|+-++..+....++++++..|+| ||+|+ T Consensus 160 ~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~-gG~Lf 238 (268) T COG1352 160 PPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP-GGLLF 238 (268) T ss_pred CHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC-CCEEE Confidence 110 000111 0112333222 45679999999999999999888999999999999 99999 Q ss_pred EEecccc Q 019282 292 VSHNIKF 298 (343) Q Consensus 292 i~~~~~~ 298 (343) +-+.+.. T Consensus 239 lG~sE~~ 245 (268) T COG1352 239 LGHSETI 245 (268) T ss_pred EccCccc Confidence 9875443 No 174 >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed Probab=98.17 E-value=1.1e-05 Score=82.28 Aligned_cols=132 Identities=17% Similarity=0.091 Sum_probs=84.9 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343) .+..+||||||.|.++..+|...|...+.++++.......+..+. ...++. ++.++..+...+....+++++|.|+. T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~-~~~~l~--N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506) T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLA-GEQNIT--NFLLFPNNLDLILNDLPNNSLDGIYI 423 (506) T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHH-HHcCCC--eEEEEcCCHHHHHHhcCcccccEEEE Confidence 456899999999999999999999888888888876665554432 233442 34444443222333335678999988 Q ss_pred ccccccCCch------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC-CcEEE Q 019282 261 SAVFLHMPDK------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG-LEYIG 320 (343) Q Consensus 261 ~~v~~hl~~~------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG-f~~v~ 320 (343) ++-=.|-... -...+++.+.++||| ||.+.+......+ -+...+.+.+.+ |+.+. T Consensus 424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~-gG~i~~~TD~~~y----~~~~~~~~~~~~~f~~~~ 485 (506) T PRK01544 424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKD-NGNLVFASDIENY----FYEAIELIQQNGNFEIIN 485 (506) T ss_pred ECCCCCCCCCCccccccCHHHHHHHHHhcCC-CCEEEEEcCCHHH----HHHHHHHHHhCCCeEecc Confidence 6543332111 124689999999999 9999887432222 233455556655 87653 No 175 >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated Probab=98.12 E-value=2.5e-05 Score=76.35 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=87.9 Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343) ..+.+++.+.+.+... +.+|||++||+|.++..+++.. ..+++++++. .+.+.++++.. .+. . ++.++.++. T Consensus 191 ~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~--~ai~~a~~N~~~~~~-~-~v~~~~~d~ 263 (362) T PRK05031 191 VNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNF--RRVLATEISK--PSVAAAQYNIAANGI-D-NVQIIRMSA 263 (362) T ss_pred HHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhC--CEEEEEECCH--HHHHHHHHHHHHhCC-C-cEEEEECCH Confidence 3455666666554432 3579999999999999888854 3455555555 44444454433 233 2 566776655 Q ss_pred CCcCC-CCC-------------CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHH Q 019282 244 MDFTK-FGS-------------GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTK 309 (343) Q Consensus 244 ~dl~~-~~~-------------~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~ 309 (343) .++.. +.. ...||+|+..--- -+-. ..+++.+.+ | ++.+|++.+..-. ..++.. T Consensus 264 ~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~--~~~l~~l~~---~-~~ivyvSC~p~tl----arDl~~ 331 (362) T PRK05031 264 EEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLD--DETLKLVQA---Y-ERILYISCNPETL----CENLET 331 (362) T ss_pred HHHHHHHhhcccccccccccccCCCCCEEEECCCC--CCCc--HHHHHHHHc---c-CCEEEEEeCHHHH----HHHHHH Confidence 44311 100 1258999885432 1111 125555544 8 8999998642111 344443 Q ss_pred HHHhcCCcEEEeeecccccc-chhHH Q 019282 310 RLTSLGLEYIGKKTHDSLLF-NHYEI 334 (343) Q Consensus 310 ~L~~aGf~~v~~~~~~~l~~-~~~e~ 334 (343) |.+ ||++...+..|++|. .|.|. T Consensus 332 -L~~-gY~l~~v~~~DmFPqT~HvE~ 355 (362) T PRK05031 332 -LSQ-THKVERFALFDQFPYTHHMEC 355 (362) T ss_pred -HcC-CcEEEEEEEcccCCCCCcEEE Confidence 333 999999999999996 45553 No 176 >PTZ00338 dimethyladenosine transferase-like protein; Provisional Probab=98.12 E-value=1.8e-05 Score=75.21 Aligned_cols=96 Identities=19% Similarity=0.268 Sum_probs=63.0 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343) ...+.+.+.+...+.++.+|||||||+|.++..+++.. ..++++++|....... ++... .+. ..++.++.++.. T Consensus 21 d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l--~~~~~~~~~-~~~v~ii~~Dal 95 (294) T PTZ00338 21 NPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAEL--KKRFQNSPL-ASKLEVIEGDAL 95 (294) T ss_pred CHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHH--HHHHHhcCC-CCcEEEEECCHh Confidence 45677888888888899999999999999999998853 3466666666554443 43222 221 235667766443 Q ss_pred CcCCCCCCCceeEEEEccccccCCchH Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKL 271 (343) Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~ 271 (343) . .+ ...||.|+++.-+ ++..+. T Consensus 96 ~---~~-~~~~d~VvaNlPY-~Istpi 117 (294) T PTZ00338 96 K---TE-FPYFDVCVANVPY-QISSPL 117 (294) T ss_pred h---hc-ccccCEEEecCCc-ccCcHH Confidence 3 22 2368999887555 555543 No 177 >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... Probab=98.11 E-value=1.3e-05 Score=80.25 Aligned_cols=120 Identities=16% Similarity=0.213 Sum_probs=68.9 Q ss_pred hHHHHHHHHHhcCCC----CCCeEEEEcCCcCHHHHHHHHHc----CCCceEEEEcChhHHHHHHHHhc-ccCCCCCCCc Q 019282 166 GRDVFEFLAEASHIT----PNSHVLEIGCGTLRVGVHFIRYL----NPENFHCLERDELSLMAAFRYEL-PSQGLLHKRP 236 (343) Q Consensus 166 ~~~~~~~l~~~~~l~----~~~rVLDIGCGtG~~a~~la~~~----~~~~~~vvdid~s~~~~a~a~~~-~~~~~~~~~~ 236 (343) .+.+.+.+.+...-. ++..|||||||+|-+....+++. ....+++++-++...... +++ ...+. .+++ T Consensus 167 e~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l--~~~v~~n~w-~~~V 243 (448) T PF05185_consen 167 ERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTL--QKRVNANGW-GDKV 243 (448) T ss_dssp HHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHH--HHHHHHTTT-TTTE T ss_pred HHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHH--HHHHHhcCC-CCeE Confidence 344555555554433 35789999999999988777643 123455555444333322 222 23344 3478 Q ss_pred EEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEE Q 019282 237 IIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFV 292 (343) Q Consensus 237 ~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi 292 (343) .++.+ +..++....+.|+||+=.+=.....+...+.|....|.||| ||.++= T Consensus 244 ~vi~~---d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp-~Gi~IP 295 (448) T PF05185_consen 244 TVIHG---DMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP-DGIMIP 295 (448) T ss_dssp EEEES----TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE-EEEEES T ss_pred EEEeC---cccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC-CCEEeC Confidence 88887 44444455699999984332222233444578889999999 988763 No 178 >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] Probab=98.11 E-value=0.00013 Score=64.32 Aligned_cols=135 Identities=15% Similarity=0.064 Sum_probs=81.7 Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343) Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343) ..++.... ..+.-.+..|+|+|||||.+++..+- ++...+.++|+|+.....+.++ ... ....+.++.+ |. T Consensus 32 a~il~~a~-~~g~l~g~~V~DlG~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N--~~~--l~g~v~f~~~---dv 102 (198) T COG2263 32 AYILWVAY-LRGDLEGKTVLDLGAGTGILAIGAAL-LGASRVLAVDIDPEALEIARAN--AEE--LLGDVEFVVA---DV 102 (198) T ss_pred HHHHHHHH-HcCCcCCCEEEEcCCCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHH--HHh--hCCceEEEEc---ch Confidence 33444333 23444577899999999999987764 5666778888888777766443 332 2235666655 44 Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEe Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGK 321 (343) Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~ 321 (343) .++ .+.+|.++.+--|.-.....-..++.+..+.-+ +++-.|... ..+-+.+..+.+|+.+... T Consensus 103 ~~~--~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~----vVYsiH~a~-----~~~f~~~~~~~~G~~v~~~ 166 (198) T COG2263 103 SDF--RGKFDTVIMNPPFGSQRRHADRPFLLKALEISD----VVYSIHKAG-----SRDFVEKFAADLGGTVTHI 166 (198) T ss_pred hhc--CCccceEEECCCCccccccCCHHHHHHHHHhhh----eEEEeeccc-----cHHHHHHHHHhcCCeEEEE Confidence 433 368899998866643322111225555555433 222223211 3667778889999887654 No 179 >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] Probab=98.11 E-value=3.7e-05 Score=70.57 Aligned_cols=122 Identities=16% Similarity=0.246 Sum_probs=77.4 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343) -+.+++.|.. .+....|-|+|||.+.++..- ...++..|+-. .+.++..+ | T Consensus 168 ld~ii~~ik~---r~~~~vIaD~GCGEakiA~~~-----~~kV~SfDL~a----------------~~~~V~~c-----D 218 (325) T KOG3045|consen 168 LDVIIRKIKR---RPKNIVIADFGCGEAKIASSE-----RHKVHSFDLVA----------------VNERVIAC-----D 218 (325) T ss_pred HHHHHHHHHh---CcCceEEEecccchhhhhhcc-----ccceeeeeeec----------------CCCceeec-----c Confidence 4556666653 245678999999999886511 12344444321 12233333 3 Q ss_pred cCCCC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHHHHHhcCCcEEEeee Q 019282 246 FTKFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 246 l~~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~~L~~aGf~~v~~~~ 323 (343) +.+.+ .+++.|++++...+ ++. .+..++.+++|+|+| ||.++|..- ..++. ...+...|...||....... T Consensus 219 m~~vPl~d~svDvaV~CLSL--Mgt-n~~df~kEa~RiLk~-gG~l~IAEv---~SRf~dv~~f~r~l~~lGF~~~~~d~ 291 (325) T KOG3045|consen 219 MRNVPLEDESVDVAVFCLSL--MGT-NLADFIKEANRILKP-GGLLYIAEV---KSRFSDVKGFVRALTKLGFDVKHKDV 291 (325) T ss_pred ccCCcCccCcccEEEeeHhh--hcc-cHHHHHHHHHHHhcc-CceEEEEeh---hhhcccHHHHHHHHHHcCCeeeehhh Confidence 33332 47899999987665 222 344599999999999 999999841 11222 45588889999998776553 No 180 >TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase Probab=98.10 E-value=3.5e-05 Score=71.52 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=59.2 Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343) ....+.+.+.+...+.++.+|||||||+|.++..+++..+ .++++++|...... +++.... ..++.++.++.. T Consensus 13 ~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~--l~~~~~~---~~~v~v~~~D~~ 85 (253) T TIGR00755 13 IDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEI--LRKLLSL---YERLEVIEGDAL 85 (253) T ss_pred CCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHH--HHHHhCc---CCcEEEEECchh Confidence 4456777788777888889999999999999999998653 36666666654443 3332211 234556655433 Q ss_pred CcCCCCCCCcee---EEEEccccccCCch Q 019282 245 DFTKFGSGVVYD---LIYASAVFLHMPDK 270 (343) Q Consensus 245 dl~~~~~~~~fD---lIvs~~v~~hl~~~ 270 (343) .++ .. .|| .|+++..+ |+..+ T Consensus 86 ~~~---~~-~~d~~~~vvsNlPy-~i~~~ 109 (253) T TIGR00755 86 KVD---LP-DFPKQLKVVSNLPY-NISSP 109 (253) T ss_pred cCC---hh-HcCCcceEEEcCCh-hhHHH Confidence 332 22 456 77776554 44443 No 181 >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] Probab=98.09 E-value=5.2e-05 Score=71.49 Aligned_cols=118 Identities=21% Similarity=0.209 Sum_probs=79.5 Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc--CCCCCCCcEEEecccCCcCCCCCCCce Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS--QGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343) Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~--~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343) +..+ .+||-||.|.|.++..++++.+...++.++||+.-...+.. .+.. .+..+.++.++.++...+-.- ...+| T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~-~l~~~~~~~~dpRv~i~i~Dg~~~v~~-~~~~f 150 (282) T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARK-YLPEPSGGADDPRVEIIIDDGVEFLRD-CEEKF 150 (282) T ss_pred CCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHH-hccCcccccCCCceEEEeccHHHHHHh-CCCcC Confidence 3344 59999999999999999998888889999999976665532 2222 122245666665544444322 23489 Q ss_pred eEEEEccccccCCc---hHHHHHHHHHHhccCCCCcEEEEEecccccc Q 019282 256 DLIYASAVFLHMPD---KLVWVGLERLASKLRPYDGRIFVSHNIKFCS 300 (343) Q Consensus 256 DlIvs~~v~~hl~~---~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~ 300 (343) |+|+....=. .+. --...+++.++++|+| +|.++......+.. T Consensus 151 DvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~-~Gi~v~q~~~~~~~ 196 (282) T COG0421 151 DVIIVDSTDP-VGPAEALFTEEFYEGCRRALKE-DGIFVAQAGSPFLQ 196 (282) T ss_pred CEEEEcCCCC-CCcccccCCHHHHHHHHHhcCC-CcEEEEecCCcccc Confidence 9999865443 222 0123489999999999 99998875444443 No 182 >PLN02823 spermine synthase Probab=98.07 E-value=2.6e-05 Score=75.43 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=73.1 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc---CCCCCCCcEEEecccCCcCCCCCCCceeE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS---QGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~---~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343) ...+||.||+|.|..+..++++.+...++++++|+.....+ ++... ..+.+.++.++.++...+..- ..++||+ T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~la--r~~~~~~~~~~~dprv~v~~~Da~~~L~~-~~~~yDv 179 (336) T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFC--RKHLTVNREAFCDKRLELIINDARAELEK-RDEKFDV 179 (336) T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHH--HHhcccccccccCCceEEEEChhHHHHhh-CCCCccE Confidence 34689999999999999988866566788888888666655 33321 123345677776655554422 3568999 Q ss_pred EEEcccccc--CCc--hHHHHHHH-HHHhccCCCCcEEEEEe Q 019282 258 IYASAVFLH--MPD--KLVWVGLE-RLASKLRPYDGRIFVSH 294 (343) Q Consensus 258 Ivs~~v~~h--l~~--~~~~~~L~-~l~r~LkP~GG~lvi~~ 294 (343) |++-..-.. -+. -....+++ .+++.|+| ||.+++.. T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p-~Gvlv~q~ 220 (336) T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNP-GGIFVTQA 220 (336) T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCC-CcEEEEec Confidence 998632110 011 11234787 89999999 99987753 No 183 >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein. Probab=98.06 E-value=5.5e-05 Score=68.02 Aligned_cols=136 Identities=23% Similarity=0.245 Sum_probs=86.9 Q ss_pred hHHHHHHHHHhcCCCC----CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEec Q 019282 166 GRDVFEFLAEASHITP----NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRG 241 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~----~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~ 241 (343) .+.+++++.+.....+ ..++|||||=+......-. .-+.++-||..+ + ...+... T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~-----~~fdvt~IDLns------~--------~~~I~qq-- 90 (219) T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTS-----GWFDVTRIDLNS------Q--------HPGILQQ-- 90 (219) T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCccccc-----CceeeEEeecCC------C--------CCCceee-- Confidence 4557777776543322 2699999997654433211 123355555522 0 1112222 Q ss_pred ccCCcCCC----CCCCceeEEEEccccccCCch-HHHHHHHHHHhccCCCCcE-----EEEEeccccc--cC-CCHHHHH Q 019282 242 EDMDFTKF----GSGVVYDLIYASAVFLHMPDK-LVWVGLERLASKLRPYDGR-----IFVSHNIKFC--SR-LGGEECT 308 (343) Q Consensus 242 ~~~dl~~~----~~~~~fDlIvs~~v~~hl~~~-~~~~~L~~l~r~LkP~GG~-----lvi~~~~~~~--~~-~~~~~l~ 308 (343) ||.+. ...+.||+|+++.++.++|++ .+...+.++++.|+| +|. |++.-+..-. .+ .+.+.+. T Consensus 91 ---DFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~-~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~ 166 (219) T PF11968_consen 91 ---DFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKP-PGLSLFPSLFLVLPLPCVTNSRYMTEERLR 166 (219) T ss_pred ---ccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCC-CCccCcceEEEEeCchHhhcccccCHHHHH Confidence 33222 146789999999999999865 556789999999999 999 8776432211 12 2378999 Q ss_pred HHHHhcCCcEEEeeeccc Q 019282 309 KRLTSLGLEYIGKKTHDS 326 (343) Q Consensus 309 ~~L~~aGf~~v~~~~~~~ 326 (343) +.|+..||..+..+...- T Consensus 167 ~im~~LGf~~~~~~~~~K 184 (219) T PF11968_consen 167 EIMESLGFTRVKYKKSKK 184 (219) T ss_pred HHHHhCCcEEEEEEecCe Confidence 999999999988765443 No 184 >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. Probab=98.04 E-value=0.00014 Score=68.09 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=85.5 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC--CCCC-------------------CCcEEE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ--GLLH-------------------KRPIIV 239 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~--~~~~-------------------~~~~~~ 239 (343) .+.+||-=|||.||++..++. .++.+.+.+.|..|.-..+-..+. .... -+...+ T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~----~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270) T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAK----LGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270) T ss_pred CccEEEEcCCCcchHHHHHhh----ccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe Confidence 357899999999999999998 577788888887775533221110 0000 000000 Q ss_pred e---------------cccCCcCCCC-C---CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE------e Q 019282 240 R---------------GEDMDFTKFG-S---GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS------H 294 (343) Q Consensus 240 ~---------------~~~~dl~~~~-~---~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~------~ 294 (343) . -.+.||.+.. . .+.||+|+..+.+.- ......+|+.++++||| ||.. |. + T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkp-gG~W-IN~GPLlyh 207 (270) T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKP-GGYW-INFGPLLYH 207 (270) T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhcc-CCEE-EecCCcccc Confidence 0 0112333222 2 268999998855532 33455699999999999 9954 43 1 Q ss_pred cccc------ccCCCHHHHHHHHHhcCCcEEEeee Q 019282 295 NIKF------CSRLGGEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 295 ~~~~------~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343) ..+. -..++.+++...+++.||+.+..+. T Consensus 208 ~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270) T PF07942_consen 208 FEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270) T ss_pred CCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE Confidence 1121 1345589999999999999987665 No 185 >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] Probab=98.01 E-value=2.6e-05 Score=74.52 Aligned_cols=98 Identities=21% Similarity=0.187 Sum_probs=72.2 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEc Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343) -...+|+|.|.|+.+..+...++. +.+++.|......+ +.... .| +..+.+ .-|.+.+ .-|+|++- T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~-a~~~~-~g-----V~~v~g--dmfq~~P---~~daI~mk 243 (342) T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAA-APYLA-PG-----VEHVAG--DMFQDTP---KGDAIWMK 243 (342) T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhh-hhhhc-CC-----cceecc--cccccCC---CcCeEEEE Confidence 368999999999999999987754 66888887665444 22221 12 222222 1233322 34699999 Q ss_pred cccccCCchHHHHHHHHHHhccCCCCcEEEEEe Q 019282 262 AVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 262 ~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) +++||++|++...+|++|++.|+| ||.+++.. T Consensus 244 WiLhdwtDedcvkiLknC~~sL~~-~GkIiv~E 275 (342) T KOG3178|consen 244 WILHDWTDEDCVKILKNCKKSLPP-GGKIIVVE 275 (342) T ss_pred eecccCChHHHHHHHHHHHHhCCC-CCEEEEEe Confidence 999999999999999999999999 99998864 No 186 >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). Probab=98.00 E-value=0.00017 Score=69.30 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=74.1 Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCC----CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC---- Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNP----ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF---- 249 (343) Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~----~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~---- 249 (343) .++++..|+|+|||.|+=+..|++.+.. ..+..+||+...+..+.++ +.....+.-.+.-+.+ ++.+. T Consensus 73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~-L~~~~~p~l~v~~l~g---dy~~~l~~l 148 (319) T TIGR03439 73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAE-LPLGNFSHVRCAGLLG---TYDDGLAWL 148 (319) T ss_pred hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHh-hhhccCCCeEEEEEEe---cHHHHHhhc Confidence 3567779999999999999988887743 3477777777777666443 2212232212222333 33211 Q ss_pred C---CCCceeEEEEc-cccccCCchHHHHHHHHHHh-ccCCCCcEEEEE Q 019282 250 G---SGVVYDLIYAS-AVFLHMPDKLVWVGLERLAS-KLRPYDGRIFVS 293 (343) Q Consensus 250 ~---~~~~fDlIvs~-~v~~hl~~~~~~~~L~~l~r-~LkP~GG~lvi~ 293 (343) . ......+|+.- .++..+.+.+...+|+++++ .|+| ||.|+|. T Consensus 149 ~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~-~d~lLiG 196 (319) T TIGR03439 149 KRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP-SDSFLIG 196 (319) T ss_pred ccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC-CCEEEEe Confidence 1 12335666664 58999999888899999999 9999 9999886 No 187 >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. Probab=97.97 E-value=8.4e-05 Score=72.47 Aligned_cols=148 Identities=12% Similarity=0.096 Sum_probs=84.8 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343) ...+++.+.+.+...+ .+|||++||+|.+++.+++.. ..+++++++. .+.+.++++...+... ++.++.++..+ T Consensus 183 ~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~--~av~~a~~n~~~~~~~-~v~~~~~d~~~ 256 (353) T TIGR02143 183 NIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF--RRVLATEIAK--PSVNAAQYNIAANNID-NVQIIRMSAEE 256 (353) T ss_pred HHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC--CEEEEEECCH--HHHHHHHHHHHHcCCC-cEEEEEcCHHH Confidence 3456666665554333 479999999999999998864 3445555554 5555445443322222 46667665444 Q ss_pred cCCCC---------C-----CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHH Q 019282 246 FTKFG---------S-----GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRL 311 (343) Q Consensus 246 l~~~~---------~-----~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L 311 (343) +..-. . ...||+|+..-- .-+-. ..+++.+.+ | ++.+|++.+..-. ..++.. | T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~--~~~l~~l~~---~-~~ivYvsC~p~tl----aRDl~~-L 323 (353) T TIGR02143 257 FTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLD--PDTCKLVQA---Y-ERILYISCNPETL----KANLEQ-L 323 (353) T ss_pred HHHHHhhccccccccccccccCCCCEEEECCC--CCCCc--HHHHHHHHc---C-CcEEEEEcCHHHH----HHHHHH-H Confidence 32100 0 113798887432 11111 124555544 8 8999998642111 233443 3 Q ss_pred HhcCCcEEEeeeccccccc-hhH Q 019282 312 TSLGLEYIGKKTHDSLLFN-HYE 333 (343) Q Consensus 312 ~~aGf~~v~~~~~~~l~~~-~~e 333 (343) . .||+.......|++|.. |.| T Consensus 324 ~-~~Y~l~~v~~~DmFP~T~HvE 345 (353) T TIGR02143 324 S-ETHRVERFALFDQFPYTHHME 345 (353) T ss_pred h-cCcEEEEEEEcccCCCCCcEE Confidence 3 45999999999999974 455 No 188 >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] Probab=97.94 E-value=0.00011 Score=63.45 Aligned_cols=116 Identities=20% Similarity=0.234 Sum_probs=82.4 Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-CCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343) Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343) ..+.+....+...+.-|||+|.|||-++..++.+. ++..++.++.+.. .....++. .++ +.++.+++.++. T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~d--F~~~L~~~----~p~--~~ii~gda~~l~ 107 (194) T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPD--FVCHLNQL----YPG--VNIINGDAFDLR 107 (194) T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHH--HHHHHHHh----CCC--ccccccchhhHH Confidence 44455555677778899999999999999998754 4456667766653 33333321 222 235666656654 Q ss_pred CC---CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 248 KF---GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 248 ~~---~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .. ..+..||.|+|.--+..++......+|+.+...|.+ ||.++.- T Consensus 108 ~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~-gg~lvqf 155 (194) T COG3963 108 TTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA-GGPLVQF 155 (194) T ss_pred HHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC-CCeEEEE Confidence 11 146789999999888888888888899999999999 9998754 No 189 >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional Probab=97.92 E-value=5.8e-05 Score=74.27 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=76.8 Q ss_pred hccCCCccchHHHHHHHHHhcCCC-CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCC Q 019282 157 SNYGEPWAGGRDVFEFLAEASHIT-PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHK 234 (343) Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~l~-~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~ 234 (343) .||+......+.+...+.+..... ++.+|||++||+|..++.++...+...++++|+++.....+ +++.+ .+. . T Consensus 32 vFyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a--~~N~~~N~~-~- 107 (382) T PRK04338 32 VFYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELI--KKNLELNGL-E- 107 (382) T ss_pred eeeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHH--HHHHHHhCC-C- Confidence 355444445566666655544322 34689999999999999998866544566777766655544 33332 222 2 Q ss_pred CcEEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 235 RPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 235 ~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ...+..++...+... .+.||+|+..- + +.+.. ++....+.++| ||.++++ T Consensus 108 ~~~v~~~Da~~~l~~--~~~fD~V~lDP-~---Gs~~~--~l~~al~~~~~-~gilyvS 157 (382) T PRK04338 108 NEKVFNKDANALLHE--ERKFDVVDIDP-F---GSPAP--FLDSAIRSVKR-GGLLCVT 157 (382) T ss_pred ceEEEhhhHHHHHhh--cCCCCEEEECC-C---CCcHH--HHHHHHHHhcC-CCEEEEE Confidence 233444433222211 35799999864 2 33222 78887888999 9999998 No 190 >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... Probab=97.91 E-value=4.2e-05 Score=70.84 Aligned_cols=134 Identities=22% Similarity=0.230 Sum_probs=82.4 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc--CCCCCCCcEEEecccCCcCCCCCCC-ceeE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS--QGLLHKRPIIVRGEDMDFTKFGSGV-VYDL 257 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~--~~~~~~~~~~~~~~~~dl~~~~~~~-~fDl 257 (343) ...+||=||.|.|..+..++++.+...++++++|+.-...+... ... .+..+.++.++.++...+..- ..+ +||+ T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~-f~~~~~~~~d~r~~i~~~Dg~~~l~~-~~~~~yDv 153 (246) T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKY-FPEFSEGLDDPRVRIIIGDGRKFLKE-TQEEKYDV 153 (246) T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHH-THHHHTTGGSTTEEEEESTHHHHHHT-SSST-EEE T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHh-chhhccccCCCceEEEEhhhHHHHHh-ccCCcccE Confidence 56799999999999999998866567899999998766655321 221 223455677776654444322 234 8999 Q ss_pred EEEccccccCCch--HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCc Q 019282 258 IYASAVFLHMPDK--LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLE 317 (343) Q Consensus 258 Ivs~~v~~hl~~~--~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~ 317 (343) |+.-..-...+.. ....+++.+++.|+| ||.+++.....+........+.+.+++.... T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~-~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~ 214 (246) T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKP-DGVLVLQAGSPFLHPELFKSILKTLRSVFPQ 214 (246) T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEE-EEEEEEEEEETTTTHHHHHHHHHHHHTTSSE T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCC-CcEEEEEccCcccchHHHHHHHHHHHHhCCc Confidence 9984433222221 134589999999999 9999886532222211134455566666663 No 191 >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... Probab=97.86 E-value=0.00014 Score=65.51 Aligned_cols=118 Identities=15% Similarity=0.144 Sum_probs=62.0 Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHH-----hc-ccCCCCCCCcEEEec Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRY-----EL-PSQGLLHKRPIIVRG 241 (343) Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~-----~~-~~~~~~~~~~~~~~~ 241 (343) ..+..+.+..++.++...+|||||.|......+-..+.....++++.+.....+... +. ...+.....+.+..+ T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205) T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205) T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc Confidence 344555667789999999999999999999888776666677777777655443221 11 112222223344433 Q ss_pred ccCCcCCCCC----CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 242 EDMDFTKFGS----GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 242 ~~~dl~~~~~----~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) |+.+.+. -..-|+|+++... +. +.....|.++...||| |-+ +|+ T Consensus 109 ---dfl~~~~~~~~~s~AdvVf~Nn~~--F~-~~l~~~L~~~~~~lk~-G~~-IIs 156 (205) T PF08123_consen 109 ---DFLDPDFVKDIWSDADVVFVNNTC--FD-PDLNLALAELLLELKP-GAR-IIS 156 (205) T ss_dssp ----TTTHHHHHHHGHC-SEEEE--TT--T--HHHHHHHHHHHTTS-T-T-E-EEE T ss_pred ---CccccHhHhhhhcCCCEEEEeccc--cC-HHHHHHHHHHHhcCCC-CCE-EEE Confidence 4442210 1346999998765 22 3344467888889998 544 555 No 192 >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] Probab=97.84 E-value=0.0003 Score=65.18 Aligned_cols=139 Identities=19% Similarity=0.247 Sum_probs=88.5 Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343) Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343) +..|...+.+.||.+|||-|+|+|.++..+++...+ .+++-.++.......++ +++...++.+ ++.+...+....- T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~-eeFr~hgi~~-~vt~~hrDVc~~G- 170 (314) T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKAL-EEFREHGIGD-NVTVTHRDVCGSG- 170 (314) T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHH-HHHHHhCCCc-ceEEEEeecccCC- Confidence 466777789999999999999999999999998854 44566666554433332 2334455544 5555543222111 Q ss_pred CC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee Q 019282 249 FG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343) Q Consensus 249 ~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343) +. ....+|.|+. .+|.+.. .+-.+++.||. +|.-++++. +-+. -.+...+.|++.||..+..- T Consensus 171 F~~ks~~aDaVFL-----DlPaPw~--AiPha~~~lk~-~g~r~csFS-PCIE--Qvqrtce~l~~~gf~~i~~v 234 (314) T KOG2915|consen 171 FLIKSLKADAVFL-----DLPAPWE--AIPHAAKILKD-EGGRLCSFS-PCIE--QVQRTCEALRSLGFIEIETV 234 (314) T ss_pred ccccccccceEEE-----cCCChhh--hhhhhHHHhhh-cCceEEecc-HHHH--HHHHHHHHHHhCCCceEEEE Confidence 22 2456777755 6777765 78888889999 775545432 0000 03456678888999776643 No 193 >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] Probab=97.83 E-value=0.00037 Score=66.97 Aligned_cols=141 Identities=17% Similarity=0.160 Sum_probs=93.8 Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEec-c Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRG-E 242 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~-~ 242 (343) +--++...+.....+++|..|||==||||.++....- .++.++|.|....|..-++.+.+ -+.. ...+... + T Consensus 181 ~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl----~G~~viG~Did~~mv~gak~Nl~~y~i~--~~~~~~~~D 254 (347) T COG1041 181 MDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGL----MGARVIGSDIDERMVRGAKINLEYYGIE--DYPVLKVLD 254 (347) T ss_pred cCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhh----cCceEeecchHHHHHhhhhhhhhhhCcC--ceeEEEecc Confidence 4456667777778899999999999999999886655 56667777777777766655443 2221 2223332 4 Q ss_pred cCCcCCCCCCCceeEEEEcccccc-----CC--chHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC Q 019282 243 DMDFTKFGSGVVYDLIYASAVFLH-----MP--DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG 315 (343) Q Consensus 243 ~~dl~~~~~~~~fDlIvs~~v~~h-----l~--~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG 315 (343) +.+++ ++ +..+|.|++-.-+.- .. +.-....|+.+.++||+ ||++++..+ ......+++.| T Consensus 255 a~~lp-l~-~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~-gG~~vf~~p---------~~~~~~~~~~~ 322 (347) T COG1041 255 ATNLP-LR-DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKP-GGRIVFAAP---------RDPRHELEELG 322 (347) T ss_pred cccCC-CC-CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhc-CcEEEEecC---------CcchhhHhhcC Confidence 44444 43 446999998533211 11 23345689999999999 999988753 22345788999 Q ss_pred CcEEEeee Q 019282 316 LEYIGKKT 323 (343) Q Consensus 316 f~~v~~~~ 323 (343) |+++.... T Consensus 323 f~v~~~~~ 330 (347) T COG1041 323 FKVLGRFT 330 (347) T ss_pred ceEEEEEE Confidence 99887543 No 194 >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] Probab=97.82 E-value=0.00011 Score=73.44 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=99.6 Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343) ....+++...+.+...++.++||+=||.|.+++.+++.. ..++++++++.. .+.++++++.+... ++.+..+++. T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~a--V~~A~~NA~~n~i~-N~~f~~~~ae 351 (432) T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEA--VEAAQENAAANGID-NVEFIAGDAE 351 (432) T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHH--HHHHHHHHHHcCCC-cEEEEeCCHH Confidence 567788888888888888999999999999999999632 444555555544 44445544433333 4778877666 Q ss_pred CcCCCC-CCCceeEEEEccccccCCchHHH-HHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee Q 019282 245 DFTKFG-SGVVYDLIYASAVFLHMPDKLVW-VGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343) Q Consensus 245 dl~~~~-~~~~fDlIvs~~v~~hl~~~~~~-~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343) ++..-. ....+|.|+.. =|..-.. .+++.+.+ ++| ...+|++-+..-. ..+ ...|.+.|+++.+.. T Consensus 352 ~~~~~~~~~~~~d~VvvD-----PPR~G~~~~~lk~l~~-~~p-~~IvYVSCNP~Tl----aRD-l~~L~~~gy~i~~v~ 419 (432) T COG2265 352 EFTPAWWEGYKPDVVVVD-----PPRAGADREVLKQLAK-LKP-KRIVYVSCNPATL----ARD-LAILASTGYEIERVQ 419 (432) T ss_pred HHhhhccccCCCCEEEEC-----CCCCCCCHHHHHHHHh-cCC-CcEEEEeCCHHHH----HHH-HHHHHhCCeEEEEEE Confidence 665332 23578999873 2222222 24555544 556 6889888531111 222 346788999999999 Q ss_pred eccccccc-hhH Q 019282 323 THDSLLFN-HYE 333 (343) Q Consensus 323 ~~~~l~~~-~~e 333 (343) ..|++|+. |.| T Consensus 420 ~~DmFP~T~HvE 431 (432) T COG2265 420 PFDMFPHTHHVE 431 (432) T ss_pred EeccCCCccccC Confidence 99999986 454 No 195 >PRK00536 speE spermidine synthase; Provisional Probab=97.82 E-value=0.0002 Score=66.79 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=79.7 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHh-ccc--CCCCCCCcEEEecccCCcCCCCCCCcee Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYE-LPS--QGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~-~~~--~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343) +...+||=||.|.|..++.++++- ..++.++||+...... ++ +.. .++.+.++.++. .+.+. ..++|| T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~--k~~lP~~~~~~~DpRv~l~~----~~~~~-~~~~fD 141 (262) T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSF--ISFFPHFHEVKNNKNFTHAK----QLLDL-DIKKYD 141 (262) T ss_pred CCCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHH--HHHCHHHHHhhcCCCEEEee----hhhhc-cCCcCC Confidence 345799999999999999999863 3788999998555444 43 222 344555655552 22211 236899 Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343) Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343) +|+.-..+ + ..+++.++++|+| ||.++......+.....-..+.+.+++ .|..+. T Consensus 142 VIIvDs~~----~---~~fy~~~~~~L~~-~Gi~v~Qs~sp~~~~~~~~~i~~~l~~-~F~~v~ 196 (262) T PRK00536 142 LIICLQEP----D---IHKIDGLKRMLKE-DGVFISVAKHPLLEHVSMQNALKNMGD-FFSIAM 196 (262) T ss_pred EEEEcCCC----C---hHHHHHHHHhcCC-CcEEEECCCCcccCHHHHHHHHHHHHh-hCCceE Confidence 99987543 2 2378999999999 999988654444321113344455555 687443 No 196 >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... Probab=97.81 E-value=8.9e-05 Score=68.86 Aligned_cols=69 Identities=20% Similarity=0.320 Sum_probs=51.2 Q ss_pred CceeEEEEccccccCCc--hHHHHHHHHHHhccCCCCcEEEEEecc----------cc-ccCCCHHHHHHHHHhcCCcEE Q 019282 253 VVYDLIYASAVFLHMPD--KLVWVGLERLASKLRPYDGRIFVSHNI----------KF-CSRLGGEECTKRLTSLGLEYI 319 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~--~~~~~~L~~l~r~LkP~GG~lvi~~~~----------~~-~~~~~~~~l~~~L~~aGf~~v 319 (343) .+||+|++.+.++.... +.-...++++.++||| ||.|++..-. .| .-....+.+++.|+++||.++ T Consensus 157 ~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp-GG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~ 235 (256) T PF01234_consen 157 PKFDCVISSFCLESACKDLDEYRRALRNISSLLKP-GGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIE 235 (256) T ss_dssp SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE-EEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEE T ss_pred cchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC-CcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEE Confidence 35999999999987633 3445689999999999 9999886211 11 222348999999999999988 Q ss_pred Eee Q 019282 320 GKK 322 (343) Q Consensus 320 ~~~ 322 (343) ..+ T Consensus 236 ~~~ 238 (256) T PF01234_consen 236 DLE 238 (256) T ss_dssp EEE T ss_pred ecc Confidence 877 No 197 >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. Probab=97.80 E-value=0.00014 Score=69.32 Aligned_cols=147 Identities=20% Similarity=0.253 Sum_probs=83.7 Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-------CCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEe Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-------NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVR 240 (343) Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-------~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~ 240 (343) .+.+++.+.+...++.+|||-+||+|.+...+.+++ ....+++.++++.....+..+-.. .+.......... T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~~i~~ 111 (311) T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNINIIQ 111 (311) T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGCEEEE T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hccccccccccc Confidence 355666666677788899999999999998888754 556677888877666555432211 222221222343 Q ss_pred cccCCcCCCCCCCceeEEEEccccccC--C-----------------chHHHHHHHHHHhccCCCCcEEEEEeccccccC Q 019282 241 GEDMDFTKFGSGVVYDLIYASAVFLHM--P-----------------DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSR 301 (343) Q Consensus 241 ~~~~dl~~~~~~~~fDlIvs~~v~~hl--~-----------------~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~ 301 (343) ++...-........||+|+++--+--. . ......++..+.+.|++ ||++.+..+..+... T Consensus 112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~-~G~~~~Ilp~~~L~~ 190 (311) T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP-GGRAAIILPNGFLFS 190 (311) T ss_dssp S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE-EEEEEEEEEHHHHHG T ss_pred cccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc-ccceeEEecchhhhc Confidence 322222211124689999997444222 0 01122488999999999 999876654443322 Q ss_pred CC-HHHHHHHHHhcCC Q 019282 302 LG-GEECTKRLTSLGL 316 (343) Q Consensus 302 ~~-~~~l~~~L~~aGf 316 (343) -+ ...+++.|.+.+. T Consensus 191 ~~~~~~iR~~ll~~~~ 206 (311) T PF02384_consen 191 SSSEKKIRKYLLENGY 206 (311) T ss_dssp STHHHHHHHHHHHHEE T ss_pred cchHHHHHHHHHhhch Confidence 22 4677777765543 No 198 >PRK04148 hypothetical protein; Provisional Probab=97.79 E-value=0.00021 Score=59.93 Aligned_cols=97 Identities=21% Similarity=0.182 Sum_probs=56.8 Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCH-HHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLR-VGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343) Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~-~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343) +.++|.+.....++.+|||||||+|. ++..|++ .+..++++|.++.....+++. ....+.+ |+. T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~----~G~~ViaIDi~~~aV~~a~~~--------~~~~v~d---Dlf 68 (134) T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKE----SGFDVIVIDINEKAVEKAKKL--------GLNAFVD---DLF 68 (134) T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHH----CCCEEEEEECCHHHHHHHHHh--------CCeEEEC---cCC Confidence 44556655555567899999999996 8877776 344555555554444433321 1223333 332 Q ss_pred C--CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCC Q 019282 248 K--FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRP 285 (343) Q Consensus 248 ~--~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP 285 (343) + ...-+.+|+|++.. |.++.+..+.++.+.+.- T Consensus 69 ~p~~~~y~~a~liysir-----pp~el~~~~~~la~~~~~ 103 (134) T PRK04148 69 NPNLEIYKNAKLIYSIR-----PPRDLQPFILELAKKINV 103 (134) T ss_pred CCCHHHHhcCCEEEEeC-----CCHHHHHHHHHHHHHcCC Confidence 2 22346799999964 344555566667666553 No 199 >TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. Probab=97.78 E-value=0.0001 Score=65.53 Aligned_cols=107 Identities=17% Similarity=0.121 Sum_probs=63.3 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCC-CCCC-CceeE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTK-FGSG-VVYDL 257 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~-~~~~-~~fDl 257 (343) ++.+|||++||+|.+++.++.... ..++.++.+....... +++.+ .+. ..++.++.++..++.. .... ..||+ T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~--~~N~~~~~~-~~~~~~~~~D~~~~l~~~~~~~~~~dv 124 (189) T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTL--KENLALLKS-GEQAEVVRNSALRALKFLAKKPTFDNV 124 (189) T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHH--HHHHHHhCC-cccEEEEehhHHHHHHHhhccCCCceE Confidence 578999999999999999987532 3566666666555444 33322 222 2245566664433321 1112 24788 Q ss_pred EEEccccccCCchHHHHHHHHHH--hccCCCCcEEEEEec Q 019282 258 IYASAVFLHMPDKLVWVGLERLA--SKLRPYDGRIFVSHN 295 (343) Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~--r~LkP~GG~lvi~~~ 295 (343) |+..--+.. . .....++.+. .+|++ +|.+++.+. T Consensus 125 v~~DPPy~~-~--~~~~~l~~l~~~~~l~~-~~iiv~E~~ 160 (189) T TIGR00095 125 IYLDPPFFN-G--ALQALLELCENNWILED-TVLIVVEED 160 (189) T ss_pred EEECcCCCC-C--cHHHHHHHHHHCCCCCC-CeEEEEEec Confidence 877655532 1 1223455553 47899 998888764 No 200 >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed Probab=97.76 E-value=0.00025 Score=71.57 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=69.6 Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCC-ceEEEEcChhHHHHHHHHhc-ccCCCCCCCcEEEecccCCcCCCCCCCce Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPE-NFHCLERDELSLMAAFRYEL-PSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343) Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~-~~~vvdid~s~~~~a~a~~~-~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343) +..++.+|||+++|+|.=+.+++..+.+. .++..|++....... +++ .+.|+. ++.....+...+... ..+.| T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L--~~nl~r~G~~--nv~v~~~D~~~~~~~-~~~~f 184 (470) T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVL--HANISRCGVS--NVALTHFDGRVFGAA-LPETF 184 (470) T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHH--HHHHHHcCCC--eEEEEeCchhhhhhh-chhhc Confidence 66889999999999999999999987654 345555555444333 332 224442 344444433333222 24579 Q ss_pred eEEEE----c--cccccCCch--------------HHHHHHHHHHhccCCCCcEEEEE Q 019282 256 DLIYA----S--AVFLHMPDK--------------LVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 256 DlIvs----~--~v~~hl~~~--------------~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) |.|+. + +++..-++. ....+|....+.||| ||+|+.+ T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp-GG~LVYS 241 (470) T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP-GGTLVYS 241 (470) T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC-CcEEEEE Confidence 99994 3 334332221 124688999999999 9999765 No 201 >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] Probab=97.74 E-value=0.00055 Score=59.87 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=79.2 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343) ..-+||||||+|..+-.++.... +.-+.++|+.+............ .+. ....+.. |+...-..++.|+++. T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-n~~---~~~~V~t---dl~~~l~~~~VDvLvf 116 (209) T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-NRV---HIDVVRT---DLLSGLRNESVDVLVF 116 (209) T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-cCC---ccceeeh---hHHhhhccCCccEEEE Confidence 56799999999999999988664 34455777777665543222111 111 2233332 3332223478888888 Q ss_pred ccccccCC-------------------chHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE Q 019282 261 SAVFLHMP-------------------DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343) Q Consensus 261 ~~v~~hl~-------------------~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343) +--+.--+ ..-.+.++..+-..|.| .|++|+.. +....+.++.+.+++.||.+.. T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp-~Gv~Ylv~----~~~N~p~ei~k~l~~~g~~~~~ 190 (209) T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSP-RGVFYLVA----LRANKPKEILKILEKKGYGVRI 190 (209) T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCc-CceEEeee----hhhcCHHHHHHHHhhcccceeE Confidence 74332111 11134567777788999 99999863 2334588888999999998654 No 202 >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. Probab=97.72 E-value=0.00035 Score=61.85 Aligned_cols=139 Identities=22% Similarity=0.216 Sum_probs=84.9 Q ss_pred HHHHHHHhcCCCCCC-eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCc Q 019282 169 VFEFLAEASHITPNS-HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDF 246 (343) Q Consensus 169 ~~~~l~~~~~l~~~~-rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl 246 (343) +++-+.-...++... +++|||+|.|.=++.++-..|...++.+|-. ....++-+.... -++. ++..+.++.++ T Consensus 35 i~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~--~KK~~FL~~~~~~L~L~--nv~v~~~R~E~- 109 (184) T PF02527_consen 35 ILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESV--GKKVAFLKEVVRELGLS--NVEVINGRAEE- 109 (184) T ss_dssp HHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESS--HHHHHHHHHHHHHHT-S--SEEEEES-HHH- T ss_pred HHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCC--chHHHHHHHHHHHhCCC--CEEEEEeeecc- Confidence 455554444455444 8999999999999999988887776666644 344443333222 3442 46667665554 Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343) ......||+|++..+- +.. .+++-+...+++ ||.++.-.+...... .++....+...|.+...... T Consensus 110 --~~~~~~fd~v~aRAv~----~l~--~l~~~~~~~l~~-~G~~l~~KG~~~~~E--l~~~~~~~~~~~~~~~~v~~ 175 (184) T PF02527_consen 110 --PEYRESFDVVTARAVA----PLD--KLLELARPLLKP-GGRLLAYKGPDAEEE--LEEAKKAWKKLGLKVLSVPE 175 (184) T ss_dssp --TTTTT-EEEEEEESSS----SHH--HHHHHHGGGEEE-EEEEEEEESS--HHH--HHTHHHHHHCCCEEEEEEEE T ss_pred --cccCCCccEEEeehhc----CHH--HHHHHHHHhcCC-CCEEEEEcCCChHHH--HHHHHhHHHHhCCEEeeecc Confidence 2245799999998655 222 378889999999 999988754222110 33445556667776665443 No 203 >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] Probab=97.72 E-value=0.0002 Score=68.74 Aligned_cols=143 Identities=13% Similarity=0.111 Sum_probs=92.7 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHH----HhcccCCCCCCCcEEEecccCCcCCCCCCCce Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFR----YELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a----~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343) +.-.+||-+|.|.|..+..+.++..-.+++.+|+|+.+...+.. +........+.++..+..++..+..- ..+.| T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~-a~~~f 366 (508) T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT-AADMF 366 (508) T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh-hcccc Confidence 33468999999999999999986556788999999866655431 11122234456777776655555422 35689 Q ss_pred eEEEEccccc---cCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeec Q 019282 256 DLIYASAVFL---HMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTH 324 (343) Q Consensus 256 DlIvs~~v~~---hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343) |.|+...-=. -+..-....+..-+.+.|++ +|.+++..+..|.....--.+..-++++||.+.-.+.| T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e-~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~ 437 (508) T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAE-TGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVH 437 (508) T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCc-CceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEe Confidence 9998732110 01111223477788999999 99999986555543322223456688999988776655 No 204 >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. Probab=97.70 E-value=0.00065 Score=59.86 Aligned_cols=144 Identities=15% Similarity=0.075 Sum_probs=86.1 Q ss_pred cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCc---------eEEEEcChhHHHHHHHHhcccCCCCCC Q 019282 164 AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPEN---------FHCLERDELSLMAAFRYELPSQGLLHK 234 (343) Q Consensus 164 ~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~---------~~vvdid~s~~~~a~a~~~~~~~~~~~ 234 (343) ++...+...++.....+++..|||-=||+|.+.+..+....... +.+.|++......+..+. ...+.. . T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~-~~ag~~-~ 88 (179) T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENL-KAAGVE-D 88 (179) T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHH-HHTT-C-G T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHH-HhcccC-C Confidence 34556777777778888999999999999999988776554444 678888887766554332 224442 2 Q ss_pred CcEEEecccCCcCCCCCCCceeEEEEccccccC-Cc-----hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHH Q 019282 235 RPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHM-PD-----KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECT 308 (343) Q Consensus 235 ~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl-~~-----~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~ 308 (343) .+.+.+.+..+++ . .++.+|.|+++.-+..- +. .-...+++++.+++++ ..+++++.. ..+. T Consensus 89 ~i~~~~~D~~~l~-~-~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~---------~~~~ 156 (179) T PF01170_consen 89 YIDFIQWDARELP-L-PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN---------RELE 156 (179) T ss_dssp GEEEEE--GGGGG-G-TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC---------CCHH T ss_pred ceEEEecchhhcc-c-ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC---------HHHH Confidence 4556655444444 1 46799999998666432 21 1123567889999998 555555432 2356 Q ss_pred HHHHhcCCcEEEe Q 019282 309 KRLTSLGLEYIGK 321 (343) Q Consensus 309 ~~L~~aGf~~v~~ 321 (343) +.+...+++.... T Consensus 157 ~~~~~~~~~~~~~ 169 (179) T PF01170_consen 157 KALGLKGWRKRKL 169 (179) T ss_dssp HHHTSTTSEEEEE T ss_pred HHhcchhhceEEE Confidence 6677777765543 No 205 >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] Probab=97.69 E-value=6e-05 Score=73.49 Aligned_cols=107 Identities=23% Similarity=0.222 Sum_probs=76.7 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC-CCCCc Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF-GSGVV 254 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~-~~~~~ 254 (343) ..+.++..++|+|||-|.....++.. . ...++|++.+..+....+.... .++.+... ++.+ ++... .+++. T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f-~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~-~~~~---~~~~~~fedn~ 178 (364) T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVF-K--KAGVVGLDNNAYEAFRANELAKKAYLDNKCN-FVVA---DFGKMPFEDNT 178 (364) T ss_pred hcCcccccccccCcCcCchhHHHHHh-c--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcc-eehh---hhhcCCCCccc Confidence 45677889999999999999988774 2 2346677776666665544322 33333222 2322 33322 25789 Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ||.+.+..+..|.++... ++++++++++| ||+++.. T Consensus 179 fd~v~~ld~~~~~~~~~~--~y~Ei~rv~kp-GG~~i~~ 214 (364) T KOG1269|consen 179 FDGVRFLEVVCHAPDLEK--VYAEIYRVLKP-GGLFIVK 214 (364) T ss_pred cCcEEEEeecccCCcHHH--HHHHHhcccCC-CceEEeH Confidence 999999999999999887 99999999999 9998764 No 206 >COG4798 Predicted methyltransferase [General function prediction only] Probab=97.67 E-value=0.0004 Score=61.35 Aligned_cols=143 Identities=13% Similarity=0.109 Sum_probs=84.7 Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHH----------HHHHHHhcccCCCCCCCcEEEecccCC Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL----------MAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343) Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~----------~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343) ..+++++..|.|+=-|.|.++..|..+....+ +|...-+... +.+.+++ .... ++..+.. . T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e----~~~a-N~e~~~~---~ 113 (238) T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAARE----PVYA-NVEVIGK---P 113 (238) T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhh----hhhh-hhhhhCC---c Confidence 46899999999999999999999999887666 4444433322 1111111 1111 1111111 1 Q ss_pred cCCCCCCCceeEEEEccccccC-----CchHHHHHHHHHHhccCCCCcEEEEEeccccc----------cCCCHHHHHHH Q 019282 246 FTKFGSGVVYDLIYASAVFLHM-----PDKLVWVGLERLASKLRPYDGRIFVSHNIKFC----------SRLGGEECTKR 310 (343) Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl-----~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~----------~~~~~~~l~~~ 310 (343) +..+...+..|+++.....|.+ .......+...+++.||| ||++++.++.... ....+...... T Consensus 114 ~~A~~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP-GGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~ 192 (238) T COG4798 114 LVALGAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP-GGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAE 192 (238) T ss_pred ccccCCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCC-CcEEEEEeccccCCCChhhhhhhcccChHHHHHH Confidence 1112233455555554333322 233444588999999999 9999887543321 12237788888 Q ss_pred HHhcCCcEEEeeeccccc Q 019282 311 LTSLGLEYIGKKTHDSLL 328 (343) Q Consensus 311 L~~aGf~~v~~~~~~~l~ 328 (343) .+++||+..........+ T Consensus 193 veaaGFkl~aeS~ilaNp 210 (238) T COG4798 193 VEAAGFKLEAESEILANP 210 (238) T ss_pred HHhhcceeeeeehhhcCC Confidence 999999987665543333 No 207 >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] Probab=97.65 E-value=0.00028 Score=69.40 Aligned_cols=153 Identities=17% Similarity=0.099 Sum_probs=88.5 Q ss_pred CccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEe Q 019282 162 PWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVR 240 (343) Q Consensus 162 ~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~ 240 (343) +|--+|.....+.+. .. |++||++=|=||.++.+.+.. +....+.+|++. .....++++.+ .++......++. T Consensus 201 fFlDqR~~R~~l~~~--~~-GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~--~al~~a~~N~~LNg~~~~~~~~i~ 274 (393) T COG1092 201 FFLDQRDNRRALGEL--AA-GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSK--RALEWARENAELNGLDGDRHRFIV 274 (393) T ss_pred eeHHhHHHHHHHhhh--cc-CCeEEEecccCcHHHHHHHhc-CCCceEEEeccH--HHHHHHHHHHHhcCCCccceeeeh Confidence 343345555555432 33 899999999999999988872 223444555544 44444455544 455455667887 Q ss_pred cccCCcCCCC--CCCceeEEEEcc-ccc------cCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHHH Q 019282 241 GEDMDFTKFG--SGVVYDLIYASA-VFL------HMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTKR 310 (343) Q Consensus 241 ~~~~dl~~~~--~~~~fDlIvs~~-v~~------hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~~ 310 (343) +++..+.... .+.+||+|+.-- .|- .-.......++..+.++|+| ||.++.+.........- .+.+.+. T Consensus 275 ~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p-gG~l~~~s~~~~~~~~~f~~~i~~a 353 (393) T COG1092 275 GDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP-GGTLVTSSCSRHFSSDLFLEIIARA 353 (393) T ss_pred hhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCC-CCEEEEEecCCccCHHHHHHHHHHH Confidence 7665553221 245899999742 111 11112334578889999999 99998875322111000 3344445 Q ss_pred HHhcCCcEEEe Q 019282 311 LTSLGLEYIGK 321 (343) Q Consensus 311 L~~aGf~~v~~ 321 (343) +...|...... T Consensus 354 ~~~~~~~~~~~ 364 (393) T COG1092 354 AAAAGRRAQEI 364 (393) T ss_pred HHhcCCcEEEe Confidence 55566555444 No 208 >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] Probab=97.60 E-value=0.00098 Score=53.50 Aligned_cols=102 Identities=25% Similarity=0.323 Sum_probs=56.6 Q ss_pred EEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCC-cEEEecccCC-cCCCCCCCceeEEEEcc Q 019282 185 VLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKR-PIIVRGEDMD-FTKFGSGVVYDLIYASA 262 (343) Q Consensus 185 VLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~-~~~~~~~~~d-l~~~~~~~~fDlIvs~~ 262 (343) +||+|||+|... .+..... ....++++|.+..+....+..... .... +.+..++... ...+.....||++.+.. T Consensus 52 ~ld~~~g~g~~~-~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (257) T COG0500 52 VLDIGCGTGRLA-LLARLGG-RGAYVVGVDLSPEMLALARARAEG--AGLGLVDFVVADALGGVLPFEDSASFDLVISLL 127 (257) T ss_pred eEEecCCcCHHH-HHHHhCC-CCceEEEEeCCHHHHHHHHhhhhh--cCCCceEEEEeccccCCCCCCCCCceeEEeeee Confidence 999999999976 3333222 223455566666555543321111 1111 2334332222 12121114899994444 Q ss_pred ccccCCchHHHHHHHHHHhccCCCCcEEEEEe Q 019282 263 VFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 263 v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) ..++.. ....+.++.+.++| +|.+++.. T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~-~g~~~~~~ 155 (257) T COG0500 128 VLHLLP---PAKALRELLRVLKP-GGRLVLSD 155 (257) T ss_pred ehhcCC---HHHHHHHHHHhcCC-CcEEEEEe Confidence 444444 33489999999999 99998874 No 209 >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... Probab=97.59 E-value=0.0028 Score=57.41 Aligned_cols=144 Identities=16% Similarity=0.159 Sum_probs=86.7 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHH--HHHhcccCCCCCCCcEEEecccCCcCCCC-CC Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAA--FRYELPSQGLLHKRPIIVRGEDMDFTKFG-SG 252 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a--~a~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~ 252 (343) .++++|.+||-+|..+|....++.+-.+ ...+++++.++.....- .++++ . ++.-+-+++-.-..+. .- T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R------~-NIiPIl~DAr~P~~Y~~lv 141 (229) T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR------P-NIIPILEDARHPEKYRMLV 141 (229) T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS------T-TEEEEES-TTSGGGGTTTS T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC------C-ceeeeeccCCChHHhhccc Confidence 5678999999999999999999999876 44567888887654332 22221 1 3443433332222232 23 Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCC-CH----HHHHHHHHhcCCcEEEeeecccc Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRL-GG----EECTKRLTSLGLEYIGKKTHDSL 327 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~-~~----~~l~~~L~~aGf~~v~~~~~~~l 327 (343) +..|+|++.-. .+.+..-++.++...||+ ||.+++.......... .+ .+-.+.|++.||+.++.....++ T Consensus 142 ~~VDvI~~DVa----Qp~Qa~I~~~Na~~fLk~-gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy 216 (229) T PF01269_consen 142 EMVDVIFQDVA----QPDQARIAALNARHFLKP-GGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPY 216 (229) T ss_dssp --EEEEEEE-S----STTHHHHHHHHHHHHEEE-EEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTT T ss_pred ccccEEEecCC----ChHHHHHHHHHHHhhccC-CcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCC Confidence 58999988421 223344478888899999 9999987432222111 11 12245678889999998887777 Q ss_pred ccchh Q 019282 328 LFNHY 332 (343) Q Consensus 328 ~~~~~ 332 (343) -..|. T Consensus 217 ~~dH~ 221 (229) T PF01269_consen 217 ERDHA 221 (229) T ss_dssp STTEE T ss_pred CCCcE Confidence 76664 No 210 >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] Probab=97.59 E-value=0.00064 Score=63.17 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=64.2 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343) ...+++.+.+..++.++..|||||+|.|.++..|++.. ..++++++|......- ++... ...+..++.+|+.. T Consensus 15 d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L--~~~~~---~~~n~~vi~~DaLk 87 (259) T COG0030 15 DKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVL--KERFA---PYDNLTVINGDALK 87 (259) T ss_pred CHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHH--HHhcc---cccceEEEeCchhc Confidence 45678888888899999999999999999999999854 3467777777543332 33221 23367777764444 Q ss_pred cCCCCCCC--ceeEEEEccccccCCch Q 019282 246 FTKFGSGV--VYDLIYASAVFLHMPDK 270 (343) Q Consensus 246 l~~~~~~~--~fDlIvs~~v~~hl~~~ 270 (343) +. ... .++.|+++--+ ++..+ T Consensus 88 ~d---~~~l~~~~~vVaNlPY-~Issp 110 (259) T COG0030 88 FD---FPSLAQPYKVVANLPY-NISSP 110 (259) T ss_pred Cc---chhhcCCCEEEEcCCC-cccHH Confidence 33 333 67888887555 55554 No 211 >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] Probab=97.56 E-value=0.00078 Score=60.98 Aligned_cols=140 Identities=23% Similarity=0.226 Sum_probs=87.8 Q ss_pred HHHHHHHHhcCCCC-CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC Q 019282 168 DVFEFLAEASHITP-NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343) Q Consensus 168 ~~~~~l~~~~~l~~-~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343) .+++-+.-...... +.+++|||+|.|.=+..++-..+..+++.+| ......++-+.... -++ +++.++.+++++ T Consensus 53 HilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLle--s~~Kk~~FL~~~~~eL~L--~nv~i~~~RaE~ 128 (215) T COG0357 53 HILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLE--SLGKKIAFLREVKKELGL--ENVEIVHGRAEE 128 (215) T ss_pred HHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEc--cCchHHHHHHHHHHHhCC--CCeEEehhhHhh Confidence 35555544334444 6899999999999999998777777655554 44444554444332 233 357777776676 Q ss_pred cCCCCCCCc-eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee Q 019282 246 FTKFGSGVV-YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 246 l~~~~~~~~-fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343) +..- .. ||+|++..+. + ....++-+...+|+ ||.++.-....... -..+........|+.+..... T Consensus 129 ~~~~---~~~~D~vtsRAva----~--L~~l~e~~~pllk~-~g~~~~~k~~~~~~--e~~e~~~a~~~~~~~~~~~~~ 195 (215) T COG0357 129 FGQE---KKQYDVVTSRAVA----S--LNVLLELCLPLLKV-GGGFLAYKGLAGKD--ELPEAEKAILPLGGQVEKVFS 195 (215) T ss_pred cccc---cccCcEEEeehcc----c--hHHHHHHHHHhccc-CCcchhhhHHhhhh--hHHHHHHHHHhhcCcEEEEEE Confidence 6532 23 9999998665 1 22267778999999 99875432111110 034556667778888776554 No 212 >KOG3201 consensus Uncharacterized conserved protein [Function unknown] Probab=97.55 E-value=8e-05 Score=63.85 Aligned_cols=156 Identities=14% Similarity=0.167 Sum_probs=89.2 Q ss_pred ccchHHHHHHHHHhcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCC--CCcEEE Q 019282 163 WAGGRDVFEFLAEASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLH--KRPIIV 239 (343) Q Consensus 163 ~~~~~~~~~~l~~~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~--~~~~~~ 239 (343) |+..+.+...+.+....-.+.+|||+|.| ||..++.++.+.+...+.++|=........ ++....+... .....+ T Consensus 11 wpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv--~ki~~~n~~s~~tsc~vl 88 (201) T KOG3201|consen 11 WPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNV--EKIRNSNMASSLTSCCVL 88 (201) T ss_pred cccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHH--HHHHhcccccccceehhh Confidence 33334444445544455557899999999 666777777777777777877554433222 2111111111 011000 Q ss_pred ecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE Q 019282 240 RGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343) Q Consensus 240 ~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343) .-....-........||.|++...+. + ++......+.++..|+| .|..++..+ .+..+.+.+.+...+.||.+. T Consensus 89 rw~~~~aqsq~eq~tFDiIlaADClF-f-dE~h~sLvdtIk~lL~p-~g~Al~fsP---RRg~sL~kF~de~~~~gf~v~ 162 (201) T KOG3201|consen 89 RWLIWGAQSQQEQHTFDIILAADCLF-F-DEHHESLVDTIKSLLRP-SGRALLFSP---RRGQSLQKFLDEVGTVGFTVC 162 (201) T ss_pred HHHHhhhHHHHhhCcccEEEeccchh-H-HHHHHHHHHHHHHHhCc-ccceeEecC---cccchHHHHHHHHHhceeEEE Confidence 00000000011345899999988762 2 33344589999999999 888665532 111226777888889999987 Q ss_pred Eeeeccc Q 019282 320 GKKTHDS 326 (343) Q Consensus 320 ~~~~~~~ 326 (343) -...++. T Consensus 163 l~enyde 169 (201) T KOG3201|consen 163 LEENYDE 169 (201) T ss_pred ecccHhH Confidence 7665544 No 213 >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] Probab=97.50 E-value=0.00062 Score=61.68 Aligned_cols=119 Identities=21% Similarity=0.227 Sum_probs=81.2 Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCc-eEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecc Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPEN-FHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGE 242 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~-~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~ 242 (343) ++.+...++.....+-..+++||||.=||.-++.+|..+|..+ ++.++++....... .+..+ +|. ...+.++.+. T Consensus 57 v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~--~~~~k~agv-~~KI~~i~g~ 133 (237) T KOG1663|consen 57 VGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG--LELVKLAGV-DHKITFIEGP 133 (237) T ss_pred cChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh--HHHHHhccc-cceeeeeecc Confidence 3455555555555666778999999999999999999887643 45666666555544 33333 343 4467777775 Q ss_pred cCCc-----CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 243 DMDF-----TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 243 ~~dl-----~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +.+. .+. ..++||.++.- |..+... ++++++.+++++ ||++++- T Consensus 134 a~esLd~l~~~~-~~~tfDfaFvD----adK~nY~-~y~e~~l~Llr~-GGvi~~D 182 (237) T KOG1663|consen 134 ALESLDELLADG-ESGTFDFAFVD----ADKDNYS-NYYERLLRLLRV-GGVIVVD 182 (237) T ss_pred hhhhHHHHHhcC-CCCceeEEEEc----cchHHHH-HHHHHHHhhccc-ccEEEEe Confidence 4442 222 35789999874 4444333 699999999999 9999875 No 214 >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional Probab=97.40 E-value=0.0025 Score=61.35 Aligned_cols=118 Identities=13% Similarity=0.136 Sum_probs=74.3 Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343) Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343) +.++.++|||||++|.++..+++ .+..|+++|..++..... .+.++....++...+. +..+.+|.+ T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~----rG~~V~AVD~g~l~~~L~--------~~~~V~h~~~d~fr~~--p~~~~vDwv 274 (357) T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVR----RGMFVTAVDNGPMAQSLM--------DTGQVEHLRADGFKFR--PPRKNVDWL 274 (357) T ss_pred cCCCCEEEEeCCCCcHHHHHHHH----cCCEEEEEechhcCHhhh--------CCCCEEEEeccCcccC--CCCCCCCEE Confidence 46889999999999999999998 455788888655433322 2235666655443333 125689999 Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCC--cEEEEEeccccccCCC-----HHHHHHHHHhcCCc Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYD--GRIFVSHNIKFCSRLG-----GEECTKRLTSLGLE 317 (343) Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~G--G~lvi~~~~~~~~~~~-----~~~l~~~L~~aGf~ 317 (343) +|-.+- .+.. +.+-+.+.|.. | ...+++-..+...+|. .+.+.+.|.++|.. T Consensus 275 VcDmve----~P~r--va~lm~~Wl~~-g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~~ 333 (357) T PRK11760 275 VCDMVE----KPAR--VAELMAQWLVN-GWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGIN 333 (357) T ss_pred EEeccc----CHHH--HHHHHHHHHhc-CcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCc Confidence 996442 3333 67888888886 3 1234443222222332 44567778788874 No 215 >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional Probab=97.39 E-value=0.00042 Score=65.77 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=54.6 Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343) Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343) ++.+.+.+.+.++..+||.+||.|..+..+++.++ ...++++|.| +.+.+.+++.... ..++.++.++-.++.. T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D--~~al~~ak~~L~~---~~ri~~i~~~f~~l~~ 82 (296) T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRD--PDAIAAAKDRLKP---FGRFTLVHGNFSNLKE 82 (296) T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCC--HHHHHHHHHhhcc---CCcEEEEeCCHHHHHH Confidence 34455556677888999999999999999999875 3444455555 4555555543322 2366777663333322 Q ss_pred CCCC--CceeEEEEc Q 019282 249 FGSG--VVYDLIYAS 261 (343) Q Consensus 249 ~~~~--~~fDlIvs~ 261 (343) .... .++|.|++. T Consensus 83 ~l~~~~~~vDgIl~D 97 (296) T PRK00050 83 VLAEGLGKVDGILLD 97 (296) T ss_pred HHHcCCCccCEEEEC Confidence 2112 279999875 No 216 >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. Probab=97.35 E-value=0.0027 Score=65.17 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=71.6 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCC--------CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC--CcCCC Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNP--------ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM--DFTKF 249 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~--------~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~--dl~~~ 249 (343) ...+|||.|||+|.+...+++.+.. ..++++|+|+.....+ +.+.. .+.. ......++.. .+... T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a--~~~l~~~~~~--~~~i~~~d~l~~~~~~~ 106 (524) T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRA--KKLLGEFALL--EINVINFNSLSYVLLNI 106 (524) T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHH--HHHHhhcCCC--Cceeeeccccccccccc Confidence 4569999999999999999886632 3345666666554443 32211 1100 1111111101 01000 Q ss_pred -CCCCceeEEEEccccccCCc--h------------------------------------------HHHHHH-HHHHhcc Q 019282 250 -GSGVVYDLIYASAVFLHMPD--K------------------------------------------LVWVGL-ERLASKL 283 (343) Q Consensus 250 -~~~~~fDlIvs~~v~~hl~~--~------------------------------------------~~~~~L-~~l~r~L 283 (343) ...+.||+|+++--+.-... . ....++ +.+.+.| T Consensus 107 ~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL 186 (524) T TIGR02987 107 ESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIA 186 (524) T ss_pred ccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhc Confidence 11357999999854432210 0 000133 5688999 Q ss_pred CCCCcEEEEEeccccccCCCHHHHHHHHHhc Q 019282 284 RPYDGRIFVSHNIKFCSRLGGEECTKRLTSL 314 (343) Q Consensus 284 kP~GG~lvi~~~~~~~~~~~~~~l~~~L~~a 314 (343) +| ||++.+..+..+...-....+++.+.+. T Consensus 187 ~~-~G~~~~I~P~s~l~~~~~~~lR~~ll~~ 216 (524) T TIGR02987 187 NK-NGYVSIISPASWLGDKTGENLREYIFNN 216 (524) T ss_pred CC-CCEEEEEEChHHhcCccHHHHHHHHHhC Confidence 99 9999877655555544566777766443 No 217 >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] Probab=97.34 E-value=0.0051 Score=60.09 Aligned_cols=157 Identities=17% Similarity=0.108 Sum_probs=91.2 Q ss_pred CCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhc-ccCCCCCCCcEEE Q 019282 161 EPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYEL-PSQGLLHKRPIIV 239 (343) Q Consensus 161 ~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~-~~~~~~~~~~~~~ 239 (343) +.+..+..-.......++..+|.+|||...+.|.=+.+++....+.+..++.+|.+.......+.+ .+.|.. ++..+ T Consensus 136 G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~--nv~~~ 213 (355) T COG0144 136 GLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR--NVIVV 213 (355) T ss_pred eEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC--ceEEE Confidence 333444444444445578999999999999999999999998876444444444444333322322 234443 23444 Q ss_pred ecccCCcCCCCC-CCceeEEEEc------cccccCCch--------------HHHHHHHHHHhccCCCCcEEEEEecccc Q 019282 240 RGEDMDFTKFGS-GVVYDLIYAS------AVFLHMPDK--------------LVWVGLERLASKLRPYDGRIFVSHNIKF 298 (343) Q Consensus 240 ~~~~~dl~~~~~-~~~fDlIvs~------~v~~hl~~~--------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~ 298 (343) ..++..+.+... .++||.|+.- ++++--|+. ...++|....+.||| ||.|+.+.= .. T Consensus 214 ~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~-GG~LVYSTC-S~ 291 (355) T COG0144 214 NKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP-GGVLVYSTC-SL 291 (355) T ss_pred ecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEcc-CC Confidence 443333433322 2359999963 344221221 134689999999999 999987630 00 Q ss_pred ccCCCHHHHHHHHHhc-CCcEEEe Q 019282 299 CSRLGGEECTKRLTSL-GLEYIGK 321 (343) Q Consensus 299 ~~~~~~~~l~~~L~~a-Gf~~v~~ 321 (343) ...-+++.+...|++. +|+.+.. T Consensus 292 ~~eENE~vV~~~L~~~~~~~~~~~ 315 (355) T COG0144 292 TPEENEEVVERFLERHPDFELEPV 315 (355) T ss_pred chhcCHHHHHHHHHhCCCceeecc Confidence 0011256666777765 6665543 No 218 >KOG1331 consensus Predicted methyltransferase [General function prediction only] Probab=97.28 E-value=0.00051 Score=64.06 Aligned_cols=99 Identities=20% Similarity=0.210 Sum_probs=64.9 Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343) Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343) ...+..+||+|||.|..+. . ...+..++-|.+.....-+++ .+ ......++...++ + .+.+||.+ T Consensus 43 ~~~gsv~~d~gCGngky~~---~---~p~~~~ig~D~c~~l~~~ak~------~~-~~~~~~ad~l~~p-~-~~~s~d~~ 107 (293) T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLG---V---NPLCLIIGCDLCTGLLGGAKR------SG-GDNVCRADALKLP-F-REESFDAA 107 (293) T ss_pred cCCcceeeecccCCcccCc---C---CCcceeeecchhhhhcccccc------CC-CceeehhhhhcCC-C-CCCccccc Confidence 4458899999999986632 1 123446666666555543322 11 1123333334444 2 36799999 Q ss_pred EEccccccCCch-HHHHHHHHHHhccCCCCcEEEEE Q 019282 259 YASAVFLHMPDK-LVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 259 vs~~v~~hl~~~-~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +++.++||+... ....+++++.++++| ||...+. T Consensus 108 lsiavihhlsT~~RR~~~l~e~~r~lrp-gg~~lvy 142 (293) T KOG1331|consen 108 LSIAVIHHLSTRERRERALEELLRVLRP-GGNALVY 142 (293) T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhcC-CCceEEE Confidence 999999999553 445689999999999 9986654 No 219 >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. Probab=97.27 E-value=0.0012 Score=62.51 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=80.6 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343) +|....++... ..+.+|||+=|=||.++.+.+.. +.. .++.+|.|....+.++++.. .++......++..+.. T Consensus 111 qR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~g-GA~--~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf 184 (286) T PF10672_consen 111 QRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAG-GAK--EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF 184 (286) T ss_dssp GHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHT-TES--EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH T ss_pred HHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHC-CCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH Confidence 45555555543 35789999999999999987762 222 35556666666666565544 4444446667766544 Q ss_pred CcCC-CCCCCceeEEEEcc-ccc----cCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC Q 019282 245 DFTK-FGSGVVYDLIYASA-VFL----HMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG 315 (343) Q Consensus 245 dl~~-~~~~~~fDlIvs~~-v~~----hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG 315 (343) ++.. ....++||+|++-- .|- .+ ......++..+.++|+| ||.++.+.... +.+.+.+.+.+.+++ T Consensus 185 ~~l~~~~~~~~fD~IIlDPPsF~k~~~~~-~~~y~~L~~~a~~ll~~-gG~l~~~scs~---~i~~~~l~~~~~~~a 256 (286) T PF10672_consen 185 KFLKRLKKGGRFDLIILDPPSFAKSKFDL-ERDYKKLLRRAMKLLKP-GGLLLTCSCSH---HISPDFLLEAVAEAA 256 (286) T ss_dssp HHHHHHHHTT-EEEEEE--SSEESSTCEH-HHHHHHHHHHHHHTEEE-EEEEEEEE--T---TS-HHHHHHHHHHHH T ss_pred HHHHHHhcCCCCCEEEECCCCCCCCHHHH-HHHHHHHHHHHHHhcCC-CCEEEEEcCCc---ccCHHHHHHHHHHhC Confidence 4321 11246899999841 110 11 12334578899999999 99998764322 233566777666655 No 220 >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. Probab=97.27 E-value=0.0011 Score=59.50 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=60.2 Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343) Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343) .+.++..|||.-||.|.+++.+++......+++.|+.+...... ++..+.+-....+..+.++..++. ..+.||. T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L--~~Ni~lNkv~~~i~~~~~D~~~~~---~~~~~dr 172 (200) T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYL--KENIRLNKVENRIEVINGDAREFL---PEGKFDR 172 (200) T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHH--HHHHHHTT-TTTEEEEES-GGG------TT-EEE T ss_pred cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHH--HHHHHHcCCCCeEEEEcCCHHHhc---CccccCE Confidence 36789999999999999999999865555566666666544433 333332223346667776555554 3679999 Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEE Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRI 290 (343) Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~l 290 (343) |++...-. . ..+|..+.+++++ ||.+ T Consensus 173 vim~lp~~--~----~~fl~~~~~~~~~-~g~i 198 (200) T PF02475_consen 173 VIMNLPES--S----LEFLDAALSLLKE-GGII 198 (200) T ss_dssp EEE--TSS--G----GGGHHHHHHHEEE-EEEE T ss_pred EEECChHH--H----HHHHHHHHHHhcC-CcEE Confidence 99864221 1 1278889999999 8876 No 221 >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] Probab=97.27 E-value=0.0015 Score=60.66 Aligned_cols=89 Identities=21% Similarity=0.225 Sum_probs=58.3 Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCC-CCCcEEEecccCC Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLL-HKRPIIVRGEDMD 245 (343) Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~-~~~~~~~~~~~~d 245 (343) -.+++.|.+..+++++..|||||.|||.++..+++. +.+|+.++..+.|.+.-.++. +|.+ .....++.+ | T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~----~kkVvA~E~Dprmvael~krv-~gtp~~~kLqV~~g---D 115 (315) T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA----GKKVVAVEIDPRMVAELEKRV-QGTPKSGKLQVLHG---D 115 (315) T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh----cCeEEEEecCcHHHHHHHHHh-cCCCccceeeEEec---c Confidence 457788888899999999999999999999999983 334554444445555443322 2332 124455555 4 Q ss_pred cCCCCCCCceeEEEEcccc Q 019282 246 FTKFGSGVVYDLIYASAVF 264 (343) Q Consensus 246 l~~~~~~~~fDlIvs~~v~ 264 (343) +...+ .-.||.++++.-+ T Consensus 116 ~lK~d-~P~fd~cVsNlPy 133 (315) T KOG0820|consen 116 FLKTD-LPRFDGCVSNLPY 133 (315) T ss_pred cccCC-CcccceeeccCCc Confidence 43222 2479999986554 No 222 >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... Probab=97.24 E-value=0.00089 Score=58.65 Aligned_cols=139 Identities=14% Similarity=0.036 Sum_probs=67.0 Q ss_pred HHHHHHhcC-CCC--CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc Q 019282 170 FEFLAEASH-ITP--NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343) Q Consensus 170 ~~~l~~~~~-l~~--~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343) +..+.+..+ +.+ +.+|||+||++|.++..+.+.. .....++++|..+.... +. . ..+.. .+... .....+ T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~-~~~~~v~avDl~~~~~~--~~-~-~~i~~-d~~~~-~~~~~i 81 (181) T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRG-GPAGRVVAVDLGPMDPL--QN-V-SFIQG-DITNP-ENIKDI 81 (181) T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTST-TTEEEEEEEESSSTGS---TT-E-EBTTG-GGEEE-EHSHHG T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecc-cccceEEEEeccccccc--cc-e-eeeec-ccchh-hHHHhh Confidence 334444455 554 4899999999999999998854 12355666665443110 00 0 01111 11111 011122 Q ss_pred CCCCC--CCceeEEEEccccccCCch---------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC Q 019282 247 TKFGS--GVVYDLIYASAVFLHMPDK---------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG 315 (343) Q Consensus 247 ~~~~~--~~~fDlIvs~~v~~hl~~~---------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG 315 (343) .+... .+.||+|++-..+....+. .....+.-+.+.|+| ||.+++-... ..... ++...+.. . T Consensus 82 ~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~-gG~~v~K~~~---~~~~~-~~~~~l~~-~ 155 (181) T PF01728_consen 82 RKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP-GGTFVIKVFK---GPEIE-ELIYLLKR-C 155 (181) T ss_dssp GGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT-TEEEEEEESS---STTSH-HHHHHHHH-H T ss_pred hhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC-CCEEEEEecc---CccHH-HHHHHHHh-C Confidence 22211 2689999997744332221 122345556678999 9998876422 11112 45444443 5 Q ss_pred CcEEEe Q 019282 316 LEYIGK 321 (343) Q Consensus 316 f~~v~~ 321 (343) |+.+.. T Consensus 156 F~~v~~ 161 (181) T PF01728_consen 156 FSKVKI 161 (181) T ss_dssp HHHEEE T ss_pred CeEEEE Confidence 554443 No 223 >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] Probab=97.23 E-value=0.00018 Score=64.06 Aligned_cols=94 Identities=18% Similarity=0.247 Sum_probs=63.2 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEc Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343) +.++||+|.|.|..+..++..+. .++.++++. -|....++ .+. ++.-. .+.. ..+-+||+|.|. T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe--evyATElS~--tMr~rL~k---k~y---nVl~~----~ew~--~t~~k~dli~cl 176 (288) T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE--EVYATELSW--TMRDRLKK---KNY---NVLTE----IEWL--QTDVKLDLILCL 176 (288) T ss_pred CeeEEeccCCCcchhhhhcchHH--HHHHHHhhH--HHHHHHhh---cCC---ceeee----hhhh--hcCceeehHHHH Confidence 46899999999999999887653 344554443 34432222 122 22111 1111 134579999999 Q ss_pred cccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 262 AVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 262 ~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .++.-.-++-. .|+.++.+|.|.+|+++++ T Consensus 177 NlLDRc~~p~k--LL~Di~~vl~psngrviva 206 (288) T KOG3987|consen 177 NLLDRCFDPFK--LLEDIHLVLAPSNGRVIVA 206 (288) T ss_pred HHHHhhcChHH--HHHHHHHHhccCCCcEEEE Confidence 99877766655 8999999999988988775 No 224 >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] Probab=97.18 E-value=0.007 Score=55.27 Aligned_cols=141 Identities=18% Similarity=0.166 Sum_probs=86.6 Q ss_pred hHHHHHHHHHhcCC-CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC Q 019282 166 GRDVFEFLAEASHI-TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343) Q Consensus 166 ~~~~~~~l~~~~~l-~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343) +-..+....+...+ .++..+||||.-||+++..+.+. +...++++|+....+....+ .+.++..... . T Consensus 63 G~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR--------~d~rV~~~E~--t 131 (245) T COG1189 63 GGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLR--------NDPRVIVLER--T 131 (245) T ss_pred HHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHh--------cCCcEEEEec--C Confidence 33344444444454 45788999999999999999883 23455666665544333332 1224444432 3 Q ss_pred CcCCCC---CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc------ccCCC-----------H Q 019282 245 DFTKFG---SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF------CSRLG-----------G 304 (343) Q Consensus 245 dl~~~~---~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~------~~~~~-----------~ 304 (343) ++..+. ..+..|+|++--.|.. ...+|..+..+++| +|.++.-....| ...-| . T Consensus 132 N~r~l~~~~~~~~~d~~v~DvSFIS-----L~~iLp~l~~l~~~-~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~ 205 (245) T COG1189 132 NVRYLTPEDFTEKPDLIVIDVSFIS-----LKLILPALLLLLKD-GGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVL 205 (245) T ss_pred ChhhCCHHHcccCCCeEEEEeehhh-----HHHHHHHHHHhcCC-CceEEEEecchhhhhhhhcCcCceecCcchHHHHH Confidence 333221 2346789998666632 23379999999999 888876532222 11111 6 Q ss_pred HHHHHHHHhcCCcEEEeee Q 019282 305 EECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 305 ~~l~~~L~~aGf~~v~~~~ 323 (343) ..+.+++.+.||++..... T Consensus 206 ~~i~~~~~~~g~~~~gl~~ 224 (245) T COG1189 206 SKIENFAKELGFQVKGLIK 224 (245) T ss_pred HHHHHHHhhcCcEEeeeEc Confidence 7788888999999887664 No 225 >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] Probab=97.17 E-value=0.0025 Score=57.32 Aligned_cols=116 Identities=17% Similarity=0.100 Sum_probs=72.1 Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343) Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343) +.+.+.+.+. .+|.|||+||-|-|...-.+.++-+ ...+++.- .+...+..+.... ....+++...+..+|..+ T Consensus 90 iMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~--hp~V~krmr~~gw--~ek~nViil~g~WeDvl~ 163 (271) T KOG1709|consen 90 IMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEA--HPDVLKRMRDWGW--REKENVIILEGRWEDVLN 163 (271) T ss_pred HHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCC-cceEEEec--CHHHHHHHHhccc--ccccceEEEecchHhhhc Confidence 3343443333 5688999999999988877666433 44445443 3333433333221 122367777776666544 Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) --+++.||.|+--..-++.. +.+.+.+.+.++||| +|++-.. T Consensus 164 ~L~d~~FDGI~yDTy~e~yE--dl~~~hqh~~rLLkP-~gv~Syf 205 (271) T KOG1709|consen 164 TLPDKHFDGIYYDTYSELYE--DLRHFHQHVVRLLKP-EGVFSYF 205 (271) T ss_pred cccccCcceeEeechhhHHH--HHHHHHHHHhhhcCC-CceEEEe Confidence 33678899998654334433 345689999999999 9998554 No 226 >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. Probab=97.12 E-value=0.0057 Score=55.12 Aligned_cols=124 Identities=19% Similarity=0.174 Sum_probs=80.2 Q ss_pred EEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEcccc Q 019282 185 VLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVF 264 (343) Q Consensus 185 VLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~ 264 (343) |.||||-.|.+...|++.-....++.+|+.+.++..+..+ ....++. .++....++. +..+.+.+..|.|+..+|= T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~-i~~~~l~-~~i~~rlgdG--L~~l~~~e~~d~ivIAGMG 76 (205) T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKEN-IAKYGLE-DRIEVRLGDG--LEVLKPGEDVDTIVIAGMG 76 (205) T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHH-HHHTT-T-TTEEEEE-SG--GGG--GGG---EEEEEEE- T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH-HHHcCCc-ccEEEEECCc--ccccCCCCCCCEEEEecCC Confidence 6899999999999999966556678889999888877543 2334443 3666666633 3333333347888876543 Q ss_pred ccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee Q 019282 265 LHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 265 ~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343) .......|++....++. .-.|++.- ......++++|.+.||..+.... T Consensus 77 ----G~lI~~ILe~~~~~~~~-~~~lILqP------~~~~~~LR~~L~~~gf~I~~E~l 124 (205) T PF04816_consen 77 ----GELIIEILEAGPEKLSS-AKRLILQP------NTHAYELRRWLYENGFEIIDEDL 124 (205) T ss_dssp ----HHHHHHHHHHTGGGGTT---EEEEEE------SS-HHHHHHHHHHTTEEEEEEEE T ss_pred ----HHHHHHHHHhhHHHhcc-CCeEEEeC------CCChHHHHHHHHHCCCEEEEeEE Confidence 34455678888888887 66777763 23478899999999999877553 No 227 >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. Probab=97.05 E-value=0.0019 Score=62.93 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=80.3 Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343) ..+.+++.+.+.++..++ +|||+=||.|.+++.+++.. ..+.++++..+ +...|+++...+... ++.++.+++. T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~--av~~A~~Na~~N~i~-n~~f~~~~~~ 254 (352) T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEE--AVEDARENAKLNGID-NVEFIRGDAE 254 (352) T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HH--HHHHHHHHHHHTT---SEEEEE--SH T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHH--HHHHHHHHHHHcCCC-cceEEEeecc Confidence 467788888888887766 89999999999999999844 34445555554 444445444432222 5667665444 Q ss_pred CcCC-------C------C-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHH Q 019282 245 DFTK-------F------G-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKR 310 (343) Q Consensus 245 dl~~-------~------~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~ 310 (343) ++.. + . ....+|+|+..--=.-+. . .+++.+. ++ .=.+|++-+..-. ..++. . T Consensus 255 ~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~--~--~~~~~~~---~~-~~ivYvSCnP~tl----aRDl~-~ 321 (352) T PF05958_consen 255 DFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD--E--KVIELIK---KL-KRIVYVSCNPATL----ARDLK-I 321 (352) T ss_dssp HCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC--H--HHHHHHH---HS-SEEEEEES-HHHH----HHHHH-H T ss_pred chhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch--H--HHHHHHh---cC-CeEEEEECCHHHH----HHHHH-H Confidence 3321 0 0 122588887631000001 1 1344443 45 5566776421111 23343 3 Q ss_pred HHhcCCcEEEeeecccccc-chhHH Q 019282 311 LTSLGLEYIGKKTHDSLLF-NHYEI 334 (343) Q Consensus 311 L~~aGf~~v~~~~~~~l~~-~~~e~ 334 (343) |. .||++......|++|. .|.|. T Consensus 322 L~-~~y~~~~v~~~DmFP~T~HvE~ 345 (352) T PF05958_consen 322 LK-EGYKLEKVQPVDMFPQTHHVET 345 (352) T ss_dssp HH-CCEEEEEEEEE-SSTTSS--EE T ss_pred Hh-hcCEEEEEEEeecCCCCCcEEE Confidence 44 4999999999999997 45654 No 228 >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A. Probab=97.04 E-value=0.0059 Score=56.96 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=57.5 Q ss_pred CeEEEEcCC--cCHHHHHHHHHc-CCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC---------C-C Q 019282 183 SHVLEIGCG--TLRVGVHFIRYL-NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT---------K-F 249 (343) Q Consensus 183 ~rVLDIGCG--tG~~a~~la~~~-~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~---------~-~ 249 (343) ...|||||| |-.....+++.. +.+.+..+|.|+ ...++++.+...+ ......++.++.-+-. . + T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DP--vv~ah~ralL~~~-~~g~t~~v~aD~r~p~~iL~~p~~~~~l 146 (267) T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDP--VVLAHARALLADN-PRGRTAYVQADLRDPEAILAHPEVRGLL 146 (267) T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSH--HHHHCCHHHHTT--TTSEEEEEE--TT-HHHHHCSHHHHCC- T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCc--hHHHHHHhhhcCC-CCccEEEEeCCCCCHHHHhcCHHHHhcC Confidence 479999999 444555565544 556666777776 4455444433221 1112456655322210 0 1 Q ss_pred CCCCceeEEEEccccccCCc-hHHHHHHHHHHhccCCCCcEEEEEec Q 019282 250 GSGVVYDLIYASAVFLHMPD-KLVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~-~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) +.+ .-=.++.+.++||+++ ..-..++..+++.|.| |.+|+|+|. T Consensus 147 D~~-rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap-GS~L~ish~ 191 (267) T PF04672_consen 147 DFD-RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP-GSYLAISHA 191 (267) T ss_dssp -TT-S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T-T-EEEEEEE T ss_pred CCC-CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC-CceEEEEec Confidence 112 2236778899999987 5556799999999999 999999974 No 229 >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known. Probab=96.91 E-value=0.01 Score=51.64 Aligned_cols=141 Identities=17% Similarity=0.156 Sum_probs=88.6 Q ss_pred EcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHH---hcccCCCCCCCcEEEe-cccCCcCCCC--CCCceeEEEE Q 019282 188 IGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRY---ELPSQGLLHKRPIIVR-GEDMDFTKFG--SGVVYDLIYA 260 (343) Q Consensus 188 IGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~---~~~~~~~~~~~~~~~~-~~~~dl~~~~--~~~~fDlIvs 260 (343) ||=|.-.++..|++.+. ...++++..|........-. .+. ..+....+.... -++..+.... ..+.||.|+. T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl-~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166) T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENL-EELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166) T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHH-HHHhhcCCccccCCCCCcccccccccCCcCCEEEE Confidence 56677777888888776 66777887776543322111 000 011111122221 1334444332 3578999998 Q ss_pred ccccccCC-------------chHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeecccc Q 019282 261 SAVFLHMP-------------DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTHDSL 327 (343) Q Consensus 261 ~~v~~hl~-------------~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~~~l 327 (343) ++ .|.+ ..-...+|+.+.++|++ +|.+.|+..... .|..-.+.++.+++||..++...+++- T Consensus 82 NF--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~-~G~IhVTl~~~~--py~~W~i~~lA~~~gl~l~~~~~F~~~ 156 (166) T PF10354_consen 82 NF--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP-DGEIHVTLKDGQ--PYDSWNIEELAAEAGLVLVRKVPFDPS 156 (166) T ss_pred eC--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCCCC--CCccccHHHHHHhcCCEEEEEecCCHH Confidence 74 4555 12345688999999999 999999853221 133445667788999999999999988 Q ss_pred ccchhHH Q 019282 328 LFNHYEI 334 (343) Q Consensus 328 ~~~~~e~ 334 (343) .|+.|+. T Consensus 157 ~ypgY~~ 163 (166) T PF10354_consen 157 DYPGYEH 163 (166) T ss_pred HCCCccc Confidence 8888763 No 230 >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] Probab=96.88 E-value=0.06 Score=48.15 Aligned_cols=144 Identities=14% Similarity=0.109 Sum_probs=89.9 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC-CCC-CCCc Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT-KFG-SGVV 254 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~-~~~-~~~~ 254 (343) .++++|.+||=+|.-+|....+..+-.+...++++..++.+...-..-...+. ++.-+.+++ ..+ .+. .-+. T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~-----Ni~PIL~DA-~~P~~Y~~~Ve~ 145 (231) T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP-----NIIPILEDA-RKPEKYRHLVEK 145 (231) T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC-----Cceeeeccc-CCcHHhhhhccc Confidence 45789999999999999999999998775558899988876544332111111 222232221 222 111 1245 Q ss_pred eeEEEEccccccCCc-hHHHHHHHHHHhccCCCCcEEEEEeccccccCC-CHHH----HHHHHHhcCCcEEEeeeccccc Q 019282 255 YDLIYASAVFLHMPD-KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRL-GGEE----CTKRLTSLGLEYIGKKTHDSLL 328 (343) Q Consensus 255 fDlIvs~~v~~hl~~-~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~-~~~~----l~~~L~~aGf~~v~~~~~~~l~ 328 (343) .|+|+. .+.. .+..-+..++..-||+ ||.+++......+... .+++ -.+.|++.||+.++.-...++- T Consensus 146 VDviy~-----DVAQp~Qa~I~~~Na~~FLk~-~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePye 219 (231) T COG1889 146 VDVIYQ-----DVAQPNQAEILADNAEFFLKK-GGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPYE 219 (231) T ss_pred ccEEEE-----ecCCchHHHHHHHHHHHhccc-CCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCcc Confidence 788876 3433 3344467788999999 9988776322221111 1222 2346888999999888777776 Q ss_pred cchh Q 019282 329 FNHY 332 (343) Q Consensus 329 ~~~~ 332 (343) ..|+ T Consensus 220 ~DH~ 223 (231) T COG1889 220 KDHA 223 (231) T ss_pred cceE Confidence 6664 No 231 >COG3897 Predicted methyltransferase [General function prediction only] Probab=96.87 E-value=0.0036 Score=55.50 Aligned_cols=117 Identities=18% Similarity=0.294 Sum_probs=72.9 Q ss_pred ccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecc Q 019282 163 WAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGE 242 (343) Q Consensus 163 ~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~ 242 (343) |..+....+.+......-.+++|||+|.|+|..++..++. ....+..+|+++.. +.+.. -+.+++.. .+.+.. T Consensus 61 WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~-~~ai~-lNa~angv--~i~~~~-- 133 (218) T COG3897 61 WAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWL-EQAIR-LNAAANGV--SILFTH-- 133 (218) T ss_pred HhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHh-hhHHHHhcCCChHH-HHHhh-cchhhccc--eeEEee-- Confidence 4667778888887777888999999999999999877763 33445667777533 33322 22222221 233332 Q ss_pred cCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 243 DMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 243 ~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .|... .+..||+|+...++..-+.... ++. +++.++. .|..++. T Consensus 134 -~d~~g--~~~~~Dl~LagDlfy~~~~a~~--l~~-~~~~l~~-~g~~vlv 177 (218) T COG3897 134 -ADLIG--SPPAFDLLLAGDLFYNHTEADR--LIP-WKDRLAE-AGAAVLV 177 (218) T ss_pred -ccccC--CCcceeEEEeeceecCchHHHH--HHH-HHHHHHh-CCCEEEE Confidence 23332 4568999999988843333322 555 6666666 5665553 No 232 >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] Probab=96.86 E-value=0.014 Score=52.46 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=76.7 Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCC-ceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC- Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPE-NFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD- 245 (343) Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~-~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d- 245 (343) .+.+...+..-++++.+|+|+|+-+|.++..+++..... .+.++|+.+.. +...+.+++++-.+ T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~~iq~d~~~~ 97 (205) T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVIFLQGDITDE 97 (205) T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCceEEeeeccCc Confidence 334433333345778999999999999999999877543 25666665521 11135555542111 Q ss_pred -----cCCCCCCCceeEEEEcccc--------ccCCchH-HHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHH Q 019282 246 -----FTKFGSGVVYDLIYASAVF--------LHMPDKL-VWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRL 311 (343) Q Consensus 246 -----l~~~~~~~~fDlIvs~~v~--------~hl~~~~-~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L 311 (343) +.......++|+|++-... +|..... ....++-...+|+| ||.+++-. |... ..+++...+ T Consensus 98 ~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~-~G~fv~K~---fqg~-~~~~~l~~~ 172 (205) T COG0293 98 DTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP-GGSFVAKV---FQGE-DFEDLLKAL 172 (205) T ss_pred cHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC-CCeEEEEE---EeCC-CHHHHHHHH Confidence 0111123457999986544 3332211 22356667789999 99998763 1111 133343333 Q ss_pred HhcCCcEEEeeec Q 019282 312 TSLGLEYIGKKTH 324 (343) Q Consensus 312 ~~aGf~~v~~~~~ 324 (343) +..|+.+..... T Consensus 173 -~~~F~~v~~~KP 184 (205) T COG0293 173 -RRLFRKVKIFKP 184 (205) T ss_pred -HHhhceeEEecC Confidence 345666665543 No 233 >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] Probab=96.82 E-value=0.0049 Score=59.16 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=66.9 Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc---CCCCCCCcEEEeccc Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS---QGLLHKRPIIVRGED 243 (343) Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~---~~~~~~~~~~~~~~~ 243 (343) ..+..+.....--...+|||+|.|.|..+..+-.-+|. .....++.++ ...+....+.+ ....+.+..-+. T Consensus 100 asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp--~lrkV~~tl~~nv~t~~td~r~s~vt--- 174 (484) T COG5459 100 ASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP--ALRKVGDTLAENVSTEKTDWRASDVT--- 174 (484) T ss_pred HHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCH--HHHHHHHHHHhhcccccCCCCCCccc--- Confidence 33444444333333457999999999877665554443 2334444433 22222111111 001111111111 Q ss_pred CCcCCCCCCCceeEEEEccccccC-CchHHHHHHHHHHhccCCCCcEEEEEe Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHM-PDKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl-~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) ++-..++..+.|++|+...-+.+. .+..+..+++.+..++.| ||.|+|+. T Consensus 175 ~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~-gg~lVivE 225 (484) T COG5459 175 EDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAP-GGHLVIVE 225 (484) T ss_pred hhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccC-CCeEEEEe Confidence 233334456688888876655555 444566689999999999 99999984 No 234 >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. Probab=96.80 E-value=0.0012 Score=58.37 Aligned_cols=122 Identities=20% Similarity=0.314 Sum_probs=67.3 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343) .+.++..|... . -++.++||+=||+|.+++..+.. +...++.++.+......- +++.+ .+..+ ....+..+.. T Consensus 29 realFniL~~~-~-~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i--~~N~~~l~~~~-~~~v~~~d~~ 102 (183) T PF03602_consen 29 REALFNILQPR-N-LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKII--KKNLEKLGLED-KIRVIKGDAF 102 (183) T ss_dssp HHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHH--HHHHHHHT-GG-GEEEEESSHH T ss_pred HHHHHHHhccc-c-cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHH--HHHHHHhCCCc-ceeeeccCHH Confidence 34566666533 1 46889999999999999987753 224455666555444333 33322 23322 3444544322 Q ss_pred CcC-CC-CCCCceeEEEEccccccCCchHHHHHHHHHH--hccCCCCcEEEEEecc Q 019282 245 DFT-KF-GSGVVYDLIYASAVFLHMPDKLVWVGLERLA--SKLRPYDGRIFVSHNI 296 (343) Q Consensus 245 dl~-~~-~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~--r~LkP~GG~lvi~~~~ 296 (343) .+. .. .....||+|++.--+..- .. ...+++.+. .+|++ +|.+++.+.. T Consensus 103 ~~l~~~~~~~~~fDiIflDPPY~~~-~~-~~~~l~~l~~~~~l~~-~~~ii~E~~~ 155 (183) T PF03602_consen 103 KFLLKLAKKGEKFDIIFLDPPYAKG-LY-YEELLELLAENNLLNE-DGLIIIEHSK 155 (183) T ss_dssp HHHHHHHHCTS-EEEEEE--STTSC-HH-HHHHHHHHHHTTSEEE-EEEEEEEEET T ss_pred HHHHhhcccCCCceEEEECCCcccc-hH-HHHHHHHHHHCCCCCC-CEEEEEEecC Confidence 221 11 135789999997655322 21 234777776 89999 9999998753 No 235 >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional Probab=96.77 E-value=0.015 Score=61.84 Aligned_cols=126 Identities=10% Similarity=-0.000 Sum_probs=73.1 Q ss_pred cchHHHHHHHHHhcCC-CCCCeEEEEcCCcCHHHHHHHHHcC-------------------------------------- Q 019282 164 AGGRDVFEFLAEASHI-TPNSHVLEIGCGTLRVGVHFIRYLN-------------------------------------- 204 (343) Q Consensus 164 ~~~~~~~~~l~~~~~l-~~~~rVLDIGCGtG~~a~~la~~~~-------------------------------------- 204 (343) ++.+.+...++...+. +++..++|-.||+|.+.+..+.... T Consensus 172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702) T PRK11783 172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702) T ss_pred CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc Confidence 4566677777766665 5678999999999999988765210 Q ss_pred ----CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEcccccc-CCc-hHHHHHHH Q 019282 205 ----PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLH-MPD-KLVWVGLE 277 (343) Q Consensus 205 ----~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~h-l~~-~~~~~~L~ 277 (343) ...++++|+|+.....+ +++.. .|+. ..+.+..++..++......++||+|+++--+.. +++ .....+.. T Consensus 252 ~~~~~~~i~G~Did~~av~~A--~~N~~~~g~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~ 328 (702) T PRK11783 252 LAELPSKFYGSDIDPRVIQAA--RKNARRAGVA-ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYS 328 (702) T ss_pred ccccCceEEEEECCHHHHHHH--HHHHHHcCCC-cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHH Confidence 11355666665555444 44433 4443 356666664444432212357999999865532 222 22222333 Q ss_pred H---HHhccCCCCcEEEEE Q 019282 278 R---LASKLRPYDGRIFVS 293 (343) Q Consensus 278 ~---l~r~LkP~GG~lvi~ 293 (343) . ..+...| |+.+++. T Consensus 329 ~lg~~lk~~~~-g~~~~ll 346 (702) T PRK11783 329 QLGRRLKQQFG-GWNAALF 346 (702) T ss_pred HHHHHHHHhCC-CCeEEEE Confidence 3 3333448 8888664 No 236 >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... Probab=96.74 E-value=0.016 Score=54.02 Aligned_cols=105 Identities=13% Similarity=0.142 Sum_probs=67.2 Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343) ....+.+.+.+.+.+.++..|||||.|+|.++..|++.. ..++++++|.... ...++... ...++.++.++.. T Consensus 14 ~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~--~~L~~~~~---~~~~~~vi~~D~l 86 (262) T PF00398_consen 14 VDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLA--KHLKERFA---SNPNVEVINGDFL 86 (262) T ss_dssp EHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHH--HHHHHHCT---TCSSEEEEES-TT T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHH--HHHHHHhh---hcccceeeecchh Confidence 456778888888888899999999999999999999876 6678888887443 32232221 2346777776444 Q ss_pred CcCCCC-CCCceeEEEEccccccCCchHHHHHHHHHHh Q 019282 245 DFTKFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLAS 281 (343) Q Consensus 245 dl~~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r 281 (343) .+.... .......|+++.-+ ++... ++.++.. T Consensus 87 ~~~~~~~~~~~~~~vv~NlPy-~is~~----il~~ll~ 119 (262) T PF00398_consen 87 KWDLYDLLKNQPLLVVGNLPY-NISSP----ILRKLLE 119 (262) T ss_dssp TSCGGGHCSSSEEEEEEEETG-TGHHH----HHHHHHH T ss_pred ccccHHhhcCCceEEEEEecc-cchHH----HHHHHhh Confidence 333111 11355677776544 44443 4555555 No 237 >PF13679 Methyltransf_32: Methyltransferase domain Probab=96.62 E-value=0.012 Score=49.59 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=49.5 Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCC--CceEEEEcChhHHHHHHHHhccc-CC-CCCCCcEEEecccCCcCCCCCCCc Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNP--ENFHCLERDELSLMAAFRYELPS-QG-LLHKRPIIVRGEDMDFTKFGSGVV 254 (343) Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~--~~~~vvdid~s~~~~a~a~~~~~-~~-~~~~~~~~~~~~~~dl~~~~~~~~ 254 (343) ..+..+|+|+|||.|.++..++..+++ .+..++++|..+.....+.++.+ .+ ....+..+..+ +..+...... T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 99 (141) T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG---DIADESSSDP 99 (141) T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc---chhhhcccCC Confidence 356789999999999999999984421 23444444444333333333222 11 01112223222 2222212456 Q ss_pred eeEEEEccccccCCchHHHHHHHHHHh Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLAS 281 (343) Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r 281 (343) .++++.-++-..+.+. .++...+ T Consensus 100 ~~~~vgLHaCG~Ls~~----~l~~~~~ 122 (141) T PF13679_consen 100 PDILVGLHACGDLSDR----ALRLFIR 122 (141) T ss_pred CeEEEEeecccchHHH----HHHHHHH Confidence 7777776555444433 4455444 No 238 >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] Probab=96.42 E-value=0.058 Score=48.80 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=88.3 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343) +.+.++.||||-.+++..++.+..+...++..++.+.+...+..+ ..+.++.. ++....++. +..+..++.+|.|+ T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~-v~~~~l~~-~i~vr~~dg--l~~l~~~d~~d~iv 90 (226) T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRN-VKKNNLSE-RIDVRLGDG--LAVLELEDEIDVIV 90 (226) T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHH-HHhcCCcc-eEEEeccCC--ccccCccCCcCEEE Confidence 456679999999999999999987777888889999998888543 23333322 444443322 44444566899998 Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343) Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343) ..+| +..-....|++-.+.|+. =-++++.- ...+..++++|.+.+|+.+..+ T Consensus 91 IAGM----GG~lI~~ILee~~~~l~~-~~rlILQP------n~~~~~LR~~L~~~~~~I~~E~ 142 (226) T COG2384 91 IAGM----GGTLIREILEEGKEKLKG-VERLILQP------NIHTYELREWLSANSYEIKAET 142 (226) T ss_pred EeCC----cHHHHHHHHHHhhhhhcC-cceEEECC------CCCHHHHHHHHHhCCceeeeee Confidence 7654 444455678888888874 23444431 2237889999999999977654 No 239 >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity Probab=96.41 E-value=0.0059 Score=61.24 Aligned_cols=121 Identities=19% Similarity=0.204 Sum_probs=77.8 Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEcc Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASA 262 (343) Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~ 262 (343) .+|+|...|.|+++..|.+ ..+.|..+-+...... ...+..+|+.. ....-.+.|..| +.+||+|.+.. T Consensus 367 RNVMDMnAg~GGFAAAL~~----~~VWVMNVVP~~~~nt-L~vIydRGLIG----~yhDWCE~fsTY--PRTYDLlHA~~ 435 (506) T PF03141_consen 367 RNVMDMNAGYGGFAAALID----DPVWVMNVVPVSGPNT-LPVIYDRGLIG----VYHDWCEAFSTY--PRTYDLLHADG 435 (506) T ss_pred eeeeeecccccHHHHHhcc----CCceEEEecccCCCCc-chhhhhcccch----hccchhhccCCC--Ccchhheehhh Confidence 4699999999999988876 4566766555311000 00111123321 111122445545 47999999999 Q ss_pred ccccCCc-hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE Q 019282 263 VFLHMPD-KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343) Q Consensus 263 v~~hl~~-~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343) +|.+..+ -....+|-++-|+|+| ||.++|.+..+. .++++..+....++..- T Consensus 436 lfs~~~~rC~~~~illEmDRILRP-~G~~iiRD~~~v-----l~~v~~i~~~lrW~~~~ 488 (506) T PF03141_consen 436 LFSLYKDRCEMEDILLEMDRILRP-GGWVIIRDTVDV-----LEKVKKIAKSLRWEVRI 488 (506) T ss_pred hhhhhcccccHHHHHHHhHhhcCC-CceEEEeccHHH-----HHHHHHHHHhCcceEEE Confidence 9977644 3455689999999999 999999864332 45677777777776543 No 240 >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D. Probab=96.37 E-value=0.00071 Score=53.84 Aligned_cols=99 Identities=23% Similarity=0.271 Sum_probs=36.4 Q ss_pred EEEcCCcCHHHHHHHHHcCCCc---eEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC-CCCCCCceeEEEE Q 019282 186 LEIGCGTLRVGVHFIRYLNPEN---FHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT-KFGSGVVYDLIYA 260 (343) Q Consensus 186 LDIGCGtG~~a~~la~~~~~~~---~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~-~~~~~~~fDlIvs 260 (343) ||||+..|..+..+++.+...+ ++++|..+. ....++..+ .+.. .++.++.++..+.. .+ ..++||+|+. T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~---~~~~~~~~~~~~~~-~~~~~~~g~s~~~l~~~-~~~~~dli~i 75 (106) T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG---DEQAQEIIKKAGLS-DRVEFIQGDSPDFLPSL-PDGPIDLIFI 75 (106) T ss_dssp --------------------------EEEESS---------------GGG--BTEEEEES-THHHHHHH-HH--EEEEEE T ss_pred CccccccccccccccccccccccCCEEEEECCCc---ccccchhhhhcCCC-CeEEEEEcCcHHHHHHc-CCCCEEEEEE Confidence 7999999999999998775543 555655552 111111111 2232 35777776443321 12 2478999987 Q ss_pred ccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 261 SAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 261 ~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) -.. |-. +.....++.+.+.|+| ||.+++- T Consensus 76 Dg~--H~~-~~~~~dl~~~~~~l~~-ggviv~d 104 (106) T PF13578_consen 76 DGD--HSY-EAVLRDLENALPRLAP-GGVIVFD 104 (106) T ss_dssp ES-----H-HHHHHHHHHHGGGEEE-EEEEEEE T ss_pred CCC--CCH-HHHHHHHHHHHHHcCC-CeEEEEe Confidence 541 221 2333478999999999 9988764 No 241 >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. Probab=96.29 E-value=0.022 Score=56.04 Aligned_cols=101 Identities=5% Similarity=0.076 Sum_probs=64.4 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343) +.+|||+-||+|..++.++...+ ...++..|+++...... +++.+.+... .+.++.+++..+... ..+.||+|.. T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i--~~N~~~N~~~-~~~v~~~Da~~~l~~-~~~~fDvIdl 120 (374) T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESI--KNNVEYNSVE-NIEVPNEDAANVLRY-RNRKFHVIDI 120 (374) T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHH--HHHHHHhCCC-cEEEEchhHHHHHHH-hCCCCCEEEe Confidence 36899999999999999988642 34566666666555444 3333321111 344554433333211 1357999988 Q ss_pred ccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 261 SAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 261 ~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .- + ..+.+ ++..+.+.+++ ||.++++ T Consensus 121 DP-f-Gs~~~----fld~al~~~~~-~glL~vT 146 (374) T TIGR00308 121 DP-F-GTPAP----FVDSAIQASAE-RGLLLVT 146 (374) T ss_pred CC-C-CCcHH----HHHHHHHhccc-CCEEEEE Confidence 65 4 22222 88999999999 9999987 No 242 >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] Probab=96.27 E-value=0.012 Score=49.85 Aligned_cols=91 Identities=12% Similarity=0.195 Sum_probs=53.9 Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343) Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343) .+...|-...+--.|+.++|+|||.|.+...+. .+.+..+.++|||+..+... +++.+. . .-.+.+.+++-.++. T Consensus 35 sM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf--~rNaeE-f-EvqidlLqcdildle 109 (185) T KOG3420|consen 35 SMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIF--TRNAEE-F-EVQIDLLQCDILDLE 109 (185) T ss_pred HHHHHHHhhhccccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHH--hhchHH-h-hhhhheeeeeccchh Confidence 344445444554568899999999999985443 34555566777777666655 333221 1 112334444222322 Q ss_pred CCCCCCceeEEEEccccc Q 019282 248 KFGSGVVYDLIYASAVFL 265 (343) Q Consensus 248 ~~~~~~~fDlIvs~~v~~ 265 (343) + ..+.||.++.+.-|. T Consensus 110 -~-~~g~fDtaviNppFG 125 (185) T KOG3420|consen 110 -L-KGGIFDTAVINPPFG 125 (185) T ss_pred -c-cCCeEeeEEecCCCC Confidence 1 357899999887663 No 243 >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] Probab=96.24 E-value=0.029 Score=53.26 Aligned_cols=70 Identities=16% Similarity=0.157 Sum_probs=48.3 Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE-----ecccc-------ccCCCHHHHHHHHHhcCCcEEE Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS-----HNIKF-------CSRLGGEECTKRLTSLGLEYIG 320 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~-----~~~~~-------~~~~~~~~l~~~L~~aGf~~v~ 320 (343) +.||+|+..+.+. .......+++.+..+||| ||+.+=. |..+- ...++.+++.......||+++. T Consensus 258 ~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~-GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369) T KOG2798|consen 258 GSYDVVVTCFFID--TAHNILEYIDTIYKILKP-GGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369) T ss_pred CccceEEEEEEee--chHHHHHHHHHHHHhccC-CcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE Confidence 4699999875442 223445699999999999 9987532 21111 1223488999999999999998 Q ss_pred eeecc Q 019282 321 KKTHD 325 (343) Q Consensus 321 ~~~~~ 325 (343) .+..+ T Consensus 335 e~~Id 339 (369) T KOG2798|consen 335 ERGID 339 (369) T ss_pred eeeee Confidence 77543 No 244 >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] Probab=96.17 E-value=0.0079 Score=60.38 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=72.9 Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343) ..+.++..+.+..+++.+..+||+-||||.+++.+++.. ..+.++.++++.... |+.++..+.. .+..|+.+.++ T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~d--A~~nA~~Ngi-sNa~Fi~gqaE 441 (534) T KOG2187|consen 367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVED--AEKNAQINGI-SNATFIVGQAE 441 (534) T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcch--hhhcchhcCc-cceeeeecchh Confidence 567788889999999999999999999999999998843 344455555554444 4544443322 36778888666 Q ss_pred CcCCCCCC---CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 245 DFTKFGSG---VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 245 dl~~~~~~---~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ++-.-..+ +.-++|....--. .+-... +++.+.+.-+| -=.++++ T Consensus 442 ~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~--~ik~l~~~~~~-~rlvyvS 489 (534) T KOG2187|consen 442 DLFPSLLTPCCDSETLVAIIDPPR-KGLHMK--VIKALRAYKNP-RRLVYVS 489 (534) T ss_pred hccchhcccCCCCCceEEEECCCc-ccccHH--HHHHHHhccCc-cceEEEE Confidence 65322111 1334333322111 111222 67777777667 5556665 No 245 >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. Probab=96.11 E-value=0.0052 Score=53.29 Aligned_cols=73 Identities=18% Similarity=0.306 Sum_probs=41.9 Q ss_pred eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCC-CCCCCceeEEEEc Q 019282 184 HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTK-FGSGVVYDLIYAS 261 (343) Q Consensus 184 rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~-~~~~~~fDlIvs~ 261 (343) .|+|+.||.|+.+++|++.+ ..++++|+|+ ...+.++.+.+ .|. ..++.++.++..++.. ......||+|+++ T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~--~~~~~a~hNa~vYGv-~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163) T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDP--ERLECAKHNAEVYGV-ADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163) T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-H--HHHHHHHHHHHHTT--GGGEEEEES-HHHHGGGB------SEEEE- T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCH--HHHHHHHHHHHHcCC-CCcEEEEeCCHHHHHhhccccccccEEEEC Confidence 69999999999999999964 3455555555 44444454444 333 3478888885555432 1112228999975 No 246 >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] Probab=96.10 E-value=0.00079 Score=57.42 Aligned_cols=42 Identities=26% Similarity=0.331 Sum_probs=39.2 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .+++.|+|++.++++|+.-.+....++++++.||| ||.|-|+ T Consensus 44 ~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp-~G~LriA 85 (185) T COG4627 44 EDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRP-GGKLRIA 85 (185) T ss_pred CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc-CcEEEEE Confidence 47899999999999999988888899999999999 9999887 No 247 >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] Probab=96.04 E-value=0.1 Score=46.16 Aligned_cols=120 Identities=21% Similarity=0.313 Sum_probs=69.3 Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343) Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343) +.++..+... --.+.++||+=+|+|.+++..+... ....+.++.|....... +++.+ .+... +..++..++.. T Consensus 31 EalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l--~~N~~~l~~~~-~~~~~~~da~~ 104 (187) T COG0742 31 EALFNILAPD--EIEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKIL--KENLKALGLEG-EARVLRNDALR 104 (187) T ss_pred HHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHH--HHHHHHhCCcc-ceEEEeecHHH Confidence 4455555321 2468899999999999998877632 23455666665444433 33222 33222 44555544443 Q ss_pred cCC-CCCCCceeEEEEcccccc-CCchHHHHHHHH--HHhccCCCCcEEEEEec Q 019282 246 FTK-FGSGVVYDLIYASAVFLH-MPDKLVWVGLER--LASKLRPYDGRIFVSHN 295 (343) Q Consensus 246 l~~-~~~~~~fDlIvs~~v~~h-l~~~~~~~~L~~--l~r~LkP~GG~lvi~~~ 295 (343) +.. ....++||+|+.---++. +.+... .+.. -..+|+| +|.+++.+. T Consensus 105 ~L~~~~~~~~FDlVflDPPy~~~l~~~~~--~~~~~~~~~~L~~-~~~iv~E~~ 155 (187) T COG0742 105 ALKQLGTREPFDLVFLDPPYAKGLLDKEL--ALLLLEENGWLKP-GALIVVEHD 155 (187) T ss_pred HHHhcCCCCcccEEEeCCCCccchhhHHH--HHHHHHhcCCcCC-CcEEEEEeC Confidence 321 112235999999877751 122222 2333 4578999 999999864 No 248 >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... Probab=96.03 E-value=0.041 Score=52.05 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=91.1 Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEE Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPII 238 (343) Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~ 238 (343) .+.+..+..-.......+...++.+|||+.+|.|.=+.+++.... ...+.+.|++......-..+ ..+.|.. .+.. T Consensus 64 ~G~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~-~~r~g~~--~v~~ 140 (283) T PF01189_consen 64 NGLFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKEN-LKRLGVF--NVIV 140 (283) T ss_dssp TTSEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHH-HHHTT-S--SEEE T ss_pred CCcEEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHH-HHhcCCc--eEEE Confidence 344444444444444446788899999999999999999999776 44566777776555444222 1223432 3444 Q ss_pred EecccCCcCCCCCCCceeEEEEc------cccccCCchH--------------HHHHHHHHHhcc----CCCCcEEEEEe Q 019282 239 VRGEDMDFTKFGSGVVYDLIYAS------AVFLHMPDKL--------------VWVGLERLASKL----RPYDGRIFVSH 294 (343) Q Consensus 239 ~~~~~~dl~~~~~~~~fDlIvs~------~v~~hl~~~~--------------~~~~L~~l~r~L----kP~GG~lvi~~ 294 (343) ...+...+........||.|+.- .++..-++.. ....|+.+.+.+ || ||+++.+. T Consensus 141 ~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~-gG~lvYsT 219 (283) T PF01189_consen 141 INADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP-GGRLVYST 219 (283) T ss_dssp EESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE-EEEEEEEE T ss_pred EeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC-CCeEEEEe Confidence 43322222111123469999962 2333323221 236889999999 99 99998763 Q ss_pred ccccccCCCHHHHHHHHHhc-CCcEEEee Q 019282 295 NIKFCSRLGGEECTKRLTSL-GLEYIGKK 322 (343) Q Consensus 295 ~~~~~~~~~~~~l~~~L~~a-Gf~~v~~~ 322 (343) = .....-..+.+...|++. .|+.+... T Consensus 220 C-S~~~eENE~vV~~fl~~~~~~~l~~~~ 247 (283) T PF01189_consen 220 C-SLSPEENEEVVEKFLKRHPDFELVPIP 247 (283) T ss_dssp S-HHHGGGTHHHHHHHHHHSTSEEEECCE T ss_pred c-cHHHHHHHHHHHHHHHhCCCcEEEecc Confidence 0 011111256667777776 66665443 No 249 >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. Probab=95.87 E-value=0.037 Score=52.06 Aligned_cols=106 Identities=25% Similarity=0.242 Sum_probs=53.7 Q ss_pred CCeEEEEcCCcCHHHHHHH-HH-cCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEE Q 019282 182 NSHVLEIGCGTLRVGVHFI-RY-LNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la-~~-~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343) ..+|+=||||.==++..+. +. .....++++|+|+.....+ ++..+ ......+..++.++..+... .-..||+| T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a--~~lv~~~~~L~~~m~f~~~d~~~~~~--dl~~~DvV 196 (276) T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELA--RRLVASDLGLSKRMSFITADVLDVTY--DLKEYDVV 196 (276) T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHH--HHHHH---HH-SSEEEEES-GGGG-G--G----SEE T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHH--HHHHhhcccccCCeEEEecchhcccc--ccccCCEE Confidence 3599999999765555444 32 2344567778887766555 33332 11224467777765554431 23589999 Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +...... +.......+|+.+.+.++| |..+++- T Consensus 197 ~lAalVg-~~~e~K~~Il~~l~~~m~~-ga~l~~R 229 (276) T PF03059_consen 197 FLAALVG-MDAEPKEEILEHLAKHMAP-GARLVVR 229 (276) T ss_dssp EE-TT-S-----SHHHHHHHHHHHS-T-TSEEEEE T ss_pred EEhhhcc-cccchHHHHHHHHHhhCCC-CcEEEEe Confidence 8876553 2223344599999999999 8887775 No 250 >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] Probab=95.86 E-value=0.075 Score=49.17 Aligned_cols=108 Identities=26% Similarity=0.227 Sum_probs=61.0 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc---CCCCCCCcE---EEecccCCcCCCCCCCc Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS---QGLLHKRPI---IVRGEDMDFTKFGSGVV 254 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~---~~~~~~~~~---~~~~~~~dl~~~~~~~~ 254 (343) ...+|||+|.|+|..++..+... ...+..+|...........+.... .+... .+. +.-++..+.... .... T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~-~v~v~~L~Wg~~~~~~~~-~~~~ 162 (248) T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVVENLKFNRDKNNIALNQLGG-SVIVAILVWGNALDVSFR-LPNP 162 (248) T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchhhHHHHHHhhhhhhhhhhhcCC-ceeEEEEecCCcccHhhc-cCCc Confidence 45679999999997777666533 345555555443333332211111 11110 111 111122222212 1222 Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) +|+|+++.++.+-..... ++..++..|.. +|.+++.. T Consensus 163 ~DlilasDvvy~~~~~e~--Lv~tla~ll~~-~~~i~l~~ 199 (248) T KOG2793|consen 163 FDLILASDVVYEEESFEG--LVKTLAFLLAK-DGTIFLAY 199 (248) T ss_pred ccEEEEeeeeecCCcchh--HHHHHHHHHhc-CCeEEEEE Confidence 999999999977766655 78888999998 88766664 No 251 >PRK10742 putative methyltransferase; Provisional Probab=95.86 E-value=0.024 Score=52.36 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=63.5 Q ss_pred HHHHHhcCCCCCC--eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC-------CC-CCCCcEEEe Q 019282 171 EFLAEASHITPNS--HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ-------GL-LHKRPIIVR 240 (343) Q Consensus 171 ~~l~~~~~l~~~~--rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~-------~~-~~~~~~~~~ 240 (343) +.|.+..+++++. +|||.=+|+|..+..++. .++.++.++.++...+..+..... +. ...++.++. T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las----~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250) T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLAS----VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250) T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHH----cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe Confidence 5677778888887 899999999999999987 455577777777766554432221 11 113456666 Q ss_pred cccCCcCCCCCCCceeEEEEccccccCC Q 019282 241 GEDMDFTKFGSGVVYDLIYASAVFLHMP 268 (343) Q Consensus 241 ~~~~dl~~~~~~~~fDlIvs~~v~~hl~ 268 (343) ++..++..- ....||+|+.--+|.|-. T Consensus 152 ~da~~~L~~-~~~~fDVVYlDPMfp~~~ 178 (250) T PRK10742 152 ASSLTALTD-ITPRPQVVYLDPMFPHKQ 178 (250) T ss_pred CcHHHHHhh-CCCCCcEEEECCCCCCCc Confidence 655555432 234799999999998744 No 252 >COG2520 Predicted methyltransferase [General function prediction only] Probab=95.74 E-value=0.12 Score=50.02 Aligned_cols=128 Identities=12% Similarity=0.014 Sum_probs=79.5 Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343) Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343) ...+|.+|||.=+|-|.+++.++.+-... ++.+|+++.. ..+.+++...+-....+..+.+++.++... -+.+|. T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A--~~~L~eNi~LN~v~~~v~~i~gD~rev~~~--~~~aDr 259 (341) T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDA--VEYLKENIRLNKVEGRVEPILGDAREVAPE--LGVADR 259 (341) T ss_pred hhcCCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHH--HHHHHHHHHhcCccceeeEEeccHHHhhhc--cccCCE Confidence 34568999999999999999999854332 5555555544 444454444333333466676655544421 168999 Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccccc--CCCHHHHHHHHHhcCCc Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCS--RLGGEECTKRLTSLGLE 317 (343) Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~--~~~~~~l~~~L~~aGf~ 317 (343) |++...- . ...++....+.+++ ||.+-.....+... ......+.....+.|++ T Consensus 260 Iim~~p~----~--a~~fl~~A~~~~k~-~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~ 314 (341) T COG2520 260 IIMGLPK----S--AHEFLPLALELLKD-GGIIHYYEFVPEDDIEERPEKRIKSAARKGGYK 314 (341) T ss_pred EEeCCCC----c--chhhHHHHHHHhhc-CcEEEEEeccchhhcccchHHHHHHHHhhccCc Confidence 9987433 2 12378889999999 99886543211111 11356666666677654 No 253 >KOG3115 consensus Methyltransferase-like protein [General function prediction only] Probab=95.44 E-value=0.092 Score=47.02 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=58.2 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhc-------ccCCCCCCCcEEEecccCCcCCCCCCC Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYEL-------PSQGLLHKRPIIVRGEDMDFTKFGSGV 253 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~-------~~~~~~~~~~~~~~~~~~dl~~~~~~~ 253 (343) +...+.|||||-|.+...++..+|..- ++|+++......+.+++ .+.+. ..++.....+++-+. .+ T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtL--iLGmEIR~KVsdYVk~RI~ALR~~~a~~~-~~ni~vlr~namk~l----pn 132 (249) T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTL--ILGMEIRDKVSDYVKERIQALRRTSAEGQ-YPNISVLRTNAMKFL----PN 132 (249) T ss_pred ccceEEeeccCccchhhhccccCccce--eeeehhhHHHHHHHHHHHHHHhccccccc-cccceeeeccchhhc----cc Confidence 556799999999999999998887654 45555443332222211 11222 233444443333332 11 Q ss_pred ceeEEEEccccccCCchH-----------HHHHHHHHHhccCCCCcEEEEE Q 019282 254 VYDLIYASAVFLHMPDKL-----------VWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 254 ~fDlIvs~~v~~hl~~~~-----------~~~~L~~l~r~LkP~GG~lvi~ 293 (343) -|.--..+-+|+.++++. ..+++.+..=+|++ ||.++.. T Consensus 133 ~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~-gg~~yti 182 (249) T KOG3115|consen 133 FFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE-GGILYTI 182 (249) T ss_pred hhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhc-CceEEEE Confidence 222222233333334432 12578888889999 9999876 No 254 >COG4076 Predicted RNA methylase [General function prediction only] Probab=95.32 E-value=0.032 Score=49.31 Aligned_cols=100 Identities=14% Similarity=0.040 Sum_probs=63.7 Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEcc Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASA 262 (343) Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~ 262 (343) ..+-|+|.|+|.++...+.+. .. ++.++..+...+++.++...... .+...+.+++.+ +.. +..|+|+|-. T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A--~r--ViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~---y~f-e~ADvvicEm 104 (252) T COG4076 34 DTFADLGAGSGILSVVAAHAA--ER--VIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARD---YDF-ENADVVICEM 104 (252) T ss_pred hceeeccCCcchHHHHHHhhh--ce--EEEEecCcHHHHHhhhcCCCCCC-cceEEEeccccc---ccc-cccceeHHHH Confidence 579999999999998777752 33 55555555666666665432222 245566664433 333 4679998854 Q ss_pred ccccCCchHHHHHHHHHHhccCCCCcEEEE Q 019282 263 VFLHMPDKLVWVGLERLASKLRPYDGRIFV 292 (343) Q Consensus 263 v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi 292 (343) .=..+-++....++..+.+-|+- +|.++- T Consensus 105 lDTaLi~E~qVpV~n~vleFLr~-d~tiiP 133 (252) T COG4076 105 LDTALIEEKQVPVINAVLEFLRY-DPTIIP 133 (252) T ss_pred hhHHhhcccccHHHHHHHHHhhc-CCcccc Confidence 44444444444578888889998 888864 No 255 >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] Probab=95.27 E-value=0.22 Score=48.74 Aligned_cols=127 Identities=9% Similarity=0.010 Sum_probs=82.1 Q ss_pred cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC--------------------------------C----- Q 019282 164 AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP--------------------------------E----- 206 (343) Q Consensus 164 ~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~--------------------------------~----- 206 (343) +....+...|....+-+++..++|==||+|.+++..+-...+ . T Consensus 174 pLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381) T COG0116 174 PLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381) T ss_pred CchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc Confidence 345666777777777788889999999999999987764321 1 Q ss_pred --ceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEccccc-cCCchH-----HHHHHHH Q 019282 207 --NFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFL-HMPDKL-----VWVGLER 278 (343) Q Consensus 207 --~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~-hl~~~~-----~~~~L~~ 278 (343) .+++.|+|...+..|..+. .+.|.. ..+.+.+++..++.... +.+|+|+|+--+. -+++.. -..+.+. T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA-~~AGv~-d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~ 329 (381) T COG0116 254 LPIIYGSDIDPRHIEGAKANA-RAAGVG-DLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEALVAKLYREFGRT 329 (381) T ss_pred cceEEEecCCHHHHHHHHHHH-HhcCCC-ceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChhhHHHHHHHHHHH Confidence 2568888887766665443 224543 37778877555555331 7899999985542 223321 1234556 Q ss_pred HHhccCCCCcEEEEEec Q 019282 279 LASKLRPYDGRIFVSHN 295 (343) Q Consensus 279 l~r~LkP~GG~lvi~~~ 295 (343) +++.++- -++.+++.+ T Consensus 330 lk~~~~~-ws~~v~tt~ 345 (381) T COG0116 330 LKRLLAG-WSRYVFTTS 345 (381) T ss_pred HHHHhcC-CceEEEEcc Confidence 6677776 667777654 No 256 >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] Probab=94.68 E-value=0.42 Score=42.41 Aligned_cols=138 Identities=17% Similarity=0.120 Sum_probs=71.0 Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC--------- Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK--------- 248 (343) Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~--------- 248 (343) -++|+.+|||+||.+|.++.-..+...+.+ .+.|+|.-... +.....++.+ .|+.+ T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g-~v~gVDllh~~------------p~~Ga~~i~~--~dvtdp~~~~ki~e 130 (232) T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNG-MVLGVDLLHIE------------PPEGATIIQG--NDVTDPETYRKIFE 130 (232) T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCc-eEEEEeeeecc------------CCCCcccccc--cccCCHHHHHHHHH Confidence 357899999999999999998888774333 35566652210 1111222222 12211 Q ss_pred CCCCCceeEEEEccccccCCchH----H-----HHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE Q 019282 249 FGSGVVYDLIYASAVFLHMPDKL----V-----WVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343) Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~----~-----~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343) ..++-+.|+|++-..--..+... . .++|.-....++| +|.+++-...... ...+...| ++-|+.+ T Consensus 131 ~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p-~g~fvcK~w~g~e----~~~l~r~l-~~~f~~V 204 (232) T KOG4589|consen 131 ALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIP-NGSFVCKLWDGSE----EALLQRRL-QAVFTNV 204 (232) T ss_pred hCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCC-CcEEEEEEecCCc----hHHHHHHH-HHHhhhc Confidence 11456789998854432222211 1 1233334567789 9999886321110 23344444 3445555 Q ss_pred EeeeccccccchhHHhh Q 019282 320 GKKTHDSLLFNHYEIWF 336 (343) Q Consensus 320 ~~~~~~~l~~~~~e~w~ 336 (343) .....+.-...--|.+| T Consensus 205 k~vKP~Asr~eS~E~y~ 221 (232) T KOG4589|consen 205 KKVKPDASRDESAETYL 221 (232) T ss_pred EeeCCccccccccceee Confidence 54443333333344333 No 257 >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed Probab=94.60 E-value=0.18 Score=53.25 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=44.3 Q ss_pred CceeEEEEcc-ccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee Q 019282 253 VVYDLIYASA-VFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343) Q Consensus 253 ~~fDlIvs~~-v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343) ..+|+|+.-. ....-|+-....+|..++++++| ||++.--. ....++..|.++||++.... T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~-~~~~~t~t--------~a~~vr~~l~~~GF~v~~~~ 226 (662) T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARP-GATLATFT--------SAGFVRRGLQEAGFTVRKVK 226 (662) T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCC-CCEEEEee--------hHHHHHHHHHHcCCeeeecC Confidence 4699998753 33344554556799999999999 98885321 25678899999999876543 No 258 >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] Probab=94.59 E-value=0.17 Score=50.76 Aligned_cols=106 Identities=18% Similarity=0.321 Sum_probs=64.7 Q ss_pred CCCCC-eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE Q 019282 179 ITPNS-HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343) Q Consensus 179 l~~~~-rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343) +.+.. ++|.+|||.-.+..++-+..- ..++-+|++. ...+........ ......+... +++-..+ ++++||. T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G~-~dI~~iD~S~--V~V~~m~~~~~~--~~~~~~~~~~-d~~~l~f-edESFdi 117 (482) T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNGF-EDITNIDSSS--VVVAAMQVRNAK--ERPEMQMVEM-DMDQLVF-EDESFDI 117 (482) T ss_pred hchhhceeEeecCCCCHHHHHHHhcCC-CCceeccccH--HHHHHHHhcccc--CCcceEEEEe-cchhccC-CCcceeE Confidence 34445 999999999998888876322 3445555554 444433322211 1112233322 2222323 4789999 Q ss_pred EEEccccccCCchH--------HHHHHHHHHhccCCCCcEEEE Q 019282 258 IYASAVFLHMPDKL--------VWVGLERLASKLRPYDGRIFV 292 (343) Q Consensus 258 Ivs~~v~~hl~~~~--------~~~~L~~l~r~LkP~GG~lvi 292 (343) |+.-+.++++-.+. ....+.++.++|+| ||+.+. T Consensus 118 VIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~-~gk~~s 159 (482) T KOG2352|consen 118 VIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAP-GGKYIS 159 (482) T ss_pred EEecCccccccCCchhhhhhHHhhHHHhhHHHHhcc-CCEEEE Confidence 99999998873321 23468899999999 999754 No 259 >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. Probab=94.47 E-value=0.24 Score=47.20 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=39.8 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCC-CCCCCcEEEecc-cCC-cCCCC-CCCceeE Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQG-LLHKRPIIVRGE-DMD-FTKFG-SGVVYDL 257 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~-~~~~~~~~~~~~-~~d-l~~~~-~~~~fDl 257 (343) ..++||||||....=-.|......-.+.++|||+..+..|.. +.+.+ ....++.++... ... +.... ..+.||+ T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~--nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299) T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARE--NVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299) T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHH--HHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHH--HHHhccccccceEEEEcCCccccchhhhcccceeeE Confidence 568999999987653333333334567788888877766643 33333 334466554332 112 22121 3468999 Q ss_pred EEEccccccCCch Q 019282 258 IYASAVFLHMPDK 270 (343) Q Consensus 258 Ivs~~v~~hl~~~ 270 (343) .+|+--|+.-.++ T Consensus 181 tmCNPPFy~s~~e 193 (299) T PF05971_consen 181 TMCNPPFYSSQEE 193 (299) T ss_dssp EEE-----SS--- T ss_pred EecCCccccChhh Confidence 9999888665554 No 260 >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A. Probab=94.24 E-value=0.17 Score=46.86 Aligned_cols=144 Identities=14% Similarity=0.084 Sum_probs=73.7 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343) -+.+++.+.. .+++..+|+|||||.==++..+....+...+++.|||......- +.... .+. ...... . T Consensus 92 Ld~fY~~if~--~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l--~~~l~~l~~---~~~~~v---~ 161 (251) T PF07091_consen 92 LDEFYDEIFG--RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFL--NAFLAVLGV---PHDARV---R 161 (251) T ss_dssp HHHHHHHHCC--CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHH--HHHHHHTT----CEEEEE---E T ss_pred HHHHHHHHHh--cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHH--HHHHHhhCC---CcceeE---e Confidence 4556666653 45667899999999988877777655556777777776544333 32221 222 222221 2 Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCC--C-----HHHHHHHHHhcCCc Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRL--G-----GEECTKRLTSLGLE 317 (343) Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~--~-----~~~l~~~L~~aGf~ 317 (343) |+....+....|+....=+++-+..... ..--++.+.++ .-.++++++....... + ...+..++...|+. T Consensus 162 Dl~~~~~~~~~DlaLllK~lp~le~q~~-g~g~~ll~~~~--~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~ 238 (251) T PF07091_consen 162 DLLSDPPKEPADLALLLKTLPCLERQRR-GAGLELLDALR--SPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWI 238 (251) T ss_dssp -TTTSHTTSEESEEEEET-HHHHHHHST-THHHHHHHHSC--ESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEE T ss_pred eeeccCCCCCcchhhHHHHHHHHHHHhc-chHHHHHHHhC--CCeEEEeccccccccCccccccCHHHHHHHhcccCCce Confidence 4433335678999999877755533322 12233444444 2567788755443322 2 44455555556666 Q ss_pred EEEee Q 019282 318 YIGKK 322 (343) Q Consensus 318 ~v~~~ 322 (343) +.+.. T Consensus 239 ~~~~~ 243 (251) T PF07091_consen 239 VDRLT 243 (251) T ss_dssp EEEEE T ss_pred eeeee Confidence 44433 No 261 >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A. Probab=94.20 E-value=1.6 Score=40.31 Aligned_cols=147 Identities=19% Similarity=0.174 Sum_probs=66.2 Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF 249 (343) Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~ 249 (343) .++.+...+ .|++||=+|=+-- .++.++-...+..++|+|+|...+..- ++.++ .|+ .+.... .|+.+. T Consensus 35 ~~~~~~gdL-~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI--~~~a~~~gl---~i~~~~---~DlR~~ 104 (243) T PF01861_consen 35 ALMAERGDL-EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFI--NRVAEEEGL---PIEAVH---YDLRDP 104 (243) T ss_dssp HHHHHTT-S-TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHH--HHHHHHHT-----EEEE------TTS- T ss_pred HHHHhcCcc-cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHH--HHHHHHcCC---ceEEEE---eccccc Confidence 334443333 5789999996553 333344334557899999998654332 32222 333 232222 344322 Q ss_pred -C--CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCc-EEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeecc Q 019282 250 -G--SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDG-RIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTHD 325 (343) Q Consensus 250 -~--~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG-~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~~ 325 (343) + ..++||+++..-... . ....-++.+....||. .| ..++...........--++.+.+.+.||.+..... T Consensus 105 LP~~~~~~fD~f~TDPPyT-~--~G~~LFlsRgi~~Lk~-~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~-- 178 (243) T PF01861_consen 105 LPEELRGKFDVFFTDPPYT-P--EGLKLFLSRGIEALKG-EGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIP-- 178 (243) T ss_dssp --TTTSS-BSEEEE---SS-H--HHHHHHHHHHHHTB-S-TT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEE-- T ss_pred CCHHHhcCCCEEEeCCCCC-H--HHHHHHHHHHHHHhCC-CCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHh-- Confidence 1 358999999864331 1 2333489999999997 55 55655421111000023567778899997654332 Q ss_pred ccccchhHHh Q 019282 326 SLLFNHYEIW 335 (343) Q Consensus 326 ~l~~~~~e~w 335 (343) .|++|+.| T Consensus 179 --~Fn~Y~ga 186 (243) T PF01861_consen 179 --DFNRYEGA 186 (243) T ss_dssp --EEEEB--- T ss_pred --hhcccccc Confidence 24555544 No 262 >TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. Probab=94.18 E-value=0.1 Score=43.28 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=29.2 Q ss_pred eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhc Q 019282 184 HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYEL 226 (343) Q Consensus 184 rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~ 226 (343) .|||||||+|..+..+++..+.. +++.+++.+.+....++. T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~--~v~~~E~~~~~~~~l~~~ 41 (143) T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEG--RVIAFEPLPDAYEILEEN 41 (143) T ss_pred CEEEccCCccHHHHHHHHhCCCC--EEEEEecCHHHHHHHHHH Confidence 38999999999999999876544 455556655655544443 No 263 >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] Probab=94.12 E-value=0.93 Score=46.27 Aligned_cols=143 Identities=19% Similarity=0.249 Sum_probs=81.9 Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC----CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecc Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP----ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGE 242 (343) Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~----~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~ 242 (343) +.+.+.+.+.+...+..+|.|-.||+|.+.....+++.. ..+++.+++......+..+... .+... ......++ T Consensus 172 ~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l-hgi~~-~~~i~~~d 249 (489) T COG0286 172 REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL-HGIEG-DANIRHGD 249 (489) T ss_pred HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH-hCCCc-cccccccc Confidence 567777777777677789999999999999988887743 3356666656555555443221 22221 11111111 Q ss_pred cCCcCCC---CCCCceeEEEEccccc---cCC-------------------c-hHHHHHHHHHHhccCCCCcEEEEE--e Q 019282 243 DMDFTKF---GSGVVYDLIYASAVFL---HMP-------------------D-KLVWVGLERLASKLRPYDGRIFVS--H 294 (343) Q Consensus 243 ~~dl~~~---~~~~~fDlIvs~~v~~---hl~-------------------~-~~~~~~L~~l~r~LkP~GG~lvi~--~ 294 (343) ...-+.. ...+.||.|+++--+- +.. . .....+++.+...|+| ||+..|. + T Consensus 250 tl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~-~g~aaivl~~ 328 (489) T COG0286 250 TLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKP-GGRAAIVLPD 328 (489) T ss_pred cccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCC-CceEEEEecC Confidence 1111111 1236799999874442 110 1 1114689999999999 9876544 3 Q ss_pred ccccccCCCHHHHHHHHHh Q 019282 295 NIKFCSRLGGEECTKRLTS 313 (343) Q Consensus 295 ~~~~~~~~~~~~l~~~L~~ 313 (343) +.-+... ....+++.+-+ T Consensus 329 gvlfr~~-~e~~IR~~l~~ 346 (489) T COG0286 329 GVLFRGG-AEKDIRKDLLE 346 (489) T ss_pred CcCcCCC-chHHHHHHHHh Confidence 2222222 35666666655 No 264 >PLN02668 indole-3-acetate carboxyl methyltransferase Probab=93.96 E-value=0.46 Score=46.85 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=31.8 Q ss_pred CCCceeEEEEccccccCCch------------------------------------HHHHHHHHHHhccCCCCcEEEEE Q 019282 251 SGVVYDLIYASAVFLHMPDK------------------------------------LVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~------------------------------------~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +.++.|++++...+||+..- ++..+|+.=.+-|.| ||+++++ T Consensus 159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvp-GG~mvl~ 236 (386) T PLN02668 159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKR-GGAMFLV 236 (386) T ss_pred CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcEEEEE Confidence 67899999999999998630 122345555678999 9999987 No 265 >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A. Probab=93.92 E-value=0.2 Score=42.29 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=59.7 Q ss_pred eEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEccccccCCc-------hHHHHHHHHH Q 019282 208 FHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPD-------KLVWVGLERL 279 (343) Q Consensus 208 ~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~-------~~~~~~L~~l 279 (343) +++.||-...... .+++.. .+.. .++.++......+..+...++.|+++.+..+.=-+| ......++.+ T Consensus 2 VyaFDIQ~~Ai~~--T~~rL~~~~~~-~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140) T PF06962_consen 2 VYAFDIQEEAIEN--TRERLEEAGLE-DRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140) T ss_dssp EEEEES-HHHHHH--HHHHHHHTT-G-SGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH T ss_pred EEEEECHHHHHHH--HHHHHHhcCCC-CcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH Confidence 3455555444333 343333 4433 377788776667776644458999999865521111 1234578899 Q ss_pred HhccCCCCcEEEEEeccccccCCC----HHHHHHH---HHhcCCcEEEeeecc Q 019282 280 ASKLRPYDGRIFVSHNIKFCSRLG----GEECTKR---LTSLGLEYIGKKTHD 325 (343) Q Consensus 280 ~r~LkP~GG~lvi~~~~~~~~~~~----~~~l~~~---L~~aGf~~v~~~~~~ 325 (343) .++|+| ||.+.+.. +..+-+ .+.+.++ |....|.+...+..+ T Consensus 79 l~lL~~-gG~i~iv~---Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N 127 (140) T PF06962_consen 79 LELLKP-GGIITIVV---YPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFIN 127 (140) T ss_dssp HHHEEE-EEEEEEEE-----STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS T ss_pred HHhhcc-CCEEEEEE---eCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccC Confidence 999999 99998873 222222 2333344 445678877766543 No 266 >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. Probab=93.90 E-value=0.077 Score=48.68 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=67.7 Q ss_pred HHHHHhcCCCCCC--eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHh---cccCCCC-----CCCcEEEe Q 019282 171 EFLAEASHITPNS--HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYE---LPSQGLL-----HKRPIIVR 240 (343) Q Consensus 171 ~~l~~~~~l~~~~--rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~---~~~~~~~-----~~~~~~~~ 240 (343) +.+.+..+++++. +|||.-+|-|+-+..++. + +..|++++.++...+..+. ....... ..++.++. T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~-~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234) T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLAS-L---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234) T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHH-H---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHc-c---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc Confidence 4566667888774 899999999999998885 3 4468888887776554321 1111111 12567777 Q ss_pred cccCCcCCCCCCCceeEEEEccccccCCchHH-HHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE Q 019282 241 GEDMDFTKFGSGVVYDLIYASAVFLHMPDKLV-WVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343) Q Consensus 241 ~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~-~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343) ++..++.. ..+.+||+|++--||.+-..... ..-++-+..++.+ + ....+-+...++.+.-++| T Consensus 139 ~d~~~~L~-~~~~s~DVVY~DPMFp~~~ksa~vkk~m~~lr~L~~~-----------d---~~~~ell~~Alr~Ar~RVV 203 (234) T PF04445_consen 139 GDALEYLR-QPDNSFDVVYFDPMFPERKKSALVKKEMRVLRDLAGH-----------D---PDAEELLEEALRVARKRVV 203 (234) T ss_dssp S-CCCHCC-CHSS--SEEEE--S-----TTTT-SHHHHHHHHHHSH-----------H---TTGGGGHHHHHHH-SSEEE T ss_pred CCHHHHHh-hcCCCCCEEEECCCCCCcccccccccchHHHHHhhcc-----------C---cCHHHHHHHHHHhcCcEEE Confidence 76666654 34689999999999977322211 0012222222222 0 0113445666777787777 Q ss_pred Eeeec Q 019282 320 GKKTH 324 (343) Q Consensus 320 ~~~~~ 324 (343) -++.. T Consensus 204 vKrp~ 208 (234) T PF04445_consen 204 VKRPR 208 (234) T ss_dssp EEEET T ss_pred EecCC Confidence 65543 No 267 >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. Probab=93.88 E-value=0.034 Score=44.86 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=41.7 Q ss_pred ceeEEEEccccccC----CchHHHHHHHHHHhccCCCCcEEEEEecc--cc----------c-----cCCCHHHHHHHHH Q 019282 254 VYDLIYASAVFLHM----PDKLVWVGLERLASKLRPYDGRIFVSHNI--KF----------C-----SRLGGEECTKRLT 312 (343) Q Consensus 254 ~fDlIvs~~v~~hl----~~~~~~~~L~~l~r~LkP~GG~lvi~~~~--~~----------~-----~~~~~~~l~~~L~ 312 (343) .||+|+|..+--++ +|.....+|+++++.|+| ||.|++.-.. .+ . -.+.++.+...|. T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p-GG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~ 79 (110) T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP-GGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLL 79 (110) T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHT T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC-CCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHH Confidence 48999997765433 667777899999999999 9999998210 00 0 0122677777776 Q ss_pred h--cCCcEEE Q 019282 313 S--LGLEYIG 320 (343) Q Consensus 313 ~--aGf~~v~ 320 (343) + .||...+ T Consensus 80 ~~evGF~~~e 89 (110) T PF06859_consen 80 EPEVGFSSVE 89 (110) T ss_dssp STTT---EEE T ss_pred hcccceEEEE Confidence 6 5888765 No 268 >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity Probab=93.71 E-value=0.081 Score=42.53 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=26.7 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcCh Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDE 215 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~ 215 (343) .+.....|||||.|.+...|.. .++.+.|+|. T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~----EGy~G~GiD~ 88 (112) T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNS----EGYPGWGIDA 88 (112) T ss_pred CCCCceEEccCCchHHHHHHHh----CCCCcccccc Confidence 3456799999999999887777 6888999987 No 269 >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B. Probab=93.62 E-value=0.4 Score=44.36 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=32.1 Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC--------CceEEEEcChhHHH Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP--------ENFHCLERDELSLM 219 (343) Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~--------~~~~vvdid~s~~~ 219 (343) .+.+............+|+|+|.|+|.++..+++++.. ..++.+++++.... T Consensus 5 ~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~ 64 (252) T PF02636_consen 5 WIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRE 64 (252) T ss_dssp HHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHH T ss_pred HHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHH Confidence 34444443222222469999999999999999997754 35777777765433 No 270 >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] Probab=93.19 E-value=0.44 Score=46.16 Aligned_cols=101 Identities=16% Similarity=0.216 Sum_probs=60.8 Q ss_pred HHHHHhcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC Q 019282 171 EFLAEASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF 249 (343) Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~ 249 (343) ..+.. ..++|+.+|+=+|+| -|.++.+++++.. ..++.+|.+....+.++++.+ ...+...+.+..+. T Consensus 157 ~alk~-~~~~pG~~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~ 225 (339) T COG1064 157 RALKK-ANVKPGKWVAVVGAGGLGHMAVQYAKAMG---AEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEA 225 (339) T ss_pred eehhh-cCCCCCCEEEEECCcHHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHH Confidence 33443 678999999999887 4556666666544 455555555555555565422 12222211122111 Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ..+.||+|+..-. . . .+....+.|++ ||++++. T Consensus 226 -~~~~~d~ii~tv~-~------~--~~~~~l~~l~~-~G~~v~v 258 (339) T COG1064 226 -VKEIADAIIDTVG-P------A--TLEPSLKALRR-GGTLVLV 258 (339) T ss_pred -hHhhCcEEEECCC-h------h--hHHHHHHHHhc-CCEEEEE Confidence 1234999987533 1 1 67889999999 9999886 No 271 >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] Probab=93.08 E-value=0.2 Score=47.27 Aligned_cols=124 Identities=20% Similarity=0.149 Sum_probs=76.3 Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhc-ccCCCCCCCcEEEecccCCc Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYEL-PSQGLLHKRPIIVRGEDMDF 246 (343) Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~-~~~~~~~~~~~~~~~~~~dl 246 (343) +++..+.... +...++||=||.|-|.+....+++-.-.++...++|..-.......-. ...++.+.++.+.-|+...| T Consensus 109 emi~~l~l~s-~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~f 187 (337) T KOG1562|consen 109 EMIAHLALCS-HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLF 187 (337) T ss_pred eeeecccccc-CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHH Confidence 3444443322 344568999999999998877765322456677777655544432211 12455666777776655555 Q ss_pred CCCCCCCceeEEEEccccccCCc--hHHHHHHHHHHhccCCCCcEEEEE Q 019282 247 TKFGSGVVYDLIYASAVFLHMPD--KLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~--~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .+....++||+|+.-..=.-.+. .....+++.+.+.||| ||++++. T Consensus 188 l~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~-dgv~~~q 235 (337) T KOG1562|consen 188 LEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKG-DGVVCTQ 235 (337) T ss_pred HHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCC-CcEEEEe Confidence 44434689999986322211121 1234588899999999 9998775 No 272 >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. Probab=93.01 E-value=1.2 Score=43.08 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=56.6 Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHc--------CC--------CceEEEEcChhHHHHHHHHhcccC--CCCCCCcEEE Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYL--------NP--------ENFHCLERDELSLMAAFRYELPSQ--GLLHKRPIIV 239 (343) Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~--------~~--------~~~~vvdid~s~~~~a~a~~~~~~--~~~~~~~~~~ 239 (343) ..+...+|+|+||.+|..++.+.... .. -.+.--|+..+.-..-+. .+... .....+..++ T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~-~l~~~~~~~~~~~~~f~ 91 (334) T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFK-SLPSFQQSLKKFRNYFV 91 (334) T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHH-CHHHHHHHHHHTTSEEE T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHH-hChhhhhccCCCceEEE Confidence 44455799999999999999876522 11 123344444332211111 11000 0000133344 Q ss_pred ecccCCc-CCCCCCCceeEEEEccccccCCch-------------------------------------HHHHHHHHHHh Q 019282 240 RGEDMDF-TKFGSGVVYDLIYASAVFLHMPDK-------------------------------------LVWVGLERLAS 281 (343) Q Consensus 240 ~~~~~dl-~~~~~~~~fDlIvs~~v~~hl~~~-------------------------------------~~~~~L~~l~r 281 (343) .+--..| ..+.+.++.|++++...+||+... ++..+|+.=++ T Consensus 92 ~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ 171 (334) T PF03492_consen 92 SGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE 171 (334) T ss_dssp EEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh Confidence 3322233 223368899999999999987531 11245555567 Q ss_pred ccCCCCcEEEEE Q 019282 282 KLRPYDGRIFVS 293 (343) Q Consensus 282 ~LkP~GG~lvi~ 293 (343) -|+| ||+++++ T Consensus 172 ELv~-GG~mvl~ 182 (334) T PF03492_consen 172 ELVP-GGRMVLT 182 (334) T ss_dssp HEEE-EEEEEEE T ss_pred eecc-CcEEEEE Confidence 8999 9999987 No 273 >TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. Probab=92.86 E-value=0.39 Score=45.87 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=54.3 Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343) Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343) +++.+.+.+.+.++..++|.=||.|..+..+++.+++..++++|.|+.. .+.+++... .. ..++.++.++-.++.. T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~A--l~~ak~~L~-~~-~~R~~~i~~nF~~l~~ 83 (305) T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQA--IAFAKERLS-DF-EGRVVLIHDNFANFFE 83 (305) T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHH--HHHHHHHHh-hc-CCcEEEEeCCHHHHHH Confidence 4445555567788889999999999999999998765555555555544 444444322 12 2356666653222221 Q ss_pred CC---CCCceeEEEEc Q 019282 249 FG---SGVVYDLIYAS 261 (343) Q Consensus 249 ~~---~~~~fDlIvs~ 261 (343) .. ..+++|.|++. T Consensus 84 ~l~~~~~~~vDgIl~D 99 (305) T TIGR00006 84 HLDELLVTKIDGILVD 99 (305) T ss_pred HHHhcCCCcccEEEEe Confidence 11 12468888764 No 274 >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. Probab=92.57 E-value=3 Score=38.92 Aligned_cols=132 Identities=13% Similarity=0.096 Sum_probs=83.4 Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCC-CCCCcEEEecccCCcC-CCC--------CC Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGL-LHKRPIIVRGEDMDFT-KFG--------SG 252 (343) Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~-~~~~~~~~~~~~~dl~-~~~--------~~ 252 (343) ..|+.+|||-=.-...+. .+ .++++.++|.......+.+.+.+.+. ...+...+.. |+. ++. .. T Consensus 83 ~qvV~LGaGlDTr~~Rl~--~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~---Dl~~~w~~~L~~~gfd~ 156 (260) T TIGR00027 83 RQVVILGAGLDTRAYRLP--WP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPV---DLRQDWPAALAAAGFDP 156 (260) T ss_pred cEEEEeCCccccHHHhcC--CC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEecc---CchhhHHHHHHhCCCCC Confidence 469999999754444332 12 35789999987766554444333222 1223344433 332 111 11 Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc------------------------ccCCCHHHHH Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF------------------------CSRLGGEECT 308 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~------------------------~~~~~~~~l~ 308 (343) +.--++++-.++.+++......+|+.+.+...| |+.+++....+. ...+.++++. T Consensus 157 ~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~-gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (260) T TIGR00027 157 TAPTAWLWEGLLMYLTEEAVDALLAFIAELSAP-GSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVA 235 (260) T ss_pred CCCeeeeecchhhcCCHHHHHHHHHHHHHhCCC-CcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHH Confidence 234577788899999999998999999999989 999887631110 0011278888 Q ss_pred HHHHhcCCcEEEe Q 019282 309 KRLTSLGLEYIGK 321 (343) Q Consensus 309 ~~L~~aGf~~v~~ 321 (343) ++|+..||+.... T Consensus 236 ~~l~~~Gw~~~~~ 248 (260) T TIGR00027 236 EWLAERGWRASEH 248 (260) T ss_pred HHHHHCCCeeecC Confidence 8999999987654 No 275 >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] Probab=92.15 E-value=0.62 Score=45.68 Aligned_cols=141 Identities=14% Similarity=0.202 Sum_probs=82.1 Q ss_pred CCchhhhhhhhhcc-CCCc-cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHH Q 019282 146 CPGELLVEEHHSNY-GEPW-AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFR 223 (343) Q Consensus 146 ~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a 223 (343) .++...+++|+.-+ +..+ +...+....+.+.+.++++....|+|.|.|......+.+.....-.++.+...+...+.. T Consensus 155 ipd~~~L~~hYk~~ss~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~ 234 (419) T KOG3924|consen 155 IPDPAILNQHYKSFSSETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAEL 234 (419) T ss_pred cCCHHHHHHhhccccccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHH Confidence 34455567666444 3333 445556666777789999999999999999999998887655444455544333332222 Q ss_pred H--hccc----CCCCCCCcEEEecccCCcCCCC----CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 224 Y--ELPS----QGLLHKRPIIVRGEDMDFTKFG----SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 224 ~--~~~~----~~~~~~~~~~~~~~~~dl~~~~----~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) + .+.. .|...+....+.+ ++.+.. .....++|+++.+. .-++... -++++...+++ |-+++-. T Consensus 235 ~~~~~kk~~k~fGk~~~~~~~i~g---sf~~~~~v~eI~~eatvi~vNN~~-Fdp~L~l--r~~eil~~ck~-gtrIiS~ 307 (419) T KOG3924|consen 235 NKEEFKKLMKHFGKKPNKIETIHG---SFLDPKRVTEIQTEATVIFVNNVA-FDPELKL--RSKEILQKCKD-GTRIISS 307 (419) T ss_pred HHHHHHHHHHHhCCCcCceeeccc---ccCCHHHHHHHhhcceEEEEeccc-CCHHHHH--hhHHHHhhCCC-cceEecc Confidence 1 1111 1222223334433 332111 23457888887665 3344333 56789999998 7666543 No 276 >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] Probab=92.11 E-value=0.71 Score=45.66 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=65.6 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceE-EEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCce Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFH-CLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~-vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343) +...++.||||..+-+|.=+.++|....+.+.. ..|........-.+ ...+.|.. +.+.+..+...|+.-...++| T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~-n~~rlGv~--ntiv~n~D~~ef~~~~~~~~f 313 (460) T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKA-NLHRLGVT--NTIVSNYDGREFPEKEFPGSF 313 (460) T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHH-HHHHhCCC--ceEEEccCcccccccccCccc Confidence 566889999999999999999999877665543 33333332222211 11223432 334444433344322233489 Q ss_pred eEEEEcccccc--CC--c----------------hHHHHHHHHHHhccCCCCcEEEEE Q 019282 256 DLIYASAVFLH--MP--D----------------KLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 256 DlIvs~~v~~h--l~--~----------------~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) |.|..-.-..- +. + .....+|.....+++| ||+|+.+ T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~-GGvLVYS 370 (460) T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKA-GGVLVYS 370 (460) T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccC-CcEEEEE Confidence 99985321111 00 0 0123578888999999 9999876 No 277 >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. Probab=91.77 E-value=0.36 Score=43.49 Aligned_cols=131 Identities=11% Similarity=0.078 Sum_probs=61.5 Q ss_pred CCeEEEEcCCcCHHHHHHHHHc----CCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC----CCC Q 019282 182 NSHVLEIGCGTLRVGVHFIRYL----NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG----SGV 253 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~----~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~----~~~ 253 (343) ...|+|+|.=.|+-+..++..+ +...+.++|+|......... +......++.++.|+..+..... ... T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~----e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~ 108 (206) T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAI----ESHPMSPRITFIQGDSIDPEIVDQVRELAS 108 (206) T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GG----GG----TTEEEEES-SSSTHHHHTSGSS-- T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHH----hhccccCceEEEECCCCCHHHHHHHHHhhc Confidence 3489999999999999887644 44667777777654332211 11112357888888655432111 112 Q ss_pred ceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec------------ccccc-CCCHHHHHHHHHhcC-CcE Q 019282 254 VYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN------------IKFCS-RLGGEECTKRLTSLG-LEY 318 (343) Q Consensus 254 ~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~------------~~~~~-~~~~~~l~~~L~~aG-f~~ 318 (343) ..+-++...=-+|..+.. ...|+....+++| |+++++.+. .++.. ......+.+.|.+.. |++ T Consensus 109 ~~~~vlVilDs~H~~~hv-l~eL~~y~plv~~-G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~~f~i 185 (206) T PF04989_consen 109 PPHPVLVILDSSHTHEHV-LAELEAYAPLVSP-GSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHPDFEI 185 (206) T ss_dssp --SSEEEEESS----SSH-HHHHHHHHHT--T-T-EEEETSHHHHHHHHS-------------HHHHHHHHHTTTTEEE T ss_pred cCCceEEEECCCccHHHH-HHHHHHhCccCCC-CCEEEEEeccccccccccccccchhhhhHHHHHHHHHHHHCCCcEe Confidence 234233222223333322 2367889999999 999998731 11111 111677888887765 543 No 278 >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] Probab=91.54 E-value=1.6 Score=42.59 Aligned_cols=113 Identities=16% Similarity=0.198 Sum_probs=65.8 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCC----ceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC--- Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPE----NFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF--- 249 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~----~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~--- 249 (343) ++++|+.+|||...-+|.=+..+++.+.+. .+.+-|+|......-. .+.. .+..........+...++.. T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~-~q~~--~l~~~~~~v~~~~~~~~p~~~~~ 227 (375) T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLV-HQLK--RLPSPNLLVTNHDASLFPNIYLK 227 (375) T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHH-HHHh--ccCCcceeeecccceeccccccc Confidence 688999999999999999999998876533 4556666654432221 1111 11221222222222223222 Q ss_pred --C--CCCceeEEEEc------cccccCCch---------------HHHHHHHHHHhccCCCCcEEEEE Q 019282 250 --G--SGVVYDLIYAS------AVFLHMPDK---------------LVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 250 --~--~~~~fDlIvs~------~v~~hl~~~---------------~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) . ....||-|.+- .++.+-++- -...+|.+..++||+ ||.++.+ T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~-GG~lVYS 295 (375) T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKV-GGRLVYS 295 (375) T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcC-CCEEEEe Confidence 1 23468988863 233222221 112578889999999 9999876 No 279 >COG4301 Uncharacterized conserved protein [Function unknown] Probab=91.53 E-value=4.5 Score=37.57 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=67.0 Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCC----CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecc-cCCcCCCCCCC Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNP----ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGE-DMDFTKFGSGV 253 (343) Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~----~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~-~~dl~~~~~~~ 253 (343) +..+...+|+|.|+-.=+..+.+.+.. ..+..+|++.+-+... ++.+.. ..+.-.+.-+.++ ...+...+ .+ T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~t-a~ai~~-~y~~l~v~~l~~~~~~~La~~~-~~ 152 (321) T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRAT-ATAILR-EYPGLEVNALCGDYELALAELP-RG 152 (321) T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHH-HHHHHH-hCCCCeEeehhhhHHHHHhccc-CC Confidence 344678999999999999999887755 4566777776554433 222221 1222122222221 01112222 22 Q ss_pred cee-EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 254 VYD-LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 254 ~fD-lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .-- .++...++..+.+.+...+|..+...|+| |-.+++. T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~p-Gd~~LlG 192 (321) T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRP-GDYFLLG 192 (321) T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCCC-cceEEEe Confidence 222 23345677788888888899999999999 8888774 No 280 >KOG2730 consensus Methylase [General function prediction only] Probab=91.40 E-value=0.14 Score=46.48 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=61.5 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC-C-CCCceeE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF-G-SGVVYDL 257 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~-~-~~~~fDl 257 (343) ....|+|.-||-|+.+..++.. ..+|+.||..+..++.++.+.+ .|+++ ++.+++|+..|+-.. . ....+|+ T Consensus 94 ~~~~iidaf~g~gGntiqfa~~----~~~VisIdiDPikIa~AkhNaeiYGI~~-rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263) T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ----GPYVIAIDIDPVKIACARHNAEVYGVPD-RITFICGDFLDLASKLKADKIKYDC 168 (263) T ss_pred CcchhhhhhhcCCchHHHHHHh----CCeEEEEeccHHHHHHHhccceeecCCc-eeEEEechHHHHHHHHhhhhheeee Confidence 4458999999999999999884 4457777777788888887766 67766 999999855554211 1 1234566 Q ss_pred EEEccccccCCchHHHHHHHHHHhccCC Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRP 285 (343) Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP 285 (343) |+.+.- +-++.....-+-.+...++| T Consensus 169 vf~spp--wggp~y~~~~~~DL~~~~~p 194 (263) T KOG2730|consen 169 VFLSPP--WGGPSYLRADVYDLETHLKP 194 (263) T ss_pred eecCCC--CCCcchhhhhhhhhhhhcch Confidence 655421 12222222334445555555 No 281 >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T Probab=90.21 E-value=2.9 Score=40.85 Aligned_cols=106 Identities=16% Similarity=0.228 Sum_probs=60.1 Q ss_pred hcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC-----cCCC Q 019282 176 ASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD-----FTKF 249 (343) Q Consensus 176 ~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d-----l~~~ 249 (343) ...+.++.+||.+|||. |..+..+++..+...+.++ +.+..+...+++.. +. ..+.....+ +.++ T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~--~~~~~~~~~~~~~~--~~-----~vi~~~~~~~~~~~l~~~ 249 (386) T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAI--DRVPERLEMARSHL--GA-----ETINFEEVDDVVEALREL 249 (386) T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHcC--Cc-----EEEcCCcchHHHHHHHHH Confidence 35677889999999988 8888888887643234444 44444444444321 11 111111111 1112 Q ss_pred CCCCceeEEEEcccc-----------ccC----CchHHHHHHHHHHhccCCCCcEEEEE Q 019282 250 GSGVVYDLIYASAVF-----------LHM----PDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 250 ~~~~~fDlIvs~~v~-----------~hl----~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .....+|+|+-.-.- .|. ++. ...+.++.++++| +|++++. T Consensus 250 ~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~-~G~iv~~ 305 (386) T cd08283 250 TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK-GGTVSII 305 (386) T ss_pred cCCCCCCEEEECCCCcccccccccccccccccccCc--hHHHHHHHHHhcc-CCEEEEE Confidence 123368888764211 111 222 2378999999999 9999875 No 282 >PRK13699 putative methylase; Provisional Probab=90.03 E-value=0.93 Score=41.42 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=30.7 Q ss_pred HHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE Q 019282 273 WVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343) Q Consensus 273 ~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343) ...+.+++|+||| ||.+++... ......+...++++||.+.. T Consensus 52 ~~~l~E~~RVLKp-gg~l~if~~-----~~~~~~~~~al~~~GF~l~~ 93 (227) T PRK13699 52 QPACNEMYRVLKK-DALMVSFYG-----WNRVDRFMAAWKNAGFSVVG 93 (227) T ss_pred HHHHHHHHHHcCC-CCEEEEEec-----cccHHHHHHHHHHCCCEEee Confidence 4588999999999 999876432 11234566778899998664 No 283 >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] Probab=89.79 E-value=3.3 Score=39.60 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=42.5 Q ss_pred hccCCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHH Q 019282 157 SNYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAA 221 (343) Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a 221 (343) +||...|++...+.+++.. ......|+.+|||.-.....+...........+++|-++.... T Consensus 66 Gy~~R~~aI~~~v~~Fl~~---~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~r 127 (335) T KOG2918|consen 66 GYWARTMAIRHAVRAFLEQ---TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVER 127 (335) T ss_pred hhhHHHHHHHHHHHHHHHh---cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHH Confidence 3333333455566666654 4555789999999998888888766445667888887766554 No 284 >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] Probab=89.75 E-value=0.47 Score=47.20 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=51.3 Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEc Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343) Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343) ..|||||+|||.++...+++.. .. |+.++.-..|...+++... .+..+ .+..+.....+....+ ...-|.++.- T Consensus 68 v~vLdigtGTGLLSmMAvraga-D~--vtA~EvfkPM~d~arkI~~kng~Sd-kI~vInkrStev~vg~-~~RadI~v~e 142 (636) T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA-DS--VTACEVFKPMVDLARKIMHKNGMSD-KINVINKRSTEVKVGG-SSRADIAVRE 142 (636) T ss_pred EEEEEccCCccHHHHHHHHhcC-Ce--EEeehhhchHHHHHHHHHhcCCCcc-ceeeeccccceeeecC-cchhhhhhHh Confidence 4699999999999998888653 33 4444444455555566544 34433 5666654334443221 2235555443 Q ss_pred cccccC-CchHHHHHHHHHHh-ccCC Q 019282 262 AVFLHM-PDKLVWVGLERLAS-KLRP 285 (343) Q Consensus 262 ~v~~hl-~~~~~~~~L~~l~r-~LkP 285 (343) .....+ +...++ .++..++ +++| T Consensus 143 ~fdtEligeGalp-s~qhAh~~L~~~ 167 (636) T KOG1501|consen 143 DFDTELIGEGALP-SLQHAHDMLLVD 167 (636) T ss_pred hhhhhhhccccch-hHHHHHHHhccc Confidence 222222 222332 3455544 4454 No 285 >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species. Probab=89.20 E-value=0.58 Score=40.47 Aligned_cols=71 Identities=17% Similarity=0.274 Sum_probs=48.7 Q ss_pred CCceeEEEEccccccCCc-----h----HHHHHHHHHHhccCCCCcEEEEEecc-----cc--ccCCCHHHHHHHHHhcC Q 019282 252 GVVYDLIYASAVFLHMPD-----K----LVWVGLERLASKLRPYDGRIFVSHNI-----KF--CSRLGGEECTKRLTSLG 315 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~-----~----~~~~~L~~l~r~LkP~GG~lvi~~~~-----~~--~~~~~~~~l~~~L~~aG 315 (343) .++||.+.|..+++|.+- + .....+.++.++||| ||.+++..+. .| .+-|++..+.-++ .| T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~-GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~--~g 137 (177) T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKP-GGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMF--YG 137 (177) T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhcc-CCeEEEEeecCCcceEEecceeecHhHHHHHh--CC Confidence 578999999999998632 1 122478899999999 9999987422 12 3334555554333 79 Q ss_pred CcEEEeeecc Q 019282 316 LEYIGKKTHD 325 (343) Q Consensus 316 f~~v~~~~~~ 325 (343) |+.+..-..+ T Consensus 138 fe~i~tfs~~ 147 (177) T PF03269_consen 138 FEWIDTFSGD 147 (177) T ss_pred cEEEeeeccC Confidence 9988765443 No 286 >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] Probab=88.98 E-value=4.7 Score=37.33 Aligned_cols=141 Identities=18% Similarity=0.169 Sum_probs=77.0 Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCc-eEEEEcChhHHHHH--HHHhcccCCCCCCCcEEEecccCCcC-CCC- Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNPEN-FHCLERDELSLMAA--FRYELPSQGLLHKRPIIVRGEDMDFT-KFG- 250 (343) Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~-~~vvdid~s~~~~a--~a~~~~~~~~~~~~~~~~~~~~~dl~-~~~- 250 (343) .++++|+.+||=+|.+.|+.-.+..+-..+.+ ++.++.+...-..- .+++ .. +++-+..++ ..+ .|. T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-----Rt--NiiPIiEDA-rhP~KYRm 222 (317) T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-----RT--NIIPIIEDA-RHPAKYRM 222 (317) T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-----cC--CceeeeccC-CCchheee Confidence 36789999999999999999999888665544 45666555433222 1221 11 222221111 111 111 Q ss_pred CCCceeEEEEccccccCCch-HHHHHHHHHHhccCCCCcEEEEEeccccccCCC------HHHHHHHHHhcCCcEEEeee Q 019282 251 SGVVYDLIYASAVFLHMPDK-LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG------GEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~-~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~------~~~l~~~L~~aGf~~v~~~~ 323 (343) .-.-.|+|++ .++.+ +...+.-+..--||+ ||.++|+...+-+...- ..+. +.|++.-++..+.-+ T Consensus 223 lVgmVDvIFa-----Dvaqpdq~RivaLNA~~FLk~-gGhfvisikancidstv~ae~vFa~Ev-~klqee~lkP~Eqvt 295 (317) T KOG1596|consen 223 LVGMVDVIFA-----DVAQPDQARIVALNAQYFLKN-GGHFVISIKANCIDSTVFAEAVFAAEV-KKLQEEQLKPKEQVT 295 (317) T ss_pred eeeeEEEEec-----cCCCchhhhhhhhhhhhhhcc-CCeEEEEEecccccccccHHHHHHHHH-HHHHHhccCchheec Confidence 1235677765 34333 233345567788999 99999985433222211 2222 356666676655555 Q ss_pred ccccccch Q 019282 324 HDSLLFNH 331 (343) Q Consensus 324 ~~~l~~~~ 331 (343) ..++--.| T Consensus 296 LEP~erdh 303 (317) T KOG1596|consen 296 LEPFERDH 303 (317) T ss_pred cccccCCc Confidence 44443333 No 287 >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] Probab=88.33 E-value=2.5 Score=38.80 Aligned_cols=101 Identities=23% Similarity=0.151 Sum_probs=50.4 Q ss_pred HHHHHHHHhcC-C-CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEec--cc Q 019282 168 DVFEFLAEASH-I-TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRG--ED 243 (343) Q Consensus 168 ~~~~~l~~~~~-l-~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~--~~ 243 (343) .+.+.|....+ + .++.++||||.|.-..=-.+-..--.-.++++++|...+..+.+.-..+.++.. .+.+... .. T Consensus 63 ~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~-~I~lr~qk~~~ 141 (292) T COG3129 63 HLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLER-AIRLRRQKDSD 141 (292) T ss_pred HHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhh-heeEEeccCcc Confidence 34444444322 2 356789999888754311111100113456777777766666443222222221 2222211 12 Q ss_pred CCcCCCC-CCCceeEEEEccccccCCc Q 019282 244 MDFTKFG-SGVVYDLIYASAVFLHMPD 269 (343) Q Consensus 244 ~dl~~~~-~~~~fDlIvs~~v~~hl~~ 269 (343) .-|++.. ..+.||++.|+--||.-.+ T Consensus 142 ~if~giig~nE~yd~tlCNPPFh~s~~ 168 (292) T COG3129 142 AIFNGIIGKNERYDATLCNPPFHDSAA 168 (292) T ss_pred ccccccccccceeeeEecCCCcchhHH Confidence 2233332 3678999999999975443 No 288 >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional Probab=86.77 E-value=6.2 Score=40.51 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=57.8 Q ss_pred CCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC---------cC- Q 019282 179 ITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD---------FT- 247 (343) Q Consensus 179 l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d---------l~- 247 (343) ..++.+||=+|||. |..+...++.++. .++++|+++ ...+.++... . ....+.....+ .. T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~--~rle~aeslG---A---~~v~i~~~e~~~~~~gya~~~s~ 232 (509) T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRP--EVAEQVESMG---A---EFLELDFEEEGGSGDGYAKVMSE 232 (509) T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCH--HHHHHHHHcC---C---eEEEeccccccccccchhhhcch Confidence 45788999999995 6666677776654 455666555 4444444422 1 10111100000 00 Q ss_pred C--------CC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 248 K--------FG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 248 ~--------~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) + +. ..+.+|+|+.......-+.+.. +.+++.+.+|| ||+++.. T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~l--it~~~v~~mkp-GgvIVdv 284 (509) T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALIPGKPAPKL--ITAEMVASMKP-GSVIVDL 284 (509) T ss_pred hHHHHHHHHHHhccCCCCEEEECCCCCcccCcch--HHHHHHHhcCC-CCEEEEE Confidence 0 00 0146899998665433223322 45999999999 9998754 No 289 >KOG2920 consensus Predicted methyltransferase [General function prediction only] Probab=86.13 E-value=0.91 Score=42.69 Aligned_cols=120 Identities=20% Similarity=0.216 Sum_probs=62.2 Q ss_pred ccchHHHHHHHHHhc---CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHH------------HHHHhcc Q 019282 163 WAGGRDVFEFLAEAS---HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMA------------AFRYELP 227 (343) Q Consensus 163 ~~~~~~~~~~l~~~~---~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~------------a~a~~~~ 227 (343) |...-..+..+.+.. -...+++|||+|||.|.-.+....... +.+.-.|.+.... ....+.. T Consensus 95 wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~---~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~ 171 (282) T KOG2920|consen 95 WECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGA---VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEK 171 (282) T ss_pred eecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhcc---ceeeeEecchhheeeecccceecchhhhhhhh Confidence 555555666666442 234578999999999988877655321 2222222222222 1110100 Q ss_pred cCCCCCCCcEEEecccCCcCCCC--CCC--ceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 228 SQGLLHKRPIIVRGEDMDFTKFG--SGV--VYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 228 ~~~~~~~~~~~~~~~~~dl~~~~--~~~--~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +.. .+..+. ...+.++. ..+ .||+|.++.++........ -+......++++ +|.++.. T Consensus 172 e~~----~~~~i~--~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~-~~~~~r~~l~~~-D~~~~~a 233 (282) T KOG2920|consen 172 ENH----KVDEIL--NSLLSDGVFNHTERTHYDLILSSETIYSIDSLAV-LYLLHRPCLLKT-DGVFYVA 233 (282) T ss_pred hcc----cceecc--ccccccchhhhccccchhhhhhhhhhhCcchhhh-hHhhhhhhcCCc-cchhhhh Confidence 000 000000 01000111 123 7999999998855544433 125666778888 9988765 No 290 >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. Probab=85.89 E-value=1.5 Score=42.08 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=47.2 Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC-- Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG-- 250 (343) Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~-- 250 (343) +.+.+...++..++|.--|.|+.+..+++.+++..+.++|.|+.....+ +++... . ..+..++.++-.++.++. T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a--~~~l~~-~-~~r~~~~~~~F~~l~~~l~~ 87 (310) T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERA--KERLKK-F-DDRFIFIHGNFSNLDEYLKE 87 (310) T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHH--HCCTCC-C-CTTEEEEES-GGGHHHHHHH T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHH--HHHHhh-c-cceEEEEeccHHHHHHHHHH Confidence 3344467788899999999999999999988876666777666554444 443321 1 346777765222221110 Q ss_pred --CCCceeEEEEc Q 019282 251 --SGVVYDLIYAS 261 (343) Q Consensus 251 --~~~~fDlIvs~ 261 (343) ....+|.|++- T Consensus 88 ~~~~~~~dgiL~D 100 (310) T PF01795_consen 88 LNGINKVDGILFD 100 (310) T ss_dssp TTTTS-EEEEEEE T ss_pred ccCCCccCEEEEc Confidence 12478888763 No 291 >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] Probab=85.62 E-value=2.5 Score=40.65 Aligned_cols=102 Identities=12% Similarity=0.058 Sum_probs=64.5 Q ss_pred hcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc--CCc----CC Q 019282 176 ASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED--MDF----TK 248 (343) Q Consensus 176 ~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~--~dl----~~ 248 (343) ...+++|.+||=+|+|+ |..+...++.++...+.++|++...+..+ +++..... ....... .++ .. T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~A--k~~Ga~~~-----~~~~~~~~~~~~~~~v~~ 236 (354) T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELA--KKFGATVT-----DPSSHKSSPQELAELVEK 236 (354) T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHH--HHhCCeEE-----eeccccccHHHHHHHHHh Confidence 35788999999999994 77777778888888888888777555554 55432111 1111000 011 11 Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ...+..+|+.+-...++ . .++.....+++ ||.+++. T Consensus 237 ~~g~~~~d~~~dCsG~~------~--~~~aai~a~r~-gGt~vlv 272 (354) T KOG0024|consen 237 ALGKKQPDVTFDCSGAE------V--TIRAAIKATRS-GGTVVLV 272 (354) T ss_pred hccccCCCeEEEccCch------H--HHHHHHHHhcc-CCEEEEe Confidence 11224588887655442 2 67778889999 9998776 No 292 >KOG4058 consensus Uncharacterized conserved protein [Function unknown] Probab=85.62 E-value=2.7 Score=36.01 Aligned_cols=55 Identities=13% Similarity=0.127 Sum_probs=34.7 Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHh Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYE 225 (343) Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~ 225 (343) +.++.....+.-++..+.+|+|.|.|+.-...++.. . ...+|++.++-..++.+- T Consensus 59 eQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~--~~a~GvELNpwLVaysrl 113 (199) T KOG4058|consen 59 EQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-L--RPAVGVELNPWLVAYSRL 113 (199) T ss_pred HHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-C--CcCCceeccHHHHHHHHH Confidence 344444444555666799999999999988887743 1 234445555555555543 No 293 >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio Probab=85.52 E-value=3.2 Score=39.00 Aligned_cols=99 Identities=23% Similarity=0.285 Sum_probs=55.5 Q ss_pred hcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC---CCCC Q 019282 176 ASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT---KFGS 251 (343) Q Consensus 176 ~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~---~~~~ 251 (343) ...+.++.+||..|+| .|..+..+++..+ +.++.++.+.......++. +. . ..+........ .... T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G---~~V~~~~~s~~~~~~~~~~---g~-~---~~~~~~~~~~~~~~~~~~ 229 (338) T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMG---AAVIAVDIKEEKLELAKEL---GA-D---EVLNSLDDSPKDKKAAGL 229 (338) T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcC---CEEEEEcCCHHHHHHHHHh---CC-C---EEEcCCCcCHHHHHHHhc Confidence 3457788899998876 3677777777543 3455555555444444321 21 1 11111111110 0112 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .+.+|+|+..... . ..++++.+.|++ +|.++.. T Consensus 230 ~~~~D~vid~~g~-----~---~~~~~~~~~l~~-~G~~v~~ 262 (338) T cd08254 230 GGGFDVIFDFVGT-----Q---PTFEDAQKAVKP-GGRIVVV 262 (338) T ss_pred CCCceEEEECCCC-----H---HHHHHHHHHhhc-CCEEEEE Confidence 4568988754221 1 267889999999 9998764 No 294 >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing Probab=84.20 E-value=3 Score=38.99 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=36.6 Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-----CCCceEEEEcCh Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-----NPENFHCLERDE 215 (343) Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-----~~~~~~vvdid~ 215 (343) .++..+.+.--+.++..++|+|||.|.++.+++..+ +...+..+|... T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259) T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259) T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc Confidence 355666665556788899999999999999999987 345666777654 No 295 >PRK09880 L-idonate 5-dehydrogenase; Provisional Probab=84.13 E-value=12 Score=35.72 Aligned_cols=99 Identities=12% Similarity=0.170 Sum_probs=52.6 Q ss_pred cCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC-CCCc Q 019282 177 SHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG-SGVV 254 (343) Q Consensus 177 ~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~ 254 (343) ....++.+||=+||| .|.++..+++......+.+++.+. ...+.++++... ..+.....++.+.. ..+. T Consensus 165 ~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~--~~~~~a~~lGa~-------~vi~~~~~~~~~~~~~~g~ 235 (343) T PRK09880 165 AGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP--RSLSLAREMGAD-------KLVNPQNDDLDHYKAEKGY 235 (343) T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH--HHHHHHHHcCCc-------EEecCCcccHHHHhccCCC Confidence 345578899989875 344555556654433344555544 344444443211 11111111221111 1235 Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +|+|+-. .+... .+....+.|+| ||++++. T Consensus 236 ~D~vid~-----~G~~~---~~~~~~~~l~~-~G~iv~~ 265 (343) T PRK09880 236 FDVSFEV-----SGHPS---SINTCLEVTRA-KGVMVQV 265 (343) T ss_pred CCEEEEC-----CCCHH---HHHHHHHHhhc-CCEEEEE Confidence 8888653 33322 57788899999 9999875 No 296 >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. Probab=83.84 E-value=22 Score=35.03 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=28.2 Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcC-----CCceEEEEcCh Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLN-----PENFHCLERDE 215 (343) Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~-----~~~~~vvdid~ 215 (343) ...-.+..+|+|+|.|.|.--..|.+.+. +..+++|+++. T Consensus 105 A~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~ 149 (374) T PF03514_consen 105 AFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGP 149 (374) T ss_pred HhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccC Confidence 33444677999999999987777776552 23567777766 No 297 >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] Probab=83.77 E-value=5.1 Score=38.16 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=50.2 Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCc-eEEEEcChhHHHHHHHHhcccCCCCCCCcEEEec Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPEN-FHCLERDELSLMAAFRYELPSQGLLHKRPIIVRG 241 (343) Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~-~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~ 241 (343) +++...+.+..+++...+|.--|.|+.+..++..++..+ ++++|.|+.....+ +++... ...++.++.+ T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a--~~~l~~--~~~r~~~v~~ 80 (314) T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIA--KERLKE--FDGRVTLVHG 80 (314) T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHH--HHHhhc--cCCcEEEEeC Confidence 455566667888899999999999999999999987655 78888887666655 333221 1236677765 No 298 >PRK11524 putative methyltransferase; Provisional Probab=82.81 E-value=4.1 Score=38.36 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=42.9 Q ss_pred EEEecccCCcCCCCCCCceeEEEEcccccc------CC-----c---hHHHHHHHHHHhccCCCCcEEEEEeccccccCC Q 019282 237 IIVRGEDMDFTKFGSGVVYDLIYASAVFLH------MP-----D---KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRL 302 (343) Q Consensus 237 ~~~~~~~~dl~~~~~~~~fDlIvs~~v~~h------l~-----~---~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~ 302 (343) .++.++..++.....+++||+|++.--+.- .. . .....++.++.++||| ||.+++...... T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~-~G~i~i~~~~~~---- 84 (284) T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKK-QGTMYIMNSTEN---- 84 (284) T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCC-CcEEEEEcCchh---- Confidence 345454444321224568888888543311 00 0 1123588999999999 999998643211 Q ss_pred CHHHHHHHHHhcCCcEEE Q 019282 303 GGEECTKRLTSLGLEYIG 320 (343) Q Consensus 303 ~~~~l~~~L~~aGf~~v~ 320 (343) .. ....+.+.||.... T Consensus 85 -~~-~~~~~~~~~f~~~~ 100 (284) T PRK11524 85 -MP-FIDLYCRKLFTIKS 100 (284) T ss_pred -hh-HHHHHHhcCcceEE Confidence 11 23445567876544 No 299 >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B. Probab=82.71 E-value=4.4 Score=34.63 Aligned_cols=50 Identities=24% Similarity=0.312 Sum_probs=33.8 Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcCh Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDE 215 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~ 215 (343) .++..+++........+| -|||+|=|.|+.=-++.+.++...++|.|-.. T Consensus 13 aQR~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l 62 (160) T PF12692_consen 13 AQRDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRAL 62 (160) T ss_dssp HHHHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS- T ss_pred HHHHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeeec Confidence 366777887777665544 79999999999999999999999999988543 No 300 >COG1565 Uncharacterized conserved protein [Function unknown] Probab=82.47 E-value=3.5 Score=40.26 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=29.5 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHc--------CCCceEEEEcCh Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYL--------NPENFHCLERDE 215 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~--------~~~~~~vvdid~ 215 (343) ...++...++|||.|+|.++..+++.+ ....+..+++++ T Consensus 73 ~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370) T COG1565 73 LGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370) T ss_pred hcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH Confidence 455666789999999999999998865 235566666655 No 301 >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. Probab=81.38 E-value=2 Score=35.53 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=40.3 Q ss_pred CceeEEEEcc-ccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee Q 019282 253 VVYDLIYASA-VFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 253 ~~fDlIvs~~-v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343) ..||+|+... ...--|+-....+|++++++++| ||.+.--. ....++..|.++||++..... T Consensus 49 ~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~-~~~l~Tys--------~a~~Vr~~L~~aGF~v~~~~g 111 (124) T PF05430_consen 49 ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKP-GGTLATYS--------SAGAVRRALQQAGFEVEKVPG 111 (124) T ss_dssp T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEE-EEEEEES----------BHHHHHHHHHCTEEEEEEE- T ss_pred ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCC-CcEEEEee--------chHHHHHHHHHcCCEEEEcCC Confidence 5788888754 22222333345689999999999 88774321 135688999999999876554 No 302 >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] Probab=81.01 E-value=5.7 Score=38.58 Aligned_cols=103 Identities=15% Similarity=0.221 Sum_probs=57.4 Q ss_pred CCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCcee Q 019282 178 HITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343) Q Consensus 178 ~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343) ...++.+|+=+|||+ |.++..+++.++...+.++|.++. ..+++++.............. .............+| T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~--Rl~~A~~~~g~~~~~~~~~~~--~~~~~~~~t~g~g~D 240 (350) T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE--RLELAKEAGGADVVVNPSEDD--AGAEILELTGGRGAD 240 (350) T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH--HHHHHHHhCCCeEeecCcccc--HHHHHHHHhCCCCCC Confidence 344555999999996 666677777777777666666554 444444421110000000000 000011111123689 Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +++-... . ...+..+.++++| ||.+++. T Consensus 241 ~vie~~G-----~---~~~~~~ai~~~r~-gG~v~~v 268 (350) T COG1063 241 VVIEAVG-----S---PPALDQALEALRP-GGTVVVV 268 (350) T ss_pred EEEECCC-----C---HHHHHHHHHHhcC-CCEEEEE Confidence 9875433 1 1278999999999 9999775 No 303 >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... Probab=80.96 E-value=9.8 Score=30.05 Aligned_cols=106 Identities=22% Similarity=0.213 Sum_probs=58.0 Q ss_pred CCcCHHHHHHHHHcCCCc--eEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC--CCCceeEEEEccccc Q 019282 190 CGTLRVGVHFIRYLNPEN--FHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG--SGVVYDLIYASAVFL 265 (343) Q Consensus 190 CGtG~~a~~la~~~~~~~--~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~--~~~~fDlIvs~~v~~ 265 (343) ||+|.++..+++.+...+ +.+++.++.. ....+. .+ ...+.++..+...+. .-...|.|++. T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~--~~~~~~---~~-----~~~i~gd~~~~~~l~~a~i~~a~~vv~~---- 69 (116) T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPER--VEELRE---EG-----VEVIYGDATDPEVLERAGIEKADAVVIL---- 69 (116) T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHH--HHHHHH---TT-----SEEEES-TTSHHHHHHTTGGCESEEEEE---- T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHH--HHHHHh---cc-----cccccccchhhhHHhhcCccccCEEEEc---- Confidence 678889999998775544 5555555533 332222 12 334555433332111 12467777764 Q ss_pred cCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE Q 019282 266 HMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343) Q Consensus 266 hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343) .+++..-..+....+.+.| ...++.... .++..+.|+++|...+ T Consensus 70 -~~~d~~n~~~~~~~r~~~~-~~~ii~~~~--------~~~~~~~l~~~g~d~v 113 (116) T PF02254_consen 70 -TDDDEENLLIALLARELNP-DIRIIARVN--------DPENAELLRQAGADHV 113 (116) T ss_dssp -SSSHHHHHHHHHHHHHHTT-TSEEEEEES--------SHHHHHHHHHTT-SEE T ss_pred -cCCHHHHHHHHHHHHHHCC-CCeEEEEEC--------CHHHHHHHHHCCcCEE Confidence 2344443355666777888 777776542 2445677888887644 No 304 >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] Probab=78.91 E-value=3.6 Score=41.38 Aligned_cols=43 Identities=14% Similarity=0.055 Sum_probs=30.7 Q ss_pred CCCceeEEEEccccccCCchHHH-HHHHH-HHhccCCCCcEEEEEe Q 019282 251 SGVVYDLIYASAVFLHMPDKLVW-VGLER-LASKLRPYDGRIFVSH 294 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~-~~L~~-l~r~LkP~GG~lvi~~ 294 (343) ..+.||+|++.+.+++++....+ .+.+. .++..++ ||.+++.. T Consensus 271 ~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~-g~~lViIe 315 (491) T KOG2539|consen 271 IKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRS-GYFLVIIE 315 (491) T ss_pred cccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCC-CceEEEEe Confidence 45679999999999999775432 23333 4567778 88888763 No 305 >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro Probab=78.86 E-value=9.5 Score=34.19 Aligned_cols=99 Identities=20% Similarity=0.297 Sum_probs=53.1 Q ss_pred cCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC---CCCC Q 019282 177 SHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK---FGSG 252 (343) Q Consensus 177 ~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~---~~~~ 252 (343) ..+.++.+||-.|+|. |..+..+++... ..++.++.+....+..+.. +. . . .+.....+... .... T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g---~~v~~~~~~~~~~~~~~~~---g~-~-~--~~~~~~~~~~~~~~~~~~ 199 (271) T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAG---ARVIVTDRSDEKLELAKEL---GA-D-H--VIDYKEEDLEEELRLTGG 199 (271) T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---CeEEEEcCCHHHHHHHHHh---CC-c-e--eccCCcCCHHHHHHHhcC Confidence 3447889999999986 556666666543 3444445444444333322 11 0 0 11100011100 0123 Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) +.+|+|+... +.. ..+..+.+.|++ +|.++... T Consensus 200 ~~~d~vi~~~-----~~~---~~~~~~~~~l~~-~G~~v~~~ 232 (271) T cd05188 200 GGADVVIDAV-----GGP---ETLAQALRLLRP-GGRIVVVG 232 (271) T ss_pred CCCCEEEECC-----CCH---HHHHHHHHhccc-CCEEEEEc Confidence 5789998642 221 156778899999 99988753 No 306 >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. Probab=78.31 E-value=21 Score=34.04 Aligned_cols=92 Identities=10% Similarity=-0.049 Sum_probs=50.3 Q ss_pred cCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCce Q 019282 177 SHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343) Q Consensus 177 ~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343) ..++++.+||=.|+| .|..+..+++.. +..++.++.+....+.+++.. .. . .+ +..+. ..+.+ T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~---G~~vi~~~~~~~~~~~a~~~G---a~--~--vi-----~~~~~-~~~~~ 224 (329) T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ---GATVHVMTRGAAARRLALALG---AA--S--AG-----GAYDT-PPEPL 224 (329) T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC---CCeEEEEeCChHHHHHHHHhC---Cc--e--ec-----ccccc-Ccccc Confidence 577889999999975 344445555543 333444444444444444432 11 1 11 10101 12357 Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) |+++..... . ..+....+.|++ ||++++. T Consensus 225 d~~i~~~~~-----~---~~~~~~~~~l~~-~G~~v~~ 253 (329) T TIGR02822 225 DAAILFAPA-----G---GLVPPALEALDR-GGVLAVA 253 (329) T ss_pred eEEEECCCc-----H---HHHHHHHHhhCC-CcEEEEE Confidence 876543221 1 267888899999 9999774 No 307 >TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). Probab=77.23 E-value=57 Score=33.34 Aligned_cols=125 Identities=10% Similarity=0.093 Sum_probs=61.4 Q ss_pred HHHHHHHHHhcCC--CCCCeEEEEcCCcCHHHHHHHHHcC--CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEec Q 019282 167 RDVFEFLAEASHI--TPNSHVLEIGCGTLRVGVHFIRYLN--PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRG 241 (343) Q Consensus 167 ~~~~~~l~~~~~l--~~~~rVLDIGCGtG~~a~~la~~~~--~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~ 241 (343) +.+.+.+.+.... .|+..|.|..||+|.+......... ......++.+..+.+...+..... .+..........+ T Consensus 201 ~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~ 280 (501) T TIGR00497 201 QDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINA 280 (501) T ss_pred HHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccC Confidence 4566666554433 2557899999999999876554332 112334444444444444432211 1111111111111 Q ss_pred ccCCcCCCCCCCceeEEEEcccc------------------------ccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 242 EDMDFTKFGSGVVYDLIYASAVF------------------------LHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 242 ~~~dl~~~~~~~~fDlIvs~~v~------------------------~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +...-.++....+||.|+++.-+ .+..+ .-..++..+..+|++ ||+..+. T Consensus 281 dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~-~~~afi~h~~~~L~~-gG~~aiI 354 (501) T TIGR00497 281 DTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSK-ADLAFVLHALYVLGQ-EGTAAIV 354 (501) T ss_pred CcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCch-hhHHHHHHHHHhcCC-CCeEEEE Confidence 11111112123457777765321 11111 223478888999999 9986554 No 308 >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] Probab=77.15 E-value=5.5 Score=39.17 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=35.3 Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHH Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFR 223 (343) Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a 223 (343) +.+.+.......+-..|.|+|.|.|.++..+.-. .++.|.+||.+....+.+ T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~---y~lsV~aIegsq~~~~ra 192 (476) T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLG---YGLSVKAIEGSQRLVERA 192 (476) T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhc---cCceEEEeccchHHHHHH Confidence 3344433334455568999999999999988754 456688888876554444 No 309 >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] Probab=75.77 E-value=11 Score=36.30 Aligned_cols=102 Identities=18% Similarity=0.253 Sum_probs=58.5 Q ss_pred HHHHhcCCCCCCeEEEEc--CCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC-- Q 019282 172 FLAEASHITPNSHVLEIG--CGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT-- 247 (343) Q Consensus 172 ~l~~~~~l~~~~rVLDIG--CGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~-- 247 (343) .+.....++++.+||=.| .|-|.++.+|++.+.. . ++.+..+....+..++.... .+ +.-...++. T Consensus 133 ~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~--~v~~~~s~~k~~~~~~lGAd-----~v--i~y~~~~~~~~ 202 (326) T COG0604 133 ALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-T--VVAVVSSSEKLELLKELGAD-----HV--INYREEDFVEQ 202 (326) T ss_pred HHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-c--EEEEecCHHHHHHHHhcCCC-----EE--EcCCcccHHHH Confidence 344456788899999998 4678888888887653 2 22222222233344433211 11 111112221 Q ss_pred --CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 248 --KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 248 --~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +......+|+|+.. +... .+.+..+.|++ +|+++.. T Consensus 203 v~~~t~g~gvDvv~D~-----vG~~----~~~~~l~~l~~-~G~lv~i 240 (326) T COG0604 203 VRELTGGKGVDVVLDT-----VGGD----TFAASLAALAP-GGRLVSI 240 (326) T ss_pred HHHHcCCCCceEEEEC-----CCHH----HHHHHHHHhcc-CCEEEEE Confidence 11123469999763 4433 67889999999 9999875 No 310 >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. Probab=74.83 E-value=3.5 Score=40.73 Aligned_cols=59 Identities=17% Similarity=0.092 Sum_probs=46.8 Q ss_pred CCcEEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 234 KRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 234 ~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .++.+..+...++..-.+++++|.++....+.++++....+.++++.+.++| ||++++- T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p-gaRV~~R 333 (380) T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP-GARVLWR 333 (380) T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC-CCEEEEe Confidence 3566665543343322247899999999999999999999999999999999 9999875 No 311 >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function. Probab=74.55 E-value=11 Score=36.04 Aligned_cols=116 Identities=14% Similarity=0.015 Sum_probs=63.9 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcC--------------------CCceEEEEcChhHHHHHHHHhcccCC----------- Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLN--------------------PENFHCLERDELSLMAAFRYELPSQG----------- 230 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~--------------------~~~~~vvdid~s~~~~a~a~~~~~~~----------- 230 (343) ..+||-||.|.|.-...++..+. ...++.+|+-........-..-.... T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315) T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315) T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc Confidence 36999999999988877777660 02566777666554443222111111 Q ss_pred --C-CCC--CcEEEecccCCcCCCC-----CCCceeEEEEccccccC---CchHHHHHHHHHHhccCCCCcEEEEEeccc Q 019282 231 --L-LHK--RPIIVRGEDMDFTKFG-----SGVVYDLIYASAVFLHM---PDKLVWVGLERLASKLRPYDGRIFVSHNIK 297 (343) Q Consensus 231 --~-~~~--~~~~~~~~~~dl~~~~-----~~~~fDlIvs~~v~~hl---~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~ 297 (343) . ... .+.|.+.+...+..-. .....++|...+++..+ .....-.+|.++-..++| |-.|+|.+... T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~-GslLLVvDSpG 245 (315) T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP-GSLLLVVDSPG 245 (315) T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC-CcEEEEEcCCC Confidence 0 000 2233433332222110 01245777665555433 223344689999999999 88888875443 Q ss_pred c Q 019282 298 F 298 (343) Q Consensus 298 ~ 298 (343) . T Consensus 246 S 246 (315) T PF11312_consen 246 S 246 (315) T ss_pred C Confidence 3 No 312 >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( Probab=73.56 E-value=22 Score=33.99 Aligned_cols=94 Identities=9% Similarity=0.099 Sum_probs=49.8 Q ss_pred CCCCCCeEEEEcCCc-CHHHHHHHHH-cCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCce Q 019282 178 HITPNSHVLEIGCGT-LRVGVHFIRY-LNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343) Q Consensus 178 ~l~~~~rVLDIGCGt-G~~a~~la~~-~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343) .++++.+||=+|||. |.++..+++. .....+.+++.+.. ..+.+++ .+. .... .++. ....+ T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~--k~~~a~~---~~~----~~~~----~~~~---~~~g~ 223 (341) T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQE--KLDLFSF---ADE----TYLI----DDIP---EDLAV 223 (341) T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHh--HHHHHhh---cCc----eeeh----hhhh---hccCC Confidence 457789999999864 3333455554 33345555665543 3333332 111 0001 0111 11247 Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) |+|+-.- +.......+....++|++ ||++++. T Consensus 224 d~viD~~-----G~~~~~~~~~~~~~~l~~-~G~iv~~ 255 (341) T cd08237 224 DHAFECV-----GGRGSQSAINQIIDYIRP-QGTIGLM 255 (341) T ss_pred cEEEECC-----CCCccHHHHHHHHHhCcC-CcEEEEE Confidence 8887422 211112268889999999 9998764 No 313 >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. Probab=72.48 E-value=30 Score=32.11 Aligned_cols=126 Identities=17% Similarity=0.157 Sum_probs=60.3 Q ss_pred CCeEEEEcCCcCHHHHHHHHHc-----CCCceEEEEcCh-------------------------hHHHHHHHHhcccCCC Q 019282 182 NSHVLEIGCGTLRVGVHFIRYL-----NPENFHCLERDE-------------------------LSLMAAFRYELPSQGL 231 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~-----~~~~~~vvdid~-------------------------s~~~~a~a~~~~~~~~ 231 (343) ...|+|+||-.|..+..++..+ ....+++.|.=. ........+.+...++ T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248) T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248) T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC Confidence 3579999999998876654432 223455544211 0011111222333455 Q ss_pred CCCCcEEEecccCC-cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHH Q 019282 232 LHKRPIIVRGEDMD-FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTK 309 (343) Q Consensus 232 ~~~~~~~~~~~~~d-l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~ 309 (343) ...++.++.|.-.+ +++. +.+.+-++..-. .+- ......|+.++..|.| ||++++-+ +.. -+ ...+.+ T Consensus 155 ~~~~v~~vkG~F~dTLp~~-p~~~IAll~lD~---DlY-esT~~aLe~lyprl~~-GGiIi~DD---Y~~-~gcr~Avde 224 (248) T PF05711_consen 155 LDDNVRFVKGWFPDTLPDA-PIERIALLHLDC---DLY-ESTKDALEFLYPRLSP-GGIIIFDD---YGH-PGCRKAVDE 224 (248) T ss_dssp SSTTEEEEES-HHHHCCC--TT--EEEEEE------SH-HHHHHHHHHHGGGEEE-EEEEEESS---TTT-HHHHHHHHH T ss_pred CcccEEEECCcchhhhccC-CCccEEEEEEec---cch-HHHHHHHHHHHhhcCC-CeEEEEeC---CCC-hHHHHHHHH Confidence 55677888772211 2222 223332222211 111 1234589999999999 99887753 111 12 566677 Q ss_pred HHHhcCCc Q 019282 310 RLTSLGLE 317 (343) Q Consensus 310 ~L~~aGf~ 317 (343) .+++.|.+ T Consensus 225 F~~~~gi~ 232 (248) T PF05711_consen 225 FRAEHGIT 232 (248) T ss_dssp HHHHTT-- T ss_pred HHHHcCCC Confidence 77888875 No 314 >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] Probab=72.38 E-value=78 Score=30.13 Aligned_cols=132 Identities=17% Similarity=0.126 Sum_probs=84.2 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhcccCCCCC-CCcEEEecccCCcCC--CC---C--- Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPSQGLLH-KRPIIVRGEDMDFTK--FG---S--- 251 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~~~~~~-~~~~~~~~~~~dl~~--~~---~--- 251 (343) ...|+-+|||==.-+. .++. .+.++.++|....+.-..+.+.+.+... .....+.. |+.+ +. . T Consensus 93 ~~qvViLgaGLDTRay----Rl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~---Dl~~~dw~~~L~~~G 165 (297) T COG3315 93 IRQVVILGAGLDTRAY----RLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAV---DLREDDWPQALAAAG 165 (297) T ss_pred ccEEEEecccccccee----ecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEec---cccccchHHHHHhcC Confidence 4679999998532211 2222 3688999999877766555555444322 13334432 4431 11 1 Q ss_pred --CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec--ccc------------------------ccCCC Q 019282 252 --GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN--IKF------------------------CSRLG 303 (343) Q Consensus 252 --~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~--~~~------------------------~~~~~ 303 (343) ...-=++++-+++.+++......+|..+...+.| |-.++.... ... +.... T Consensus 166 ~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~-gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 244 (297) T COG3315 166 FDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP-GSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDD 244 (297) T ss_pred CCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCC-CceEEEeccccHHHHhcccchhhhhhccccccccccceeccCC Confidence 2344578888999999999999999999999999 777765421 000 00011 Q ss_pred HHHHHHHHHhcCCcEEEe Q 019282 304 GEECTKRLTSLGLEYIGK 321 (343) Q Consensus 304 ~~~l~~~L~~aGf~~v~~ 321 (343) ..++..++.+.||..... T Consensus 245 ~~e~~~~l~~~g~~~~~~ 262 (297) T COG3315 245 PAEIETWLAERGWRSTLN 262 (297) T ss_pred HHHHHHHHHhcCEEEEec Confidence 788999999999987654 No 315 >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... Probab=72.37 E-value=7.2 Score=34.37 Aligned_cols=51 Identities=24% Similarity=0.203 Sum_probs=30.8 Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHH Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMA 220 (343) Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~ 220 (343) ..+++.+... .-+++..|||-=||+|..+....+ ++ ..+.++++++..... T Consensus 178 ~~l~~~lI~~-~t~~gdiVlDpF~GSGTT~~aa~~-l~-R~~ig~E~~~~y~~~ 228 (231) T PF01555_consen 178 VELIERLIKA-STNPGDIVLDPFAGSGTTAVAAEE-LG-RRYIGIEIDEEYCEI 228 (231) T ss_dssp HHHHHHHHHH-HS-TT-EEEETT-TTTHHHHHHHH-TT--EEEEEESSHHHHHH T ss_pred HHHHHHHHHh-hhccceeeehhhhccChHHHHHHH-cC-CeEEEEeCCHHHHHH Confidence 3455666544 346788999999999999886665 22 345566666554443 No 316 >cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai Probab=72.05 E-value=44 Score=31.93 Aligned_cols=97 Identities=16% Similarity=0.106 Sum_probs=51.2 Q ss_pred CCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcC-hhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCcee Q 019282 179 ITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERD-ELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343) Q Consensus 179 l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid-~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343) ..++.+||=+|+|. |.++..+++.... .+.+++.+ ++....+.+++.. . . .+.....+..+....+.+| T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~G---a---~--~v~~~~~~~~~~~~~~~~d 240 (355) T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELG---A---T--YVNSSKTPVAEVKLVGEFD 240 (355) T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcC---C---E--EecCCccchhhhhhcCCCC Confidence 56788999999863 5556666665433 34444431 1333444444321 1 0 1111111111101124688 Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +|+-.- +... .+.+..+.|++ ||++++. T Consensus 241 ~vid~~-----g~~~---~~~~~~~~l~~-~G~~v~~ 268 (355) T cd08230 241 LIIEAT-----GVPP---LAFEALPALAP-NGVVILF 268 (355) T ss_pred EEEECc-----CCHH---HHHHHHHHccC-CcEEEEE Confidence 887642 2221 57888999999 9998764 No 317 >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. Probab=71.99 E-value=86 Score=29.25 Aligned_cols=125 Identities=11% Similarity=0.070 Sum_probs=62.7 Q ss_pred eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEccc Q 019282 184 HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAV 263 (343) Q Consensus 184 rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v 263 (343) +|+|+-||.|.+...+... +-..+..+|+++.....- +.+ ... . ...++..++........+|+|+...- T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~--~~N----~~~-~--~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275) T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETY--EAN----FPN-K--LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275) T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHH--HHh----CCC-C--CccCccccCchhhcCCCCCEEEeCCC Confidence 6999999999998888763 223344566666544332 221 111 1 12221122221110346899998643 Q ss_pred cccC---------CchH--HHHHHHHHHhccCCCCcEEEEEeccccccC---CCHHHHHHHHHhcCCcEEE Q 019282 264 FLHM---------PDKL--VWVGLERLASKLRPYDGRIFVSHNIKFCSR---LGGEECTKRLTSLGLEYIG 320 (343) Q Consensus 264 ~~hl---------~~~~--~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~---~~~~~l~~~L~~aGf~~v~ 320 (343) ...+ .++. ..-.+-++.+.++| -.+++..-..+... ..-+.+.+.|++.||.+.. T Consensus 72 Cq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~ 140 (275) T cd00315 72 CQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKP--KYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYW 140 (275) T ss_pred ChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCC--CEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEE Confidence 3211 1111 11123344555677 45555422222221 1156778888999997643 No 318 >PF14740 DUF4471: Domain of unknown function (DUF4471) Probab=71.73 E-value=6.4 Score=37.36 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=41.2 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-------HHHHHHHHHhcCCcEE Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-------GEECTKRLTSLGLEYI 319 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-------~~~l~~~L~~aGf~~v 319 (343) .+.||+|+....+-|+-.+. +.++++| ||+|++.. ..|...+. .+.+.++++.+||+.+ T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-------l~~~~a~-~A~LvvEt-aKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289) T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-------LFQALAP-DAVLVVET-AKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289) T ss_pred cCCCCEEEEhhhhHhhcchH-------HHHHhCC-CCEEEEEc-chhheeCCHHHHHHHHHHHHHHHHHCCCccc Confidence 56799999865444443322 6778899 99988874 24544444 6778888999999754 No 319 >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. Probab=70.95 E-value=22 Score=33.50 Aligned_cols=99 Identities=12% Similarity=0.115 Sum_probs=55.2 Q ss_pred HhcCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC-CcCC--- Q 019282 175 EASHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM-DFTK--- 248 (343) Q Consensus 175 ~~~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~-dl~~--- 248 (343) +...+.++.+||=.|. |.|..+..+++.. +..++.++.+.......++. |. + . .+..... ++.. T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~---G~~Vi~~~~s~~~~~~~~~l---Ga-~-~--vi~~~~~~~~~~~~~ 201 (325) T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLK---GCKVVGAAGSDEKVAYLKKL---GF-D-V--AFNYKTVKSLEETLK 201 (325) T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHc---CC-C-E--EEeccccccHHHHHH Confidence 4457888999998884 5777777777764 33455444444444444332 22 1 1 1111110 1110 Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ....+.+|+|+-. ++.. .+....++|++ ||+++.. T Consensus 202 ~~~~~gvdvv~d~-----~G~~----~~~~~~~~l~~-~G~iv~~ 236 (325) T TIGR02825 202 KASPDGYDCYFDN-----VGGE----FSNTVIGQMKK-FGRIAIC 236 (325) T ss_pred HhCCCCeEEEEEC-----CCHH----HHHHHHHHhCc-CcEEEEe Confidence 0012468888752 3322 45788999999 9999864 No 320 >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Probab=69.24 E-value=20 Score=37.56 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=47.7 Q ss_pred eEEEEcCCcCHHHHHHHHHcCCC--ceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC--CCCceeEEE Q 019282 184 HVLEIGCGTLRVGVHFIRYLNPE--NFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG--SGVVYDLIY 259 (343) Q Consensus 184 rVLDIGCGtG~~a~~la~~~~~~--~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~--~~~~fDlIv 259 (343) +|+= ||-|+++..+++.+... .+.++|.|+ ...+..++ .+. .+ +.+|..+..-+. .-+..|.++ T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~--~~v~~~~~---~g~---~v--~~GDat~~~~L~~agi~~A~~vv 469 (601) T PRK03659 402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDI--SAVNLMRK---YGY---KV--YYGDATQLELLRAAGAEKAEAIV 469 (601) T ss_pred CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCH--HHHHHHHh---CCC---eE--EEeeCCCHHHHHhcCCccCCEEE Confidence 4554 56677888888876544 455555555 44443332 121 23 333333321111 124677777 Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +. .++++....+-...|.+.| ...++.. T Consensus 470 ~~-----~~d~~~n~~i~~~~r~~~p-~~~IiaR 497 (601) T PRK03659 470 IT-----CNEPEDTMKIVELCQQHFP-HLHILAR 497 (601) T ss_pred EE-----eCCHHHHHHHHHHHHHHCC-CCeEEEE Confidence 63 3444333345555667788 7777665 No 321 >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. Probab=69.05 E-value=16 Score=35.18 Aligned_cols=100 Identities=13% Similarity=0.141 Sum_probs=52.5 Q ss_pred hcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCCC Q 019282 176 ASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKFG 250 (343) Q Consensus 176 ~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~~ 250 (343) ...+.++.+||=.|||. |..+..+++..+... ++.++.+....+.+++. +. + . .+.....+. .... T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~--Vi~~~~~~~~~~~~~~~---Ga-~-~--~i~~~~~~~~~~i~~~~ 241 (358) T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASK--IIAVDIDDRKLEWAREF---GA-T-H--TVNSSGTDPVEAIRALT 241 (358) T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe--EEEEcCCHHHHHHHHHc---CC-c-e--EEcCCCcCHHHHHHHHh Confidence 35678899999998753 445555566543222 44444444444444432 21 1 1 111111111 1111 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ....+|+|+-. .+... .+....+.+++ ||++++. T Consensus 242 ~~~g~d~vid~-----~g~~~---~~~~~~~~~~~-~G~iv~~ 275 (358) T TIGR03451 242 GGFGADVVIDA-----VGRPE---TYKQAFYARDL-AGTVVLV 275 (358) T ss_pred CCCCCCEEEEC-----CCCHH---HHHHHHHHhcc-CCEEEEE Confidence 12358888752 33221 56778889999 9999864 No 322 >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional Probab=68.22 E-value=93 Score=30.72 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=60.3 Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343) Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343) +.+++.+.+. .+. .+||=|+=..|.++..++.. +.+.+ -|.-....+.+......++....+... +. T Consensus 33 e~ll~~~~~~-~~~--~~~~i~nd~fGal~~~l~~~----~~~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~-----~~ 99 (378) T PRK15001 33 EYLLQQLDDT-EIR--GPVLILNDAFGALSCALAEH----KPYSI-GDSYISELATRENLRLNGIDESSVKFL-----DS 99 (378) T ss_pred HHHHHHHhhc-ccC--CCEEEEcCchhHHHHHHHhC----CCCee-ehHHHHHHHHHHHHHHcCCCcccceee-----cc Confidence 3345555432 122 38999999999999999852 21222 233333333333333334433223333 12 Q ss_pred CCCCCCCceeEEEEccccccCCc--hHHHHHHHHHHhccCCCCcEEEEEec Q 019282 247 TKFGSGVVYDLIYASAVFLHMPD--KLVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~--~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) .+. ..+.+|+|+.. +|. ......|..+..+|.| |+.+++... T Consensus 100 ~~~-~~~~~d~vl~~-----~PK~~~~l~~~l~~l~~~l~~-~~~ii~g~~ 143 (378) T PRK15001 100 TAD-YPQQPGVVLIK-----VPKTLALLEQQLRALRKVVTS-DTRIIAGAK 143 (378) T ss_pred ccc-ccCCCCEEEEE-----eCCCHHHHHHHHHHHHhhCCC-CCEEEEEEe Confidence 211 23568988773 333 2334478889999999 999876543 No 323 >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at Probab=67.06 E-value=18 Score=34.20 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=50.2 Q ss_pred hcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC---cCCCCC Q 019282 176 ASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD---FTKFGS 251 (343) Q Consensus 176 ~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d---l~~~~~ 251 (343) ...+.++.+||=+|+| .|..+..+++..+...+.+ ++.+......+++.. . . ..+.....+ +.+... T Consensus 158 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~--~~~~~~~~~~~~~~g---a-~---~~i~~~~~~~~~~~~~~~ 228 (339) T cd08239 158 RVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIG--VDPSPERLELAKALG---A-D---FVINSGQDDVQEIRELTS 228 (339) T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHhC---C-C---EEEcCCcchHHHHHHHhC Confidence 3567789999999875 2333344455443222444 444444444443321 1 0 111111111 111112 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ...+|+|+-. .+... .+....+.|++ +|++++. T Consensus 229 ~~~~d~vid~-----~g~~~---~~~~~~~~l~~-~G~~v~~ 261 (339) T cd08239 229 GAGADVAIEC-----SGNTA---ARRLALEAVRP-WGRLVLV 261 (339) T ss_pred CCCCCEEEEC-----CCCHH---HHHHHHHHhhc-CCEEEEE Confidence 3368988753 22221 45677889999 9999764 No 324 >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, Probab=66.87 E-value=17 Score=34.42 Aligned_cols=99 Identities=17% Similarity=0.208 Sum_probs=54.9 Q ss_pred hcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC----cCCCC Q 019282 176 ASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD----FTKFG 250 (343) Q Consensus 176 ~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d----l~~~~ 250 (343) ...+.++.+||-.|+|. |..+..+++.. ++.++.+..+.......++. +. + ..+.....+ +.... T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~---g~~v~~~~~s~~~~~~~~~~---g~-~---~v~~~~~~~~~~~l~~~~ 223 (337) T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKAR---GARVIVVDIDDERLEFAREL---GA-D---DTINVGDEDVAARLRELT 223 (337) T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc---CCeEEEECCCHHHHHHHHHh---CC-C---EEecCcccCHHHHHHHHh Confidence 45778889999998764 66666677654 44455554444444443322 11 0 111111111 11111 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ....+|+|+... ... ..+..+.+.|++ +|+++.. T Consensus 224 ~~~~vd~vld~~-----g~~---~~~~~~~~~l~~-~G~~i~~ 257 (337) T cd08261 224 DGEGADVVIDAT-----GNP---ASMEEAVELVAH-GGRVVLV 257 (337) T ss_pred CCCCCCEEEECC-----CCH---HHHHHHHHHHhc-CCEEEEE Confidence 234589987642 111 157888999999 9998754 No 325 >cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai Probab=66.47 E-value=62 Score=30.43 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=50.4 Q ss_pred CCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC-CCCceeEE Q 019282 181 PNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG-SGVVYDLI 258 (343) Q Consensus 181 ~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~fDlI 258 (343) ++.+||-.|||. |..+..+++..+.. .++.++.+.......++. +. + .++.....++.... ..+.+|+| T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~--~v~~~~~s~~~~~~~~~~---g~-~---~vi~~~~~~~~~~~~~~~~vd~v 235 (339) T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAA--EIVATDLADAPLAVARAM---GA-D---ETVNLARDPLAAYAADKGDFDVV 235 (339) T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHc---CC-C---EEEcCCchhhhhhhccCCCccEE Confidence 788999998875 66666666654322 344444444444333332 11 1 11111111111111 12358998 Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +..... . ..++.+.+.|++ +|+++.. T Consensus 236 ld~~g~-----~---~~~~~~~~~L~~-~G~~v~~ 261 (339) T cd08232 236 FEASGA-----P---AALASALRVVRP-GGTVVQV 261 (339) T ss_pred EECCCC-----H---HHHHHHHHHHhc-CCEEEEE Confidence 864321 1 157788999999 9998754 No 326 >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Probab=66.33 E-value=13 Score=34.34 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=54.5 Q ss_pred CeEEEEcCCcCHHHHHHHHHcCC----C---ceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC------ Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNP----E---NFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF------ 249 (343) Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~----~---~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~------ 249 (343) .|++|+..-.|.++..+.+.+-. . .-.++.+|..++ .+...+..+++ |+... T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M------------aPI~GV~qlq~---DIT~~stae~I 107 (294) T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM------------APIEGVIQLQG---DITSASTAEAI 107 (294) T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC------------CccCceEEeec---ccCCHhHHHHH Confidence 58999999999999999886622 1 111344443211 12223344444 22211 Q ss_pred ---CCCCceeEEEEccc-----cccCCch----HHHHHHHHHHhccCCCCcEEEE Q 019282 250 ---GSGVVYDLIYASAV-----FLHMPDK----LVWVGLERLASKLRPYDGRIFV 292 (343) Q Consensus 250 ---~~~~~fDlIvs~~v-----~~hl~~~----~~~~~L~~l~r~LkP~GG~lvi 292 (343) ...++-|+|+|-.. +|.+.+. -+...|.-...+||| ||.|+- T Consensus 108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~-Gg~FVa 161 (294) T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP-GGSFVA 161 (294) T ss_pred HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC-CCeeeh Confidence 12458899999654 4444332 223456667789999 999974 No 327 >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] Probab=65.34 E-value=30 Score=35.61 Aligned_cols=123 Identities=14% Similarity=0.122 Sum_probs=70.2 Q ss_pred chHHHHHHHHHhcCCCC---CCeEEEEcCCcCHHHHHHHHHc--CCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEE Q 019282 165 GGRDVFEFLAEASHITP---NSHVLEIGCGTLRVGVHFIRYL--NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIV 239 (343) Q Consensus 165 ~~~~~~~~l~~~~~l~~---~~rVLDIGCGtG~~a~~la~~~--~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~ 239 (343) .++.++..|.++..-.. -..|+=+|.|-|=+.....+.. ...++....++..+........+.-+.. ++++.++ T Consensus 348 Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-~~~Vtii 426 (649) T KOG0822|consen 348 YQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-DNRVTII 426 (649) T ss_pred HHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-cCeeEEE Confidence 35667777766533222 3468888999998776655432 1134555555554443333222222222 2366666 Q ss_pred ecccCCcCCCCC-CCceeEEEEccccccCCch-HHHHHHHHHHhccCCCCcEEEEE Q 019282 240 RGEDMDFTKFGS-GVVYDLIYASAVFLHMPDK-LVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 240 ~~~~~dl~~~~~-~~~fDlIvs~~v~~hl~~~-~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .. |+..+.+ ..+.|++++ ..+.-+++. --++-|.-+-+.||| +|..+-. T Consensus 427 ~~---DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkp-dgIsIP~ 477 (649) T KOG0822|consen 427 SS---DMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKP-DGISIPS 477 (649) T ss_pred ec---cccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCC-CceEccc Confidence 55 5555554 378898876 333344332 223468889999999 9876543 No 328 >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd Probab=65.04 E-value=25 Score=34.00 Aligned_cols=100 Identities=16% Similarity=0.096 Sum_probs=52.3 Q ss_pred HhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCC Q 019282 175 EASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKF 249 (343) Q Consensus 175 ~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~ 249 (343) +...+.++.+||=.|+|. |.++..+++......+.++ +.+....+.+++.. . . ..+.....++ ... T Consensus 185 ~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~--~~~~~r~~~a~~~G---a---~-~~i~~~~~~~~~~i~~~ 255 (371) T cd08281 185 NTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAV--DLNEDKLALARELG---A---T-ATVNAGDPNAVEQVREL 255 (371) T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEE--cCCHHHHHHHHHcC---C---c-eEeCCCchhHHHHHHHH Confidence 345678889999998752 4444555554432234444 44444444444322 1 0 1111111111 111 Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) . .+.+|+|+-. .+.. ..+....+.|++ ||++++. T Consensus 256 ~-~~g~d~vid~-----~G~~---~~~~~~~~~l~~-~G~iv~~ 289 (371) T cd08281 256 T-GGGVDYAFEM-----AGSV---PALETAYEITRR-GGTTVTA 289 (371) T ss_pred h-CCCCCEEEEC-----CCCh---HHHHHHHHHHhc-CCEEEEE Confidence 1 2358888753 2221 157778899999 9998764 No 329 >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA:S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A. Probab=64.58 E-value=14 Score=36.38 Aligned_cols=103 Identities=13% Similarity=0.089 Sum_probs=61.2 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343) .+.+|||.=+|+|.=++..+..++. ..++.-|+++........ +.+ .++..+.+.....++..+.. .....||+| T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~--N~~~N~~~~~~~~v~~~DAn~ll~-~~~~~fD~I 125 (377) T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKR--NLELNGLEDERIEVSNMDANVLLY-SRQERFDVI 125 (377) T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHH--HHHHCT-SGCCEEEEES-HHHHHC-HSTT-EEEE T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHH--hHhhccccCceEEEehhhHHHHhh-hccccCCEE Confidence 4568999999999999999988543 556677888776555433 222 33333234444332222221 135789999 Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) =.- =++.+.- +|....+.++. ||.|.++ T Consensus 126 DlD----PfGSp~p--fldsA~~~v~~-gGll~vT 153 (377) T PF02005_consen 126 DLD----PFGSPAP--FLDSALQAVKD-GGLLCVT 153 (377) T ss_dssp EE------SS--HH--HHHHHHHHEEE-EEEEEEE T ss_pred EeC----CCCCccH--hHHHHHHHhhc-CCEEEEe Confidence 442 1233333 89999999999 9999998 No 330 >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast Probab=63.42 E-value=32 Score=32.52 Aligned_cols=100 Identities=20% Similarity=0.290 Sum_probs=52.4 Q ss_pred hcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc---CCcCCCCC Q 019282 176 ASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED---MDFTKFGS 251 (343) Q Consensus 176 ~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~---~dl~~~~~ 251 (343) ...+.++.+||-.|+|. |..+..+++..+... ++.++.+.......... +. ...+.... ..+..... T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~--v~~~~~~~~~~~~l~~~---g~----~~~~~~~~~~~~~~~~~~~ 224 (343) T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKR--VIAVDIDDEKLAVAREL---GA----DDTINPKEEDVEKVRELTE 224 (343) T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE--EEEEcCCHHHHHHHHHc---CC----CEEecCccccHHHHHHHhC Confidence 35677888999998765 666666666543222 44444333333333221 11 01111100 01111112 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ...+|+|+.. .+.. ..+..+.++|++ +|+++.. T Consensus 225 ~~~~d~vld~-----~g~~---~~~~~~~~~l~~-~G~~v~~ 257 (343) T cd08236 225 GRGADLVIEA-----AGSP---ATIEQALALARP-GGKVVLV 257 (343) T ss_pred CCCCCEEEEC-----CCCH---HHHHHHHHHhhc-CCEEEEE Confidence 3358998754 2221 157888999999 9998754 No 331 >PHA01634 hypothetical protein Probab=63.08 E-value=16 Score=30.53 Aligned_cols=42 Identities=7% Similarity=-0.020 Sum_probs=30.1 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHh Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYE 225 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~ 225 (343) .+.+|+|||.+-|..+++++-.- .-.++.+++.+......++ T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G---AK~Vva~E~~~kl~k~~ee 69 (156) T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG---ASFVVQYEKEEKLRKKWEE 69 (156) T ss_pred cCCEEEEecCCccchhhHHhhcC---ccEEEEeccCHHHHHHHHH Confidence 37799999999999999997632 2246667776665555444 No 332 >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Probab=62.77 E-value=33 Score=31.65 Aligned_cols=101 Identities=10% Similarity=0.005 Sum_probs=50.2 Q ss_pred cCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCce Q 019282 177 SHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343) Q Consensus 177 ~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343) ....++.+||=+|+| .|..+..+++......+.++ +.+....+.++++......+ .......+........+ T Consensus 116 ~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i~-----~~~~~~~~~~~~~~~g~ 188 (280) T TIGR03366 116 AGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALAE-----PEVLAERQGGLQNGRGV 188 (280) T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEecC-----chhhHHHHHHHhCCCCC Confidence 344578899999875 33344445555433224444 44444444444432111100 00000011111112358 Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) |+|+-. .+.. ..++...+.|+| +|++++. T Consensus 189 d~vid~-----~G~~---~~~~~~~~~l~~-~G~iv~~ 217 (280) T TIGR03366 189 DVALEF-----SGAT---AAVRACLESLDV-GGTAVLA 217 (280) T ss_pred CEEEEC-----CCCh---HHHHHHHHHhcC-CCEEEEe Confidence 888653 2222 157888999999 9999865 No 333 >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase. Probab=61.70 E-value=47 Score=31.20 Aligned_cols=86 Identities=17% Similarity=0.128 Sum_probs=46.5 Q ss_pred CCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE Q 019282 181 PNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343) Q Consensus 181 ~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343) ++.+||=+||| .|.++..+++..+...+.+++.+. ...+.+.. . . .+ +..+. ....+|+|+ T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~--~rl~~a~~-----~---~--~i-----~~~~~-~~~g~Dvvi 205 (308) T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNP--RRRDGATG-----Y---E--VL-----DPEKD-PRRDYRAIY 205 (308) T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH--HHHHhhhh-----c---c--cc-----Chhhc-cCCCCCEEE Confidence 56789988876 455666666655433333444333 22222211 0 0 01 10000 124588887 Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) -. .+.. ..+..+.+.|+| ||++++. T Consensus 206 d~-----~G~~---~~~~~~~~~l~~-~G~iv~~ 230 (308) T TIGR01202 206 DA-----SGDP---SLIDTLVRRLAK-GGEIVLA 230 (308) T ss_pred EC-----CCCH---HHHHHHHHhhhc-CcEEEEE Confidence 53 3322 257888999999 9999864 No 334 >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac Probab=61.29 E-value=30 Score=32.32 Aligned_cols=98 Identities=12% Similarity=0.081 Sum_probs=54.8 Q ss_pred HhcCCCCCCeEEEEc--CCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC----C Q 019282 175 EASHITPNSHVLEIG--CGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT----K 248 (343) Q Consensus 175 ~~~~l~~~~rVLDIG--CGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~----~ 248 (343) +...+.++.+||=.| .|.|..+..+++..+ +.++.++.+.......++. |. . ..+.....++. . T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G---~~vi~~~~s~~~~~~l~~~---Ga---~-~vi~~~~~~~~~~v~~ 206 (329) T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKG---CKVIGCAGSDDKVAWLKEL---GF---D-AVFNYKTVSLEEALKE 206 (329) T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHc---CC---C-EEEeCCCccHHHHHHH Confidence 345678899999887 356777777777643 3444444444444433332 22 1 11211112221 1 Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) . ....+|+|+-. ++.. .+....+.|++ +|+++.. T Consensus 207 ~-~~~gvd~vld~-----~g~~----~~~~~~~~l~~-~G~iv~~ 240 (329) T cd08294 207 A-APDGIDCYFDN-----VGGE----FSSTVLSHMND-FGRVAVC 240 (329) T ss_pred H-CCCCcEEEEEC-----CCHH----HHHHHHHhhcc-CCEEEEE Confidence 1 12458888753 2221 57889999999 9998754 No 335 >PLN03154 putative allyl alcohol dehydrogenase; Provisional Probab=60.80 E-value=76 Score=30.42 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=55.5 Q ss_pred HhcCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHH-hcccCCCCCCCcEEEeccc-CCc---- Q 019282 175 EASHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRY-ELPSQGLLHKRPIIVRGED-MDF---- 246 (343) Q Consensus 175 ~~~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~-~~~~~~~~~~~~~~~~~~~-~dl---- 246 (343) +...+.++.+||=.|+ |.|..+..+++.. +..++.++.+....+..+ +. |. . ..+.... .++ T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~---G~~Vi~~~~~~~k~~~~~~~l---Ga---~-~vi~~~~~~~~~~~i 221 (348) T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLH---GCYVVGSAGSSQKVDLLKNKL---GF---D-EAFNYKEEPDLDAAL 221 (348) T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHHhc---CC---C-EEEECCCcccHHHHH Confidence 3456788999999987 4777878788764 334555554444444332 21 21 1 1111110 011 Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ... ..+.+|+|+-. ++.. .+....++|++ ||++++. T Consensus 222 ~~~-~~~gvD~v~d~-----vG~~----~~~~~~~~l~~-~G~iv~~ 257 (348) T PLN03154 222 KRY-FPEGIDIYFDN-----VGGD----MLDAALLNMKI-HGRIAVC 257 (348) T ss_pred HHH-CCCCcEEEEEC-----CCHH----HHHHHHHHhcc-CCEEEEE Confidence 111 12358888753 3321 57888999999 9999764 No 336 >cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall Probab=59.64 E-value=27 Score=32.93 Aligned_cols=99 Identities=21% Similarity=0.239 Sum_probs=51.8 Q ss_pred cCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCCCC Q 019282 177 SHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKFGS 251 (343) Q Consensus 177 ~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~~~ 251 (343) ..++++.+||-.|+| .|..+..+++..+...+.+++.+ .......++. +. . ..+.....++ ..... T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~--~~~~~~~~~~---g~---~-~vi~~~~~~~~~~i~~~~~ 233 (347) T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSN--PERLDLAKEA---GA---T-DIINPKNGDIVEQILELTG 233 (347) T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC--HHHHHHHHHh---CC---c-EEEcCCcchHHHHHHHHcC Confidence 457788899998775 36666666775542234444333 3333333322 11 0 1111111111 11112 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .+.+|+|+... +.. ..+.+..+.|++ +|+++.. T Consensus 234 ~~~~d~vld~~-----g~~---~~~~~~~~~l~~-~G~~v~~ 266 (347) T cd05278 234 GRGVDCVIEAV-----GFE---ETFEQAVKVVRP-GGTIANV 266 (347) T ss_pred CCCCcEEEEcc-----CCH---HHHHHHHHHhhc-CCEEEEE Confidence 35689887532 111 267888899999 9998753 No 337 >KOG4174 consensus Uncharacterized conserved protein [Function unknown] Probab=59.23 E-value=71 Score=29.86 Aligned_cols=148 Identities=17% Similarity=0.191 Sum_probs=87.4 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcC--CCceEEEEcChhHHHHHHHH--------hcccCCCCCCCcEEEecccCCc Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLN--PENFHCLERDELSLMAAFRY--------ELPSQGLLHKRPIIVRGEDMDF 246 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~--~~~~~vvdid~s~~~~a~a~--------~~~~~~~~~~~~~~~~~~~~dl 246 (343) .+.....+||.+|=|.=.++..++..+. ...++.+.+|.......+.. .+...|. .++..-+...+ T Consensus 52 ~~~s~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~----~I~h~Vdv~sl 127 (282) T KOG4174|consen 52 VPYSKKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGG----TILHGVDVTSL 127 (282) T ss_pred eeccccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCC----ceEecccceeE Confidence 3455677899998888778888888765 34566777776542111110 0011111 11111111111 Q ss_pred C---CCCCCCceeEEEEccccccCCc---------------hHHHHHHHHHHhccC-CCCcEEEEEeccccccCCCHHHH Q 019282 247 T---KFGSGVVYDLIYASAVFLHMPD---------------KLVWVGLERLASKLR-PYDGRIFVSHNIKFCSRLGGEEC 307 (343) Q Consensus 247 ~---~~~~~~~fDlIvs~~v~~hl~~---------------~~~~~~L~~l~r~Lk-P~GG~lvi~~~~~~~~~~~~~~l 307 (343) . ++ --+.||-||.+ |.|-+. .-...+|+.+..+|+ . .|.+.++.. -...+.+-.+ T Consensus 128 ~~~~~~-~~~~~d~IiFN--FPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~e-dGeI~itlk--~t~P~~~W~i 201 (282) T KOG4174|consen 128 KFHADL-RLQRYDNIIFN--FPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDE-DGEIHITLK--TTYPFNPWNI 201 (282) T ss_pred Eecccc-cccccceEEEc--CCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhc-CCcEEEEec--cCCCCchhhh Confidence 1 12 24689999988 444332 123467888999999 7 899999842 1122335667 Q ss_pred HHHHHhcCCcEEEeeeccccccchhHH Q 019282 308 TKRLTSLGLEYIGKKTHDSLLFNHYEI 334 (343) Q Consensus 308 ~~~L~~aGf~~v~~~~~~~l~~~~~e~ 334 (343) ..+..+.|++.+....+...-+|.|.. T Consensus 202 k~Lak~~gl~L~~~skF~~~~~Pgy~~ 228 (282) T KOG4174|consen 202 KFLAKEFGLTLLEDSKFEKSNYPGYSN 228 (282) T ss_pred hHhhhhccccchhcccchhhcCCCccc Confidence 777788899888877777666666653 No 338 >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... Probab=59.23 E-value=34 Score=29.08 Aligned_cols=114 Identities=21% Similarity=0.232 Sum_probs=57.4 Q ss_pred EEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEcccc Q 019282 185 VLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVF 264 (343) Q Consensus 185 VLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~ 264 (343) |-=||+ |.++..+++.+...++.++..|.+........+ .+ .... .+..+. ....|+|+.. T Consensus 4 Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~---~g-----~~~~----~s~~e~--~~~~dvvi~~--- 64 (163) T PF03446_consen 4 IGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE---AG-----AEVA----DSPAEA--AEQADVVILC--- 64 (163) T ss_dssp EEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH---TT-----EEEE----SSHHHH--HHHBSEEEE---- T ss_pred EEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH---hh-----hhhh----hhhhhH--hhcccceEee--- Confidence 444555 567777877765455554444444332221111 11 1111 122211 2345888773 Q ss_pred ccCCc-hHHHHHHHH--HHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee Q 019282 265 LHMPD-KLVWVGLER--LASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 265 ~hl~~-~~~~~~L~~--l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343) +++ .....++.. +...|++ |.+++..+.... -...++.+.+++.|..++..-. T Consensus 65 --v~~~~~v~~v~~~~~i~~~l~~--g~iiid~sT~~p--~~~~~~~~~~~~~g~~~vdapV 120 (163) T PF03446_consen 65 --VPDDDAVEAVLFGENILAGLRP--GKIIIDMSTISP--ETSRELAERLAAKGVRYVDAPV 120 (163) T ss_dssp --SSSHHHHHHHHHCTTHGGGS-T--TEEEEE-SS--H--HHHHHHHHHHHHTTEEEEEEEE T ss_pred --cccchhhhhhhhhhHHhhcccc--ceEEEecCCcch--hhhhhhhhhhhhccceeeeeee Confidence 444 445567777 8888887 555554321110 0156777888889988776543 No 339 >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Probab=58.95 E-value=38 Score=35.66 Aligned_cols=93 Identities=17% Similarity=0.228 Sum_probs=47.4 Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCC--ceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC--CCCceeEE Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPE--NFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG--SGVVYDLI 258 (343) Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~--~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~--~~~~fDlI 258 (343) .+|+=+||| +++..+++.+... .++++|.|+.. .+..++ .+. .+ +.+|..+..-+. .-+..|++ T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~--v~~~~~---~g~---~v--~~GDat~~~~L~~agi~~A~~v 468 (621) T PRK03562 401 PRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDH--IETLRK---FGM---KV--FYGDATRMDLLESAGAAKAEVL 468 (621) T ss_pred CcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHH--HHHHHh---cCC---eE--EEEeCCCHHHHHhcCCCcCCEE Confidence 467776665 5677777766444 45566665543 333332 122 33 333333321111 12467777 Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ++. .++++....+-...|.+.| +-.++.. T Consensus 469 vv~-----~~d~~~n~~i~~~ar~~~p-~~~iiaR 497 (621) T PRK03562 469 INA-----IDDPQTSLQLVELVKEHFP-HLQIIAR 497 (621) T ss_pred EEE-----eCCHHHHHHHHHHHHHhCC-CCeEEEE Confidence 763 3444433355556666778 7666553 No 340 >cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Probab=58.85 E-value=40 Score=31.94 Aligned_cols=101 Identities=17% Similarity=0.205 Sum_probs=53.4 Q ss_pred HhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC-------c Q 019282 175 EASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD-------F 246 (343) Q Consensus 175 ~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d-------l 246 (343) ....+.++.+||-.|+|. |..+..+++..+... ++.++.+.......++. +. . ..+..+..+ + T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~--v~~~~~~~~~~~~~~~~---g~---~-~vi~~~~~~~~~~~~~~ 226 (343) T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATK--VVVTDIDPSRLEFAKEL---GA---T-HTVNVRTEDTPESAEKI 226 (343) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcE--EEEECCCHHHHHHHHHc---CC---c-EEeccccccchhHHHHH Confidence 346788899999888764 556666666543221 33333333344433332 11 0 111111111 1 Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ........+|+|+-.... . ..+....+.|++ +|+++.. T Consensus 227 ~~~~~~~~~d~vld~~g~-----~---~~~~~~~~~l~~-~G~~v~~ 264 (343) T cd05285 227 AELLGGKGPDVVIECTGA-----E---SCIQTAIYATRP-GGTVVLV 264 (343) T ss_pred HHHhCCCCCCEEEECCCC-----H---HHHHHHHHHhhc-CCEEEEE Confidence 112223458999864221 1 157788999999 9998754 No 341 >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. Probab=58.34 E-value=42 Score=34.52 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=54.3 Q ss_pred CCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc-------------CC Q 019282 180 TPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED-------------MD 245 (343) Q Consensus 180 ~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~-------------~d 245 (343) .++.+||=+|||. |..+..++..++. .++++|.+. ...+.++... . ....+.... .+ T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~--~rle~a~~lG---a---~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511) T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRP--EVKEQVQSMG---A---EFLELDFKEEGGSGDGYAKVMSEE 232 (511) T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCH--HHHHHHHHcC---C---eEEeccccccccccccceeecCHH Confidence 3568999999985 4555556665543 345555544 4444444321 1 110110000 00 Q ss_pred cCC-----CC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEE Q 019282 246 FTK-----FG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIF 291 (343) Q Consensus 246 l~~-----~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lv 291 (343) +.+ +. ....+|+|+....+.--+.+.. +.+++.+.+|| |++++ T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~L--it~emv~~MKp-GsvIV 281 (511) T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTALIPGKPAPKL--ITEEMVDSMKA-GSVIV 281 (511) T ss_pred HHHHHHHHHHHHhCCCCEEEECcccCCCCCCee--ehHHHHhhCCC-CCEEE Confidence 000 00 1246999988765544444444 67889999999 98876 No 342 >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Probab=58.25 E-value=34 Score=32.72 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=27.8 Q ss_pred cCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHh Q 019282 177 SHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYE 225 (343) Q Consensus 177 ~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~ 225 (343) ..++++.+||=+|||. |..+..+++..+. .+.++ +.++...+.+++ T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~--~~~~~~~~~~~~ 208 (349) T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAI--DIDPEKLEMMKG 208 (349) T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEE--cCCHHHHHHHHH Confidence 5678899999999864 5555666665432 34444 444444444443 No 343 >PRK10669 putative cation:proton antiport protein; Provisional Probab=57.55 E-value=49 Score=34.23 Aligned_cols=111 Identities=18% Similarity=0.133 Sum_probs=53.3 Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCc--eEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC--CCCceeEE Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPEN--FHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG--SGVVYDLI 258 (343) Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~--~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~--~~~~fDlI 258 (343) .+|+=+ |-|+++..+++.+...+ +.++|.|+ ......++ .+ ...+.++..+-.-+. .-+..|.+ T Consensus 418 ~hiiI~--G~G~~G~~la~~L~~~g~~vvvId~d~--~~~~~~~~---~g-----~~~i~GD~~~~~~L~~a~i~~a~~v 485 (558) T PRK10669 418 NHALLV--GYGRVGSLLGEKLLAAGIPLVVIETSR--TRVDELRE---RG-----IRAVLGNAANEEIMQLAHLDCARWL 485 (558) T ss_pred CCEEEE--CCChHHHHHHHHHHHCCCCEEEEECCH--HHHHHHHH---CC-----CeEEEcCCCCHHHHHhcCccccCEE Confidence 355555 45568888888775444 55555554 33333332 11 223444333321111 12467766 Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343) Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343) +.. .+++.....+-...+...| +-.++.... .+ +-.+.++++|-..+ T Consensus 486 iv~-----~~~~~~~~~iv~~~~~~~~-~~~iiar~~-------~~-~~~~~l~~~Gad~v 532 (558) T PRK10669 486 LLT-----IPNGYEAGEIVASAREKRP-DIEIIARAH-------YD-DEVAYITERGANQV 532 (558) T ss_pred EEE-----cCChHHHHHHHHHHHHHCC-CCeEEEEEC-------CH-HHHHHHHHcCCCEE Confidence 542 3333332234444566677 766655431 12 22344567776543 No 344 >PRK11524 putative methyltransferase; Provisional Probab=57.41 E-value=24 Score=33.13 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=37.7 Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHH Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFR 223 (343) Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a 223 (343) ..+++.+... .-.+|..|||-=||+|..+....+ + +..+.++++++.+...+.. T Consensus 195 ~~L~erlI~~-~S~~GD~VLDPF~GSGTT~~AA~~-l-gR~~IG~Ei~~~Y~~~a~~ 248 (284) T PRK11524 195 EALLKRIILA-SSNPGDIVLDPFAGSFTTGAVAKA-S-GRKFIGIEINSEYIKMGLR 248 (284) T ss_pred HHHHHHHHHH-hCCCCCEEEECCCCCcHHHHHHHH-c-CCCEEEEeCCHHHHHHHHH Confidence 3556666543 346789999999999999886655 2 3567777777766665543 No 345 >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] Probab=57.28 E-value=60 Score=31.95 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=62.8 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEc Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343) ..+|||-=+|||.=++.++...+...++.-|+++...+.... +...+. ......+..++-.+. ......||+|=. T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~--Nv~~N~-~~~~~v~n~DAN~lm-~~~~~~fd~IDi- 127 (380) T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKE--NVRLNS-GEDAEVINKDANALL-HELHRAFDVIDI- 127 (380) T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHH--HHHhcC-cccceeecchHHHHH-HhcCCCccEEec- Confidence 678999999999999999887766556667777766655533 332221 112333322111111 112367888733 Q ss_pred cccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 262 AVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 262 ~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ..| +.+.- +++...+.++. ||.+.++ T Consensus 128 DPF---GSPaP--FlDaA~~s~~~-~G~l~vT 153 (380) T COG1867 128 DPF---GSPAP--FLDAALRSVRR-GGLLCVT 153 (380) T ss_pred CCC---CCCch--HHHHHHHHhhc-CCEEEEE Confidence 222 23333 88999999999 9999987 No 346 >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD Probab=57.23 E-value=83 Score=28.52 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=52.3 Q ss_pred hcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCc Q 019282 176 ASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVV 254 (343) Q Consensus 176 ~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~ 254 (343) ...+.++.+||=.|||. |..+..+++..+... ++.++.+......+++. +..+ .+.... ... ..... T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~--vi~~~~~~~~~~~~~~~---g~~~-~~~~~~---~~~---~~~~~ 159 (277) T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGARE--VVGVDPDAARRELAEAL---GPAD-PVAADT---ADE---IGGRG 159 (277) T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc--EEEECCCHHHHHHHHHc---CCCc-cccccc---hhh---hcCCC Confidence 35678889999998865 556666666544322 44444444444444432 1111 110000 011 12346 Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +|+|+..... . ..+....+.|++ +|+++.. T Consensus 160 ~d~vl~~~~~-----~---~~~~~~~~~l~~-~g~~~~~ 189 (277) T cd08255 160 ADVVIEASGS-----P---SALETALRLLRD-RGRVVLV 189 (277) T ss_pred CCEEEEccCC-----h---HHHHHHHHHhcC-CcEEEEE Confidence 8888753211 1 156788899999 9998754 No 347 >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. Probab=56.32 E-value=69 Score=32.06 Aligned_cols=101 Identities=9% Similarity=0.047 Sum_probs=54.9 Q ss_pred hHHHHHHHHHhcCC-CCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc Q 019282 166 GRDVFEFLAEASHI-TPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED 243 (343) Q Consensus 166 ~~~~~~~l~~~~~l-~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~ 243 (343) ++...+-+.+..++ -+|.+|+=+|||+ |......++.++. .+.++++++... ..+... |. . .+ T Consensus 185 g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~--~~A~~~---G~---~--~~---- 249 (413) T cd00401 185 RESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICA--LQAAME---GY---E--VM---- 249 (413) T ss_pred chhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhH--HHHHhc---CC---E--Ec---- Confidence 44455555554443 5688999999996 4444444444443 566666665443 333321 22 1 11 Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHH-HHhccCCCCcEEEEE Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLER-LASKLRPYDGRIFVS 293 (343) Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~-l~r~LkP~GG~lvi~ 293 (343) +..+. -...|+|+.. .+... .+.. ..+.+|+ ||+++.. T Consensus 250 -~~~e~--v~~aDVVI~a-----tG~~~---~i~~~~l~~mk~-Ggilvnv 288 (413) T cd00401 250 -TMEEA--VKEGDIFVTT-----TGNKD---IITGEHFEQMKD-GAIVCNI 288 (413) T ss_pred -cHHHH--HcCCCEEEEC-----CCCHH---HHHHHHHhcCCC-CcEEEEe Confidence 11111 1246888764 22222 4554 5899999 9988765 No 348 >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD:alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A .... Probab=56.09 E-value=5.5 Score=32.03 Aligned_cols=84 Identities=21% Similarity=0.308 Sum_probs=49.4 Q ss_pred CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCCCCCCceeEEEEcccccc Q 019282 191 GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKFGSGVVYDLIYASAVFLH 266 (343) Q Consensus 191 GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~~~~~~fDlIvs~~v~~h 266 (343) |.|.++..+++..+ ..+.+++.+. ...+.+++... ...+.....++ .+......+|+|+-. T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~--~k~~~~~~~Ga-------~~~~~~~~~~~~~~i~~~~~~~~~d~vid~----- 65 (130) T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSE--EKLELAKELGA-------DHVIDYSDDDFVEQIRELTGGRGVDVVIDC----- 65 (130) T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSH--HHHHHHHHTTE-------SEEEETTTSSHHHHHHHHTTTSSEEEEEES----- T ss_pred ChHHHHHHHHHHcC-CEEEEEECCH--HHHHHHHhhcc-------cccccccccccccccccccccccceEEEEe----- Confidence 46888899998876 5555555554 44444444321 11222222222 111123479999764 Q ss_pred CCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 267 MPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 267 l~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .+.. ..++...++|+| +|++++. T Consensus 66 ~g~~---~~~~~~~~~l~~-~G~~v~v 88 (130) T PF00107_consen 66 VGSG---DTLQEAIKLLRP-GGRIVVV 88 (130) T ss_dssp SSSH---HHHHHHHHHEEE-EEEEEEE T ss_pred cCcH---HHHHHHHHHhcc-CCEEEEE Confidence 3322 278999999999 9999887 No 349 >PHA03308 transcriptional regulator ICP4; Provisional Probab=54.14 E-value=12 Score=39.54 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=35.8 Q ss_pred ccCCcccCCCCCcccccccccccCccccccccCCCCCCcccccccCCCCCHHHHHH Q 019282 36 SSLSTCNCPLSSTTTDAANAVRNGAVSDFARSEDDSSSSSRRFSERTSATKEDIEW 91 (343) Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (343) +|-|+-+|.++++|+.+... ..|-.||-+..+|.-.|....-.++++++|+-.. T Consensus 1255 ssssssscsssssss~ssss--~ed~d~~~~~~dr~~~g~~KKRGRK~LPpe~Ka~ 1308 (1463) T PHA03308 1255 SSSSSSSCSSSSSSSDSSSS--EEDGDEKNEKEDRERAGGGKRRGRQRLPIRDRVY 1308 (1463) T ss_pred cccccccccccCCCCCcccc--ccccccccchhhhhcCCCccccCCCCCChHHhhh Confidence 44455666666665554433 3455688888888766666678889999987655 No 350 >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino Probab=54.04 E-value=52 Score=31.42 Aligned_cols=97 Identities=12% Similarity=0.167 Sum_probs=48.6 Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCce-EEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC-------cCCCC Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENF-HCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD-------FTKFG 250 (343) Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~-~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d-------l~~~~ 250 (343) ..++.+||=.|+| .++..+++.....++ .++.++.+.......++. +. . . .+.....+ +.... T Consensus 175 ~~~g~~vlI~g~g--~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~---g~-~-~--vi~~~~~~~~~~~~~i~~~~ 245 (361) T cd08231 175 VGAGDTVVVQGAG--PLGLYAVAAAKLAGARRVIVIDGSPERLELAREF---GA-D-A--TIDIDELPDPQRRAIVRDIT 245 (361) T ss_pred CCCCCEEEEECCC--HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc---CC-C-e--EEcCcccccHHHHHHHHHHh Confidence 3478888888764 455444333222344 455555544444444332 21 0 1 11111111 11111 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ....+|+|+-.. +.. ..+....+.|++ +|+++.. T Consensus 246 ~~~~~d~vid~~-----g~~---~~~~~~~~~l~~-~G~~v~~ 279 (361) T cd08231 246 GGRGADVVIEAS-----GHP---AAVPEGLELLRR-GGTYVLV 279 (361) T ss_pred CCCCCcEEEECC-----CCh---HHHHHHHHHhcc-CCEEEEE Confidence 234689887532 111 156788899999 9999764 No 351 >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. Probab=53.92 E-value=23 Score=29.34 Aligned_cols=90 Identities=24% Similarity=0.286 Sum_probs=46.4 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcCh-hHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDE-LSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~-s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343) ..+|==||+|. .+..|+..+...++.+.++.. +....+.+..+ +.. ... .++.+. ....|+|+. T Consensus 10 ~l~I~iIGaGr--VG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~----~~~--~~~-----~~~~~~--~~~aDlv~i 74 (127) T PF10727_consen 10 RLKIGIIGAGR--VGTALARALARAGHEVVGVYSRSPASAERAAAF----IGA--GAI-----LDLEEI--LRDADLVFI 74 (127) T ss_dssp --EEEEECTSC--CCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------TT------------TTGG--GCC-SEEEE T ss_pred ccEEEEECCCH--HHHHHHHHHHHCCCeEEEEEeCCcccccccccc----ccc--ccc-----cccccc--cccCCEEEE Confidence 45777788763 455555555557788888753 33222222211 111 101 122212 246899987 Q ss_pred ccccccCCchHHHHHHHHHHhc--cCCCCcEEEEE Q 019282 261 SAVFLHMPDKLVWVGLERLASK--LRPYDGRIFVS 293 (343) Q Consensus 261 ~~v~~hl~~~~~~~~L~~l~r~--LkP~GG~lvi~ 293 (343) -++|.....+.+++... .+| |.+++. T Consensus 75 -----avpDdaI~~va~~La~~~~~~~--g~iVvH 102 (127) T PF10727_consen 75 -----AVPDDAIAEVAEQLAQYGAWRP--GQIVVH 102 (127) T ss_dssp ------S-CCHHHHHHHHHHCC--S-T--T-EEEE T ss_pred -----EechHHHHHHHHHHHHhccCCC--CcEEEE Confidence 58888888888888877 777 677665 No 352 >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an Probab=53.47 E-value=1.6e+02 Score=27.33 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=51.1 Q ss_pred cCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCce Q 019282 177 SHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343) Q Consensus 177 ~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343) ..+.++.+||-+||| .|..+..+++..+ +.++.++.+....+..++. +. . ..+.....+...- ..+.+ T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G---~~v~~~~~~~~~~~~~~~~---g~---~-~~~~~~~~~~~~~-~~~~~ 226 (330) T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMG---FETVAITRSPDKRELARKL---GA---D-EVVDSGAELDEQA-AAGGA 226 (330) T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHh---CC---c-EEeccCCcchHHh-ccCCC Confidence 567888899999886 5666666666543 3344444444444433321 11 1 1111100111100 12358 Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) |+++... ... ..+..+.+.|++ +|.++.. T Consensus 227 d~vi~~~-----~~~---~~~~~~~~~l~~-~G~~i~~ 255 (330) T cd08245 227 DVILVTV-----VSG---AAAEAALGGLRR-GGRIVLV 255 (330) T ss_pred CEEEECC-----CcH---HHHHHHHHhccc-CCEEEEE Confidence 8887532 111 156778899999 9988764 No 353 >PLN02740 Alcohol dehydrogenase-like Probab=53.32 E-value=1.2e+02 Score=29.43 Aligned_cols=100 Identities=13% Similarity=0.051 Sum_probs=51.3 Q ss_pred HhcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC--Cc----C Q 019282 175 EASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM--DF----T 247 (343) Q Consensus 175 ~~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~--dl----~ 247 (343) +...++++.+||=+|+| .|..+..+++..+... ++.++.+....+.+++. +. . .++..... ++ . T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~--Vi~~~~~~~r~~~a~~~---Ga---~-~~i~~~~~~~~~~~~v~ 262 (381) T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARARGASK--IIGVDINPEKFEKGKEM---GI---T-DFINPKDSDKPVHERIR 262 (381) T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCc--EEEEcCChHHHHHHHHc---CC---c-EEEecccccchHHHHHH Confidence 34578889999999875 2334444555443223 44444444444444432 21 1 11111100 11 1 Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCC-cEEEEE Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYD-GRIFVS 293 (343) Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~G-G~lvi~ 293 (343) ... .+.+|+|+-. .+... .+....+.+++ | |++++. T Consensus 263 ~~~-~~g~dvvid~-----~G~~~---~~~~a~~~~~~-g~G~~v~~ 299 (381) T PLN02740 263 EMT-GGGVDYSFEC-----AGNVE---VLREAFLSTHD-GWGLTVLL 299 (381) T ss_pred HHh-CCCCCEEEEC-----CCChH---HHHHHHHhhhc-CCCEEEEE Confidence 111 2258888653 33222 57778888888 7 888664 No 354 >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Probab=53.16 E-value=53 Score=31.23 Aligned_cols=100 Identities=19% Similarity=0.144 Sum_probs=52.6 Q ss_pred hcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCCC Q 019282 176 ASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKFG 250 (343) Q Consensus 176 ~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~~ 250 (343) ...++++.+||=.|+| .|..+..+++..+...+.+++.+. .....+++. +. . ..+.....++ .... T Consensus 161 ~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~--~~~~~~~~~---g~-~---~~v~~~~~~~~~~i~~~~ 231 (351) T cd08285 161 LANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRP--NRVELAKEY---GA-T---DIVDYKNGDVVEQILKLT 231 (351) T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH--HHHHHHHHc---CC-c---eEecCCCCCHHHHHHHHh Confidence 3567888999999876 445555556654433344555443 333333332 21 0 1111111111 1111 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ....+|+|+-. .... ..+..+.+.|++ +|+++.. T Consensus 232 ~~~~~d~vld~-----~g~~---~~~~~~~~~l~~-~G~~v~~ 265 (351) T cd08285 232 GGKGVDAVIIA-----GGGQ---DTFEQALKVLKP-GGTISNV 265 (351) T ss_pred CCCCCcEEEEC-----CCCH---HHHHHHHHHhhc-CCEEEEe Confidence 23468988753 2221 257888999999 9998753 No 355 >PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C. Probab=52.81 E-value=22 Score=30.80 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=31.1 Q ss_pred CchHHHHHHHHHHhccCCCCcEEEEEecccc------ccCC--CHHHHHHHHHhcCCcEEEeee Q 019282 268 PDKLVWVGLERLASKLRPYDGRIFVSHNIKF------CSRL--GGEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 268 ~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~------~~~~--~~~~l~~~L~~aGf~~v~~~~ 323 (343) ..+....+++-+++.|.| ||+++++.-.+- ..-. ....+-..|.++||+..+.-. T Consensus 61 ~s~~E~~l~~~~~~~l~p-g~~lfVeY~~D~eT~~~L~~G~pp~~TrLG~~Ll~~GFtwfKdWY 123 (170) T PF06557_consen 61 GSPLEDELYKLFSRYLEP-GGRLFVEYVEDRETRRQLQRGVPPAETRLGFSLLKAGFTWFKDWY 123 (170) T ss_dssp TSHHHHHHHHHHHTT-----SEEEEE-TT-HHHHHHHHTT--GGGSHHHHHHHTTT--EEEEEE T ss_pred CChHHHHHHHHHHHHhhh-cCeEEEEEecCHHHHHHHHcCCCcccchhHHHHHhCCcEEEeeee Confidence 344455689999999999 999999832111 1111 145567788999999877544 No 356 >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process Probab=52.07 E-value=50 Score=26.09 Aligned_cols=59 Identities=22% Similarity=0.270 Sum_probs=41.0 Q ss_pred cccccCCchHHHHHHHHHHhccCCCCcEEEEEecc-------------cc--------ccCCCHHHHHHHHHhcCCcEEE Q 019282 262 AVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI-------------KF--------CSRLGGEECTKRLTSLGLEYIG 320 (343) Q Consensus 262 ~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~-------------~~--------~~~~~~~~l~~~L~~aGf~~v~ 320 (343) .++-|.+.++....|..+....+ |.+++++-. -| .....++.+.+.+.++||++.+ T Consensus 3 DvLIHYp~~d~~~~l~~La~~t~---~~~ifTfAP~T~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~~~~r 79 (97) T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRTR---GSLIFTFAPRTPLLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGWRIGR 79 (97) T ss_pred ceEeccCHHHHHHHHHHHHHhcc---CcEEEEECCCCHHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCCeeee Confidence 45668888888888888888776 566666310 01 1122389999999999999877 Q ss_pred eee Q 019282 321 KKT 323 (343) Q Consensus 321 ~~~ 323 (343) .+. T Consensus 80 ~~r 82 (97) T PF07109_consen 80 TER 82 (97) T ss_pred ccc Confidence 554 No 357 >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta Probab=51.15 E-value=1.3e+02 Score=27.96 Aligned_cols=96 Identities=21% Similarity=0.254 Sum_probs=54.2 Q ss_pred HhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCc Q 019282 175 EASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVV 254 (343) Q Consensus 175 ~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~ 254 (343) +...+.++.+||=.|+ |.++..+++.....+..++.++.+......+++. +.. ... +......... T Consensus 149 ~~~~~~~g~~vlV~g~--g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~---g~~----~~~-----~~~~~~~~~~ 214 (319) T cd08242 149 EQVPITPGDKVAVLGD--GKLGLLIAQVLALTGPDVVLVGRHSEKLALARRL---GVE----TVL-----PDEAESEGGG 214 (319) T ss_pred HhcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHc---CCc----EEe-----CccccccCCC Confidence 3456788899999875 5566665554433455555555555555544432 211 111 1111112356 Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +|+|+-. .+.. ..+....+.|++ +|.+++. T Consensus 215 ~d~vid~-----~g~~---~~~~~~~~~l~~-~g~~v~~ 244 (319) T cd08242 215 FDVVVEA-----TGSP---SGLELALRLVRP-RGTVVLK 244 (319) T ss_pred CCEEEEC-----CCCh---HHHHHHHHHhhc-CCEEEEE Confidence 8988764 2221 156778889999 9998763 No 358 >PRK13699 putative methylase; Provisional Probab=50.93 E-value=41 Score=30.58 Aligned_cols=52 Identities=21% Similarity=0.130 Sum_probs=35.7 Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHH Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAF 222 (343) Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~ 222 (343) ++.+.+... .-.+|..|||-=||+|..+....+ + ...+.++++++.....+. T Consensus 151 ~l~~~~i~~-~s~~g~~vlDpf~Gsgtt~~aa~~-~-~r~~~g~e~~~~y~~~~~ 202 (227) T PRK13699 151 TSLQPLIES-FTHPNAIVLDPFAGSGSTCVAALQ-S-GRRYIGIELLEQYHRAGQ 202 (227) T ss_pred HHHHHHHHH-hCCCCCEEEeCCCCCCHHHHHHHH-c-CCCEEEEecCHHHHHHHH Confidence 455555543 345788999999999999886665 2 356677777776655553 No 359 >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in Probab=50.70 E-value=68 Score=30.29 Aligned_cols=102 Identities=10% Similarity=0.079 Sum_probs=55.0 Q ss_pred HHHhcCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc---- Q 019282 173 LAEASHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF---- 246 (343) Q Consensus 173 l~~~~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl---- 246 (343) +.+...+.++.+||=.|+ |.|..+..+++.. +..++.++.+.......++. .|. . .+... .+..++ T Consensus 143 l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~---G~~Vi~~~~~~~~~~~~~~~--lGa-~-~vi~~-~~~~~~~~~i 214 (338) T cd08295 143 FYEVCKPKKGETVFVSAASGAVGQLVGQLAKLK---GCYVVGSAGSDEKVDLLKNK--LGF-D-DAFNY-KEEPDLDAAL 214 (338) T ss_pred HHHhcCCCCCCEEEEecCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHh--cCC-c-eeEEc-CCcccHHHHH Confidence 333457888999998886 5666777777754 33454444444333333320 122 1 11110 000111 Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .... .+.+|+|+-. ++. ..+....++|++ +|+++.. T Consensus 215 ~~~~-~~gvd~v~d~-----~g~----~~~~~~~~~l~~-~G~iv~~ 250 (338) T cd08295 215 KRYF-PNGIDIYFDN-----VGG----KMLDAVLLNMNL-HGRIAAC 250 (338) T ss_pred HHhC-CCCcEEEEEC-----CCH----HHHHHHHHHhcc-CcEEEEe Confidence 1111 2468888653 332 157889999999 9998754 No 360 >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Probab=49.93 E-value=59 Score=30.86 Aligned_cols=101 Identities=22% Similarity=0.315 Sum_probs=51.4 Q ss_pred HhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCce-EEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCC Q 019282 175 EASHITPNSHVLEIGCGTLRVGVHFIRYLNPENF-HCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKF 249 (343) Q Consensus 175 ~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~-~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~ 249 (343) ....+.++.+||=.|+| .++..+++.....++ .++.++.+......+++. +. . ..+.....++ .+. T Consensus 166 ~~~~~~~g~~vlI~g~g--~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~---ga---~-~~i~~~~~~~~~~l~~~ 236 (351) T cd08233 166 RRSGFKPGDTALVLGAG--PIGLLTILALKAAGASKIIVSEPSEARRELAEEL---GA---T-IVLDPTEVDVVAEVRKL 236 (351) T ss_pred HhcCCCCCCEEEEECCC--HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh---CC---C-EEECCCccCHHHHHHHH Confidence 34567888899888764 444444333322344 444444444444444332 11 1 1111111111 111 Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ...+.+|+|+-... .. ..+..+.+.|++ +|+++.. T Consensus 237 ~~~~~~d~vid~~g-----~~---~~~~~~~~~l~~-~G~~v~~ 271 (351) T cd08233 237 TGGGGVDVSFDCAG-----VQ---ATLDTAIDALRP-RGTAVNV 271 (351) T ss_pred hCCCCCCEEEECCC-----CH---HHHHHHHHhccC-CCEEEEE Confidence 12235899876422 11 157788899999 9998764 No 361 >COG1568 Predicted methyltransferases [General function prediction only] Probab=48.41 E-value=37 Score=32.22 Aligned_cols=102 Identities=12% Similarity=0.093 Sum_probs=52.2 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCC---CCCcee Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFG---SGVVYD 256 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~---~~~~fD 256 (343) .|.+|+=+|- .-..++.++-.--+..+-++|||..-.. +-++... .|+. ++..+. .|+.+.- ....|| T Consensus 152 ~gK~I~vvGD-DDLtsia~aLt~mpk~iaVvDIDERli~--fi~k~aee~g~~--~ie~~~---~Dlr~plpe~~~~kFD 223 (354) T COG1568 152 EGKEIFVVGD-DDLTSIALALTGMPKRIAVVDIDERLIK--FIEKVAEELGYN--NIEAFV---FDLRNPLPEDLKRKFD 223 (354) T ss_pred CCCeEEEEcC-chhhHHHHHhcCCCceEEEEechHHHHH--HHHHHHHHhCcc--chhhee---ehhcccChHHHHhhCC Confidence 3678999983 3333443332222356778888875432 2233322 2332 222221 2443221 246899 Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCC---cEEEEEe Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYD---GRIFVSH 294 (343) Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~G---G~lvi~~ 294 (343) +++.--.- -+. ....++.+=...||. . |++.++. T Consensus 224 vfiTDPpe-Ti~--alk~FlgRGI~tLkg-~~~aGyfgiT~ 260 (354) T COG1568 224 VFITDPPE-TIK--ALKLFLGRGIATLKG-EGCAGYFGITR 260 (354) T ss_pred eeecCchh-hHH--HHHHHHhccHHHhcC-CCccceEeeee Confidence 98763211 111 233366666677876 5 7788874 No 362 >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional Probab=47.99 E-value=50 Score=31.37 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=48.8 Q ss_pred cCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC---cCCCCCC Q 019282 177 SHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD---FTKFGSG 252 (343) Q Consensus 177 ~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d---l~~~~~~ 252 (343) ..+.++.+||=.|+|+ |..+..+++...... ++.++.+......+++.. . . . .+.....+ +...... T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~--v~~~~~~~~~~~~~~~~G---a-~-~--~i~~~~~~~~~~~~~~~~ 226 (347) T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKS--VTAIDINSEKLALAKSLG---A-M-Q--TFNSREMSAPQIQSVLRE 226 (347) T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe--EEEECCCHHHHHHHHHcC---C-c-e--EecCcccCHHHHHHHhcC Confidence 4667888999998753 334444555443222 333444444444443321 1 0 1 11110001 1111122 Q ss_pred Ccee-EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 253 VVYD-LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 253 ~~fD-lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ..+| +|+- ..+.. ..+....+.|++ ||++++. T Consensus 227 ~~~d~~v~d-----~~G~~---~~~~~~~~~l~~-~G~iv~~ 259 (347) T PRK10309 227 LRFDQLILE-----TAGVP---QTVELAIEIAGP-RAQLALV 259 (347) T ss_pred CCCCeEEEE-----CCCCH---HHHHHHHHHhhc-CCEEEEE Confidence 3566 5543 23322 267888899999 9998875 No 363 >PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV. Probab=47.96 E-value=8.4 Score=22.25 Aligned_cols=19 Identities=26% Similarity=0.551 Sum_probs=13.5 Q ss_pred HHHHHHHHHHhccCCcccC Q 019282 25 SVAAIFFFFLLSSLSTCNC 43 (343) Q Consensus 25 ~~~~~~~~~~~~~~~~~~~ 43 (343) ++|.+++.|+|...-.|+| T Consensus 5 ~FalivVLFILLiIvG~s~ 23 (24) T PF09680_consen 5 GFALIVVLFILLIIVGASC 23 (24) T ss_pred cchhHHHHHHHHHHhccee Confidence 4566677777777777877 No 364 >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... Probab=47.43 E-value=27 Score=30.57 Aligned_cols=45 Identities=18% Similarity=0.103 Sum_probs=28.3 Q ss_pred HHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC-CcEEEe Q 019282 273 WVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG-LEYIGK 321 (343) Q Consensus 273 ~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG-f~~v~~ 321 (343) ...+.+++|+||| ||.+++..+...... ......++..| |..... T Consensus 36 ~~~~~~~~rvLk~-~g~~~i~~~~~~~~~---~~~~~~~~~~g~~~~~~~ 81 (231) T PF01555_consen 36 EEWLKECYRVLKP-GGSIFIFIDDREIAG---FLFELALEIFGGFFLRNE 81 (231) T ss_dssp HHHHHHHHHHEEE-EEEEEEEE-CCEECT---HHHHHHHHHHTT-EEEEE T ss_pred HHHHHHHHhhcCC-CeeEEEEecchhhhH---HHHHHHHHHhhhhheecc Confidence 4589999999999 999988754333321 12334455567 876654 No 365 >cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid Probab=46.63 E-value=1.8e+02 Score=27.27 Aligned_cols=98 Identities=11% Similarity=0.143 Sum_probs=51.8 Q ss_pred cCCCCC--CeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC----C Q 019282 177 SHITPN--SHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT----K 248 (343) Q Consensus 177 ~~l~~~--~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~----~ 248 (343) ..+.++ .+||=.|+ |.|..+..+++..+... ++.++.+........+ ..|. . . .+.....++. . T Consensus 148 ~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~--Vi~~~~s~~~~~~~~~--~lGa-~-~--vi~~~~~~~~~~i~~ 219 (345) T cd08293 148 GHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSR--VVGICGSDEKCQLLKS--ELGF-D-A--AINYKTDNVAERLRE 219 (345) T ss_pred ccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCE--EEEEcCCHHHHHHHHH--hcCC-c-E--EEECCCCCHHHHHHH Confidence 456655 78998885 57777777887654323 4444443333332222 0122 1 1 1211111221 1 Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) . .++.+|+|+-. ++.. .+....++|++ +|+++.. T Consensus 220 ~-~~~gvd~vid~-----~g~~----~~~~~~~~l~~-~G~iv~~ 253 (345) T cd08293 220 L-CPEGVDVYFDN-----VGGE----ISDTVISQMNE-NSHIILC 253 (345) T ss_pred H-CCCCceEEEEC-----CCcH----HHHHHHHHhcc-CCEEEEE Confidence 1 12468988753 2222 35778899999 9998763 No 366 >PRK05225 ketol-acid reductoisomerase; Validated Probab=46.24 E-value=48 Score=33.71 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=27.9 Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343) ...|+|+.. +|+.....+.+++...||| |..|.++|+ T Consensus 96 ~~ADvVviL-----lPDt~q~~v~~~i~p~LK~-Ga~L~fsHG 132 (487) T PRK05225 96 PQADLVINL-----TPDKQHSDVVRAVQPLMKQ-GAALGYSHG 132 (487) T ss_pred HhCCEEEEc-----CChHHHHHHHHHHHhhCCC-CCEEEecCC Confidence 467888874 4554444567999999999 999998863 No 367 >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. Probab=45.93 E-value=1.1e+02 Score=28.73 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=36.8 Q ss_pred ceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee Q 019282 254 VYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343) Q Consensus 254 ~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343) ..|+|+.. +++.....+++++...|++ | .+++....... ....++.+.+++.|...+..- T Consensus 59 ~~dvIi~~-----vp~~~~~~v~~~l~~~l~~-g-~ivid~st~~~--~~t~~~~~~~~~~g~~~vda~ 118 (298) T TIGR00872 59 APRVVWVM-----VPHGIVDAVLEELAPTLEK-G-DIVIDGGNSYY--KDSLRRYKLLKEKGIHLLDCG 118 (298) T ss_pred CCCEEEEE-----cCchHHHHHHHHHHhhCCC-C-CEEEECCCCCc--ccHHHHHHHHHhcCCeEEecC Confidence 45888764 4555566688999999998 4 55555321111 124455567777887766543 No 368 >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A. Probab=45.88 E-value=49 Score=25.03 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=25.1 Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHH-HHHHHcCCCceEEEEcC Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGV-HFIRYLNPENFHCLERD 214 (343) Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~-~la~~~~~~~~~vvdid 214 (343) ++.++.+.....+...++||=|||-+|.-+. .++..+ ..+...++++ T Consensus 24 ~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aF-g~gA~TiGV~ 71 (78) T PF12242_consen 24 ENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAF-GAGADTIGVS 71 (78) T ss_dssp HHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHH-CC--EEEEEE T ss_pred HHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHh-cCCCCEEEEe Confidence 4566667665566555899999999986543 234444 2445555554 No 369 >cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic Probab=44.93 E-value=87 Score=28.54 Aligned_cols=98 Identities=20% Similarity=0.305 Sum_probs=49.0 Q ss_pred hcCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCC Q 019282 176 ASHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKF 249 (343) Q Consensus 176 ~~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~ 249 (343) ...+.++..||-.|| +.|..+..+++.. ++.++.++.+........+. +. . . .+.....++ ... T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~~---g~-~-~--~~~~~~~~~~~~i~~~ 203 (323) T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKAL---GARVIAAASSEEKLALARAL---GA-D-H--VIDYRDPDLRERVKAL 203 (323) T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHh---CCEEEEEeCCHHHHHHHHHc---CC-c-e--eeecCCccHHHHHHHH Confidence 356778889999998 3455555555543 33344444433333333221 11 0 1 111111111 111 Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .....+|+++.. .+.. .+..+.+.+++ +|.++.. T Consensus 204 ~~~~~~d~v~~~-----~g~~----~~~~~~~~~~~-~g~~v~~ 237 (323) T cd08241 204 TGGRGVDVVYDP-----VGGD----VFEASLRSLAW-GGRLLVI 237 (323) T ss_pred cCCCCcEEEEEC-----ccHH----HHHHHHHhhcc-CCEEEEE Confidence 122458888653 2221 45667888999 9987653 No 370 >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu Probab=43.63 E-value=85 Score=30.17 Aligned_cols=98 Identities=15% Similarity=0.177 Sum_probs=51.9 Q ss_pred cCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCCCC Q 019282 177 SHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKFGS 251 (343) Q Consensus 177 ~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~~~ 251 (343) ..+.++.+||=.|+|. |..+..+++..+...+.+++.+ ......+++. +. ...+.....++ .... T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~--~~k~~~~~~~---g~----~~~i~~~~~~~~~~v~~~~- 251 (365) T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIV--DSRLELAKEL---GA----THVINPKEEDLVAAIREIT- 251 (365) T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHc---CC----cEEecCCCcCHHHHHHHHh- Confidence 4677888999998753 5555556665543334444444 3333333332 11 11111111111 1111 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ...+|+|+-.. +... .+..+.+.|++ +|+++.. T Consensus 252 ~~~~d~vld~~-----g~~~---~~~~~~~~l~~-~G~~v~~ 284 (365) T cd08278 252 GGGVDYALDTT-----GVPA---VIEQAVDALAP-RGTLALV 284 (365) T ss_pred CCCCcEEEECC-----CCcH---HHHHHHHHhcc-CCEEEEe Confidence 34688887532 2111 57788999999 9998764 No 371 >cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Probab=42.96 E-value=1.7e+02 Score=27.30 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=52.5 Q ss_pred HhcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC--CCCC Q 019282 175 EASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT--KFGS 251 (343) Q Consensus 175 ~~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~--~~~~ 251 (343) ....+.++.+||-+|+| .|..+..+++..+... ++.++.+.......++. +.. ..+.....+.. .... T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~--v~~~~~~~~~~~~~~~~---g~~----~~~~~~~~~~~~~~~~~ 223 (334) T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASR--VTVAEPNEEKLELAKKL---GAT----ETVDPSREDPEAQKEDN 223 (334) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcE--EEEECCCHHHHHHHHHh---CCe----EEecCCCCCHHHHHHhc Confidence 34577888999999865 2555555666543221 33334444444333321 110 11211111110 0112 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .+.+|+|+.. .+.. ..+..+.+.|++ +|+++.. T Consensus 224 ~~~vd~v~~~-----~~~~---~~~~~~~~~l~~-~G~~v~~ 256 (334) T cd08234 224 PYGFDVVIEA-----TGVP---KTLEQAIEYARR-GGTVLVF 256 (334) T ss_pred CCCCcEEEEC-----CCCh---HHHHHHHHHHhc-CCEEEEE Confidence 3568999863 2111 267888999999 9998764 No 372 >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] Probab=42.83 E-value=50 Score=30.36 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=34.9 Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChh Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDEL 216 (343) Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s 216 (343) ++.+.+.+..+.-...-|.+||.|.|+.+..+.++ +...+-++++|.. T Consensus 37 ~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~R 84 (326) T KOG0821|consen 37 RLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTR 84 (326) T ss_pred HHHHHHHHhccccccceeEEecCCCCchhHHHHhc-chhheeeeeeccc Confidence 45566666666556678999999999999998863 2245667777754 No 373 >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] Probab=42.82 E-value=45 Score=29.20 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=27.7 Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHH Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL 218 (343) Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~ 218 (343) .||+-.| |.|.++....+.+...++.+..||.+.. T Consensus 4 grVivYG-GkGALGSacv~~FkannywV~siDl~eN 38 (236) T KOG4022|consen 4 GRVIVYG-GKGALGSACVEFFKANNYWVLSIDLSEN 38 (236) T ss_pred ceEEEEc-CcchHhHHHHHHHHhcCeEEEEEeeccc Confidence 3566554 7889999999989889999999888553 No 374 >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. Probab=41.89 E-value=1.1e+02 Score=28.77 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=47.0 Q ss_pred cCCCCCCeEEEEcCCcCH----HHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCC Q 019282 177 SHITPNSHVLEIGCGTLR----VGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSG 252 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~----~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~ 252 (343) +.++..+|||-+|.|+-. -+.-|.+.+| .+...+|.|... .. .+ -...+.+ |...+..+ T Consensus 57 laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP-~~ailvDnDi~d--------~v----SD-a~~~~~~---Dc~t~~~~ 119 (299) T PF06460_consen 57 LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLP-EDAILVDNDIRD--------YV----SD-ADQSIVG---DCRTYMPP 119 (299) T ss_dssp ----TT-EEEEES---TTSB-HHHHHHHHHS--TT-EEEEEESS----------B-----S-SSEEEES----GGGEEES T ss_pred EeeccCcEEEEecccccCCcCCchHHHHHhCC-CCcEEEecchhh--------hc----cc-cCCceec---cccccCCC Confidence 445778999999987532 2334556665 466788888722 11 11 2233333 44444467 Q ss_pred CceeEEEEccc---cccC-----CchH-HHHHHHHHHhccCCCCcEEEEE Q 019282 253 VVYDLIYASAV---FLHM-----PDKL-VWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 253 ~~fDlIvs~~v---~~hl-----~~~~-~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .++|+|++-.- ..++ ..+. ..-+..-++..|+= ||.+.+- T Consensus 120 ~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaL-GGSvaiK 168 (299) T PF06460_consen 120 DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLAL-GGSVAIK 168 (299) T ss_dssp S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEE-EEEEEEE T ss_pred CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhc-CceEEEE Confidence 89999998543 1111 1111 11234556788888 9999875 No 375 >PLN02827 Alcohol dehydrogenase-like Probab=41.68 E-value=89 Score=30.37 Aligned_cols=98 Identities=13% Similarity=0.060 Sum_probs=49.6 Q ss_pred cCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc--CCc----CCC Q 019282 177 SHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED--MDF----TKF 249 (343) Q Consensus 177 ~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~--~dl----~~~ 249 (343) ..+.++.+||=.|+|. |..+..+++..+.. .++.++.+......+++. +. . ..+.... .++ .+. T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~--~vi~~~~~~~~~~~a~~l---Ga-~---~~i~~~~~~~~~~~~v~~~ 259 (378) T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGAS--QIIGVDINPEKAEKAKTF---GV-T---DFINPNDLSEPIQQVIKRM 259 (378) T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCHHHHHHHHHc---CC-c---EEEcccccchHHHHHHHHH Confidence 5678899999998753 33334444443322 244444444444444432 21 1 1111100 011 111 Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCC-cEEEEE Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYD-GRIFVS 293 (343) Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~G-G~lvi~ 293 (343) . .+.+|+|+-. .+... .+....+.+++ | |++++. T Consensus 260 ~-~~g~d~vid~-----~G~~~---~~~~~l~~l~~-g~G~iv~~ 294 (378) T PLN02827 260 T-GGGADYSFEC-----VGDTG---IATTALQSCSD-GWGLTVTL 294 (378) T ss_pred h-CCCCCEEEEC-----CCChH---HHHHHHHhhcc-CCCEEEEE Confidence 1 2258888653 33221 46778888999 8 999764 No 376 >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] Probab=41.50 E-value=74 Score=28.65 Aligned_cols=127 Identities=19% Similarity=0.161 Sum_probs=70.7 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHc----CCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC--- Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYL----NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF--- 249 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~----~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~--- 249 (343) ..++|. .|+|+|.-+|+-++.++... .+.++.++|+|..+...+..+ ...+.++.+...+..-. T Consensus 66 w~~~P~-lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~dpai~eqi 136 (237) T COG3510 66 WELQPS-LVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTDPAIAEQI 136 (237) T ss_pred HhcCCc-eeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCCHHHHHHH Confidence 344544 79999999999999988743 123455666666554333221 23677777644432100 Q ss_pred C-CCCceeEEE-EccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc-------ccccCCC---HHHHHHHHHhcC Q 019282 250 G-SGVVYDLIY-ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI-------KFCSRLG---GEECTKRLTSLG 315 (343) Q Consensus 250 ~-~~~~fDlIv-s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~-------~~~~~~~---~~~l~~~L~~aG 315 (343) . ..+.|--|+ +-..-|+...- ...|+-+.++|.- |-++++.++. ++..+++ .+.+...+++.+ T Consensus 137 ~~~~~~y~kIfvilDsdHs~~hv--LAel~~~~pllsa-G~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p 211 (237) T COG3510 137 RRLKNEYPKIFVILDSDHSMEHV--LAELKLLAPLLSA-GDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYLREFP 211 (237) T ss_pred HHHhcCCCcEEEEecCCchHHHH--HHHHHHhhhHhhc-CceEEEecccccCCCCcccchhcCCChHHHHHHHHHhCC Confidence 0 112233343 33444444332 2367778899999 8888887421 1222222 456666677666 No 377 >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Probab=41.39 E-value=1.3e+02 Score=26.55 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=29.7 Q ss_pred CCCceeEEEEccccccCCc----------hHHHHHHHHHHhccCCCCcEEEEE Q 019282 251 SGVVYDLIYASAVFLHMPD----------KLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~----------~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .++..|+|+++..++.+.. .....++.++..+|+| +..++.. T Consensus 47 ~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~-~allIW~ 98 (183) T cd01842 47 EGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPI-ECLIVWN 98 (183) T ss_pred cCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCC-ccEEEEe Confidence 3567899999999987754 2334566667777778 7777665 No 378 >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] Probab=40.89 E-value=1.4e+02 Score=28.12 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=59.9 Q ss_pred HHHHHhcCCCCCCeEEEE--cCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC- Q 019282 171 EFLAEASHITPNSHVLEI--GCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT- 247 (343) Q Consensus 171 ~~l~~~~~l~~~~rVLDI--GCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~- 247 (343) -.+.+..+++||..||=- ..|-|.++.++++.. +.+++....+....+.+++.. .. . .+....+|+. T Consensus 136 ~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~---~a~tI~~asTaeK~~~akenG---~~--h--~I~y~~eD~v~ 205 (336) T KOG1197|consen 136 MLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAV---GAHTIATASTAEKHEIAKENG---AE--H--PIDYSTEDYVD 205 (336) T ss_pred HHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhc---CcEEEEEeccHHHHHHHHhcC---Cc--c--eeeccchhHHH Confidence 345555789999988765 557777777777764 445555555555555555432 21 1 1211223331 Q ss_pred ---CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 248 ---KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 248 ---~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ++......|+++-+ ++.+ .++.-..+||| +|.++-- T Consensus 206 ~V~kiTngKGVd~vyDs-----vG~d----t~~~sl~~Lk~-~G~mVSf 244 (336) T KOG1197|consen 206 EVKKITNGKGVDAVYDS-----VGKD----TFAKSLAALKP-MGKMVSF 244 (336) T ss_pred HHHhccCCCCceeeecc-----ccch----hhHHHHHHhcc-CceEEEe Confidence 12224556776543 3333 67888999999 9998753 No 379 >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] Probab=40.77 E-value=83 Score=30.48 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=55.1 Q ss_pred CeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEc Q 019282 183 SHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343) Q Consensus 183 ~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343) .+|.=||.|. |..+..++--+. +.+++.|++...+..- .. ....++........++.+. -...|+|+.. T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glg-A~Vtild~n~~rl~~l--dd-----~f~~rv~~~~st~~~iee~--v~~aDlvIga 238 (371) T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLG-ADVTILDLNIDRLRQL--DD-----LFGGRVHTLYSTPSNIEEA--VKKADLVIGA 238 (371) T ss_pred ccEEEECCccccchHHHHHhccC-CeeEEEecCHHHHhhh--hH-----hhCceeEEEEcCHHHHHHH--hhhccEEEEE Confidence 4677788884 555555554332 4566666665333221 11 1222443333333333322 2478999876 Q ss_pred cccccCCchHHHHHHHHHHhccCCCCcEEE Q 019282 262 AVFLHMPDKLVWVGLERLASKLRPYDGRIF 291 (343) Q Consensus 262 ~v~~hl~~~~~~~~L~~l~r~LkP~GG~lv 291 (343) -.+.--..+.. +.+++.+.||| |++++ T Consensus 239 VLIpgakaPkL--vt~e~vk~Mkp-GsViv 265 (371) T COG0686 239 VLIPGAKAPKL--VTREMVKQMKP-GSVIV 265 (371) T ss_pred EEecCCCCcee--hhHHHHHhcCC-CcEEE Confidence 55544455666 88999999999 88775 No 380 >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me Probab=40.68 E-value=98 Score=29.63 Aligned_cols=100 Identities=16% Similarity=0.240 Sum_probs=51.4 Q ss_pred hcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC----cCCCC Q 019282 176 ASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD----FTKFG 250 (343) Q Consensus 176 ~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d----l~~~~ 250 (343) ...+.++.+||-.|+| .|..+..+++..+... ++.++.+.......++. +. ...+.....+ +.... T Consensus 177 ~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~--Vi~~~~~~~~~~~~~~~---g~----~~vv~~~~~~~~~~l~~~~ 247 (363) T cd08279 177 TARVRPGDTVAVIGCGGVGLNAIQGARIAGASR--IIAVDPVPEKLELARRF---GA----THTVNASEDDAVEAVRDLT 247 (363) T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc--EEEEcCCHHHHHHHHHh---CC----eEEeCCCCccHHHHHHHHc Confidence 3567788899999875 3555555666543222 33434333333333321 21 0111111111 11111 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ....+|+|+... +.. ..+....+.|++ +|+++.. T Consensus 248 ~~~~vd~vld~~-----~~~---~~~~~~~~~l~~-~G~~v~~ 281 (363) T cd08279 248 DGRGADYAFEAV-----GRA---ATIRQALAMTRK-GGTAVVV 281 (363) T ss_pred CCCCCCEEEEcC-----CCh---HHHHHHHHHhhc-CCeEEEE Confidence 235689887532 211 257888999999 9998764 No 381 >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i Probab=40.28 E-value=1.3e+02 Score=28.98 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=50.5 Q ss_pred HhcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC----cCCC Q 019282 175 EASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD----FTKF 249 (343) Q Consensus 175 ~~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d----l~~~ 249 (343) +...+.++.+||=+|+| .|..+..+++..+.. .++.++.+....+.+++.... .+........+ +... T Consensus 178 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~--~Vi~~~~~~~~~~~~~~~ga~-----~~i~~~~~~~~~~~~~~~~ 250 (365) T cd08277 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGAS--RIIGVDINEDKFEKAKEFGAT-----DFINPKDSDKPVSEVIREM 250 (365) T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHcCCC-----cEeccccccchHHHHHHHH Confidence 34567889999999875 233444455554322 344444444444444432211 11000000000 1111 Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCC-cEEEEE Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYD-GRIFVS 293 (343) Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~G-G~lvi~ 293 (343) . .+.+|+|+-. .+.. ..+....+.++| + |++++. T Consensus 251 ~-~~g~d~vid~-----~g~~---~~~~~~~~~l~~-~~G~~v~~ 285 (365) T cd08277 251 T-GGGVDYSFEC-----TGNA---DLMNEALESTKL-GWGVSVVV 285 (365) T ss_pred h-CCCCCEEEEC-----CCCh---HHHHHHHHhccc-CCCEEEEE Confidence 1 2358888753 2222 157778889988 7 988765 No 382 >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] Probab=40.12 E-value=37 Score=35.67 Aligned_cols=40 Identities=8% Similarity=-0.089 Sum_probs=31.0 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhH Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELS 217 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~ 217 (343) --+.++..|||+||.+|.+..-..+.+|. +-.++|+|..+ T Consensus 40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv-~slivGvDl~p 79 (780) T KOG1098|consen 40 KFLEKAHVVLDLCAAPGGWLQVASQSMPV-GSLIVGVDLVP 79 (780) T ss_pred ccccccchheeeccCCcHHHHHHHHhCCC-CceEEEeeeee Confidence 34677888999999999999988888774 44566777644 No 383 >PRK10537 voltage-gated potassium channel; Provisional Probab=38.71 E-value=1.4e+02 Score=29.72 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=46.0 Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCC--ceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC--CCCceeEE Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPE--NFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG--SGVVYDLI 258 (343) Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~--~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~--~~~~fDlI 258 (343) .+|+= ||.|..+..+++.+... .+.+++-| .. +.. ... ....+.++..+-..+. .-+..+.| T Consensus 241 ~HvII--~G~g~lg~~v~~~L~~~g~~vvVId~d--~~--~~~---~~~-----g~~vI~GD~td~e~L~~AgI~~A~aV 306 (393) T PRK10537 241 DHFII--CGHSPLAINTYLGLRQRGQAVTVIVPL--GL--EHR---LPD-----DADLIPGDSSDSAVLKKAGAARARAI 306 (393) T ss_pred CeEEE--ECCChHHHHHHHHHHHCCCCEEEEECc--hh--hhh---ccC-----CCcEEEeCCCCHHHHHhcCcccCCEE Confidence 45665 56667888888766433 34455533 11 111 111 1234455433322111 12355666 Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) ++. .+++......-...|.+.| +..++... T Consensus 307 I~~-----t~dD~~Nl~ivL~ar~l~p-~~kIIa~v 336 (393) T PRK10537 307 LAL-----RDNDADNAFVVLAAKEMSS-DVKTVAAV 336 (393) T ss_pred EEc-----CCChHHHHHHHHHHHHhCC-CCcEEEEE Confidence 652 2343333345556788889 88887653 No 384 >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. Probab=38.70 E-value=1.1e+02 Score=30.12 Aligned_cols=107 Identities=16% Similarity=0.054 Sum_probs=51.9 Q ss_pred cCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCCCC Q 019282 177 SHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKFGS 251 (343) Q Consensus 177 ~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~~~ 251 (343) ..+.++.+||=.|+| .|..+..+++......+.++ +.+....+.+++. |. .. +......++ .+... T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~--d~~~~r~~~a~~~---Ga---~~-v~~~~~~~~~~~v~~~~~ 251 (393) T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVG--DLNPARLAQARSF---GC---ET-VDLSKDATLPEQIEQILG 251 (393) T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHc---CC---eE-EecCCcccHHHHHHHHcC Confidence 567788888888775 34444455555443223333 3333344444432 22 11 111000111 11112 Q ss_pred CCceeEEEEcccccc------CCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 252 GVVYDLIYASAVFLH------MPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 252 ~~~fDlIvs~~v~~h------l~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ...+|+|+-.-.-.. .........++...+++++ ||++++. T Consensus 252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~i~~~ 298 (393) T TIGR02819 252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRV-GGAIGIP 298 (393) T ss_pred CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhC-CCEEEEe Confidence 235888875322110 0000111268889999999 9999874 No 385 >cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone Probab=38.48 E-value=1.2e+02 Score=27.60 Aligned_cols=99 Identities=19% Similarity=0.261 Sum_probs=51.8 Q ss_pred HhcCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CC Q 019282 175 EASHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TK 248 (343) Q Consensus 175 ~~~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~ 248 (343) +...+.++.+||=.|+ +.|..+..+++..+ ..++.++.+......+++. +. . ..+.....++ .. T Consensus 130 ~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g---~~v~~~~~~~~~~~~~~~~---g~---~-~~~~~~~~~~~~~~~~ 199 (320) T cd05286 130 ETYPVKPGDTVLVHAAAGGVGLLLTQWAKALG---ATVIGTVSSEEKAELARAA---GA---D-HVINYRDEDFVERVRE 199 (320) T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHcC---CEEEEEcCCHHHHHHHHHC---CC---C-EEEeCCchhHHHHHHH Confidence 3356778889998884 35556666666543 3444444444444433321 21 1 1111111111 11 Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ......+|+|+.. .+.. .+....+.|++ +|+++.. T Consensus 200 ~~~~~~~d~vl~~-----~~~~----~~~~~~~~l~~-~g~~v~~ 234 (320) T cd05286 200 ITGGRGVDVVYDG-----VGKD----TFEGSLDSLRP-RGTLVSF 234 (320) T ss_pred HcCCCCeeEEEEC-----CCcH----hHHHHHHhhcc-CcEEEEE Confidence 1123468988753 2222 46678889999 9998754 No 386 >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed Probab=37.29 E-value=1.6e+02 Score=29.09 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=21.9 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCc--eEEEEcChh Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPEN--FHCLERDEL 216 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~--~~vvdid~s 216 (343) ..+|+=+|+ |.++..+++.+...+ +++++.++. T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~ 265 (453) T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPE 265 (453) T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHH Confidence 567888777 668888888775544 445554543 No 387 >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim Probab=36.78 E-value=3e+02 Score=26.37 Aligned_cols=100 Identities=10% Similarity=0.110 Sum_probs=50.6 Q ss_pred HhcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC--Cc----C Q 019282 175 EASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM--DF----T 247 (343) Q Consensus 175 ~~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~--dl----~ 247 (343) +...++++.+||=+|+| .|..+..+++..+...+.+++.+. ...+.++++ +. . . .+..... ++ . T Consensus 180 ~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~--~~~~~~~~l---Ga-~-~--~i~~~~~~~~~~~~v~ 250 (368) T cd08300 180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINP--DKFELAKKF---GA-T-D--CVNPKDHDKPIQQVLV 250 (368) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH--HHHHHHHHc---CC-C-E--EEcccccchHHHHHHH Confidence 33567889999999874 333444455544322344444443 444444432 21 1 1 1111110 11 1 Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCC-cEEEEE Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYD-GRIFVS 293 (343) Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~G-G~lvi~ 293 (343) .. ..+.+|+|+-. .+.. ..+....+.+++ + |+++.. T Consensus 251 ~~-~~~g~d~vid~-----~g~~---~~~~~a~~~l~~-~~G~~v~~ 287 (368) T cd08300 251 EM-TDGGVDYTFEC-----IGNV---KVMRAALEACHK-GWGTSVII 287 (368) T ss_pred HH-hCCCCcEEEEC-----CCCh---HHHHHHHHhhcc-CCCeEEEE Confidence 11 12368888753 2222 157778889988 7 888764 No 388 >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. Probab=36.61 E-value=80 Score=28.94 Aligned_cols=56 Identities=13% Similarity=0.026 Sum_probs=33.3 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC--CceEEEEcChhHHHHH Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP--ENFHCLERDELSLMAA 221 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~--~~~~vvdid~s~~~~a 221 (343) ..++++.....+.-..+..+-|=.||.|.+.--+.-.... .++.+.|||...+..+ T Consensus 36 AsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA 93 (246) T PF11599_consen 36 ASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELA 93 (246) T ss_dssp HHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHH T ss_pred HHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHH Confidence 4455555543333344568999999999987765432221 4577888998877655 No 389 >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( Probab=36.47 E-value=1.2e+02 Score=28.64 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=49.2 Q ss_pred cCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC----cCCCCC Q 019282 177 SHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD----FTKFGS 251 (343) Q Consensus 177 ~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d----l~~~~~ 251 (343) ..+.++.+||=.|+| .|..+..+++..+...+.+++. +......+++. +. + . ++.....+ +..... T Consensus 162 ~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~---g~-~-~--~v~~~~~~~~~~i~~~~~ 232 (345) T cd08286 162 GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDL--DDNRLEVAKKL---GA-T-H--TVNSAKGDAIEQVLELTD 232 (345) T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHh---CC-C-c--eeccccccHHHHHHHHhC Confidence 456778888777764 2333344455444233444443 33333333322 21 1 1 11111111 111112 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ...+|+|+.. ++... .+..+.+.|++ +|+++.. T Consensus 233 ~~~~d~vld~-----~g~~~---~~~~~~~~l~~-~g~~v~~ 265 (345) T cd08286 233 GRGVDVVIEA-----VGIPA---TFELCQELVAP-GGHIANV 265 (345) T ss_pred CCCCCEEEEC-----CCCHH---HHHHHHHhccC-CcEEEEe Confidence 3468988753 23222 56788899999 9998754 No 390 >cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Probab=36.37 E-value=1.4e+02 Score=28.19 Aligned_cols=98 Identities=15% Similarity=0.239 Sum_probs=49.2 Q ss_pred CCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc---CCCCCCC Q 019282 178 HITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF---TKFGSGV 253 (343) Q Consensus 178 ~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl---~~~~~~~ 253 (343) ...++.+||-.|+|. |..+..+++..+...+.+ ++.+......+.+. +. . . .+.....++ ......+ T Consensus 160 ~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~--~~~~~~~~~~~~~~---g~-~-~--~~~~~~~~~~~~~~~~~~~ 230 (341) T cd05281 160 GDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIA--SDPNPYRLELAKKM---GA-D-V--VINPREEDVVEVKSVTDGT 230 (341) T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEE--ECCCHHHHHHHHHh---Cc-c-e--eeCcccccHHHHHHHcCCC Confidence 345778888887754 555566666543223333 34443333333322 11 0 1 111011111 1111234 Q ss_pred ceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 254 VYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 254 ~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .+|+|+..- ... ..+..+.+.|++ +|+++.. T Consensus 231 ~vd~vld~~-----g~~---~~~~~~~~~l~~-~G~~v~~ 261 (341) T cd05281 231 GVDVVLEMS-----GNP---KAIEQGLKALTP-GGRVSIL 261 (341) T ss_pred CCCEEEECC-----CCH---HHHHHHHHHhcc-CCEEEEE Confidence 688887632 111 146778899999 9998764 No 391 >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] Probab=36.16 E-value=1.1e+02 Score=28.77 Aligned_cols=90 Identities=21% Similarity=0.222 Sum_probs=51.1 Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCc--eEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPEN--FHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343) Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~--~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343) .+|+=+| .|.++..+++.+...+ ..++|.|.+....+.+..+ +..+... .+.. .......|+|+. T Consensus 4 ~~v~IvG--~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l---gv~d~~~-------~~~~-~~~~~~aD~Viv 70 (279) T COG0287 4 MKVGIVG--LGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL---GVIDELT-------VAGL-AEAAAEADLVIV 70 (279) T ss_pred cEEEEEC--CchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc---Ccccccc-------cchh-hhhcccCCEEEE Confidence 4566676 5556666666554444 3468888877666544321 2211100 0110 112346799887 Q ss_pred ccccccCCchHHHHHHHHHHhccCCCCcEEEE Q 019282 261 SAVFLHMPDKLVWVGLERLASKLRPYDGRIFV 292 (343) Q Consensus 261 ~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi 292 (343) . +|-.....+++++...|+| |.++. T Consensus 71 a-----vPi~~~~~~l~~l~~~l~~--g~iv~ 95 (279) T COG0287 71 A-----VPIEATEEVLKELAPHLKK--GAIVT 95 (279) T ss_pred e-----ccHHHHHHHHHHhcccCCC--CCEEE Confidence 4 5555666789999999998 44443 No 392 >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] Probab=36.08 E-value=33 Score=35.00 Aligned_cols=106 Identities=11% Similarity=0.008 Sum_probs=60.7 Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCC-ceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC--cCCCCCCCce Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPE-NFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD--FTKFGSGVVY 255 (343) Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~-~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d--l~~~~~~~~f 255 (343) ..++.+|||.=|++|.-++..+..++.. .+..-|.++.....- +++.+.+.....+.....++.- +........| T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i--~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525) T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSI--QRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFF 184 (525) T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHH--HhhhhhcCchhhcccccchHHHHHHhcccccccc Confidence 4567799999999999999999888653 233444444443322 2222222111122111111111 1112234689 Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) |+|=.- =.+.+.. +|+...+.+.. ||.|+++ T Consensus 185 DvIDLD----PyGs~s~--FLDsAvqav~~-gGLL~vT 215 (525) T KOG1253|consen 185 DVIDLD----PYGSPSP--FLDSAVQAVRD-GGLLCVT 215 (525) T ss_pred ceEecC----CCCCccH--HHHHHHHHhhc-CCEEEEE Confidence 988432 1122333 89999999999 9999987 No 393 >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] Probab=35.69 E-value=71 Score=32.53 Aligned_cols=110 Identities=21% Similarity=0.196 Sum_probs=68.2 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCC-CCCCc Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKF-GSGVV 254 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~-~~~~~ 254 (343) ..+..+|=||-|.|.+...+...++...++++.+|++.+..+....-..+... .++..-.| .++ ... ..+.. T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r-~~V~i~dG--l~~~~~~~k~~~~~~~ 370 (482) T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDR-NKVHIADG--LDFLQRTAKSQQEDIC 370 (482) T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhh-hhhhHhhc--hHHHHHHhhccccccC Confidence 34567899999999999999988998999999999988876633211111110 11211111 111 111 13457 Q ss_pred eeEEEEc---cccccC--Cc--hHHHHHHHHHHhccCCCCcEEEEE Q 019282 255 YDLIYAS---AVFLHM--PD--KLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 255 fDlIvs~---~v~~hl--~~--~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ||++..- --.|-+ +. .-...+|..++..|.| -|.+.|. T Consensus 371 ~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p-~g~f~in 415 (482) T KOG2352|consen 371 PDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPP-RGMFIIN 415 (482) T ss_pred CcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCc-cceEEEE Confidence 8988751 112222 22 2345689999999999 9999775 No 394 >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi Probab=35.65 E-value=1.1e+02 Score=29.76 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=22.7 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ...+|+|+.. .+.... .+....+.|++ +|+++.. T Consensus 273 g~gvDvvld~-----~g~~~~--~~~~~~~~l~~-~G~~v~~ 306 (384) T cd08265 273 GWGADIQVEA-----AGAPPA--TIPQMEKSIAI-NGKIVYI 306 (384) T ss_pred CCCCCEEEEC-----CCCcHH--HHHHHHHHHHc-CCEEEEE Confidence 3468988753 222212 56778888999 9998754 No 395 >PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed Probab=35.59 E-value=1e+02 Score=27.00 Aligned_cols=32 Identities=25% Similarity=0.230 Sum_probs=23.1 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) .+..|++++.... .+.+....|+| ||.+++.. T Consensus 65 ~~~~D~lva~d~~----------~~~~~~~~l~~-gg~ii~ns 96 (197) T PRK06274 65 EGQADLLLALEPA----------EVARNLHFLKK-GGKIIVNA 96 (197) T ss_pred CCCCCEEEEcCHH----------HHHHHHhhcCC-CcEEEEEC Confidence 4688999986433 23456678999 99988764 No 396 >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... Probab=35.14 E-value=53 Score=27.08 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=27.0 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) .+.||+|+.. +........++.+.+.+.| +..+++.. T Consensus 65 ~~~~D~viv~-----vKa~~~~~~l~~l~~~~~~-~t~iv~~q 101 (151) T PF02558_consen 65 AGPYDLVIVA-----VKAYQLEQALQSLKPYLDP-NTTIVSLQ 101 (151) T ss_dssp HSTESEEEE------SSGGGHHHHHHHHCTGEET-TEEEEEES T ss_pred cCCCcEEEEE-----ecccchHHHHHHHhhccCC-CcEEEEEe Confidence 4689999874 4444555689999999999 87776654 No 397 >PRK13403 ketol-acid reductoisomerase; Provisional Probab=34.19 E-value=1e+02 Score=29.96 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=51.3 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343) .+++|-=||+|. .+...++.+...++.++..+......+.+.. .+. .. .++.+. -...|+|+. T Consensus 15 kgKtVGIIG~Gs--IG~amA~nL~d~G~~ViV~~r~~~s~~~A~~---~G~-----~v-----~sl~Ea--ak~ADVV~l 77 (335) T PRK13403 15 QGKTVAVIGYGS--QGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA---DGF-----EV-----MSVSEA--VRTAQVVQM 77 (335) T ss_pred CcCEEEEEeEcH--HHHHHHHHHHHCcCEEEEEECcchhhHHHHH---cCC-----EE-----CCHHHH--HhcCCEEEE Confidence 467888887754 6666666665566666544322222221211 121 10 122222 235688877 Q ss_pred ccccccCCchHHHHHH-HHHHhccCCCCcEEEEEe Q 019282 261 SAVFLHMPDKLVWVGL-ERLASKLRPYDGRIFVSH 294 (343) Q Consensus 261 ~~v~~hl~~~~~~~~L-~~l~r~LkP~GG~lvi~~ 294 (343) |+|++....++ +.+...||| |..|+++| T Consensus 78 -----lLPd~~t~~V~~~eil~~MK~-GaiL~f~h 106 (335) T PRK13403 78 -----LLPDEQQAHVYKAEVEENLRE-GQMLLFSH 106 (335) T ss_pred -----eCCChHHHHHHHHHHHhcCCC-CCEEEECC Confidence 45554444455 579999999 88888875 No 398 >PF15013 CCSMST1: CCSMST1 family Probab=33.06 E-value=30 Score=26.14 Aligned_cols=17 Identities=35% Similarity=0.692 Sum_probs=13.8 Q ss_pred hHHHHHHHHHHHHHHHh Q 019282 19 VLVLTLSVAAIFFFFLL 35 (343) Q Consensus 19 ~~~~~~~~~~~~~~~~~ 35 (343) ++++++|+++++++|.. T Consensus 33 ~~~is~sl~~fliyFC~ 49 (77) T PF15013_consen 33 VYPISLSLAAFLIYFCF 49 (77) T ss_pred eehhHHHHHHHHHHHhh Confidence 57888899999888754 No 399 >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone Probab=32.96 E-value=1.5e+02 Score=27.23 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=49.3 Q ss_pred hcCCCCCCeEEEEcCC--cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCC Q 019282 176 ASHITPNSHVLEIGCG--TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKF 249 (343) Q Consensus 176 ~~~l~~~~rVLDIGCG--tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~ 249 (343) ...+.++.+||-.|.+ .|..+..++...+ ..+.+++ .+......+... +. . ..+.....++ ... T Consensus 161 ~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g-~~v~~~~--~~~~~~~~~~~~---~~---~-~~~~~~~~~~~~~~~~~ 230 (342) T cd08266 161 RARLRPGETVLVHGAGSGVGSAAIQIAKLFG-ATVIATA--GSEDKLERAKEL---GA---D-YVIDYRKEDFVREVREL 230 (342) T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEe--CCHHHHHHHHHc---CC---C-eEEecCChHHHHHHHHH Confidence 3567788899988875 4555555555433 2334444 333333333221 11 1 1111111111 101 Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .....+|+++.... .. .+..+.+.+++ +|.++.. T Consensus 231 ~~~~~~d~~i~~~g-----~~----~~~~~~~~l~~-~G~~v~~ 264 (342) T cd08266 231 TGKRGVDVVVEHVG-----AA----TWEKSLKSLAR-GGRLVTC 264 (342) T ss_pred hCCCCCcEEEECCc-----HH----HHHHHHHHhhc-CCEEEEE Confidence 12346888876432 21 46677888999 9998754 No 400 >PRK05396 tdh L-threonine 3-dehydrogenase; Validated Probab=32.85 E-value=1.4e+02 Score=28.18 Aligned_cols=96 Identities=14% Similarity=0.155 Sum_probs=49.4 Q ss_pred CCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC----cCCCCCCCc Q 019282 180 TPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD----FTKFGSGVV 254 (343) Q Consensus 180 ~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d----l~~~~~~~~ 254 (343) .++.+||=.|+|. |..+..+++..+...+.++ +.+.......+++ +. . ..+.....+ +........ T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~l---g~---~-~~~~~~~~~~~~~~~~~~~~~~ 232 (341) T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKM---GA---T-RAVNVAKEDLRDVMAELGMTEG 232 (341) T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHh---CC---c-EEecCccccHHHHHHHhcCCCC Confidence 4677888887764 5555666665543334444 3333333333332 11 0 111111111 111212346 Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +|+|+.... .. ..+..+.+.|++ +|.++.. T Consensus 233 ~d~v~d~~g-----~~---~~~~~~~~~l~~-~G~~v~~ 262 (341) T PRK05396 233 FDVGLEMSG-----AP---SAFRQMLDNMNH-GGRIAML 262 (341) T ss_pred CCEEEECCC-----CH---HHHHHHHHHHhc-CCEEEEE Confidence 888876321 11 157788899999 9998775 No 401 >PLN02256 arogenate dehydrogenase Probab=32.45 E-value=2.1e+02 Score=27.18 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=23.9 Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhH Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELS 217 (343) Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~ 217 (343) +.+..+-....+|.=||+| .++..++..+...+..++.++.+. T Consensus 27 ~~~~~~~~~~~kI~IIG~G--~mG~slA~~L~~~G~~V~~~d~~~ 69 (304) T PLN02256 27 LQEELEKSRKLKIGIVGFG--NFGQFLAKTFVKQGHTVLATSRSD 69 (304) T ss_pred HhHhhccCCCCEEEEEeeC--HHHHHHHHHHHhCCCEEEEEECcc Confidence 3344455566789889875 455555555433444444444443 No 402 >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional Probab=32.23 E-value=2.1e+02 Score=25.04 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=23.5 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhH Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELS 217 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~ 217 (343) +.+||=.|++ |.++..+++.+...++.++.++.+. T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238) T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNE 39 (238) T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCH Confidence 5688888885 6777777776655565566555443 No 403 >TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. Probab=32.18 E-value=1.1e+02 Score=30.02 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=19.9 Q ss_pred CCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChh Q 019282 181 PNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDEL 216 (343) Q Consensus 181 ~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s 216 (343) ++.+|+=||+| .|..+...+..++. .+++++.+.. T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~ 201 (370) T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINID 201 (370) T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHH Confidence 34679999887 34444444444432 4566665543 No 404 >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] Probab=31.73 E-value=1.2e+02 Score=29.60 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=31.8 Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcC-CcCHHHHHHHHHcCCCceEEEEcChhH Q 019282 167 RDVFEFLAEASHITPNSHVLEIGC-GTLRVGVHFIRYLNPENFHCLERDELS 217 (343) Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGC-GtG~~a~~la~~~~~~~~~vvdid~s~ 217 (343) -.+|..|.+ .++.||.+|-=+|- |-|.++..++++. +..++.+|.+. T Consensus 168 ITvYspLk~-~g~~pG~~vgI~GlGGLGh~aVq~AKAM---G~rV~vis~~~ 215 (360) T KOG0023|consen 168 ITVYSPLKR-SGLGPGKWVGIVGLGGLGHMAVQYAKAM---GMRVTVISTSS 215 (360) T ss_pred eEEeehhHH-cCCCCCcEEEEecCcccchHHHHHHHHh---CcEEEEEeCCc Confidence 344565654 46778988666653 4888888888874 55677777664 No 405 >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Probab=31.62 E-value=1.8e+02 Score=26.61 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=51.3 Q ss_pred cCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC----cCCCC Q 019282 177 SHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD----FTKFG 250 (343) Q Consensus 177 ~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d----l~~~~ 250 (343) ..+.++.+||=.|+ +.|..+..+++..+ +.++.+..+........+. +. ...+. . ..+ +... T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g---~~v~~~~~~~~~~~~~~~~---g~---~~~~~-~-~~~~~~~i~~~- 205 (320) T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALG---ATVTATTRSPERAALLKEL---GA---DEVVI-D-DGAIAEQLRAA- 205 (320) T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHhc---CC---cEEEe-c-CccHHHHHHHh- Confidence 45677889998886 46666666776543 3344444333333333221 21 11111 1 111 1112 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ...+|+|+.. .+.. .+..+.+.|++ +|+++.. T Consensus 206 -~~~~d~vl~~-----~~~~----~~~~~~~~l~~-~g~~v~~ 237 (320) T cd08243 206 -PGGFDKVLEL-----VGTA----TLKDSLRHLRP-GGIVCMT 237 (320) T ss_pred -CCCceEEEEC-----CChH----HHHHHHHHhcc-CCEEEEE Confidence 3468888753 2222 57788899999 9998754 No 406 >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... Probab=31.38 E-value=2.2e+02 Score=26.33 Aligned_cols=121 Identities=16% Similarity=0.123 Sum_probs=60.9 Q ss_pred eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC---CCCceeEEEE Q 019282 184 HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG---SGVVYDLIYA 260 (343) Q Consensus 184 rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~---~~~~fDlIvs 260 (343) +++|+=||-|.+..-+.... -..+..+++|+.....-..+ .. ....+ |+.+.. ..+.+|+++. T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N------~~----~~~~~---Di~~~~~~~l~~~~D~l~g 67 (335) T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKAN------FP----EVICG---DITEIDPSDLPKDVDLLIG 67 (335) T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHH------HT----EEEES---HGGGCHHHHHHHT-SEEEE T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhc------cc----ccccc---cccccccccccccceEEEe Confidence 79999999999999887732 12234566776543333221 11 22222 332221 1114899987 Q ss_pred ccccccC---C------ch--HHHHHHHHHHhccCCCCcEEEEEeccccccCCC---HHHHHHHHHhcCCcEEE Q 019282 261 SAVFLHM---P------DK--LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG---GEECTKRLTSLGLEYIG 320 (343) Q Consensus 261 ~~v~~hl---~------~~--~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~---~~~l~~~L~~aGf~~v~ 320 (343) ..-..-+ + ++ .+---+-++.+.++| -.+++..-..+..... -+.+.+.|++.||.+.. T Consensus 68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~P--k~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~ 139 (335) T PF00145_consen 68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKP--KYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQW 139 (335) T ss_dssp E---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS---SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEE T ss_pred ccCCceEeccccccccccccchhhHHHHHHHhhccc--eEEEecccceeeccccccccccccccccccceeehh Confidence 5332211 1 11 111134445566788 5566653223332211 57788889999997653 No 407 >PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis []. Probab=31.34 E-value=56 Score=21.46 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=10.0 Q ss_pred cceEEEehhHHHHHHHH Q 019282 11 KGIVITVPVLVLTLSVA 27 (343) Q Consensus 11 ~~~~~~~~~~~~~~~~~ 27 (343) -|+-+.||+.|+.+.+. T Consensus 13 Ia~~VvVPV~vI~~vl~ 29 (40) T PF08693_consen 13 IAVGVVVPVGVIIIVLG 29 (40) T ss_pred EEEEEEechHHHHHHHH Confidence 34556678877654443 No 408 >PRK07417 arogenate dehydrogenase; Reviewed Probab=31.05 E-value=1.7e+02 Score=27.11 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=21.4 Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEE Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRI 290 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~l 290 (343) ...|+|+.. ++......+++++...++| +-.+ T Consensus 56 ~~aDlVila-----vp~~~~~~~~~~l~~~l~~-~~ii 87 (279) T PRK07417 56 KDCDLVILA-----LPIGLLLPPSEQLIPALPP-EAIV 87 (279) T ss_pred cCCCEEEEc-----CCHHHHHHHHHHHHHhCCC-CcEE Confidence 356888774 4555555678888888887 5333 No 409 >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu Probab=30.64 E-value=1.5e+02 Score=28.37 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=49.0 Q ss_pred cCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCCCC Q 019282 177 SHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKFGS 251 (343) Q Consensus 177 ~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~~~ 251 (343) ..+.++.+||=.|+| .|..+..+++..+...+.+++-+ .......++. +. ..++..+..++ ..... T Consensus 183 ~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s--~~~~~~~~~~---g~----~~v~~~~~~~~~~~l~~~~~ 253 (367) T cd08263 183 ADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVR--DEKLAKAKEL---GA----THTVNAAKEDAVAAIREITG 253 (367) T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHh---CC----ceEecCCcccHHHHHHHHhC Confidence 345678888877654 44444455554432224444433 3333333221 11 11111111111 11112 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +..+|+|+.. ++.. ..+..+.+.|++ +|+++.. T Consensus 254 ~~~~d~vld~-----vg~~---~~~~~~~~~l~~-~G~~v~~ 286 (367) T cd08263 254 GRGVDVVVEA-----LGKP---ETFKLALDVVRD-GGRAVVV 286 (367) T ss_pred CCCCCEEEEe-----CCCH---HHHHHHHHHHhc-CCEEEEE Confidence 3468988753 3322 146778899999 9998764 No 410 >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha Probab=30.61 E-value=3.8e+02 Score=24.81 Aligned_cols=95 Identities=11% Similarity=0.052 Sum_probs=49.5 Q ss_pred HhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCc Q 019282 175 EASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVV 254 (343) Q Consensus 175 ~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~ 254 (343) +...+.++.+||=.||| .++..+++.....+..++.++.+......+++. +. . ..+. .... ..+. T Consensus 161 ~~~~~~~~~~vlV~g~g--~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~---g~---~-~~~~-----~~~~-~~~~ 225 (329) T cd08298 161 KLAGLKPGQRLGLYGFG--ASAHLALQIARYQGAEVFAFTRSGEHQELAREL---GA---D-WAGD-----SDDL-PPEP 225 (329) T ss_pred HhhCCCCCCEEEEECCc--HHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh---CC---c-EEec-----cCcc-CCCc Confidence 34567788888888765 444444332222344455444444444433221 21 1 1111 1111 2345 Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +|+++.... .. ..++.+.+.|++ +|+++.. T Consensus 226 vD~vi~~~~-----~~---~~~~~~~~~l~~-~G~~v~~ 255 (329) T cd08298 226 LDAAIIFAP-----VG---ALVPAALRAVKK-GGRVVLA 255 (329) T ss_pred ccEEEEcCC-----cH---HHHHHHHHHhhc-CCEEEEE Confidence 787764311 11 267889999999 9998864 No 411 >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... Probab=30.49 E-value=85 Score=27.24 Aligned_cols=94 Identities=19% Similarity=0.162 Sum_probs=47.4 Q ss_pred CCC-eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCC-CCCcEEEecccCCcCCCC-------- Q 019282 181 PNS-HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLL-HKRPIIVRGEDMDFTKFG-------- 250 (343) Q Consensus 181 ~~~-rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~-~~~~~~~~~~~~dl~~~~-------- 250 (343) ++. .|+.+|||-=.....+.... .++.++++|........++...+.+.. .....++.. |+.+.. T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~--~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~---Dl~~~~~~~~L~~~ 151 (183) T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPA--GGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPA---DLRDDSWIDALPKA 151 (183) T ss_dssp TTESEEEEET-TT--HHHHHHHTT--TTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES----TTSHHHHHHHHHC T ss_pred CCCcEEEEcCCCCCchHHHhhccc--cceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEec---cccchhhHHHHHHh Confidence 444 89999999866666665422 278899999887666554433222111 001122322 322110 Q ss_pred --CCCceeEEEEccccccCCchHHHHHHHHH Q 019282 251 --SGVVYDLIYASAVFLHMPDKLVWVGLERL 279 (343) Q Consensus 251 --~~~~fDlIvs~~v~~hl~~~~~~~~L~~l 279 (343) ..+.--++++-.++.+++......+|+.+ T Consensus 152 g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183) T PF04072_consen 152 GFDPDRPTLFIAEGVLMYLSPEQVDALLRAI 182 (183) T ss_dssp TT-TTSEEEEEEESSGGGS-HHHHHHHHHHH T ss_pred CCCCCCCeEEEEcchhhcCCHHHHHHHHHHh Confidence 12344566666677777776665555544 No 412 >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] Probab=30.46 E-value=1.6e+02 Score=28.85 Aligned_cols=105 Identities=10% Similarity=0.097 Sum_probs=58.0 Q ss_pred HHhcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcE-EEecccCCcCCCCC Q 019282 174 AEASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPI-IVRGEDMDFTKFGS 251 (343) Q Consensus 174 ~~~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~-~~~~~~~dl~~~~~ 251 (343) ......+++..|-=+||| -|..+++-+.......+.++|+.+..+.. ++++......+.... -+.....++. T Consensus 178 ~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~--A~~fGAT~~vn~~~~~~vv~~i~~~T---- 251 (366) T COG1062 178 VNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLEL--AKKFGATHFVNPKEVDDVVEAIVELT---- 251 (366) T ss_pred hhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHH--HHhcCCceeecchhhhhHHHHHHHhc---- Confidence 334678999999999997 45555555665565666666666655444 465543222111100 0000001111 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ++..|.+ |+...... .++.....+.+ +|..++. T Consensus 252 ~gG~d~~-----~e~~G~~~---~~~~al~~~~~-~G~~v~i 284 (366) T COG1062 252 DGGADYA-----FECVGNVE---VMRQALEATHR-GGTSVII 284 (366) T ss_pred CCCCCEE-----EEccCCHH---HHHHHHHHHhc-CCeEEEE Confidence 2234444 33344433 68888889999 9998775 No 413 >PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length. Probab=30.41 E-value=19 Score=28.27 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=12.6 Q ss_pred EEEEcCCcCHHHHHHHH Q 019282 185 VLEIGCGTLRVGVHFIR 201 (343) Q Consensus 185 VLDIGCGtG~~a~~la~ 201 (343) =+|||||.|.......+ T Consensus 6 NIDIGcG~GNTmda~fR 22 (124) T PF07101_consen 6 NIDIGCGAGNTMDAAFR 22 (124) T ss_pred ccccccCCCcchhhhhh Confidence 36999999987655444 No 414 >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). Probab=30.28 E-value=2e+02 Score=26.75 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=32.8 Q ss_pred ceeEEEEccccccCCc-hHHHHHH---HHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE Q 019282 254 VYDLIYASAVFLHMPD-KLVWVGL---ERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343) Q Consensus 254 ~fDlIvs~~v~~hl~~-~~~~~~L---~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343) ..|+|+.. +++ .....++ +.+...+++ |.+++.... ...-...++.+.+++.|..++. T Consensus 52 ~advVil~-----vp~~~~~~~v~~g~~~l~~~~~~--g~~vid~st--~~p~~~~~~~~~~~~~g~~~vd 113 (288) T TIGR01692 52 GADRVITM-----LPAGQHVISVYSGDEGILPKVAK--GSLLIDCST--IDPDSARKLAELAAAHGAVFMD 113 (288) T ss_pred cCCEEEEe-----CCChHHHHHHHcCcchHhhcCCC--CCEEEECCC--CCHHHHHHHHHHHHHcCCcEEE Confidence 46887763 444 2233455 567777887 555554321 1111145677778888887766 No 415 >PF15018 InaF-motif: TRP-interacting helix Probab=29.88 E-value=29 Score=22.52 Aligned_cols=19 Identities=37% Similarity=0.520 Sum_probs=15.0 Q ss_pred EEEehhHHHHHHHHHHHHH Q 019282 14 VITVPVLVLTLSVAAIFFF 32 (343) Q Consensus 14 ~~~~~~~~~~~~~~~~~~~ 32 (343) ++||-.-++++|.+|+++- T Consensus 7 ~~tV~~Yl~~VSl~Ai~Ls 25 (38) T PF15018_consen 7 VLTVVAYLFSVSLAAIVLS 25 (38) T ss_pred eHHHHHHHHHHHHHHHHHH Confidence 4677778899999998763 No 416 >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall Probab=29.42 E-value=2.1e+02 Score=27.39 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=49.5 Q ss_pred HhcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC--C----cC Q 019282 175 EASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM--D----FT 247 (343) Q Consensus 175 ~~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~--d----l~ 247 (343) ...++.++.+||=+|+| .|..+..+++..+...+.+++.+ ........+.. . . . ++..... + +. T Consensus 177 ~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~--~~~~~~~~~~g---~-~-~--~v~~~~~~~~~~~~l~ 247 (365) T cd05279 177 NTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDIN--KDKFEKAKQLG---A-T-E--CINPRDQDKPIVEVLT 247 (365) T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHhC---C-C-e--ecccccccchHHHHHH Confidence 34577888899988764 23333444454432223343333 33333333321 1 0 1 1111111 1 11 Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccC-CCCcEEEEE Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLR-PYDGRIFVS 293 (343) Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~Lk-P~GG~lvi~ 293 (343) ... .+.+|+|+-. .+.. ..+....+.|+ + +|+++.. T Consensus 248 ~~~-~~~~d~vid~-----~g~~---~~~~~~~~~l~~~-~G~~v~~ 284 (365) T cd05279 248 EMT-DGGVDYAFEV-----IGSA---DTLKQALDATRLG-GGTSVVV 284 (365) T ss_pred HHh-CCCCcEEEEC-----CCCH---HHHHHHHHHhccC-CCEEEEE Confidence 111 2468888753 2221 15777888899 9 9998764 No 417 >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed Probab=29.29 E-value=2.6e+02 Score=26.28 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=33.4 Q ss_pred eeEEEEccccccCCch-HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE Q 019282 255 YDLIYASAVFLHMPDK-LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343) Q Consensus 255 fDlIvs~~v~~hl~~~-~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343) .|+|+. .+++. ....++..+...++| |.++|..... ..-...++.+.+++.|..++. T Consensus 60 advVi~-----~vp~~~~~~~v~~~i~~~l~~--g~ivid~st~--~~~~~~~~~~~~~~~g~~~vd 117 (299) T PRK12490 60 PRTIWV-----MVPAGEVTESVIKDLYPLLSP--GDIVVDGGNS--RYKDDLRRAEELAERGIHYVD 117 (299) T ss_pred CCEEEE-----EecCchHHHHHHHHHhccCCC--CCEEEECCCC--CchhHHHHHHHHHHcCCeEEe Confidence 477765 34443 555577888888887 4555543111 011245666778888876665 No 418 >TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Probab=29.08 E-value=4.5e+02 Score=25.00 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=21.8 Q ss_pred EEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHH Q 019282 185 VLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL 218 (343) Q Consensus 185 VLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~ 218 (343) |+|+=||.|.+..-+... .-.-+..++++.... T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~ 33 (315) T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQ 33 (315) T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHH Confidence 689999999999988763 112233456665443 No 419 >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. Probab=28.64 E-value=1.4e+02 Score=29.61 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=28.5 Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHH Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLM 219 (343) Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~ 219 (343) .+++.++.+||-|..| |..++.++.. ++..++++|+++.... T Consensus 30 aL~i~~~d~vl~ItSa-G~N~L~yL~~-~P~~I~aVDlNp~Q~a 71 (380) T PF11899_consen 30 ALNIGPDDRVLTITSA-GCNALDYLLA-GPKRIHAVDLNPAQNA 71 (380) T ss_pred HhCCCCCCeEEEEccC-CchHHHHHhc-CCceEEEEeCCHHHHH Confidence 3689999999999554 5555555442 3467778877776554 No 420 >KOG2811 consensus Uncharacterized conserved protein [Function unknown] Probab=28.42 E-value=1.4e+02 Score=29.60 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=29.2 Q ss_pred HHHHHHHhcCCC-CCCeEEEEcCCcCHHHHHHHHHcCCCceEE Q 019282 169 VFEFLAEASHIT-PNSHVLEIGCGTLRVGVHFIRYLNPENFHC 210 (343) Q Consensus 169 ~~~~l~~~~~l~-~~~rVLDIGCGtG~~a~~la~~~~~~~~~v 210 (343) ++..|...-.+. ++..+.|+|||-|.++.++...+....++. T Consensus 169 llg~lE~~~~l~~~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l 211 (420) T KOG2811|consen 169 LLGHLEELGLLTAPSSCFVEFGAGRGELSRWVSDCLQIQNVYL 211 (420) T ss_pred HHhHHHhccccCCCcceEEEecCCchHHHHHHHHHhccccEEE Confidence 334444332333 336899999999999999999887666554 No 421 >PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts. Probab=27.80 E-value=1.3e+02 Score=24.78 Aligned_cols=16 Identities=13% Similarity=0.015 Sum_probs=12.9 Q ss_pred cCCCCCHHHHHHHHHH Q 019282 80 ERTSATKEDIEWVRDQ 95 (343) Q Consensus 80 ~~~~~~~~~~~~~~~~ 95 (343) ...|+.||.++.++-- T Consensus 96 ~~~PIDP~VIaAIHHw 111 (122) T PF04530_consen 96 APVPIDPEVIAAIHHW 111 (122) T ss_pred CCCCCCHHHHHHHHHH Confidence 4489999999988753 No 422 >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). Probab=27.51 E-value=4e+02 Score=22.93 Aligned_cols=110 Identities=11% Similarity=0.080 Sum_probs=61.7 Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecc-cCC Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGE-DMD 245 (343) Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~-~~d 245 (343) +.+.+.+.+. ..++.+|+=|||=+-...+.- ...+.......|+|..-.. ...+.-.+.+.+ ... T Consensus 13 ~~l~~~l~~~--~~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~-----------~~~~~F~fyD~~~p~~ 78 (162) T PF10237_consen 13 EFLARELLDG--ALDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQ-----------FGGDEFVFYDYNEPEE 78 (162) T ss_pred HHHHHHHHHh--cCCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHh-----------cCCcceEECCCCChhh Confidence 3444545432 335679999999885443322 1234567788888873221 111001122111 011 Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343) Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343) ++.. ..++||+|++---| +..+-+..+.+.+.-++|+ ++.++++. T Consensus 79 ~~~~-l~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~-~~kii~~T 123 (162) T PF10237_consen 79 LPEE-LKGKFDVVVIDPPF--LSEECLTKTAETIRLLLKP-GGKIILCT 123 (162) T ss_pred hhhh-cCCCceEEEECCCC--CCHHHHHHHHHHHHHHhCc-cceEEEec Confidence 2211 25799999998766 5555444456777777788 89988875 No 423 >PLN02494 adenosylhomocysteinase Probab=26.81 E-value=2e+02 Score=29.38 Aligned_cols=100 Identities=13% Similarity=0.152 Sum_probs=52.4 Q ss_pred HHHHHHHHHhcCC-CCCCeEEEEcCCcCHHHHHHHHHcCC--CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc Q 019282 167 RDVFEFLAEASHI-TPNSHVLEIGCGTLRVGVHFIRYLNP--ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED 243 (343) Q Consensus 167 ~~~~~~l~~~~~l-~~~~rVLDIGCGtG~~a~~la~~~~~--~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~ 243 (343) +..++-+.+..++ -.+.+|+=+|+|+ .+..++..+.. ..+.++++++.....+ .. .+. .+ . T Consensus 238 qS~~d~i~r~t~i~LaGKtVvViGyG~--IGr~vA~~aka~Ga~VIV~e~dp~r~~eA--~~---~G~---~v--v---- 301 (477) T PLN02494 238 HSLPDGLMRATDVMIAGKVAVICGYGD--VGKGCAAAMKAAGARVIVTEIDPICALQA--LM---EGY---QV--L---- 301 (477) T ss_pred ccHHHHHHHhcCCccCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhhHHH--Hh---cCC---ee--c---- Confidence 4455556555444 4588999999984 44444443322 3455555555322222 11 122 11 1 Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ++.+. -...|+|+.... .... +..+....||| ||.++.. T Consensus 302 -~leEa--l~~ADVVI~tTG-----t~~v--I~~e~L~~MK~-GAiLiNv 340 (477) T PLN02494 302 -TLEDV--VSEADIFVTTTG-----NKDI--IMVDHMRKMKN-NAIVCNI 340 (477) T ss_pred -cHHHH--HhhCCEEEECCC-----Cccc--hHHHHHhcCCC-CCEEEEc Confidence 11111 135688886322 1211 34778889999 8888765 No 424 >KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones] Probab=26.77 E-value=1.8e+02 Score=28.39 Aligned_cols=41 Identities=27% Similarity=0.614 Sum_probs=23.7 Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc---CCCceEEEEcCh Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL---NPENFHCLERDE 215 (343) Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~---~~~~~~vvdid~ 215 (343) ..+-++++. +.+||-||.| +++..+++.+ +-..++++|+|. T Consensus 31 ~~e~l~~l~-------~~kiLviGAG--GLGCElLKnLal~gF~~~~viDmDT 74 (422) T KOG2015|consen 31 SEENLEFLQ-------DCKILVIGAG--GLGCELLKNLALSGFRQLHVIDMDT 74 (422) T ss_pred CHHHHHHHh-------hCcEEEEccC--cccHHHHHhHHhhccceeEEEeecc Confidence 344555553 2579999765 3455555533 334667777654 No 425 >PTZ00142 6-phosphogluconate dehydrogenase; Provisional Probab=26.65 E-value=2.7e+02 Score=28.38 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=34.4 Q ss_pred ceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEe Q 019282 254 VYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGK 321 (343) Q Consensus 254 ~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~ 321 (343) ..|+|+.. -.+......+++.+...|+| |.++|.....+.. ......+.+.+.|...+.. T Consensus 66 ~~d~Iil~----v~~~~~v~~vi~~l~~~L~~--g~iIID~gn~~~~--dt~~r~~~l~~~Gi~flda 125 (470) T PTZ00142 66 KPRKVILL----IKAGEAVDETIDNLLPLLEK--GDIIIDGGNEWYL--NTERRIKRCEEKGILYLGM 125 (470) T ss_pred CCCEEEEE----eCChHHHHHHHHHHHhhCCC--CCEEEECCCCCHH--HHHHHHHHHHHcCCeEEcC Confidence 35766553 12344556688999999998 5555543211111 1344456777778776653 No 426 >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional Probab=26.45 E-value=3.6e+02 Score=27.10 Aligned_cols=99 Identities=14% Similarity=0.189 Sum_probs=51.3 Q ss_pred HHHHHHHHHhcCCC-CCCeEEEEcCCcCHHHHHHHHHcCC--CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc Q 019282 167 RDVFEFLAEASHIT-PNSHVLEIGCGTLRVGVHFIRYLNP--ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED 243 (343) Q Consensus 167 ~~~~~~l~~~~~l~-~~~rVLDIGCGtG~~a~~la~~~~~--~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~ 243 (343) +..++-+....++. .+.+|+=+|+|+ .+..++..+.. ..+.++++++.....+ .. .+. .+ . T Consensus 196 ~s~~~ai~rat~~~l~Gk~VlViG~G~--IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A--~~---~G~---~v--~---- 259 (425) T PRK05476 196 ESLLDGIKRATNVLIAGKVVVVAGYGD--VGKGCAQRLRGLGARVIVTEVDPICALQA--AM---DGF---RV--M---- 259 (425) T ss_pred hhhHHHHHHhccCCCCCCEEEEECCCH--HHHHHHHHHHhCCCEEEEEcCCchhhHHH--Hh---cCC---Ee--c---- Confidence 33444444433333 688999999985 55555443332 3455666665332221 11 121 11 1 Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHH-HHHhccCCCCcEEEEE Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLE-RLASKLRPYDGRIFVS 293 (343) Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~-~l~r~LkP~GG~lvi~ 293 (343) ++.+. -...|+|+..- +... .+. ...+.+|+ |++++.. T Consensus 260 -~l~ea--l~~aDVVI~aT-----G~~~---vI~~~~~~~mK~-GailiNv 298 (425) T PRK05476 260 -TMEEA--AELGDIFVTAT-----GNKD---VITAEHMEAMKD-GAILANI 298 (425) T ss_pred -CHHHH--HhCCCEEEECC-----CCHH---HHHHHHHhcCCC-CCEEEEc Confidence 11111 13579887642 2222 454 68889999 8777654 No 427 >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh Probab=26.21 E-value=2e+02 Score=26.95 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=49.8 Q ss_pred hcCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc--CCCCC Q 019282 176 ASHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF--TKFGS 251 (343) Q Consensus 176 ~~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl--~~~~~ 251 (343) ...+.++.+||=.|+ +.|..+..+++..+ +.++.++.+. ....+++. +. . .+........ ..... T Consensus 172 ~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g---~~vi~~~~~~-~~~~~~~~---g~---~-~~~~~~~~~~~~~~~~~ 240 (350) T cd08274 172 RAGVGAGETVLVTGASGGVGSALVQLAKRRG---AIVIAVAGAA-KEEAVRAL---GA---D-TVILRDAPLLADAKALG 240 (350) T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC---CEEEEEeCch-hhHHHHhc---CC---e-EEEeCCCccHHHHHhhC Confidence 356788899999987 35555555666544 3333333332 33333221 22 1 1111111110 00112 Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEE Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFV 292 (343) Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi 292 (343) ...+|+|+.. .... .+....+.|++ +|.++. T Consensus 241 ~~~~d~vi~~-----~g~~----~~~~~~~~l~~-~G~~v~ 271 (350) T cd08274 241 GEPVDVVADV-----VGGP----LFPDLLRLLRP-GGRYVT 271 (350) T ss_pred CCCCcEEEec-----CCHH----HHHHHHHHhcc-CCEEEE Confidence 3468988753 2221 46778899999 999874 No 428 >TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site. Probab=26.11 E-value=1.9e+02 Score=27.27 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=48.5 Q ss_pred CCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCCCCC Q 019282 178 HITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKFGSG 252 (343) Q Consensus 178 ~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~~~~ 252 (343) ...++.+||-.|+| .|..+..+++..+...+.++ +.+......+++. +. . ..+.....++ ...... T Consensus 158 ~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~---g~-~---~~v~~~~~~~~~~l~~~~~~ 228 (340) T TIGR00692 158 GPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKM---GA-T---YVVNPFKEDVVKEVADLTDG 228 (340) T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHh---CC-c---EEEcccccCHHHHHHHhcCC Confidence 35677888887765 34455555555432223344 4444333333321 11 0 1111111111 111123 Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ..+|+|+-.. ... ..+.++.+.|++ +|+++.. T Consensus 229 ~~~d~vld~~-----g~~---~~~~~~~~~l~~-~g~~v~~ 260 (340) T TIGR00692 229 EGVDVFLEMS-----GAP---KALEQGLQAVTP-GGRVSLL 260 (340) T ss_pred CCCCEEEECC-----CCH---HHHHHHHHhhcC-CCEEEEE Confidence 4689887642 111 157788999999 9998664 No 429 >PLN02586 probable cinnamyl alcohol dehydrogenase Probab=25.80 E-value=3e+02 Score=26.35 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=47.0 Q ss_pred CCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc-CCcCCCCCCCce Q 019282 178 HITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED-MDFTKFGSGVVY 255 (343) Q Consensus 178 ~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~-~dl~~~~~~~~f 255 (343) .+.++.+||=.|+| .|..+..+++... ..+.+++.+.... ...+++. |. . ..+.... ..+... .+.+ T Consensus 180 ~~~~g~~VlV~G~G~vG~~avq~Ak~~G-a~vi~~~~~~~~~-~~~~~~~---Ga---~-~vi~~~~~~~~~~~--~~~~ 248 (360) T PLN02586 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISSSSNKE-DEAINRL---GA---D-SFLVSTDPEKMKAA--IGTM 248 (360) T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCcchh-hhHHHhC---CC---c-EEEcCCCHHHHHhh--cCCC Confidence 45678888888885 3444455555543 2333444333221 1222221 21 0 1111000 011111 1247 Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) |+|+-. .+.. ..+....+.|++ ||+++.. T Consensus 249 D~vid~-----~g~~---~~~~~~~~~l~~-~G~iv~v 277 (360) T PLN02586 249 DYIIDT-----VSAV---HALGPLLGLLKV-NGKLITL 277 (360) T ss_pred CEEEEC-----CCCH---HHHHHHHHHhcC-CcEEEEe Confidence 887643 2222 157788999999 9998764 No 430 >KOG2912 consensus Predicted DNA methylase [Function unknown] Probab=25.44 E-value=2.3e+02 Score=27.59 Aligned_cols=78 Identities=23% Similarity=0.176 Sum_probs=36.6 Q ss_pred EEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC-----cCCCCCCCceeEEE Q 019282 185 VLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD-----FTKFGSGVVYDLIY 259 (343) Q Consensus 185 VLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d-----l~~~~~~~~fDlIv 259 (343) =+|||.|+-.+--.+-....+-.+.++++|......+ .....++.....+..+..+..+ ...-..+..||.+. T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a--~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcM 183 (419) T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYA--KSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCM 183 (419) T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchh--hccccccccccceeeEEecchhhcchhhhccCccceeeEEe Confidence 4799877754432222222223345667776555555 3333322222233333221111 11111245699999 Q ss_pred Ecccc Q 019282 260 ASAVF 264 (343) Q Consensus 260 s~~v~ 264 (343) |+--| T Consensus 184 cNPPF 188 (419) T KOG2912|consen 184 CNPPF 188 (419) T ss_pred cCCch Confidence 98655 No 431 >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina Probab=25.41 E-value=2.3e+02 Score=26.14 Aligned_cols=97 Identities=13% Similarity=0.091 Sum_probs=49.9 Q ss_pred cCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCCC Q 019282 177 SHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKFG 250 (343) Q Consensus 177 ~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~~ 250 (343) ..+.++.+||=.|+ +.|..+..+++..+. .++.+..+.......++. +. ..++.....++ .... T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~---~v~~~~~~~~~~~~~~~~---g~----~~~~~~~~~~~~~~i~~~~ 204 (324) T cd08292 135 LGVKPGQWLIQNAAGGAVGKLVAMLAAARGI---NVINLVRRDAGVAELRAL---GI----GPVVSTEQPGWQDKVREAA 204 (324) T ss_pred hCCCCCCEEEEcccccHHHHHHHHHHHHCCC---eEEEEecCHHHHHHHHhc---CC----CEEEcCCCchHHHHHHHHh Confidence 56778889988875 256666666666543 333332222222222221 22 11111111111 1111 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ....+|+|+.. .+.. .+....+.|++ +|+++.. T Consensus 205 ~~~~~d~v~d~-----~g~~----~~~~~~~~l~~-~g~~v~~ 237 (324) T cd08292 205 GGAPISVALDS-----VGGK----LAGELLSLLGE-GGTLVSF 237 (324) T ss_pred CCCCCcEEEEC-----CCCh----hHHHHHHhhcC-CcEEEEE Confidence 23468988753 2332 45678899999 9998754 No 432 >TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology. Probab=25.35 E-value=88 Score=26.51 Aligned_cols=13 Identities=8% Similarity=0.153 Sum_probs=8.9 Q ss_pred CCHHHHHHHHHHH Q 019282 84 ATKEDIEWVRDQI 96 (343) Q Consensus 84 ~~~~~~~~~~~~~ 96 (343) .|+++++.++.+. T Consensus 30 ysp~~l~~i~~~~ 42 (142) T TIGR03042 30 YSPAQLAQIQRQA 42 (142) T ss_pred CCHHHHHHHHHHH Confidence 3677777777765 No 433 >cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman Probab=24.98 E-value=2.4e+02 Score=25.87 Aligned_cols=97 Identities=18% Similarity=0.254 Sum_probs=48.4 Q ss_pred cCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC----cCCCC Q 019282 177 SHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD----FTKFG 250 (343) Q Consensus 177 ~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d----l~~~~ 250 (343) ..+.++.+||=.|+ +.|..+..+++..+ ..++.+..+......+++. +. . . .+.....+ +.... T Consensus 134 ~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g---~~v~~~~~~~~~~~~~~~~---g~-~-~--~~~~~~~~~~~~~~~~~ 203 (323) T cd05282 134 LKLPPGDWVIQNAANSAVGRMLIQLAKLLG---FKTINVVRRDEQVEELKAL---GA-D-E--VIDSSPEDLAQRVKEAT 203 (323) T ss_pred ccCCCCCEEEEcccccHHHHHHHHHHHHCC---CeEEEEecChHHHHHHHhc---CC-C-E--EecccchhHHHHHHHHh Confidence 34577889988876 35666666666543 3333333333333333322 21 0 1 11110001 11111 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ....+|+|+.. +... ......+.|++ +|+++.. T Consensus 204 ~~~~~d~vl~~-----~g~~----~~~~~~~~l~~-~g~~v~~ 236 (323) T cd05282 204 GGAGARLALDA-----VGGE----SATRLARSLRP-GGTLVNY 236 (323) T ss_pred cCCCceEEEEC-----CCCH----HHHHHHHhhCC-CCEEEEE Confidence 23468988753 2222 23466789999 9998754 No 434 >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] Probab=24.88 E-value=92 Score=28.62 Aligned_cols=34 Identities=15% Similarity=0.322 Sum_probs=28.7 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcCh Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDE 215 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~ 215 (343) ...||-.||..|+.+..+++.+...++.++.... T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR 40 (289) T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATAR 40 (289) T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEcc Confidence 4689999999999999999988888887776543 No 435 >PRK08655 prephenate dehydrogenase; Provisional Probab=24.72 E-value=2.6e+02 Score=28.02 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=18.5 Q ss_pred ceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEE Q 019282 254 VYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRI 290 (343) Q Consensus 254 ~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~l 290 (343) ..|+|+.. ++......+++++...++| |..+ T Consensus 58 ~aDvVIla-----vp~~~~~~vl~~l~~~l~~-~~iV 88 (437) T PRK08655 58 DADIVIIS-----VPINVTEDVIKEVAPHVKE-GSLL 88 (437) T ss_pred cCCEEEEe-----cCHHHHHHHHHHHHhhCCC-CCEE Confidence 46777763 3333444567777777777 5433 No 436 >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy Probab=24.07 E-value=2.9e+02 Score=25.98 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=48.6 Q ss_pred CCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCCCCC Q 019282 178 HITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKFGSG 252 (343) Q Consensus 178 ~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~~~~ 252 (343) .+.++.+||-.|+| .|..+..+++..+...+.+++ .+........+. +. . ..+.....++ .... . T Consensus 172 ~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~---g~---~-~~~~~~~~~~~~~~~~~~-~ 241 (350) T cd08240 172 PLVADEPVVIIGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAA---GA---D-VVVNGSDPDAAKRIIKAA-G 241 (350) T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHh---CC---c-EEecCCCccHHHHHHHHh-C Confidence 34467889988765 344445555554433344444 333333333321 21 1 1121111111 1111 1 Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +.+|+|+.. .+.. . .+....+.|++ +|+++.. T Consensus 242 ~~~d~vid~-----~g~~-~--~~~~~~~~l~~-~g~~v~~ 273 (350) T cd08240 242 GGVDAVIDF-----VNNS-A--TASLAFDILAK-GGKLVLV 273 (350) T ss_pred CCCcEEEEC-----CCCH-H--HHHHHHHHhhc-CCeEEEE Confidence 258888753 2221 1 57888999999 9998754 No 437 >PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway []. Probab=23.84 E-value=36 Score=29.13 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=6.3 Q ss_pred ceEEEehhHHH Q 019282 12 GIVITVPVLVL 22 (343) Q Consensus 12 ~~~~~~~~~~~ 22 (343) |+|+.|.+.+| T Consensus 53 GvVVGVGg~il 63 (154) T PF04478_consen 53 GVVVGVGGPIL 63 (154) T ss_pred EEEecccHHHH Confidence 56666655444 No 438 >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] Probab=23.79 E-value=2.2e+02 Score=26.98 Aligned_cols=118 Identities=11% Similarity=0.159 Sum_probs=70.4 Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCC-CCcee Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGS-GVVYD 256 (343) Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~-~~~fD 256 (343) .+.+++...|+|.-+|+++-.|.+ .+..++.+|...+....- . ...+.-...+... +.+ ....| T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVk----r~m~V~aVDng~ma~sL~----d----tg~v~h~r~DGfk---~~P~r~~id 272 (358) T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVK----RNMRVYAVDNGPMAQSLM----D----TGQVTHLREDGFK---FRPTRSNID 272 (358) T ss_pred hhcCCceeeecccCCCccchhhhh----cceEEEEeccchhhhhhh----c----ccceeeeeccCcc---cccCCCCCc Confidence 468899999999999999999998 788899988765433322 1 1133333322222 333 45678 Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEE---EEEeccccccCCC-----HHHHHHHHHhcCCcE Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRI---FVSHNIKFCSRLG-----GEECTKRLTSLGLEY 318 (343) Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~l---vi~~~~~~~~~~~-----~~~l~~~L~~aGf~~ 318 (343) -.+|.. +..+.. +-..+...|.. |.. ++.-..+.-.+|. .+.+.+.+.+.|+.. T Consensus 273 WmVCDm----VEkP~r--v~~li~~Wl~n--GwCre~IfNLKLPMKkRy~Ev~~~L~~~~~~l~~~g~~~ 334 (358) T COG2933 273 WMVCDM----VEKPAR--VAALIAKWLVN--GWCRETIFNLKLPMKKRYEEVRLCLARLEEQLDEHGINA 334 (358) T ss_pred eEEeeh----hcCcHH--HHHHHHHHHHc--chHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhcCCce Confidence 777753 334444 55667777875 543 1111111111221 566777788888864 No 439 >cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et Probab=23.41 E-value=5.4e+02 Score=23.01 Aligned_cols=95 Identities=18% Similarity=0.239 Sum_probs=47.3 Q ss_pred CCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCce Q 019282 178 HITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343) Q Consensus 178 ~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343) .+.++.+||=.|+ +.|..+..+++.. ++.++.++.+. .....++. +. ...+.....++........+ T Consensus 141 ~~~~~~~vlv~g~~g~~g~~~~~~a~~~---g~~v~~~~~~~-~~~~~~~~---g~----~~~~~~~~~~~~~~~~~~~~ 209 (309) T cd05289 141 GLKAGQTVLIHGAAGGVGSFAVQLAKAR---GARVIATASAA-NADFLRSL---GA----DEVIDYTKGDFERAAAPGGV 209 (309) T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHc---CCEEEEEecch-hHHHHHHc---CC----CEEEeCCCCchhhccCCCCc Confidence 4778889998886 3444545555543 33343333333 33333221 11 11111111122111123458 Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) |+++.. .+.. .+....+.+++ +|.++.. T Consensus 210 d~v~~~-----~~~~----~~~~~~~~l~~-~g~~v~~ 237 (309) T cd05289 210 DAVLDT-----VGGE----TLARSLALVKP-GGRLVSI 237 (309) T ss_pred eEEEEC-----CchH----HHHHHHHHHhc-CcEEEEE Confidence 888753 2222 46778889999 9998754 No 440 >PLN02702 L-idonate 5-dehydrogenase Probab=23.28 E-value=5.3e+02 Score=24.43 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=51.1 Q ss_pred hcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC----C- Q 019282 176 ASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK----F- 249 (343) Q Consensus 176 ~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~----~- 249 (343) ...+.++.+||=+|+| .|..+..+++..+...+.+++.+ ......+++. +.. ..........++.. . T Consensus 176 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~--~~~~~~~~~~---g~~--~~~~~~~~~~~~~~~~~~~~ 248 (364) T PLN02702 176 RANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVD--DERLSVAKQL---GAD--EIVLVSTNIEDVESEVEEIQ 248 (364) T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHh---CCC--EEEecCcccccHHHHHHHHh Confidence 4567788899999765 34555556665443334444443 3333333322 110 11111000011110 1 Q ss_pred -CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 250 -GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 250 -~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ...+.+|+|+-. .+.. ..+....+.|++ +|+++.. T Consensus 249 ~~~~~~~d~vid~-----~g~~---~~~~~~~~~l~~-~G~~v~~ 284 (364) T PLN02702 249 KAMGGGIDVSFDC-----VGFN---KTMSTALEATRA-GGKVCLV 284 (364) T ss_pred hhcCCCCCEEEEC-----CCCH---HHHHHHHHHHhc-CCEEEEE Confidence 012358888753 2211 157888999999 9998754 No 441 >PRK06522 2-dehydropantoate 2-reductase; Reviewed Probab=23.27 E-value=4.6e+02 Score=24.12 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=22.0 Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEE Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFV 292 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi 292 (343) ..+|+|+.. ++......+++.+...+.+ +..++. T Consensus 65 ~~~d~vila-----~k~~~~~~~~~~l~~~l~~-~~~iv~ 98 (304) T PRK06522 65 GPQDLVILA-----VKAYQLPAALPSLAPLLGP-DTPVLF 98 (304) T ss_pred CCCCEEEEe-----cccccHHHHHHHHhhhcCC-CCEEEE Confidence 578988764 2333344578888888887 655554 No 442 >PRK07574 formate dehydrogenase; Provisional Probab=23.21 E-value=3.9e+02 Score=26.42 Aligned_cols=113 Identities=18% Similarity=0.199 Sum_probs=55.5 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343) .+++|.=||+| .++..+++.+...+..++..|........... .+ .... .++.+. -...|+|+. T Consensus 191 ~gktVGIvG~G--~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~---~g-----~~~~----~~l~el--l~~aDvV~l 254 (385) T PRK07574 191 EGMTVGIVGAG--RIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQE---LG-----LTYH----VSFDSL--VSVCDVVTI 254 (385) T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCCEEEEECCCCCchhhHhh---cC-----ceec----CCHHHH--hhcCCEEEE Confidence 35678888775 46666666555556667666654321111111 01 1111 122222 135688887 Q ss_pred ccccccCCchHHHHHH-HHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCc Q 019282 261 SAVFLHMPDKLVWVGL-ERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLE 317 (343) Q Consensus 261 ~~v~~hl~~~~~~~~L-~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~ 317 (343) ..-+. ++...++ ++....||| |. ++|..... .....+.+.+.|++--+. T Consensus 255 ~lPlt----~~T~~li~~~~l~~mk~-ga-~lIN~aRG--~iVDe~AL~~AL~sG~i~ 304 (385) T PRK07574 255 HCPLH----PETEHLFDADVLSRMKR-GS-YLVNTARG--KIVDRDAVVRALESGHLA 304 (385) T ss_pred cCCCC----HHHHHHhCHHHHhcCCC-Cc-EEEECCCC--chhhHHHHHHHHHhCCcc Confidence 43321 2222233 457888998 54 44542111 111267777777764443 No 443 >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... Probab=23.02 E-value=1.9e+02 Score=24.25 Aligned_cols=33 Identities=33% Similarity=0.441 Sum_probs=21.0 Q ss_pred ceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 254 VYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 254 ~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ..|+|+. .+|......+++++...+++ |..++. T Consensus 69 ~ad~Iii-----avPs~~~~~~~~~l~~~l~~--~~~ii~ 101 (157) T PF01210_consen 69 DADIIII-----AVPSQAHREVLEQLAPYLKK--GQIIIS 101 (157) T ss_dssp T-SEEEE------S-GGGHHHHHHHHTTTSHT--T-EEEE T ss_pred cccEEEe-----cccHHHHHHHHHHHhhccCC--CCEEEE Confidence 4577775 35555566699999999987 544444 No 444 >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh Probab=23.01 E-value=3.3e+02 Score=24.74 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=20.8 Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ..+|+++... +.. .+..+.+.+++ +|+++.. T Consensus 212 ~~~d~vi~~~-----~~~----~~~~~~~~l~~-~g~~v~~ 242 (328) T cd08268 212 KGVDVVFDPV-----GGP----QFAKLADALAP-GGTLVVY 242 (328) T ss_pred CCceEEEECC-----chH----hHHHHHHhhcc-CCEEEEE Confidence 3588887642 221 45677889999 9998754 No 445 >PRK06701 short chain dehydrogenase; Provisional Probab=22.80 E-value=6e+02 Score=23.36 Aligned_cols=31 Identities=13% Similarity=0.030 Sum_probs=19.1 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLE 212 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvd 212 (343) ++++||=.|+ +|.++..+++.+...+..++- T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l 75 (290) T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAI 75 (290) T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEE Confidence 3567888875 556677777766444444433 No 446 >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional Probab=22.75 E-value=4.1e+02 Score=23.83 Aligned_cols=34 Identities=9% Similarity=0.018 Sum_probs=21.8 Q ss_pred CCCeEEEEcCCc-CHHHHHHHHHcCCCce--EEEEcC Q 019282 181 PNSHVLEIGCGT-LRVGVHFIRYLNPENF--HCLERD 214 (343) Q Consensus 181 ~~~rVLDIGCGt-G~~a~~la~~~~~~~~--~vvdid 214 (343) .++.+|=.|++. +.++..+++.+...+. .+++.+ T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~ 45 (258) T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLN 45 (258) T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCC Confidence 357899999876 3677777776643444 344544 No 447 >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] Probab=22.67 E-value=1.2e+02 Score=29.78 Aligned_cols=39 Identities=15% Similarity=-0.021 Sum_probs=26.7 Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHH Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLM 219 (343) Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~ 219 (343) ...++|.-|+|==-|||.+....+. -+.+++|.|+...+ T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~----FGa~viGtDIDyr~ 242 (421) T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAH----FGAYVIGTDIDYRT 242 (421) T ss_pred hccCCCCEEecCccccCceeeehhh----hcceeeccccchhe Confidence 4578999999998999988776666 23345444444333 No 448 >PRK08229 2-dehydropantoate 2-reductase; Provisional Probab=22.45 E-value=3.5e+02 Score=25.60 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=20.7 Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEE Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIF 291 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lv 291 (343) ..+|+|+..- +......+++.+...+++ +..++ T Consensus 72 ~~~D~vil~v-----k~~~~~~~~~~l~~~~~~-~~iii 104 (341) T PRK08229 72 ATADLVLVTV-----KSAATADAAAALAGHARP-GAVVV 104 (341) T ss_pred cCCCEEEEEe-----cCcchHHHHHHHHhhCCC-CCEEE Confidence 4688887632 333344578888888887 55443 No 449 >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] Probab=22.42 E-value=6.8e+02 Score=23.84 Aligned_cols=125 Identities=17% Similarity=0.133 Sum_probs=64.0 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCC-ceeEEEE Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGV-VYDLIYA 260 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~-~fDlIvs 260 (343) ..+++|+=||-|.+..-+.... -.-+...++|+.....-.. . ..... ....+...+....... .+|+|+. T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~-n-----~~~~~--~~~~di~~~~~~~~~~~~~Dvlig 73 (328) T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKA-N-----FPHGD--IILGDIKELDGEALRKSDVDVLIG 73 (328) T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHH-h-----CCCCc--eeechHhhcChhhccccCCCEEEe Confidence 3579999999999998887632 1223456666644333211 1 11111 1111111111001112 7899997 Q ss_pred ccccccCCch--------HH---HHHHHHHHhccCCCCcEEEEEeccccccCC--CHHHHHHHHHhcCCc Q 019282 261 SAVFLHMPDK--------LV---WVGLERLASKLRPYDGRIFVSHNIKFCSRL--GGEECTKRLTSLGLE 317 (343) Q Consensus 261 ~~v~~hl~~~--------~~---~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~--~~~~l~~~L~~aGf~ 317 (343) ..-...+... .. --.+.++.+.++| -.+++..-.....+. ..+.+.+.|++.||. T Consensus 74 GpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328) T COG0270 74 GPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328) T ss_pred CCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhcCchHHHHHHHHHHHcCCc Confidence 6444332111 11 1145566677777 455554211112212 378899999999997 No 450 >PTZ00357 methyltransferase; Provisional Probab=22.39 E-value=2.9e+02 Score=29.93 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=23.0 Q ss_pred CeEEEEcCCcCHHHHHHHHHcC--CCceEEEEcChh Q 019282 183 SHVLEIGCGTLRVGVHFIRYLN--PENFHCLERDEL 216 (343) Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~--~~~~~vvdid~s 216 (343) ..|+=+|+|-|-+....+++.. +..+.+..++.+ T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKN 737 (1072) T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKN 737 (1072) T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecC Confidence 3589999999988777766543 234555555555 No 451 >cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh Probab=22.20 E-value=5.9e+02 Score=23.02 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=19.4 Q ss_pred cCCCCCCeEEEEcC--CcCHHHHHHHHHcC Q 019282 177 SHITPNSHVLEIGC--GTLRVGVHFIRYLN 204 (343) Q Consensus 177 ~~l~~~~rVLDIGC--GtG~~a~~la~~~~ 204 (343) ..+.++.+||-.|+ +.|..+..+++..+ T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g 168 (319) T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALG 168 (319) T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcC Confidence 34778899999997 35666666666543 No 452 >PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments. Probab=22.13 E-value=3.3e+02 Score=21.55 Aligned_cols=44 Identities=9% Similarity=0.158 Sum_probs=33.6 Q ss_pred HHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee Q 019282 275 GLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343) Q Consensus 275 ~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343) +++++.+.|+| |...++..- .....+.+.+.+++.|-++++... T Consensus 44 ~~~ev~~~L~~-GssAl~~lv----~~~~~d~v~~~l~~~gg~v~~t~l 87 (102) T PF06897_consen 44 FIKEVGEALKP-GSSALFLLV----DEATEDKVDAALRKFGGKVLRTSL 87 (102) T ss_pred HHHHHHhhcCC-CceEEEEEe----ccCCHHHHHHHHHhcCCEEEeccC Confidence 79999999999 887766531 223478899999999988876543 No 453 >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i Probab=22.09 E-value=2.6e+02 Score=26.11 Aligned_cols=98 Identities=18% Similarity=0.245 Sum_probs=49.8 Q ss_pred cCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceE-EEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCCC Q 019282 177 SHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFH-CLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKFG 250 (343) Q Consensus 177 ~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~-vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~~ 250 (343) ..+.++.+||=.|+| .|..+..+++.. +.. ++.++.+........+. +. ...+..+..++ .... T Consensus 161 ~~~~~g~~VlV~g~g~vg~~~~~la~~~---g~~~v~~~~~s~~~~~~~~~~---g~----~~~~~~~~~~~~~~i~~~~ 230 (343) T cd08235 161 AGIKPGDTVLVIGAGPIGLLHAMLAKAS---GARKVIVSDLNEFRLEFAKKL---GA----DYTIDAAEEDLVEKVRELT 230 (343) T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---CCcEEEEECCCHHHHHHHHHh---CC----cEEecCCccCHHHHHHHHh Confidence 467888899988865 444444555543 333 44444443333333221 11 11121111111 1111 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ....+|+|+-... .. ..+..+.+.|++ +|+++.. T Consensus 231 ~~~~vd~vld~~~-----~~---~~~~~~~~~l~~-~g~~v~~ 264 (343) T cd08235 231 DGRGADVVIVATG-----SP---EAQAQALELVRK-GGRILFF 264 (343) T ss_pred CCcCCCEEEECCC-----Ch---HHHHHHHHHhhc-CCEEEEE Confidence 2345898875322 11 157778899999 9998764 No 454 >cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous Probab=22.09 E-value=4.8e+02 Score=24.09 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=22.5 Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ..+|+++... +.. ..+....+.|++ +|+++.. T Consensus 232 ~~vd~vld~~-----g~~---~~~~~~~~~l~~-~G~~v~~ 263 (306) T cd08258 232 DGADVVIECS-----GAV---PALEQALELLRK-GGRIVQV 263 (306) T ss_pred CCCCEEEECC-----CCh---HHHHHHHHHhhc-CCEEEEE Confidence 4688887642 111 167788899999 9998865 No 455 >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i Probab=22.07 E-value=2.9e+02 Score=25.23 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=48.8 Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceE-EEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCCC Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFH-CLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKFG 250 (343) Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~-vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~~ 250 (343) ...+.++.+||=.|+ |.++..+++.....++. ++.++..........+. +. ...+.....++ .+.. T Consensus 124 ~~~~~~~~~vlI~g~--g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~---g~----~~~~~~~~~~~~~~l~~~~ 194 (312) T cd08269 124 RGWIRAGKTVAVIGA--GFIGLLFLQLAAAAGARRVIAIDRRPARLALAREL---GA----TEVVTDDSEAIVERVRELT 194 (312) T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh---CC----ceEecCCCcCHHHHHHHHc Confidence 356778888888875 44555544433223333 44344333333332221 11 01111111111 1111 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ....+|+++.... .. ..+....++|++ +|.++.. T Consensus 195 ~~~~vd~vld~~g-----~~---~~~~~~~~~l~~-~g~~~~~ 228 (312) T cd08269 195 GGAGADVVIEAVG-----HQ---WPLDLAGELVAE-RGRLVIF 228 (312) T ss_pred CCCCCCEEEECCC-----CH---HHHHHHHHHhcc-CCEEEEE Confidence 2345888876421 11 156778899999 9998754 No 456 >PF08290 Hep_core_N: Hepatitis core protein, putative zinc finger; InterPro: IPR013195 This entry represent a short region found at the N terminus of some viral capsid (HBcAg) proteins from various Hepatitis B virus (HBV), which is a major human pathogen. The conservation of four Cys residues suggests that this region acts as a zinc binding domain. Hepatitis virus is composed of an outer envelope of host-derived lipid containing the surface proteins, and an inner protein capsid that contains genomic DNA. The capsid is composed of a single polypeptide, HBcAg, also known as the core antigen. The capsid has a 5-helical fold, where two long helices form a hairpin that dimerises into a 4-helical bundle []; this fold is unusual for icosahedral viruses. The monomer fold is stabilised by a hydrophobic core that is highly conserved among human viral variants. The capsid is assembled from dimers via interactions involving a highly conserved arginine-rich region near the C terminus. This viral capsid acts as a core antigen, the major immunodominant region lying at the tips of the alpha-helical hairpins that form spikes on the capsid surface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005198 structural molecule activity, 0009405 pathogenesis Probab=21.62 E-value=22 Score=21.00 Aligned_cols=15 Identities=27% Similarity=0.800 Sum_probs=9.6 Q ss_pred hccCCcccCCCCCcc Q 019282 35 LSSLSTCNCPLSSTT 49 (343) Q Consensus 35 ~~~~~~~~~~~~~~~ 49 (343) |...-+|+||.-.+| T Consensus 6 lcliiscscpt~qas 20 (27) T PF08290_consen 6 LCLIISCSCPTVQAS 20 (27) T ss_pred eeeeeeccCCcchhh Confidence 344567999975543 No 457 >PRK08306 dipicolinate synthase subunit A; Reviewed Probab=21.57 E-value=2.8e+02 Score=26.16 Aligned_cols=86 Identities=26% Similarity=0.293 Sum_probs=44.1 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCC--ceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPE--NFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~--~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343) .+.+|+=||+|. .+..++..+... .+++++.+.. ..+.++. .+. . .... .++.+. -..+|+| T Consensus 151 ~g~kvlViG~G~--iG~~~a~~L~~~Ga~V~v~~r~~~--~~~~~~~---~G~---~--~~~~--~~l~~~--l~~aDiV 214 (296) T PRK08306 151 HGSNVLVLGFGR--TGMTLARTLKALGANVTVGARKSA--HLARITE---MGL---S--PFHL--SELAEE--VGKIDII 214 (296) T ss_pred CCCEEEEECCcH--HHHHHHHHHHHCCCEEEEEECCHH--HHHHHHH---cCC---e--eecH--HHHHHH--hCCCCEE Confidence 478999999863 555555544333 4555555543 2332222 121 1 1100 122211 2468999 Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEE Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIF 291 (343) Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lv 291 (343) +..- +.. . +-++..+.++| |+.++ T Consensus 215 I~t~-----p~~-~--i~~~~l~~~~~-g~vII 238 (296) T PRK08306 215 FNTI-----PAL-V--LTKEVLSKMPP-EALII 238 (296) T ss_pred EECC-----Chh-h--hhHHHHHcCCC-CcEEE Confidence 8742 222 1 33567788999 87765 No 458 >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha Probab=21.50 E-value=2.7e+02 Score=26.00 Aligned_cols=98 Identities=20% Similarity=0.274 Sum_probs=51.8 Q ss_pred cCCCCCCeEEEEcCC--cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCCC Q 019282 177 SHITPNSHVLEIGCG--TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKFG 250 (343) Q Consensus 177 ~~l~~~~rVLDIGCG--tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~~ 250 (343) ..+.++.+||=.|+| .|..+..+++..+ +.++.++.+........+. +. . ..+.....++ .... T Consensus 161 ~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g---~~v~~~~~~~~~~~~~~~~---g~---~-~v~~~~~~~~~~~~~~~~ 230 (341) T cd08297 161 AGLKPGDWVVISGAGGGLGHLGVQYAKAMG---LRVIAIDVGDEKLELAKEL---GA---D-AFVDFKKSDDVEAVKELT 230 (341) T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHc---CC---c-EEEcCCCccHHHHHHHHh Confidence 367788899988875 5666666777654 3344444433333333221 11 1 1111111111 1111 Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ..+.+|+|+....- . ..+..+.+.+++ +|+++.. T Consensus 231 ~~~~vd~vl~~~~~----~----~~~~~~~~~l~~-~g~~v~~ 264 (341) T cd08297 231 GGGGAHAVVVTAVS----A----AAYEQALDYLRP-GGTLVCV 264 (341) T ss_pred cCCCCCEEEEcCCc----h----HHHHHHHHHhhc-CCEEEEe Confidence 23468988742211 1 156778899999 9999865 No 459 >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin Probab=21.49 E-value=1.9e+02 Score=26.96 Aligned_cols=31 Identities=3% Similarity=0.096 Sum_probs=20.3 Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ..+|+|+-. ++.. ......+.+++ ||++++. T Consensus 211 ~~~d~vid~-----~g~~----~~~~~~~~l~~-~G~~v~~ 241 (324) T cd08291 211 LNATIFFDA-----VGGG----LTGQILLAMPY-GSTLYVY 241 (324) T ss_pred CCCcEEEEC-----CCcH----HHHHHHHhhCC-CCEEEEE Confidence 358888752 3332 34556788899 9998764 No 460 >KOG3917 consensus Beta-1,4-galactosyltransferase B4GALT7/SQV-3 [Carbohydrate transport and metabolism] Probab=21.16 E-value=1e+02 Score=28.25 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=20.2 Q ss_pred HHHHHHHHHHHhccCCcccCCCCCc Q 019282 24 LSVAAIFFFFLLSSLSTCNCPLSST 48 (343) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (343) ++.+++-+|-||..=+.|.|+.... T Consensus 19 ~cL~~~~flsLl~L~l~c~~dl~~~ 43 (310) T KOG3917|consen 19 ICLAACYFLSLLVLDLECTRDLMTK 43 (310) T ss_pred HHHHHHHHHHHHhhcccccchhhhh Confidence 5567788888888889999998763 No 461 >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional Probab=20.96 E-value=5.9e+02 Score=23.11 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=20.0 Q ss_pred CCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEE Q 019282 181 PNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLE 212 (343) Q Consensus 181 ~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvd 212 (343) .++.+|=.|++. +..+..+++.+...++.++- T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil 37 (262) T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAF 37 (262) T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEE Confidence 356788888876 36666666666444555443 No 462 >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... Probab=20.83 E-value=4.1e+02 Score=22.72 Aligned_cols=123 Identities=14% Similarity=0.134 Sum_probs=62.5 Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343) Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343) .+.+|.=||+| ..+..+++.+..-+..++..|............ + . .. .++.+. -...|+|+. T Consensus 35 ~g~tvgIiG~G--~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~---~-----~-~~----~~l~el--l~~aDiv~~ 97 (178) T PF02826_consen 35 RGKTVGIIGYG--RIGRAVARRLKAFGMRVIGYDRSPKPEEGADEF---G-----V-EY----VSLDEL--LAQADIVSL 97 (178) T ss_dssp TTSEEEEESTS--HHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHT---T-----E-EE----SSHHHH--HHH-SEEEE T ss_pred CCCEEEEEEEc--CCcCeEeeeeecCCceeEEecccCChhhhcccc---c-----c-ee----eehhhh--cchhhhhhh Confidence 47799999775 466666665555555666666655433311110 0 0 01 133222 135788887 Q ss_pred cccc----ccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeeccccccch Q 019282 261 SAVF----LHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTHDSLLFNH 331 (343) Q Consensus 261 ~~v~----~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~~~l~~~~ 331 (343) ..-+ +|+-+ ++....+|| |. ++|..... .-...+.+.+.|++--..-...+.+...+.+. T Consensus 98 ~~plt~~T~~li~-------~~~l~~mk~-ga-~lvN~aRG--~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~ 161 (178) T PF02826_consen 98 HLPLTPETRGLIN-------AEFLAKMKP-GA-VLVNVARG--ELVDEDALLDALESGKIAGAALDVFEPEPLPA 161 (178) T ss_dssp -SSSSTTTTTSBS-------HHHHHTSTT-TE-EEEESSSG--GGB-HHHHHHHHHTTSEEEEEESS-SSSSSST T ss_pred hhccccccceeee-------eeeeecccc-ce-EEEeccch--hhhhhhHHHHHHhhccCceEEEECCCCCCCCC Confidence 5433 22222 346788998 54 55543211 11227788888877555545555555555443 No 463 >cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d Probab=20.76 E-value=2e+02 Score=26.88 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=22.0 Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) ..+|+|+.. .+.. ..+....+.|++ +|+++.. T Consensus 234 ~~~dvvld~-----~g~~---~~~~~~~~~l~~-~g~~i~~ 265 (340) T cd05284 234 RGADAVIDF-----VGSD---ETLALAAKLLAK-GGRYVIV 265 (340) T ss_pred CCCCEEEEc-----CCCH---HHHHHHHHHhhc-CCEEEEE Confidence 468988753 2221 157788899999 9998754 No 464 >PLN02896 cinnamyl-alcohol dehydrogenase Probab=20.64 E-value=5.9e+02 Score=24.10 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=24.6 Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcC Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERD 214 (343) Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid 214 (343) +.+++||=.| |+|.++.++++.+-..++.++.++ T Consensus 8 ~~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~ 41 (353) T PLN02896 8 SATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATL 41 (353) T ss_pred cCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEe Confidence 3467888877 589999999988865566665544 No 465 >PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed Probab=20.59 E-value=4.3e+02 Score=20.87 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=29.5 Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcE-EEEEecccccc-CCCHHHHHHHHHh Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGR-IFVSHNIKFCS-RLGGEECTKRLTS 313 (343) Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~-lvi~~~~~~~~-~~~~~~l~~~L~~ 313 (343) ..||+|+..- +..-.++++.....+ .|. +.+.....|.. .++.+.+...+.+ T Consensus 49 ~~~DvIll~P--------Qi~~~~~~i~~~~~~-~~ipv~~I~~~~Y~~~~~~~~~~~~~~~~ 102 (104) T PRK09590 49 AEYDLYLVSP--------QTKMYFKQFEEAGAK-VGKPVVQIPPQAYIPIPMGIEKMAKLILE 102 (104) T ss_pred CCCCEEEECh--------HHHHHHHHHHHHhhh-cCCCEEEeCHHHcCCCccCHHHHHHHHHh Confidence 4689988752 222257778887776 444 43333333332 4666766666544 No 466 >PRK06128 oxidoreductase; Provisional Probab=20.57 E-value=6.7e+02 Score=23.06 Aligned_cols=29 Identities=14% Similarity=0.066 Sum_probs=19.4 Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEE Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCL 211 (343) Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vv 211 (343) +++||=.|+ +|.++..+++.+...++.++ T Consensus 55 ~k~vlITGa-s~gIG~~~a~~l~~~G~~V~ 83 (300) T PRK06128 55 GRKALITGA-DSGIGRATAIAFAREGADIA 83 (300) T ss_pred CCEEEEecC-CCcHHHHHHHHHHHcCCEEE Confidence 568888885 66677778776754454443 No 467 >PRK07502 cyclohexadienyl dehydrogenase; Validated Probab=20.55 E-value=4e+02 Score=24.99 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=19.3 Q ss_pred ceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEE Q 019282 254 VYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIF 291 (343) Q Consensus 254 ~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lv 291 (343) ..|+|+.. ++......+++++...++| |..++ T Consensus 66 ~aDvViia-----vp~~~~~~v~~~l~~~l~~-~~iv~ 97 (307) T PRK07502 66 GADLVILC-----VPVGASGAVAAEIAPHLKP-GAIVT 97 (307) T ss_pred CCCEEEEC-----CCHHHHHHHHHHHHhhCCC-CCEEE Confidence 56887764 3333334467777777887 66443 No 468 >cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr Probab=20.35 E-value=3.6e+02 Score=24.73 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=51.2 Q ss_pred hcCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCC Q 019282 176 ASHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKF 249 (343) Q Consensus 176 ~~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~ 249 (343) ...+.++.+||=.|. +.|..+..+++..+ ..++.++.........++. +. . ..+.....++ ... T Consensus 137 ~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g---~~v~~~~~~~~~~~~~~~~---g~---~-~~~~~~~~~~~~~~~~~ 206 (324) T cd08244 137 LATLTPGDVVLVTAAAGGLGSLLVQLAKAAG---ATVVGAAGGPAKTALVRAL---GA---D-VAVDYTRPDWPDQVREA 206 (324) T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHc---CC---C-EEEecCCccHHHHHHHH Confidence 356778888888874 45666666666543 3344444333333333321 11 1 1121111111 111 Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) .....+|+|+.. .... ......+.|++ +|+++.. T Consensus 207 ~~~~~~d~vl~~-----~g~~----~~~~~~~~l~~-~g~~v~~ 240 (324) T cd08244 207 LGGGGVTVVLDG-----VGGA----IGRAALALLAP-GGRFLTY 240 (324) T ss_pred cCCCCceEEEEC-----CChH----hHHHHHHHhcc-CcEEEEE Confidence 122458999764 2222 34778899999 9998754 No 469 >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A. Probab=20.32 E-value=1.9e+02 Score=23.64 Aligned_cols=36 Identities=8% Similarity=-0.093 Sum_probs=16.6 Q ss_pred EEcCCcC--HHHHHHHHHcCCCceEEEEcChhHHHHHH Q 019282 187 EIGCGTL--RVGVHFIRYLNPENFHCLERDELSLMAAF 222 (343) Q Consensus 187 DIGCGtG--~~a~~la~~~~~~~~~vvdid~s~~~~a~ 222 (343) |||+..| .....++.........++.+++.+..... T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~ 38 (167) T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEK 38 (167) T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHH T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHH Confidence 8999999 55555442212223445556665554443 No 470 >cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma Probab=20.22 E-value=2.9e+02 Score=26.71 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=26.4 Q ss_pred cCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHh Q 019282 177 SHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYE 225 (343) Q Consensus 177 ~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~ 225 (343) ..+.++.+||=.|+ +.|..+..+++..+ ..++.++.+......+++ T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G---~~vv~~~~s~~~~~~~~~ 236 (393) T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAG---ANPVAVVSSEEKAEYCRA 236 (393) T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcC---CeEEEEeCCHHHHHHHHH Confidence 35677889999986 45555566666543 333334444444444443 No 471 >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal Probab=20.01 E-value=4.6e+02 Score=24.45 Aligned_cols=98 Identities=21% Similarity=0.302 Sum_probs=48.6 Q ss_pred cCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC-CCCCCc Q 019282 177 SHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK-FGSGVV 254 (343) Q Consensus 177 ~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~-~~~~~~ 254 (343) ..+.++.+||=.||| .|..+..+++..+ ..++.++.+......+++. +. . . .+.....++.. ...... T Consensus 159 ~~~~~~~~vlV~g~g~iG~~~~~~a~~~G---~~vi~~~~~~~~~~~~~~~---g~-~-~--~i~~~~~~~~~~~~~~~~ 228 (333) T cd08296 159 SGAKPGDLVAVQGIGGLGHLAVQYAAKMG---FRTVAISRGSDKADLARKL---GA-H-H--YIDTSKEDVAEALQELGG 228 (333) T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCC---CeEEEEeCChHHHHHHHHc---CC-c-E--EecCCCccHHHHHHhcCC Confidence 467788899999864 3334444445433 3344444443344433332 21 1 1 11111111110 000124 Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343) Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343) +|+|+.. .+.. ..+....+.|++ +|+++.. T Consensus 229 ~d~vi~~-----~g~~---~~~~~~~~~l~~-~G~~v~~ 258 (333) T cd08296 229 AKLILAT-----APNA---KAISALVGGLAP-RGKLLIL 258 (333) T ss_pred CCEEEEC-----CCch---HHHHHHHHHccc-CCEEEEE Confidence 7888752 2111 167788999999 9998764 Done!