BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019290
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 146/297 (49%), Gaps = 16/297 (5%)
Query: 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLC 95
P S FD +G Y V DGR++K++ NSG+ +FA +P+ + C+ ST+ PLC
Sbjct: 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLC 79
Query: 96 GRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI 155
GR I +N LYI D Y+ L VVG GG A QLA+S G+PF++ + +D TGI
Sbjct: 80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI 139
Query: 156 VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXX 215
VYFTD S + R + T D++GRL+KYDP K T++ L P G
Sbjct: 140 VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFV 199
Query: 216 XXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNK 275
+ +I+++WL+G + T ++ ++P P NIK ++ G FW+ S+ +++ N
Sbjct: 200 LVAEFLSHQIVKYWLEGPKKG-TAEVLVKIPN-PGNIKRNADGHFWV---SSSEELDGNM 254
Query: 276 KTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXXTLNSVSEVQEYGEYLYTGS 332
DP G+KF ++QE+ LY G+
Sbjct: 255 HGRV-----------DPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT 300
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 146/297 (49%), Gaps = 16/297 (5%)
Query: 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLC 95
P S FD +G Y V DGR++K++ NSG+ +FA +P+ + C+ ST+ PLC
Sbjct: 11 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLC 70
Query: 96 GRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI 155
GR I +N LYI D Y+ L VVG GG A QLA+S G+PF++ + +D TGI
Sbjct: 71 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI 130
Query: 156 VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXX 215
VYFTD S + R + T D++GRL+KYDP K T++ L P G
Sbjct: 131 VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFV 190
Query: 216 XXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNK 275
+ +I+++WL+G + T ++ ++P P NIK ++ G FW+ S+ +++ N
Sbjct: 191 LVAEFLSHQIVKYWLEGPKKG-TAEVLVKIPN-PGNIKRNADGHFWV---SSSEELDGNM 245
Query: 276 KTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXXTLNSVSEVQEYGEYLYTGS 332
DP G+KF ++QE+ LY G+
Sbjct: 246 HGRV-----------DPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT 291
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 142/297 (47%), Gaps = 16/297 (5%)
Query: 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLC 95
P S FD +G Y V DGR+ K++ NSG+ +FA +P+ + C+ ST+ PLC
Sbjct: 20 APNSFTFDSTNKGFYTSVQDGRVXKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLC 79
Query: 96 GRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI 155
GR I +N YI D Y+ L VVG GG A QLA+S G+PF++ + +D TGI
Sbjct: 80 GRTYDISYNLQNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI 139
Query: 156 VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXX 215
VYFTD S + R T D++GRL KYDP K T++ L P G
Sbjct: 140 VYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSADSSFV 199
Query: 216 XXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNK 275
+ +I+++WL+G + T ++ ++P P NIK ++ G FW+ S+ +++ N
Sbjct: 200 LVAEFLSHQIVKYWLEGPKKG-TAEVLVKIPN-PGNIKRNADGHFWV---SSSEELDGNX 254
Query: 276 KTAFCEETAKPWFLRDPVGVKFXXXXXXXXXXXXXXXXTLNSVSEVQEYGEYLYTGS 332
DP G+KF ++QE+ LY G+
Sbjct: 255 HGRV-----------DPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT 300
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 58/156 (37%), Gaps = 33/156 (21%)
Query: 33 GVVGPESLAFDCNGEGPY----------VGVSDGR---ILKWKAANSG------------ 67
G+ PE +A D G+ Y V DG+ +L WK +S
Sbjct: 83 GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFM 142
Query: 68 -WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNG 126
WTE+ P R DGS TTL P GR G+ + LY D L+
Sbjct: 143 YWTEWGG-KPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML 201
Query: 127 GQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS 162
G +++ + PF T D +Y+TD S
Sbjct: 202 GLNREVIADDLPHPFGLTQYQD------YIYWTDWS 231
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 58/156 (37%), Gaps = 33/156 (21%)
Query: 33 GVVGPESLAFDCNGEGPY----------VGVSDGR---ILKWKAANSG------------ 67
G+ PE +A D G+ Y V DG+ +L WK +S
Sbjct: 76 GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFM 135
Query: 68 -WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNG 126
WTE+ P R DGS TTL P GR G+ + LY D L+
Sbjct: 136 YWTEWGG-KPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML 194
Query: 127 GQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS 162
G +++ + PF T D +Y+TD S
Sbjct: 195 GLNREVIADDLPHPFGLTQYQD------YIYWTDWS 224
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 58/156 (37%), Gaps = 33/156 (21%)
Query: 33 GVVGPESLAFDCNGEGPY----------VGVSDGR---ILKWKAANSG------------ 67
G+ PE +A D G+ Y V DG+ +L WK +S
Sbjct: 78 GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFM 137
Query: 68 -WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNG 126
WTE+ P R DGS TTL P GR G+ + LY D L+
Sbjct: 138 YWTEWGG-KPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML 196
Query: 127 GQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS 162
G +++ + PF T D +Y+TD S
Sbjct: 197 GLNREVIADDLPHPFGLTQYQD------YIYWTDWS 226
>pdb|3I1C|A Chain A, Crystal Structure Of A Novel Engineered Diels-Alderase:
Da_20_00_a74i
Length = 324
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 65/172 (37%), Gaps = 35/172 (20%)
Query: 31 LPGVVGPESLAFDCNGE----GPYVGVSD---GRILKWKAANSGWTEFATTAPHRAREIC 83
+PG GP FD NG+ PYV V+ G IL+ + IC
Sbjct: 17 IPGAAGP---VFDKNGDFYIVAPYVEVNGKPAGEILRIDLKTG-----------KKTVIC 62
Query: 84 DGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGG----- 138
N G P+G + + L++AD GL+VV +G + + G
Sbjct: 63 KPEVNG----YGGIPIGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQG 118
Query: 139 ---IPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYD 187
F + +L I G V D +I Q + F SI G++++ D
Sbjct: 119 CAYCAFDYEGNLWITAPAGEVAPADFTISLQEK--FGSIYCFTTDGQMIQVD 168
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 55 DGRILKWKAANSGWTEFATTAPHRA 79
DG++L WK N W++ A A H A
Sbjct: 76 DGKVLIWKEENGRWSQIAVHAVHSA 100
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 55 DGRILKWKAANSGWTEFATTAPHRA 79
DG++L WK N W++ A A H A
Sbjct: 78 DGKVLIWKEENGRWSQIAVHAVHSA 102
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 55 DGRILKWKAANSGWTEFATTAPHRA 79
DG++L WK N W++ A A H A
Sbjct: 76 DGKVLIWKEENGRWSQIAVHAVHSA 100
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 55 DGRILKWKAANSGWTEFATTAPHRA 79
DG+++ WK N W++ A A H A
Sbjct: 76 DGKVMIWKEENGRWSQIAVHAVHSA 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,661,391
Number of Sequences: 62578
Number of extensions: 389515
Number of successful extensions: 706
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 13
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)