Query 019284
Match_columns 343
No_of_seqs 435 out of 2770
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:12:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0716 Molecular chaperone (D 99.9 7.6E-27 1.7E-31 217.5 2.1 237 65-341 26-277 (279)
2 COG0484 DnaJ DnaJ-class molecu 99.9 1.4E-22 2.9E-27 198.5 8.0 69 68-136 2-70 (371)
3 KOG0713 Molecular chaperone (D 99.8 1.5E-21 3.3E-26 187.3 7.9 73 65-137 11-83 (336)
4 PRK14288 chaperone protein Dna 99.8 3.5E-19 7.5E-24 176.5 7.8 69 69-137 2-70 (369)
5 PRK14296 chaperone protein Dna 99.8 1.3E-18 2.8E-23 172.6 7.7 67 69-136 3-69 (372)
6 PRK14279 chaperone protein Dna 99.7 1.8E-18 3.9E-23 172.7 7.6 68 69-136 8-75 (392)
7 PRK14286 chaperone protein Dna 99.7 3.3E-18 7.2E-23 169.7 8.0 69 69-137 3-71 (372)
8 KOG0712 Molecular chaperone (D 99.7 4.5E-18 9.7E-23 164.9 7.6 66 69-137 3-68 (337)
9 PRK14282 chaperone protein Dna 99.7 1.2E-17 2.5E-22 165.6 7.9 68 69-136 3-71 (369)
10 PRK14287 chaperone protein Dna 99.7 1.4E-17 3E-22 165.2 8.0 68 69-137 3-70 (371)
11 PF00226 DnaJ: DnaJ domain; I 99.7 1.6E-17 3.5E-22 124.2 6.4 63 71-133 1-64 (64)
12 PRK14285 chaperone protein Dna 99.7 1.3E-17 2.8E-22 165.1 7.5 68 70-137 3-70 (365)
13 PRK14277 chaperone protein Dna 99.7 1.6E-17 3.5E-22 165.5 8.1 68 69-136 4-71 (386)
14 PRK14294 chaperone protein Dna 99.7 1.8E-17 4E-22 164.0 8.1 68 69-136 3-70 (366)
15 PRK14297 chaperone protein Dna 99.7 1.8E-17 3.8E-22 164.9 7.6 67 70-136 4-70 (380)
16 PTZ00037 DnaJ_C chaperone prot 99.7 1.8E-17 3.8E-22 166.7 7.3 65 69-137 27-91 (421)
17 PRK14301 chaperone protein Dna 99.7 2.3E-17 5E-22 163.7 7.7 69 69-137 3-71 (373)
18 PRK14299 chaperone protein Dna 99.7 2.8E-17 6.1E-22 158.1 8.0 68 69-137 3-70 (291)
19 PRK14298 chaperone protein Dna 99.7 2.1E-17 4.6E-22 164.2 7.3 67 69-136 4-70 (377)
20 PRK14276 chaperone protein Dna 99.7 2.4E-17 5.2E-22 164.0 7.4 68 69-137 3-70 (380)
21 PRK14284 chaperone protein Dna 99.7 2.9E-17 6.3E-22 164.0 7.8 67 70-136 1-67 (391)
22 PRK14283 chaperone protein Dna 99.7 2.7E-17 5.9E-22 163.4 7.6 67 69-136 4-70 (378)
23 PRK14295 chaperone protein Dna 99.7 3E-17 6.5E-22 163.7 7.7 66 69-134 8-73 (389)
24 PRK14291 chaperone protein Dna 99.7 3.5E-17 7.6E-22 162.9 7.5 67 69-136 2-68 (382)
25 PRK14278 chaperone protein Dna 99.7 3.4E-17 7.4E-22 162.8 7.1 66 70-136 3-68 (378)
26 KOG0691 Molecular chaperone (D 99.7 4.7E-17 1E-21 156.0 7.7 71 69-139 4-74 (296)
27 PRK14280 chaperone protein Dna 99.7 4.3E-17 9.3E-22 162.0 7.5 67 70-137 4-70 (376)
28 PRK10767 chaperone protein Dna 99.7 5.1E-17 1.1E-21 161.1 7.9 68 69-136 3-70 (371)
29 PRK14281 chaperone protein Dna 99.7 4.7E-17 1E-21 162.7 7.5 67 70-136 3-69 (397)
30 KOG0717 Molecular chaperone (D 99.7 3.8E-17 8.3E-22 161.7 6.4 78 68-145 6-84 (508)
31 PRK14289 chaperone protein Dna 99.7 1.7E-16 3.6E-21 158.2 8.1 68 69-136 4-71 (386)
32 PRK14290 chaperone protein Dna 99.6 1.9E-16 4.2E-21 156.7 7.4 67 70-136 3-70 (365)
33 KOG0715 Molecular chaperone (D 99.6 2.9E-16 6.3E-21 150.8 7.5 68 70-138 43-110 (288)
34 TIGR02349 DnaJ_bact chaperone 99.6 2.5E-16 5.5E-21 155.1 7.1 65 71-136 1-65 (354)
35 PRK14300 chaperone protein Dna 99.6 2.8E-16 6E-21 155.9 6.9 66 70-136 3-68 (372)
36 PRK14292 chaperone protein Dna 99.6 3.3E-16 7.1E-21 155.3 7.3 66 70-136 2-67 (371)
37 PRK10266 curved DNA-binding pr 99.6 4.6E-16 1E-20 150.6 7.4 66 70-136 4-69 (306)
38 PRK14293 chaperone protein Dna 99.6 4.5E-16 9.8E-21 154.5 7.1 66 70-136 3-68 (374)
39 smart00271 DnaJ DnaJ molecular 99.6 1.2E-15 2.7E-20 112.1 6.5 58 70-127 1-59 (60)
40 KOG0718 Molecular chaperone (D 99.6 8.3E-16 1.8E-20 152.4 7.0 71 68-138 7-80 (546)
41 KOG0719 Molecular chaperone (D 99.6 7.4E-16 1.6E-20 141.4 5.6 80 69-148 13-94 (264)
42 PTZ00341 Ring-infected erythro 99.6 1.7E-15 3.8E-20 161.3 8.0 69 68-137 571-639 (1136)
43 cd06257 DnaJ DnaJ domain or J- 99.6 3E-15 6.6E-20 108.0 6.8 55 71-125 1-55 (55)
44 PHA03102 Small T antigen; Revi 99.5 8.1E-15 1.8E-19 128.4 5.3 65 70-138 5-71 (153)
45 COG2214 CbpA DnaJ-class molecu 99.5 1.8E-14 3.8E-19 128.7 7.4 69 68-136 4-73 (237)
46 KOG0721 Molecular chaperone (D 99.5 1.7E-14 3.7E-19 131.2 7.2 73 65-137 94-166 (230)
47 TIGR03835 termin_org_DnaJ term 99.5 5.8E-14 1.3E-18 147.0 8.3 67 70-137 2-68 (871)
48 PRK05014 hscB co-chaperone Hsc 99.4 2.1E-13 4.5E-18 121.9 7.5 66 70-135 1-73 (171)
49 PRK01356 hscB co-chaperone Hsc 99.4 3.7E-13 7.9E-18 119.8 7.5 66 70-135 2-72 (166)
50 PRK03578 hscB co-chaperone Hsc 99.4 6.4E-13 1.4E-17 119.2 8.1 67 69-135 5-78 (176)
51 PRK00294 hscB co-chaperone Hsc 99.4 7E-13 1.5E-17 118.6 7.9 68 68-135 2-76 (173)
52 KOG0624 dsRNA-activated protei 99.4 1.3E-12 2.9E-17 126.5 7.7 68 68-135 392-462 (504)
53 KOG0720 Molecular chaperone (D 99.3 3.5E-12 7.5E-17 126.9 6.4 68 67-135 232-299 (490)
54 PTZ00100 DnaJ chaperone protei 99.3 7.4E-12 1.6E-16 104.8 6.0 54 67-124 62-115 (116)
55 KOG0722 Molecular chaperone (D 99.2 4.3E-12 9.4E-17 118.0 3.7 67 68-135 31-97 (329)
56 COG1141 Fer Ferredoxin [Energy 99.2 1.4E-11 2.9E-16 93.8 3.0 59 155-214 2-68 (68)
57 KOG0714 Molecular chaperone (D 99.2 2.4E-11 5.1E-16 113.7 5.0 69 69-137 2-71 (306)
58 PF13370 Fer4_13: 4Fe-4S singl 99.2 5.4E-12 1.2E-16 93.3 0.5 55 158-212 1-58 (58)
59 PRK09430 djlA Dna-J like membr 99.1 5E-11 1.1E-15 113.6 6.0 59 67-125 197-262 (267)
60 KOG0550 Molecular chaperone (D 99.1 4.2E-11 9E-16 118.3 5.5 68 68-135 371-439 (486)
61 PF13459 Fer4_15: 4Fe-4S singl 99.1 2.8E-11 6E-16 91.2 3.0 56 156-212 1-65 (65)
62 PHA02624 large T antigen; Prov 99.1 7.3E-11 1.6E-15 122.5 5.9 60 69-132 10-71 (647)
63 PRK01773 hscB co-chaperone Hsc 99.1 1.8E-10 3.8E-15 103.2 7.5 65 70-134 2-73 (173)
64 COG5269 ZUO1 Ribosome-associat 99.0 2E-10 4.3E-15 107.9 5.0 116 65-197 38-158 (379)
65 TIGR00714 hscB Fe-S protein as 98.9 2.9E-09 6.3E-14 94.0 6.6 56 81-136 2-62 (157)
66 COG5407 SEC63 Preprotein trans 98.9 1.6E-09 3.5E-14 107.8 5.3 69 68-136 96-169 (610)
67 KOG1150 Predicted molecular ch 98.8 1.1E-08 2.4E-13 92.5 7.0 69 65-133 48-117 (250)
68 KOG0568 Molecular chaperone (D 98.6 1.4E-08 3E-13 93.7 0.7 58 67-125 44-102 (342)
69 KOG1789 Endocytosis protein RM 98.1 2.9E-06 6.3E-11 91.8 5.6 55 67-124 1278-1336(2235)
70 KOG0723 Molecular chaperone (D 98.1 7.5E-06 1.6E-10 67.3 5.7 61 62-126 48-108 (112)
71 PF06902 Fer4_19: Divergent 4F 97.8 2.3E-05 5E-10 59.2 3.6 57 155-214 7-63 (64)
72 KOG3192 Mitochondrial J-type c 97.3 0.00031 6.8E-09 61.6 4.7 67 68-134 6-79 (168)
73 TIGR02494 PFLE_PFLC glycyl-rad 97.0 0.00049 1.1E-08 65.9 3.3 96 153-251 40-140 (295)
74 PF14697 Fer4_21: 4Fe-4S diclu 96.4 0.0004 8.6E-09 51.5 -1.8 53 157-212 2-59 (59)
75 COG1146 Ferredoxin [Energy pro 96.1 0.0038 8.3E-08 47.1 2.2 59 157-216 4-64 (68)
76 PRK09626 oorD 2-oxoglutarate-a 96.0 0.0024 5.1E-08 52.3 0.8 69 154-224 9-86 (103)
77 COG1076 DjlA DnaJ-domain-conta 96.0 0.0048 1E-07 55.2 2.6 64 71-134 2-72 (174)
78 COG1076 DjlA DnaJ-domain-conta 95.9 0.0061 1.3E-07 54.6 2.8 54 70-123 113-173 (174)
79 COG1142 HycB Fe-S-cluster-cont 95.8 0.0024 5.2E-08 56.9 -0.1 67 153-219 74-145 (165)
80 PRK08348 NADH-plastoquinone ox 95.8 0.0053 1.1E-07 51.5 1.9 61 153-215 34-95 (120)
81 COG1143 NuoI Formate hydrogenl 95.7 0.0026 5.6E-08 57.2 -0.3 65 153-217 47-119 (172)
82 CHL00065 psaC photosystem I su 95.6 0.0035 7.5E-08 48.9 0.2 59 157-215 5-68 (81)
83 TIGR02512 Fe_only_hydrog hydro 95.6 0.0026 5.6E-08 63.6 -0.8 90 156-250 2-105 (374)
84 PLN00071 photosystem I subunit 95.2 0.0057 1.2E-07 47.5 0.3 58 157-214 5-67 (81)
85 KOG0431 Auxilin-like protein a 95.1 0.022 4.9E-07 58.4 4.4 43 80-122 398-447 (453)
86 PRK10076 pyruvate formate lyas 95.1 0.011 2.4E-07 54.8 1.9 50 202-253 4-55 (213)
87 TIGR02060 aprB adenosine phosp 95.1 0.013 2.8E-07 50.5 2.0 65 156-221 3-73 (132)
88 PF13187 Fer4_9: 4Fe-4S diclus 94.9 0.0058 1.3E-07 43.7 -0.6 48 162-210 1-55 (55)
89 TIGR03048 PS_I_psaC photosyste 94.8 0.011 2.4E-07 45.8 0.8 59 156-214 3-66 (80)
90 PRK09625 porD pyruvate flavodo 94.6 0.012 2.7E-07 50.5 0.8 72 155-228 53-124 (133)
91 PRK02651 photosystem I subunit 94.6 0.013 2.8E-07 45.4 0.8 57 158-214 6-67 (81)
92 PRK00783 DNA-directed RNA poly 94.5 0.031 6.8E-07 53.1 3.3 95 155-266 164-259 (263)
93 PF03656 Pam16: Pam16; InterP 94.4 0.084 1.8E-06 45.2 5.3 58 67-128 55-112 (127)
94 COG0437 HybA Fe-S-cluster-cont 94.4 0.021 4.5E-07 52.6 1.7 66 153-221 92-164 (203)
95 COG3592 Uncharacterized conser 94.4 0.042 9.2E-07 41.9 3.0 56 155-213 17-72 (74)
96 TIGR03315 Se_ygfK putative sel 94.3 0.015 3.2E-07 65.0 0.8 80 159-247 879-968 (1012)
97 TIGR00403 ndhI NADH-plastoquin 94.2 0.034 7.3E-07 50.3 2.7 65 154-219 55-128 (183)
98 PRK07569 bidirectional hydroge 94.1 0.11 2.5E-06 48.5 6.1 62 154-215 139-212 (234)
99 TIGR02936 fdxN_nitrog ferredox 93.9 0.022 4.8E-07 44.9 0.8 60 153-213 13-90 (91)
100 TIGR01582 FDH-beta formate deh 93.8 0.022 4.9E-07 55.0 0.8 70 154-223 117-190 (283)
101 PRK13984 putative oxidoreducta 93.8 0.024 5.1E-07 59.9 1.0 59 156-215 40-108 (604)
102 PRK08222 hydrogenase 4 subunit 93.7 0.017 3.8E-07 52.1 -0.2 67 153-219 30-99 (181)
103 PRK09623 vorD 2-ketoisovalerat 93.6 0.023 4.9E-07 46.8 0.4 59 155-216 45-104 (105)
104 KOG3256 NADH:ubiquinone oxidor 93.5 0.016 3.4E-07 51.6 -0.8 77 137-213 87-170 (212)
105 PRK08318 dihydropyrimidine deh 93.4 0.037 7.9E-07 56.0 1.6 61 154-216 335-401 (420)
106 PRK06991 ferredoxin; Provision 93.4 0.046 9.9E-07 52.5 2.1 59 154-215 78-137 (270)
107 TIGR02179 PorD_KorD 2-oxoacid: 93.3 0.026 5.7E-07 43.3 0.3 57 156-215 20-77 (78)
108 PF13247 Fer4_11: 4Fe-4S diclu 93.1 0.011 2.4E-07 48.3 -2.2 60 153-214 32-97 (98)
109 PRK12387 formate hydrogenlyase 92.8 0.044 9.5E-07 49.2 0.9 66 154-220 31-100 (180)
110 TIGR01971 NuoI NADH-quinone ox 92.8 0.024 5.1E-07 47.3 -0.8 57 161-218 43-107 (122)
111 PF12797 Fer4_2: 4Fe-4S bindin 91.8 0.046 1E-06 32.7 -0.1 19 156-174 3-21 (22)
112 PRK05888 NADH dehydrogenase su 91.8 0.09 1.9E-06 46.5 1.7 54 162-216 59-120 (164)
113 TIGR02163 napH_ ferredoxin-typ 91.7 0.12 2.6E-06 49.0 2.5 54 159-213 199-254 (255)
114 PF12837 Fer4_6: 4Fe-4S bindin 91.6 0.033 7.1E-07 33.9 -0.9 20 156-175 2-21 (24)
115 PTZ00305 NADH:ubiquinone oxido 91.5 0.032 6.8E-07 54.1 -1.6 71 155-225 206-285 (297)
116 TIGR03224 benzo_boxA benzoyl-C 91.5 0.1 2.2E-06 52.9 1.9 54 155-212 4-58 (411)
117 COG1144 Pyruvate:ferredoxin ox 91.5 0.075 1.6E-06 42.7 0.7 57 155-216 29-89 (91)
118 PRK05113 electron transport co 91.4 0.099 2.2E-06 47.6 1.6 60 154-216 107-167 (191)
119 PRK09477 napH quinol dehydroge 91.3 0.13 2.8E-06 49.3 2.3 56 158-215 205-264 (271)
120 CHL00014 ndhI NADH dehydrogena 91.3 0.13 2.9E-06 45.7 2.2 66 154-219 52-125 (167)
121 PRK09624 porD pyuvate ferredox 91.0 0.049 1.1E-06 44.8 -0.8 56 157-215 47-103 (105)
122 cd07030 RNAP_D D subunit of Ar 90.8 0.19 4E-06 47.7 2.9 88 161-264 169-257 (259)
123 PRK09898 hypothetical protein; 90.8 0.16 3.5E-06 46.6 2.3 59 155-219 148-207 (208)
124 TIGR02951 DMSO_dmsB DMSO reduc 90.7 0.14 3.1E-06 44.9 1.8 62 155-218 89-156 (161)
125 PRK10882 hydrogenase 2 protein 90.5 0.17 3.7E-06 50.0 2.3 64 154-218 136-210 (328)
126 PRK14028 pyruvate ferredoxin o 90.3 0.13 2.9E-06 50.0 1.4 61 155-215 241-311 (312)
127 TIGR01944 rnfB electron transp 90.2 0.16 3.4E-06 45.1 1.7 57 154-213 106-163 (165)
128 TIGR00402 napF ferredoxin-type 89.7 0.09 2E-06 42.8 -0.2 58 158-216 31-89 (101)
129 TIGR03149 cyt_nit_nrfC cytochr 89.5 0.21 4.6E-06 46.5 2.0 60 155-217 119-186 (225)
130 TIGR03149 cyt_nit_nrfC cytochr 89.4 0.067 1.5E-06 49.9 -1.4 61 154-214 39-115 (225)
131 PRK12769 putative oxidoreducta 89.4 0.19 4E-06 53.8 1.8 65 155-221 79-153 (654)
132 PRK14993 tetrathionate reducta 89.3 0.15 3.2E-06 48.2 0.9 60 155-217 124-190 (244)
133 PRK08764 ferredoxin; Provision 89.2 0.22 4.7E-06 42.8 1.7 53 157-212 81-134 (135)
134 PRK09129 NADH dehydrogenase su 89.1 0.24 5.2E-06 54.0 2.4 61 154-214 137-205 (776)
135 COG3383 Uncharacterized anaero 89.1 0.21 4.5E-06 54.0 1.8 113 84-211 81-210 (978)
136 PRK10194 ferredoxin-type prote 88.3 0.14 3.1E-06 45.1 0.0 55 159-214 32-87 (163)
137 PRK10330 formate dehydrogenase 88.3 0.26 5.5E-06 44.1 1.7 70 155-224 81-166 (181)
138 COG1145 NapF Ferredoxin [Energ 88.2 0.3 6.5E-06 38.3 1.8 59 157-216 25-86 (99)
139 TIGR02700 flavo_MJ0208 archaeo 87.9 0.15 3.2E-06 47.7 -0.1 59 156-218 143-202 (234)
140 PF13237 Fer4_10: 4Fe-4S diclu 87.6 0.16 3.6E-06 35.8 -0.0 20 156-175 2-21 (52)
141 PRK06273 ferredoxin; Provision 87.3 0.17 3.6E-06 45.2 -0.2 54 157-212 45-110 (165)
142 TIGR01973 NuoG NADH-quinone ox 87.2 0.37 8.1E-06 51.0 2.3 60 155-214 136-203 (603)
143 PRK08166 NADH dehydrogenase su 86.7 0.44 9.5E-06 52.6 2.6 61 154-214 142-210 (847)
144 PRK08493 NADH dehydrogenase su 85.7 0.28 6.1E-06 54.0 0.5 22 155-176 135-156 (819)
145 PF00037 Fer4: 4Fe-4S binding 85.6 0.15 3.3E-06 30.8 -0.9 19 157-175 2-20 (24)
146 PRK12809 putative oxidoreducta 85.5 0.34 7.3E-06 51.7 1.0 67 155-223 79-147 (639)
147 PRK07860 NADH dehydrogenase su 83.4 0.26 5.5E-06 54.2 -1.1 59 155-213 144-210 (797)
148 TIGR03336 IOR_alpha indolepyru 83.3 0.82 1.8E-05 48.5 2.7 51 154-210 543-595 (595)
149 PRK09130 NADH dehydrogenase su 83.1 0.3 6.6E-06 52.7 -0.7 60 154-213 138-205 (687)
150 COG2878 Predicted NADH:ubiquin 82.7 0.23 5E-06 45.0 -1.5 61 152-216 106-168 (198)
151 TIGR02912 sulfite_red_C sulfit 82.4 0.47 1E-05 46.2 0.4 55 156-214 164-222 (314)
152 PRK07118 ferredoxin; Validated 81.8 0.57 1.2E-05 45.2 0.8 61 154-214 161-234 (280)
153 TIGR02745 ccoG_rdxA_fixG cytoc 81.5 0.74 1.6E-05 47.2 1.5 48 160-216 230-277 (434)
154 TIGR03478 DMSO_red_II_bet DMSO 80.6 0.39 8.4E-06 47.2 -0.9 21 155-175 156-176 (321)
155 PRK07118 ferredoxin; Validated 80.3 0.94 2E-05 43.7 1.7 54 159-216 211-265 (280)
156 PRK13795 hypothetical protein; 79.4 0.63 1.4E-05 49.9 0.2 55 156-212 576-631 (636)
157 TIGR01660 narH nitrate reducta 78.9 1.7 3.6E-05 44.9 3.0 57 155-213 175-234 (492)
158 PF12800 Fer4_4: 4Fe-4S bindin 77.1 1.8 3.8E-05 24.1 1.5 15 161-175 2-16 (17)
159 PF14697 Fer4_21: 4Fe-4S diclu 76.4 1.8 3.8E-05 31.9 1.8 20 155-174 33-52 (59)
160 KOG0724 Zuotin and related mol 75.9 2.7 6E-05 41.1 3.5 54 82-135 4-61 (335)
161 PRK09476 napG quinol dehydroge 75.7 0.75 1.6E-05 43.8 -0.5 54 161-214 59-120 (254)
162 PF11833 DUF3353: Protein of u 74.3 5.6 0.00012 36.5 4.8 40 79-126 1-40 (194)
163 PRK13029 2-oxoacid ferredoxin 73.9 2.1 4.5E-05 49.0 2.3 51 153-207 649-705 (1186)
164 COG1034 NuoG NADH dehydrogenas 73.9 0.67 1.5E-05 50.1 -1.4 70 158-228 141-218 (693)
165 PF13446 RPT: A repeated domai 73.1 6 0.00013 29.0 4.0 27 70-96 5-31 (62)
166 PF14687 DUF4460: Domain of un 73.1 7.4 0.00016 32.6 4.9 44 81-124 5-52 (112)
167 PRK15449 ferredoxin-like prote 72.3 1.7 3.7E-05 35.4 0.9 24 153-176 53-76 (95)
168 PRK10194 ferredoxin-type prote 71.5 2 4.2E-05 37.8 1.2 51 163-214 106-159 (163)
169 TIGR03287 methan_mark_16 putat 70.7 3.6 7.7E-05 41.7 2.9 57 154-216 295-353 (391)
170 TIGR03294 FrhG coenzyme F420 h 70.2 1.7 3.6E-05 40.7 0.5 52 156-211 169-221 (228)
171 PRK09193 indolepyruvate ferred 70.0 2.7 5.9E-05 48.0 2.2 52 153-208 635-692 (1165)
172 TIGR02176 pyruv_ox_red pyruvat 68.7 2.7 5.9E-05 48.2 1.8 60 157-216 679-764 (1165)
173 PRK12771 putative glutamate sy 67.8 2.6 5.6E-05 44.3 1.3 56 157-214 500-562 (564)
174 TIGR01660 narH nitrate reducta 66.2 2.2 4.7E-05 44.0 0.4 57 155-213 208-270 (492)
175 PRK13030 2-oxoacid ferredoxin 65.3 3.7 8E-05 47.0 2.0 56 153-213 621-682 (1159)
176 PRK12769 putative oxidoreducta 64.3 2.3 5E-05 45.5 0.2 17 198-214 90-106 (654)
177 TIGR00314 cdhA CO dehydrogenas 63.0 7.9 0.00017 42.5 3.9 81 155-241 393-479 (784)
178 COG1148 HdrA Heterodisulfide r 61.2 4.1 8.9E-05 42.5 1.3 60 156-221 556-615 (622)
179 COG4231 Indolepyruvate ferredo 61.1 4.9 0.00011 42.9 1.8 56 155-216 571-631 (640)
180 PRK13409 putative ATPase RIL; 60.5 4.2 9E-05 43.3 1.2 22 153-174 41-62 (590)
181 PF13746 Fer4_18: 4Fe-4S diclu 60.2 4 8.7E-05 30.9 0.8 21 159-179 48-68 (69)
182 COG1149 MinD superfamily P-loo 60.2 2.4 5.2E-05 40.9 -0.5 59 155-215 63-121 (284)
183 TIGR03278 methan_mark_10 putat 58.9 15 0.00032 37.5 4.8 36 205-242 42-77 (404)
184 COG4231 Indolepyruvate ferredo 58.5 4.3 9.3E-05 43.3 0.9 25 153-177 600-624 (640)
185 cd01916 ACS_1 Acetyl-CoA synth 55.9 25 0.00054 38.6 6.1 52 158-209 362-419 (731)
186 TIGR03478 DMSO_red_II_bet DMSO 54.7 12 0.00026 37.0 3.2 62 152-215 120-184 (321)
187 PRK12814 putative NADPH-depend 53.2 4 8.7E-05 43.8 -0.3 22 155-176 610-631 (652)
188 COG2768 Uncharacterized Fe-S c 51.6 13 0.00027 36.7 2.7 58 152-213 184-241 (354)
189 COG1245 Predicted ATPase, RNas 51.4 5.4 0.00012 41.5 0.3 18 157-174 46-63 (591)
190 COG0479 FrdB Succinate dehydro 51.3 5.4 0.00012 37.7 0.2 69 83-190 102-170 (234)
191 TIGR01582 FDH-beta formate deh 50.6 15 0.00033 35.5 3.2 55 158-215 88-146 (283)
192 COG1148 HdrA Heterodisulfide r 50.0 7.8 0.00017 40.6 1.2 60 154-216 218-294 (622)
193 PRK12809 putative oxidoreducta 48.1 4.8 0.0001 43.0 -0.7 52 159-214 52-106 (639)
194 COG1144 Pyruvate:ferredoxin ox 47.6 7.4 0.00016 31.4 0.4 18 158-175 63-80 (91)
195 PRK14993 tetrathionate reducta 47.5 21 0.00045 33.8 3.5 53 160-215 97-152 (244)
196 COG1143 NuoI Formate hydrogenl 46.8 10 0.00022 34.2 1.2 23 154-176 88-110 (172)
197 KOG3256 NADH:ubiquinone oxidor 46.7 8.2 0.00018 34.7 0.6 22 155-176 144-165 (212)
198 COG1453 Predicted oxidoreducta 46.5 52 0.0011 33.3 6.2 85 84-181 280-371 (391)
199 COG1146 Ferredoxin [Energy pro 44.1 8.7 0.00019 28.6 0.3 24 153-176 33-56 (68)
200 TIGR00397 mauM_napG MauM/NapG 44.1 10 0.00022 35.1 0.8 59 156-216 126-200 (213)
201 TIGR02936 fdxN_nitrog ferredox 42.6 9.2 0.0002 29.8 0.3 19 157-175 66-84 (91)
202 PRK09476 napG quinol dehydroge 42.4 5.9 0.00013 37.7 -1.0 58 156-214 132-207 (254)
203 PF12798 Fer4_3: 4Fe-4S bindin 40.0 6.5 0.00014 21.2 -0.6 12 163-174 1-12 (15)
204 COG1149 MinD superfamily P-loo 39.9 15 0.00033 35.6 1.3 22 155-176 93-114 (284)
205 PF12838 Fer4_7: 4Fe-4S diclus 39.4 8.4 0.00018 26.9 -0.3 22 154-175 29-50 (52)
206 COG2221 DsrA Dissimilatory sul 38.1 13 0.00029 36.5 0.7 35 155-190 195-230 (317)
207 KOG1608 Protein transporter of 37.4 16 0.00035 35.8 1.1 25 315-340 320-347 (374)
208 PRK09853 putative selenate red 37.2 13 0.00027 42.3 0.4 15 160-174 925-939 (1019)
209 PRK09898 hypothetical protein; 36.7 18 0.00039 33.1 1.3 57 156-214 116-175 (208)
210 TIGR02066 dsrB sulfite reducta 36.5 15 0.00031 36.6 0.7 22 154-175 207-228 (341)
211 PRK09853 putative selenate red 34.5 30 0.00065 39.4 2.8 68 156-226 881-959 (1019)
212 COG5552 Uncharacterized conser 33.4 1.5E+02 0.0032 23.3 5.6 31 69-99 2-32 (88)
213 TIGR00397 mauM_napG MauM/NapG 31.2 18 0.00038 33.5 0.3 20 156-175 170-189 (213)
214 PRK13552 frdB fumarate reducta 31.1 26 0.00056 33.0 1.4 22 162-184 150-171 (239)
215 TIGR02176 pyruv_ox_red pyruvat 30.3 21 0.00045 41.3 0.7 21 156-176 734-754 (1165)
216 TIGR00403 ndhI NADH-plastoquin 30.0 21 0.00045 32.2 0.5 26 157-182 98-124 (183)
217 PRK10330 formate dehydrogenase 29.9 11 0.00024 33.5 -1.3 22 154-175 3-24 (181)
218 KOG3442 Uncharacterized conser 29.4 89 0.0019 26.8 4.1 51 70-124 59-109 (132)
219 PRK05888 NADH dehydrogenase su 29.0 26 0.00056 30.8 0.9 19 157-175 93-111 (164)
220 TIGR02064 dsrA sulfite reducta 28.4 37 0.00081 34.6 2.1 35 155-189 266-300 (402)
221 PRK09625 porD pyruvate flavodo 28.3 17 0.00036 31.1 -0.4 20 157-176 85-104 (133)
222 TIGR02912 sulfite_red_C sulfit 27.4 32 0.0007 33.4 1.4 23 155-177 195-217 (314)
223 PRK06273 ferredoxin; Provision 27.0 31 0.00067 30.7 1.1 21 156-176 86-106 (165)
224 PRK08318 dihydropyrimidine deh 26.6 23 0.00049 35.8 0.2 25 156-180 372-398 (420)
225 TIGR01971 NuoI NADH-quinone ox 26.4 31 0.00068 28.4 0.9 26 157-182 78-104 (122)
226 PRK06991 ferredoxin; Provision 26.2 22 0.00047 34.3 -0.1 21 156-176 110-130 (270)
227 CHL00014 ndhI NADH dehydrogena 25.9 28 0.0006 30.8 0.6 25 157-181 95-120 (167)
228 PRK09624 porD pyuvate ferredox 25.8 27 0.00059 28.5 0.4 21 156-176 76-96 (105)
229 COG3383 Uncharacterized anaero 25.7 34 0.00073 37.8 1.2 20 157-176 188-207 (978)
230 COG1245 Predicted ATPase, RNas 25.6 40 0.00087 35.3 1.7 62 157-222 7-77 (591)
231 TIGR03294 FrhG coenzyme F420 h 24.6 20 0.00043 33.5 -0.6 27 156-182 198-224 (228)
232 TIGR02951 DMSO_dmsB DMSO reduc 24.4 30 0.00066 30.1 0.5 56 158-215 59-117 (161)
233 PRK09326 F420H2 dehydrogenase 24.2 25 0.00054 34.7 -0.1 25 157-181 8-33 (341)
234 PRK12577 succinate dehydrogena 24.1 46 0.001 32.8 1.8 15 162-176 153-167 (329)
235 PRK07570 succinate dehydrogena 24.1 37 0.00079 32.3 1.0 17 161-177 157-173 (250)
236 PRK05035 electron transport co 23.8 26 0.00055 38.3 -0.1 18 159-176 368-385 (695)
237 COG1152 CdhA CO dehydrogenase/ 23.8 77 0.0017 34.1 3.3 22 161-182 400-421 (772)
238 PF07709 SRR: Seven Residue Re 23.5 72 0.0016 16.7 1.7 13 112-124 2-14 (14)
239 PRK00941 acetyl-CoA decarbonyl 23.3 58 0.0013 36.0 2.5 22 156-177 399-420 (781)
240 PRK14028 pyruvate ferredoxin o 23.1 36 0.00078 33.0 0.8 18 158-175 286-303 (312)
241 TIGR02494 PFLE_PFLC glycyl-rad 22.3 32 0.00069 32.7 0.2 21 155-175 76-96 (295)
242 PRK12387 formate hydrogenlyase 21.3 41 0.00088 30.0 0.7 25 157-181 69-94 (180)
243 TIGR02910 sulfite_red_A sulfit 21.0 43 0.00092 33.3 0.8 23 159-181 299-321 (334)
244 PF07830 PP2C_C: Protein serin 20.4 1.2E+02 0.0025 24.1 3.0 38 216-253 42-79 (81)
245 PF13183 Fer4_8: 4Fe-4S diclus 20.4 16 0.00035 25.7 -1.7 16 161-176 3-18 (57)
246 TIGR03290 CoB_CoM_SS_C CoB--Co 20.4 50 0.0011 28.3 1.1 14 162-175 3-16 (144)
No 1
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.6e-27 Score=217.47 Aligned_cols=237 Identities=29% Similarity=0.347 Sum_probs=164.2
Q ss_pred CCCCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhcccccccC
Q 019284 65 TDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATN 144 (343)
Q Consensus 65 ~~~~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~~~~~~~~ 144 (343)
......|+|+||||+++|+.++||++||+|+++||||+++++|+++++|++||+||+||+||.+|..||.+|++.....+
T Consensus 26 ~~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~e 105 (279)
T KOG0716|consen 26 EDVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLAE 105 (279)
T ss_pred cccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHHH
Confidence 33457899999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred CCCCCCCCCcccccccccc-----------cC-CCCccCCCCcccccccccCceEEecCCCCHHHHHHHHHcCCcccccc
Q 019284 145 PFLDDSCPKDHVFVDEFSC-----------IG-CKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (343)
Q Consensus 145 ~~~~~~~~~~~vfVDe~~C-----------ig-Cg~C~~vaP~vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~ 212 (343)
.+.++..+..+++.+...| .+ |-.|. .|...+... +..-+..+++.++++...|
T Consensus 106 ~fg~d~~~~~~v~~~~~~~~~~a~~dll~g~~~c~~c~-~cc~~~~~~------~~c~~~~~P~~~~~~~~~~------- 171 (279)
T KOG0716|consen 106 QFGEDSKIIYFVFSSPWIKATAACFDLLTGQRHCLCCR-ACCCCCCCN------RFCCGKAKPEVSEQHDYYC------- 171 (279)
T ss_pred hhcccCcceEEEecchhhhHHhhhhhhhhcchhhhhHH-hHhhhhcch------HHHhhccCCccccchhhHH-------
Confidence 8877776666666554443 11 22221 111112111 1122233444455666666
Q ss_pred ccchhhhhHHHHHHHHHhhccceec---cCCCCCCcchHHHHHHHHHhhHHHHHHHHHHHhhccccCCCcccCccccccC
Q 019284 213 TSAQQLSLLEDEMRRVERVNVAMML---SGMGSGSADVFRMASSRWERRQAKVLEQAKIRMMNREKDSDKTVSYWSNIWG 289 (343)
Q Consensus 213 ~~~~~l~~le~~~~~~~~~~v~~~~---~g~G~~~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (343)
....+..+++++....++++.... ++-+.+.+-+|+--++ .++.+.+-+|+. +...+..-++|-
T Consensus 172 -~~s~i~~~~~l~~~~~~~~~~~~~ed~~i~~vs~~~~~v~~~~-------~~~~S~r~~~v~-~~v~~~p~~~~~---- 238 (279)
T KOG0716|consen 172 -HRSRIALLNFLQSNNKRVCLSHLLEDVFIDLVSNGAYDVGFSE-------RVLYSKREVIVG-QPVFDMPISLWI---- 238 (279)
T ss_pred -hhchhhhhhhhhhccccccccccchhhhhhhhhhhhccccccc-------ccccCccchhhC-ceeeccCccccc----
Confidence 444567777777776666544432 2222232322322221 567777778887 777887778886
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccCCccccCC
Q 019284 290 KPKDYRNSVVAEEEVKERSKRAAAAARRWREYSRRGADQPPTFKLPEATTSK 341 (343)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (343)
+|....+ -.-+++.||++..+..+|+|++ +|+|+..+.+
T Consensus 239 ~~~~~~~--~~~~~~~er~~~i~~~~~~~~~-----------~k~~D~~sr~ 277 (279)
T KOG0716|consen 239 KPHSFRT--WSSGNATERTQLIAPLIRSYYY-----------TKLPDSFSRL 277 (279)
T ss_pred cccCccc--ccccccccchhhcCCcccchhh-----------hcCCchhhhc
Confidence 3332221 1456789999999999999998 8888876654
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.4e-22 Score=198.53 Aligned_cols=69 Identities=45% Similarity=0.670 Sum_probs=66.4
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 68 ~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
..+|||+||||+++||.+|||+|||+||++||||+|+.+++++++|++|+|||+|||||++|+.||+++
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG 70 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFG 70 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccC
Confidence 467999999999999999999999999999999999977999999999999999999999999999875
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.5e-21 Score=187.25 Aligned_cols=73 Identities=37% Similarity=0.558 Sum_probs=69.0
Q ss_pred CCCCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhc
Q 019284 65 TDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (343)
Q Consensus 65 ~~~~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~ 137 (343)
.....+|||+||||+.+|+..|||+|||+||++||||+|+++|.+++.|+.|+.||+|||||++|+.||.+|.
T Consensus 11 ~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 11 AVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE 83 (336)
T ss_pred hhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence 3446789999999999999999999999999999999999999999999999999999999999999999863
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=3.5e-19 Score=176.46 Aligned_cols=69 Identities=35% Similarity=0.520 Sum_probs=65.2
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhc
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~ 137 (343)
..|||+||||+++||.+|||+|||+|+++||||+++.+++++++|++|++||+||+||.+|+.||+++.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 369999999999999999999999999999999998767889999999999999999999999999763
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.3e-18 Score=172.56 Aligned_cols=67 Identities=37% Similarity=0.595 Sum_probs=63.6
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||+||+||.+|+.||+++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G 69 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFG 69 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhcc
Confidence 4699999999999999999999999999999999975 778999999999999999999999999975
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.8e-18 Score=172.65 Aligned_cols=68 Identities=40% Similarity=0.628 Sum_probs=65.2
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
..|||+||||+++|+.+|||+|||+|+++||||++++++++++.|++|++||+||+||++|+.||+++
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 47999999999999999999999999999999999877889999999999999999999999999985
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=3.3e-18 Score=169.67 Aligned_cols=69 Identities=32% Similarity=0.525 Sum_probs=65.2
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhc
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~ 137 (343)
..|||+||||+++||.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|+.||+++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence 369999999999999999999999999999999998778899999999999999999999999999763
No 8
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=4.5e-18 Score=164.86 Aligned_cols=66 Identities=39% Similarity=0.611 Sum_probs=63.0
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhc
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~ 137 (343)
.+.||+||||+++||.+|||+|||+|+++||||+|++ +.++|++|..||+|||||++|..||+++.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~ 68 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGE 68 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhh
Confidence 5689999999999999999999999999999999988 88999999999999999999999999863
No 9
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.2e-17 Score=165.60 Aligned_cols=68 Identities=41% Similarity=0.666 Sum_probs=63.8
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-hHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~-~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
..|||+||||+++||.+|||+|||+|+++||||+++.+ ++++++|++|++||+||+||.+|+.||.++
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g 71 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFG 71 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcC
Confidence 46999999999999999999999999999999999764 668899999999999999999999999875
No 10
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.4e-17 Score=165.23 Aligned_cols=68 Identities=34% Similarity=0.621 Sum_probs=63.9
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhc
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~ 137 (343)
..|||+||||+++||.+|||+|||+|+++||||+++. +++++.|+.|++||+||+||.+|+.||+++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~ 70 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGH 70 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence 3699999999999999999999999999999999975 7788999999999999999999999999763
No 11
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.71 E-value=1.6e-17 Score=124.16 Aligned_cols=63 Identities=48% Similarity=0.712 Sum_probs=59.7
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHHHHHHcCChhHHHhhh
Q 019284 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVYD 133 (343)
Q Consensus 71 d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~-~a~~~f~~I~eAY~vLsdp~~R~~YD 133 (343)
|||+||||+++++.++||++|+++++++|||+++.+. .+.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999988854 57899999999999999999999998
No 12
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.3e-17 Score=165.08 Aligned_cols=68 Identities=35% Similarity=0.535 Sum_probs=64.7
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhc
Q 019284 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (343)
Q Consensus 70 ~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~ 137 (343)
.|||+||||+++||.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|..||.++.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~ 70 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGH 70 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence 69999999999999999999999999999999998778889999999999999999999999999753
No 13
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.6e-17 Score=165.49 Aligned_cols=68 Identities=46% Similarity=0.689 Sum_probs=64.8
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
..|||+||||+++||.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|..||.++
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 71 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFG 71 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence 36999999999999999999999999999999999877788999999999999999999999999875
No 14
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.8e-17 Score=164.04 Aligned_cols=68 Identities=40% Similarity=0.633 Sum_probs=64.9
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
..|||+||||+++|+.+|||+|||+|+++||||+++.++++++.|+.|++||+||+||.+|+.||+++
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G 70 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYG 70 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhc
Confidence 46999999999999999999999999999999999877788999999999999999999999999975
No 15
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.8e-17 Score=164.89 Aligned_cols=67 Identities=40% Similarity=0.614 Sum_probs=64.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 70 ~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
.|||+||||+++|+.+|||+|||+|+++||||+++.++++++.|+.|++||+||+||.+|..||+++
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G 70 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFG 70 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcC
Confidence 6999999999999999999999999999999999877788999999999999999999999999975
No 16
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.70 E-value=1.8e-17 Score=166.71 Aligned_cols=65 Identities=42% Similarity=0.600 Sum_probs=60.7
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhc
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~ 137 (343)
..|||+||||+++||.+|||+|||+|+++||||++++ .+.|++|++||+||+||.+|+.||.++.
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~ 91 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGE 91 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence 4699999999999999999999999999999999853 4899999999999999999999999763
No 17
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.3e-17 Score=163.74 Aligned_cols=69 Identities=39% Similarity=0.582 Sum_probs=65.1
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhc
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~ 137 (343)
..|||+||||+++||.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|..||.++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~ 71 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH 71 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence 369999999999999999999999999999999998777889999999999999999999999998753
No 18
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.8e-17 Score=158.07 Aligned_cols=68 Identities=40% Similarity=0.667 Sum_probs=64.0
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhc
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~ 137 (343)
..|||+||||+++||.+|||+|||+|+++||||++++ +.+++.|+.|++||+||+||.+|..||.++.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 4699999999999999999999999999999999975 7789999999999999999999999999764
No 19
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.1e-17 Score=164.15 Aligned_cols=67 Identities=43% Similarity=0.652 Sum_probs=63.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
..|||+||||+++|+.+|||+|||+|+++||||++++ +++++.|++|++||+||+||.+|+.||+++
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G 70 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFG 70 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcC
Confidence 3699999999999999999999999999999999975 678899999999999999999999999975
No 20
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.4e-17 Score=163.97 Aligned_cols=68 Identities=37% Similarity=0.640 Sum_probs=63.8
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhc
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~ 137 (343)
..|||+||||+++||.+|||+|||+|+++||||++++ +.++++|+.|++||+||+||.+|+.||+++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 70 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGA 70 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence 3699999999999999999999999999999999986 6788999999999999999999999999753
No 21
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.9e-17 Score=163.95 Aligned_cols=67 Identities=40% Similarity=0.603 Sum_probs=64.2
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 70 ~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
.|||+||||+++||.+|||+|||+|+++||||++++++.+++.|+.|++||+||+||.+|+.||+++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 67 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYG 67 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 4899999999999999999999999999999999987889999999999999999999999999875
No 22
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.7e-17 Score=163.43 Aligned_cols=67 Identities=40% Similarity=0.593 Sum_probs=63.8
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
..|||+||||+++||.+|||+|||+|+++||||++++ +++++.|++|++||+||+||.+|+.||+++
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G 70 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFG 70 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhc
Confidence 4699999999999999999999999999999999986 778999999999999999999999999975
No 23
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3e-17 Score=163.73 Aligned_cols=66 Identities=44% Similarity=0.638 Sum_probs=63.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhh
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDE 134 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~ 134 (343)
..|||+||||+++||.+|||+|||+|+++||||+++.++++++.|++|++||+||+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 469999999999999999999999999999999998777889999999999999999999999998
No 24
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3.5e-17 Score=162.90 Aligned_cols=67 Identities=45% Similarity=0.740 Sum_probs=63.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.+++.|+.|++||+||+||.+|+.||.++
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g 68 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFG 68 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhc
Confidence 3699999999999999999999999999999999986 678899999999999999999999999875
No 25
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=3.4e-17 Score=162.77 Aligned_cols=66 Identities=36% Similarity=0.554 Sum_probs=63.2
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 70 ~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
.|||+||||+++|+.+|||+|||+|+++||||++++ +++++.|+.|++||+||+||.+|..||+++
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G 68 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRIVDLGG 68 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchhhhhhhhhccC
Confidence 699999999999999999999999999999999985 778999999999999999999999999875
No 26
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.7e-17 Score=155.98 Aligned_cols=71 Identities=38% Similarity=0.586 Sum_probs=67.8
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhccc
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYS 139 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~~~ 139 (343)
..|||+||||+.+++..+|++|||..+++||||+|+++|.+.+.|+.|.+||+||+|+.+|..||.++...
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG 74 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999987543
No 27
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=4.3e-17 Score=161.95 Aligned_cols=67 Identities=39% Similarity=0.595 Sum_probs=63.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhc
Q 019284 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (343)
Q Consensus 70 ~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~ 137 (343)
.|||+||||+++|+.+|||+|||+|+++||||++++ +.+++.|++|++||+||+||.+|..||+++.
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 70 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGH 70 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence 699999999999999999999999999999999876 6789999999999999999999999999753
No 28
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=5.1e-17 Score=161.11 Aligned_cols=68 Identities=41% Similarity=0.623 Sum_probs=64.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
..|||+||||+++||.+|||+|||+|+++||||++++++.+++.|++|++||++|+||.+|..||.++
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g 70 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYG 70 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcc
Confidence 46999999999999999999999999999999999877778999999999999999999999999875
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=4.7e-17 Score=162.72 Aligned_cols=67 Identities=39% Similarity=0.585 Sum_probs=64.2
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 70 ~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
.|||+||||+++|+.+|||+|||+|+++||||++++++++++.|+.|++||+||+||.+|..||.++
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g 69 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFG 69 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 5999999999999999999999999999999999877778899999999999999999999999875
No 30
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.8e-17 Score=161.72 Aligned_cols=78 Identities=37% Similarity=0.506 Sum_probs=68.8
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-hHHHHHHHHHHHHHHHcCChhHHHhhhhhhcccccccCC
Q 019284 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNP 145 (343)
Q Consensus 68 ~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~-~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~~~~~~~~~ 145 (343)
..+.||+||||..+++..+||++||+|||+||||++++. .++++.|+.|+.||+|||||..|..||.+....+.+.++
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~~s 84 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGKNS 84 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCCCC
Confidence 457899999999999999999999999999999998875 568999999999999999999999999886644443333
No 31
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.7e-16 Score=158.22 Aligned_cols=68 Identities=41% Similarity=0.562 Sum_probs=64.9
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
..|||+||||+++|+.+|||+|||+|+++||||+++++++++++|+.|++||++|+||.+|..||.++
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G 71 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFG 71 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhc
Confidence 46999999999999999999999999999999999887889999999999999999999999999875
No 32
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.9e-16 Score=156.72 Aligned_cols=67 Identities=42% Similarity=0.636 Sum_probs=63.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 70 ~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~-~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
.|||+||||+++||.+|||+|||+|+++||||+++.++ ++.+.|+.|++||+||+||.+|..||.++
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G 70 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTG 70 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccC
Confidence 59999999999999999999999999999999998754 68899999999999999999999999875
No 33
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.9e-16 Score=150.80 Aligned_cols=68 Identities=38% Similarity=0.539 Sum_probs=64.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhcc
Q 019284 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (343)
Q Consensus 70 ~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~~ 138 (343)
.|||+||||+++|+..|||+||++|+|+||||.+.+ .++.+.|++|.+||+||+|+++|..||..+..
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 399999999999999999999999999999999998 58999999999999999999999999988643
No 34
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.64 E-value=2.5e-16 Score=155.13 Aligned_cols=65 Identities=48% Similarity=0.712 Sum_probs=61.8
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 71 d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
|||+||||+++|+.+|||+|||+|+++||||+++. +++.+.|+.|++||+||+||.+|..||.++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g 65 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-KEAEEKFKEINEAYEVLSDPEKRAQYDQFG 65 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhhChHHHHhhhhcc
Confidence 79999999999999999999999999999999974 668899999999999999999999999875
No 35
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=2.8e-16 Score=155.95 Aligned_cols=66 Identities=35% Similarity=0.581 Sum_probs=62.6
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 70 ~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
.|||+||||+++||.+|||+|||+|+++||||+++. +.+++.|++|++||++|+|+.+|..||.++
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G 68 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDEQKRAAYDRFG 68 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhHhHhhHHHhcc
Confidence 599999999999999999999999999999999874 668899999999999999999999999975
No 36
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3.3e-16 Score=155.32 Aligned_cols=66 Identities=38% Similarity=0.560 Sum_probs=63.0
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 70 ~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
.|||+||||+++||.++||+|||+|+++||||++++ +.++++|+.|++||+||+||.+|+.||.++
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G 67 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRAHYDRFG 67 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcchhhhhhHhhcC
Confidence 589999999999999999999999999999999985 778999999999999999999999999975
No 37
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.62 E-value=4.6e-16 Score=150.61 Aligned_cols=66 Identities=35% Similarity=0.632 Sum_probs=62.8
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 70 ~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
.|||+||||+++++.+|||+|||+|+++||||+++. +.+++.|++|++||++|+||.+|..||.++
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 699999999999999999999999999999999875 678999999999999999999999999975
No 38
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=4.5e-16 Score=154.55 Aligned_cols=66 Identities=38% Similarity=0.682 Sum_probs=62.8
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 70 ~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
.|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|+.|++||+||+||.+|+.||.++
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g 68 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFG 68 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhcc
Confidence 599999999999999999999999999999999876 668899999999999999999999999875
No 39
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.61 E-value=1.2e-15 Score=112.11 Aligned_cols=58 Identities=43% Similarity=0.622 Sum_probs=54.2
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHHHHHHcCChh
Q 019284 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD-DPETTNFCMFINEVYAVLSDPV 127 (343)
Q Consensus 70 ~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~-~~~a~~~f~~I~eAY~vLsdp~ 127 (343)
.|||+||||+++++.++||++|+++++++|||++++ .+.+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999985 4778899999999999999985
No 40
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=8.3e-16 Score=152.44 Aligned_cols=71 Identities=38% Similarity=0.498 Sum_probs=64.7
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC---hHHHHHHHHHHHHHHHcCChhHHHhhhhhhcc
Q 019284 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD---PETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (343)
Q Consensus 68 ~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~---~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~~ 138 (343)
...|||.+|||+++||.+|||+|||++++.||||+..+. ..+++.|+.|.+||||||||.+|..||.+|..
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~q 80 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQ 80 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhc
Confidence 445999999999999999999999999999999998862 35889999999999999999999999998643
No 41
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.4e-16 Score=141.35 Aligned_cols=80 Identities=35% Similarity=0.440 Sum_probs=69.1
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHHHHHHcCChhHHHhhhhhhcccccccCCC
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSG--DDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPF 146 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~--~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~~~~~~~~~~ 146 (343)
..|+|+||||..+|+..+|++||++|++++|||+++ +..++.+.|+.|+.||+||+|.++|+.||+.|.......+-.
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~idd~~~d~~ 92 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSIDDESGDID 92 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCCCccchhh
Confidence 449999999999999999999999999999999994 456789999999999999999999999999876554433433
Q ss_pred CC
Q 019284 147 LD 148 (343)
Q Consensus 147 ~~ 148 (343)
++
T Consensus 93 ~~ 94 (264)
T KOG0719|consen 93 ED 94 (264)
T ss_pred hH
Confidence 33
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.59 E-value=1.7e-15 Score=161.30 Aligned_cols=69 Identities=22% Similarity=0.347 Sum_probs=64.7
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhc
Q 019284 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (343)
Q Consensus 68 ~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~ 137 (343)
...+||+||||+++||..+||+|||+||++||||+++++ .+.+.|+.|++||+|||||.+|+.||.+|.
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~ 639 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGY 639 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccc
Confidence 467999999999999999999999999999999999874 688899999999999999999999999864
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.59 E-value=3e-15 Score=108.03 Aligned_cols=55 Identities=53% Similarity=0.788 Sum_probs=51.8
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCC
Q 019284 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD 125 (343)
Q Consensus 71 d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsd 125 (343)
|||+||||+++++.++||++|++|++++|||++++...+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999988756688999999999999986
No 44
>PHA03102 Small T antigen; Reviewed
Probab=99.53 E-value=8.1e-15 Score=128.36 Aligned_cols=65 Identities=23% Similarity=0.304 Sum_probs=59.8
Q ss_pred CCchhhcCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhcc
Q 019284 70 DDYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (343)
Q Consensus 70 ~d~Y~iLGv~~~a--s~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~~ 138 (343)
..+|+||||+++| |..+||+|||++++++|||++++ .+.|+.||+||++|+|+.+|..||.++..
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 4689999999999 99999999999999999999754 57999999999999999999999998643
No 45
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.8e-14 Score=128.74 Aligned_cols=69 Identities=43% Similarity=0.655 Sum_probs=64.7
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPE-TTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 68 ~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~-a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
...+||+||||+++++..||+++||+++++||||+++.++. +.+.|..|++||++|+|+.+|..||..+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 45689999999999999999999999999999999998775 8999999999999999999999999863
No 46
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.7e-14 Score=131.22 Aligned_cols=73 Identities=29% Similarity=0.418 Sum_probs=66.6
Q ss_pred CCCCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhc
Q 019284 65 TDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (343)
Q Consensus 65 ~~~~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~ 137 (343)
......|+|+||||++++|..|||+|||+|.++|||||++...+.++.|..|++||+.|+|+..|..|..++.
T Consensus 94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 4456679999999999999999999999999999999998756678899999999999999999999999863
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.48 E-value=5.8e-14 Score=146.96 Aligned_cols=67 Identities=40% Similarity=0.615 Sum_probs=63.3
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhc
Q 019284 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (343)
Q Consensus 70 ~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~ 137 (343)
.|||+||||+++|+.++||++||+|+++||||+++. +.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence 599999999999999999999999999999999887 7788899999999999999999999999753
No 48
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.44 E-value=2.1e-13 Score=121.89 Aligned_cols=66 Identities=24% Similarity=0.434 Sum_probs=58.3
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHHHHHHcCChhHHHhhhhh
Q 019284 70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (343)
Q Consensus 70 ~d~Y~iLGv~~~--as~~eIK~AYr~la~~~HPDk~~~~~~-----a~~~f~~I~eAY~vLsdp~~R~~YD~~ 135 (343)
.|||+||||++. ++..+|+++||++++++|||+....+. +.+.|..||+||++|+||.+|..|+-.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 389999999986 788999999999999999999766432 456889999999999999999999864
No 49
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.42 E-value=3.7e-13 Score=119.76 Aligned_cols=66 Identities=24% Similarity=0.444 Sum_probs=57.6
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCChH---HHHHHHHHHHHHHHcCChhHHHhhhhh
Q 019284 70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE---TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (343)
Q Consensus 70 ~d~Y~iLGv~~~--as~~eIK~AYr~la~~~HPDk~~~~~~---a~~~f~~I~eAY~vLsdp~~R~~YD~~ 135 (343)
.|||+||||++. ++..+|+++|+++++++|||++....+ +.+.+..||+||+||+||.+|..|+..
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 589999999986 789999999999999999999875322 234578999999999999999999864
No 50
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.40 E-value=6.4e-13 Score=119.23 Aligned_cols=67 Identities=25% Similarity=0.418 Sum_probs=58.4
Q ss_pred CCCchhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCChHHH-----HHHHHHHHHHHHcCChhHHHhhhhh
Q 019284 69 ADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPETT-----NFCMFINEVYAVLSDPVQRMVYDEI 135 (343)
Q Consensus 69 ~~d~Y~iLGv~~~--as~~eIK~AYr~la~~~HPDk~~~~~~a~-----~~f~~I~eAY~vLsdp~~R~~YD~~ 135 (343)
..|||+||||++. ++..+|+++|++|++++|||++...+..+ +.+..||+||++|+||.+|..|+..
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~ 78 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH 78 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 4699999999985 68999999999999999999987655443 3458999999999999999999964
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.39 E-value=7e-13 Score=118.65 Aligned_cols=68 Identities=26% Similarity=0.384 Sum_probs=60.3
Q ss_pred CCCCchhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHHHHHHcCChhHHHhhhhh
Q 019284 68 IADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (343)
Q Consensus 68 ~~~d~Y~iLGv~~~--as~~eIK~AYr~la~~~HPDk~~~~~~-----a~~~f~~I~eAY~vLsdp~~R~~YD~~ 135 (343)
...|||++|||++. .+..+|+++||+|++++|||++.+.+. +.+.+..||+||+||+||.+|..|+-.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~ 76 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA 76 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 45799999999987 678999999999999999999876543 456789999999999999999999975
No 52
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.36 E-value=1.3e-12 Score=126.48 Aligned_cols=68 Identities=32% Similarity=0.472 Sum_probs=62.9
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh---HHHHHHHHHHHHHHHcCChhHHHhhhhh
Q 019284 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP---ETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (343)
Q Consensus 68 ~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~---~a~~~f~~I~eAY~vLsdp~~R~~YD~~ 135 (343)
..+|||+||||.++|+..||.+|||++++++|||...+.. .++.+|..|..|-+||+||++|+.||..
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 5679999999999999999999999999999999998843 3788999999999999999999999974
No 53
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.5e-12 Score=126.88 Aligned_cols=68 Identities=28% Similarity=0.369 Sum_probs=64.6
Q ss_pred CCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhh
Q 019284 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (343)
Q Consensus 67 ~~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~ 135 (343)
.+..|+|.+|||+.+++.++||+.||++|...|||||-. +.+++.|+.|+.||++|+|+++|..||..
T Consensus 232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~-~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI-PRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC-hhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 347899999999999999999999999999999999995 88999999999999999999999999975
No 54
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.26 E-value=7.4e-12 Score=104.77 Aligned_cols=54 Identities=30% Similarity=0.417 Sum_probs=48.2
Q ss_pred CCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcC
Q 019284 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLS 124 (343)
Q Consensus 67 ~~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLs 124 (343)
....++|+||||++++|.+|||++||+|++++|||+.++ .+.|.+|++||++|.
T Consensus 62 Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 62 MSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLL 115 (116)
T ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHh
Confidence 344699999999999999999999999999999999543 568899999999995
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4.3e-12 Score=118.05 Aligned_cols=67 Identities=34% Similarity=0.552 Sum_probs=62.5
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhh
Q 019284 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (343)
Q Consensus 68 ~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~ 135 (343)
...|.|+||||.++++..||.+|||+|++++|||++.+ ++..+.|..|..||++|.|...|..||=.
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHH
Confidence 45699999999999999999999999999999999999 66679999999999999999999999954
No 56
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=99.17 E-value=1.4e-11 Score=93.84 Aligned_cols=59 Identities=39% Similarity=0.725 Sum_probs=48.7
Q ss_pred ccccccccccCCCCccCCCCcccccccccCceEEecC--------CCCHHHHHHHHHcCCcccccccc
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ--------CGINEFVQQAIESCPVDCIHRTS 214 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~vF~~edd~G~a~V~~q--------~g~~e~~~eAv~~CPv~AI~~~~ 214 (343)
.+.+|...|||||.|...+|++|.++++ |.+.+..+ ..+.+.+++|+.+||++||+|.+
T Consensus 2 ~v~vDrd~Cigcg~C~~~aPdvF~~~d~-G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~~ 68 (68)
T COG1141 2 RVIVDRDTCIGCGACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVEE 68 (68)
T ss_pred EEEechhhccccchhhhcCCcceeeCCC-cceEeccCccccccCChHHHHHHHHHHHhCCccceEecC
Confidence 3678999999999999999999999988 87755322 22346899999999999999863
No 57
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.4e-11 Score=113.72 Aligned_cols=69 Identities=38% Similarity=0.563 Sum_probs=62.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-hHHHHHHHHHHHHHHHcCChhHHHhhhhhhc
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~-~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~ 137 (343)
..|||.||||.++++.++|++||+++++++|||+++.. ..++..|.+|.+||++|+|+.+|..||.++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46999999999999999999999999999999998774 2455589999999999999999999999875
No 58
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=99.16 E-value=5.4e-12 Score=93.32 Aligned_cols=55 Identities=42% Similarity=0.718 Sum_probs=40.3
Q ss_pred cccccccCCCCccCCCCcccccccccCceEEecCCC---CHHHHHHHHHcCCcccccc
Q 019284 158 VDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCG---INEFVQQAIESCPVDCIHR 212 (343)
Q Consensus 158 VDe~~CigCg~C~~vaP~vF~~edd~G~a~V~~q~g---~~e~~~eAv~~CPv~AI~~ 212 (343)
||...|++||.|+.++|++|.++++.|.+.|+.|.. +.+.+++|+++||++||+|
T Consensus 1 VD~~~Ci~Cg~C~~~aP~vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~v 58 (58)
T PF13370_consen 1 VDRDKCIGCGLCVEIAPDVFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIRV 58 (58)
T ss_dssp E-TTT--S-SHHHHH-TTTEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EEE
T ss_pred CChhhCcCCChHHHhCcHheeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcCC
Confidence 577789999999999999999998856777777732 3468999999999999986
No 59
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.14 E-value=5e-11 Score=113.57 Aligned_cols=59 Identities=25% Similarity=0.379 Sum_probs=51.8
Q ss_pred CCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---C----hHHHHHHHHHHHHHHHcCC
Q 019284 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD---D----PETTNFCMFINEVYAVLSD 125 (343)
Q Consensus 67 ~~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~---~----~~a~~~f~~I~eAY~vLsd 125 (343)
....++|+||||++++|.+|||++||+|+++||||+... + +.++++|+.|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999999999999999643 1 3478999999999999974
No 60
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4.2e-11 Score=118.29 Aligned_cols=68 Identities=32% Similarity=0.557 Sum_probs=64.2
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-hHHHHHHHHHHHHHHHcCChhHHHhhhhh
Q 019284 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (343)
Q Consensus 68 ~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~-~~a~~~f~~I~eAY~vLsdp~~R~~YD~~ 135 (343)
...|||.|||+...++..|||+|||++++.+|||++... .+++..|+.|-+||.+|+||.+|..||..
T Consensus 371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 457999999999999999999999999999999999886 67899999999999999999999999975
No 61
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=99.13 E-value=2.8e-11 Score=91.23 Aligned_cols=56 Identities=46% Similarity=0.825 Sum_probs=48.5
Q ss_pred cccccccccCCCCccCCCCcccccccccCceEEecC---------CCCHHHHHHHHHcCCcccccc
Q 019284 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ---------CGINEFVQQAIESCPVDCIHR 212 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~vF~~edd~G~a~V~~q---------~g~~e~~~eAv~~CPv~AI~~ 212 (343)
|.+|...|+|||.|...+|++|.++++ |.+.++.. ....+.+++|++.||++||+|
T Consensus 1 V~vD~~~C~gcg~C~~~aP~vF~~d~~-g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v 65 (65)
T PF13459_consen 1 VWVDRDRCIGCGLCVELAPEVFELDDD-GKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV 65 (65)
T ss_pred CEEecccCcCccHHHhhCCccEEECCC-CCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence 568999999999999999999999987 88876642 344578999999999999986
No 62
>PHA02624 large T antigen; Provisional
Probab=99.11 E-value=7.3e-11 Score=122.47 Aligned_cols=60 Identities=28% Similarity=0.398 Sum_probs=56.1
Q ss_pred CCCchhhcCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhh
Q 019284 69 ADDYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVY 132 (343)
Q Consensus 69 ~~d~Y~iLGv~~~a--s~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~Y 132 (343)
..++|+||||+++| +.++||+|||+++++||||++++ ++.|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhc
Confidence 45899999999999 99999999999999999999654 67999999999999999999998
No 63
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.11 E-value=1.8e-10 Score=103.24 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=57.1
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHHHHHHcCChhHHHhhhh
Q 019284 70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDE 134 (343)
Q Consensus 70 ~d~Y~iLGv~~~--as~~eIK~AYr~la~~~HPDk~~~~~~-----a~~~f~~I~eAY~vLsdp~~R~~YD~ 134 (343)
.|||++|||++. .+..++++.|++|++++|||+....+. +.+....||+||.+|+||.+|+.|=-
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 589999999986 899999999999999999999876543 34567899999999999999999954
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2e-10 Score=107.87 Aligned_cols=116 Identities=28% Similarity=0.367 Sum_probs=85.7
Q ss_pred CCCCCCCchhhcCCCC---CCCHHHHHHHHHHHHHhcCCCCC--CCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhccc
Q 019284 65 TDAIADDYYAVLGLLP---DATPEQIKKAYYNCMKACHPDLS--GDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYS 139 (343)
Q Consensus 65 ~~~~~~d~Y~iLGv~~---~as~~eIK~AYr~la~~~HPDk~--~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~~~ 139 (343)
..+...|+|.+|||+. .+++.+|.++.++.+.+||||+. +++.+..+.|..|+.||+||+|+.+|..||..
T Consensus 38 k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~---- 113 (379)
T COG5269 38 KNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN---- 113 (379)
T ss_pred hhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc----
Confidence 4567799999999994 58899999999999999999986 33355789999999999999999999999984
Q ss_pred ccccCCCCCCCCCCcccccccccccCCCCccCCCCcccccccccCceEEecCCCCHHH
Q 019284 140 LIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEF 197 (343)
Q Consensus 140 ~~~~~~~~~~~~~~~~vfVDe~~CigCg~C~~vaP~vF~~edd~G~a~V~~q~g~~e~ 197 (343)
+++...+...++.+... ..+...+|+.+..|.....+...|..+.
T Consensus 114 ------df~advppp~~~t~~~F-------fe~w~pvFe~earFSkKqPvPsLg~~ds 158 (379)
T COG5269 114 ------DFDADVPPPRIYTPDEF-------FEVWEPVFEREARFSKKQPVPSLGPSDS 158 (379)
T ss_pred ------ccccCCCCccCCCchhH-------HHHHHHHHHhhhhccccCCCCCCCCchh
Confidence 22223333344443322 2344456888877777666666555443
No 65
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.89 E-value=2.9e-09 Score=94.00 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCh-----HHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 81 DATPEQIKKAYYNCMKACHPDLSGDDP-----ETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 81 ~as~~eIK~AYr~la~~~HPDk~~~~~-----~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
+.+..+|+++|++|++++|||+..... .+.+.+..||+||++|+||.+|..|+...
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l 62 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL 62 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 357889999999999999999865532 25678999999999999999999999753
No 66
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.89 E-value=1.6e-09 Score=107.79 Aligned_cols=69 Identities=28% Similarity=0.338 Sum_probs=62.6
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-----ChHHHHHHHHHHHHHHHcCChhHHHhhhhhh
Q 019284 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD-----DPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (343)
Q Consensus 68 ~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~-----~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~ 136 (343)
..-|+|+|||++.+++..+||++||+|..++||||.+. ..+-++.+..|++||..|+|...|+.|-.+|
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yG 169 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYG 169 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence 45699999999999999999999999999999999776 2457889999999999999999999998764
No 67
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.1e-08 Score=92.54 Aligned_cols=69 Identities=25% Similarity=0.325 Sum_probs=61.9
Q ss_pred CCCCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-hHHHHHHHHHHHHHHHcCChhHHHhhh
Q 019284 65 TDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYD 133 (343)
Q Consensus 65 ~~~~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~-~~a~~~f~~I~eAY~vLsdp~~R~~YD 133 (343)
+..-..|+|+||.|.++.+.++||+.||+|++..|||+|+++ +-+...|-.|.+||.+|-|+..|..-+
T Consensus 48 styfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 48 STYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 345678999999999999999999999999999999999998 568889999999999999998776543
No 68
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.4e-08 Score=93.73 Aligned_cols=58 Identities=21% Similarity=0.436 Sum_probs=51.5
Q ss_pred CCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHH-HcCC
Q 019284 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYA-VLSD 125 (343)
Q Consensus 67 ~~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~-vLsd 125 (343)
..-..||.||||..+++.++++.+|..|++++|||.... ....+.|++|.+||. ||+.
T Consensus 44 e~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 44 EKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHH
Confidence 344689999999999999999999999999999999776 567789999999998 7764
No 69
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.9e-06 Score=91.80 Aligned_cols=55 Identities=24% Similarity=0.399 Sum_probs=47.4
Q ss_pred CCCCCchhhcCCCCC----CCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcC
Q 019284 67 AIADDYYAVLGLLPD----ATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLS 124 (343)
Q Consensus 67 ~~~~d~Y~iLGv~~~----as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLs 124 (343)
....+.|+||.|+-+ -..+.||++|++|+.+||||||+. .-++|..+|+||+.|.
T Consensus 1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---GREMFERVNKAYELLS 1336 (2235)
T ss_pred cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHH
Confidence 344578999999843 345889999999999999999965 7899999999999998
No 70
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=7.5e-06 Score=67.26 Aligned_cols=61 Identities=28% Similarity=0.378 Sum_probs=51.6
Q ss_pred cCCCCCCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCh
Q 019284 62 SASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDP 126 (343)
Q Consensus 62 ~~~~~~~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp 126 (343)
.+.+......--.||||.++++.+.||.|+|+++...|||+.+. | -.-.+||||+++|...
T Consensus 48 GF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-P---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 48 GFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-P---YLASKINEAKDLLEGT 108 (112)
T ss_pred ccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-H---HHHHHHHHHHHHHhcc
Confidence 44555666778899999999999999999999999999999887 3 4456899999999753
No 71
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=97.78 E-value=2.3e-05 Score=59.19 Aligned_cols=57 Identities=28% Similarity=0.418 Sum_probs=47.3
Q ss_pred ccccccccccCCCCccCCCCcccccccccCceEEecCCCCHHHHHHHHHcCCcccccccc
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~ 214 (343)
.|..|...|++-|.|+...|++|...++ |- |.......+.+.++++.||..||.+.+
T Consensus 7 ~V~~d~~~C~hag~Cv~~~p~VFd~~~~-~~--v~~d~a~~~~v~~~v~~CPSGAL~~~~ 63 (64)
T PF06902_consen 7 TVTWDRERCIHAGFCVRGAPEVFDQDDE-PW--VSPDEASAEEVREAVDRCPSGALSYWD 63 (64)
T ss_pred EEEECcCcccchhhhhcCCCCcccCCCC-Cc--CCcCccCHHHHHHHHHcCCccCcEEee
Confidence 4667889999999999999999999876 43 233356778999999999999998754
No 72
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00031 Score=61.60 Aligned_cols=67 Identities=24% Similarity=0.479 Sum_probs=54.4
Q ss_pred CCCCchhhcCCCC--CCCHHHHHHHHHHHHHhcCCCCCCCC-----hHHHHHHHHHHHHHHHcCChhHHHhhhh
Q 019284 68 IADDYYAVLGLLP--DATPEQIKKAYYNCMKACHPDLSGDD-----PETTNFCMFINEVYAVLSDPVQRMVYDE 134 (343)
Q Consensus 68 ~~~d~Y~iLGv~~--~as~~eIK~AYr~la~~~HPDk~~~~-----~~a~~~f~~I~eAY~vLsdp~~R~~YD~ 134 (343)
...+||.++|... ...++.++.-|....+++|||+.+.. ..+.+....||+||.+|.||..|+.|=.
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4568999998764 46677777799999999999995442 2366778999999999999999999954
No 73
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=97.01 E-value=0.00049 Score=65.94 Aligned_cols=96 Identities=20% Similarity=0.331 Sum_probs=57.1
Q ss_pred CcccccccccccCCCCccCCCCccc-cc--ccccCceEEecCCCCHHHHHHHHHcCCccccccccchhhhhHHHHHHHHH
Q 019284 153 KDHVFVDEFSCIGCKNCNNVAPEVF-KI--EEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVE 229 (343)
Q Consensus 153 ~~~vfVDe~~CigCg~C~~vaP~vF-~~--edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l~~le~~~~~~~ 229 (343)
...+.+|...|++|+.|..+||..- .+ ..+.....++. ...-......+..||++||.+.... -..++++..+.
T Consensus 40 ~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~~~~~~~~~~-~~~C~~Cg~C~~~CP~~Ai~~~g~~--~t~eel~~~i~ 116 (295)
T TIGR02494 40 SPELLFKENRCLGCGKCVEVCPAGTARLSELADGRNRIIIR-REKCTHCGKCTEACPSGALSIVGEE--MTVEEVMRVVL 116 (295)
T ss_pred CceEEEccccCCCCchhhhhCcccccccccccCCCcceeec-hhhcCchhHhhccCcHhHHhhhccC--CcHHHHHHHHH
Confidence 3467789999999999999998531 10 11101112222 1122345678999999999986543 23455555555
Q ss_pred hhccceeccCCCC--CCcchHHHH
Q 019284 230 RVNVAMMLSGMGS--GSADVFRMA 251 (343)
Q Consensus 230 ~~~v~~~~~g~G~--~~~~~f~~a 251 (343)
+...++-..++|. ++++||...
T Consensus 117 ~~~~~~~~~~~~V~~sGGEPll~~ 140 (295)
T TIGR02494 117 RDSIFYRNSGGGVTLSGGEPLLQP 140 (295)
T ss_pred HHHHhcccCCCcEEeeCcchhchH
Confidence 5444443334444 568888654
No 74
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=96.38 E-value=0.0004 Score=51.47 Aligned_cols=53 Identities=28% Similarity=0.595 Sum_probs=27.5
Q ss_pred ccccccccCCCCccCCCCc----ccccccccCceEEecCCCCHHHHHHHHHcCCc-ccccc
Q 019284 157 FVDEFSCIGCKNCNNVAPE----VFKIEEDFGRARVYNQCGINEFVQQAIESCPV-DCIHR 212 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~----vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv-~AI~~ 212 (343)
.+|+..|++||.|+..+|. .+.++++ +...+... .-.--..-+..||| +||++
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~~~~~~i~~~~~-~~~~v~~~--~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPDGAIDAIEVDEG-KKVPVNPD--KCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp EE-TTT----SCCCHHCCCCS-S-ECCTTT-TSSECE-T--T--S-SCCCCCSSSTTSEEE
T ss_pred EECcccccChhhHHhHcCccceeeEEecCC-eeEEeccc--cCcCcCcccccCCCccCCCC
Confidence 4788999999999999994 4444443 33233321 11112235578998 99975
No 75
>COG1146 Ferredoxin [Energy production and conversion]
Probab=96.07 E-value=0.0038 Score=47.08 Aligned_cols=59 Identities=31% Similarity=0.508 Sum_probs=42.0
Q ss_pred ccccccccCCCCccCCCCc-ccccccc-cCceEEecCCCCHHHHHHHHHcCCccccccccch
Q 019284 157 FVDEFSCIGCKNCNNVAPE-VFKIEED-FGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~-vF~~edd-~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~ 216 (343)
.+|...|++|+.|..++|. +|.+.++ .+...++..+.-.+ -...+..||++||.+....
T Consensus 4 ~Id~~~C~~c~~C~~~CP~~~~~~~~~~~~~~~~~~~e~C~~-C~~C~~~CP~~aI~~~~~~ 64 (68)
T COG1146 4 VIDYDKCIGCGICVEVCPAGVFDLGEDEGGKPVVARPEECID-CGLCELACPVGAIKVDILR 64 (68)
T ss_pred EECchhcCCCChheeccChhhEEeccccCcceeEeccccCcc-chhhhhhCCcceEEEeccc
Confidence 4678889999999999995 4666543 25555555433222 5677889999999987654
No 76
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=96.02 E-value=0.0024 Score=52.27 Aligned_cols=69 Identities=25% Similarity=0.388 Sum_probs=45.3
Q ss_pred cccccccccccCCCCccCCCCc-ccccccccCc------eEEecCCCCHHHHHHHHHcCCccccccccch--hhhhHHHH
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGR------ARVYNQCGINEFVQQAIESCPVDCIHRTSAQ--QLSLLEDE 224 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~-vF~~edd~G~------a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~--~l~~le~~ 224 (343)
..+.+|...|++|+.|...||. .|.+.+. +. ..++.. ........++..||++||.+.+.. .+..|+..
T Consensus 9 ~~v~id~~~Ci~C~~Cv~aCP~~ai~~~~~-~~~~~~~~~~~i~~-~~C~~C~~C~~~CP~~AI~~~~~~~~~~~~~~~~ 86 (103)
T PRK09626 9 TPVWVDESRCKACDICVSVCPAGVLAMRID-PHAVLGKMIKVVHP-ESCIGCRECELHCPDFAIYVADRKEFKFAKLSKE 86 (103)
T ss_pred CCeEECcccccCCcchhhhcChhhhccccc-cccccCceeeEeCC-ccCCCcCcchhhCChhhEEEecccceeehhcchh
Confidence 4566799999999999999986 5655432 21 112221 112235678999999999998764 34445443
No 77
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.0048 Score=55.24 Aligned_cols=64 Identities=28% Similarity=0.408 Sum_probs=50.4
Q ss_pred CchhhcCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHHHHHHcCChhHHHhhhh
Q 019284 71 DYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDE 134 (343)
Q Consensus 71 d~Y~iLGv~~~a--s~~eIK~AYr~la~~~HPDk~~~~~~-----a~~~f~~I~eAY~vLsdp~~R~~YD~ 134 (343)
+++.++|+.+.+ ..+.++..|+.+++.+|||+....+. ..+.+..+|.||.+|.||..|..|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 455566666543 45668999999999999999877543 33578899999999999999999954
No 78
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.0061 Score=54.61 Aligned_cols=54 Identities=30% Similarity=0.395 Sum_probs=45.8
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-------hHHHHHHHHHHHHHHHc
Q 019284 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-------PETTNFCMFINEVYAVL 123 (343)
Q Consensus 70 ~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~-------~~a~~~f~~I~eAY~vL 123 (343)
.+.|.+||+....+..+|+++|+++...+|||+.... ....+.++.|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999985432 13567888899998753
No 79
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=95.77 E-value=0.0024 Score=56.91 Aligned_cols=67 Identities=27% Similarity=0.418 Sum_probs=43.5
Q ss_pred CcccccccccccCCCCccCCCCcc-ccccccc----CceEEecCCCCHHHHHHHHHcCCccccccccchhhh
Q 019284 153 KDHVFVDEFSCIGCKNCNNVAPEV-FKIEEDF----GRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (343)
Q Consensus 153 ~~~vfVDe~~CigCg~C~~vaP~v-F~~edd~----G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l~ 219 (343)
...+.||+.+||||+.|..+||-. +.+.+.- +.+..-..-...+.--..+.+||++|+..++...|.
T Consensus 74 ~~~v~V~~ekCiGC~~C~~aCPfGai~~~~~~~~~~~~a~KCdlC~~~e~gpaCVe~CP~~AL~lv~~~~~~ 145 (165)
T COG1142 74 DGAVQVDEEKCIGCKLCVVACPFGAITMVSYPVAAKAVAVKCDLCAGREVGPACVEACPTEALELVDEIVLE 145 (165)
T ss_pred CCceEEchhhccCcchhhhcCCcceEEEEeecCcchhhhhhcccccCccCCCceeeeCCHHHhhcccHHHhh
Confidence 467889999999999999999932 3343320 111111111122222668899999999999887633
No 80
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=95.77 E-value=0.0053 Score=51.49 Aligned_cols=61 Identities=25% Similarity=0.545 Sum_probs=41.9
Q ss_pred CcccccccccccCCCCccCCCCc-ccccccccCceEEecCCCCHHHHHHHHHcCCccccccccc
Q 019284 153 KDHVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (343)
Q Consensus 153 ~~~vfVDe~~CigCg~C~~vaP~-vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~ 215 (343)
...+.++...|++|+.|..+||. .+.+.++ +....+. .+.-.....+++.||++||.+...
T Consensus 34 ~g~i~i~~~~Ci~C~~C~~~CP~~ai~~~~~-~~~~~i~-~~~C~~Cg~Cv~~CP~~Ai~~~~~ 95 (120)
T PRK08348 34 RGKILYDVDKCVGCRMCVTVCPAGVFVYLPE-IRKVALW-TGRCVFCGQCVDVCPTGALQMSDD 95 (120)
T ss_pred cceEEECcccCcCcccHHHHCCccceEcccc-ccceEec-CCcCcChhhhHHhCCcCcEEeccc
Confidence 34677899999999999999996 3444432 2222222 222335568999999999998774
No 81
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=95.68 E-value=0.0026 Score=57.15 Aligned_cols=65 Identities=26% Similarity=0.519 Sum_probs=41.0
Q ss_pred CcccccccccccCCCCccCCCCc-ccccccc----cCceEEecC---CCCHHHHHHHHHcCCccccccccchh
Q 019284 153 KDHVFVDEFSCIGCKNCNNVAPE-VFKIEED----FGRARVYNQ---CGINEFVQQAIESCPVDCIHRTSAQQ 217 (343)
Q Consensus 153 ~~~vfVDe~~CigCg~C~~vaP~-vF~~edd----~G~a~V~~q---~g~~e~~~eAv~~CPv~AI~~~~~~~ 217 (343)
+....++...||||+.|..+||. .+.|+.+ .|..++..- .|.---....++.|||+||.....-+
T Consensus 47 RG~~~l~~~~CIgC~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~~t~~~e 119 (172)
T COG1143 47 RGRHVLDRDKCIGCGLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALVLTPEFE 119 (172)
T ss_pred cceeeccccCCcchhHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchhhhcCCccee
Confidence 34556678889999999999994 3444321 122222111 22223455788999999999876543
No 82
>CHL00065 psaC photosystem I subunit VII
Probab=95.60 E-value=0.0035 Score=48.86 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=37.1
Q ss_pred ccccccccCCCCccCCCC-cccccccccC---ceE-EecCCCCHHHHHHHHHcCCccccccccc
Q 019284 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFG---RAR-VYNQCGINEFVQQAIESCPVDCIHRTSA 215 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP-~vF~~edd~G---~a~-V~~q~g~~e~~~eAv~~CPv~AI~~~~~ 215 (343)
.++...|++|+.|..++| +.|.+++..+ ... .......-..-...+..||++||.+...
T Consensus 5 ~~~~~~Ci~Cg~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~ 68 (81)
T CHL00065 5 VKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVY 68 (81)
T ss_pred cCccccCCChhHHHHHCCccchhheeccccccccccccCCCCcCCChhhhhhhcCccccEEEEE
Confidence 456678999999999999 5566643211 111 1111111123467999999999998654
No 83
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=95.57 E-value=0.0026 Score=63.56 Aligned_cols=90 Identities=18% Similarity=0.268 Sum_probs=51.9
Q ss_pred cccccccccCCCCccCCCCccccc-----ccccCceEEec------CCCCHHHHHHHHHcCCccccccccchhhhhHHHH
Q 019284 156 VFVDEFSCIGCKNCNNVAPEVFKI-----EEDFGRARVYN------QCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDE 224 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~vF~~-----edd~G~a~V~~------q~g~~e~~~eAv~~CPv~AI~~~~~~~l~~le~~ 224 (343)
+.+|...|++|+.|..+||..... .++.+...+.. ...........+..||++||... ..++.+
T Consensus 2 i~id~~kCi~Cg~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~-----~~~~~v 76 (374)
T TIGR02512 2 IVRDMSKCIGCGRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEK-----DHVDRV 76 (374)
T ss_pred EEechhhCCcChHhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhh-----ccHHHH
Confidence 457888999999999999966422 11101111110 01112234578999999999876 334555
Q ss_pred HHHHHhhccc-eeccCCCC--CCcchHHH
Q 019284 225 MRRVERVNVA-MMLSGMGS--GSADVFRM 250 (343)
Q Consensus 225 ~~~~~~~~v~-~~~~g~G~--~~~~~f~~ 250 (343)
+..+..++.+ +..+++|. +.++.|++
T Consensus 77 ~~~l~~~~~~~v~~~ap~~~~s~ge~~~~ 105 (374)
T TIGR02512 77 LKALADPKKVVVVQIAPAVRVALGEEFGM 105 (374)
T ss_pred HHHhccccceEEEEeChHHHHHHHHHhCC
Confidence 6555555433 44445454 33556654
No 84
>PLN00071 photosystem I subunit VII; Provisional
Probab=95.24 E-value=0.0057 Score=47.55 Aligned_cols=58 Identities=21% Similarity=0.365 Sum_probs=36.8
Q ss_pred ccccccccCCCCccCCCC-cccccccccC-ceEEe---cCCCCHHHHHHHHHcCCcccccccc
Q 019284 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFG-RARVY---NQCGINEFVQQAIESCPVDCIHRTS 214 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP-~vF~~edd~G-~a~V~---~q~g~~e~~~eAv~~CPv~AI~~~~ 214 (343)
+++...|++|+.|..++| +.+.+++..+ ....+ .....-......++.||++||.+..
T Consensus 5 ~~~~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~ 67 (81)
T PLN00071 5 VKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRV 67 (81)
T ss_pred eEcCCcCcChhHHHHHCCccceeeecccccccccccCcCCCCcCcChhhHHhhcCCccceEee
Confidence 456678999999999999 4566553212 11111 1112222456899999999998754
No 85
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.15 E-value=0.022 Score=58.44 Aligned_cols=43 Identities=28% Similarity=0.379 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCh---H----HHHHHHHHHHHHHH
Q 019284 80 PDATPEQIKKAYYNCMKACHPDLSGDDP---E----TTNFCMFINEVYAV 122 (343)
Q Consensus 80 ~~as~~eIK~AYr~la~~~HPDk~~~~~---~----a~~~f~~I~eAY~v 122 (343)
.=.+..+||++||+..+..||||.+..+ . +++.|-.+++|+..
T Consensus 398 DLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 398 DLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred hccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 4468999999999999999999987752 2 34444455555543
No 86
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=95.15 E-value=0.011 Score=54.77 Aligned_cols=50 Identities=22% Similarity=0.340 Sum_probs=43.8
Q ss_pred HHcCCccccccccchhhhhHHHHHHHHHhhccceeccCCCC--CCcchHHHHHH
Q 019284 202 IESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSGMGS--GSADVFRMASS 253 (343)
Q Consensus 202 v~~CPv~AI~~~~~~~l~~le~~~~~~~~~~v~~~~~g~G~--~~~~~f~~a~~ 253 (343)
++.||.+|+.++... -.+|++|..+.++..||-.+|||. |+++|.+++.+
T Consensus 4 ~~~C~~~a~~~~g~~--~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~f 55 (213)
T PRK10076 4 ADECPSGAFERIGRD--ITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEF 55 (213)
T ss_pred hhhchhhHHHhcCcc--cCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHH
Confidence 578999999999776 678999999999999998789998 78999988753
No 87
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=95.07 E-value=0.013 Score=50.48 Aligned_cols=65 Identities=20% Similarity=0.399 Sum_probs=44.3
Q ss_pred cccccccccCCC-----CccCCCCcc-cccccccCceEEecCCCCHHHHHHHHHcCCccccccccchhhhhH
Q 019284 156 VFVDEFSCIGCK-----NCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLL 221 (343)
Q Consensus 156 vfVDe~~CigCg-----~C~~vaP~v-F~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l~~l 221 (343)
+++++..|++|+ .|..+||.. +.++++...+..+... .-......+..||.+||.+....++..+
T Consensus 3 ~~v~~~~C~gC~~~~~~~Cv~~CP~~ai~~~~~~~~~~~id~~-~C~~Cg~Cv~~CP~~AI~~~~~~~~~~~ 73 (132)
T TIGR02060 3 TFVYPTKCDGCKAGEKTACVYICPNDLMHLDTEIMKAYNIEPD-MCWECYSCVKACPQGAIDVRGYADFAPL 73 (132)
T ss_pred CEEccccccCccCCchhcCHhhcCccceEecCCCceeeecCch-hCccHHHHHHhCCcCceEEECccccccc
Confidence 468899999999 999999964 4455431122233221 2224568999999999999877655444
No 88
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=94.86 E-value=0.0058 Score=43.67 Aligned_cols=48 Identities=27% Similarity=0.605 Sum_probs=27.2
Q ss_pred cccCCCCccCCCCccc-ccccccCceEEecCCC------CHHHHHHHHHcCCcccc
Q 019284 162 SCIGCKNCNNVAPEVF-KIEEDFGRARVYNQCG------INEFVQQAIESCPVDCI 210 (343)
Q Consensus 162 ~CigCg~C~~vaP~vF-~~edd~G~a~V~~q~g------~~e~~~eAv~~CPv~AI 210 (343)
.|++||.|..++|... .++.. +...+..... .=..-...++.||++||
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~-~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDED-GGKKVVDKDNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETT-TTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred CCCCcchHHHHCCccCeEccCc-cccccccccccCCCCCccccHhHHHHHcchhhC
Confidence 4999999999999654 44433 4433333221 11233468999999998
No 89
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=94.77 E-value=0.011 Score=45.85 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=37.0
Q ss_pred cccccccccCCCCccCCCC-cccccccccCc--eEEecC--CCCHHHHHHHHHcCCcccccccc
Q 019284 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGR--ARVYNQ--CGINEFVQQAIESCPVDCIHRTS 214 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP-~vF~~edd~G~--a~V~~q--~g~~e~~~eAv~~CPv~AI~~~~ 214 (343)
++.+...|++|+.|..++| ..|.+++..+. ..+... ...-..-...++.||++||.+..
T Consensus 3 ~~~~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 66 (80)
T TIGR03048 3 SVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVRV 66 (80)
T ss_pred ceecCCcCcCcchHHHHCCccceeeecccccccccccCcCCCCcCcChhHHHHhcCcccCEEEE
Confidence 3456677999999999999 44666532121 111111 12222346899999999998754
No 90
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=94.63 E-value=0.012 Score=50.49 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=43.8
Q ss_pred ccccccccccCCCCccCCCCcccccccccCceEEecCCCCHHHHHHHHHcCCccccccccchhhhhHHHHHHHH
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRV 228 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l~~le~~~~~~ 228 (343)
.+.+|...|++|+.|..+||.......+ +...++.. ..-......++.||++||.+.-..+--..++.+...
T Consensus 53 ~p~~d~~~Ci~C~~C~~~CP~~ai~~~~-~~~~~i~~-~~C~~Cg~Cv~vCP~~a~~l~~~~~~~~~~~~~~~~ 124 (133)
T PRK09625 53 KPVHNNEICINCFNCWVYCPDAAILSRD-KKLKGVDY-SHCKGCGVCVEVCPTNPKSLLMFEEQIENETALTQW 124 (133)
T ss_pred eEEEehhHCcChhhHHHhCCHhheEecC-CceEEeCc-CcCcChhHHHHHCCcCceEEEecCcccchHHHHhhc
Confidence 4456889999999999999965422222 33333332 122345578999999997655443333444455443
No 91
>PRK02651 photosystem I subunit VII; Provisional
Probab=94.63 E-value=0.013 Score=45.41 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=34.8
Q ss_pred cccccccCCCCccCCCC-ccccccccc-CceEEec---CCCCHHHHHHHHHcCCcccccccc
Q 019284 158 VDEFSCIGCKNCNNVAP-EVFKIEEDF-GRARVYN---QCGINEFVQQAIESCPVDCIHRTS 214 (343)
Q Consensus 158 VDe~~CigCg~C~~vaP-~vF~~edd~-G~a~V~~---q~g~~e~~~eAv~~CPv~AI~~~~ 214 (343)
.....|++|+.|..++| ..|.+++.. +...++. ....-..-..+++.||++||.+..
T Consensus 6 ~~~~~Ci~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 67 (81)
T PRK02651 6 KIYDTCIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRV 67 (81)
T ss_pred cccccCCCcchHHHHCCccceecccccccccCcccccCCCCcCCChhhhhhhcCCCceEEEE
Confidence 34567999999999999 445554311 1111111 112222345799999999999743
No 92
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=94.51 E-value=0.031 Score=53.13 Aligned_cols=95 Identities=17% Similarity=0.294 Sum_probs=63.7
Q ss_pred ccccccccccCCCCccCCCCc-ccccccccCceEEecCCCCHHHHHHHHHcCCccccccccchhhhhHHHHHHHHHhhcc
Q 019284 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNV 233 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~-vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l~~le~~~~~~~~~~v 233 (343)
.+.+ ...|.+|+.|...||. +|.+++ +...+... .......+++..||.+||.+....+ .-+
T Consensus 164 ~I~i-~~~C~~C~~C~~~CP~~vi~~~~--~~~~v~~~-~~C~~C~~Ci~~CP~~AI~i~~~~~-------------~~i 226 (263)
T PRK00783 164 RIEV-SEDCDECEKCVEACPRGVLELKE--GKLVVTDL-LNCSLCKLCERACPGKAIRVSDDEN-------------KFI 226 (263)
T ss_pred cccc-cccCCchHHHHHhCCccccEecC--CeEEEeCh-hhCCCchHHHHhCCCCceEEEEcCC-------------eEE
Confidence 3444 6779999999999996 788865 55544432 1122345778889999999876541 012
Q ss_pred ceeccCCCCCCcchHHHHHHHHHhhHHHHHHHH
Q 019284 234 AMMLSGMGSGSADVFRMASSRWERRQAKVLEQA 266 (343)
Q Consensus 234 ~~~~~g~G~~~~~~f~~a~~~~~~~~~~~~~~~ 266 (343)
+-..+.|-.+..+.|-.|...++.+-.+++++.
T Consensus 227 f~vEs~G~l~p~~iv~~A~~~l~~k~~~~~~~~ 259 (263)
T PRK00783 227 FTVESDGSLPVEEILLEALKILKRKADELIEAL 259 (263)
T ss_pred EEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222244444678899898888888887777665
No 93
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=94.39 E-value=0.084 Score=45.21 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=41.7
Q ss_pred CCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhH
Q 019284 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQ 128 (343)
Q Consensus 67 ~~~~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~ 128 (343)
.....-..||||++..+.++|.+.|.+|-...+|++.+. .-.-.+|..|.+.|....+
T Consensus 55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQELK 112 (127)
T ss_dssp --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHHHHH
Confidence 344568899999999999999999999999999998765 4555688899998875543
No 94
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=94.38 E-value=0.021 Score=52.61 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=43.9
Q ss_pred CcccccccccccCCCCccCCCCcc-cccccccCceEEecC-CCCHHHHH-----HHHHcCCccccccccchhhhhH
Q 019284 153 KDHVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQ-CGINEFVQ-----QAIESCPVDCIHRTSAQQLSLL 221 (343)
Q Consensus 153 ~~~vfVDe~~CigCg~C~~vaP~v-F~~edd~G~a~V~~q-~g~~e~~~-----eAv~~CPv~AI~~~~~~~l~~l 221 (343)
...|.+|...||||+.|...||=. -.++.+.+. ... ..-.+.+. ..+++||++||.+.+.+++...
T Consensus 92 dGiV~vd~d~CIGC~yCi~ACPyga~~~~~~~~~---~~KCt~C~~ri~~g~~PaCV~~CP~~A~~fG~~~d~~~~ 164 (203)
T COG0437 92 DGIVLVDKDLCIGCGYCIAACPYGAPQFNPDKGV---VDKCTFCVDRVAVGKLPACVEACPTGALIFGDIDDPKSK 164 (203)
T ss_pred CCEEEecCCcccCchHHHhhCCCCCceeCcccCc---ccccCcchhhHhcCCCCcccccCCcccccccchhhcchh
Confidence 446778999999999999999832 123333232 222 12223333 5789999999998888776654
No 95
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=94.35 E-value=0.042 Score=41.86 Aligned_cols=56 Identities=18% Similarity=0.441 Sum_probs=44.5
Q ss_pred ccccccccccCCCCccCCCCcccccccccCceEEecCCCCHHHHHHHHHcCCccccccc
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~ 213 (343)
.++.+...|...++|+.-.|.+|.+.. .-=+..+..+.+.++..+++||..||...
T Consensus 17 di~fn~~iC~Hs~nCV~Gn~~vF~~~r---kPWI~Pd~~~ve~i~~vi~sCPSGAl~Y~ 72 (74)
T COG3592 17 DIYFNTAICAHSGNCVRGNPKVFNLGR---KPWIMPDAVDVEEIVKVIDTCPSGALKYR 72 (74)
T ss_pred EEEeccceeecccceecCCHhhcccCC---CCccCCCCCCHHHHHHHHHhCCchhhhee
Confidence 445566779999999999999998753 12355567889999999999999998754
No 96
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=94.32 E-value=0.015 Score=65.02 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=54.3
Q ss_pred ccccccC----CCCccCCCCccc--cccc-cc-CceEEecCCCCHHHHHHHHHcCCccccccccchhhhhHHHHHHHHHh
Q 019284 159 DEFSCIG----CKNCNNVAPEVF--KIEE-DF-GRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVER 230 (343)
Q Consensus 159 De~~Cig----Cg~C~~vaP~vF--~~ed-d~-G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l~~le~~~~~~~~ 230 (343)
+...|.+ |+.|..+||..- .++. .+ +...+++........-..+..||++|+.++++ |..+.+
T Consensus 879 ~~~rC~~c~~~Cg~Cv~vCP~~Aii~i~~~~~~~~~~~i~~d~~C~~CG~C~~vCP~~a~~~~gk---------~~~~~k 949 (1012)
T TIGR03315 879 ESQRCLECSYVCEKCVDVCPNRANIVIYVPGFRDQFQIVHLDGMCNECGNCATFCPYDGAPYKDK---------LTLFWL 949 (1012)
T ss_pred ccccccCCCCCCCChhhhCChhhhhccccccccCCceeeecCccccccchHHHhCCCCcccceee---------eeeecc
Confidence 4478996 999999999763 2221 00 11222222222334467899999999999888 777788
Q ss_pred hccceeccCCCC--CCcch
Q 019284 231 VNVAMMLSGMGS--GSADV 247 (343)
Q Consensus 231 ~~v~~~~~g~G~--~~~~~ 247 (343)
+..||..+|||. +++++
T Consensus 950 d~~fy~~sggGvTlsGGE~ 968 (1012)
T TIGR03315 950 EEDFYNSTNSGFLVEDPVV 968 (1012)
T ss_pred hHHHHhccCCcEEEECCCc
Confidence 888988888888 56654
No 97
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=94.21 E-value=0.034 Score=50.34 Aligned_cols=65 Identities=25% Similarity=0.543 Sum_probs=40.6
Q ss_pred cccccccccccCCCCccCCCCcc-cccccccC--------ceEEecCCCCHHHHHHHHHcCCccccccccchhhh
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPEV-FKIEEDFG--------RARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~v-F~~edd~G--------~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l~ 219 (343)
..+.++...|++|+.|..+||.. +.+..+++ ....+ ..+.-......++.||++||.+....++.
T Consensus 55 G~i~~~~~kCi~Cg~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~i-d~~~Ci~Cg~Cv~aCP~~AI~~~~~~e~~ 128 (183)
T TIGR00403 55 GRIHFEFDKCIACEVCVRVCPINLPVVDWEFNKAIKKKQLKNYSI-DFGVCIFCGNCVEYCPTNCLSMTEEYELS 128 (183)
T ss_pred ceEEeCcccCcCcCChhhhCCCCcccccccccccccccccceeec-CcccccCcCchhhhcCCCCeecccccccc
Confidence 45667889999999999999964 21111000 01111 11222244578999999999998765544
No 98
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=94.08 E-value=0.11 Score=48.49 Aligned_cols=62 Identities=19% Similarity=0.407 Sum_probs=40.3
Q ss_pred cccccccccccCCCCccCCCCcc---ccc--ccccCceEEecCC-------CCHHHHHHHHHcCCccccccccc
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPEV---FKI--EEDFGRARVYNQC-------GINEFVQQAIESCPVDCIHRTSA 215 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~v---F~~--edd~G~a~V~~q~-------g~~e~~~eAv~~CPv~AI~~~~~ 215 (343)
..+.+|...|++|+.|...|+.+ +.+ ........+.... ..-......++.||++||.....
T Consensus 139 ~~i~~d~~kCi~Cg~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~~~ 212 (234)
T PRK07569 139 PRFGIDHNRCVLCTRCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRKGS 212 (234)
T ss_pred CcEEeehhhCcCccHHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEecCC
Confidence 45667999999999999999852 222 2221233333211 11123467899999999998766
No 99
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=93.90 E-value=0.022 Score=44.93 Aligned_cols=60 Identities=23% Similarity=0.418 Sum_probs=37.0
Q ss_pred CcccccccccccCCCCccCCCCcc-ccccc--ccC----------c-----eEEecCCCCHHHHHHHHHcCCccccccc
Q 019284 153 KDHVFVDEFSCIGCKNCNNVAPEV-FKIEE--DFG----------R-----ARVYNQCGINEFVQQAIESCPVDCIHRT 213 (343)
Q Consensus 153 ~~~vfVDe~~CigCg~C~~vaP~v-F~~ed--d~G----------~-----a~V~~q~g~~e~~~eAv~~CPv~AI~~~ 213 (343)
...+.+|...|++|+.|..++|.. +.+.. +.+ . ..++.. ..-..-...++.||++||..+
T Consensus 13 ~~~~~i~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~C~~Cg~C~~~CP~~AI~~~ 90 (91)
T TIGR02936 13 QFVTSIDQEKCIGCGRCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVANP-GNCIGCGACARVCPKKCQTHA 90 (91)
T ss_pred ceeEEECHhHCCCcchHHHHcChhhceeeccccccccccccccccccccceeeecCC-ccCcChhhhhhhCCHhHEecC
Confidence 345667999999999999999843 43331 001 1 011211 112234568899999999864
No 100
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=93.80 E-value=0.022 Score=55.00 Aligned_cols=70 Identities=19% Similarity=0.293 Sum_probs=43.8
Q ss_pred cccccccccccCCCCccCCCCc-ccccccccCceEEecCCCCH---HHHHHHHHcCCccccccccchhhhhHHH
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGIN---EFVQQAIESCPVDCIHRTSAQQLSLLED 223 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~-vF~~edd~G~a~V~~q~g~~---e~~~eAv~~CPv~AI~~~~~~~l~~le~ 223 (343)
..+.+|...|++|+.|...||. .+.+++..+....-.--.+. ...-..+..||++||.+.+.+++.....
T Consensus 117 G~V~id~dkCigC~~Cv~aCP~~a~~~~~~~~~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg~~~~~~~~a~ 190 (283)
T TIGR01582 117 GIVDFDHSKCIGCGYCIVGCPFNIPRYDKVDNRPYKCTLCIDRVSVGQEPACVKTCPTNAISFGFKEDMKERAE 190 (283)
T ss_pred CcEEEeHHHCCcchHHHhhCCCCCcEEcCCCCChhhhcccccccccCCCChHhCcccHhhEEECCHHHHHHHHH
Confidence 3567899999999999999985 34454431221100000000 0112578999999999999886665544
No 101
>PRK13984 putative oxidoreductase; Provisional
Probab=93.80 E-value=0.024 Score=59.85 Aligned_cols=59 Identities=22% Similarity=0.541 Sum_probs=37.7
Q ss_pred cccccccccCCCCccCCCCcc-------cccccccCce---EEecCCCCHHHHHHHHHcCCccccccccc
Q 019284 156 VFVDEFSCIGCKNCNNVAPEV-------FKIEEDFGRA---RVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~v-------F~~edd~G~a---~V~~q~g~~e~~~eAv~~CPv~AI~~~~~ 215 (343)
+.+|...|++|+.|...||.. |..++.+|.. .++.. ........+++.||++||++...
T Consensus 40 ~~~d~~~Ci~C~~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i~~-~~c~~c~~c~~~Cp~~Ai~~~~~ 108 (604)
T PRK13984 40 HINDWEKCIGCGTCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDY-GRCSFCALCVDICTTGSLKMTRE 108 (604)
T ss_pred cccChhhCcCccchhhhCCccceEeeccccccccccccccccccCc-ccCcCcchHHhhCCcCcEEecce
Confidence 456888999999999999932 3222222321 11211 11223567999999999998764
No 102
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=93.67 E-value=0.017 Score=52.09 Aligned_cols=67 Identities=21% Similarity=0.347 Sum_probs=41.8
Q ss_pred CcccccccccccCCCCccCCCCcc-cccccc--cCceEEecCCCCHHHHHHHHHcCCccccccccchhhh
Q 019284 153 KDHVFVDEFSCIGCKNCNNVAPEV-FKIEED--FGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (343)
Q Consensus 153 ~~~vfVDe~~CigCg~C~~vaP~v-F~~edd--~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l~ 219 (343)
...+.+|...|++|+.|..+||.. +.++.+ .|...+.-..+.-..-...++.||++||.+...-++.
T Consensus 30 rG~~~~d~~~Ci~Cg~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt~AI~~~~~~~~~ 99 (181)
T PRK08222 30 RGKPDLMPSQCIACGACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELT 99 (181)
T ss_pred cCceEeChhhCcchhHHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCcCeEEeccceeee
Confidence 455678999999999999999854 333322 1111111112222234578899999999988754443
No 103
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=93.62 E-value=0.023 Score=46.75 Aligned_cols=59 Identities=25% Similarity=0.426 Sum_probs=39.8
Q ss_pred ccccccccccCCCCccCCCCcc-cccccccCceEEecCCCCHHHHHHHHHcCCccccccccch
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~v-F~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~ 216 (343)
...++...|++|+.|...+|.. |.+.++ +. .++.. ..-.....+++.||++||.+....
T Consensus 45 ~p~i~~~~Ci~C~~C~~~CP~~ai~~~~~-~~-~~id~-~~C~~Cg~Cv~~CP~~AI~~~~~~ 104 (105)
T PRK09623 45 MPVVDESKCVKCYICWKFCPEPAIYIKED-GY-VAIDY-DYCKGCGICANECPTKAITMVKEE 104 (105)
T ss_pred eEEECcccCccccchhhhCCHhheEecCC-Cc-EEeCc-hhCcCcchhhhhcCcCcEEecccC
Confidence 4567889999999999999864 444433 32 22322 111234568999999999987653
No 104
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=93.49 E-value=0.016 Score=51.60 Aligned_cols=77 Identities=26% Similarity=0.317 Sum_probs=45.1
Q ss_pred cccccccCCCCCCCCCCcccccccccccCCCCccCCCCccc-cc--ccc-cCceEEecCCCCH---HHHHHHHHcCCccc
Q 019284 137 GYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVF-KI--EED-FGRARVYNQCGIN---EFVQQAIESCPVDC 209 (343)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~vfVDe~~CigCg~C~~vaP~vF-~~--edd-~G~a~V~~q~g~~---e~~~eAv~~CPv~A 209 (343)
.|..+..++-|.++......-..+..||.|..|..+||..- .+ +.+ .|..+..+-+-|. .-.--.++.|||+|
T Consensus 87 PfEKgplS~RFRGehalrRyp~geerCIACklCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvda 166 (212)
T KOG3256|consen 87 PFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDA 166 (212)
T ss_pred ccccCCCCcccccchhhhcCCCcchhhhhHHHHHHhCCcccceeeceecCCccccceeecccceeeeeecchhhhCCccc
Confidence 34445556666555555566678888999999999999542 22 211 1432222211111 11234678999999
Q ss_pred cccc
Q 019284 210 IHRT 213 (343)
Q Consensus 210 I~~~ 213 (343)
|...
T Consensus 167 iveg 170 (212)
T KOG3256|consen 167 IVEG 170 (212)
T ss_pred eecc
Confidence 9754
No 105
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=93.41 E-value=0.037 Score=56.01 Aligned_cols=61 Identities=23% Similarity=0.416 Sum_probs=40.0
Q ss_pred cccccccccccCCCCccCCCCc----ccccccccCc-eEEecCCCCHHHHHHHHHcCCc-cccccccch
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPE----VFKIEEDFGR-ARVYNQCGINEFVQQAIESCPV-DCIHRTSAQ 216 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~----vF~~edd~G~-a~V~~q~g~~e~~~eAv~~CPv-~AI~~~~~~ 216 (343)
....+|+..|++|+.|...||. .+.++++ |. ...+.. ........++..||+ +||++....
T Consensus 335 ~~~~~~~~~C~~C~~C~~~Cp~~~~~ai~~~~~-~~~~~~i~~-~~C~~Cg~C~~~CP~~~Ai~~~~~~ 401 (420)
T PRK08318 335 VYARIDQDKCIGCGRCYIACEDTSHQAIEWDED-GTRTPEVIE-EECVGCNLCAHVCPVEGCITMGEVK 401 (420)
T ss_pred eEEEECHHHCCCCCcccccCCCcchhheeeccC-CCceEEech-hhCcccchHHhhCCCCCCEEEeccC
Confidence 3455788999999999999995 3444332 22 222222 112234568899999 999887653
No 106
>PRK06991 ferredoxin; Provisional
Probab=93.38 E-value=0.046 Score=52.54 Aligned_cols=59 Identities=24% Similarity=0.456 Sum_probs=38.2
Q ss_pred cccccccccccCCCCccCCCCc-ccccccccCceEEecCCCCHHHHHHHHHcCCccccccccc
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~-vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~ 215 (343)
..+.+|+..|++|+.|..+||. .+.+... +. .++.. ..-......+..||++||.+...
T Consensus 78 ~~~~id~~~CigCg~Cv~aCP~~AI~~~~~-~~-~~v~~-~~CigCg~Cv~vCP~~AI~~~~~ 137 (270)
T PRK06991 78 AVAVIDEQLCIGCTLCMQACPVDAIVGAPK-QM-HTVLA-DLCTGCDLCVPPCPVDCIDMVPV 137 (270)
T ss_pred ceeEEccccCCCCcHHHHhCCHhheecccc-cc-eeeCH-hhCCCchHHHhhCCcCCeEeecC
Confidence 3456788999999999999983 2333322 22 22221 11223457899999999987644
No 107
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=93.34 E-value=0.026 Score=43.27 Aligned_cols=57 Identities=28% Similarity=0.419 Sum_probs=37.2
Q ss_pred cccccccccCCCCccCCCCcc-cccccccCceEEecCCCCHHHHHHHHHcCCccccccccc
Q 019284 156 VFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~v-F~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~ 215 (343)
..++...|++|+.|..++|.. +.++++ +.. .+.. ..-......++.||++||.+..+
T Consensus 20 ~~i~~~~C~~C~~C~~~Cp~~ai~~~~~-~~~-~i~~-~~C~~C~~C~~~CP~~Ai~~~~~ 77 (78)
T TIGR02179 20 PVVDKEKCIKCKNCWLYCPEGAIQEDEG-GFV-GIDY-DYCKGCGICANVCPVKAIEMVRE 77 (78)
T ss_pred EEEcCCcCcChhHHHhhcCccceEecCC-CcE-EecC-ccCcCccchhhhCCccccEeccC
Confidence 356788899999999999954 333322 322 2222 11223456889999999987654
No 108
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=93.08 E-value=0.011 Score=48.27 Aligned_cols=60 Identities=27% Similarity=0.488 Sum_probs=34.4
Q ss_pred CcccccccccccCCCCccCCCCcc-cccccccCceEEecCCCCHH-----HHHHHHHcCCcccccccc
Q 019284 153 KDHVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINE-----FVQQAIESCPVDCIHRTS 214 (343)
Q Consensus 153 ~~~vfVDe~~CigCg~C~~vaP~v-F~~edd~G~a~V~~q~g~~e-----~~~eAv~~CPv~AI~~~~ 214 (343)
...|.+|+..|+||+.|...+|-. ..++.+.+.+..- +.-.+ ..-..+..||++||.+.+
T Consensus 32 ~G~V~id~~~CigC~~C~~aCP~~ai~~~~~~~~~~KC--dlC~~r~~~G~~PaCv~~Cp~~Al~~g~ 97 (98)
T PF13247_consen 32 DGIVVIDEDKCIGCGYCVEACPYGAIRFDPDTGKARKC--DLCIDRIEEGEEPACVEACPTGALTFGD 97 (98)
T ss_dssp TS-EEE-TTTCCTHHHHHHH-TTS-EEEETTTTCEEE----TTHHHHTTT-S-HHHHH-TTS-EEEEE
T ss_pred CCeEEechhhccCchhhhhhhccCcceeecccccCCcC--ceehhhhhcCCCChhHHhccccceEEec
Confidence 356788999999999999999943 3444443433222 11122 224678999999998765
No 109
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=92.77 E-value=0.044 Score=49.23 Aligned_cols=66 Identities=27% Similarity=0.549 Sum_probs=42.1
Q ss_pred cccccccccccCCCCccCCCCcc-ccccccc--CceE-EecCCCCHHHHHHHHHcCCccccccccchhhhh
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPEV-FKIEEDF--GRAR-VYNQCGINEFVQQAIESCPVDCIHRTSAQQLSL 220 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~v-F~~edd~--G~a~-V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l~~ 220 (343)
..+.+|...|++|+.|+.+||.. +.++.+. |... .+. .+.-..-...++.||++||.+...-++..
T Consensus 31 g~p~~d~~~C~~C~~Cv~~CP~~ai~~~~~~~~~~~~~~i~-~~~C~~Cg~C~~vCP~~AI~~~~~~~~~~ 100 (180)
T PRK12387 31 GKPEYNPQQCIGCAACVNACPSNALTVETDLATGELAWEFN-LGRCIFCGRCEEVCPTAAIKLSQEFELAV 100 (180)
T ss_pred CceEEChhhCcChhHHHHhcCccCeEeeccccCCcccceec-cccCcCccchhhhcCcCceEccCccchhh
Confidence 45677899999999999999853 4444321 1111 121 12222345688999999999876554443
No 110
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=92.77 E-value=0.024 Score=47.35 Aligned_cols=57 Identities=32% Similarity=0.556 Sum_probs=35.8
Q ss_pred ccccCCCCccCCCC-ccccccccc---Cc----eEEecCCCCHHHHHHHHHcCCccccccccchhh
Q 019284 161 FSCIGCKNCNNVAP-EVFKIEEDF---GR----ARVYNQCGINEFVQQAIESCPVDCIHRTSAQQL 218 (343)
Q Consensus 161 ~~CigCg~C~~vaP-~vF~~edd~---G~----a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l 218 (343)
..|++|+.|..+|| ..+.+.... +. ..++. ...-.....+++.||++||.+...-++
T Consensus 43 ~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~-~~~C~~Cg~Cv~~CP~~al~~~~~~~~ 107 (122)
T TIGR01971 43 EKCIGCTLCAAVCPADAIRVVPAEGEDGKRRLKFYQIN-FGRCIFCGLCEEACPTDAIVLTPEFEL 107 (122)
T ss_pred CcCcCcchhhhhcCHhHeeeeeeccCCCceecccceEC-cccCCCCCchhhhCCCccccccceeee
Confidence 88999999999999 445443210 11 11111 111223457889999999998766543
No 111
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=91.84 E-value=0.046 Score=32.71 Aligned_cols=19 Identities=37% Similarity=0.933 Sum_probs=16.4
Q ss_pred cccccccccCCCCccCCCC
Q 019284 156 VFVDEFSCIGCKNCNNVAP 174 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP 174 (343)
+++|...|+||+.|...+|
T Consensus 3 ~~iD~~rCiGC~~C~~AC~ 21 (22)
T PF12797_consen 3 MVIDLERCIGCGACEVACP 21 (22)
T ss_pred eEEccccccCchhHHHhhC
Confidence 5789999999999987765
No 112
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=91.80 E-value=0.09 Score=46.45 Aligned_cols=54 Identities=35% Similarity=0.567 Sum_probs=33.7
Q ss_pred cccCCCCccCCCCcc-ccccccc---Cce----EEecCCCCHHHHHHHHHcCCccccccccch
Q 019284 162 SCIGCKNCNNVAPEV-FKIEEDF---GRA----RVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (343)
Q Consensus 162 ~CigCg~C~~vaP~v-F~~edd~---G~a----~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~ 216 (343)
.|++|+.|..+||.. +.+.... |.. ..+. ...-.....++..||++||.+....
T Consensus 59 ~Ci~C~~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~-~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 120 (164)
T PRK05888 59 RCIACKLCAAICPADAITIEAAEREDGRRRTTRYDIN-FGRCIFCGFCEEACPTDAIVETPDF 120 (164)
T ss_pred cCCcccChHHHcCccccccccccCCCCcccceeeecC-CCcCcccCcchhhcCcCcceecCcc
Confidence 899999999999954 3332210 211 1111 1222234568899999999987664
No 113
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=91.68 E-value=0.12 Score=49.04 Aligned_cols=54 Identities=26% Similarity=0.490 Sum_probs=34.9
Q ss_pred ccccccCCCCccCCCCcc--cccccccCceEEecCCCCHHHHHHHHHcCCccccccc
Q 019284 159 DEFSCIGCKNCNNVAPEV--FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (343)
Q Consensus 159 De~~CigCg~C~~vaP~v--F~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~ 213 (343)
|+..|++|+.|..+||.. .......+....+. .++-....+.++.||++||.+.
T Consensus 199 ~~~~C~~C~~C~~vCP~~~vl~~~~~~~~~~~i~-~~~C~~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 199 DREKCTNCMDCFNVCPEPQVLRMPLKKGGSTLVL-SGDCTLCGRCIDVCHEDVLGFT 254 (255)
T ss_pred ccccCeEcCCccCcCCCCceeeccccCCCceEec-cccccchhHHHHhCCccccccc
Confidence 488999999999999954 22211101122222 2334456789999999999864
No 114
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=91.58 E-value=0.033 Score=33.93 Aligned_cols=20 Identities=50% Similarity=1.095 Sum_probs=17.6
Q ss_pred cccccccccCCCCccCCCCc
Q 019284 156 VFVDEFSCIGCKNCNNVAPE 175 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~ 175 (343)
+.+|+..|++||.|..++|.
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~ 21 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPE 21 (24)
T ss_pred cEEChhhCcChhHHHHhcch
Confidence 45789999999999999984
No 115
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=91.50 E-value=0.032 Score=54.06 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=45.0
Q ss_pred ccccccccccCCCCccCCCCcc-----cccccccCceEEecCCCCH----HHHHHHHHcCCccccccccchhhhhHHHHH
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQCGIN----EFVQQAIESCPVDCIHRTSAQQLSLLEDEM 225 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~v-----F~~edd~G~a~V~~q~g~~----e~~~eAv~~CPv~AI~~~~~~~l~~le~~~ 225 (343)
.+.+|..+||-|+.|+.+|.++ +.+...-....|....+.. ....+.++.|||+||...+.++-+++...+
T Consensus 206 ~i~~D~nKCIlCgRCVRaC~EVqg~~aL~~~~RG~~t~I~t~~d~~~~~~~~~g~cvdvCPvGAL~~~d~~~~~~~~~~~ 285 (297)
T PTZ00305 206 QTRVVLNRCIHCTRCVRFLNEHAQDFNLGMIGRGGLSEISTFLDELEVKTDNNMPVSQLCPVGKLYLGDADENNAIAREL 285 (297)
T ss_pred ceeecCCcCcCccHHHHHHHHhhCCcEEEEeecCCCCEEeecCCCcccccCCCCceeeECCCcccccCCcccchHHHHHh
Confidence 4557889999999999988654 3333331223333322211 122457899999999988887666555443
No 116
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=91.49 E-value=0.1 Score=52.95 Aligned_cols=54 Identities=19% Similarity=0.441 Sum_probs=37.2
Q ss_pred ccccccccccCCCCccCCCCccc-ccccccCceEEecCCCCHHHHHHHHHcCCcccccc
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEVF-KIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~vF-~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~ 212 (343)
.+.+|...|++|+.|...||... ..++ . ..++.. ........++..||++||..
T Consensus 4 ~~~id~~~Ci~C~~C~~~CP~~ai~~~~--~-~~~i~~-~~C~~C~~C~~~CP~~AI~~ 58 (411)
T TIGR03224 4 QHLIDPEICIRCNTCEETCPIDAITHDD--R-NYVVKA-DVCNGCMACVSPCPTGAIDN 58 (411)
T ss_pred eeeeCcccCcCccchhhhCCcccEeccC--C-ceEeCc-ccCcCHHHHHhhcCccccee
Confidence 45678889999999999999543 2322 2 223332 22335678999999999984
No 117
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=91.48 E-value=0.075 Score=42.74 Aligned_cols=57 Identities=33% Similarity=0.545 Sum_probs=37.8
Q ss_pred ccccccccccCCCCccCCCCcc-cccccccCceE-E-ecC-CCCHHHHHHHHHcCCccccccccch
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRAR-V-YNQ-CGINEFVQQAIESCPVDCIHRTSAQ 216 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~v-F~~edd~G~a~-V-~~q-~g~~e~~~eAv~~CPv~AI~~~~~~ 216 (343)
...+|...|+.|..|+..||+. +.+.++ +.-. | ++- .| ---.++-||+.||.++.+.
T Consensus 29 rPv~d~~kCi~C~~C~~yCPe~~i~~~~~-~~~~~idYdyCKG----CGICa~vCP~kaI~Mv~E~ 89 (91)
T COG1144 29 RPVVDEDKCINCKLCWLYCPEPAILEEEG-GYKVRIDYDYCKG----CGICANVCPVKAIEMVREE 89 (91)
T ss_pred eeEEcccccccCceeEEECCchheeeccC-CccceeEcccccC----ceechhhCChhheEeEeec
Confidence 4457999999999999999987 444443 3221 1 211 12 1235678999999988654
No 118
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=91.40 E-value=0.099 Score=47.63 Aligned_cols=60 Identities=25% Similarity=0.540 Sum_probs=39.7
Q ss_pred cccccccccccCCCCccCCCCc-ccccccccCceEEecCCCCHHHHHHHHHcCCccccccccch
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~-vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~ 216 (343)
...++|...|++|+.|...||. .+...++ +...+.. ..-..--..+..||++||.+....
T Consensus 107 ~~~~id~~~Ci~Cg~Cv~aCp~~ai~~~~~-~~~~v~~--~~C~~Cg~Cv~vCP~~AI~~~~~~ 167 (191)
T PRK05113 107 KVAFIDEDNCIGCTKCIQACPVDAIVGATK-AMHTVIS--DLCTGCDLCVAPCPTDCIEMIPVA 167 (191)
T ss_pred ceeEEeCCcCCCCChhhhhCCHhhhecccC-CceeecC--CcCCchHHHHHHcCcCceEEeecc
Confidence 3566799999999999999983 2333222 3222221 122245678999999999987653
No 119
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=91.31 E-value=0.13 Score=49.26 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=36.3
Q ss_pred cccccccCCCCccCCCCcccccc----cccCceEEecCCCCHHHHHHHHHcCCccccccccc
Q 019284 158 VDEFSCIGCKNCNNVAPEVFKIE----EDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (343)
Q Consensus 158 VDe~~CigCg~C~~vaP~vF~~e----dd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~ 215 (343)
+|...|++|+.|...||..-.+. ++... ..+. .++-....+.++.||++||+...+
T Consensus 205 ~d~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~-~~i~-~~~C~~Cg~Cv~~CP~~Ai~~~~r 264 (271)
T PRK09477 205 HDRQKCTRCMDCFHVCPEPQVLRPPLKGKQSP-SQVT-SGDCITCGRCIDVCSEDVFNFTIR 264 (271)
T ss_pred CCcccCcccCCcCCcCCCcceecccccCCCcc-ceeC-cccCcChhHHHhhcCccceeeccc
Confidence 78889999999999999642221 11011 0121 223335678999999999997643
No 120
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=91.30 E-value=0.13 Score=45.69 Aligned_cols=66 Identities=24% Similarity=0.529 Sum_probs=39.9
Q ss_pred cccccccccccCCCCccCCCCccc-cccccc----CceE---EecCCCCHHHHHHHHHcCCccccccccchhhh
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPEVF-KIEEDF----GRAR---VYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~vF-~~edd~----G~a~---V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l~ 219 (343)
..+.++...|++|+.|..+||... .++.++ +... +.-..+.-.....+++.||++||.+....++.
T Consensus 52 g~i~~~~~~Ci~Cg~C~~aCP~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~C~~~CP~~AI~~~~~~~~~ 125 (167)
T CHL00014 52 GRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELS 125 (167)
T ss_pred CeEEeccccCCCcCcHHHhCCCCCccccccccccccccccccccCCCCcCcCccchHhhcCcCceecCCccccc
Confidence 345567888999999999999642 111110 0010 00011223345679999999999987665443
No 121
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=90.97 E-value=0.049 Score=44.85 Aligned_cols=56 Identities=20% Similarity=0.407 Sum_probs=37.8
Q ss_pred ccccccccCCCCccCCCCcc-cccccccCceEEecCCCCHHHHHHHHHcCCccccccccc
Q 019284 157 FVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~v-F~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~ 215 (343)
.+|...|++|+.|..++|.. +.++++ +. .++.. ..-......++.||.+||.+...
T Consensus 47 ~~d~~~Ci~C~~C~~~CP~~ai~~~~~-~~-~~id~-~~C~~Cg~Cv~~CP~~AI~~~~~ 103 (105)
T PRK09624 47 EFNRDKCVRCYLCYIYCPEPAIYLDEE-GY-PVFDY-DYCKGCGICANECPTKAIEMVRE 103 (105)
T ss_pred EEChhHCcChhhHHhhCCHhhEEecCC-Cc-EEECc-hhCCCcCchhhhcCcCcEEEecc
Confidence 46888999999999999954 445442 32 23332 11123456889999999987654
No 122
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=90.81 E-value=0.19 Score=47.73 Aligned_cols=88 Identities=17% Similarity=0.269 Sum_probs=56.6
Q ss_pred ccccCCCCccCCCCc-ccccccccCceEEecCCCCHHHHHHHHHcCCccccccccchhhhhHHHHHHHHHhhccceeccC
Q 019284 161 FSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSG 239 (343)
Q Consensus 161 ~~CigCg~C~~vaP~-vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l~~le~~~~~~~~~~v~~~~~g 239 (343)
..|.+|+.|...||. +|.+++ +...+.... ......+.+..||.+||.+....+- -++...+-
T Consensus 169 ~~C~~C~~C~~~CP~~vi~~d~--~~~~v~~~~-~C~~C~~C~~~Cp~~AI~~~~~~~~-------------~if~vEs~ 232 (259)
T cd07030 169 EDCDGCGKCVEECPRGVLELEE--GKVVVEDLE-DCSLCKLCERACDAGAIRVGWDEDR-------------FIFEVESD 232 (259)
T ss_pred hhCCChHHHHHhCCccceEccC--CeeEEeChh-hCcCchHHHHhCCCCcEEEEecCCE-------------EEEEEeCC
Confidence 679999999999985 466654 433333321 2223456788999999998755410 12222244
Q ss_pred CCCCCcchHHHHHHHHHhhHHHHHH
Q 019284 240 MGSGSADVFRMASSRWERRQAKVLE 264 (343)
Q Consensus 240 ~G~~~~~~f~~a~~~~~~~~~~~~~ 264 (343)
|-.+..+.|-.|...++++-.++.+
T Consensus 233 Gsl~p~~il~~A~~~l~~k~~~~~~ 257 (259)
T cd07030 233 GSLPPKEILLEALRILKEKADELIE 257 (259)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4457788998888777777655544
No 123
>PRK09898 hypothetical protein; Provisional
Probab=90.78 E-value=0.16 Score=46.63 Aligned_cols=59 Identities=17% Similarity=0.478 Sum_probs=40.0
Q ss_pred ccccccccccCCCCccCCCCccc-ccccccCceEEecCCCCHHHHHHHHHcCCccccccccchhhh
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEVF-KIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~vF-~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l~ 219 (343)
.+.+|...|++|+.|...||..- .++...+ ....-..-...++.||++||.+.+.++++
T Consensus 148 ~v~vd~~~CigC~~C~~aCP~~ai~~~~~~~------~~~kC~~Cg~Cv~~CP~~Ai~~~~~~~~~ 207 (208)
T PRK09898 148 CITVDHKRCIGCSACTTACPWMMATVNTESK------KSSKCVLCGECANACPTGALKIIEWKDIT 207 (208)
T ss_pred eEEeccccCCCcCcccccCCCCCCEecCCCC------cCCcCcChHHHHHhCCcccEEEecHHHcc
Confidence 45678889999999999999542 2332111 11122344589999999999998876543
No 124
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=90.66 E-value=0.14 Score=44.90 Aligned_cols=62 Identities=24% Similarity=0.495 Sum_probs=38.5
Q ss_pred ccccccccccCCCCccCCCCc-ccccccccCceEEecCCCCHHHHH-----HHHHcCCccccccccchhh
Q 019284 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRTSAQQL 218 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~-vF~~edd~G~a~V~~q~g~~e~~~-----eAv~~CPv~AI~~~~~~~l 218 (343)
.+.+|...|++|+.|...+|. .+.++.+.+. +..=.+-.+.+. ..+..||++||.+.+.+++
T Consensus 89 ~~~i~~~~C~~C~~C~~aCP~~ai~~~~~~~~--~~kC~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~~~~~~ 156 (161)
T TIGR02951 89 LVLVDQDKCIGCRYCVWACPYGAPQYDPQQGV--MGKCDGCYDRVEKGLRPACVDACPMRALDFGPIDEL 156 (161)
T ss_pred cEEECHHhCCCchHHHhhCCCCCcEEcCCCCc--cccCCCCHHHHHCCCCCcchhhccccceEEecHHHH
Confidence 355677889999999999985 3444432121 111122222222 5889999999998876643
No 125
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=90.48 E-value=0.17 Score=49.99 Aligned_cols=64 Identities=22% Similarity=0.409 Sum_probs=38.0
Q ss_pred cccccccccccCCCCccCCCCccc-ccccccCceEEecC---CCC--HHHH-----HHHHHcCCccccccccchhh
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPEVF-KIEEDFGRARVYNQ---CGI--NEFV-----QQAIESCPVDCIHRTSAQQL 218 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~vF-~~edd~G~a~V~~q---~g~--~e~~-----~eAv~~CPv~AI~~~~~~~l 218 (343)
..+.+|...|++|+.|...||... .++.+..... +.. -.+ .+.+ =..+..||++||...+.++|
T Consensus 136 g~V~id~dkCigCg~Cv~aCP~gai~~~~~~~~~~-~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG~~~el 210 (328)
T PRK10882 136 GIVHYDKDVCTGCRYCMVACPFNVPKYDYNNPFGA-IHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTREEL 210 (328)
T ss_pred CcccCCHHHcCcccHHHHhCCccceeccccccccc-eeecccccccchhhhhcCCCChhhhhccccceEeccHHHH
Confidence 345678899999999999999442 2221101111 111 111 0112 13889999999998776644
No 126
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=90.33 E-value=0.13 Score=49.96 Aligned_cols=61 Identities=25% Similarity=0.426 Sum_probs=37.0
Q ss_pred ccccccccccCCCCccCCCCcccccc---ccc---C---ceEEec-CCCCHHHHHHHHHcCCccccccccc
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEVFKIE---EDF---G---RARVYN-QCGINEFVQQAIESCPVDCIHRTSA 215 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~vF~~e---dd~---G---~a~V~~-q~g~~e~~~eAv~~CPv~AI~~~~~ 215 (343)
...+|...|++|+.|...||...... ... + ...++. ..........+++.||++||.++.+
T Consensus 241 ~p~id~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~~e 311 (312)
T PRK14028 241 KPVIDHSKCIMCRKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMVRE 311 (312)
T ss_pred ceEECcccCcCcccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEeccc
Confidence 44568899999999999999653111 000 1 111111 1111223557899999999998653
No 127
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=90.21 E-value=0.16 Score=45.08 Aligned_cols=57 Identities=25% Similarity=0.454 Sum_probs=37.6
Q ss_pred cccccccccccCCCCccCCCCcc-cccccccCceEEecCCCCHHHHHHHHHcCCccccccc
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~v-F~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~ 213 (343)
....+|...|++|+.|...||.. +.++.+ +. .++.. ..-..-...++.||++||.++
T Consensus 106 ~~~~id~~~Ci~Cg~C~~aCp~~ai~~~~~-~~-~~i~~-~~C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 106 MVALIDEDNCIGCTKCIQACPVDAIVGAAK-AM-HTVIA-DECTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred ceEEEECCcCCChhHHHHhCCccceEecCC-Cc-eEeec-ccccChhHHHHhcCcCceEee
Confidence 34668999999999999999843 223222 22 22222 112235679999999999875
No 128
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=89.71 E-value=0.09 Score=42.81 Aligned_cols=58 Identities=17% Similarity=0.427 Sum_probs=36.4
Q ss_pred cccccccCCCCccCCCCcc-cccccccCceEEecCCCCHHHHHHHHHcCCccccccccch
Q 019284 158 VDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (343)
Q Consensus 158 VDe~~CigCg~C~~vaP~v-F~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~ 216 (343)
++...|++|+.|...+|.. +.++.. |...+....+.-..-...+..||++||.-....
T Consensus 31 ~~~~~C~~C~~C~~~CP~~~i~~~~~-g~~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~~~~ 89 (101)
T TIGR00402 31 LFSAVCTRCGECASACENNILQLGQQ-GQPTVEFDNAECDFCGKCAEACPTNAFHPRFPG 89 (101)
T ss_pred cCcCcCcChhHHHHHcCcccceeccC-CceeeEecCccCcCccChhhHCCccccCcCCCC
Confidence 4556899999999999964 444432 332222222222234578899999999865443
No 129
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=89.49 E-value=0.21 Score=46.53 Aligned_cols=60 Identities=20% Similarity=0.354 Sum_probs=36.2
Q ss_pred ccccccccccCCCCccCCCCcccc-cccccCceEEecC-CCCHH-HH-----HHHHHcCCccccccccchh
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEVFK-IEEDFGRARVYNQ-CGINE-FV-----QQAIESCPVDCIHRTSAQQ 217 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~vF~-~edd~G~a~V~~q-~g~~e-~~-----~eAv~~CPv~AI~~~~~~~ 217 (343)
.+.+|...|++|+.|...||.... ++...+. ... .+-.+ .+ =..++.||++||.+.+.++
T Consensus 119 ~v~id~~~C~~C~~C~~aCP~~A~~~~~~~~~---~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~~~ 186 (225)
T TIGR03149 119 IVDVHKDLCVGCQYCIAACPYRVRFIHPVTKS---ADKCNFCRDTNLAEGKLPACVESCPTKALTFGDLND 186 (225)
T ss_pred eEEechhhCCcchHHHHhCCCCCcEecCCCCc---cccCCCCCcchhhCCCCCcccccCccCCEEEecccc
Confidence 455788889999999999985432 2221011 111 11111 11 1688999999999887654
No 130
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=89.37 E-value=0.067 Score=49.86 Aligned_cols=61 Identities=25% Similarity=0.535 Sum_probs=38.2
Q ss_pred cccccccccccCCCCccCCCCcccccccccCceEEecC--CC---------CHHH---HH--HHHHcCCcccccccc
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ--CG---------INEF---VQ--QAIESCPVDCIHRTS 214 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~vF~~edd~G~a~V~~q--~g---------~~e~---~~--eAv~~CPv~AI~~~~ 214 (343)
..+++|...|+||+.|...||..+.+........|+.. .+ .... -. ..+..||++||....
T Consensus 39 ~~~~iD~~rCigC~~C~~aC~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~C~~C~~~~Cv~~CP~gAi~~~~ 115 (225)
T TIGR03149 39 YGMVHDETACIGCTACMDACREVNKVPEGVSRLEIIRSEPYGEFPDVEYRFFRKSCQHCDNAPCVAVCPTGASFKDE 115 (225)
T ss_pred EEEEEEHHHCcCcHHHHHHhhHHhCCCCCCceEEEEEecccCCCCCceeEECchhccCCcCcChHhhCCCCcEEEeC
Confidence 35778999999999999999986655432122222211 01 0111 11 378999999998753
No 131
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.36 E-value=0.19 Score=53.79 Aligned_cols=65 Identities=25% Similarity=0.483 Sum_probs=39.9
Q ss_pred ccccccccccCCCCccCCCCcc-cccccccC---ceEEecCCCCHHHH------HHHHHcCCccccccccchhhhhH
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFG---RARVYNQCGINEFV------QQAIESCPVDCIHRTSAQQLSLL 221 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~v-F~~edd~G---~a~V~~q~g~~e~~------~eAv~~CPv~AI~~~~~~~l~~l 221 (343)
.+.+|...|++|+.|...||.. +.+..... ...+... .-+.. -..+..||++||.+.+.+++...
T Consensus 79 ~~~id~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~--~C~~C~~~~~~p~Cv~~CP~~Ai~~~~~~~~~~~ 153 (654)
T PRK12769 79 SIQVNQQKCIGCKSCVVACPFGTMQIVLTPVAAGKVKATAH--KCDLCAGRENGPACVENCPADALQLVTEQALSGM 153 (654)
T ss_pred eEEEecccccCcChhcccCCccCeeecccCCcccceeeecC--cCcCCCCCCCCCceeccCCcCcEEEecHHHHHHH
Confidence 3567889999999999999943 33332101 0011111 11111 15789999999999987755433
No 132
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=89.30 E-value=0.15 Score=48.23 Aligned_cols=60 Identities=20% Similarity=0.307 Sum_probs=35.8
Q ss_pred ccccccccccCCCCccCCCCc-ccccccccCceEEecC-CCCHHHHH-----HHHHcCCccccccccchh
Q 019284 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQ-CGINEFVQ-----QAIESCPVDCIHRTSAQQ 217 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~-vF~~edd~G~a~V~~q-~g~~e~~~-----eAv~~CPv~AI~~~~~~~ 217 (343)
.+.+|...|++|+.|...||. ...++++.+ .... ..-.+.+. ..+..||++||.+.+.++
T Consensus 124 ~v~id~~~CigC~~Cv~aCP~~Ai~~~~~~~---~~~KC~~C~~r~~~G~~PaCv~~CP~~Al~~g~~~~ 190 (244)
T PRK14993 124 IVVVDNKRCVGCAYCVQACPYDARFINHETQ---TADKCTFCVHRLEAGLLPACVESCVGGARIIGDIKD 190 (244)
T ss_pred CEEEcHHHCCCHHHHHHhcCCCCCEEeCCCC---CcccCcCCcchhhCCCCcccchhcccCCEEEccccc
Confidence 456788889999999888884 334443211 1111 11111111 577889999988776654
No 133
>PRK08764 ferredoxin; Provisional
Probab=89.18 E-value=0.22 Score=42.77 Aligned_cols=53 Identities=26% Similarity=0.536 Sum_probs=32.8
Q ss_pred ccccccccCCCCccCCCCcc-cccccccCceEEecCCCCHHHHHHHHHcCCcccccc
Q 019284 157 FVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~v-F~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~ 212 (343)
++++..|++|+.|...+|.. +..+++ +...+. . ..-..-...+..||++||.+
T Consensus 81 ~~~~~~Ci~C~~Cv~aCp~~ai~~~~~-~~~~v~-~-~~C~~Cg~Cv~~CP~~Ai~~ 134 (135)
T PRK08764 81 WIVEADCIGCTKCIQACPVDAIVGGAK-HMHTVI-A-PLCTGCELCVPACPVDCIEL 134 (135)
T ss_pred EECcccCcCcchHHHhCChhhcCccCC-Cceeec-C-CcCcCccchhhhcCccceEe
Confidence 34567899999999999832 222222 222222 1 11223457899999999975
No 134
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=89.15 E-value=0.24 Score=54.03 Aligned_cols=61 Identities=16% Similarity=0.346 Sum_probs=39.9
Q ss_pred cccccccccccCCCCccCCCCcc-----cccccccCceEEecCC---CCHHHHHHHHHcCCcccccccc
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQC---GINEFVQQAIESCPVDCIHRTS 214 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~v-----F~~edd~G~a~V~~q~---g~~e~~~eAv~~CPv~AI~~~~ 214 (343)
..+..|...||.|+.|+.+|-++ +.+.++-...+|.... -+.+..-++++.|||+||.-..
T Consensus 137 p~i~~d~~rCi~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CP~GAl~~k~ 205 (776)
T PRK09129 137 PLISTEMTRCIHCTRCVRFGQEIAGVMELGMMGRGEHSEITTYVGKTVDSELSGNMIDLCPVGALTSKP 205 (776)
T ss_pred cceeecccccccCcHHHHHHHHhcCCceeeeeccCCCCEEcCCCCCCccCcccCCchhhCCcccccccc
Confidence 45667899999999999988654 3333332233343321 1234566889999999998543
No 135
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=89.06 E-value=0.21 Score=53.98 Aligned_cols=113 Identities=19% Similarity=0.278 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhcCCC------CCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhcccccccCCCCCCCCCCcccc
Q 019284 84 PEQIKKAYYNCMKACHPD------LSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVF 157 (343)
Q Consensus 84 ~~eIK~AYr~la~~~HPD------k~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~~~~~~~~~~~~~~~~~~~vf 157 (343)
.+++++---.+.+..||= .+.++ =.|+++-..|+=..+|--|+.-. ++...-.......
T Consensus 81 vk~~r~~~md~~l~nH~LyC~vCd~nnGd-------Celh~~~~~~gl~~q~y~y~~k~--------~~~~~Des~Pfy~ 145 (978)
T COG3383 81 VKEARREAMDRILSNHPLYCTVCDNNNGD-------CELHNMVMALGLTEQRYPYEEKN--------PPYPKDESNPFYI 145 (978)
T ss_pred HHHHHHHHHHHHHhcCCcCccccCCCCCC-------chHHHHHHHhCCCccccCccccC--------CCCCcccCCCeEE
Confidence 345566566677888884 33221 12344444454444554454421 1111111112234
Q ss_pred cccccccCCCCccCCCCcc---c--ccccccCceEEecCCCC------HHHHHHHHHcCCccccc
Q 019284 158 VDEFSCIGCKNCNNVAPEV---F--KIEEDFGRARVYNQCGI------NEFVQQAIESCPVDCIH 211 (343)
Q Consensus 158 VDe~~CigCg~C~~vaP~v---F--~~edd~G~a~V~~q~g~------~e~~~eAv~~CPv~AI~ 211 (343)
.|...||-||.|+..|.++ | .++.+--..+|+-..+. ....-.+++.||++|+-
T Consensus 146 ydp~qCIlCgRCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALm 210 (978)
T COG3383 146 YDPNQCILCGRCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNALM 210 (978)
T ss_pred ecchheeehhHHHHHHHhhhceeEEEeecccCCcceecCCCCccccccccccCccceecchhhhh
Confidence 5888999999999999754 3 33333234556554331 12345788999999965
No 136
>PRK10194 ferredoxin-type protein; Provisional
Probab=88.35 E-value=0.14 Score=45.12 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=34.8
Q ss_pred ccccccCCCCccCCCCcccccccccCceEE-ecCCCCHHHHHHHHHcCCcccccccc
Q 019284 159 DEFSCIGCKNCNNVAPEVFKIEEDFGRARV-YNQCGINEFVQQAIESCPVDCIHRTS 214 (343)
Q Consensus 159 De~~CigCg~C~~vaP~vF~~edd~G~a~V-~~q~g~~e~~~eAv~~CPv~AI~~~~ 214 (343)
+...|++||.|...+|......++.|...+ +.. +.-..-...++.||++||....
T Consensus 32 ~~~~C~~Cg~C~~aCp~~~i~~~~~~~~~~~~~~-~~C~~C~~C~~~CP~~ai~~~~ 87 (163)
T PRK10194 32 FLTHCTRCDACINACENNILQRGAGGYPSVNFKN-NECSFCYACAQACPESLFSPRH 87 (163)
T ss_pred HhhhCcChhHHHHHcChhhcccCCCCceeeeecC-CCCCCchhhHhhCcchheeccc
Confidence 456799999999999976532222232222 222 2222346789999999988654
No 137
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=88.32 E-value=0.26 Score=44.14 Aligned_cols=70 Identities=26% Similarity=0.421 Sum_probs=41.6
Q ss_pred ccccccccccCCCCccCCCCccc-cccccc-----Cc-------eEEecC---CCCHHHHHHHHHcCCccccccccchhh
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEVF-KIEEDF-----GR-------ARVYNQ---CGINEFVQQAIESCPVDCIHRTSAQQL 218 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~vF-~~edd~-----G~-------a~V~~q---~g~~e~~~eAv~~CPv~AI~~~~~~~l 218 (343)
.+.+|...|++|+.|...+|..- .+.... |. ...... -+..+..=..+..||++||.+++..++
T Consensus 81 ~v~i~~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~~~~~ 160 (181)
T PRK10330 81 FVHVMQERCIGCKTCVVACPYGAMEVVVRPVIRNSGAGLNVRAEKAEANKCDLCNHREDGPACMAACPTHALICVDRNKL 160 (181)
T ss_pred eEEeChhhCCCcchhhhhCCccCeEeeccccccccccccccccCCceeeeCcCCCCCCCCccchhhCchhhEEEeCHHHH
Confidence 35678889999999999998442 222110 00 000000 010000015899999999999988876
Q ss_pred hhHHHH
Q 019284 219 SLLEDE 224 (343)
Q Consensus 219 ~~le~~ 224 (343)
..++..
T Consensus 161 ~~~~~~ 166 (181)
T PRK10330 161 EQLSAE 166 (181)
T ss_pred HHHHHH
Confidence 665553
No 138
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=88.21 E-value=0.3 Score=38.32 Aligned_cols=59 Identities=24% Similarity=0.471 Sum_probs=36.2
Q ss_pred ccccccccCCCCccCCCCcc-ccccccc--CceEEecCCCCHHHHHHHHHcCCccccccccch
Q 019284 157 FVDEFSCIGCKNCNNVAPEV-FKIEEDF--GRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~v-F~~edd~--G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~ 216 (343)
.++...|++||.|..++|.. ..+..+. ....++.. ..-..-...+..||++||.+....
T Consensus 25 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~-~~C~~C~~C~~~Cp~~a~~~~~~~ 86 (99)
T COG1145 25 VIDAEKCIGCGLCVKVCPTGAIELIEEGLLLPEVVIDP-DLCVLCGACLKVCPVDALSIAEEL 86 (99)
T ss_pred EeCccccCCCCCchhhCCHHHhhcccccCccceEEEcc-ccCccccchHhhCCcCCeehhhcc
Confidence 56777899999999999976 2222210 01122221 112233467779999998876554
No 139
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=87.95 E-value=0.15 Score=47.75 Aligned_cols=59 Identities=22% Similarity=0.459 Sum_probs=39.2
Q ss_pred cccccccccCCCCccCCCCc-ccccccccCceEEecCCCCHHHHHHHHHcCCccccccccchhh
Q 019284 156 VFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQL 218 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~-vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l 218 (343)
+.+|...|++|+.|...||. .+.+++ +.. .+.. ........++..||++||.....-++
T Consensus 143 ~~id~~~C~~C~~C~~~CP~~ai~~~~--~~~-~i~~-~~C~~Cg~C~~~CP~~AI~~~~~~~~ 202 (234)
T TIGR02700 143 YMIDRKRCKGCGICVDACPRSAIDMVD--GKA-FIRL-LKCVGCGKCKEACPYNAIHGGLEYEM 202 (234)
T ss_pred eEEChhHCcCcchHHHhCCcccEEecC--Cce-EEch-hhCCccchHHhhCCCCceecCCceEE
Confidence 45788899999999999995 344443 333 2221 11223457889999999997754433
No 140
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=87.59 E-value=0.16 Score=35.75 Aligned_cols=20 Identities=45% Similarity=1.075 Sum_probs=8.6
Q ss_pred cccccccccCCCCccCCCCc
Q 019284 156 VFVDEFSCIGCKNCNNVAPE 175 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~ 175 (343)
+.+|...|++|+.|..++|.
T Consensus 2 i~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 2 IVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp ----TT------TTGGG-TT
T ss_pred CccCcccCcCCcChHHHccc
Confidence 56889999999999999998
No 141
>PRK06273 ferredoxin; Provisional
Probab=87.28 E-value=0.17 Score=45.23 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=32.9
Q ss_pred ccccccccCCCCccCCCCcc-cccccccCc-----------eEEecCCCCHHHHHHHHHcCCcccccc
Q 019284 157 FVDEFSCIGCKNCNNVAPEV-FKIEEDFGR-----------ARVYNQCGINEFVQQAIESCPVDCIHR 212 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~v-F~~edd~G~-----------a~V~~q~g~~e~~~eAv~~CPv~AI~~ 212 (343)
.++...|++|+.|..+||.. +.++.. +. ..++.. ..-......++.||++||..
T Consensus 45 ~id~~~CigCg~C~~aCP~~AI~~~~~-ep~~~~~~~~~~~~~~Id~-~kCi~Cg~C~~aCP~~AI~~ 110 (165)
T PRK06273 45 KVFEELCIGCGGCANVCPTKAIEMIPV-EPVKITEGYVKTKIPKIDY-EKCVYCLYCHDFCPVFALFN 110 (165)
T ss_pred eECchhCcChhHHHHhcCccceeeecc-cccchhcccccccceeccc-ccCcCCCCcchhCCHhheec
Confidence 46888899999999999954 333321 10 011111 11112346889999999854
No 142
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=87.21 E-value=0.37 Score=51.04 Aligned_cols=60 Identities=22% Similarity=0.391 Sum_probs=39.9
Q ss_pred ccccccccccCCCCccCCCCcc-----cccccccCceEEecCCC---CHHHHHHHHHcCCcccccccc
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQCG---INEFVQQAIESCPVDCIHRTS 214 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~v-----F~~edd~G~a~V~~q~g---~~e~~~eAv~~CPv~AI~~~~ 214 (343)
.+..|...||.|+.|+.+|-++ +.+.+.-...+|....+ +.+..-+.++.|||+||.-..
T Consensus 136 ~i~~d~~rCI~C~rCvr~c~e~~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~~k~ 203 (603)
T TIGR01973 136 LIKTEMTRCIHCTRCVRFANEVAGVEDLGVIGRGNNVEIGTYEGKTLESELSGNLIDICPVGALTSKP 203 (603)
T ss_pred CeEecCCcCccccHHHHHHHHhhCCceEEEeccCCCCEEecCCCCCCCCcccCChHhhCCcccccccc
Confidence 5667999999999999988543 44444423344433322 223456899999999998543
No 143
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=86.72 E-value=0.44 Score=52.59 Aligned_cols=61 Identities=15% Similarity=0.281 Sum_probs=39.1
Q ss_pred cccccccccccCCCCccCCCCcc-----cccccccCceEEecC---CCCHHHHHHHHHcCCcccccccc
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTS 214 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~v-----F~~edd~G~a~V~~q---~g~~e~~~eAv~~CPv~AI~~~~ 214 (343)
..+..|...||.|+.|+.+|.++ +.+.+..+...+-.. ..+.+..-..++.|||+||.-..
T Consensus 142 ~~i~~d~~rCi~C~rCVr~c~e~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~cv~vCP~GAl~~k~ 210 (847)
T PRK08166 142 PFISHEMNRCIACYRCVRYYKDYAGGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEVCPTGVFTDKT 210 (847)
T ss_pred CceEecCCcCccccHHHHHHHhhcCcceEEEeecCceeEecCCCCCcccChhhCChHhhCCchhccccc
Confidence 34667999999999999988654 333332122222211 12234566899999999998553
No 144
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=85.72 E-value=0.28 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.6
Q ss_pred ccccccccccCCCCccCCCCcc
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEV 176 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~v 176 (343)
.+..|...||.|+.|+.+|+++
T Consensus 135 ~I~~D~~rCI~C~RCVr~C~ev 156 (819)
T PRK08493 135 KINYDPSLCIVCERCVTVCKDK 156 (819)
T ss_pred cEEechhhcccccHHHhhCccc
Confidence 5778999999999999999974
No 145
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=85.62 E-value=0.15 Score=30.78 Aligned_cols=19 Identities=37% Similarity=0.882 Sum_probs=15.3
Q ss_pred ccccccccCCCCccCCCCc
Q 019284 157 FVDEFSCIGCKNCNNVAPE 175 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~ 175 (343)
.+|...|++||.|...+|.
T Consensus 2 ~id~~~C~~Cg~C~~~CP~ 20 (24)
T PF00037_consen 2 VIDPDKCIGCGRCVEACPF 20 (24)
T ss_dssp EEETTTSSS-THHHHHSTT
T ss_pred EEchHHCCCcchhhhhccc
Confidence 4688889999999988885
No 146
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=85.54 E-value=0.34 Score=51.74 Aligned_cols=67 Identities=28% Similarity=0.527 Sum_probs=41.1
Q ss_pred ccccccccccCCCCccCCCCc-ccccccccCceEEecCCCC-HHHHHHHHHcCCccccccccchhhhhHHH
Q 019284 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGI-NEFVQQAIESCPVDCIHRTSAQQLSLLED 223 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~-vF~~edd~G~a~V~~q~g~-~e~~~eAv~~CPv~AI~~~~~~~l~~le~ 223 (343)
.+.+|...|++|+.|...||. .+.+.+ +....-...+. ......++..||++||.+.+..++..+..
T Consensus 79 ~v~~d~~~C~gC~~C~~~CP~~ai~~~~--~~~~kC~~C~~~~~~~~~Cv~~CP~~Ai~~~~~~~~~~~~~ 147 (639)
T PRK12809 79 SVQLDEQKCIGCKRCAIACPFGVVEMVD--TIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDKGLQQIKV 147 (639)
T ss_pred ceecChhhCcchhhHhhhcCCCCEEccC--CCcccccCCcccCCCCChhhhhCccceEEEechHHHHHHHH
Confidence 356788899999999999994 334433 11100000110 01123688999999999988765555443
No 147
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=83.42 E-value=0.26 Score=54.15 Aligned_cols=59 Identities=20% Similarity=0.462 Sum_probs=37.7
Q ss_pred ccccccccccCCCCccCCCCcc-----cccccccCceEEecCCC---CHHHHHHHHHcCCccccccc
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQCG---INEFVQQAIESCPVDCIHRT 213 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~v-----F~~edd~G~a~V~~q~g---~~e~~~eAv~~CPv~AI~~~ 213 (343)
.+..|...||-|+.|+.+|-++ +.+.+.-....|....+ +.+..-+.++.|||+||.-.
T Consensus 144 ~i~~d~~rCI~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cG~cv~vCP~GAl~~k 210 (797)
T PRK07860 144 QVLLDRERCVLCARCTRFSDQIAGDPFIDLQERGALQQVGIYEGEPFQSYFSGNTVQICPVGALTGA 210 (797)
T ss_pred ceeecccccccCcHHHHHHHhhcCCcEEEeeecCCCCEEecCCCCCcCccccCCchhhCCccccccc
Confidence 4667999999999999988654 33333312233332211 12344578999999999743
No 148
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=83.29 E-value=0.82 Score=48.50 Aligned_cols=51 Identities=31% Similarity=0.559 Sum_probs=35.2
Q ss_pred cccccccccccCCCCccC--CCCcccccccccCceEEecCCCCHHHHHHHHHcCCcccc
Q 019284 154 DHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCI 210 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~--vaP~vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI 210 (343)
..+.+|...|++|+.|.. .||. +..++ +.. .+.. .....-.+++.||++||
T Consensus 543 ~~~~id~~~C~~C~~C~~~~~CP~-~~~~~--~~~-~i~~--~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 543 GPYKVDQDKCIGCKKCIKELGCPA-IEPED--KEA-VIDP--LCTGCGVCAQICPFDAI 595 (595)
T ss_pred ceEEEcCCcCCCccccccccCCCC-ccccC--Ccc-eeCC--CCcCHHHHHhhCccccC
Confidence 467789999999999999 9994 33322 332 2332 23345678899999987
No 149
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=83.07 E-value=0.3 Score=52.72 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=38.2
Q ss_pred cccccccccccCCCCccCCCCcc-----cccccccCceEEecC---CCCHHHHHHHHHcCCccccccc
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRT 213 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~v-----F~~edd~G~a~V~~q---~g~~e~~~eAv~~CPv~AI~~~ 213 (343)
..+..|...||.|+.|+.+|-++ +.+.++-....|..- .-+.+..-+.++.|||+||.-.
T Consensus 138 p~i~~~~~rCI~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~~G~cv~~CPvgAl~~k 205 (687)
T PRK09130 138 PLVKTVMTRCIHCTRCVRFATEVAGVPELGAIGRGEDMEITTYLEQALTSELSGNVIDLCPVGALTSK 205 (687)
T ss_pred CcEEEecccCCcccHHHHHHHhhcCCceEEeeecCCCCEEccCCCCCccccccccHHhhCCCcccccc
Confidence 34667889999999999988654 222333122333222 1122456689999999999844
No 150
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=82.68 E-value=0.23 Score=45.03 Aligned_cols=61 Identities=25% Similarity=0.551 Sum_probs=38.3
Q ss_pred CCcccccccccccCCCCccCCCCcccccccccCceEEecC--CCCHHHHHHHHHcCCccccccccch
Q 019284 152 PKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ--CGINEFVQQAIESCPVDCIHRTSAQ 216 (343)
Q Consensus 152 ~~~~vfVDe~~CigCg~C~~vaP~vF~~edd~G~a~V~~q--~g~~e~~~eAv~~CPv~AI~~~~~~ 216 (343)
.....++|+..|+||..|.+.||---.+......-.|+.. .| --..+..|||+||.+....
T Consensus 106 ~~~va~i~e~~ciGCtkCiqaCpvdAivg~~~~mhtv~~dlCTG----C~lCva~CPtdci~m~~~~ 168 (198)
T COG2878 106 ARMVALIDEANCIGCTKCIQACPVDAIVGATKAMHTVIADLCTG----CDLCVAPCPTDCIEMQPVA 168 (198)
T ss_pred cceeeEecchhccccHHHHHhCChhhhhccchhHHHHHHHHhcC----CCcccCCCCCCceeeeecc
Confidence 4556778999999999999999854333221011112211 11 2245789999999986543
No 151
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=82.43 E-value=0.47 Score=46.23 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=36.7
Q ss_pred cccccccccCCCCccCCCCc----ccccccccCceEEecCCCCHHHHHHHHHcCCcccccccc
Q 019284 156 VFVDEFSCIGCKNCNNVAPE----VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~----vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~ 214 (343)
..+|...|++|+.|...||. .+.+++ + ..++.. ..-.....++..||++||....
T Consensus 164 ~~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~--~-~~~id~-~~C~~Cg~Cv~~CP~~Al~~~~ 222 (314)
T TIGR02912 164 PQYDADRCIGCGACVKVCKKKAVGALSFEN--Y-KVVRDH-SKCIGCGECVLKCPTGAWTRSE 222 (314)
T ss_pred CceeCccCCcchHHHHhcChhhcCceeccC--C-eEEeCC-CcCcCcchhhhhCCHhhcccCc
Confidence 34688889999999999995 233332 3 233322 2233456788999999987553
No 152
>PRK07118 ferredoxin; Validated
Probab=81.84 E-value=0.57 Score=45.21 Aligned_cols=61 Identities=25% Similarity=0.421 Sum_probs=38.8
Q ss_pred cccccccccccCCCCccCCCC-cccccccccCceEEec---CCCC---------HHHHHHHHHcCCcccccccc
Q 019284 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYN---QCGI---------NEFVQQAIESCPVDCIHRTS 214 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP-~vF~~edd~G~a~V~~---q~g~---------~e~~~eAv~~CPv~AI~~~~ 214 (343)
..+.+|...|++|+.|...+| +.+.+.+......+.- +.+. -..-...+..||++||.+.+
T Consensus 161 g~~~id~~~C~~Cg~Cv~aCP~~ai~~~~~~~~v~v~c~~~~~g~~~~~~~~~~Ci~Cg~Cv~~CP~~AI~~~~ 234 (280)
T PRK07118 161 GLPVVDEDKCTGCGACVKACPRNVIELIPKSARVFVACNSKDKGKAVKKVCEVGCIGCGKCVKACPAGAITMEN 234 (280)
T ss_pred CeEEEChhhCcChhHHHHhcCccceeeeccccceeeeeeccccccccccccccccccchHHHhhCCcCcEEEeC
Confidence 346678899999999999999 4566665433333221 1110 01224678899999999854
No 153
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=81.54 E-value=0.74 Score=47.21 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=32.6
Q ss_pred cccccCCCCccCCCCcccccccccCceEEecCCCCHHHHHHHHHcCCccccccccch
Q 019284 160 EFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (343)
Q Consensus 160 e~~CigCg~C~~vaP~vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~ 216 (343)
+..|++|+.|..+||....+++ +. ..+......+++.||. ++.....+
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi~~~~--~~------~~~Ci~Cg~CidaCp~-a~~~~g~~ 277 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGIDIRD--GL------QLECINCGLCIDACDD-VMEKMGKP 277 (434)
T ss_pred CCCCCChhhhHHhCCCCCEeCC--CC------chhChhhhHHHHhCCC-hHHhcCCC
Confidence 5679999999999997754433 21 1223456789999998 65554443
No 154
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=80.60 E-value=0.39 Score=47.20 Aligned_cols=21 Identities=33% Similarity=0.657 Sum_probs=14.5
Q ss_pred ccccccccccCCCCccCCCCc
Q 019284 155 HVFVDEFSCIGCKNCNNVAPE 175 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~ 175 (343)
.+.+|...|++|+.|...||.
T Consensus 156 iV~ID~ekCiGCg~Cv~ACPy 176 (321)
T TIGR03478 156 IVLVDQERCKGYRYCVEACPY 176 (321)
T ss_pred eEEECHHHCcchHHHHHhCCC
Confidence 345677777777777777773
No 155
>PRK07118 ferredoxin; Validated
Probab=80.30 E-value=0.94 Score=43.71 Aligned_cols=54 Identities=24% Similarity=0.516 Sum_probs=37.6
Q ss_pred ccccccCCCCccCCCC-cccccccccCceEEecCCCCHHHHHHHHHcCCccccccccch
Q 019284 159 DEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (343)
Q Consensus 159 De~~CigCg~C~~vaP-~vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~ 216 (343)
+...|++|+.|...+| +.+.+++ +...+-.+ .-..--..++.||++||.+....
T Consensus 211 ~~~~Ci~Cg~Cv~~CP~~AI~~~~--~~~vId~~--~C~~Cg~C~~~CP~~AI~~~~~~ 265 (280)
T PRK07118 211 CEVGCIGCGKCVKACPAGAITMEN--NLAVIDQE--KCTSCGKCVEKCPTKAIRILNKP 265 (280)
T ss_pred cccccccchHHHhhCCcCcEEEeC--CcEEEcCC--cCCCHHHHHHhCCccccEeeccc
Confidence 4667999999999999 4566654 44433222 11234579999999999987664
No 156
>PRK13795 hypothetical protein; Provisional
Probab=79.42 E-value=0.63 Score=49.90 Aligned_cols=55 Identities=24% Similarity=0.442 Sum_probs=36.4
Q ss_pred cccccccccCCCCccCCCCcc-cccccccCceEEecCCCCHHHHHHHHHcCCcccccc
Q 019284 156 VFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~v-F~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~ 212 (343)
+.++...|++|+.|...||.. +.++++ .....+.. ........++..||+.+|..
T Consensus 576 ~v~~~~~C~~Cg~C~~~CP~~ai~~~~~-~~~~~id~-~~C~~Cg~C~~aCP~~a~~~ 631 (636)
T PRK13795 576 LLRRAAECVGCGVCVGACPTGAIRIEEG-KRKISVDE-EKCIHCGKCTEVCPVVKYKD 631 (636)
T ss_pred EEEccccCCCHhHHHHhCCcccEEeecC-CceEEech-hhcCChhHHHhhcCCCeeEe
Confidence 345678899999999999953 455442 22222322 22234567999999999875
No 157
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=78.95 E-value=1.7 Score=44.89 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=25.6
Q ss_pred ccccccccccCCC--CccCCCCcccc-cccccCceEEecCCCCHHHHHHHHHcCCccccccc
Q 019284 155 HVFVDEFSCIGCK--NCNNVAPEVFK-IEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (343)
Q Consensus 155 ~vfVDe~~CigCg--~C~~vaP~vF~-~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~ 213 (343)
.++.....|.+|+ .|..+||..-. ..++.|. .++.++ .-......+..||.+||.+.
T Consensus 175 ~m~y~p~~C~HC~nP~CV~ACPtGAI~k~eedGi-V~ID~d-kCiGCg~CV~ACPygAI~~n 234 (492)
T TIGR01660 175 FMMYLPRLCEHCLNPACVASCPSGAIYKREEDGI-VLIDQD-KCRGWRMCISGCPYKKIYFN 234 (492)
T ss_pred eEEECCCcCcCCCcccchhhCccCCeEEecCCCe-EEEehh-hccChHHHHHhCCCCCcEec
Confidence 3344555666665 66666664321 1222132 222221 01112455666666666654
No 158
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=77.10 E-value=1.8 Score=24.11 Aligned_cols=15 Identities=47% Similarity=1.158 Sum_probs=12.9
Q ss_pred ccccCCCCccCCCCc
Q 019284 161 FSCIGCKNCNNVAPE 175 (343)
Q Consensus 161 ~~CigCg~C~~vaP~ 175 (343)
..|++|+.|..++|.
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 359999999999984
No 159
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=76.36 E-value=1.8 Score=31.89 Aligned_cols=20 Identities=45% Similarity=0.866 Sum_probs=13.3
Q ss_pred ccccccccccCCCCccCCCC
Q 019284 155 HVFVDEFSCIGCKNCNNVAP 174 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP 174 (343)
.+.++...|+||+.|..++|
T Consensus 33 ~~~v~~~~C~GCg~C~~~CP 52 (59)
T PF14697_consen 33 KVPVNPDKCIGCGLCVKVCP 52 (59)
T ss_dssp SSECE-TT--S-SCCCCCSS
T ss_pred eEEeccccCcCcCcccccCC
Confidence 34567788999999999999
No 160
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=75.93 E-value=2.7 Score=41.07 Aligned_cols=54 Identities=22% Similarity=0.222 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCC----ChHHHHHHHHHHHHHHHcCChhHHHhhhhh
Q 019284 82 ATPEQIKKAYYNCMKACHPDLSGD----DPETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (343)
Q Consensus 82 as~~eIK~AYr~la~~~HPDk~~~----~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~ 135 (343)
++..+|+.+|+...+..||++... .....+.+..|.+||.||.+...|..+|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 567889999999999999998741 124678899999999999986665556554
No 161
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=75.68 E-value=0.75 Score=43.79 Aligned_cols=54 Identities=20% Similarity=0.417 Sum_probs=31.1
Q ss_pred ccccCCCCccCCCCc-ccccccc-----cCceEEecCCCCHHHHH--HHHHcCCcccccccc
Q 019284 161 FSCIGCKNCNNVAPE-VFKIEED-----FGRARVYNQCGINEFVQ--QAIESCPVDCIHRTS 214 (343)
Q Consensus 161 ~~CigCg~C~~vaP~-vF~~edd-----~G~a~V~~q~g~~e~~~--eAv~~CPv~AI~~~~ 214 (343)
..|++|+.|...||. ++.+... .|...+......-..-. ..+..||++||.+..
T Consensus 59 ~~Ci~Cg~Cv~aCP~~aI~~~~~~~~~~~g~p~~~~~~~~C~~C~~~~Cv~aCPtgAL~~~~ 120 (254)
T PRK09476 59 SACIRCGLCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMCEDIPCVKACPSGALDREL 120 (254)
T ss_pred hhCcCchHHHHhCCccccCccccccccccCCceeeecCCcCcCCCCCchhhccCccceEeec
Confidence 679999999999983 3333221 02111211111111222 488899999998753
No 162
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=74.30 E-value=5.6 Score=36.47 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCh
Q 019284 79 LPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDP 126 (343)
Q Consensus 79 ~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp 126 (343)
+++|+.+||.+|+.++..+|- + +++.-..|..||+.+.-.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~-----g---d~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYA-----G---DEKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-----C---CHHHHHHHHHHHHHHHHH
Confidence 478999999999999999992 2 234557899999865433
No 163
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=73.94 E-value=2.1 Score=49.00 Aligned_cols=51 Identities=33% Similarity=0.661 Sum_probs=38.0
Q ss_pred CcccccccccccCCCCccC--CCCcccccccccCceEEecC---CCCHHHHHHHHH-cCCc
Q 019284 153 KDHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQ---CGINEFVQQAIE-SCPV 207 (343)
Q Consensus 153 ~~~vfVDe~~CigCg~C~~--vaP~vF~~edd~G~a~V~~q---~g~~e~~~eAv~-~CPv 207 (343)
...++||+..|.|||.|.. -||-+.-.+.+||+.+.++| .++. .+++ -||.
T Consensus 649 ~~r~~In~~vCeGCgdC~~~snC~ai~p~et~~grK~~Idqs~Cn~d~----sC~~G~CPs 705 (1186)
T PRK13029 649 ARRVFINELVCEGCGDCSVQSNCLAVQPVETEFGRKRKINQSSCNKDF----SCVKGFCPS 705 (1186)
T ss_pred CccEEEcccccCCchhhhhccCCceeeeccccCCccEEECHhHCCCcc----ccccCCCCC
Confidence 3588999999999999965 56777667777888777877 3332 3445 8997
No 164
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=73.89 E-value=0.67 Score=50.08 Aligned_cols=70 Identities=16% Similarity=0.296 Sum_probs=43.9
Q ss_pred cccccccCCCCccCCCCccc-----ccccccCceEEecC---CCCHHHHHHHHHcCCccccccccchhhhhHHHHHHHH
Q 019284 158 VDEFSCIGCKNCNNVAPEVF-----KIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRV 228 (343)
Q Consensus 158 VDe~~CigCg~C~~vaP~vF-----~~edd~G~a~V~~q---~g~~e~~~eAv~~CPv~AI~~~~~~~l~~le~~~~~~ 228 (343)
.|...||-|..|+.+|-++- .+-++.+.+.+... .-+.+..=+.++.|||+||+-... +...-.+.+.+.
T Consensus 141 ~dm~RCI~C~RCVR~c~eiaG~~~l~~~~rg~~~~i~t~~~~~l~se~cGncv~vCPvGALt~K~~-~~~ar~wEl~k~ 218 (693)
T COG1034 141 YDMNRCILCTRCVRFCKEIAGTHELGVIKRGENSEIGTYLDQPLESELCGNCVDVCPVGALTSKPF-AFTARKWELKKT 218 (693)
T ss_pred cccccceechhhHHhhhhhcCccccceeecCCCceeecccccccccccccceeeeccccccccChH-HhhhccchhccC
Confidence 78899999999999886552 22222233333332 222345667899999999997665 444444445443
No 165
>PF13446 RPT: A repeated domain in UCH-protein
Probab=73.12 E-value=6 Score=29.03 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=24.7
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHH
Q 019284 70 DDYYAVLGLLPDATPEQIKKAYYNCMK 96 (343)
Q Consensus 70 ~d~Y~iLGv~~~as~~eIK~AYr~la~ 96 (343)
.+.|++|||+++.+.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999999887
No 166
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=73.07 E-value=7.4 Score=32.56 Aligned_cols=44 Identities=25% Similarity=0.386 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCChHH----HHHHHHHHHHHHHcC
Q 019284 81 DATPEQIKKAYYNCMKACHPDLSGDDPET----TNFCMFINEVYAVLS 124 (343)
Q Consensus 81 ~as~~eIK~AYr~la~~~HPDk~~~~~~a----~~~f~~I~eAY~vLs 124 (343)
..+..+++.|.|.+-++.|||..+..|+. ++-++.|+.-.+.|.
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~ 52 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLK 52 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHh
Confidence 45677899999999999999988876652 344555555555554
No 167
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=72.27 E-value=1.7 Score=35.39 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=20.6
Q ss_pred CcccccccccccCCCCccCCCCcc
Q 019284 153 KDHVFVDEFSCIGCKNCNNVAPEV 176 (343)
Q Consensus 153 ~~~vfVDe~~CigCg~C~~vaP~v 176 (343)
...+.+|...|++||.|..+||..
T Consensus 53 ~G~V~vd~e~CigCg~C~~~C~~~ 76 (95)
T PRK15449 53 DGSVRFDYAGCLECGTCRILGLGS 76 (95)
T ss_pred CCCEEEcCCCCCcchhhhhhcCCC
Confidence 457889999999999999999654
No 168
>PRK10194 ferredoxin-type protein; Provisional
Probab=71.51 E-value=2 Score=37.83 Aligned_cols=51 Identities=18% Similarity=0.370 Sum_probs=29.1
Q ss_pred ccCCCCccCCCCcc-ccccccc-Cce-EEecCCCCHHHHHHHHHcCCcccccccc
Q 019284 163 CIGCKNCNNVAPEV-FKIEEDF-GRA-RVYNQCGINEFVQQAIESCPVDCIHRTS 214 (343)
Q Consensus 163 CigCg~C~~vaP~v-F~~edd~-G~a-~V~~q~g~~e~~~eAv~~CPv~AI~~~~ 214 (343)
|++|+.|...+|.. +.++... |.. .++..+ .-..-...++.||++||.++.
T Consensus 106 ~~~C~~C~~~CP~~Ai~~~~~~~~~~~~~i~~~-~C~gCg~C~~~CP~~AI~~~~ 159 (163)
T PRK10194 106 SVECRRCQDSCEPMAIIFRPTLSGIYQPQLNSQ-LCNGCGACAASCPVSAITAEY 159 (163)
T ss_pred CCCcCcchhhCCHhHeEeeecCCCcccceeCcc-cCcCcchhhhhCCccceEecc
Confidence 37899999999853 3333211 211 122211 111245688999999998754
No 169
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=70.67 E-value=3.6 Score=41.68 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=36.9
Q ss_pred cccccccccccCCCCcc--CCCCcccccccccCceEEecCCCCHHHHHHHHHcCCccccccccch
Q 019284 154 DHVFVDEFSCIGCKNCN--NVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~--~vaP~vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~ 216 (343)
..+.++...|++|+.|. ..||..- +..+ . .+.. ........+++.||.+||.+....
T Consensus 295 ~~p~id~dkCi~Cg~C~~~~aCPt~A-I~~~-~---~Id~-~~Ci~CGaCV~aCP~~AI~~~~~~ 353 (391)
T TIGR03287 295 VRPKYNPERCENCDPCLVEEACPVPA-IKKD-G---TLNT-EDCFGCGYCAEICPGGAFEVNLGS 353 (391)
T ss_pred eeEEEchhhCcCCCCCcCCcCCCHhh-Eecc-c---eeCh-HhCcChHHHHhhCCccceEEeCCe
Confidence 34567888899999995 7888442 2221 1 2222 112234678999999999986553
No 170
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=70.22 E-value=1.7 Score=40.69 Aligned_cols=52 Identities=23% Similarity=0.475 Sum_probs=35.2
Q ss_pred cccccccccCCCCccCCCCcc-cccccccCceEEecCCCCHHHHHHHHHcCCccccc
Q 019284 156 VFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIH 211 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~v-F~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~ 211 (343)
..+|...|++|+.|...||.. +.+++ +... +.. ..-......+..||+++|.
T Consensus 169 ~~id~~~C~~C~~C~~aCP~~ai~~~~--~~~~-i~~-~~C~~C~~C~~~CP~~~~~ 221 (228)
T TIGR03294 169 KVVNQGLCMGCGTCAAACPTRAIEMED--GRPN-VNR-DRCIKCGACYVQCPRAFWP 221 (228)
T ss_pred EEEChhhCcChhHHHHhCCHhhEEEeC--CcEE-ECh-hhccCHHHHHHHcCCCCcc
Confidence 357888999999999999943 55544 3333 322 1122456789999998875
No 171
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=70.04 E-value=2.7 Score=48.02 Aligned_cols=52 Identities=31% Similarity=0.576 Sum_probs=37.9
Q ss_pred CcccccccccccCCCCccC--CCCcccccccccCceEEecC---CCCHHHHHHHHH-cCCcc
Q 019284 153 KDHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQ---CGINEFVQQAIE-SCPVD 208 (343)
Q Consensus 153 ~~~vfVDe~~CigCg~C~~--vaP~vF~~edd~G~a~V~~q---~g~~e~~~eAv~-~CPv~ 208 (343)
...++||+..|.|||.|.. -||-+--.+.+||+.+.++| .++. .+++ -||.-
T Consensus 635 ~~r~~In~~vCegCgdC~~~s~C~ai~p~~t~~grK~~Idqs~Cn~d~----sC~~G~CPsF 692 (1165)
T PRK09193 635 AKRVFINEAVCEGCGDCSVKSNCLSVEPVETEFGRKRRIDQSSCNKDF----SCLKGFCPSF 692 (1165)
T ss_pred CceEEEcccccCCchhhhhccCCcceeeccccCCccEEECHhHCCCcc----ccccCCCCCc
Confidence 3478999999999999965 56777666767888777877 3332 3445 89874
No 172
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=68.72 E-value=2.7 Score=48.19 Aligned_cols=60 Identities=18% Similarity=0.347 Sum_probs=36.3
Q ss_pred ccccccccCCCCccCCCCcc-ccc---cc-c-----------------c-Cce-EEecCCCCHHHHHHHHHcCCcc--cc
Q 019284 157 FVDEFSCIGCKNCNNVAPEV-FKI---EE-D-----------------F-GRA-RVYNQCGINEFVQQAIESCPVD--CI 210 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~v-F~~---ed-d-----------------~-G~a-~V~~q~g~~e~~~eAv~~CPv~--AI 210 (343)
..+...|++|+.|..+||.. +.. ++ + . +.. .+.-...+......+++.||+. ||
T Consensus 679 ~~~~~~Ci~Cg~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg~Cv~~CP~~~~Al 758 (1165)
T TIGR02176 679 VWVPDNCIQCNQCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCGNCVDICPAKEKAL 758 (1165)
T ss_pred eeccccCCCccchHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCccchhhhcCCCCccc
Confidence 35788899999999999844 111 10 0 0 000 0111122233466799999995 99
Q ss_pred ccccch
Q 019284 211 HRTSAQ 216 (343)
Q Consensus 211 ~~~~~~ 216 (343)
.+....
T Consensus 759 ~m~~~~ 764 (1165)
T TIGR02176 759 VMQPLA 764 (1165)
T ss_pred cccchh
Confidence 988665
No 173
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=67.83 E-value=2.6 Score=44.26 Aligned_cols=56 Identities=18% Similarity=0.369 Sum_probs=34.1
Q ss_pred ccccccccCC------CCccCCCCcc-cccccccCceEEecCCCCHHHHHHHHHcCCcccccccc
Q 019284 157 FVDEFSCIGC------KNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (343)
Q Consensus 157 fVDe~~CigC------g~C~~vaP~v-F~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~ 214 (343)
..+...|+.| +.|..+||.. +...++ +....+.. ..-......+..||++||.++.
T Consensus 500 ~~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~-~~~~~i~~-~~C~~Cg~C~~~CP~~Ai~~~~ 562 (564)
T PRK12771 500 RQEAARCLSCGNCFECDNCYGACPQDAIIKLGP-GRRYHFDY-DKCTGCHICADVCPCGAIEMGP 562 (564)
T ss_pred hhhcccCcccccccccchhhhhCChhheeeecC-CceEEEec-ccCcChhHHHhhcCcCceEecc
Confidence 3455666655 8999999865 333322 32222322 2223456789999999999864
No 174
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=66.19 E-value=2.2 Score=44.05 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=35.0
Q ss_pred ccccccccccCCCCccCCCCcc-cccccccCceEEecCCCCHHHHH-----HHHHcCCccccccc
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRT 213 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~v-F~~edd~G~a~V~~q~g~~e~~~-----eAv~~CPv~AI~~~ 213 (343)
.+.+|...|+||+.|...||-. -.++.+.+.+.-- ..-.+.+. ..+.+||+.|+.+-
T Consensus 208 iV~ID~dkCiGCg~CV~ACPygAI~~n~~~g~~~KC--d~C~~Rie~G~pPaCVeaCP~~Ar~fG 270 (492)
T TIGR01660 208 IVLIDQDKCRGWRMCISGCPYKKIYFNWKTGKSEKC--IFCYPRIEAGQPTVCSETCVGRIRYLG 270 (492)
T ss_pred eEEEehhhccChHHHHHhCCCCCcEecCCCCccccC--CCChhHHhCCCCCcchhhcChhhhhhh
Confidence 4568999999999999999943 2222221322111 11222221 58899999997655
No 175
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=65.32 E-value=3.7 Score=47.02 Aligned_cols=56 Identities=27% Similarity=0.529 Sum_probs=37.5
Q ss_pred CcccccccccccCCCCccC--CCCcccccccccCceEEecC---CCCHHHHHHHHH-cCCccccccc
Q 019284 153 KDHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQ---CGINEFVQQAIE-SCPVDCIHRT 213 (343)
Q Consensus 153 ~~~vfVDe~~CigCg~C~~--vaP~vF~~edd~G~a~V~~q---~g~~e~~~eAv~-~CPv~AI~~~ 213 (343)
...++||+..|.|||.|.. -||-+--.+.+||+.+.++| .++. .+++ -||. -++++
T Consensus 621 ~~~~~In~~vCegCg~C~~~s~C~ai~~~~t~~grK~~Id~s~Cn~~~----~C~~G~CPs-fvtv~ 682 (1159)
T PRK13030 621 DRRLFINEAVCEGCGDCGVQSNCLSVEPVETPFGRKRRIDQSSCNKDF----SCVNGFCPS-FVTVE 682 (1159)
T ss_pred CeeEEEcccccCCchhhhhccCCcceeeccccCCccEEECHHHCCCcc----ccccCCCCC-CeEec
Confidence 3478999999999999965 56666556666787667776 3332 2344 7886 34443
No 176
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=64.32 E-value=2.3 Score=45.50 Aligned_cols=17 Identities=12% Similarity=0.442 Sum_probs=10.7
Q ss_pred HHHHHHcCCcccccccc
Q 019284 198 VQQAIESCPVDCIHRTS 214 (343)
Q Consensus 198 ~~eAv~~CPv~AI~~~~ 214 (343)
....+..||.+||.+..
T Consensus 90 C~~C~~~CP~~ai~~~~ 106 (654)
T PRK12769 90 CKSCVVACPFGTMQIVL 106 (654)
T ss_pred cChhcccCCccCeeecc
Confidence 34566777777776653
No 177
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=63.01 E-value=7.9 Score=42.51 Aligned_cols=81 Identities=15% Similarity=0.308 Sum_probs=43.9
Q ss_pred ccccccccccCCCCccCCCCccccccccc-----Cce-EEecCCCCHHHHHHHHHcCCccccccccchhhhhHHHHHHHH
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDF-----GRA-RVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRV 228 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~vF~~edd~-----G~a-~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l~~le~~~~~~ 228 (343)
.+......|++|+.|...||..+.+.+.. |.. .+..............+.||.+. +-...++..-...
T Consensus 393 eLl~~~~kCI~CG~Cv~aCP~~l~i~e~i~~a~~G~l~~l~~~~d~C~~CG~C~evCP~gI------pIvemI~~Ar~~~ 466 (784)
T TIGR00314 393 ELMELANKCTQCGNCVRTCPNSLRVDEAMAHAQKGDLSKLEQLEEQCYACGRCEQACPKNI------PIISMITKAGEDR 466 (784)
T ss_pred HHhhhcccCCCcccchhhCCCCcchHHHHHHHhcCCccccccCHhhhhhhhHHhccCCCCC------CHHHHHHHHHHHH
Confidence 44445678999999999999765432110 110 11000112234566778899752 1123333333455
Q ss_pred HhhccceeccCCC
Q 019284 229 ERVNVAMMLSGMG 241 (343)
Q Consensus 229 ~~~~v~~~~~g~G 241 (343)
..+..|.++.|=|
T Consensus 467 v~~~k~~~r~GrG 479 (784)
T TIGR00314 467 LKNEKGKTRAGRG 479 (784)
T ss_pred HhhccceeeccCC
Confidence 6666666666655
No 178
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=61.17 E-value=4.1 Score=42.55 Aligned_cols=60 Identities=27% Similarity=0.377 Sum_probs=35.2
Q ss_pred cccccccccCCCCccCCCCcccccccccCceEEecCCCCHHHHHHHHHcCCccccccccchhhhhH
Q 019284 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLL 221 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l~~l 221 (343)
-.+|+..|+||+.|.. ||-. .+.-+ ++ +++.. .-.-.-.....||++||.+.......++
T Consensus 556 a~vde~~C~gC~~C~~-Cpf~-ais~~--ka-~v~~~-~C~gCG~C~~aCp~gai~~~~f~~eqi~ 615 (622)
T COG1148 556 ATVDEDKCTGCGICAE-CPFG-AISVD--KA-EVNPL-RCKGCGICSAACPSGAIDLAGFSDEQIL 615 (622)
T ss_pred cccchhhhcCCcceee-CCCC-ceecc--cc-ccChh-hhCcccchhhhCCcccchhcccCHHHHH
Confidence 3579999999999999 8722 12221 12 22210 0001124568899999998876544433
No 179
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=61.07 E-value=4.9 Score=42.90 Aligned_cols=56 Identities=27% Similarity=0.542 Sum_probs=37.3
Q ss_pred ccccccccccCCCCcc--CCCCcccccccccCceEEecC---CCCHHHHHHHHHcCCccccccccch
Q 019284 155 HVFVDEFSCIGCKNCN--NVAPEVFKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTSAQ 216 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~--~vaP~vF~~edd~G~a~V~~q---~g~~e~~~eAv~~CPv~AI~~~~~~ 216 (343)
.++||+..|.||+.|. .-||-++-.++ + +.+.++| .|.- .+++.||..||.-....
T Consensus 571 ~~~Vd~~~CtGC~~C~~~~~Cpsi~~~~~-~-~k~~id~~~C~GCg----~C~~iCP~~a~~~~~~~ 631 (640)
T COG4231 571 KYFVDEEKCTGCGDCIVLSGCPSIEPDPT-F-KKARIDPSSCNGCG----SCVEVCPSFAIKEGGEN 631 (640)
T ss_pred CceechhhcCCcHHHHhhcCCceEeecCC-C-Cceeecccccccch----hhhhcCchhheeccccc
Confidence 4889999999999997 45676665554 2 3445555 3332 23444999999866554
No 180
>PRK13409 putative ATPase RIL; Provisional
Probab=60.50 E-value=4.2 Score=43.28 Aligned_cols=22 Identities=32% Similarity=0.711 Sum_probs=19.0
Q ss_pred CcccccccccccCCCCccCCCC
Q 019284 153 KDHVFVDEFSCIGCKNCNNVAP 174 (343)
Q Consensus 153 ~~~vfVDe~~CigCg~C~~vaP 174 (343)
....++.|..|+|||.|+.-||
T Consensus 41 ~~~~~~~e~~c~~c~~c~~~cp 62 (590)
T PRK13409 41 DGKPVISEELCIGCGICVKKCP 62 (590)
T ss_pred CCCceeeHhhccccccccccCC
Confidence 3466788999999999999998
No 181
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=60.21 E-value=4 Score=30.92 Aligned_cols=21 Identities=38% Similarity=0.860 Sum_probs=16.9
Q ss_pred ccccccCCCCccCCCCccccc
Q 019284 159 DEFSCIGCKNCNNVAPEVFKI 179 (343)
Q Consensus 159 De~~CigCg~C~~vaP~vF~~ 179 (343)
....|+|||.|..++|...+|
T Consensus 48 ~~~~CVgCgrCv~~CP~~Idi 68 (69)
T PF13746_consen 48 GEGDCVGCGRCVRVCPAGIDI 68 (69)
T ss_pred CCccCCCcChHhhhcCCCCCc
Confidence 445699999999999976554
No 182
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=60.19 E-value=2.4 Score=40.92 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=32.8
Q ss_pred ccccccccccCCCCccCCCCcccccccccCceEEecCCCCHHHHHHHHHcCCccccccccc
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~ 215 (343)
...+|...|+.||.|..+|+-.--.-.. |..-++.+. .-+-.-...-.||+.||..+..
T Consensus 63 ~p~i~~e~C~~CG~C~~vC~f~Ai~~~~-~~~~~~~~~-lC~GCgaC~~~CP~~AI~~~~~ 121 (284)
T COG1149 63 IPEIDPEKCIRCGKCAEVCRFGAIVVLP-GGKPVLNPD-LCEGCGACSIVCPEPAIEEEPV 121 (284)
T ss_pred ccccChhhccccCcHHHhCCCCeEEEcC-CCceecCcc-cccCcccceeeCCCcccccccc
Confidence 3456777899999999998632111111 222222220 0112234567899999887655
No 183
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=58.92 E-value=15 Score=37.47 Aligned_cols=36 Identities=6% Similarity=-0.156 Sum_probs=22.1
Q ss_pred CCccccccccchhhhhHHHHHHHHHhhccceeccCCCC
Q 019284 205 CPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSGMGS 242 (343)
Q Consensus 205 CPv~AI~~~~~~~l~~le~~~~~~~~~~v~~~~~g~G~ 242 (343)
||..+..+.... -.++++|..+.++..+|..+|||.
T Consensus 42 C~~~~~e~~g~~--~t~~evl~ev~~d~~~~~~~~ggV 77 (404)
T TIGR03278 42 CTRSVWEINGDF--IPPQVVLGEVQTSLGFRTGRDTKV 77 (404)
T ss_pred CCchhhhhcCCc--CCHHHHHHHHHHHHHHhcCCCCEE
Confidence 777776544433 556677777776666665555555
No 184
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=58.51 E-value=4.3 Score=43.32 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=21.5
Q ss_pred CcccccccccccCCCCccCCCCccc
Q 019284 153 KDHVFVDEFSCIGCKNCNNVAPEVF 177 (343)
Q Consensus 153 ~~~vfVDe~~CigCg~C~~vaP~vF 177 (343)
.+.+.+|...|+||+.|.++||--+
T Consensus 600 ~~k~~id~~~C~GCg~C~~iCP~~a 624 (640)
T COG4231 600 FKKARIDPSSCNGCGSCVEVCPSFA 624 (640)
T ss_pred CCceeecccccccchhhhhcCchhh
Confidence 4778899999999999999998544
No 185
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=55.90 E-value=25 Score=38.55 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=29.4
Q ss_pred cccccccCCCCccCCCCccccccccc-----CceEEecC-CCCHHHHHHHHHcCCccc
Q 019284 158 VDEFSCIGCKNCNNVAPEVFKIEEDF-----GRARVYNQ-CGINEFVQQAIESCPVDC 209 (343)
Q Consensus 158 VDe~~CigCg~C~~vaP~vF~~edd~-----G~a~V~~q-~g~~e~~~eAv~~CPv~A 209 (343)
.+...|++||.|...||..+.+.+.. |....+.. ...........+.||+++
T Consensus 362 ~~~~kCI~CG~Cv~aCP~~l~i~e~i~~~~~G~~~~l~~~~~~Ct~CG~C~evCP~gI 419 (731)
T cd01916 362 ELAAKCTDCGWCTRACPNSLRIKEAMEAAKEGDFSGLADLFDQCVGCGRCEQECPKEI 419 (731)
T ss_pred HhhhcCCCCCcccccCCCCCcHHHHHHHHhcCChhhhhhhHhhhhhhhHHhhhCCCCC
Confidence 35567999999999999775432110 11000000 111223456788999866
No 186
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=54.68 E-value=12 Score=36.95 Aligned_cols=62 Identities=19% Similarity=0.300 Sum_probs=39.0
Q ss_pred CCcccccccccccCCC--CccCCCCcc-cccccccCceEEecCCCCHHHHHHHHHcCCccccccccc
Q 019284 152 PKDHVFVDEFSCIGCK--NCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (343)
Q Consensus 152 ~~~~vfVDe~~CigCg--~C~~vaP~v-F~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~ 215 (343)
+...++.....|..|+ .|..+||.. +...++.|.. ++.+.- -......+..||.+||.+...
T Consensus 120 ~~~~~~y~p~~C~hC~nP~Cv~aCPtgAI~k~eedGiV-~ID~ek-CiGCg~Cv~ACPygAi~~n~~ 184 (321)
T TIGR03478 120 PNNYYFYLPRICNHCTNPACLAACPTGAIYKREEDGIV-LVDQER-CKGYRYCVEACPYKKVYFNPQ 184 (321)
T ss_pred CCceEEEecccCCCCCCccchhhCCcCcEEEecCCCeE-EECHHH-CcchHHHHHhCCCCCcEecCC
Confidence 3345556778899999 799999954 2222222533 343311 123567889999999997654
No 187
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=53.16 E-value=4 Score=43.79 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=18.9
Q ss_pred ccccccccccCCCCccCCCCcc
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEV 176 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~v 176 (343)
.+..|..+||.||.|+.+|.++
T Consensus 610 ~i~~D~~kCI~CgrCv~~C~ev 631 (652)
T PRK12814 610 DIRFEREKCVDCGICVRTLEEY 631 (652)
T ss_pred CeEeccccccCchHHHHHHHHh
Confidence 4778999999999999998754
No 188
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=51.57 E-value=13 Score=36.73 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=36.7
Q ss_pred CCcccccccccccCCCCccCCCCcccccccccCceEEecCCCCHHHHHHHHHcCCccccccc
Q 019284 152 PKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (343)
Q Consensus 152 ~~~~vfVDe~~CigCg~C~~vaP~vF~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~ 213 (343)
......++++.|..|+.|..+||-.- |....+ +++ ..+..-...+..++||.+|+..-
T Consensus 184 ~~~~p~v~e~kc~~c~~cv~~cp~~A-i~~~~~-~~I--~~~~ci~c~~c~~ac~~gav~~~ 241 (354)
T COG2768 184 LDEKPVVVEEKCYDCGLCVKICPVGA-ITLTKV-VKI--DYEKCIGCGQCMEACPYGAVDQN 241 (354)
T ss_pred cccCceeeeecccccchhhhhCCCcc-eecccc-eee--chhhccchhhhhhhccCcccccc
Confidence 34566789999999999999998432 221101 111 11222345678899999998743
No 189
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=51.40 E-value=5.4 Score=41.49 Aligned_cols=18 Identities=39% Similarity=0.879 Sum_probs=16.6
Q ss_pred ccccccccCCCCccCCCC
Q 019284 157 FVDEFSCIGCKNCNNVAP 174 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP 174 (343)
.+.|..|+|||.|+.-||
T Consensus 46 vIsE~lCiGCGICvkkCP 63 (591)
T COG1245 46 VISEELCIGCGICVKKCP 63 (591)
T ss_pred eeEhhhhccchhhhccCC
Confidence 678899999999999998
No 190
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=51.33 E-value=5.4 Score=37.67 Aligned_cols=69 Identities=23% Similarity=0.340 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhcccccccCCCCCCCCCCccccccccc
Q 019284 83 TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFS 162 (343)
Q Consensus 83 s~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~~~~~~~~~~~~~~~~~~~vfVDe~~ 162 (343)
+.+++=+.|++.---.|+|.... +. . .+-.|+.|..|+.+. .
T Consensus 102 D~~~f~~~~~~ikp~~~~~~~~~-~~--~----------~~q~pe~~~~~~~~~-------------------------~ 143 (234)
T COG0479 102 DMEEFYEKLRKIKPYLIRDDEPD-PG--E----------RLQSPEEREKLDELS-------------------------E 143 (234)
T ss_pred ccHHHHHhhhccccceecCCcCC-Cc--c----------ccCCHHHHHHHHhhh-------------------------h
Confidence 45555555555555555542222 11 1 144577888777763 3
Q ss_pred ccCCCCccCCCCcccccccccCceEEec
Q 019284 163 CIGCKNCNNVAPEVFKIEEDFGRARVYN 190 (343)
Q Consensus 163 CigCg~C~~vaP~vF~~edd~G~a~V~~ 190 (343)
||.||.|...||.+ ..+.+|-+..++.
T Consensus 144 CI~Cg~C~s~CP~~-~~~~~f~GPa~l~ 170 (234)
T COG0479 144 CILCGCCTAACPSI-WWNPDFLGPAALR 170 (234)
T ss_pred ccccchhhhhCCcc-ccccCCcCHHHHH
Confidence 99999999999854 3444555444333
No 191
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=50.60 E-value=15 Score=35.54 Aligned_cols=55 Identities=15% Similarity=0.342 Sum_probs=35.5
Q ss_pred cccccccCCCC--ccCCCCc-c-cccccccCceEEecCCCCHHHHHHHHHcCCccccccccc
Q 019284 158 VDEFSCIGCKN--CNNVAPE-V-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (343)
Q Consensus 158 VDe~~CigCg~--C~~vaP~-v-F~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~ 215 (343)
.....|..|+. |..+||. . +..+++ |.. ++.++. -......+..||.++|.+...
T Consensus 88 ~~~~~C~hC~~p~Cv~aCP~~gA~~~~~~-G~V-~id~dk-CigC~~Cv~aCP~~a~~~~~~ 146 (283)
T TIGR01582 88 IRKDGCMHCREPGCLKACPAPGAIIQYQN-GIV-DFDHSK-CIGCGYCIVGCPFNIPRYDKV 146 (283)
T ss_pred ECCccCCCCCCccccCCCCcCCeEEEcCC-CcE-EEeHHH-CCcchHHHhhCCCCCcEEcCC
Confidence 45566999998 9999995 3 444432 543 333211 112346889999999998654
No 192
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=50.01 E-value=7.8 Score=40.56 Aligned_cols=60 Identities=23% Similarity=0.479 Sum_probs=37.6
Q ss_pred cccccccccccCCCCccCCCCc----ccccccccCceE-Ee---cC------CCCHH---HHHHHHHcCCccccccccch
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPE----VFKIEEDFGRAR-VY---NQ------CGINE---FVQQAIESCPVDCIHRTSAQ 216 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~----vF~~edd~G~a~-V~---~q------~g~~e---~~~eAv~~CPv~AI~~~~~~ 216 (343)
..-+|| ..|.|||.|..+||- .|...- |..+ ++ .| .-+.+ .+-.+...||-.||.+...+
T Consensus 218 kpryVd-d~CtgCg~C~~vCPve~~nefn~Gl--~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~q~~ 294 (622)
T COG1148 218 KPRYVD-DKCTGCGACSEVCPVEVPNEFNEGL--GKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLNQEP 294 (622)
T ss_pred cccccc-ccccccccccccCCcccCccccccc--ccceeeeccchhhcccccccChhhhccchhhhhcCCccccccCCCC
Confidence 344788 889999999999974 343221 2222 21 12 11222 34568899999999887765
No 193
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=48.08 E-value=4.8 Score=43.03 Aligned_cols=52 Identities=13% Similarity=0.351 Sum_probs=27.4
Q ss_pred ccccccCCCC--ccCCCCcc-cccccccCceEEecCCCCHHHHHHHHHcCCcccccccc
Q 019284 159 DEFSCIGCKN--CNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (343)
Q Consensus 159 De~~CigCg~--C~~vaP~v-F~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~ 214 (343)
+...|..|+. |...||.. +.+++ +. ..+... .-......+..||.+||.+..
T Consensus 52 ~~~~C~~C~~~~C~~~CP~~ai~~~~--~~-v~~d~~-~C~gC~~C~~~CP~~ai~~~~ 106 (639)
T PRK12809 52 NPVACHHCNNAPCVTACPVNALTFQS--DS-VQLDEQ-KCIGCKRCAIACPFGVVEMVD 106 (639)
T ss_pred cCCCCcCcCChhHHhhCCcCceeccc--cc-eecChh-hCcchhhHhhhcCCCCEEccC
Confidence 4556777775 77777643 33322 32 222211 112345677778888877654
No 194
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=47.57 E-value=7.4 Score=31.44 Aligned_cols=18 Identities=44% Similarity=0.868 Sum_probs=16.5
Q ss_pred cccccccCCCCccCCCCc
Q 019284 158 VDEFSCIGCKNCNNVAPE 175 (343)
Q Consensus 158 VDe~~CigCg~C~~vaP~ 175 (343)
+|-..|-|||.|+.+||.
T Consensus 63 idYdyCKGCGICa~vCP~ 80 (91)
T COG1144 63 IDYDYCKGCGICANVCPV 80 (91)
T ss_pred eEcccccCceechhhCCh
Confidence 788889999999999995
No 195
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=47.55 E-value=21 Score=33.76 Aligned_cols=53 Identities=25% Similarity=0.333 Sum_probs=34.5
Q ss_pred cccccCCCC--ccCCCCccc-ccccccCceEEecCCCCHHHHHHHHHcCCccccccccc
Q 019284 160 EFSCIGCKN--CNNVAPEVF-KIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (343)
Q Consensus 160 e~~CigCg~--C~~vaP~vF-~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~ 215 (343)
...|..|+. |..+||..- ..+++ |. .++.... -......+..||.+||.+...
T Consensus 97 ~~~C~~C~~p~Cv~~CP~~Ai~~~~~-G~-v~id~~~-CigC~~Cv~aCP~~Ai~~~~~ 152 (244)
T PRK14993 97 PRLCNHCDNPPCVPVCPVQATFQRED-GI-VVVDNKR-CVGCAYCVQACPYDARFINHE 152 (244)
T ss_pred chhcCCcCCccCccccCCCCEEECCC-CC-EEEcHHH-CCCHHHHHHhcCCCCCEEeCC
Confidence 567999997 999999542 22332 53 3333211 112456899999999998765
No 196
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=46.78 E-value=10 Score=34.15 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=19.1
Q ss_pred cccccccccccCCCCccCCCCcc
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPEV 176 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~v 176 (343)
....+|-..||.||.|..+||..
T Consensus 88 ~~~~In~grCIfCg~C~e~CPt~ 110 (172)
T COG1143 88 KRPDINLGRCIFCGLCVEVCPTG 110 (172)
T ss_pred ccceeccccccccCchhhhCchh
Confidence 35557889999999999999943
No 197
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=46.73 E-value=8.2 Score=34.69 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=18.4
Q ss_pred ccccccccccCCCCccCCCCcc
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEV 176 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~v 176 (343)
..-+|-..||.||.|...||--
T Consensus 144 rYdIDmtkCIyCG~CqEaCPvd 165 (212)
T KOG3256|consen 144 RYDIDMTKCIYCGFCQEACPVD 165 (212)
T ss_pred eecccceeeeeecchhhhCCcc
Confidence 4557889999999999999843
No 198
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=46.51 E-value=52 Score=33.26 Aligned_cols=85 Identities=18% Similarity=0.352 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHh-------cCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHhhhhhhcccccccCCCCCCCCCCccc
Q 019284 84 PEQIKKAYYNCMKA-------CHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHV 156 (343)
Q Consensus 84 ~~eIK~AYr~la~~-------~HPDk~~~~~~a~~~f~~I~eAY~vLsdp~~R~~YD~~~~~~~~~~~~~~~~~~~~~~v 156 (343)
.++|+++|++..+. |-| .+..-.--+.|...|.++..-.-...|..|..... ..-++++.
T Consensus 280 l~~v~~~~~~~~~v~Ct~C~yC~P--CP~gInIP~~f~lyN~~~~~~~~~~~~~~Y~~l~~-----~~~~~~~~------ 346 (391)
T COG1453 280 LEKVEEIYRESLKVPCTGCRYCLP--CPSGINIPEIFRLYNLAVAFDDVDYAKFRYNMLEN-----GGHWFPGP------ 346 (391)
T ss_pred HHHHHHHHHHHhcCCCccccccCc--CCCCCChHHHHHHHHHHHhhccchhhHHHHHHHhc-----cCccCCCC------
Confidence 35578888887643 334 33323356788888888765554555667766532 11122111
Q ss_pred ccccccccCCCCccCCCCccccccc
Q 019284 157 FVDEFSCIGCKNCNNVAPEVFKIEE 181 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~vF~~ed 181 (343)
.-+...|++||.|...||+..++.+
T Consensus 347 ~g~as~CieCgqCl~~CPq~l~Ip~ 371 (391)
T COG1453 347 KGKASDCIECGQCLEKCPQHLDIPE 371 (391)
T ss_pred cccccccchhhhhhhcCCCcCcHHH
Confidence 1234569999999999998876653
No 199
>COG1146 Ferredoxin [Energy production and conversion]
Probab=44.14 E-value=8.7 Score=28.60 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.7
Q ss_pred CcccccccccccCCCCccCCCCcc
Q 019284 153 KDHVFVDEFSCIGCKNCNNVAPEV 176 (343)
Q Consensus 153 ~~~vfVDe~~CigCg~C~~vaP~v 176 (343)
...+.++...|++|+.|...+|..
T Consensus 33 ~~~~~~~~e~C~~C~~C~~~CP~~ 56 (68)
T COG1146 33 GKPVVARPEECIDCGLCELACPVG 56 (68)
T ss_pred cceeEeccccCccchhhhhhCCcc
Confidence 455778889999999999999976
No 200
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=44.12 E-value=10 Score=35.13 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=34.6
Q ss_pred ccccccccc-----CCCCccCCCCc---ccccccc------cCceEEecCCCCHHHHHHHHHcCCcc--ccccccch
Q 019284 156 VFVDEFSCI-----GCKNCNNVAPE---VFKIEED------FGRARVYNQCGINEFVQQAIESCPVD--CIHRTSAQ 216 (343)
Q Consensus 156 vfVDe~~Ci-----gCg~C~~vaP~---vF~~edd------~G~a~V~~q~g~~e~~~eAv~~CPv~--AI~~~~~~ 216 (343)
+.+|...|+ +|+.|...||. ...++.. +....|..+ .-..--..+..||+. ||.+....
T Consensus 126 v~id~~~C~~~~g~~C~~C~~~CP~~~~AI~~~~~~~~~~~~~~p~Vd~~--~C~gCG~C~~~CP~~~~AI~v~~~~ 200 (213)
T TIGR00397 126 VLVGHETCLNYKGLNCSICVRVCPIRGEAISLKPIENERGRLQIPTVDSA--KCTGCGTCEKHCVLSEAAIRVLPRE 200 (213)
T ss_pred EEECCCCcccCCCCCcccchhhCCCCcceEEEecccccCCcccceEEecc--cCCCcchhhHhCCCCCCeEEEeehH
Confidence 446777887 99999999995 3333221 011122111 111234688999987 78776553
No 201
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=42.60 E-value=9.2 Score=29.80 Aligned_cols=19 Identities=37% Similarity=0.947 Sum_probs=16.8
Q ss_pred ccccccccCCCCccCCCCc
Q 019284 157 FVDEFSCIGCKNCNNVAPE 175 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~ 175 (343)
.+|...|++|+.|..++|.
T Consensus 66 ~i~~~~C~~Cg~C~~~CP~ 84 (91)
T TIGR02936 66 VANPGNCIGCGACARVCPK 84 (91)
T ss_pred ecCCccCcChhhhhhhCCH
Confidence 4688899999999999984
No 202
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=42.36 E-value=5.9 Score=37.67 Aligned_cols=58 Identities=21% Similarity=0.421 Sum_probs=34.3
Q ss_pred ccccccccc-----CCCCccCCCCc---ccccccc----cCc----eEEecCCCCHHHHHHHHHcCCcc--cccccc
Q 019284 156 VFVDEFSCI-----GCKNCNNVAPE---VFKIEED----FGR----ARVYNQCGINEFVQQAIESCPVD--CIHRTS 214 (343)
Q Consensus 156 vfVDe~~Ci-----gCg~C~~vaP~---vF~~edd----~G~----a~V~~q~g~~e~~~eAv~~CPv~--AI~~~~ 214 (343)
+.+|...|+ +|+.|...||. .+.++.. .|. .-+++.+ .-..-...+..||+. ||.+..
T Consensus 132 v~id~~~Ci~~~~~~C~~C~~~CP~~~~AI~~~~~~~~r~g~~~~~~p~Id~d-~C~gCG~C~~aCP~~~~AI~v~p 207 (254)
T PRK09476 132 VLVDQENCLNFQGLRCDVCYRVCPLIDKAITLELERNERTGKHAFFLPTVHSD-ACTGCGKCEKACVLEKAAIKVLP 207 (254)
T ss_pred eecchhhccccCCCchHHHhhhCCCccCeEEEEcccccccccccccceEEeHH-HCcCcChhhHhcCCCcceEEEeh
Confidence 347888898 89999999993 4444321 111 1122210 011234688999998 887543
No 203
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=39.97 E-value=6.5 Score=21.19 Aligned_cols=12 Identities=50% Similarity=1.367 Sum_probs=7.2
Q ss_pred ccCCCCccCCCC
Q 019284 163 CIGCKNCNNVAP 174 (343)
Q Consensus 163 CigCg~C~~vaP 174 (343)
|++|+.|..++|
T Consensus 1 C~~C~~C~~~Cp 12 (15)
T PF12798_consen 1 CTGCGACVEVCP 12 (15)
T ss_pred CCCchHHHHHhc
Confidence 455666666655
No 204
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=39.88 E-value=15 Score=35.59 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=18.7
Q ss_pred ccccccccccCCCCccCCCCcc
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEV 176 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~v 176 (343)
...+++..|.|||.|..+||..
T Consensus 93 ~~~~~~~lC~GCgaC~~~CP~~ 114 (284)
T COG1149 93 KPVLNPDLCEGCGACSIVCPEP 114 (284)
T ss_pred ceecCcccccCcccceeeCCCc
Confidence 4456789999999999999966
No 205
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=39.41 E-value=8.4 Score=26.90 Aligned_cols=22 Identities=32% Similarity=0.813 Sum_probs=13.7
Q ss_pred cccccccccccCCCCccCCCCc
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPE 175 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~ 175 (343)
..+.+|...|++|+.|..++|.
T Consensus 29 ~~~~~~~~~C~~C~~C~~~CP~ 50 (52)
T PF12838_consen 29 PKMVIDPDKCTGCGACVEVCPT 50 (52)
T ss_dssp TTSEETGGG----SHHHHHTTT
T ss_pred eEEEEechhCcCcChhhhhCcC
Confidence 4556788889999999888874
No 206
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=38.05 E-value=13 Score=36.54 Aligned_cols=35 Identities=31% Similarity=0.644 Sum_probs=20.1
Q ss_pred ccccccccccCCCCccCCCCcc-cccccccCceEEec
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYN 190 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~v-F~~edd~G~a~V~~ 190 (343)
.+.+|...|++||.|...||.. |.-++. |.+..+.
T Consensus 195 ~l~id~~~Ci~Cg~Ci~~Cp~~~~~~ek~-g~~i~VG 230 (317)
T COG2221 195 KLKIDGSKCIGCGKCIRACPKAAFRGEKV-GIAILVG 230 (317)
T ss_pred eEEEehhhccCccHHhhhCChhhcchhhc-cEEEEEc
Confidence 3456677777777777777732 333333 4444443
No 207
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.45 E-value=16 Score=35.77 Aligned_cols=25 Identities=36% Similarity=0.609 Sum_probs=18.6
Q ss_pred HHHHHHHhh---cCCCCCCCccCCccccC
Q 019284 315 ARRWREYSR---RGADQPPTFKLPEATTS 340 (343)
Q Consensus 315 ~~~~~~~~~---~~~~~~~~~~~~~~~~~ 340 (343)
-|||||+|. +...++|| |+|.+.+.
T Consensus 320 lrrwrE~sn~qa~~~Kkk~t-~~~sr~~k 347 (374)
T KOG1608|consen 320 LRRWREASNEQAKKEKKKLT-KKPSRSSK 347 (374)
T ss_pred HHHHHHhhhhhhHHhhcccc-cCcccchh
Confidence 489999987 44667888 88876543
No 208
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=37.18 E-value=13 Score=42.32 Aligned_cols=15 Identities=33% Similarity=0.915 Sum_probs=10.7
Q ss_pred cccccCCCCccCCCC
Q 019284 160 EFSCIGCKNCNNVAP 174 (343)
Q Consensus 160 e~~CigCg~C~~vaP 174 (343)
+..|++||.|..+||
T Consensus 925 ~~~C~~CG~C~~~CP 939 (1019)
T PRK09853 925 DAMCNECGNCAQFCP 939 (1019)
T ss_pred CccCccccchhhhCC
Confidence 466777777777776
No 209
>PRK09898 hypothetical protein; Provisional
Probab=36.72 E-value=18 Score=33.06 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=35.7
Q ss_pred cccccccccCCC--CccCCCCcc-cccccccCceEEecCCCCHHHHHHHHHcCCcccccccc
Q 019284 156 VFVDEFSCIGCK--NCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (343)
Q Consensus 156 vfVDe~~CigCg--~C~~vaP~v-F~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~ 214 (343)
+.++...|..|+ .|..+||.. +..++++|.. ++.... -..-...+..||.++|.+..
T Consensus 116 ~~~~~~~C~~C~~~~C~~~CP~gAi~~~~~~g~v-~vd~~~-CigC~~C~~aCP~~ai~~~~ 175 (208)
T PRK09898 116 LNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCI-TVDHKR-CIGCSACTTACPWMMATVNT 175 (208)
T ss_pred EEEeCccCCCccCcchhhhCCcceEEeeccCCeE-Eecccc-CCCcCcccccCCCCCCEecC
Confidence 345677899998 899999954 3444443533 333211 11234577899999998653
No 210
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=36.47 E-value=15 Score=36.59 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=19.6
Q ss_pred cccccccccccCCCCccCCCCc
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPE 175 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~ 175 (343)
..+.+|...|++||.|...||.
T Consensus 207 ~~~~id~~~Ci~Cg~Ci~~CP~ 228 (341)
T TIGR02066 207 KSLEVDVEKCIYCGNCYTMCPA 228 (341)
T ss_pred CceeeccccCCcCCchHHhCch
Confidence 4578899999999999999995
No 211
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=34.51 E-value=30 Score=39.39 Aligned_cols=68 Identities=19% Similarity=0.358 Sum_probs=42.5
Q ss_pred cccccccccCC----CCccCCCCccc--ccc-----cccCceEEecCCCCHHHHHHHHHcCCccccccccchhhhhHHHH
Q 019284 156 VFVDEFSCIGC----KNCNNVAPEVF--KIE-----EDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDE 224 (343)
Q Consensus 156 vfVDe~~CigC----g~C~~vaP~vF--~~e-----dd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l~~le~~ 224 (343)
+-.+...|.+| +.|..+||.-- .++ ..++... + ++.....-.++..||++|=...+.--|=..|+-
T Consensus 881 ~~~~~~rC~~C~~~C~~C~~vCP~~A~~~i~~~g~~~~~~~~~-~--~~~C~~CG~C~~~CP~~~~py~dk~t~f~~~~d 957 (1019)
T PRK09853 881 VAQEAARCLECNYVCEKCVDVCPNRANVSIAVPGFQNRFQIVH-L--DAMCNECGNCAQFCPWNGKPYKDKITLFSLEED 957 (1019)
T ss_pred ccccccccCCcccccchhhhhCCcccccccccCCcccCCceEE-c--CccCccccchhhhCCCCCCcccccceEEcchhh
Confidence 34567789999 99999999642 222 1112222 2 222234457889999999877776655556655
Q ss_pred HH
Q 019284 225 MR 226 (343)
Q Consensus 225 ~~ 226 (343)
|.
T Consensus 958 ~~ 959 (1019)
T PRK09853 958 FE 959 (1019)
T ss_pred hh
Confidence 54
No 212
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=33.37 E-value=1.5e+02 Score=23.30 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=24.6
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcC
Q 019284 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACH 99 (343)
Q Consensus 69 ~~d~Y~iLGv~~~as~~eIK~AYr~la~~~H 99 (343)
.+|.-+++|+++-++..||+.|-++..+++.
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlS 32 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLS 32 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhc
Confidence 3466788999999999999998876666553
No 213
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=31.19 E-value=18 Score=33.49 Aligned_cols=20 Identities=30% Similarity=0.627 Sum_probs=17.2
Q ss_pred cccccccccCCCCccCCCCc
Q 019284 156 VFVDEFSCIGCKNCNNVAPE 175 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~ 175 (343)
..+|...|++||.|...||.
T Consensus 170 p~Vd~~~C~gCG~C~~~CP~ 189 (213)
T TIGR00397 170 PTVDSAKCTGCGTCEKHCVL 189 (213)
T ss_pred eEEecccCCCcchhhHhCCC
Confidence 35688899999999999983
No 214
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=31.11 E-value=26 Score=32.98 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=16.5
Q ss_pred cccCCCCccCCCCcccccccccC
Q 019284 162 SCIGCKNCNNVAPEVFKIEEDFG 184 (343)
Q Consensus 162 ~CigCg~C~~vaP~vF~~edd~G 184 (343)
.||.||.|...||. +..+++|.
T Consensus 150 ~CI~Cg~C~saCP~-~~~~~~f~ 171 (239)
T PRK13552 150 RCIECGCCVAACGT-KQMREDFV 171 (239)
T ss_pred hccccchhHhhCCC-CccCCCcc
Confidence 49999999999994 44444554
No 215
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=30.29 E-value=21 Score=41.29 Aligned_cols=21 Identities=29% Similarity=0.933 Sum_probs=18.0
Q ss_pred cccccccccCCCCccCCCCcc
Q 019284 156 VFVDEFSCIGCKNCNNVAPEV 176 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~v 176 (343)
+.++...|++||.|..+||..
T Consensus 734 i~i~~~~C~gCg~Cv~~CP~~ 754 (1165)
T TIGR02176 734 IQISPLDCTGCGNCVDICPAK 754 (1165)
T ss_pred EEeccccCcCccchhhhcCCC
Confidence 456788999999999999964
No 216
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=29.96 E-value=21 Score=32.24 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=19.6
Q ss_pred ccccccccCCCCccCCCCcc-cccccc
Q 019284 157 FVDEFSCIGCKNCNNVAPEV-FKIEED 182 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~v-F~~edd 182 (343)
.+|...|++||.|..+||.. ..+..+
T Consensus 98 ~id~~~Ci~Cg~Cv~aCP~~AI~~~~~ 124 (183)
T TIGR00403 98 SIDFGVCIFCGNCVEYCPTNCLSMTEE 124 (183)
T ss_pred ecCcccccCcCchhhhcCCCCeecccc
Confidence 35677899999999999953 445444
No 217
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=29.88 E-value=11 Score=33.51 Aligned_cols=22 Identities=27% Similarity=0.753 Sum_probs=19.0
Q ss_pred cccccccccccCCCCccCCCCc
Q 019284 154 DHVFVDEFSCIGCKNCNNVAPE 175 (343)
Q Consensus 154 ~~vfVDe~~CigCg~C~~vaP~ 175 (343)
..+++|...|+||+.|...++.
T Consensus 3 ~~~~~d~~~C~gC~~C~~aC~~ 24 (181)
T PRK10330 3 RFIIADASKCIGCRTCEVACVV 24 (181)
T ss_pred cEEEeCcccCcCccHHHHHHHH
Confidence 3577899999999999998874
No 218
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.43 E-value=89 Score=26.83 Aligned_cols=51 Identities=14% Similarity=0.138 Sum_probs=38.3
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcC
Q 019284 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLS 124 (343)
Q Consensus 70 ~d~Y~iLGv~~~as~~eIK~AYr~la~~~HPDk~~~~~~a~~~f~~I~eAY~vLs 124 (343)
..--.||+|+...+.++|.+.|..|-....+.+.+. .-.-.+|-.|-+-|-
T Consensus 59 qEa~qILnV~~~ln~eei~k~yehLFevNdkskGGS----FYLQSKVfRAkErld 109 (132)
T KOG3442|consen 59 QEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS----FYLQSKVFRAKERLD 109 (132)
T ss_pred HHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc----eeehHHHHHHHHHHH
Confidence 456789999999999999999999999988887665 222234455555553
No 219
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=29.04 E-value=26 Score=30.76 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=16.6
Q ss_pred ccccccccCCCCccCCCCc
Q 019284 157 FVDEFSCIGCKNCNNVAPE 175 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~ 175 (343)
.++...|++|+.|..+||.
T Consensus 93 ~i~~~~C~~Cg~Cv~~CP~ 111 (164)
T PRK05888 93 DINFGRCIFCGFCEEACPT 111 (164)
T ss_pred ecCCCcCcccCcchhhcCc
Confidence 3677889999999999995
No 220
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=28.36 E-value=37 Score=34.56 Aligned_cols=35 Identities=20% Similarity=0.518 Sum_probs=26.6
Q ss_pred ccccccccccCCCCccCCCCcccccccccCceEEe
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVY 189 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~vF~~edd~G~a~V~ 189 (343)
.+.+|...|+.|+.|..++|.......+-|....+
T Consensus 266 ~~~id~~~C~~Cm~Ci~~~p~a~~~g~~~G~~ilv 300 (402)
T TIGR02064 266 ELSIDNRECVRCMHCINKMPKALHPGDERGVTILI 300 (402)
T ss_pred eEEEcchhcCcCccccccCcccccCCCCCeEEEEE
Confidence 57788999999999999999876665443554444
No 221
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=28.27 E-value=17 Score=31.13 Aligned_cols=20 Identities=40% Similarity=0.680 Sum_probs=17.1
Q ss_pred ccccccccCCCCccCCCCcc
Q 019284 157 FVDEFSCIGCKNCNNVAPEV 176 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~v 176 (343)
.++...|++||.|..+||..
T Consensus 85 ~i~~~~C~~Cg~Cv~vCP~~ 104 (133)
T PRK09625 85 GVDYSHCKGCGVCVEVCPTN 104 (133)
T ss_pred EeCcCcCcChhHHHHHCCcC
Confidence 46777899999999999965
No 222
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=27.36 E-value=32 Score=33.41 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=19.4
Q ss_pred ccccccccccCCCCccCCCCccc
Q 019284 155 HVFVDEFSCIGCKNCNNVAPEVF 177 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~vF 177 (343)
.+.+|...|++|+.|..+||...
T Consensus 195 ~~~id~~~C~~Cg~Cv~~CP~~A 217 (314)
T TIGR02912 195 KVVRDHSKCIGCGECVLKCPTGA 217 (314)
T ss_pred eEEeCCCcCcCcchhhhhCCHhh
Confidence 45678889999999999999653
No 223
>PRK06273 ferredoxin; Provisional
Probab=26.99 E-value=31 Score=30.73 Aligned_cols=21 Identities=24% Similarity=0.573 Sum_probs=17.8
Q ss_pred cccccccccCCCCccCCCCcc
Q 019284 156 VFVDEFSCIGCKNCNNVAPEV 176 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~v 176 (343)
..+|...|++|+.|..+||..
T Consensus 86 ~~Id~~kCi~Cg~C~~aCP~~ 106 (165)
T PRK06273 86 PKIDYEKCVYCLYCHDFCPVF 106 (165)
T ss_pred eecccccCcCCCCcchhCCHh
Confidence 456788899999999999964
No 224
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=26.61 E-value=23 Score=35.85 Aligned_cols=25 Identities=32% Similarity=0.655 Sum_probs=19.8
Q ss_pred cccccccccCCCCccCCCCc--ccccc
Q 019284 156 VFVDEFSCIGCKNCNNVAPE--VFKIE 180 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~--vF~~e 180 (343)
..++...|++|+.|...||. .+.+.
T Consensus 372 ~~i~~~~C~~Cg~C~~~CP~~~Ai~~~ 398 (420)
T PRK08318 372 PEVIEEECVGCNLCAHVCPVEGCITMG 398 (420)
T ss_pred EEechhhCcccchHHhhCCCCCCEEEe
Confidence 45788999999999999996 44443
No 225
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=26.43 E-value=31 Score=28.35 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=19.5
Q ss_pred ccccccccCCCCccCCCCcc-cccccc
Q 019284 157 FVDEFSCIGCKNCNNVAPEV-FKIEED 182 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~v-F~~edd 182 (343)
.++...|++|+.|..+||.. +.+...
T Consensus 78 ~~~~~~C~~Cg~Cv~~CP~~al~~~~~ 104 (122)
T TIGR01971 78 QINFGRCIFCGLCEEACPTDAIVLTPE 104 (122)
T ss_pred eECcccCCCCCchhhhCCCccccccce
Confidence 35677799999999999954 555543
No 226
>PRK06991 ferredoxin; Provisional
Probab=26.19 E-value=22 Score=34.29 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=17.6
Q ss_pred cccccccccCCCCccCCCCcc
Q 019284 156 VFVDEFSCIGCKNCNNVAPEV 176 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~v 176 (343)
..++...|++||.|..+||..
T Consensus 110 ~~v~~~~CigCg~Cv~vCP~~ 130 (270)
T PRK06991 110 HTVLADLCTGCDLCVPPCPVD 130 (270)
T ss_pred eeeCHhhCCCchHHHhhCCcC
Confidence 346778899999999999954
No 227
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=25.94 E-value=28 Score=30.79 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=18.9
Q ss_pred ccccccccCCCCccCCCCcc-ccccc
Q 019284 157 FVDEFSCIGCKNCNNVAPEV-FKIEE 181 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~v-F~~ed 181 (343)
.+|...|++|+.|..+||.. +.+..
T Consensus 95 ~id~~~C~~Cg~C~~~CP~~AI~~~~ 120 (167)
T CHL00014 95 SIDFGVCIFCGNCVEYCPTNCLSMTE 120 (167)
T ss_pred cCCCCcCcCccchHhhcCcCceecCC
Confidence 35667799999999999964 44443
No 228
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=25.75 E-value=27 Score=28.53 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=17.4
Q ss_pred cccccccccCCCCccCCCCcc
Q 019284 156 VFVDEFSCIGCKNCNNVAPEV 176 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~v 176 (343)
..+|...|++|+.|...||..
T Consensus 76 ~~id~~~C~~Cg~Cv~~CP~~ 96 (105)
T PRK09624 76 PVFDYDYCKGCGICANECPTK 96 (105)
T ss_pred EEECchhCCCcCchhhhcCcC
Confidence 456778899999999999953
No 229
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=25.73 E-value=34 Score=37.78 Aligned_cols=20 Identities=35% Similarity=0.780 Sum_probs=16.6
Q ss_pred ccccccccCCCCccCCCCcc
Q 019284 157 FVDEFSCIGCKNCNNVAPEV 176 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~v 176 (343)
-+.+..|..||.|+.+||-.
T Consensus 188 ~i~~SSCVsCG~CvtVCP~n 207 (978)
T COG3383 188 PINESSCVSCGACVTVCPVN 207 (978)
T ss_pred ccccccccccCccceecchh
Confidence 35667799999999999954
No 230
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=25.62 E-value=40 Score=35.33 Aligned_cols=62 Identities=27% Similarity=0.373 Sum_probs=37.8
Q ss_pred cccccccc--C-CCCccCCCCcc------cccccccCceEEecCCCCHHHHHHHHHcCCccccccccchhhhhHH
Q 019284 157 FVDEFSCI--G-CKNCNNVAPEV------FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLE 222 (343)
Q Consensus 157 fVDe~~Ci--g-Cg~C~~vaP~v------F~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~~~l~~le 222 (343)
.+|...|. - +-.|...||-+ ..++++.|+. ++.+.- .--.--++.-||-+||.++.-+ ..||
T Consensus 7 vvd~D~C~PkkC~~eC~~yCP~vrtg~~~I~i~~~~gkp-vIsE~l-CiGCGICvkkCPF~AI~IvnLP--~eLe 77 (591)
T COG1245 7 VVDYDRCQPKKCGYECIKYCPVVRTGKETIEIDEDTGKP-VISEEL-CIGCGICVKKCPFDAISIVNLP--EELE 77 (591)
T ss_pred EeehhccCccccchhhhhcCCCccCCCeeEEecCCCCCc-eeEhhh-hccchhhhccCCcceEEEecCc--hhhc
Confidence 35777775 2 35788888843 4555554555 333210 0113357889999999999876 4444
No 231
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=24.60 E-value=20 Score=33.50 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=22.9
Q ss_pred cccccccccCCCCccCCCCcccccccc
Q 019284 156 VFVDEFSCIGCKNCNNVAPEVFKIEED 182 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~vF~~edd 182 (343)
..++...|++|+.|...||..|..+++
T Consensus 198 ~~i~~~~C~~C~~C~~~CP~~~~~~~~ 224 (228)
T TIGR03294 198 PNVNRDRCIKCGACYVQCPRAFWPEYE 224 (228)
T ss_pred EEEChhhccCHHHHHHHcCCCCcchhh
Confidence 457888899999999999999877653
No 232
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=24.42 E-value=30 Score=30.09 Aligned_cols=56 Identities=18% Similarity=0.244 Sum_probs=34.7
Q ss_pred cccccccCCC--CccCCCCcc-cccccccCceEEecCCCCHHHHHHHHHcCCccccccccc
Q 019284 158 VDEFSCIGCK--NCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (343)
Q Consensus 158 VDe~~CigCg--~C~~vaP~v-F~~edd~G~a~V~~q~g~~e~~~eAv~~CPv~AI~~~~~ 215 (343)
.....|++|+ .|..++|.. +..+.+.|.. ++.... -..-...+..||.+||.+...
T Consensus 59 ~~~~~C~~C~~~~C~~~CP~~ai~~~~~~~~~-~i~~~~-C~~C~~C~~aCP~~ai~~~~~ 117 (161)
T TIGR02951 59 YISISCNHCADPACVKNCPTGAMYKREEDGLV-LVDQDK-CIGCRYCVWACPYGAPQYDPQ 117 (161)
T ss_pred EcCccCCCcCCcchHHhCCCCCEEeecCCCcE-EECHHh-CCCchHHHhhCCCCCcEEcCC
Confidence 4467799999 899999954 3333121432 332211 112356889999999998654
No 233
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=24.20 E-value=25 Score=34.70 Aligned_cols=25 Identities=20% Similarity=0.644 Sum_probs=19.5
Q ss_pred ccccccccCCCCccCCCCc-cccccc
Q 019284 157 FVDEFSCIGCKNCNNVAPE-VFKIEE 181 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~-vF~~ed 181 (343)
.++...|++|+.|..+||. .+.+.+
T Consensus 8 vi~~~~C~gCg~C~~~CP~~aI~~~~ 33 (341)
T PRK09326 8 VIEYDVCTACGACEAVCPIGAITVDK 33 (341)
T ss_pred EECcccCcChHHHHHhCCHhhheccc
Confidence 4678899999999999995 444543
No 234
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=24.12 E-value=46 Score=32.78 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=13.1
Q ss_pred cccCCCCccCCCCcc
Q 019284 162 SCIGCKNCNNVAPEV 176 (343)
Q Consensus 162 ~CigCg~C~~vaP~v 176 (343)
.|+.||.|...||-.
T Consensus 153 ~Ci~CG~C~s~CP~~ 167 (329)
T PRK12577 153 NCILCGACYSECNAR 167 (329)
T ss_pred hCcccCcccccCCCC
Confidence 499999999999954
No 235
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=24.10 E-value=37 Score=32.30 Aligned_cols=17 Identities=35% Similarity=0.843 Sum_probs=14.7
Q ss_pred ccccCCCCccCCCCccc
Q 019284 161 FSCIGCKNCNNVAPEVF 177 (343)
Q Consensus 161 ~~CigCg~C~~vaP~vF 177 (343)
..||.||.|...||...
T Consensus 157 ~~CI~CG~C~saCP~~~ 173 (250)
T PRK07570 157 AACIGCGACVAACPNGS 173 (250)
T ss_pred cccCCCcccccccCCcc
Confidence 45999999999999764
No 236
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=23.77 E-value=26 Score=38.28 Aligned_cols=18 Identities=33% Similarity=0.850 Sum_probs=15.8
Q ss_pred ccccccCCCCccCCCCcc
Q 019284 159 DEFSCIGCKNCNNVAPEV 176 (343)
Q Consensus 159 De~~CigCg~C~~vaP~v 176 (343)
++..||+||.|..+||..
T Consensus 368 ~e~~CI~CG~Cv~aCP~~ 385 (695)
T PRK05035 368 PEQPCIRCGACADACPAS 385 (695)
T ss_pred chhhcCCcccHHHHCCcc
Confidence 568899999999999954
No 237
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=23.75 E-value=77 Score=34.07 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=19.5
Q ss_pred ccccCCCCccCCCCcccccccc
Q 019284 161 FSCIGCKNCNNVAPEVFKIEED 182 (343)
Q Consensus 161 ~~CigCg~C~~vaP~vF~~edd 182 (343)
..|..||.|...||+.+.+.+.
T Consensus 400 ~kc~~cG~C~~~CP~~l~i~ea 421 (772)
T COG1152 400 RKCTYCGNCMRACPNELDIPEA 421 (772)
T ss_pred HhcccccchhccCCcccchHHH
Confidence 6799999999999999988763
No 238
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=23.46 E-value=72 Score=16.67 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHcC
Q 019284 112 FCMFINEVYAVLS 124 (343)
Q Consensus 112 ~f~~I~eAY~vLs 124 (343)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888774
No 239
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=23.30 E-value=58 Score=36.02 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=17.5
Q ss_pred cccccccccCCCCccCCCCccc
Q 019284 156 VFVDEFSCIGCKNCNNVAPEVF 177 (343)
Q Consensus 156 vfVDe~~CigCg~C~~vaP~vF 177 (343)
+..+...|++|+.|...||..+
T Consensus 399 l~~eadrCI~CG~Cv~aCP~~l 420 (781)
T PRK00941 399 LKELAKKCTECGWCVRVCPNEL 420 (781)
T ss_pred HHHhhhhCcCCCCccccCCCCc
Confidence 3345567999999999999764
No 240
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=23.10 E-value=36 Score=32.99 Aligned_cols=18 Identities=39% Similarity=0.839 Sum_probs=15.3
Q ss_pred cccccccCCCCccCCCCc
Q 019284 158 VDEFSCIGCKNCNNVAPE 175 (343)
Q Consensus 158 VDe~~CigCg~C~~vaP~ 175 (343)
+|...|.+|+.|..+||.
T Consensus 286 ~d~~~C~gCg~C~~~CP~ 303 (312)
T PRK14028 286 FDYQYCKGCGVCAEVCPT 303 (312)
T ss_pred CCcccCcCcCchhhhCCH
Confidence 455779999999999994
No 241
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=22.27 E-value=32 Score=32.73 Aligned_cols=21 Identities=19% Similarity=0.732 Sum_probs=18.0
Q ss_pred ccccccccccCCCCccCCCCc
Q 019284 155 HVFVDEFSCIGCKNCNNVAPE 175 (343)
Q Consensus 155 ~vfVDe~~CigCg~C~~vaP~ 175 (343)
.+.++...|++||.|...||.
T Consensus 76 ~~~~~~~~C~~Cg~C~~~CP~ 96 (295)
T TIGR02494 76 RIIIRREKCTHCGKCTEACPS 96 (295)
T ss_pred ceeechhhcCchhHhhccCcH
Confidence 456788899999999999984
No 242
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=21.29 E-value=41 Score=30.02 Aligned_cols=25 Identities=28% Similarity=0.599 Sum_probs=19.2
Q ss_pred ccccccccCCCCccCCCCcc-ccccc
Q 019284 157 FVDEFSCIGCKNCNNVAPEV-FKIEE 181 (343)
Q Consensus 157 fVDe~~CigCg~C~~vaP~v-F~~ed 181 (343)
.+|...|++||.|..+||.. ..+..
T Consensus 69 ~i~~~~C~~Cg~C~~vCP~~AI~~~~ 94 (180)
T PRK12387 69 EFNLGRCIFCGRCEEVCPTAAIKLSQ 94 (180)
T ss_pred eeccccCcCccchhhhcCcCceEccC
Confidence 46778899999999999953 34444
No 243
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=21.01 E-value=43 Score=33.34 Aligned_cols=23 Identities=26% Similarity=0.878 Sum_probs=18.4
Q ss_pred ccccccCCCCccCCCCccccccc
Q 019284 159 DEFSCIGCKNCNNVAPEVFKIEE 181 (343)
Q Consensus 159 De~~CigCg~C~~vaP~vF~~ed 181 (343)
....|+|||.|...||-...+.+
T Consensus 299 G~~~CvgCGrC~~~CP~~idi~~ 321 (334)
T TIGR02910 299 GYHMCVGCGRCDDICPEYISFSN 321 (334)
T ss_pred CccccCCcCchhhhCCCCCCHHH
Confidence 35679999999999997766543
No 244
>PF07830 PP2C_C: Protein serine/threonine phosphatase 2C, C-terminal domain; InterPro: IPR012911 Protein phosphatase 2C (PP2C) is involved in regulating cellular responses to stress in various eukaryotes. It consists of two domains: an N-terminal catalytic domain and a C-terminal domain characteristic of mammalian PP2Cs. This domain consists of three antiparallel alpha helices, one of which packs against two corresponding alpha-helices of the N-terminal domain. The C-terminal domain does not seem to play a role in catalysis, but it may provide protein substrate specificity due to the cleft that is created between it and the catalytic domain []. ; GO: 0000287 magnesium ion binding, 0004721 phosphoprotein phosphatase activity, 0030145 manganese ion binding; PDB: 2P8E_A 3FXL_A 3FXO_A 1A6Q_A 3FXK_A 3FXM_A 3FXJ_A.
Probab=20.41 E-value=1.2e+02 Score=24.05 Aligned_cols=38 Identities=18% Similarity=0.086 Sum_probs=25.3
Q ss_pred hhhhhHHHHHHHHHhhccceeccCCCCCCcchHHHHHH
Q 019284 216 QQLSLLEDEMRRVERVNVAMMLSGMGSGSADVFRMASS 253 (343)
Q Consensus 216 ~~l~~le~~~~~~~~~~v~~~~~g~G~~~~~~f~~a~~ 253 (343)
.+...|..+|..+..++..-++=|||.++..+|....|
T Consensus 42 ~~~~~l~~V~~~L~~e~ip~LPPGGGl~sKr~~Ie~vy 79 (81)
T PF07830_consen 42 EENPDLVYVMRTLASEDIPGLPPGGGLASKRSVIEAVY 79 (81)
T ss_dssp -----HHHHHHHHHHTT-SS--TTTTCGGGHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhccCCCCcCCcCHHHHHHHHHHHh
Confidence 34556677888888888888889999999988877665
No 245
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=20.40 E-value=16 Score=25.67 Aligned_cols=16 Identities=38% Similarity=0.901 Sum_probs=10.6
Q ss_pred ccccCCCCccCCCCcc
Q 019284 161 FSCIGCKNCNNVAPEV 176 (343)
Q Consensus 161 ~~CigCg~C~~vaP~v 176 (343)
..|++||.|..++|-.
T Consensus 3 ~~Ci~Cg~C~~~CP~~ 18 (57)
T PF13183_consen 3 SKCIRCGACTSVCPVY 18 (57)
T ss_dssp HC--S-SHHHHCSHHH
T ss_pred HHccCccChHHHChhh
Confidence 4699999999999943
No 246
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=20.38 E-value=50 Score=28.25 Aligned_cols=14 Identities=29% Similarity=0.987 Sum_probs=12.9
Q ss_pred cccCCCCccCCCCc
Q 019284 162 SCIGCKNCNNVAPE 175 (343)
Q Consensus 162 ~CigCg~C~~vaP~ 175 (343)
.|+.||.|...||-
T Consensus 3 ~Ci~CG~C~~~CP~ 16 (144)
T TIGR03290 3 ACYQCGTCTGSCPS 16 (144)
T ss_pred cccCCCCCcCcCCC
Confidence 59999999999995
Done!