Query 019290
Match_columns 343
No_of_seqs 135 out of 1557
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:15:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 3.8E-34 8.3E-39 249.8 24.5 302 33-343 52-375 (376)
2 PF08450 SGL: SMP-30/Gluconola 100.0 1.4E-27 3.1E-32 207.8 24.4 236 37-334 2-246 (246)
3 COG3386 Gluconolactonase [Carb 99.9 8.1E-24 1.8E-28 186.7 27.7 251 33-337 23-279 (307)
4 COG4257 Vgb Streptogramin lyas 99.9 6.9E-23 1.5E-27 170.3 23.6 251 23-343 50-304 (353)
5 PLN02919 haloacid dehalogenase 99.8 2.4E-17 5.3E-22 168.3 33.3 263 34-343 567-887 (1057)
6 COG4257 Vgb Streptogramin lyas 99.8 1.1E-17 2.4E-22 139.5 23.2 247 24-342 93-345 (353)
7 PLN02919 haloacid dehalogenase 99.7 5.2E-14 1.1E-18 144.2 28.0 208 34-266 623-878 (1057)
8 KOG4499 Ca2+-binding protein R 99.7 5.2E-14 1.1E-18 115.1 21.6 237 38-334 18-275 (310)
9 PF10282 Lactonase: Lactonase, 99.6 1.2E-12 2.6E-17 119.5 27.5 252 33-342 35-320 (345)
10 PF08450 SGL: SMP-30/Gluconola 99.6 1.9E-13 4.1E-18 118.9 19.6 188 98-343 2-212 (246)
11 PRK11028 6-phosphogluconolacto 99.6 1E-11 2.3E-16 112.8 29.0 256 25-342 27-302 (330)
12 COG2706 3-carboxymuconate cycl 99.5 7.8E-11 1.7E-15 102.4 30.5 253 34-342 39-319 (346)
13 PF03088 Str_synth: Strictosid 99.4 2.9E-13 6.3E-18 96.2 7.3 88 145-232 1-88 (89)
14 PF10282 Lactonase: Lactonase, 99.4 1.2E-10 2.7E-15 106.3 25.6 214 33-271 85-316 (345)
15 TIGR02604 Piru_Ver_Nterm putat 99.4 1.6E-10 3.4E-15 106.4 26.1 172 32-229 11-211 (367)
16 COG2706 3-carboxymuconate cycl 99.4 6.6E-10 1.4E-14 96.7 26.7 234 25-304 80-328 (346)
17 PRK11028 6-phosphogluconolacto 99.3 1.1E-09 2.3E-14 99.6 25.9 193 36-265 81-293 (330)
18 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 9.4E-09 2E-13 91.4 30.2 237 36-343 32-278 (300)
19 PF03022 MRJP: Major royal jel 99.2 8.9E-09 1.9E-13 91.0 23.8 193 98-334 3-255 (287)
20 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 6.8E-08 1.5E-12 85.8 29.5 172 47-265 2-176 (300)
21 PF06977 SdiA-regulated: SdiA- 99.2 2E-08 4.3E-13 86.3 21.9 203 26-266 12-241 (248)
22 COG3386 Gluconolactonase [Carb 99.1 4.8E-09 1E-13 93.1 18.1 151 34-224 110-279 (307)
23 COG3292 Predicted periplasmic 99.1 2.1E-09 4.5E-14 98.8 16.0 227 35-335 165-439 (671)
24 KOG4659 Uncharacterized conser 99.1 2.8E-08 6E-13 98.6 22.4 205 35-266 407-681 (1899)
25 PF07995 GSDH: Glucose / Sorbo 99.1 2.3E-08 5E-13 90.6 19.4 168 35-221 2-201 (331)
26 COG3391 Uncharacterized conser 99.1 3.8E-07 8.2E-12 84.4 27.8 245 36-342 32-281 (381)
27 KOG1214 Nidogen and related ba 99.0 2.5E-08 5.4E-13 95.0 16.7 194 27-266 1018-1216(1289)
28 COG3292 Predicted periplasmic 98.9 4.8E-08 1E-12 90.0 15.6 107 37-167 208-314 (671)
29 COG3391 Uncharacterized conser 98.9 1.2E-06 2.6E-11 81.1 24.8 187 35-266 74-272 (381)
30 TIGR02658 TTQ_MADH_Hv methylam 98.9 1.1E-05 2.5E-10 72.8 29.3 256 23-343 37-329 (352)
31 cd00200 WD40 WD40 domain, foun 98.9 7.3E-06 1.6E-10 71.1 27.9 230 38-342 55-289 (289)
32 PRK04792 tolB translocation pr 98.8 3.8E-06 8.2E-11 79.5 26.2 206 38-311 221-436 (448)
33 KOG1446 Histone H3 (Lys4) meth 98.8 2.1E-05 4.5E-10 67.7 27.5 238 36-342 16-260 (311)
34 TIGR02604 Piru_Ver_Nterm putat 98.8 2.5E-07 5.4E-12 85.2 17.1 141 94-266 12-203 (367)
35 PRK02889 tolB translocation pr 98.8 8.1E-06 1.8E-10 76.9 26.4 207 38-312 199-415 (427)
36 cd00200 WD40 WD40 domain, foun 98.8 3.1E-05 6.8E-10 67.1 28.7 185 36-265 11-197 (289)
37 PRK04922 tolB translocation pr 98.8 6.2E-06 1.3E-10 77.9 25.6 206 37-310 206-421 (433)
38 PRK05137 tolB translocation pr 98.8 1.4E-05 3E-10 75.6 28.0 139 98-261 204-348 (435)
39 PF02239 Cytochrom_D1: Cytochr 98.8 2.7E-06 5.8E-11 78.1 21.6 171 23-232 26-203 (369)
40 KOG4659 Uncharacterized conser 98.8 4.1E-06 9E-11 83.8 23.5 239 36-339 366-686 (1899)
41 KOG1214 Nidogen and related ba 98.7 1.3E-06 2.9E-11 83.6 19.4 193 97-342 1026-1224(1289)
42 PRK00178 tolB translocation pr 98.7 1.7E-05 3.6E-10 74.9 27.3 208 38-312 202-418 (430)
43 PRK03629 tolB translocation pr 98.7 1.8E-05 3.8E-10 74.6 26.7 206 37-309 201-415 (429)
44 PRK05137 tolB translocation pr 98.7 2.1E-05 4.6E-10 74.3 26.2 207 37-308 204-420 (435)
45 PF03022 MRJP: Major royal jel 98.7 1E-05 2.2E-10 71.7 21.4 199 36-266 2-255 (287)
46 KOG0315 G-protein beta subunit 98.6 5.1E-05 1.1E-09 63.5 23.1 197 26-266 33-235 (311)
47 PRK03629 tolB translocation pr 98.6 0.00015 3.3E-09 68.3 29.0 141 98-263 201-347 (429)
48 PF06977 SdiA-regulated: SdiA- 98.6 3.4E-05 7.4E-10 66.4 22.3 199 97-342 23-248 (248)
49 KOG0291 WD40-repeat-containing 98.6 3.9E-05 8.5E-10 73.2 24.2 185 36-266 352-541 (893)
50 TIGR02800 propeller_TolB tol-p 98.6 7.3E-05 1.6E-09 70.2 26.6 206 38-311 193-408 (417)
51 TIGR02658 TTQ_MADH_Hv methylam 98.6 0.00011 2.4E-09 66.5 26.2 216 22-307 86-338 (352)
52 PRK04043 tolB translocation pr 98.6 0.00017 3.7E-09 67.5 28.1 204 39-312 192-412 (419)
53 PRK04792 tolB translocation pr 98.6 0.00015 3.3E-09 68.7 27.7 139 100-263 222-366 (448)
54 KOG0315 G-protein beta subunit 98.6 4.6E-05 1E-09 63.7 20.8 183 36-266 85-278 (311)
55 COG3204 Uncharacterized protei 98.6 3.8E-05 8.2E-10 66.0 20.9 193 36-266 87-303 (316)
56 PRK04922 tolB translocation pr 98.5 0.00013 2.9E-09 68.9 27.0 138 99-261 207-350 (433)
57 PF02239 Cytochrom_D1: Cytochr 98.5 0.00015 3.2E-09 66.8 26.1 175 46-266 5-191 (369)
58 PRK02889 tolB translocation pr 98.5 0.00023 5.1E-09 67.0 27.6 138 99-261 199-342 (427)
59 PRK00178 tolB translocation pr 98.5 0.0003 6.6E-09 66.4 28.4 138 99-261 202-345 (430)
60 TIGR03606 non_repeat_PQQ dehyd 98.5 2.4E-05 5.2E-10 72.9 19.7 183 32-229 27-260 (454)
61 PRK01742 tolB translocation pr 98.5 0.0001 2.2E-09 69.5 24.3 202 37-310 206-414 (429)
62 PF05096 Glu_cyclase_2: Glutam 98.5 2.9E-05 6.4E-10 66.6 18.3 164 24-231 79-261 (264)
63 COG2133 Glucose/sorbosone dehy 98.4 0.00015 3.2E-09 66.2 23.1 184 33-222 65-260 (399)
64 TIGR02800 propeller_TolB tol-p 98.4 0.00054 1.2E-08 64.3 27.8 142 99-265 193-340 (417)
65 KOG0318 WD40 repeat stress pro 98.3 0.0015 3.1E-08 60.4 26.1 186 36-266 322-507 (603)
66 PF05096 Glu_cyclase_2: Glutam 98.3 0.00063 1.4E-08 58.5 22.7 191 99-342 48-259 (264)
67 KOG1446 Histone H3 (Lys4) meth 98.3 0.0018 3.9E-08 56.0 26.5 218 23-310 46-273 (311)
68 PRK11138 outer membrane biogen 98.3 0.0017 3.7E-08 60.6 27.0 220 47-342 161-392 (394)
69 PF07433 DUF1513: Protein of u 98.3 0.00025 5.5E-09 62.2 19.7 177 26-232 41-248 (305)
70 PF01731 Arylesterase: Arylest 98.3 6E-06 1.3E-10 58.5 7.9 82 145-231 1-84 (86)
71 COG4946 Uncharacterized protei 98.2 0.00065 1.4E-08 61.9 21.6 153 44-232 276-432 (668)
72 KOG0266 WD40 repeat-containing 98.2 0.0011 2.4E-08 63.1 24.5 153 36-232 205-365 (456)
73 PRK01029 tolB translocation pr 98.2 0.0027 5.7E-08 59.9 26.0 183 38-264 188-389 (428)
74 PF14583 Pectate_lyase22: Olig 98.2 0.00038 8.1E-09 63.0 19.1 171 40-232 41-225 (386)
75 PRK04043 tolB translocation pr 98.2 0.006 1.3E-07 57.3 27.9 136 100-262 192-334 (419)
76 TIGR03300 assembly_YfgL outer 98.1 0.002 4.4E-08 59.6 24.5 23 46-68 65-87 (377)
77 KOG0279 G protein beta subunit 98.1 0.0035 7.6E-08 53.5 23.0 190 98-342 66-260 (315)
78 TIGR03300 assembly_YfgL outer 98.1 0.0017 3.8E-08 60.1 23.9 173 107-335 190-371 (377)
79 PLN00181 protein SPA1-RELATED; 98.1 0.0069 1.5E-07 61.8 30.0 161 37-232 486-649 (793)
80 PF13360 PQQ_2: PQQ-like domai 98.1 0.0025 5.3E-08 54.7 23.2 174 41-264 32-219 (238)
81 PTZ00421 coronin; Provisional 98.1 0.0074 1.6E-07 57.7 27.9 162 37-232 78-246 (493)
82 PRK01742 tolB translocation pr 98.1 0.0039 8.5E-08 58.8 26.0 114 98-232 206-325 (429)
83 TIGR03606 non_repeat_PQQ dehyd 98.1 0.00053 1.1E-08 64.1 19.2 107 142-266 30-165 (454)
84 PRK11138 outer membrane biogen 98.1 0.0031 6.8E-08 58.8 24.7 176 107-342 160-351 (394)
85 KOG1520 Predicted alkaloid syn 98.1 0.00019 4.2E-09 64.2 15.5 101 142-265 115-237 (376)
86 KOG0279 G protein beta subunit 98.1 0.0051 1.1E-07 52.6 23.8 184 37-266 66-252 (315)
87 KOG2055 WD40 repeat protein [G 98.1 0.0037 7.9E-08 56.9 23.2 213 30-286 209-427 (514)
88 COG3204 Uncharacterized protei 98.1 0.0006 1.3E-08 58.8 17.2 176 23-231 117-312 (316)
89 KOG0266 WD40 repeat-containing 98.1 0.0046 9.9E-08 58.8 25.3 189 36-266 161-354 (456)
90 KOG0291 WD40-repeat-containing 98.0 0.0067 1.4E-07 58.5 25.2 190 98-340 310-504 (893)
91 KOG0318 WD40 repeat stress pro 98.0 0.013 2.7E-07 54.4 26.9 198 36-271 192-430 (603)
92 KOG0263 Transcription initiati 98.0 0.0011 2.5E-08 63.6 19.6 253 36-342 380-647 (707)
93 KOG0282 mRNA splicing factor [ 98.0 0.00019 4.2E-09 65.2 13.7 188 36-266 260-452 (503)
94 KOG4499 Ca2+-binding protein R 98.0 0.0004 8.6E-09 57.9 14.4 143 37-219 111-273 (310)
95 KOG0286 G-protein beta subunit 98.0 0.0086 1.9E-07 51.6 26.3 239 34-342 55-301 (343)
96 KOG0286 G-protein beta subunit 98.0 0.0087 1.9E-07 51.5 23.7 228 36-333 99-334 (343)
97 KOG2106 Uncharacterized conser 98.0 0.0081 1.7E-07 55.4 23.2 149 36-229 248-396 (626)
98 PF13360 PQQ_2: PQQ-like domai 97.9 0.0099 2.2E-07 50.9 27.1 180 107-343 36-229 (238)
99 COG4946 Uncharacterized protei 97.9 0.0012 2.6E-08 60.3 16.9 139 44-220 369-508 (668)
100 PF07433 DUF1513: Protein of u 97.9 0.013 2.7E-07 51.7 22.7 106 96-219 5-117 (305)
101 PHA02713 hypothetical protein; 97.9 0.0089 1.9E-07 58.3 24.1 221 57-342 273-531 (557)
102 PLN00181 protein SPA1-RELATED; 97.9 0.044 9.6E-07 56.0 30.7 187 37-266 535-728 (793)
103 KOG0275 Conserved WD40 repeat- 97.9 0.0014 3.1E-08 56.9 16.1 223 26-310 205-433 (508)
104 KOG1273 WD40 repeat protein [G 97.8 0.012 2.5E-07 51.3 20.9 213 37-312 68-293 (405)
105 PRK13684 Ycf48-like protein; P 97.8 0.013 2.9E-07 53.2 22.8 196 24-266 35-234 (334)
106 TIGR03032 conserved hypothetic 97.8 0.0047 1E-07 54.2 18.5 151 97-266 104-261 (335)
107 KOG0271 Notchless-like WD40 re 97.8 0.0081 1.7E-07 53.6 20.0 101 37-160 160-265 (480)
108 KOG1539 WD repeat protein [Gen 97.8 0.0026 5.6E-08 61.8 18.1 188 36-269 450-640 (910)
109 KOG4328 WD40 protein [Function 97.8 0.0043 9.4E-08 56.4 18.4 242 37-341 237-492 (498)
110 KOG0285 Pleiotropic regulator 97.8 0.007 1.5E-07 53.5 19.0 183 36-264 153-337 (460)
111 PTZ00420 coronin; Provisional 97.8 0.047 1E-06 53.0 26.7 161 36-232 76-249 (568)
112 PF07995 GSDH: Glucose / Sorbo 97.7 0.0016 3.4E-08 59.2 15.5 157 97-266 3-201 (331)
113 PRK01029 tolB translocation pr 97.7 0.045 9.7E-07 51.6 26.5 120 118-260 212-340 (428)
114 KOG0296 Angio-associated migra 97.7 0.036 7.9E-07 49.2 21.6 234 35-342 149-396 (399)
115 KOG0282 mRNA splicing factor [ 97.7 0.0022 4.8E-08 58.5 14.6 182 37-266 217-405 (503)
116 KOG4441 Proteins containing BT 97.6 0.02 4.3E-07 55.9 21.9 214 56-332 301-529 (571)
117 PF03088 Str_synth: Strictosid 97.6 0.00044 9.6E-09 49.3 7.7 67 39-125 2-87 (89)
118 KOG2321 WD40 repeat protein [G 97.6 0.01 2.3E-07 55.5 18.3 180 26-232 45-259 (703)
119 cd00216 PQQ_DH Dehydrogenases 97.6 0.042 9.1E-07 52.8 23.3 42 292-335 416-458 (488)
120 KOG2048 WD40 repeat protein [G 97.6 0.03 6.4E-07 53.5 21.1 174 23-231 371-548 (691)
121 PRK02888 nitrous-oxide reducta 97.5 0.019 4E-07 55.5 20.1 227 29-266 122-394 (635)
122 KOG4441 Proteins containing BT 97.5 0.02 4.3E-07 55.9 20.8 191 56-308 349-555 (571)
123 KOG0278 Serine/threonine kinas 97.5 0.0042 9.1E-08 52.3 13.7 180 37-266 103-287 (334)
124 KOG1274 WD40 repeat protein [G 97.5 0.083 1.8E-06 52.3 24.4 152 37-232 16-169 (933)
125 PTZ00421 coronin; Provisional 97.5 0.093 2E-06 50.3 25.9 159 37-232 128-291 (493)
126 PF08662 eIF2A: Eukaryotic tra 97.5 0.034 7.4E-07 46.3 19.1 113 97-232 61-180 (194)
127 KOG2055 WD40 repeat protein [G 97.5 0.021 4.6E-07 52.1 18.1 196 96-342 214-415 (514)
128 KOG2048 WD40 repeat protein [G 97.4 0.12 2.6E-06 49.6 25.5 194 27-266 62-266 (691)
129 KOG0772 Uncharacterized conser 97.4 0.02 4.3E-07 53.1 17.5 205 28-266 160-384 (641)
130 KOG0289 mRNA splicing factor [ 97.4 0.097 2.1E-06 47.6 22.7 144 98-266 306-452 (506)
131 KOG0289 mRNA splicing factor [ 97.4 0.095 2.1E-06 47.7 21.1 102 143-266 305-409 (506)
132 KOG0293 WD40 repeat-containing 97.3 0.035 7.6E-07 50.1 17.8 186 36-266 226-415 (519)
133 KOG0278 Serine/threonine kinas 97.3 0.032 6.9E-07 47.2 16.4 149 38-231 147-297 (334)
134 KOG0316 Conserved WD40 repeat- 97.3 0.076 1.6E-06 44.6 18.9 178 37-266 20-203 (307)
135 PF14870 PSII_BNR: Photosynthe 97.3 0.11 2.3E-06 46.3 22.6 200 22-266 4-206 (302)
136 KOG0272 U4/U6 small nuclear ri 97.3 0.032 6.9E-07 50.4 17.2 227 37-338 220-454 (459)
137 KOG0310 Conserved WD40 repeat- 97.3 0.078 1.7E-06 48.8 19.9 155 36-232 70-226 (487)
138 KOG0319 WD40-repeat-containing 97.3 0.042 9.1E-07 53.1 18.9 183 40-264 25-210 (775)
139 KOG0646 WD40 repeat protein [G 97.3 0.039 8.4E-07 50.5 17.7 160 29-231 78-247 (476)
140 KOG2106 Uncharacterized conser 97.3 0.16 3.4E-06 47.2 22.7 227 36-340 289-517 (626)
141 COG3823 Glutamine cyclotransfe 97.3 0.0096 2.1E-07 49.0 12.4 110 97-227 132-255 (262)
142 TIGR03118 PEPCTERM_chp_1 conse 97.3 0.11 2.5E-06 45.4 23.0 228 92-343 19-278 (336)
143 KOG0772 Uncharacterized conser 97.2 0.14 3E-06 47.7 20.6 268 23-343 203-487 (641)
144 KOG0263 Transcription initiati 97.2 0.045 9.8E-07 53.1 18.1 180 37-266 454-639 (707)
145 PRK02888 nitrous-oxide reducta 97.2 0.029 6.4E-07 54.1 16.9 159 23-232 225-405 (635)
146 KOG0640 mRNA cleavage stimulat 97.2 0.049 1.1E-06 47.5 16.5 154 37-232 175-336 (430)
147 KOG0272 U4/U6 small nuclear ri 97.2 0.014 3.1E-07 52.6 13.5 186 36-265 263-449 (459)
148 PF02333 Phytase: Phytase; In 97.2 0.14 3.1E-06 46.8 20.3 136 181-342 129-288 (381)
149 cd00216 PQQ_DH Dehydrogenases 97.2 0.26 5.6E-06 47.4 25.7 260 47-342 111-422 (488)
150 PF05787 DUF839: Bacterial pro 97.1 0.008 1.7E-07 57.8 12.9 124 94-219 348-520 (524)
151 TIGR03032 conserved hypothetic 97.1 0.067 1.4E-06 47.2 17.0 93 98-219 154-259 (335)
152 PF02333 Phytase: Phytase; In 97.1 0.1 2.2E-06 47.7 18.7 157 44-233 66-239 (381)
153 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.1 0.33 7.1E-06 47.1 27.9 36 100-135 238-289 (527)
154 KOG0643 Translation initiation 97.0 0.051 1.1E-06 46.4 14.8 164 26-231 140-317 (327)
155 KOG0275 Conserved WD40 repeat- 97.0 0.025 5.4E-07 49.4 13.3 203 36-308 265-476 (508)
156 KOG0293 WD40 repeat-containing 97.0 0.02 4.4E-07 51.6 13.0 156 35-232 313-471 (519)
157 PTZ00420 coronin; Provisional 97.0 0.11 2.4E-06 50.5 18.9 104 142-266 75-187 (568)
158 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.0 0.28 6E-06 47.6 21.8 123 46-193 69-193 (527)
159 COG3823 Glutamine cyclotransfe 97.0 0.097 2.1E-06 43.2 15.5 190 23-265 34-248 (262)
160 KOG1539 WD repeat protein [Gen 97.0 0.024 5.3E-07 55.4 13.9 152 36-229 495-646 (910)
161 KOG1407 WD40 repeat protein [F 97.0 0.2 4.4E-06 42.7 20.4 184 34-264 20-207 (313)
162 KOG0294 WD40 repeat-containing 96.9 0.24 5.1E-06 43.4 21.4 173 45-266 52-228 (362)
163 COG3490 Uncharacterized protei 96.9 0.04 8.7E-07 47.6 13.3 81 140-232 224-311 (366)
164 COG3211 PhoX Predicted phospha 96.9 0.014 3.1E-07 55.0 11.3 120 95-221 416-574 (616)
165 TIGR03118 PEPCTERM_chp_1 conse 96.9 0.28 6.2E-06 43.1 25.7 247 26-336 14-325 (336)
166 KOG1274 WD40 repeat protein [G 96.9 0.077 1.7E-06 52.6 16.5 156 38-232 100-263 (933)
167 COG0823 TolB Periplasmic compo 96.8 0.36 7.8E-06 45.4 20.5 135 57-231 219-358 (425)
168 PF13449 Phytase-like: Esteras 96.8 0.16 3.5E-06 46.0 17.9 186 36-231 21-251 (326)
169 KOG0283 WD40 repeat-containing 96.8 0.23 5E-06 48.6 19.1 181 38-266 373-566 (712)
170 PHA03098 kelch-like protein; P 96.8 0.32 6.8E-06 47.4 20.8 189 57-307 312-518 (534)
171 PHA02790 Kelch-like protein; P 96.7 0.46 1E-05 45.6 21.1 160 57-266 288-455 (480)
172 KOG0639 Transducin-like enhanc 96.7 0.13 2.7E-06 47.9 15.5 228 37-342 468-702 (705)
173 PHA02713 hypothetical protein; 96.6 0.47 1E-05 46.4 20.3 198 118-343 273-487 (557)
174 PF05694 SBP56: 56kDa selenium 96.6 0.28 6E-06 45.4 17.1 221 33-299 128-418 (461)
175 PF13449 Phytase-like: Esteras 96.6 0.26 5.5E-06 44.7 17.2 110 143-266 86-234 (326)
176 PF05787 DUF839: Bacterial pro 96.5 0.036 7.7E-07 53.4 11.8 69 199-267 348-456 (524)
177 smart00135 LY Low-density lipo 96.5 0.013 2.8E-07 35.3 5.9 36 197-232 5-40 (43)
178 PF01436 NHL: NHL repeat; Int 96.5 0.0071 1.5E-07 33.0 4.0 27 201-228 2-28 (28)
179 KOG0640 mRNA cleavage stimulat 96.4 0.13 2.8E-06 44.9 13.3 123 194-342 166-289 (430)
180 PF08662 eIF2A: Eukaryotic tra 96.4 0.45 9.7E-06 39.6 17.3 121 117-266 39-163 (194)
181 KOG0646 WD40 repeat protein [G 96.4 0.76 1.7E-05 42.3 18.5 205 98-342 84-305 (476)
182 PF06433 Me-amine-dh_H: Methyl 96.4 0.71 1.5E-05 41.5 23.5 248 38-343 39-319 (342)
183 KOG4649 PQQ (pyrrolo-quinoline 96.4 0.56 1.2E-05 40.3 20.5 74 40-132 99-172 (354)
184 KOG0316 Conserved WD40 repeat- 96.4 0.51 1.1E-05 39.8 17.4 150 39-232 64-214 (307)
185 COG2133 Glucose/sorbosone dehy 96.4 0.27 5.8E-06 45.3 15.8 49 182-231 343-397 (399)
186 KOG0299 U3 snoRNP-associated p 96.4 0.83 1.8E-05 42.1 19.9 202 36-265 144-346 (479)
187 PHA02790 Kelch-like protein; P 96.3 1 2.3E-05 43.1 22.1 181 107-343 271-469 (480)
188 KOG0308 Conserved WD40 repeat- 96.3 0.37 8E-06 46.2 16.5 196 36-266 119-318 (735)
189 KOG0268 Sof1-like rRNA process 96.3 0.18 3.9E-06 45.0 13.6 179 36-266 68-249 (433)
190 KOG1273 WD40 repeat protein [G 96.2 0.76 1.7E-05 40.4 17.8 190 98-342 26-224 (405)
191 KOG0319 WD40-repeat-containing 96.2 0.57 1.2E-05 45.6 17.6 155 37-232 65-223 (775)
192 KOG0643 Translation initiation 96.2 0.69 1.5E-05 39.8 22.1 187 39-266 15-210 (327)
193 PHA03098 kelch-like protein; P 96.2 1.4 3E-05 42.9 22.5 194 107-343 294-510 (534)
194 KOG0285 Pleiotropic regulator 96.2 0.73 1.6E-05 41.2 16.7 155 34-232 235-390 (460)
195 PF01436 NHL: NHL repeat; Int 96.1 0.0092 2E-07 32.5 3.3 27 35-61 2-28 (28)
196 KOG0265 U5 snRNP-specific prot 96.1 0.89 1.9E-05 39.7 17.4 184 37-266 50-236 (338)
197 PF06433 Me-amine-dh_H: Methyl 96.0 0.36 7.8E-06 43.3 14.3 127 42-200 191-331 (342)
198 KOG0284 Polyadenylation factor 95.9 0.15 3.4E-06 46.0 11.7 184 37-266 99-284 (464)
199 KOG0303 Actin-binding protein 95.9 0.47 1E-05 42.9 14.5 145 49-232 147-295 (472)
200 KOG0271 Notchless-like WD40 re 95.9 0.25 5.4E-06 44.4 12.8 140 46-228 336-477 (480)
201 KOG0292 Vesicle coat complex C 95.9 2.3 5E-05 42.7 21.7 153 36-232 11-166 (1202)
202 KOG2919 Guanine nucleotide-bin 95.8 0.45 9.7E-06 42.0 13.6 117 97-232 160-282 (406)
203 KOG0310 Conserved WD40 repeat- 95.8 1.6 3.6E-05 40.4 19.9 166 25-232 13-185 (487)
204 PF14583 Pectate_lyase22: Olig 95.8 1.6 3.4E-05 40.1 22.2 185 39-266 85-302 (386)
205 KOG0288 WD40 repeat protein Ti 95.7 0.66 1.4E-05 42.2 14.9 135 46-218 312-449 (459)
206 KOG1407 WD40 repeat protein [F 95.7 1.2 2.5E-05 38.3 19.7 181 36-264 66-249 (313)
207 PF00930 DPPIV_N: Dipeptidyl p 95.7 1 2.2E-05 41.3 16.7 145 100-266 188-347 (353)
208 KOG0299 U3 snoRNP-associated p 95.6 1.9 4.1E-05 39.8 19.4 151 39-232 207-357 (479)
209 KOG0301 Phospholipase A2-activ 95.6 2.5 5.4E-05 41.1 19.7 175 40-266 64-239 (745)
210 KOG0276 Vesicle coat complex C 95.5 1.8 4E-05 41.6 17.6 166 27-232 49-216 (794)
211 COG1520 FOG: WD40-like repeat 95.5 2 4.3E-05 39.7 22.4 144 42-231 65-217 (370)
212 KOG0639 Transducin-like enhanc 95.5 1.7 3.7E-05 40.7 16.9 116 96-232 466-582 (705)
213 KOG4649 PQQ (pyrrolo-quinoline 95.5 1.5 3.2E-05 37.8 20.3 151 36-232 14-166 (354)
214 KOG0306 WD40-repeat-containing 95.4 3 6.4E-05 41.1 20.5 110 23-160 361-472 (888)
215 KOG0313 Microtubule binding pr 95.4 1.3 2.7E-05 40.0 15.1 173 36-232 195-377 (423)
216 KOG4378 Nuclear protein COP1 [ 95.3 2.4 5.2E-05 39.7 17.0 130 180-342 142-278 (673)
217 KOG2139 WD40 repeat protein [G 95.3 2.1 4.6E-05 38.4 17.4 189 37-266 101-301 (445)
218 PRK13684 Ycf48-like protein; P 95.2 2.3 5E-05 38.7 26.0 188 98-342 134-329 (334)
219 KOG0649 WD40 repeat protein [G 95.2 1.7 3.6E-05 37.0 17.8 111 97-232 116-236 (325)
220 KOG2110 Uncharacterized conser 95.2 2.2 4.8E-05 38.3 17.0 91 119-232 155-249 (391)
221 PLN00033 photosystem II stabil 95.1 2.8 6.2E-05 39.0 26.1 131 180-341 258-396 (398)
222 KOG4378 Nuclear protein COP1 [ 95.1 1.8 3.8E-05 40.6 15.5 112 99-232 168-281 (673)
223 KOG0649 WD40 repeat protein [G 95.0 1.9 4.2E-05 36.7 21.4 74 140-233 113-188 (325)
224 KOG0296 Angio-associated migra 95.0 2.5 5.5E-05 37.9 23.0 153 37-232 67-221 (399)
225 KOG0273 Beta-transducin family 95.0 3 6.6E-05 38.7 25.0 152 35-231 236-389 (524)
226 KOG2139 WD40 repeat protein [G 95.0 2.7 5.8E-05 37.9 23.9 145 98-266 198-365 (445)
227 KOG0265 U5 snRNP-specific prot 94.9 2.5 5.4E-05 37.1 17.3 116 95-232 47-164 (338)
228 KOG0645 WD40 repeat protein [G 94.9 2.3 5E-05 36.7 18.1 156 36-229 63-223 (312)
229 KOG0288 WD40 repeat protein Ti 94.8 2.2 4.9E-05 38.9 15.3 102 180-310 321-428 (459)
230 KOG0268 Sof1-like rRNA process 94.6 1.3 2.8E-05 39.8 13.1 51 180-231 209-259 (433)
231 KOG2321 WD40 repeat protein [G 94.6 1.3 2.7E-05 42.2 13.5 161 37-230 178-342 (703)
232 COG3211 PhoX Predicted phospha 94.5 0.68 1.5E-05 44.1 11.8 124 33-162 415-574 (616)
233 PRK14131 N-acetylneuraminic ac 94.5 4 8.7E-05 37.8 22.8 39 181-219 189-228 (376)
234 KOG0264 Nucleosome remodeling 94.5 1 2.2E-05 41.3 12.4 162 37-232 180-348 (422)
235 COG3490 Uncharacterized protei 94.3 3.3 7.2E-05 36.2 18.4 111 97-228 69-186 (366)
236 KOG0973 Histone transcription 94.2 4.1 9E-05 41.5 17.1 105 36-161 131-238 (942)
237 KOG0641 WD40 repeat protein [G 94.2 2.9 6.3E-05 35.1 15.9 74 142-234 232-306 (350)
238 KOG0281 Beta-TrCP (transducin 94.1 0.76 1.6E-05 40.9 10.6 187 25-266 186-378 (499)
239 TIGR02276 beta_rpt_yvtn 40-res 94.1 0.24 5.2E-06 29.4 5.6 42 210-255 1-42 (42)
240 PF07494 Reg_prop: Two compone 94.1 0.056 1.2E-06 28.2 2.3 17 249-265 7-23 (24)
241 KOG0313 Microtubule binding pr 94.1 2.8 6.1E-05 37.9 14.0 102 37-162 263-366 (423)
242 KOG0292 Vesicle coat complex C 94.0 7.7 0.00017 39.3 22.3 202 36-266 53-270 (1202)
243 KOG3881 Uncharacterized conser 94.0 1.4 3.1E-05 39.8 12.1 101 37-160 205-308 (412)
244 PF00058 Ldl_recept_b: Low-den 93.9 0.17 3.8E-06 30.4 4.5 39 214-256 2-42 (42)
245 KOG0307 Vesicle coat complex C 93.8 1.1 2.3E-05 45.8 12.3 157 38-230 68-239 (1049)
246 PF08553 VID27: VID27 cytoplas 93.7 7.2 0.00016 39.6 17.9 143 97-266 482-638 (794)
247 KOG1272 WD40-repeat-containing 93.7 1.1 2.3E-05 41.6 11.1 187 28-266 124-313 (545)
248 PF00930 DPPIV_N: Dipeptidyl p 93.7 5.4 0.00012 36.5 19.2 93 108-219 249-346 (353)
249 PF14870 PSII_BNR: Photosynthe 93.7 4.9 0.00011 35.9 26.8 181 39-266 66-252 (302)
250 smart00284 OLF Olfactomedin-li 93.7 4.3 9.4E-05 35.2 19.4 171 27-230 66-251 (255)
251 KOG1036 Mitotic spindle checkp 93.7 4.6 0.0001 35.5 18.1 149 36-232 15-164 (323)
252 KOG0771 Prolactin regulatory e 93.6 3.4 7.3E-05 37.7 13.9 185 38-263 148-341 (398)
253 KOG0650 WD40 repeat nucleolar 93.6 7.3 0.00016 37.5 16.7 82 180-266 545-628 (733)
254 PF14269 Arylsulfotran_2: Aryl 93.5 5.3 0.00012 35.7 21.3 37 142-196 144-180 (299)
255 KOG0284 Polyadenylation factor 93.5 2.2 4.7E-05 38.9 12.4 155 36-232 182-338 (464)
256 PF02191 OLF: Olfactomedin-lik 93.4 4.8 0.0001 34.9 18.3 156 45-230 78-246 (250)
257 KOG0283 WD40 repeat-containing 93.4 3.1 6.7E-05 41.1 14.2 131 182-342 391-530 (712)
258 KOG0273 Beta-transducin family 93.2 7.1 0.00015 36.4 21.7 98 38-162 280-379 (524)
259 KOG4227 WD40 repeat protein [G 93.2 6.6 0.00014 35.8 19.0 163 36-232 58-226 (609)
260 PF00058 Ldl_recept_b: Low-den 93.1 0.66 1.4E-05 27.9 6.2 40 154-210 1-42 (42)
261 KOG1538 Uncharacterized conser 93.1 9.5 0.00021 37.3 24.2 42 25-67 3-44 (1081)
262 KOG1215 Low-density lipoprotei 92.8 12 0.00026 39.0 18.7 190 98-338 439-633 (877)
263 PLN02153 epithiospecifier prot 92.8 7.5 0.00016 35.3 23.2 117 57-197 51-175 (341)
264 COG0823 TolB Periplasmic compo 92.6 2.9 6.3E-05 39.3 12.8 102 181-308 218-322 (425)
265 KOG0306 WD40-repeat-containing 92.5 9.9 0.00021 37.7 16.0 164 23-231 499-664 (888)
266 KOG0281 Beta-TrCP (transducin 92.3 2.6 5.7E-05 37.6 11.1 151 38-232 239-389 (499)
267 PF03178 CPSF_A: CPSF A subuni 92.2 8.4 0.00018 34.7 15.5 165 25-232 14-203 (321)
268 PF08553 VID27: VID27 cytoplas 92.2 6.2 0.00013 40.0 15.0 154 36-230 482-646 (794)
269 PF07494 Reg_prop: Two compone 92.2 0.24 5.1E-06 25.8 2.9 20 141-161 4-23 (24)
270 COG4247 Phy 3-phytase (myo-ino 92.2 7 0.00015 33.7 19.0 84 182-266 127-225 (364)
271 KOG0973 Histone transcription 92.0 4.4 9.6E-05 41.3 13.7 117 36-162 71-191 (942)
272 PLN00033 photosystem II stabil 91.7 11 0.00025 35.1 26.6 93 23-132 74-171 (398)
273 KOG2110 Uncharacterized conser 91.7 9.9 0.00021 34.4 15.4 153 100-275 92-247 (391)
274 TIGR02276 beta_rpt_yvtn 40-res 91.4 1.2 2.5E-05 26.3 5.9 39 154-209 4-42 (42)
275 COG1520 FOG: WD40-like repeat 91.4 12 0.00025 34.6 25.1 111 45-193 111-221 (370)
276 KOG1036 Mitotic spindle checkp 91.4 9.6 0.00021 33.6 17.6 109 98-231 16-124 (323)
277 KOG0308 Conserved WD40 repeat- 91.3 5.6 0.00012 38.6 12.8 161 37-233 76-245 (735)
278 PF01731 Arylesterase: Arylest 91.3 1.2 2.7E-05 31.5 6.6 33 93-125 51-84 (86)
279 KOG0302 Ribosome Assembly prot 91.2 5.5 0.00012 36.1 12.0 159 37-232 214-379 (440)
280 KOG0321 WD40 repeat-containing 91.2 15 0.00033 35.6 17.5 73 45-131 63-136 (720)
281 KOG0305 Anaphase promoting com 91.2 14 0.00031 35.2 15.4 157 36-232 303-462 (484)
282 KOG1215 Low-density lipoprotei 91.1 17 0.00036 37.9 17.5 188 29-258 431-622 (877)
283 PF05935 Arylsulfotrans: Aryls 90.9 9 0.00019 36.8 14.3 80 99-197 193-309 (477)
284 PF09910 DUF2139: Uncharacteri 90.6 11 0.00025 33.2 19.9 75 110-198 71-148 (339)
285 COG5276 Uncharacterized conser 90.6 12 0.00025 33.2 22.3 146 97-271 130-281 (370)
286 KOG2394 WD40 protein DMR-N9 [G 90.6 16 0.00035 34.8 15.2 60 202-265 292-351 (636)
287 PLN02153 epithiospecifier prot 90.5 13 0.00029 33.7 23.9 83 99-197 26-117 (341)
288 KOG0269 WD40 repeat-containing 90.3 6.3 0.00014 39.0 12.4 148 99-266 43-197 (839)
289 KOG1963 WD40 repeat protein [G 90.3 13 0.00028 37.2 14.7 100 38-159 209-309 (792)
290 KOG2096 WD40 repeat protein [G 90.3 13 0.00028 33.1 18.5 160 37-230 89-257 (420)
291 KOG1445 Tumor-specific antigen 90.2 5 0.00011 38.9 11.4 150 37-220 630-784 (1012)
292 KOG2919 Guanine nucleotide-bin 90.1 13 0.00029 33.1 14.8 171 36-232 51-239 (406)
293 KOG0322 G-protein beta subunit 89.8 5 0.00011 34.6 10.1 70 142-230 252-322 (323)
294 KOG0276 Vesicle coat complex C 89.4 22 0.00048 34.6 15.2 101 36-160 15-115 (794)
295 PF05694 SBP56: 56kDa selenium 89.3 19 0.00041 33.8 17.6 225 23-266 52-332 (461)
296 KOG1538 Uncharacterized conser 89.3 5.7 0.00012 38.8 11.1 59 97-162 14-73 (1081)
297 smart00135 LY Low-density lipo 89.3 1.3 2.8E-05 26.1 4.9 34 32-65 6-40 (43)
298 TIGR03074 PQQ_membr_DH membran 89.2 28 0.0006 35.6 20.0 141 47-195 261-428 (764)
299 KOG0645 WD40 repeat protein [G 89.2 14 0.00031 32.1 21.8 118 96-233 15-137 (312)
300 PF14517 Tachylectin: Tachylec 89.1 2.7 5.8E-05 35.7 8.0 119 38-190 84-207 (229)
301 TIGR03548 mutarot_permut cycli 89.0 17 0.00037 32.7 21.4 79 100-197 118-202 (323)
302 KOG3914 WD repeat protein WDR4 88.6 16 0.00035 33.3 12.9 155 36-232 64-224 (390)
303 PLN02193 nitrile-specifier pro 88.5 24 0.00051 33.8 28.1 116 99-232 169-303 (470)
304 PF14517 Tachylectin: Tachylec 88.4 5.7 0.00012 33.7 9.6 143 100-265 38-196 (229)
305 KOG1408 WD40 repeat protein [F 88.4 6.1 0.00013 39.0 10.7 114 99-232 600-714 (1080)
306 PF14269 Arylsulfotran_2: Aryl 88.3 18 0.0004 32.3 19.6 96 37-133 59-181 (299)
307 PF02897 Peptidase_S9_N: Proly 88.1 23 0.00049 33.1 20.0 155 100-268 128-298 (414)
308 TIGR03547 muta_rot_YjhT mutatr 87.6 22 0.00047 32.3 24.8 32 100-133 58-101 (346)
309 KOG0294 WD40 repeat-containing 87.3 21 0.00045 31.8 16.8 154 37-235 130-285 (362)
310 PF14339 DUF4394: Domain of un 87.0 18 0.0004 30.9 13.2 114 97-229 28-161 (236)
311 KOG1963 WD40 repeat protein [G 87.0 36 0.00079 34.3 18.6 61 201-266 252-312 (792)
312 COG4247 Phy 3-phytase (myo-ino 86.8 20 0.00043 31.0 18.5 96 119-232 128-235 (364)
313 PF06739 SBBP: Beta-propeller 86.6 1.1 2.4E-05 26.2 3.1 31 25-55 2-33 (38)
314 KOG4227 WD40 repeat protein [G 86.1 14 0.0003 33.8 11.0 106 36-162 107-215 (609)
315 KOG0302 Ribosome Assembly prot 86.1 20 0.00043 32.7 11.9 116 98-232 214-333 (440)
316 KOG1445 Tumor-specific antigen 85.9 37 0.0008 33.3 15.5 50 182-232 701-751 (1012)
317 KOG0647 mRNA export protein (c 84.8 28 0.0006 30.8 20.9 90 26-133 17-110 (347)
318 KOG4328 WD40 protein [Function 84.7 35 0.00075 31.9 18.3 153 38-231 190-353 (498)
319 KOG2096 WD40 repeat protein [G 83.4 33 0.00072 30.7 16.0 178 45-266 198-393 (420)
320 KOG0264 Nucleosome remodeling 83.2 24 0.00051 32.7 11.3 117 99-232 181-304 (422)
321 KOG2111 Uncharacterized conser 83.0 34 0.00074 30.5 14.6 72 142-232 182-257 (346)
322 KOG0650 WD40 repeat nucleolar 82.6 12 0.00026 36.1 9.5 109 96-229 567-678 (733)
323 KOG1408 WD40 repeat protein [F 82.6 56 0.0012 32.7 17.6 31 36-66 461-491 (1080)
324 KOG2395 Protein involved in va 82.5 48 0.001 31.9 13.5 36 97-132 334-371 (644)
325 KOG1272 WD40-repeat-containing 81.5 6.3 0.00014 36.7 7.1 110 99-232 213-324 (545)
326 KOG1188 WD40 repeat protein [G 81.4 41 0.00088 30.3 14.8 185 47-266 41-233 (376)
327 PLN02193 nitrile-specifier pro 81.0 54 0.0012 31.4 26.0 143 57-232 194-352 (470)
328 KOG0277 Peroxisomal targeting 80.7 37 0.0008 29.4 15.1 167 28-233 3-180 (311)
329 KOG0295 WD40 repeat-containing 80.3 46 0.001 30.3 16.7 50 214-266 305-354 (406)
330 KOG0305 Anaphase promoting com 80.2 57 0.0012 31.2 21.0 156 35-232 218-377 (484)
331 KOG0269 WD40 repeat-containing 80.1 31 0.00067 34.4 11.6 114 98-233 136-252 (839)
332 PRK13616 lipoprotein LpqB; Pro 80.1 65 0.0014 31.9 23.9 196 98-335 352-560 (591)
333 TIGR03548 mutarot_permut cycli 79.9 45 0.00098 29.9 22.1 80 181-266 88-180 (323)
334 KOG1230 Protein containing rep 79.4 54 0.0012 30.5 13.0 115 56-198 98-224 (521)
335 KOG1188 WD40 repeat protein [G 79.4 48 0.001 29.9 12.4 138 180-342 49-194 (376)
336 KOG0301 Phospholipase A2-activ 77.9 76 0.0017 31.4 17.7 148 38-229 18-167 (745)
337 KOG0918 Selenium-binding prote 77.0 23 0.0005 32.6 9.1 30 97-126 313-343 (476)
338 COG5276 Uncharacterized conser 77.0 54 0.0012 29.2 17.1 101 107-233 96-201 (370)
339 KOG4547 WD40 repeat-containing 76.3 76 0.0017 30.6 17.5 122 48-210 72-194 (541)
340 KOG4547 WD40 repeat-containing 76.1 77 0.0017 30.6 12.8 85 178-266 77-164 (541)
341 smart00284 OLF Olfactomedin-li 75.2 55 0.0012 28.5 11.5 48 214-263 85-143 (255)
342 smart00564 PQQ beta-propeller 74.1 8.8 0.00019 21.0 4.0 25 107-131 6-30 (33)
343 KOG0295 WD40 repeat-containing 73.0 75 0.0016 29.0 16.0 158 36-232 195-365 (406)
344 PF00400 WD40: WD domain, G-be 72.8 9.5 0.00021 21.7 4.1 27 36-62 13-39 (39)
345 KOG0303 Actin-binding protein 72.8 80 0.0017 29.2 18.7 52 180-232 153-204 (472)
346 KOG0307 Vesicle coat complex C 72.4 16 0.00036 37.8 7.8 163 36-232 118-285 (1049)
347 PF14339 DUF4394: Domain of un 72.1 63 0.0014 27.7 19.9 91 26-130 15-108 (236)
348 KOG3881 Uncharacterized conser 71.5 84 0.0018 28.9 16.1 89 175-266 220-310 (412)
349 KOG0918 Selenium-binding prote 70.8 20 0.00042 33.1 7.1 31 203-233 314-344 (476)
350 PF11768 DUF3312: Protein of u 70.8 33 0.00071 33.1 9.0 78 27-128 254-332 (545)
351 KOG0321 WD40 repeat-containing 69.3 1.2E+02 0.0026 29.9 13.2 36 98-133 274-309 (720)
352 PF00400 WD40: WD domain, G-be 69.1 18 0.0004 20.4 5.7 32 197-229 8-39 (39)
353 PF15492 Nbas_N: Neuroblastoma 68.7 82 0.0018 27.7 19.2 44 29-72 36-81 (282)
354 PF01011 PQQ: PQQ enzyme repea 68.4 13 0.00027 21.5 3.8 26 108-133 1-26 (38)
355 TIGR03074 PQQ_membr_DH membran 68.2 1.5E+02 0.0032 30.5 24.1 26 107-132 194-219 (764)
356 PF05935 Arylsulfotrans: Aryls 68.1 1.2E+02 0.0025 29.2 17.7 110 25-135 178-311 (477)
357 KOG1517 Guanine nucleotide bin 66.9 1.8E+02 0.0038 30.9 19.5 115 99-233 1167-1289(1387)
358 KOG4497 Uncharacterized conser 66.6 87 0.0019 28.3 10.0 139 40-220 14-153 (447)
359 PF02897 Peptidase_S9_N: Proly 66.5 1.1E+02 0.0024 28.4 19.0 81 180-262 149-242 (414)
360 KOG0290 Conserved WD40 repeat- 66.1 96 0.0021 27.5 11.8 120 96-232 197-319 (364)
361 PF13570 PQQ_3: PQQ-like domai 65.9 12 0.00025 21.8 3.4 26 38-65 15-40 (40)
362 KOG4283 Transcription-coupled 65.5 99 0.0022 27.5 16.8 104 118-231 169-276 (397)
363 PF11763 DIPSY: Cell-wall adhe 64.9 56 0.0012 24.4 10.3 95 144-266 6-101 (123)
364 KOG1034 Transcriptional repres 63.8 1.1E+02 0.0025 27.5 14.2 83 180-265 114-200 (385)
365 KOG0270 WD40 repeat-containing 63.5 1.3E+02 0.0028 28.2 18.5 152 39-232 248-405 (463)
366 KOG0277 Peroxisomal targeting 62.9 1E+02 0.0022 26.8 14.2 157 37-232 63-222 (311)
367 KOG0771 Prolactin regulatory e 62.0 1.3E+02 0.0029 27.8 12.2 51 180-232 165-216 (398)
368 KOG2394 WD40 protein DMR-N9 [G 61.7 37 0.00081 32.5 7.3 92 36-151 292-384 (636)
369 PF11768 DUF3312: Protein of u 61.2 91 0.002 30.2 9.9 70 143-232 261-330 (545)
370 PF07250 Glyoxal_oxid_N: Glyox 60.7 1.1E+02 0.0024 26.4 15.8 128 119-266 48-189 (243)
371 TIGR02608 delta_60_rpt delta-6 60.5 22 0.00048 22.7 4.1 40 250-308 4-45 (55)
372 KOG1310 WD40 repeat protein [G 59.7 68 0.0015 31.0 8.6 119 94-233 49-180 (758)
373 KOG2315 Predicted translation 58.4 1.8E+02 0.0039 28.1 17.9 120 117-266 251-374 (566)
374 KOG1009 Chromatin assembly com 57.9 81 0.0018 29.1 8.6 100 36-157 67-180 (434)
375 PRK14131 N-acetylneuraminic ac 57.7 1.6E+02 0.0034 27.2 22.3 39 118-160 190-228 (376)
376 KOG3621 WD40 repeat-containing 56.7 98 0.0021 30.8 9.4 142 100-266 38-189 (726)
377 KOG2315 Predicted translation 56.5 2E+02 0.0042 27.9 16.5 111 96-232 271-391 (566)
378 PF08309 LVIVD: LVIVD repeat; 56.5 41 0.00089 20.1 4.6 27 98-126 4-30 (42)
379 PF00780 CNH: CNH domain; Int 54.7 1.4E+02 0.0031 25.8 16.4 176 101-331 1-205 (275)
380 KOG0274 Cdc4 and related F-box 54.0 2.2E+02 0.0049 27.8 23.7 149 36-232 251-401 (537)
381 KOG0270 WD40 repeat-containing 52.6 2E+02 0.0044 27.0 19.1 106 107-233 255-362 (463)
382 KOG4497 Uncharacterized conser 52.6 1.4E+02 0.003 27.0 8.9 78 180-262 70-149 (447)
383 KOG3621 WD40 repeat-containing 52.4 2.6E+02 0.0056 28.1 20.0 104 41-163 40-146 (726)
384 KOG0647 mRNA export protein (c 51.9 1.8E+02 0.0038 26.0 17.5 114 98-232 30-146 (347)
385 KOG3914 WD repeat protein WDR4 51.7 2E+02 0.0043 26.6 11.2 51 181-232 129-182 (390)
386 PF04762 IKI3: IKI3 family; I 50.7 3.3E+02 0.0071 28.8 14.3 127 100-252 26-164 (928)
387 PF09826 Beta_propel: Beta pro 50.6 2.5E+02 0.0054 27.4 13.8 70 251-335 275-345 (521)
388 COG4447 Uncharacterized protei 50.5 1E+02 0.0023 27.2 7.7 46 23-68 31-76 (339)
389 PF13970 DUF4221: Domain of un 49.3 2E+02 0.0044 25.9 14.9 170 37-229 44-240 (333)
390 TIGR03547 muta_rot_YjhT mutatr 49.0 2E+02 0.0044 25.9 20.6 39 118-160 169-207 (346)
391 KOG0641 WD40 repeat protein [G 49.0 1.7E+02 0.0036 24.9 23.6 83 180-266 162-251 (350)
392 KOG1310 WD40 repeat protein [G 48.4 2.6E+02 0.0056 27.3 10.5 73 36-126 52-126 (758)
393 KOG0642 Cell-cycle nuclear pro 48.2 2.7E+02 0.0058 27.1 13.3 80 38-126 348-427 (577)
394 COG4590 ABC-type uncharacteriz 48.0 2.5E+02 0.0055 26.7 10.2 102 201-307 221-344 (733)
395 KOG1523 Actin-related protein 47.5 2.1E+02 0.0046 25.7 13.0 157 37-229 13-174 (361)
396 PRK13616 lipoprotein LpqB; Pro 47.4 3E+02 0.0065 27.4 21.8 36 198-234 493-530 (591)
397 KOG1517 Guanine nucleotide bin 47.4 3.8E+02 0.0083 28.6 15.1 144 98-264 1211-1369(1387)
398 KOG1034 Transcriptional repres 46.6 2.3E+02 0.0049 25.7 15.9 109 102-232 98-212 (385)
399 KOG1009 Chromatin assembly com 45.7 2.5E+02 0.0054 26.1 9.6 32 200-232 123-154 (434)
400 COG5167 VID27 Protein involved 45.0 3E+02 0.0065 26.7 11.3 99 111-231 531-632 (776)
401 PF12768 Rax2: Cortical protei 43.8 2.3E+02 0.005 25.1 10.9 86 55-161 15-109 (281)
402 KOG1645 RING-finger-containing 43.2 1.4E+02 0.003 27.8 7.7 73 142-232 194-267 (463)
403 PF07676 PD40: WD40-like Beta 40.1 71 0.0015 18.1 4.8 20 203-222 11-30 (39)
404 KOG2114 Vacuolar assembly/sort 39.3 4.6E+02 0.0099 27.2 18.5 28 37-64 26-53 (933)
405 KOG0267 Microtubule severing p 38.3 2.9E+02 0.0062 27.9 9.4 177 37-264 73-256 (825)
406 KOG0300 WD40 repeat-containing 38.3 3E+02 0.0065 24.8 14.2 93 118-232 295-387 (481)
407 PF11725 AvrE: Pathogenicity f 38.2 2.6E+02 0.0057 31.2 9.9 53 99-158 366-418 (1774)
408 PF12894 Apc4_WD40: Anaphase-p 37.6 98 0.0021 19.0 5.1 30 36-65 13-42 (47)
409 KOG1332 Vesicle coat complex C 36.6 2.9E+02 0.0062 24.0 14.8 42 30-71 51-95 (299)
410 PF03178 CPSF_A: CPSF A subuni 35.3 3.2E+02 0.007 24.3 11.7 50 181-234 62-118 (321)
411 PRK10115 protease 2; Provision 35.2 5E+02 0.011 26.4 17.0 150 144-335 129-289 (686)
412 COG5167 VID27 Protein involved 34.1 4.5E+02 0.0098 25.6 13.7 36 97-132 468-505 (776)
413 COG4590 ABC-type uncharacteriz 33.4 4.3E+02 0.0094 25.3 9.4 29 36-65 222-250 (733)
414 KOG0322 G-protein beta subunit 32.7 2E+02 0.0043 25.3 6.6 32 36-67 253-284 (323)
415 PF15390 DUF4613: Domain of un 32.3 3.2E+02 0.0068 27.0 8.5 65 198-263 336-401 (671)
416 KOG0267 Microtubule severing p 32.0 5.5E+02 0.012 26.0 10.2 110 98-231 73-184 (825)
417 COG4222 Uncharacterized protei 31.8 4.3E+02 0.0094 24.7 9.6 18 202-219 201-218 (391)
418 PF08138 Sex_peptide: Sex pept 31.3 16 0.00035 22.9 0.0 17 1-17 1-17 (56)
419 PF09910 DUF2139: Uncharacteri 31.0 3.9E+02 0.0085 24.0 22.3 67 57-135 79-149 (339)
420 PF11725 AvrE: Pathogenicity f 30.9 3.3E+02 0.0072 30.5 9.2 32 37-70 365-396 (1774)
421 KOG0274 Cdc4 and related F-box 30.1 5.4E+02 0.012 25.3 21.3 138 49-232 221-360 (537)
422 TIGR03803 Gloeo_Verruco Gloeo_ 30.0 1.1E+02 0.0024 17.4 4.5 13 291-303 16-28 (34)
423 KOG2111 Uncharacterized conser 29.5 4.3E+02 0.0092 23.9 17.4 150 98-271 97-251 (346)
424 smart00320 WD40 WD40 repeats. 29.5 86 0.0019 15.9 3.5 26 36-61 14-39 (40)
425 KOG4640 Anaphase-promoting com 28.9 1.2E+02 0.0025 29.9 5.2 37 30-66 58-94 (665)
426 KOG0379 Kelch repeat-containin 28.5 5.4E+02 0.012 24.8 15.8 70 118-200 140-209 (482)
427 KOG4283 Transcription-coupled 28.3 4.4E+02 0.0095 23.6 22.0 53 180-232 167-220 (397)
428 PF11134 Phage_stabilise: Phag 27.3 5.4E+02 0.012 24.4 12.8 125 97-253 55-186 (469)
429 PF02191 OLF: Olfactomedin-lik 27.3 4.1E+02 0.009 23.0 11.6 60 100-161 174-238 (250)
430 PF13964 Kelch_6: Kelch motif 26.6 1.5E+02 0.0033 17.8 5.3 28 107-134 11-45 (50)
431 KOG1587 Cytoplasmic dynein int 25.9 6.5E+02 0.014 24.8 15.8 30 203-232 444-473 (555)
432 PF12275 DUF3616: Protein of u 25.7 1.9E+02 0.0042 26.3 5.8 18 249-266 2-19 (330)
433 KOG1897 Damage-specific DNA bi 25.3 8.4E+02 0.018 25.9 16.8 111 97-232 831-943 (1096)
434 KOG2395 Protein involved in va 24.9 6.6E+02 0.014 24.6 15.9 84 180-266 355-450 (644)
435 TIGR00547 lolA periplasmic cha 24.5 77 0.0017 26.5 2.9 24 107-131 77-100 (204)
436 PF15416 DUF4623: Domain of un 23.8 5.7E+02 0.012 23.4 10.4 116 207-342 138-269 (442)
437 KOG3611 Semaphorins [Signal tr 23.6 5.4E+02 0.012 26.4 9.0 68 44-126 421-493 (737)
438 PTZ00486 apyrase Superfamily; 23.5 3.8E+02 0.0082 24.5 7.1 57 257-337 124-185 (352)
439 KOG0379 Kelch repeat-containin 23.5 6.7E+02 0.014 24.1 12.1 110 57-196 140-256 (482)
440 PF01491 Frataxin_Cyay: Fratax 22.6 3.2E+02 0.007 20.2 6.3 24 107-130 59-82 (109)
441 PF09826 Beta_propel: Beta pro 22.4 7.4E+02 0.016 24.2 13.2 107 118-234 249-358 (521)
442 TIGR02171 Fb_sc_TIGR02171 Fibr 22.4 6.8E+02 0.015 26.3 9.4 54 182-235 330-389 (912)
443 PF13970 DUF4221: Domain of un 21.7 3.7E+02 0.008 24.2 7.1 70 211-308 54-131 (333)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=3.8e-34 Score=249.76 Aligned_cols=302 Identities=47% Similarity=0.869 Sum_probs=258.8
Q ss_pred CCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290 33 GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI 112 (343)
Q Consensus 33 ~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v 112 (343)
.+..||.+.+|+.|.--|++..++++.+|..+...+..+...........|........++.+++|.||+++...|.|||
T Consensus 52 ~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~V 131 (376)
T KOG1520|consen 52 HLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYV 131 (376)
T ss_pred ccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEE
Confidence 46679999999987767888899999999887666777766543344455555445666778999999999996679999
Q ss_pred EeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290 113 ADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN 192 (343)
Q Consensus 113 ~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 192 (343)
||..-|++.+++++++.+.+....++.+..+.|++.+++ +|.+||+|++.+++++++.+.+.++.+.|++++||+.+++
T Consensus 132 aDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~ 210 (376)
T KOG1520|consen 132 ADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKV 210 (376)
T ss_pred EecceeeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccc
Confidence 999999999999999988888888888889999999999 5999999999999999999999999889999999999999
Q ss_pred eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCCEEEEeccCCCcc
Q 019290 193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGEFWIAMNSARGKI 271 (343)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwi~~~~~~~~~ 271 (343)
.+++..++.++||+++++|+..+.++++...+|.+|.+.++.. ++.++|++ ++|+||+|..+++|.+||+.+.++.
T Consensus 211 ~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~-gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~-- 287 (376)
T KOG1520|consen 211 TKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKA-GTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRS-- 287 (376)
T ss_pred hhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCcc-CchhhHhhcCCCCCcceeECCCCCEEEEEecccc--
Confidence 8899999999999999999999999999999999999998766 67788988 9999999999999999999876333
Q ss_pred ccccccccccccCCCcc---------------------cCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEE
Q 019290 272 ESNKKTAFCEETAKPWF---------------------LRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYT 330 (343)
Q Consensus 272 ~~~~~~~~~~~~~~~~~---------------------~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i 330 (343)
..|+.....||+ .+...|.+.|.+|+.++++++.++.....++.+.+.+|+||+
T Consensus 288 -----~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~Lyi 362 (376)
T KOG1520|consen 288 -----TLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYI 362 (376)
T ss_pred -----hHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEE
Confidence 356666666664 122667677789999999998888777777788888999999
Q ss_pred ecCCCCeEEEEcC
Q 019290 331 GSSVQPYVVVIKA 343 (343)
Q Consensus 331 ~~~~~~~i~~~~~ 343 (343)
|+....+|.|++.
T Consensus 363 GS~~~p~i~~lkl 375 (376)
T KOG1520|consen 363 GSLFNPYIARLKL 375 (376)
T ss_pred cccCcceeEEEec
Confidence 9999999999873
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.96 E-value=1.4e-27 Score=207.85 Aligned_cols=236 Identities=30% Similarity=0.474 Sum_probs=180.4
Q ss_pred CceEEEcC-CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 37 PESLAFDC-NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 37 p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
||++++++ +|.++|++..+++|+++++.++....+.. ..|.|++++.+++.+|+++
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~----------------------~~~~G~~~~~~~g~l~v~~- 58 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL----------------------PGPNGMAFDRPDGRLYVAD- 58 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES----------------------SSEEEEEEECTTSEEEEEE-
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec----------------------CCCceEEEEccCCEEEEEE-
Confidence 78999998 78888899999999999999876655421 1289999994389999996
Q ss_pred CCeEEEEeCCCCeEEEcccccCCC-CccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290 116 YFGLMVVGPNGGQAQQLASSAGGI-PFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT 194 (343)
Q Consensus 116 ~~gi~~~d~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 194 (343)
..++.++|+++++++.+.....+. +...+|++++|+ +|++|++++...... ....++|++++++ ++..
T Consensus 59 ~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~ 127 (246)
T PF08450_consen 59 SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVT 127 (246)
T ss_dssp TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEE
T ss_pred cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccc---------cccccceEEECCC-CeEE
Confidence 567788899999998876654333 678899999999 599999987531100 0001789999998 7888
Q ss_pred EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccc-cccceeeecC---CCCCCceeeCCCCCEEEEeccCCCc
Q 019290 195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERT-TYTPQLFAEM---PRFPDNIKSDSKGEFWIAMNSARGK 270 (343)
Q Consensus 195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~-~~~~~~~~~~---~~~p~~i~~d~~G~lwi~~~~~~~~ 270 (343)
.+..++..||||++++|++.||++++..++|++|+++.+.. +...+.+... .+.|+|+++|++|+||++.+.
T Consensus 128 ~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~---- 203 (246)
T PF08450_consen 128 VVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG---- 203 (246)
T ss_dssp EEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----
T ss_pred EEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----
Confidence 77888899999999999999999999999999999975322 2444555442 235999999999999999887
Q ss_pred cccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEE---eCCEEEEecCC
Q 019290 271 IESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQE---YGEYLYTGSSV 334 (343)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~g~l~i~~~~ 334 (343)
.+.|+++|++|+.+..+..|.. .++.+.. +.++|||++++
T Consensus 204 --------------------~~~I~~~~p~G~~~~~i~~p~~----~~t~~~fgg~~~~~L~vTta~ 246 (246)
T PF08450_consen 204 --------------------GGRIVVFDPDGKLLREIELPVP----RPTNCAFGGPDGKTLYVTTAR 246 (246)
T ss_dssp --------------------TTEEEEEETTSCEEEEEE-SSS----SEEEEEEESTTSSEEEEEEB-
T ss_pred --------------------CCEEEEECCCccEEEEEcCCCC----CEEEEEEECCCCCEEEEEeCC
Confidence 4699999999999999887732 3444443 46889999863
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=8.1e-24 Score=186.67 Aligned_cols=251 Identities=22% Similarity=0.331 Sum_probs=180.8
Q ss_pred CCCCCceEEEcCCCC-eeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEE
Q 019290 33 GVVGPESLAFDCNGE-GPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLY 111 (343)
Q Consensus 33 ~~~~p~~l~~d~~g~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~ 111 (343)
+..-.|+.+++++.. ++|++..+++|+++++.+++...+.. ....+.++.++. ++.|+
T Consensus 23 ~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~--------------------p~~~~~~~~~d~-~g~Lv 81 (307)
T COG3386 23 GATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS--------------------PGGFSSGALIDA-GGRLI 81 (307)
T ss_pred ccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC--------------------CCCcccceeecC-CCeEE
Confidence 444688989998866 77899999999999998877666642 222356677776 67777
Q ss_pred EEeCCCeEEEEeCCCCeE-EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290 112 IADAYFGLMVVGPNGGQA-QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK 190 (343)
Q Consensus 112 v~~~~~gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 190 (343)
.+ ..|+++++++++.. +.+.....+.+.+.+|++.+++ +|++||+++++ +. ....+....+.|||+|+.+
T Consensus 82 ~~--~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g 152 (307)
T COG3386 82 AC--EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDG 152 (307)
T ss_pred EE--ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCC
Confidence 76 46788888776666 6666665666778999999999 69999999873 10 0111223356899999864
Q ss_pred CceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC-ccccccce--eeec-CCCCCCceeeCCCCCEEEEecc
Q 019290 191 KNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG-ERTTYTPQ--LFAE-MPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~-~~~~~~~~--~~~~-~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
+..+.+..++..+||+|++||++.+|++++..++|++++++. ........ .+.. .++.|||+++|++|++|++...
T Consensus 153 ~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~ 232 (307)
T COG3386 153 GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW 232 (307)
T ss_pred CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc
Confidence 444444444899999999999999999999999999999872 11112222 2222 4689999999999999975443
Q ss_pred CCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCe
Q 019290 267 ARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPY 337 (343)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~ 337 (343)
. .+.|.+|+|+|++...+..|.. ....++..-++.++|||++..++.
T Consensus 233 ~-----------------------g~~v~~~~pdG~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 233 G-----------------------GGRVVRFNPDGKLLGEIKLPVK-RPTNPAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred C-----------------------CceEEEECCCCcEEEEEECCCC-CCccceEeCCCcCEEEEEecCCCC
Confidence 1 2388999999999999988743 122222223336899999998854
No 4
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.92 E-value=6.9e-23 Score=170.28 Aligned_cols=251 Identities=16% Similarity=0.137 Sum_probs=195.0
Q ss_pred ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290 23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~ 102 (343)
.....++++|....|..++.++||.+||.+...+.|-++||.+++...+.. .....|++|.
T Consensus 50 ~~s~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL-------------------g~Ga~Phgiv 110 (353)
T COG4257 50 DGSSAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL-------------------GSGASPHGIV 110 (353)
T ss_pred CCccceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEec-------------------CCCCCCceEE
Confidence 446678888877799999999999978888888999999999999888853 3455799999
Q ss_pred EeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce
Q 019290 103 FNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR 182 (343)
Q Consensus 103 ~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 182 (343)
+.+ ++..||+++..+|.++|+++..++++.-.. ......++...+|+ +|+|||+.+... .|
T Consensus 111 ~gp-dg~~Witd~~~aI~R~dpkt~evt~f~lp~-~~a~~nlet~vfD~-~G~lWFt~q~G~---------------yG- 171 (353)
T COG4257 111 VGP-DGSAWITDTGLAIGRLDPKTLEVTRFPLPL-EHADANLETAVFDP-WGNLWFTGQIGA---------------YG- 171 (353)
T ss_pred ECC-CCCeeEecCcceeEEecCcccceEEeeccc-ccCCCcccceeeCC-CccEEEeecccc---------------ce-
Confidence 999 999999998789999999999998874332 22335678999999 599999876421 22
Q ss_pred EEEEeCCCCceEEeec-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec---CCCCCCceeeCCCC
Q 019290 183 LLKYDPLKKNVTVMYN-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE---MPRFPDNIKSDSKG 258 (343)
Q Consensus 183 v~~~d~~~~~~~~~~~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~~G 258 (343)
|+|+.++.++++.. ....++|||..+||+ +|+++-..+-|-++|.... ..+.+.. +..-...+..|+.|
T Consensus 172 --rLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnaiaridp~~~----~aev~p~P~~~~~gsRriwsdpig 244 (353)
T COG4257 172 --RLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAIARIDPFAG----HAEVVPQPNALKAGSRRIWSDPIG 244 (353)
T ss_pred --ecCcccCceeeeccCCCCCCcceEECCCCc-EEEEeccccceEEcccccC----CcceecCCCcccccccccccCccC
Confidence 78888777776643 345699999999998 6777778889999886642 2223221 11124457789999
Q ss_pred CEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeE
Q 019290 259 EFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYV 338 (343)
Q Consensus 259 ~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i 338 (343)
++|++++. .+.+.+|||..+.-..+..|.. ....-+..+.+.+++|+..+..+.|
T Consensus 245 ~~wittwg------------------------~g~l~rfdPs~~sW~eypLPgs-~arpys~rVD~~grVW~sea~agai 299 (353)
T COG4257 245 RAWITTWG------------------------TGSLHRFDPSVTSWIEYPLPGS-KARPYSMRVDRHGRVWLSEADAGAI 299 (353)
T ss_pred cEEEeccC------------------------CceeeEeCcccccceeeeCCCC-CCCcceeeeccCCcEEeeccccCce
Confidence 99999998 5689999998777777777654 3444455566699999999999999
Q ss_pred EEEcC
Q 019290 339 VVIKA 343 (343)
Q Consensus 339 ~~~~~ 343 (343)
.|+|+
T Consensus 300 ~rfdp 304 (353)
T COG4257 300 GRFDP 304 (353)
T ss_pred eecCc
Confidence 99986
No 5
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.83 E-value=2.4e-17 Score=168.32 Aligned_cols=263 Identities=18% Similarity=0.223 Sum_probs=177.7
Q ss_pred CCCCceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290 34 VVGPESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI 112 (343)
Q Consensus 34 ~~~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v 112 (343)
+..|.++++|+. |+++++++.+++|.++|..+.....+.... . ....+| ......+..|.|++++++++.|||
T Consensus 567 l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g-~--~G~~dG---~~~~a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 567 LKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTG-E--EGLRDG---SFEDATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred CCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCC-C--cCCCCC---chhccccCCCcEEEEeCCCCEEEE
Confidence 457889999986 665557788999999998764333332100 0 011111 111235667999999985667999
Q ss_pred EeCCCe-EEEEeCCCCeEEEccccc------C------CCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290 113 ADAYFG-LMVVGPNGGQAQQLASSA------G------GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR 179 (343)
Q Consensus 113 ~~~~~g-i~~~d~~~~~~~~~~~~~------~------~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~ 179 (343)
+|+.++ |.++|+.++.++.+.... . ...++.|.++++++.++.+|+++..
T Consensus 641 aDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~----------------- 703 (1057)
T PLN02919 641 ADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG----------------- 703 (1057)
T ss_pred EeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------
Confidence 997755 899999988887664310 0 1125678999999855899999875
Q ss_pred CceEEEEeCCCCceEEeec---------------CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcccc--c-----
Q 019290 180 SGRLLKYDPLKKNVTVMYN---------------GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTT--Y----- 237 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~~~~~---------------~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~--~----- 237 (343)
.+.|+++|..++....+.. .+..|.+++++++++.||+++..+++|.+|++++.... .
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 5678888877665543321 24568999999999999999999999999998752210 0
Q ss_pred ---cceeeec--------CCCCCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEE
Q 019290 238 ---TPQLFAE--------MPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDV 306 (343)
Q Consensus 238 ---~~~~~~~--------~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~ 306 (343)
....+.. .-..|.++++|++|++||++.. .+.|.++|+++..+..
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------------------------N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------------------------NHKIKKLDPATKRVTT 839 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------------------------CCEEEEEECCCCeEEE
Confidence 0000000 0125889999999999999987 5688999987655443
Q ss_pred eeCC------CC----CccCCceeEEEe-CCEEEEecCCCCeEEEEcC
Q 019290 307 LDGN------EG----NTLNSVSEVQEY-GEYLYTGSSVQPYVVVIKA 343 (343)
Q Consensus 307 ~~~~------~~----~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 343 (343)
+... ++ .....+..+..+ +|+|||+....++|.+++.
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 3211 01 123345555544 8899999999999999863
No 6
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.82 E-value=1.1e-17 Score=139.49 Aligned_cols=247 Identities=13% Similarity=0.131 Sum_probs=180.7
Q ss_pred cccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE
Q 019290 24 KSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF 103 (343)
Q Consensus 24 ~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~ 103 (343)
-..++++++...+|++|..++||..|++++.. .|.|+|+++.++++|...... ...+-+...|
T Consensus 93 Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~----------------a~~nlet~vf 155 (353)
T COG4257 93 GEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEH----------------ADANLETAVF 155 (353)
T ss_pred CceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccccc----------------CCCcccceee
Confidence 34678889977899999999999944454444 899999999999999653322 2223456778
Q ss_pred eCCCCeEEEEeCCCeEE-EEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce
Q 019290 104 NPVTCDLYIADAYFGLM-VVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR 182 (343)
Q Consensus 104 ~~~~~~l~v~~~~~gi~-~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 182 (343)
|+ .|+|||. ...|.+ ++|+..+.++.+. ...+ ..+++|++.+ ||.+|++... .+-
T Consensus 156 D~-~G~lWFt-~q~G~yGrLdPa~~~i~vfp-aPqG---~gpyGi~atp-dGsvwyasla-----------------gna 211 (353)
T COG4257 156 DP-WGNLWFT-GQIGAYGRLDPARNVISVFP-APQG---GGPYGICATP-DGSVWYASLA-----------------GNA 211 (353)
T ss_pred CC-CccEEEe-eccccceecCcccCceeeec-cCCC---CCCcceEECC-CCcEEEEecc-----------------ccc
Confidence 98 9999998 467744 8999877776653 2233 4689999999 6999997654 456
Q ss_pred EEEEeCCCCceEEeecCC---CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee--cCCCCCCceeeCCC
Q 019290 183 LLKYDPLKKNVTVMYNGL---SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA--EMPRFPDNIKSDSK 257 (343)
Q Consensus 183 v~~~d~~~~~~~~~~~~~---~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~ 257 (343)
|.++|+.++..+++...- .....+..++.+ .+++++..++++++|+... .....+. .....|+.|.+|..
T Consensus 212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig-~~wittwg~g~l~rfdPs~----~sW~eypLPgs~arpys~rVD~~ 286 (353)
T COG4257 212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIG-RAWITTWGTGSLHRFDPSV----TSWIEYPLPGSKARPYSMRVDRH 286 (353)
T ss_pred eEEcccccCCcceecCCCcccccccccccCccC-cEEEeccCCceeeEeCccc----ccceeeeCCCCCCCcceeeeccC
Confidence 899999877655543221 223445556655 4889999999999999764 2222222 13346889999999
Q ss_pred CCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCe
Q 019290 258 GEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPY 337 (343)
Q Consensus 258 G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~ 337 (343)
|++|..+.. .+.|.+||+....+.++..+..+ .....+....|++|++....+.
T Consensus 287 grVW~sea~------------------------agai~rfdpeta~ftv~p~pr~n--~gn~ql~gr~ge~W~~e~gvd~ 340 (353)
T COG4257 287 GRVWLSEAD------------------------AGAIGRFDPETARFTVLPIPRPN--SGNIQLDGRPGELWFTEAGVDA 340 (353)
T ss_pred CcEEeeccc------------------------cCceeecCcccceEEEecCCCCC--CCceeccCCCCceeecccCcce
Confidence 999999887 45888999999999999876542 2233444458999999999999
Q ss_pred EEEEc
Q 019290 338 VVVIK 342 (343)
Q Consensus 338 i~~~~ 342 (343)
+++++
T Consensus 341 lv~~r 345 (353)
T COG4257 341 LVTTR 345 (353)
T ss_pred eEEEE
Confidence 99875
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.67 E-value=5.2e-14 Score=144.16 Aligned_cols=208 Identities=17% Similarity=0.249 Sum_probs=141.0
Q ss_pred CCCCceEEEcCCCCeeE-EEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290 34 VVGPESLAFDCNGEGPY-VGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI 112 (343)
Q Consensus 34 ~~~p~~l~~d~~g~~l~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v 112 (343)
+..|.+|+++++++.+| +++.+++|.++|..++....+....... ....++. .........|.+++++++++.+||
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g-~~~~gg~--~~~~~~ln~P~gVa~dp~~g~LyV 699 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKG-SDYQGGK--KGTSQVLNSPWDVCFEPVNEKVYI 699 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCccc-CCCCCCh--hhhHhhcCCCeEEEEecCCCeEEE
Confidence 45799999999988666 5677889999999887776664321100 0000000 000112457899999987789999
Q ss_pred EeCCCe-EEEEeCCCCeEEEccccc----------CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCc
Q 019290 113 ADAYFG-LMVVGPNGGQAQQLASSA----------GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSG 181 (343)
Q Consensus 113 ~~~~~g-i~~~d~~~~~~~~~~~~~----------~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~ 181 (343)
++..++ |+++|..++.+..+.... ....+..|++++++++++.||+++.. .+
T Consensus 700 ad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----------------n~ 762 (1057)
T PLN02919 700 AMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----------------SS 762 (1057)
T ss_pred EECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----------------CC
Confidence 987654 999999888765443110 01124678999999942349999875 56
Q ss_pred eEEEEeCCCCceEEee----------------------cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccc
Q 019290 182 RLLKYDPLKKNVTVMY----------------------NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTP 239 (343)
Q Consensus 182 ~v~~~d~~~~~~~~~~----------------------~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~ 239 (343)
+|.++|++++....+. ..+..|.+++++++|. +||++..+++|.+|+.++.. .
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~----v 837 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKR----V 837 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCe----E
Confidence 7888887765543221 0134688999999886 89999999999999987532 1
Q ss_pred eeeec--------------CCCCCCceeeCCCCCEEEEecc
Q 019290 240 QLFAE--------------MPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 240 ~~~~~--------------~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
..+.. .-..|.++++|++|++||++..
T Consensus 838 ~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 838 TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 11111 0125889999999999999876
No 8
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.66 E-value=5.2e-14 Score=115.10 Aligned_cols=237 Identities=13% Similarity=0.133 Sum_probs=152.5
Q ss_pred ceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC-CeEEEEeC
Q 019290 38 ESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT-CDLYIADA 115 (343)
Q Consensus 38 ~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-~~l~v~~~ 115 (343)
|+..++.+ +.++|++...+.+.|||..+.......... .. ..|..+--++ -..+.+..
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~------------------p~--~ag~ilpv~~~~q~~~v~~ 77 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEG------------------PP--SAGFILPVEGGPQEFAVGC 77 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEec------------------Cc--ceeEEEEecCCCceEEEee
Confidence 67777764 778899999999999998776655443221 00 1233332211 23444434
Q ss_pred CCe--EEEEeCCCCeEEEc---ccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC-CceEEEEeCC
Q 019290 116 YFG--LMVVGPNGGQAQQL---ASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR-SGRLLKYDPL 189 (343)
Q Consensus 116 ~~g--i~~~d~~~~~~~~~---~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~-~~~v~~~d~~ 189 (343)
+.. +..+|.-......+ .........+..|+-.+|| +|+.|.+++... .. . ... .+.++++- .
T Consensus 78 G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP-~Gryy~GtMad~------~~-~--le~~~g~Ly~~~-~ 146 (310)
T KOG4499|consen 78 GSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDP-DGRYYGGTMADF------GD-D--LEPIGGELYSWL-A 146 (310)
T ss_pred cceEEEEEcccccceeeeeeeccccCchHHhcccccCccCC-CCceeeeeeccc------cc-c--ccccccEEEEec-c
Confidence 444 44444222222222 1122223346789999999 599999887531 01 0 112 34455554 5
Q ss_pred CCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEE--ccCccccccceeeec-------CCCCCCceeeCCCCCE
Q 019290 190 KKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFW--LQGERTTYTPQLFAE-------MPRFPDNIKSDSKGEF 260 (343)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~--~~~~~~~~~~~~~~~-------~~~~p~~i~~d~~G~l 260 (343)
+++++.+......+|+++++.|.+..|+.++.+..|-.|+ ..+... .+.+.+.+ .+..|+|+++|.+|+|
T Consensus 147 ~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~-snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L 225 (310)
T KOG4499|consen 147 GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL-SNRKVIFDLRKSQPFESLEPDGMTIDTEGNL 225 (310)
T ss_pred CCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccc-cCcceeEEeccCCCcCCCCCCcceEccCCcE
Confidence 5888888888889999999999999999999999995555 444333 33333322 2247999999999999
Q ss_pred EEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-C--CEEEEecCC
Q 019290 261 WIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-G--EYLYTGSSV 334 (343)
Q Consensus 261 wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~--g~l~i~~~~ 334 (343)
||++++ .+.|+++|| +|+.+..+-.|. ..+++++.- + ..+|+++..
T Consensus 226 ~Va~~n------------------------g~~V~~~dp~tGK~L~eiklPt----~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 226 YVATFN------------------------GGTVQKVDPTTGKILLEIKLPT----PQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred EEEEec------------------------CcEEEEECCCCCcEEEEEEcCC----CceEEEEecCCCccEEEEEehh
Confidence 999999 569999999 699888877663 345555543 2 457777654
No 9
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=1.2e-12 Score=119.49 Aligned_cols=252 Identities=19% Similarity=0.225 Sum_probs=156.9
Q ss_pred CCCCCceEEEcCCCCeeEEEec----CCEEEEEEc--CCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290 33 GVVGPESLAFDCNGEGPYVGVS----DGRILKWKA--ANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV 106 (343)
Q Consensus 33 ~~~~p~~l~~d~~g~~l~~~~~----~g~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~ 106 (343)
...+|..|+++++++.+|+... .++|..|.. +++++..+.... .....|..++++++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-----------------~~g~~p~~i~~~~~ 97 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-----------------SGGSSPCHIAVDPD 97 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-----------------ESSSCEEEEEECTT
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-----------------cCCCCcEEEEEecC
Confidence 4458999999999999997755 467766654 445666553211 13346889999997
Q ss_pred CCeEEEEeCCCe-EEEEeCCC-CeEEEcccc---------cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290 107 TCDLYIADAYFG-LMVVGPNG-GQAQQLASS---------AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA 175 (343)
Q Consensus 107 ~~~l~v~~~~~g-i~~~d~~~-~~~~~~~~~---------~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~ 175 (343)
++.||+++...| +..++++. |........ ...+...+++.+.++|....+|+++.+
T Consensus 98 g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------------- 164 (345)
T PF10282_consen 98 GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------------- 164 (345)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-------------
T ss_pred CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-------------
Confidence 778999976555 66666543 554433111 112334678999999943458888876
Q ss_pred ecCCCceEEEEeCC--CCceEE----eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC-ccccccceeeecCC--
Q 019290 176 TGDRSGRLLKYDPL--KKNVTV----MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG-ERTTYTPQLFAEMP-- 246 (343)
Q Consensus 176 ~~~~~~~v~~~d~~--~~~~~~----~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~-- 246 (343)
..+|+.|+.+ ++++.. -......|..++|+++++.+|+++...+.|.+|+++. ...+.....+...+
T Consensus 165 ----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 165 ----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp ----TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred ----CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 4566666554 333432 1345677999999999999999999999999999882 22212222222111
Q ss_pred ----CCCCceeeCCCCCE-EEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCCCCccCCcee
Q 019290 247 ----RFPDNIKSDSKGEF-WIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNEGNTLNSVSE 320 (343)
Q Consensus 247 ----~~p~~i~~d~~G~l-wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~~~~ 320 (343)
..+.++++++||+. |++... .+.+ .++.+|+. |++...-..+.+ -..+..
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~-~~sI---------------------~vf~~d~~~g~l~~~~~~~~~--G~~Pr~ 296 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRG-SNSI---------------------SVFDLDPATGTLTLVQTVPTG--GKFPRH 296 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECT-TTEE---------------------EEEEECTTTTTEEEEEEEEES--SSSEEE
T ss_pred ccccCCceeEEEecCCCEEEEEecc-CCEE---------------------EEEEEecCCCceEEEEEEeCC--CCCccE
Confidence 13566899999975 555544 5433 66677654 555433222222 123444
Q ss_pred EEE--eCCEEEEecCCCCeEEEEc
Q 019290 321 VQE--YGEYLYTGSSVQPYVVVIK 342 (343)
Q Consensus 321 ~~~--~~g~l~i~~~~~~~i~~~~ 342 (343)
+.. ++..||+++..++.|.+|+
T Consensus 297 ~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 297 FAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCEEEEEecCCCeEEEEE
Confidence 444 4788999999999999875
No 10
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.59 E-value=1.9e-13 Score=118.92 Aligned_cols=188 Identities=23% Similarity=0.321 Sum_probs=130.0
Q ss_pred eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEe-CCCCeEEEEeCCcccccccceeeee
Q 019290 98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDID-PNTGIVYFTDSSIYFQRRQYFMSIA 175 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d-~~dg~l~v~~~~~~~~~~~~~~~~~ 175 (343)
+.|++++++++.||++|...+ |+++++++++.+.+.. ..+++++++ + +|++|+++..
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-------~~~~G~~~~~~-~g~l~v~~~~------------- 60 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-------PGPNGMAFDRP-DGRLYVADSG------------- 60 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-------SSEEEEEEECT-TSEEEEEETT-------------
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-------CCCceEEEEcc-CCEEEEEEcC-------------
Confidence 457888877899999987554 9999999887765321 227899999 6 6999998754
Q ss_pred ecCCCceEEEEeCCCCceEEeec------CCCCcceeEEecCCCEEEEEEcCC--------CeEEEEEccCcccccccee
Q 019290 176 TGDRSGRLLKYDPLKKNVTVMYN------GLSFPNGVALSNNNSFLLLAESAT--------LKILRFWLQGERTTYTPQL 241 (343)
Q Consensus 176 ~~~~~~~v~~~d~~~~~~~~~~~------~~~~~~~i~~~~d~~~lyv~~~~~--------~~i~~~~~~~~~~~~~~~~ 241 (343)
++..+|+++++++.+.. .+..+|+++++++|+ +|++++.. ++|++++.++ . ...
T Consensus 61 ------~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~----~-~~~ 128 (246)
T PF08450_consen 61 ------GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG----K-VTV 128 (246)
T ss_dssp ------CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS----E-EEE
T ss_pred ------ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC----e-EEE
Confidence 45666988888776543 345689999999987 99998764 6799998763 1 222
Q ss_pred eecCCCCCCceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECC--CCC-E--EEEeeCCCCCcc
Q 019290 242 FAEMPRFPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV--NGN-V--VDVLDGNEGNTL 315 (343)
Q Consensus 242 ~~~~~~~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~--~g~-~--~~~~~~~~~~~~ 315 (343)
....-..|+||+++++|+ ||+++.. .+.|++++. ++. . ...+...... .
T Consensus 129 ~~~~~~~pNGi~~s~dg~~lyv~ds~------------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~ 183 (246)
T PF08450_consen 129 VADGLGFPNGIAFSPDGKTLYVADSF------------------------NGRIWRFDLDADGGELSNRRVFIDFPGG-P 183 (246)
T ss_dssp EEEEESSEEEEEEETTSSEEEEEETT------------------------TTEEEEEEEETTTCCEEEEEEEEE-SSS-S
T ss_pred EecCcccccceEECCcchheeecccc------------------------cceeEEEeccccccceeeeeeEEEcCCC-C
Confidence 222223589999999996 7888776 347788875 344 2 1223222221 1
Q ss_pred CCceeEEEe-CCEEEEecCCCCeEEEEcC
Q 019290 316 NSVSEVQEY-GEYLYTGSSVQPYVVVIKA 343 (343)
Q Consensus 316 ~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 343 (343)
..+-.+..+ +|+||++....+.|.+|++
T Consensus 184 g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 184 GYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp CEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred cCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 234455555 8999999999999999985
No 11
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.56 E-value=1e-11 Score=112.81 Aligned_cols=256 Identities=16% Similarity=0.216 Sum_probs=149.1
Q ss_pred ccccccCCCCCCCceEEEcCCCCeeEEEe-cCCEEEEEEcC-CCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290 25 SYQQLQLPGVVGPESLAFDCNGEGPYVGV-SDGRILKWKAA-NSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK 102 (343)
Q Consensus 25 ~~~~~~~~~~~~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~ 102 (343)
.++.++.++ .|..++++++|+.+|++. ..++|..|+.+ ++.+..... ....+.|.+++
T Consensus 27 ~~~~~~~~~--~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~------------------~~~~~~p~~i~ 86 (330)
T PRK11028 27 LLQVVDVPG--QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE------------------SPLPGSPTHIS 86 (330)
T ss_pred eeeEEecCC--CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee------------------ecCCCCceEEE
Confidence 344444443 699999999999888764 46778777664 344443321 01223578999
Q ss_pred EeCCCCeEEEEeCCC-eEEEEeCCC-CeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCC
Q 019290 103 FNPVTCDLYIADAYF-GLMVVGPNG-GQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRS 180 (343)
Q Consensus 103 ~~~~~~~l~v~~~~~-gi~~~d~~~-~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~ 180 (343)
++++++.+|++.... .+..++.++ +........... ...++.++++++...+|+++.. .
T Consensus 87 ~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~ 147 (330)
T PRK11028 87 TDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLK-----------------E 147 (330)
T ss_pred ECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCC-----------------C
Confidence 999666788886544 477777653 222111111111 2457889999943357777654 4
Q ss_pred ceEEEEeCCC-CceEE------eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc-cccccceeeecCC------
Q 019290 181 GRLLKYDPLK-KNVTV------MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE-RTTYTPQLFAEMP------ 246 (343)
Q Consensus 181 ~~v~~~d~~~-~~~~~------~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~------ 246 (343)
+.|..||.++ +.+.. -......|..++++++++.+|+++...+.|.+|+++.. ..+.....+...+
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 5677777653 32211 11234668899999999999999888899999998732 1111111111111
Q ss_pred CCCCceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEe-eCCCCCccCCceeEEEe
Q 019290 247 RFPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVL-DGNEGNTLNSVSEVQEY 324 (343)
Q Consensus 247 ~~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~-~~~~~~~~~~~~~~~~~ 324 (343)
..+..+.++++|+ +|+++.. .+.+ .++.++.++...... ..+.+..... -.+..+
T Consensus 228 ~~~~~i~~~pdg~~lyv~~~~-~~~I---------------------~v~~i~~~~~~~~~~~~~~~~~~p~~-~~~~~d 284 (330)
T PRK11028 228 RWAADIHITPDGRHLYACDRT-ASLI---------------------SVFSVSEDGSVLSFEGHQPTETQPRG-FNIDHS 284 (330)
T ss_pred ccceeEEECCCCCEEEEecCC-CCeE---------------------EEEEEeCCCCeEEEeEEEeccccCCc-eEECCC
Confidence 1233578899986 6666433 2322 455556665432222 1121211111 122345
Q ss_pred CCEEEEecCCCCeEEEEc
Q 019290 325 GEYLYTGSSVQPYVVVIK 342 (343)
Q Consensus 325 ~g~l~i~~~~~~~i~~~~ 342 (343)
+..||+++..++.|.+|+
T Consensus 285 g~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 285 GKYLIAAGQKSHHISVYE 302 (330)
T ss_pred CCEEEEEEccCCcEEEEE
Confidence 778999998888888774
No 12
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=7.8e-11 Score=102.42 Aligned_cols=253 Identities=15% Similarity=0.179 Sum_probs=160.5
Q ss_pred CCCCceEEEcCCCCeeEEEecC---CE--EEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC
Q 019290 34 VVGPESLAFDCNGEGPYVGVSD---GR--ILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC 108 (343)
Q Consensus 34 ~~~p~~l~~d~~g~~l~~~~~~---g~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~ 108 (343)
..+|.-|++++++++||+.... |+ -|++|++.++++.+.... .....|..+++++++.
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-----------------~~g~~p~yvsvd~~g~ 101 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-----------------LPGSPPCYVSVDEDGR 101 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-----------------cCCCCCeEEEECCCCC
Confidence 3489999999999999976543 44 456677767776653211 1222358899998444
Q ss_pred eEEEEeCCCe-EEEEeCCC-CeEEEcccc--------cCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeeeeec
Q 019290 109 DLYIADAYFG-LMVVGPNG-GQAQQLASS--------AGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSIATG 177 (343)
Q Consensus 109 ~l~v~~~~~g-i~~~d~~~-~~~~~~~~~--------~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~~~~ 177 (343)
.|+++....| |.++-.+. |.+....+. .+.+...+++...++| ++ .+++.|.+
T Consensus 102 ~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG--------------- 165 (346)
T COG2706 102 FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLG--------------- 165 (346)
T ss_pred EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecC---------------
Confidence 6777765555 44444422 443332111 1122234577888999 46 57776765
Q ss_pred CCCceEEEEeCCCCceEEe----ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc-cccccceeeecCC-CC---
Q 019290 178 DRSGRLLKYDPLKKNVTVM----YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE-RTTYTPQLFAEMP-RF--- 248 (343)
Q Consensus 178 ~~~~~v~~~d~~~~~~~~~----~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~-~~--- 248 (343)
..+|+.|+.+.|+.... .....+|.=|+|+|+++..|+...-+++|.++..+.. +.+.+.+.+..++ .+
T Consensus 166 --~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 166 --TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT 243 (346)
T ss_pred --CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence 56777777766665432 3556778999999999999999889999999998764 2223333332222 11
Q ss_pred --CCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEe-eCCCCCccCCceeEEEeC
Q 019290 249 --PDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVL-DGNEGNTLNSVSEVQEYG 325 (343)
Q Consensus 249 --p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~ 325 (343)
...|.++++|++..+++...+.+ .++++|+++..+..+ ..+.+.....-..+...+
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI---------------------~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g 302 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSI---------------------AVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG 302 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeE---------------------EEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC
Confidence 12267899999888877756655 888999986554443 333332212222223336
Q ss_pred CEEEEecCCCCeEEEEc
Q 019290 326 EYLYTGSSVQPYVVVIK 342 (343)
Q Consensus 326 g~l~i~~~~~~~i~~~~ 342 (343)
+-|++++-.++.|.+|.
T Consensus 303 ~~Liaa~q~sd~i~vf~ 319 (346)
T COG2706 303 RFLIAANQKSDNITVFE 319 (346)
T ss_pred CEEEEEccCCCcEEEEE
Confidence 67999999999998874
No 13
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.45 E-value=2.9e-13 Score=96.18 Aligned_cols=88 Identities=55% Similarity=1.004 Sum_probs=71.9
Q ss_pred ceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCe
Q 019290 145 NDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLK 224 (343)
Q Consensus 145 ~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~ 224 (343)
|++++++++|.+||++.+..+...++.+.+.++.+.|+|++|||.+++.+.+..++..|||+++++|+..++++++...+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 57889984499999999999999999888888888999999999999999999999999999999999999999999999
Q ss_pred EEEEEccC
Q 019290 225 ILRFWLQG 232 (343)
Q Consensus 225 i~~~~~~~ 232 (343)
|.+|.+.|
T Consensus 81 i~rywl~G 88 (89)
T PF03088_consen 81 ILRYWLKG 88 (89)
T ss_dssp EEEEESSS
T ss_pred EEEEEEeC
Confidence 99999876
No 14
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.43 E-value=1.2e-10 Score=106.31 Aligned_cols=214 Identities=21% Similarity=0.283 Sum_probs=127.0
Q ss_pred CCCCCceEEEcCCCCeeEEEe-cCCEEEEEEcCC-CCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE
Q 019290 33 GVVGPESLAFDCNGEGPYVGV-SDGRILKWKAAN-SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL 110 (343)
Q Consensus 33 ~~~~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l 110 (343)
....|..++++++|+.+|++. .+|.+..|+.+. +............ |.+..........||.+.++++++.+
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~------g~g~~~~rq~~~h~H~v~~~pdg~~v 158 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHE------GSGPNPDRQEGPHPHQVVFSPDGRFV 158 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESE------EEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccC------CCCCcccccccccceeEEECCCCCEE
Confidence 345799999999999888664 577787776654 3333321100000 00000011334568999999966789
Q ss_pred EEEeCC-CeEEEEeCCCC--eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce--EEE
Q 019290 111 YIADAY-FGLMVVGPNGG--QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR--LLK 185 (343)
Q Consensus 111 ~v~~~~-~gi~~~d~~~~--~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~--v~~ 185 (343)
|+++-+ +.|+.|+.+.. ++...... .......|..++++++...+|+.+.. .+. ++.
T Consensus 159 ~v~dlG~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~-----------------s~~v~v~~ 220 (345)
T PF10282_consen 159 YVPDLGADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL-----------------SNTVSVFD 220 (345)
T ss_dssp EEEETTTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT-----------------TTEEEEEE
T ss_pred EEEecCCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC-----------------CCcEEEEe
Confidence 999865 45777766543 35442211 22234679999999943468887643 334 455
Q ss_pred EeCCCCceEEee------cC---CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc-cccccceeeecCCCCCCceeeC
Q 019290 186 YDPLKKNVTVMY------NG---LSFPNGVALSNNNSFLLLAESATLKILRFWLQGE-RTTYTPQLFAEMPRFPDNIKSD 255 (343)
Q Consensus 186 ~d~~~~~~~~~~------~~---~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~p~~i~~d 255 (343)
++..++.++.+. .+ ...+.+|++++||++||+++...+.|..|+++.. +.+.....+......|.++++|
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s 300 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS 300 (345)
T ss_dssp EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-
T ss_pred ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe
Confidence 554456554322 11 1257889999999999999999999999999643 2222222222223359999999
Q ss_pred CCCCE-EEEeccCCCcc
Q 019290 256 SKGEF-WIAMNSARGKI 271 (343)
Q Consensus 256 ~~G~l-wi~~~~~~~~~ 271 (343)
++|+. |++... .+.+
T Consensus 301 ~~g~~l~Va~~~-s~~v 316 (345)
T PF10282_consen 301 PDGRYLYVANQD-SNTV 316 (345)
T ss_dssp TTSSEEEEEETT-TTEE
T ss_pred CCCCEEEEEecC-CCeE
Confidence 99975 555444 4433
No 15
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.43 E-value=1.6e-10 Score=106.38 Aligned_cols=172 Identities=21% Similarity=0.325 Sum_probs=111.4
Q ss_pred CCCCCCceEEEcCCCCeeEEEec------------C-CEEEEEEcCC--CC---eEEeeecCCCccccccCCCCCcccCC
Q 019290 32 PGVVGPESLAFDCNGEGPYVGVS------------D-GRILKWKAAN--SG---WTEFATTAPHRAREICDGSTNTTLEP 93 (343)
Q Consensus 32 ~~~~~p~~l~~d~~g~~l~~~~~------------~-g~i~~~d~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (343)
|.+.+|..|++|++|+ +|++.. . ++|++++..+ +. .+.|. .
T Consensus 11 p~~~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa--------------------~ 69 (367)
T TIGR02604 11 PLLRNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA--------------------E 69 (367)
T ss_pred CccCCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee--------------------c
Confidence 6678999999999999 665532 2 3898887643 22 23332 3
Q ss_pred CcCCeeeEEEeCCCCeEEEEeCCCeEEEE-eCCC-----CeEEEcccccCCC---CccCcceeEEeCCCCeEEEEeCCcc
Q 019290 94 LCGRPLGIKFNPVTCDLYIADAYFGLMVV-GPNG-----GQAQQLASSAGGI---PFRFTNDLDIDPNTGIVYFTDSSIY 164 (343)
Q Consensus 94 ~~~~p~gi~~~~~~~~l~v~~~~~gi~~~-d~~~-----~~~~~~~~~~~~~---~~~~~~~i~~d~~dg~l~v~~~~~~ 164 (343)
....|.||++.+ ++ |||++ ...|+++ +.+. ++.+.+....... ....++++++++ ||.||++.....
T Consensus 70 ~l~~p~Gi~~~~-~G-lyV~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~ 145 (367)
T TIGR02604 70 ELSMVTGLAVAV-GG-VYVAT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTL 145 (367)
T ss_pred CCCCccceeEec-CC-EEEeC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCC
Confidence 345689999997 66 99984 5678877 4432 1334343322211 245688999999 699999876421
Q ss_pred cccc--cceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEE
Q 019290 165 FQRR--QYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFW 229 (343)
Q Consensus 165 ~~~~--~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~ 229 (343)
.... ............+.++|+++++++.+.+..++..+++++++++|+ +|+++.......++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i~ 211 (367)
T TIGR02604 146 ASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRVT 211 (367)
T ss_pred CceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEEc
Confidence 1000 000000011124689999999888888888889999999999876 788876555555443
No 16
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=6.6e-10 Score=96.73 Aligned_cols=234 Identities=17% Similarity=0.241 Sum_probs=148.7
Q ss_pred ccccccCCCCCCCceEEEcCCCCeeEEE-ecCCEEEEEEcCC-CCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290 25 SYQQLQLPGVVGPESLAFDCNGEGPYVG-VSDGRILKWKAAN-SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK 102 (343)
Q Consensus 25 ~~~~~~~~~~~~p~~l~~d~~g~~l~~~-~~~g~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~ 102 (343)
++-+..+++ ..|-.+++|++|+.++++ .+.|.|..+..+. +..........+. +.+.. .......++...
T Consensus 80 ~ln~~~~~g-~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~------g~~p~-~rQ~~~h~H~a~ 151 (346)
T COG2706 80 FLNRQTLPG-SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHT------GSGPH-ERQESPHVHSAN 151 (346)
T ss_pred EeeccccCC-CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecC------CCCCC-ccccCCccceee
Confidence 344445554 356999999999988865 4556666665433 3322221100000 11111 112233467788
Q ss_pred EeCCCCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCC
Q 019290 103 FNPVTCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRS 180 (343)
Q Consensus 103 ~~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~ 180 (343)
++++++.|++.|-+ +.|+.|+.+.|+.+..... .-.+...|..|++.|+ ++ .|+.+. .+..
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~-~v~~G~GPRHi~FHpn-~k~aY~v~E---------------L~st 214 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA-EVKPGAGPRHIVFHPN-GKYAYLVNE---------------LNST 214 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCcccccccc-ccCCCCCcceEEEcCC-CcEEEEEec---------------cCCE
Confidence 99955567777644 5688888888877665322 2245578999999995 65 565432 2224
Q ss_pred ceEEEEeCCCCceEEeec------C---CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCC-CCC
Q 019290 181 GRLLKYDPLKKNVTVMYN------G---LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPR-FPD 250 (343)
Q Consensus 181 ~~v~~~d~~~~~~~~~~~------~---~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~p~ 250 (343)
--++.|++..++++.+.. + -.....|.+++||+.||+++...+.|+.|.++.+...-+........+ .|+
T Consensus 215 V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR 294 (346)
T COG2706 215 VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPR 294 (346)
T ss_pred EEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCc
Confidence 457788877788776532 2 233567889999999999999999999999886432011111222334 599
Q ss_pred ceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCEE
Q 019290 251 NIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVV 304 (343)
Q Consensus 251 ~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~ 304 (343)
.+.+++.|++.++.+.+.+.+ .|+++|++ |.+.
T Consensus 295 ~F~i~~~g~~Liaa~q~sd~i---------------------~vf~~d~~TG~L~ 328 (346)
T COG2706 295 DFNINPSGRFLIAANQKSDNI---------------------TVFERDKETGRLT 328 (346)
T ss_pred cceeCCCCCEEEEEccCCCcE---------------------EEEEEcCCCceEE
Confidence 999999999999988867755 89999985 5443
No 17
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.35 E-value=1.1e-09 Score=99.57 Aligned_cols=193 Identities=8% Similarity=0.074 Sum_probs=116.8
Q ss_pred CCceEEEcCCCCeeEEEe-cCCEEEEEEcCC-CCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290 36 GPESLAFDCNGEGPYVGV-SDGRILKWKAAN-SGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI 112 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v 112 (343)
.|..++++++|+.+|++. .++.|..|+.++ +... .... ......|++++++++++.+|+
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~------------------~~~~~~~~~~~~~p~g~~l~v 142 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI------------------IEGLEGCHSANIDPDNRTLWV 142 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee------------------ccCCCcccEeEeCCCCCEEEE
Confidence 689999999999888654 477788887653 2111 1100 011235788999986668888
Q ss_pred EeCCCe-EEEEeCCC-CeEEEcc-cccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290 113 ADAYFG-LMVVGPNG-GQAQQLA-SSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL 189 (343)
Q Consensus 113 ~~~~~g-i~~~d~~~-~~~~~~~-~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 189 (343)
++...+ |..+|.++ +.+.... ..........|+.++++++...+|+++.. .+.|..|+.+
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----------------~~~v~v~~~~ 205 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----------------NSSVDVWQLK 205 (330)
T ss_pred eeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----------------CCEEEEEEEe
Confidence 876644 88888765 3332110 00011123568899999943447777653 3455555443
Q ss_pred --CCceEEeec------C---CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec--CCCCCCceeeCC
Q 019290 190 --KKNVTVMYN------G---LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE--MPRFPDNIKSDS 256 (343)
Q Consensus 190 --~~~~~~~~~------~---~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~ 256 (343)
+++.+.+.. . ...+.+++++|+++.+|+++...+.|.+|+++.+.. ..+.... ....|.++.+++
T Consensus 206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~--~~~~~~~~~~~~~p~~~~~~~ 283 (330)
T PRK11028 206 DPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS--VLSFEGHQPTETQPRGFNIDH 283 (330)
T ss_pred CCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC--eEEEeEEEeccccCCceEECC
Confidence 444432211 1 112346889999999999987789999999864321 1111211 223588999999
Q ss_pred CCC-EEEEec
Q 019290 257 KGE-FWIAMN 265 (343)
Q Consensus 257 ~G~-lwi~~~ 265 (343)
+|+ ||++..
T Consensus 284 dg~~l~va~~ 293 (330)
T PRK11028 284 SGKYLIAAGQ 293 (330)
T ss_pred CCCEEEEEEc
Confidence 995 455543
No 18
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.32 E-value=9.4e-09 Score=91.40 Aligned_cols=237 Identities=16% Similarity=0.109 Sum_probs=142.8
Q ss_pred CCceEEEcCCCCeeEE-EecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 36 GPESLAFDCNGEGPYV-GVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
.|.+++++++|..+|+ +..++.|+.||..+++..... .....+..++++++++.+|++.
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~l~~~~ 91 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL--------------------PSGPDPELFALHPNGKILYIAN 91 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec--------------------cCCCCccEEEECCCCCEEEEEc
Confidence 5789999999997764 456788999998876543211 1112245678888555677775
Q ss_pred CCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290 115 AYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV 193 (343)
Q Consensus 115 ~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 193 (343)
... .+..+|.++++....... . ..+.++++++ +|.++++.... ...+..+|..+++.
T Consensus 92 ~~~~~l~~~d~~~~~~~~~~~~--~---~~~~~~~~~~-dg~~l~~~~~~----------------~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 92 EDDNLVTVIDIETRKVLAEIPV--G---VEPEGMAVSP-DGKIVVNTSET----------------TNMAHFIDTKTYEI 149 (300)
T ss_pred CCCCeEEEEECCCCeEEeEeeC--C---CCcceEEECC-CCCEEEEEecC----------------CCeEEEEeCCCCeE
Confidence 433 488999987653322111 1 2367899999 58776644320 22355678776655
Q ss_pred EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec----CCCCCCceeeCCCCCE-EEEeccCC
Q 019290 194 TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE----MPRFPDNIKSDSKGEF-WIAMNSAR 268 (343)
Q Consensus 194 ~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~p~~i~~d~~G~l-wi~~~~~~ 268 (343)
.........+..++++++++.++++....+.|..|++.+.........-.. ....|.+++++++|+. |++...
T Consensus 150 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~-- 227 (300)
T TIGR03866 150 VDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP-- 227 (300)
T ss_pred EEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC--
Confidence 332222345678899999998888766678999999875322111110000 1113557888999975 665543
Q ss_pred CccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCCCCccCCceeEE--EeCCEEEEecCCCCeEEEEcC
Q 019290 269 GKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNEGNTLNSVSEVQ--EYGEYLYTGSSVQPYVVVIKA 343 (343)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~~~~~~--~~~g~l~i~~~~~~~i~~~~~ 343 (343)
...+..+|.+ ++........ . .+..+. +++..||+++..++.|.+++.
T Consensus 228 ----------------------~~~i~v~d~~~~~~~~~~~~~-~----~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 228 ----------------------ANRVAVVDAKTYEVLDYLLVG-Q----RVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred ----------------------CCeEEEEECCCCcEEEEEEeC-C----CcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 2356677764 5544443321 1 122222 345678887777888888763
No 19
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.22 E-value=8.9e-09 Score=91.05 Aligned_cols=193 Identities=19% Similarity=0.185 Sum_probs=122.6
Q ss_pred eeeEEEeCCCCeEEEEeCCC-------------eEEEEeCCCCeEEEccccc--CCCCccCcceeEEeCCC-----CeEE
Q 019290 98 PLGIKFNPVTCDLYIADAYF-------------GLMVVGPNGGQAQQLASSA--GGIPFRFTNDLDIDPNT-----GIVY 157 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~~-------------gi~~~d~~~~~~~~~~~~~--~~~~~~~~~~i~~d~~d-----g~l~ 157 (343)
+.++.+|+ .++|||.|++. .|+.+|++++++....... ...+...++++++|..+ +.+|
T Consensus 3 V~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 3 VQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred ccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 46788898 99999998652 4999999998764433222 12235788999999732 4799
Q ss_pred EEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecC--------------------CCCcceeEEec---CCCE
Q 019290 158 FTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNG--------------------LSFPNGVALSN---NNSF 214 (343)
Q Consensus 158 v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--------------------~~~~~~i~~~~---d~~~ 214 (343)
++|.+ ..+|..||..+++..++..+ ..+..|++.++ +++.
T Consensus 82 ItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~ 144 (287)
T PF03022_consen 82 ITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRW 144 (287)
T ss_dssp EEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-E
T ss_pred EeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccE
Confidence 99986 44688888877765544321 11246677765 7789
Q ss_pred EEEEEcCCCeEEEEEccC--cccc-------ccceeeecCCCCCCceeeCCCCCEEEEeccCCCccccccccccccccCC
Q 019290 215 LLLAESATLKILRFWLQG--ERTT-------YTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAK 285 (343)
Q Consensus 215 lyv~~~~~~~i~~~~~~~--~~~~-------~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~ 285 (343)
||+....+..+|+....- +... ...+.+....+..++++.|++|+||++...
T Consensus 145 LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~------------------- 205 (287)
T PF03022_consen 145 LYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVE------------------- 205 (287)
T ss_dssp EEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECC-------------------
T ss_pred EEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCC-------------------
Confidence 999988788899987531 1110 112222222234678999999999999987
Q ss_pred CcccCCCeEEEECCCC-----CEEEEeeCCCCCccCCceeEEEeC---CEEEEecCC
Q 019290 286 PWFLRDPVGVKFDVNG-----NVVDVLDGNEGNTLNSVSEVQEYG---EYLYTGSSV 334 (343)
Q Consensus 286 ~~~~~~~~v~~~d~~g-----~~~~~~~~~~~~~~~~~~~~~~~~---g~l~i~~~~ 334 (343)
.++|.+.++++ +....+.+++ ....+..+..+. |+||+.+..
T Consensus 206 -----~~aI~~w~~~~~~~~~~~~~l~~d~~--~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 206 -----QNAIGCWDPDGPYTPENFEILAQDPR--TLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp -----CTEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-T--TS-EEEEE-S
T ss_pred -----CCeEEEEeCCCCcCccchheeEEcCc--eeeccceeeeccccCceEEEEECc
Confidence 56999999987 4444455443 356677766655 999997643
No 20
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.21 E-value=6.8e-08 Score=85.83 Aligned_cols=172 Identities=16% Similarity=0.108 Sum_probs=103.7
Q ss_pred CeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC-eEEEEeCC
Q 019290 47 EGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF-GLMVVGPN 125 (343)
Q Consensus 47 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~-gi~~~d~~ 125 (343)
++++++..++.+..||..+++..... .....+.+++++++++.+|++.... .++.+|.+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~--------------------~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTF--------------------PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEE--------------------ECCCCCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 43446677889999998776533221 1112356788988444577765444 48899998
Q ss_pred CCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcc
Q 019290 126 GGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPN 204 (343)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 204 (343)
+++........ ..+..+++++. ++ +|++... .+.|..+|..+++..........+.
T Consensus 62 ~~~~~~~~~~~-----~~~~~~~~~~~-g~~l~~~~~~-----------------~~~l~~~d~~~~~~~~~~~~~~~~~ 118 (300)
T TIGR03866 62 TGEVIGTLPSG-----PDPELFALHPN-GKILYIANED-----------------DNLVTVIDIETRKVLAEIPVGVEPE 118 (300)
T ss_pred CCcEEEeccCC-----CCccEEEECCC-CCEEEEEcCC-----------------CCeEEEEECCCCeEEeEeeCCCCcc
Confidence 87654422211 22456788884 55 6665432 4578889987655433233234578
Q ss_pred eeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEE-EEec
Q 019290 205 GVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFW-IAMN 265 (343)
Q Consensus 205 ~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lw-i~~~ 265 (343)
+++++++++.++++......++.++..+. +..........|..+.++++|+.+ ++..
T Consensus 119 ~~~~~~dg~~l~~~~~~~~~~~~~d~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 119 GMAVSPDGKIVVNTSETTNMAHFIDTKTY----EIVDNVLVDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred eEEECCCCCEEEEEecCCCeEEEEeCCCC----eEEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence 89999999987776554455666776432 111111122346778889998754 5543
No 21
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=99.15 E-value=2e-08 Score=86.28 Aligned_cols=203 Identities=16% Similarity=0.196 Sum_probs=112.4
Q ss_pred cccccCCCCC-CCceEEEcCCCCeeE-EEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE
Q 019290 26 YQQLQLPGVV-GPESLAFDCNGEGPY-VGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF 103 (343)
Q Consensus 26 ~~~~~~~~~~-~p~~l~~d~~g~~l~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~ 103 (343)
++..++|++. .+.+|+++++.+.|| +....+.|+.++.++.-...+.- ...+-+.||++
T Consensus 12 i~~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l-------------------~g~~D~EgI~y 72 (248)
T PF06977_consen 12 IEAKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPL-------------------DGFGDYEGITY 72 (248)
T ss_dssp EEEEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE--------------------SS-SSEEEEEE
T ss_pred EeeeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeC-------------------CCCCCceeEEE
Confidence 4456788655 499999999866577 45567889999987654444421 22445789999
Q ss_pred eCCCCeEEEEeCC-CeEEEEeC--CCCe-----EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290 104 NPVTCDLYIADAY-FGLMVVGP--NGGQ-----AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA 175 (343)
Q Consensus 104 ~~~~~~l~v~~~~-~gi~~~d~--~~~~-----~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~ 175 (343)
.. ++.+.+++.. ..++.++. .+.. ++.+............-+++.|+..+++|++-..
T Consensus 73 ~g-~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~------------- 138 (248)
T PF06977_consen 73 LG-NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER------------- 138 (248)
T ss_dssp -S-TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES-------------
T ss_pred EC-CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC-------------
Confidence 86 7777777643 44777665 2221 1222111112223457899999966888886432
Q ss_pred ecCCCceEEEEeC--CCCceEEee--------cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee--
Q 019290 176 TGDRSGRLLKYDP--LKKNVTVMY--------NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA-- 243 (343)
Q Consensus 176 ~~~~~~~v~~~d~--~~~~~~~~~--------~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-- 243 (343)
....|+.++. ......... .....+.++++++..+.||+.+.....|..++.+|.-. .......
T Consensus 139 ---~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~-~~~~L~~g~ 214 (248)
T PF06977_consen 139 ---KPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVV-SSLSLDRGF 214 (248)
T ss_dssp ---SSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EE-EEEE-STTG
T ss_pred ---CChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEE-EEEEeCCcc
Confidence 1345777764 212221111 12345889999999999999999999999999766322 1111111
Q ss_pred ----c-CCCCCCceeeCCCCCEEEEecc
Q 019290 244 ----E-MPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 244 ----~-~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
+ .+ .|.|+++|++|+|||++-.
T Consensus 215 ~gl~~~~~-QpEGIa~d~~G~LYIvsEp 241 (248)
T PF06977_consen 215 HGLSKDIP-QPEGIAFDPDGNLYIVSEP 241 (248)
T ss_dssp GG-SS----SEEEEEE-TT--EEEEETT
T ss_pred cCcccccC-CccEEEECCCCCEEEEcCC
Confidence 0 12 4899999999999999853
No 22
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=4.8e-09 Score=93.11 Aligned_cols=151 Identities=15% Similarity=0.217 Sum_probs=99.6
Q ss_pred CCCCceEEEcCCCCeeEEEecC------------CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290 34 VVGPESLAFDCNGEGPYVGVSD------------GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI 101 (343)
Q Consensus 34 ~~~p~~l~~d~~g~~l~~~~~~------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi 101 (343)
...|.++.++++|. +|++++. |.||++++.++....+. .....|+||
T Consensus 110 ~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~--------------------~~~~~~NGl 168 (307)
T COG3386 110 LNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD--------------------DDLTIPNGL 168 (307)
T ss_pred cCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCEEEeec--------------------CcEEecCce
Confidence 34699999999999 6766544 46999998554333321 225578999
Q ss_pred EEeCCCCeEEEEeCCC-eEEEEeCCC--CeEE---EcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290 102 KFNPVTCDLYIADAYF-GLMVVGPNG--GQAQ---QLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA 175 (343)
Q Consensus 102 ~~~~~~~~l~v~~~~~-gi~~~d~~~--~~~~---~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~ 175 (343)
++++++..+|++++.. .|++++.+- +.+. ....... ....|.++++|. +|.+|++...
T Consensus 169 a~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~--~~G~PDG~~vDa-dG~lw~~a~~------------- 232 (307)
T COG3386 169 AFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE--EPGLPDGMAVDA-DGNLWVAAVW------------- 232 (307)
T ss_pred EECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC--CCCCCCceEEeC-CCCEEEeccc-------------
Confidence 9999666999999874 499987752 2111 1111111 124588999999 6999973322
Q ss_pred ecCCCceEEEEeCCCCceEEeecCCCCcceeEEe-cCCCEEEEEEcCCCe
Q 019290 176 TGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALS-NNNSFLLLAESATLK 224 (343)
Q Consensus 176 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~-~d~~~lyv~~~~~~~ 224 (343)
..++|.+|++++.....+.-....+...+|. ++.++||++....+.
T Consensus 233 ---~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 233 ---GGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred ---CCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCCC
Confidence 1347999999944444444333566667764 567899998776533
No 23
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.14 E-value=2.1e-09 Score=98.79 Aligned_cols=227 Identities=20% Similarity=0.227 Sum_probs=134.1
Q ss_pred CCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 35 VGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 35 ~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
.....+++|.+|. +|+++++| +++||+.+++.-+....+ ..-.++.+..+. +++|||+
T Consensus 165 ~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~------------------~dk~I~al~~d~-qg~LWVG- 222 (671)
T COG3292 165 TPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPP------------------LDKAINALIADV-QGRLWVG- 222 (671)
T ss_pred ccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCc------------------chhhHHHHHHHh-cCcEEEE-
Confidence 3567899999998 99998888 999999887655442111 001234566776 8999999
Q ss_pred CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290 115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT 194 (343)
Q Consensus 115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 194 (343)
+..|++..+.++-.+..... ..+...+.-+..|. +|.+|+++.. +++|+......+.
T Consensus 223 TdqGv~~~e~~G~~~sn~~~---~lp~~~I~ll~qD~-qG~lWiGTen-------------------Gl~r~~l~rq~Lq 279 (671)
T COG3292 223 TDQGVYLQEAEGWRASNWGP---MLPSGNILLLVQDA-QGELWIGTEN-------------------GLWRTRLPRQGLQ 279 (671)
T ss_pred eccceEEEchhhccccccCC---CCcchheeeeeccc-CCCEEEeecc-------------------cceeEecCCCCcc
Confidence 57899999998633332222 22234567778888 5999997642 4666554333322
Q ss_pred Ee----ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC----------ccc-----------c------cc-ceee
Q 019290 195 VM----YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG----------ERT-----------T------YT-PQLF 242 (343)
Q Consensus 195 ~~----~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~----------~~~-----------~------~~-~~~~ 242 (343)
.. ..+.+..+.+..+.+|. ||+.. .+++++|.... ++. + .+ .-.+
T Consensus 280 ~~~~~~~l~~S~vnsL~~D~dGs-LWv~t--~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L 356 (671)
T COG3292 280 IPLSKMHLGVSTVNSLWLDTDGS-LWVGT--YGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGEL 356 (671)
T ss_pred ccccccCCccccccceeeccCCC-Eeeec--cCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceE
Confidence 11 12334567777777775 66653 34566655331 000 0 00 0000
Q ss_pred ecCCC------------CCCc---eeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEe
Q 019290 243 AEMPR------------FPDN---IKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVL 307 (343)
Q Consensus 243 ~~~~~------------~p~~---i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~ 307 (343)
...++ .+.+ .++|++|.+|+++.. .++.+++.+. .=..+
T Consensus 357 ~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q-------------------------~GLsrl~n~n-~~avl 410 (671)
T COG3292 357 MVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQ-------------------------NGLSRLDNKN-EWAVL 410 (671)
T ss_pred EEecCCCCcEEEEeeeccccccchhhhccCCcEEEEecc-------------------------cchhhhccCC-ccccc
Confidence 00000 0112 235778888888765 3677786644 11222
Q ss_pred eCCCCCccCCceeEEEe-CCEEEEecCCC
Q 019290 308 DGNEGNTLNSVSEVQEY-GEYLYTGSSVQ 335 (343)
Q Consensus 308 ~~~~~~~~~~~~~~~~~-~g~l~i~~~~~ 335 (343)
....+.....+..+.++ +++||||+.+.
T Consensus 411 de~agl~ss~V~aived~dnsLWIGTs~G 439 (671)
T COG3292 411 DEDAGLPSSEVSAIVEDPDNSLWIGTSGG 439 (671)
T ss_pred ccccCCcccceeeeeecCCCCEEEeccCC
Confidence 33344556678888888 78899999875
No 24
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.09 E-value=2.8e-08 Score=98.61 Aligned_cols=205 Identities=19% Similarity=0.245 Sum_probs=128.1
Q ss_pred CCCceEEEcC-CCCeeEEEecCCEEEEEEc-CC----CCeEEeeecCCC--ccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290 35 VGPESLAFDC-NGEGPYVGVSDGRILKWKA-AN----SGWTEFATTAPH--RAREICDGSTNTTLEPLCGRPLGIKFNPV 106 (343)
Q Consensus 35 ~~p~~l~~d~-~g~~l~~~~~~g~i~~~d~-~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~gi~~~~~ 106 (343)
++-..|+.+| +|.++..+....+|+++.. +. ..+..++..... +.-..| |.+..........|.||++++
T Consensus 407 sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desC-GDGalA~dA~L~~PkGIa~dk- 484 (1899)
T KOG4659|consen 407 SHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESC-GDGALAQDAQLIFPKGIAFDK- 484 (1899)
T ss_pred cceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCcccccccc-CcchhcccceeccCCceeEcc-
Confidence 3456788898 6884445667778888742 11 223344333221 111225 555566666777899999999
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeEEEcccc---------------cCCCCccCcceeEEeCCCCeEEEEeCCcccccccce
Q 019290 107 TCDLYIADAYFGLMVVGPNGGQAQQLASS---------------AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYF 171 (343)
Q Consensus 107 ~~~l~v~~~~~gi~~~d~~~~~~~~~~~~---------------~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~ 171 (343)
.|.||++| +..|.++|.. |-+..+... .....+.+|.+++++|-|+.+++-|..
T Consensus 485 ~g~lYfaD-~t~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n--------- 553 (1899)
T KOG4659|consen 485 MGNLYFAD-GTRIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN--------- 553 (1899)
T ss_pred CCcEEEec-ccEEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc---------
Confidence 99999996 6779999875 444444211 112245789999999988999997755
Q ss_pred eeeeecCCCceEEEEeCCCCceEEee---------------------cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290 172 MSIATGDRSGRLLKYDPLKKNVTVMY---------------------NGLSFPNGVALSNNNSFLLLAESATLKILRFWL 230 (343)
Q Consensus 172 ~~~~~~~~~~~v~~~d~~~~~~~~~~---------------------~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~ 230 (343)
-|+++++. +.++.+. ..+..+..|++.++|. ||++++.+.+|-+...
T Consensus 554 ----------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~ 621 (1899)
T KOG4659|consen 554 ----------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRK 621 (1899)
T ss_pred ----------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEE
Confidence 35555543 2332211 1133468899999885 9999998877766542
Q ss_pred cCccccccceeeec--------------------------CCCCCCceeeCCCCCEEEEecc
Q 019290 231 QGERTTYTPQLFAE--------------------------MPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 231 ~~~~~~~~~~~~~~--------------------------~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
-+.. +++.+++. .-..|..+++.|||.++|++..
T Consensus 622 ~~td--g~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~g 681 (1899)
T KOG4659|consen 622 LSTD--GTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSG 681 (1899)
T ss_pred eccC--ceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCC
Confidence 2100 11111110 0013777899999999999875
No 25
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.06 E-value=2.3e-08 Score=90.59 Aligned_cols=168 Identities=22% Similarity=0.248 Sum_probs=89.9
Q ss_pred CCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC---CCCeEE
Q 019290 35 VGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP---VTCDLY 111 (343)
Q Consensus 35 ~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~---~~~~l~ 111 (343)
..|.+|++.++|+ +|++...|+|+.++.++.....+..... ..........|+++++ .++.||
T Consensus 2 ~~P~~~a~~pdG~-l~v~e~~G~i~~~~~~g~~~~~v~~~~~-------------v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 2 NNPRSMAFLPDGR-LLVAERSGRIWVVDKDGSLKTPVADLPE-------------VFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SSEEEEEEETTSC-EEEEETTTEEEEEETTTEECEEEEE-TT-------------TBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CCceEEEEeCCCc-EEEEeCCceEEEEeCCCcCcceeccccc-------------ccccccCCcccceeccccCCCCEEE
Confidence 5799999999998 6777779999999944432233332110 1112233578999998 247899
Q ss_pred EEeCC---------CeEEEEeCCCC--e---EEEcccc-cC-CCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290 112 IADAY---------FGLMVVGPNGG--Q---AQQLASS-AG-GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA 175 (343)
Q Consensus 112 v~~~~---------~gi~~~d~~~~--~---~~~~~~~-~~-~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~ 175 (343)
+.-+. ..|.++....+ . .+.+... .. .........|++++ ||.||++.......- ....
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~----~~~~ 142 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDD----NAQD 142 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGG----GGCS
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcc----cccc
Confidence 88542 24777665433 2 2222211 11 12234567799999 699999865421100 0000
Q ss_pred ecCCCceEEEEeCCCC-------------ceEEeecCCCCcceeEEecCCCEEEEEEcC
Q 019290 176 TGDRSGRLLKYDPLKK-------------NVTVMYNGLSFPNGVALSNNNSFLLLAESA 221 (343)
Q Consensus 176 ~~~~~~~v~~~d~~~~-------------~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~ 221 (343)
.....++|+|+++++. ..+.+..+++.+.++++++....||+++..
T Consensus 143 ~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G 201 (331)
T PF07995_consen 143 PNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNG 201 (331)
T ss_dssp TTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-
T ss_pred cccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccC
Confidence 0112456777776532 223444556666777777663456666543
No 26
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=3.8e-07 Score=84.38 Aligned_cols=245 Identities=19% Similarity=0.231 Sum_probs=153.3
Q ss_pred CCceEEEcCCCCeeEEEe-cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 36 GPESLAFDCNGEGPYVGV-SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
.|.+++++++|..+|+.. ....+...+.. ...+... .......|.++++.+.++.+|+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~---~n~~~~~----------------~~~g~~~p~~i~v~~~~~~vyv~~ 92 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT---SNTVTQS----------------LSVGGVYPAGVAVNPAGNKVYVTT 92 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc---cceeeee----------------ccCCCccccceeeCCCCCeEEEec
Confidence 799999999996566543 33334444433 1111110 011125688999988667799986
Q ss_pred CC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290 115 AY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV 193 (343)
Q Consensus 115 ~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 193 (343)
.. +.+..+|.++.+....... + ..+.++++++.++.+|+++... ..+.+..+|..+++.
T Consensus 93 ~~~~~v~vid~~~~~~~~~~~v--G---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~ 152 (381)
T COG3391 93 GDSNTVSVIDTATNTVLGSIPV--G---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKV 152 (381)
T ss_pred CCCCeEEEEcCcccceeeEeee--c---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeE
Confidence 54 5699999765544332221 1 3688999999645899998741 156799999987776
Q ss_pred EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccc-cceeeecCCCCCCceeeCCCCC-EEEEeccCCCcc
Q 019290 194 TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTY-TPQLFAEMPRFPDNIKSDSKGE-FWIAMNSARGKI 271 (343)
Q Consensus 194 ~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~~~~~~ 271 (343)
.........|.+++++++|..+|+++...+.|..++..+..... ...........|.++.++++|+ +|++... ..
T Consensus 153 ~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~-- 229 (381)
T COG3391 153 TATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SG-- 229 (381)
T ss_pred EEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CC--
Confidence 55444444679999999999999999889999999976643310 0000112233588999999996 7888765 11
Q ss_pred ccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCce-eEEEeCCEEEEecCCCCeEEEEc
Q 019290 272 ESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVS-EVQEYGEYLYTGSSVQPYVVVIK 342 (343)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~-~~~~~~g~l~i~~~~~~~i~~~~ 342 (343)
.+.+.++|...........+.+.. .... ...+++..+|+.....+.+.+++
T Consensus 230 -------------------~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 230 -------------------SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVID 281 (381)
T ss_pred -------------------CceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEe
Confidence 137778887543333322222211 1222 22334666777766666666664
No 27
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.98 E-value=2.5e-08 Score=95.02 Aligned_cols=194 Identities=16% Similarity=0.253 Sum_probs=135.6
Q ss_pred ccccCCCCCCCceEEEcCCCC-eeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC
Q 019290 27 QQLQLPGVVGPESLAFDCNGE-GPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP 105 (343)
Q Consensus 27 ~~~~~~~~~~p~~l~~d~~g~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~ 105 (343)
..+.+|+ .-+-+|.+|...+ ++|++.....|-+-..++.+-+.|.+ .....|.||++|.
T Consensus 1018 ~~l~~p~-~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n-------------------~~L~SPEGiAVDh 1077 (1289)
T KOG1214|consen 1018 TLLSLPG-SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVN-------------------SGLISPEGIAVDH 1077 (1289)
T ss_pred ceEeccc-ceeeeeecccccceEEEeecCCCccccccccCCCCceeec-------------------ccCCCccceeeee
Confidence 3456663 3478999997655 66788777778887777766555532 3456789999998
Q ss_pred CCCeEEEEeCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce
Q 019290 106 VTCDLYIADAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR 182 (343)
Q Consensus 106 ~~~~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 182 (343)
..+++|.+|... ++..+|-. +.+.+.... +..+.+|++|+-.|+||++|..+. .-.
T Consensus 1078 ~~Rn~ywtDS~lD~IevA~LdG~--~rkvLf~td----LVNPR~iv~D~~rgnLYwtDWnRe---------------nPk 1136 (1289)
T KOG1214|consen 1078 IRRNMYWTDSVLDKIEVALLDGS--ERKVLFYTD----LVNPRAIVVDPIRGNLYWTDWNRE---------------NPK 1136 (1289)
T ss_pred ccceeeeeccccchhheeecCCc--eeeEEEeec----ccCcceEEeecccCceeecccccc---------------CCc
Confidence 788999997642 34445432 222332221 245789999987789999998742 335
Q ss_pred EEEEeCCCCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEE
Q 019290 183 LLKYDPLKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFW 261 (343)
Q Consensus 183 v~~~d~~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lw 261 (343)
|-+.++++...+.+. .++..|||+.|++..+.|-|.+..++++.....++.. + +++...-..|.+++.+.+. +|
T Consensus 1137 Iets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~g---R-R~i~~~LqYPF~itsy~~~-fY 1211 (1289)
T KOG1214|consen 1137 IETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTG---R-RVIQNNLQYPFSITSYADH-FY 1211 (1289)
T ss_pred ceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCc---c-hhhhhcccCceeeeecccc-ce
Confidence 667777655544444 5677899999999999999999999999998887642 2 2332323468888888776 99
Q ss_pred EEecc
Q 019290 262 IAMNS 266 (343)
Q Consensus 262 i~~~~ 266 (343)
.++|.
T Consensus 1212 ~TDWk 1216 (1289)
T KOG1214|consen 1212 HTDWK 1216 (1289)
T ss_pred eeccc
Confidence 99997
No 28
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.92 E-value=4.8e-08 Score=90.04 Aligned_cols=107 Identities=18% Similarity=0.142 Sum_probs=69.1
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY 116 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~ 116 (343)
-..++.|..|+ +|+++..| ++.+++.+.++..-.. .-...+..-+.-|. ++.+||+ +.
T Consensus 208 I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~sn~~~------------------~lp~~~I~ll~qD~-qG~lWiG-Te 265 (671)
T COG3292 208 INALIADVQGR-LWVGTDQG-VYLQEAEGWRASNWGP------------------MLPSGNILLLVQDA-QGELWIG-TE 265 (671)
T ss_pred HHHHHHHhcCc-EEEEeccc-eEEEchhhccccccCC------------------CCcchheeeeeccc-CCCEEEe-ec
Confidence 44667788888 99998877 8999887743321100 01122334444565 8899999 57
Q ss_pred CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccccc
Q 019290 117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQR 167 (343)
Q Consensus 117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~ 167 (343)
+|+.++......+... ......+...++++..|. +|.+|+++...+..+
T Consensus 266 nGl~r~~l~rq~Lq~~-~~~~~l~~S~vnsL~~D~-dGsLWv~t~~giv~~ 314 (671)
T COG3292 266 NGLWRTRLPRQGLQIP-LSKMHLGVSTVNSLWLDT-DGSLWVGTYGGIVRY 314 (671)
T ss_pred ccceeEecCCCCcccc-ccccCCccccccceeecc-CCCEeeeccCceEEE
Confidence 8988776654433322 222333456679999999 699999998765444
No 29
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=1.2e-06 Score=81.10 Aligned_cols=187 Identities=19% Similarity=0.250 Sum_probs=130.1
Q ss_pred CCCceEEEcCCCCeeEEE-ecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290 35 VGPESLAFDCNGEGPYVG-VSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA 113 (343)
Q Consensus 35 ~~p~~l~~d~~g~~l~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~ 113 (343)
..|.+++..+.|+.+|+. ...+.+..+|..+....... .....|.+++++++++.+|++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~--------------------~vG~~P~~~~~~~~~~~vYV~ 133 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI--------------------PVGLGPVGLAVDPDGKYVYVA 133 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe--------------------eeccCCceEEECCCCCEEEEE
Confidence 579999999999977754 45688999986554433321 112268999999977799999
Q ss_pred eCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290 114 DAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL 189 (343)
Q Consensus 114 ~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 189 (343)
+.. +-+..+|..+.+....... + ..+.++++++. |. +|+++.. .+.|..+|.+
T Consensus 134 n~~~~~~~vsvid~~t~~~~~~~~v--G---~~P~~~a~~p~-g~~vyv~~~~-----------------~~~v~vi~~~ 190 (381)
T COG3391 134 NAGNGNNTVSVIDAATNKVTATIPV--G---NTPTGVAVDPD-GNKVYVTNSD-----------------DNTVSVIDTS 190 (381)
T ss_pred ecccCCceEEEEeCCCCeEEEEEec--C---CCcceEEECCC-CCeEEEEecC-----------------CCeEEEEeCC
Confidence 874 3389999998876654221 1 24589999995 65 9998854 5678889877
Q ss_pred CCceEE-----eecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEE
Q 019290 190 KKNVTV-----MYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWI 262 (343)
Q Consensus 190 ~~~~~~-----~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi 262 (343)
+..+.+ ....+..|.++++++++..+|+++... +.+.+++...... .......... .|.++..+++|+.+.
T Consensus 191 ~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v-~~~~~~~~~~-~~~~v~~~p~g~~~y 268 (381)
T COG3391 191 GNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV-TATDLPVGSG-APRGVAVDPAGKAAY 268 (381)
T ss_pred CcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE-EEeccccccC-CCCceeECCCCCEEE
Confidence 655543 233456789999999999999998876 5888888664221 1110111122 588999999997665
Q ss_pred Eecc
Q 019290 263 AMNS 266 (343)
Q Consensus 263 ~~~~ 266 (343)
..+.
T Consensus 269 v~~~ 272 (381)
T COG3391 269 VANS 272 (381)
T ss_pred EEec
Confidence 5544
No 30
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.88 E-value=1.1e-05 Score=72.79 Aligned_cols=256 Identities=13% Similarity=0.096 Sum_probs=138.1
Q ss_pred ccccccccCCCCCCCceEEEcCCCCeeEEEe----------cCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCccc
Q 019290 23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGV----------SDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTL 91 (343)
Q Consensus 23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~----------~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 91 (343)
.+.+..++.+. .|+.+ +++||+.+|++. ..+.|-.+|..+.+.. ++.. +..+ .
T Consensus 37 ~~v~g~i~~G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~-p~~p------------~ 100 (352)
T TIGR02658 37 GRVLGMTDGGF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIEL-PEGP------------R 100 (352)
T ss_pred CEEEEEEEccC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEcc-CCCc------------h
Confidence 44455666554 78886 999999888654 4678999999886543 2221 0000 0
Q ss_pred CCCcCCeeeEEEeCCCCeEEEEeCC--CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccccccc
Q 019290 92 EPLCGRPLGIKFNPVTCDLYIADAY--FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQ 169 (343)
Q Consensus 92 ~~~~~~p~gi~~~~~~~~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~ 169 (343)
......+..++++++++.|||++.. +.+..+|.+++++..-..... +..+....++..+...-.+
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~------~~~vy~t~e~~~~~~~~Dg------- 167 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD------CYHIFPTANDTFFMHCRDG------- 167 (352)
T ss_pred hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC------CcEEEEecCCccEEEeecC-------
Confidence 0113346689999966789999743 559999999988765333211 1222222211111110000
Q ss_pred ceeeeeecCCCceEEEEeCCCCceE-----Eeec--C--CCCcceeEEec-CCCEEEEEEcCCCeEEEEEccCcccc--c
Q 019290 170 YFMSIATGDRSGRLLKYDPLKKNVT-----VMYN--G--LSFPNGVALSN-NNSFLLLAESATLKILRFWLQGERTT--Y 237 (343)
Q Consensus 170 ~~~~~~~~~~~~~v~~~d~~~~~~~-----~~~~--~--~~~~~~i~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~--~ 237 (343)
.-..+.++.+ |+.. .+.. . +..| .+.+ +++.+|++.. +.|+.+|+.++... .
T Consensus 168 ----------~~~~v~~d~~-g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~ 231 (352)
T TIGR02658 168 ----------SLAKVGYGTK-GNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLP 231 (352)
T ss_pred ----------ceEEEEecCC-CceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecc
Confidence 0011112211 1111 0000 0 1233 3345 7777777653 99999997654320 1
Q ss_pred cceeeecC----CCCCCc---eeeCCCC-CEEEEeccCCCccccccccccccccCCCcc--cCCCeEEEECC-CCCEEEE
Q 019290 238 TPQLFAEM----PRFPDN---IKSDSKG-EFWIAMNSARGKIESNKKTAFCEETAKPWF--LRDPVGVKFDV-NGNVVDV 306 (343)
Q Consensus 238 ~~~~~~~~----~~~p~~---i~~d~~G-~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~d~-~g~~~~~ 306 (343)
....+... .-.|.+ ++++++| ++|++++. +. .|. .+.+.|..+|. .++.+..
T Consensus 232 ~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~-~~----------------~~thk~~~~~V~ViD~~t~kvi~~ 294 (352)
T TIGR02658 232 AIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ-RA----------------KWTHKTASRFLFVVDAKTGKRLRK 294 (352)
T ss_pred eeeeccccccccccCCCcceeEEEcCCCCEEEEEecC-Cc----------------cccccCCCCEEEEEECCCCeEEEE
Confidence 11222111 114556 8889876 78997654 11 011 22357889997 4666776
Q ss_pred eeCCCCCccCCceeEEEeCC-EEEEecCCCCeEEEEcC
Q 019290 307 LDGNEGNTLNSVSEVQEYGE-YLYTGSSVQPYVVVIKA 343 (343)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~g-~l~i~~~~~~~i~~~~~ 343 (343)
+..... ...+ .+..++. .||+++..++.|.++|.
T Consensus 295 i~vG~~--~~~i-avS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 295 IELGHE--IDSI-NVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred EeCCCc--eeeE-EECCCCCeEEEEeCCCCCcEEEEEC
Confidence 654221 1111 1233456 78888888999999874
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.88 E-value=7.3e-06 Score=71.13 Aligned_cols=230 Identities=16% Similarity=0.163 Sum_probs=139.6
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC-
Q 019290 38 ESLAFDCNGEGPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA- 115 (343)
Q Consensus 38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~- 115 (343)
..+.+.++++.++++..++.+..|+..+++ ...+. .....+..+.+.+ ++.++++..
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~--------------------~~~~~i~~~~~~~-~~~~~~~~~~ 113 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT--------------------GHTSYVSSVAFSP-DGRILSSSSR 113 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe--------------------ccCCcEEEEEEcC-CCCEEEEecC
Confidence 488899999878888889999999987642 22221 1122456788887 566666644
Q ss_pred CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE-
Q 019290 116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT- 194 (343)
Q Consensus 116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~- 194 (343)
...+..+|.++++........ ...+..+.+++ ++.++++... .+.|..||..+++..
T Consensus 114 ~~~i~~~~~~~~~~~~~~~~~----~~~i~~~~~~~-~~~~l~~~~~-----------------~~~i~i~d~~~~~~~~ 171 (289)
T cd00200 114 DKTIKVWDVETGKCLTTLRGH----TDWVNSVAFSP-DGTFVASSSQ-----------------DGTIKLWDLRTGKCVA 171 (289)
T ss_pred CCeEEEEECCCcEEEEEeccC----CCcEEEEEEcC-cCCEEEEEcC-----------------CCcEEEEEccccccce
Confidence 345899998866544332211 13477889998 4776664432 456888887655433
Q ss_pred EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCccccc
Q 019290 195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIESN 274 (343)
Q Consensus 195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~ 274 (343)
.+.........++++++++.++++.. .+.|..|++..... ...+.........+..++++.++++...
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------- 239 (289)
T cd00200 172 TLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKC---LGTLRGHENGVNSVAFSPDGYLLASGSE-------- 239 (289)
T ss_pred eEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCce---ecchhhcCCceEEEEEcCCCcEEEEEcC--------
Confidence 22323335778899999877777654 78999999864211 1122112223556778888888887763
Q ss_pred cccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290 275 KKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK 342 (343)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~ 342 (343)
.+.+..++.+ ++....+.... ..+..+... ++.++++......+.+++
T Consensus 240 ----------------~~~i~i~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 240 ----------------DGTIRVWDLRTGECVQTLSGHT----NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ----------------CCcEEEEEcCCceeEEEccccC----CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 2466777764 55555544221 234444433 445555555555666553
No 32
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=3.8e-06 Score=79.51 Aligned_cols=206 Identities=13% Similarity=0.134 Sum_probs=122.1
Q ss_pred ceEEEcCCCCeeE-EEecC--CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 38 ESLAFDCNGEGPY-VGVSD--GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 38 ~~l~~d~~g~~l~-~~~~~--g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
.+..++|||+.++ +...+ ..|+.+|..+++...+... .+......+++++..|+++.
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~--------------------~g~~~~~~wSPDG~~La~~~ 280 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF--------------------PGINGAPRFSPDGKKLALVL 280 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC--------------------CCCcCCeeECCCCCEEEEEE
Confidence 3678899998554 44333 3699999887765544210 01112456777555676653
Q ss_pred CCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290 115 AYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK 190 (343)
Q Consensus 115 ~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 190 (343)
... .|+.+|.++++.+.+.... .......+.+ ||+ ++++... .....||++|.++
T Consensus 281 ~~~g~~~Iy~~dl~tg~~~~lt~~~-----~~~~~p~wSp-DG~~I~f~s~~---------------~g~~~Iy~~dl~~ 339 (448)
T PRK04792 281 SKDGQPEIYVVDIATKALTRITRHR-----AIDTEPSWHP-DGKSLIFTSER---------------GGKPQIYRVNLAS 339 (448)
T ss_pred eCCCCeEEEEEECCCCCeEECccCC-----CCccceEECC-CCCEEEEEECC---------------CCCceEEEEECCC
Confidence 333 3999999988877664321 1234566777 454 5554321 1134699999988
Q ss_pred CceEEeecCCCCcceeEEecCCCEEEEEEcCCC--eEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEeccC
Q 019290 191 KNVTVMYNGLSFPNGVALSNNNSFLLLAESATL--KILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNSA 267 (343)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~~ 267 (343)
++.+.+..........++++||+.++++....+ .|+++++++ +..+.+... .......++++|+ |+++...
T Consensus 340 g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~----g~~~~lt~~-~~d~~ps~spdG~~I~~~~~~- 413 (448)
T PRK04792 340 GKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET----GAMQVLTST-RLDESPSVAPNGTMVIYSTTY- 413 (448)
T ss_pred CCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC----CCeEEccCC-CCCCCceECCCCCEEEEEEec-
Confidence 887765433333345688999999988765443 677788765 333333221 1122346778885 4444443
Q ss_pred CCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCC
Q 019290 268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNE 311 (343)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~ 311 (343)
+. ...++.++.+|+....+..+.
T Consensus 414 ~g---------------------~~~l~~~~~~G~~~~~l~~~~ 436 (448)
T PRK04792 414 QG---------------------KQVLAAVSIDGRFKARLPAGQ 436 (448)
T ss_pred CC---------------------ceEEEEEECCCCceEECcCCC
Confidence 22 125777888888766665443
No 33
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.1e-05 Score=67.73 Aligned_cols=238 Identities=11% Similarity=0.032 Sum_probs=145.0
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
.+.+|.++.+|..+.+...+..+..||-.++....... .....+.-+.+..+...+.-+.+
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~-------------------skkyG~~~~~Fth~~~~~i~sSt 76 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN-------------------SKKYGVDLACFTHHSNTVIHSST 76 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee-------------------cccccccEEEEecCCceEEEccC
Confidence 68999999999988887888889999987665443221 22223444555544566655543
Q ss_pred C--CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290 116 Y--FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV 193 (343)
Q Consensus 116 ~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 193 (343)
. .-|..+++.+.+..+...... ..+++|.+.|. +..+++.+- ...|..||....+.
T Consensus 77 k~d~tIryLsl~dNkylRYF~GH~----~~V~sL~~sP~-~d~FlS~S~-----------------D~tvrLWDlR~~~c 134 (311)
T KOG1446|consen 77 KEDDTIRYLSLHDNKYLRYFPGHK----KRVNSLSVSPK-DDTFLSSSL-----------------DKTVRLWDLRVKKC 134 (311)
T ss_pred CCCCceEEEEeecCceEEEcCCCC----ceEEEEEecCC-CCeEEeccc-----------------CCeEEeeEecCCCC
Confidence 2 348888888777666544332 45899999995 788886653 34677788765544
Q ss_pred EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC-C--CCCCceeeCCCCCE-EEEeccCCC
Q 019290 194 TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM-P--RFPDNIKSDSKGEF-WIAMNSARG 269 (343)
Q Consensus 194 ~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~--~~p~~i~~d~~G~l-wi~~~~~~~ 269 (343)
..+. .+..+...|++|.|- ++++...++.|-.||+..=.+ +.+..+.-. + ..-..|.+.++|+. .+++..
T Consensus 135 qg~l-~~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~--- 208 (311)
T KOG1446|consen 135 QGLL-NLSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA--- 208 (311)
T ss_pred ceEE-ecCCCcceeECCCCc-EEEEecCCCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeCC---
Confidence 3322 334566778888773 444455555888898763222 333343221 1 12345788999964 555544
Q ss_pred ccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290 270 KIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK 342 (343)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~ 342 (343)
+-++.+|. +|.+...+.............+..-+++..+++....+|.+++
T Consensus 209 ----------------------s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 209 ----------------------SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred ----------------------CcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence 35667776 8887777654332111122222223566666666666666654
No 34
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.82 E-value=2.5e-07 Score=85.22 Aligned_cols=141 Identities=18% Similarity=0.286 Sum_probs=93.9
Q ss_pred CcCCeeeEEEeCCCCeEEEEeCC-------------CeEEEEeCC--CCeE---EEcccccCCCCccCcceeEEeCCCCe
Q 019290 94 LCGRPLGIKFNPVTCDLYIADAY-------------FGLMVVGPN--GGQA---QQLASSAGGIPFRFTNDLDIDPNTGI 155 (343)
Q Consensus 94 ~~~~p~gi~~~~~~~~l~v~~~~-------------~gi~~~d~~--~~~~---~~~~~~~~~~~~~~~~~i~~d~~dg~ 155 (343)
....|.+|++++ +|+|||++.. ..|++++.. .|+. +.++.. ...++++++.+ +|
T Consensus 12 ~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~-----l~~p~Gi~~~~-~G- 83 (367)
T TIGR02604 12 LLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE-----LSMVTGLAVAV-GG- 83 (367)
T ss_pred ccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC-----CCCccceeEec-CC-
Confidence 356789999998 8999999631 257777542 2332 333221 34689999998 57
Q ss_pred EEEEeCCcccccccceeeeeecCCCceEEEE-eCCC-----CceEEeecCC--------CCcceeEEecCCCEEEEEEcC
Q 019290 156 VYFTDSSIYFQRRQYFMSIATGDRSGRLLKY-DPLK-----KNVTVMYNGL--------SFPNGVALSNNNSFLLLAESA 221 (343)
Q Consensus 156 l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~-d~~~-----~~~~~~~~~~--------~~~~~i~~~~d~~~lyv~~~~ 221 (343)
+|+++.. .|+++ |.+. ++.+.+..++ ..++++++.+||. ||++...
T Consensus 84 lyV~~~~-------------------~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~ 143 (367)
T TIGR02604 84 VYVATPP-------------------DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGN 143 (367)
T ss_pred EEEeCCC-------------------eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEeccc
Confidence 9997643 57777 3321 1334443322 2377899999985 8886541
Q ss_pred -------------------CCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290 222 -------------------TLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 222 -------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
.+.|+++++++ ++.++++..-.-|.++++|++|++|++++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg----~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 144 TLASKVTRPGTSDESRQGLGGGLFRYNPDG----GKLRVVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred CCCceeccCCCccCcccccCceEEEEecCC----CeEEEEecCcCCCccceECCCCCEEEEccC
Confidence 25799999877 455666542233889999999999999875
No 35
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=8.1e-06 Score=76.89 Aligned_cols=207 Identities=14% Similarity=0.140 Sum_probs=121.6
Q ss_pred ceEEEcCCCCeeEEEe-c--CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 38 ESLAFDCNGEGPYVGV-S--DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 38 ~~l~~d~~g~~l~~~~-~--~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
.+.+++|||+.+++.. . ...|+.+|..+++...+.. ..+......++++++.|+++.
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~--------------------~~g~~~~~~~SPDG~~la~~~ 258 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN--------------------FKGSNSAPAWSPDGRTLAVAL 258 (427)
T ss_pred ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec--------------------CCCCccceEECCCCCEEEEEE
Confidence 4678999998665433 2 2469999998876655431 011223466787455676653
Q ss_pred CC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290 115 AY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK 190 (343)
Q Consensus 115 ~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 190 (343)
.. ..|+.+|.+++..+.+.... .......+.+ ||+ ++++... .....||.++.++
T Consensus 259 ~~~g~~~Iy~~d~~~~~~~~lt~~~-----~~~~~~~wSp-DG~~l~f~s~~---------------~g~~~Iy~~~~~~ 317 (427)
T PRK02889 259 SRDGNSQIYTVNADGSGLRRLTQSS-----GIDTEPFFSP-DGRSIYFTSDR---------------GGAPQIYRMPASG 317 (427)
T ss_pred ccCCCceEEEEECCCCCcEECCCCC-----CCCcCeEEcC-CCCEEEEEecC---------------CCCcEEEEEECCC
Confidence 33 34999998877766653211 1223456788 465 5543221 1134689998777
Q ss_pred CceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEeccC
Q 019290 191 KNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNSA 267 (343)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~~ 267 (343)
++.+.+..........+++|||+.++++...+ ..|+++++.+ +..+.+... .........++|+ |+++...
T Consensus 318 g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~----g~~~~lt~~-~~~~~p~~spdg~~l~~~~~~- 391 (427)
T PRK02889 318 GAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT----GQVTALTDT-TRDESPSFAPNGRYILYATQQ- 391 (427)
T ss_pred CceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC----CCeEEccCC-CCccCceECCCCCEEEEEEec-
Confidence 76655543222234567999999887765433 2688898775 333333322 1234567888886 4444443
Q ss_pred CCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCC
Q 019290 268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEG 312 (343)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~ 312 (343)
+. ...++.++.+|+....+..+.+
T Consensus 392 ~g---------------------~~~l~~~~~~g~~~~~l~~~~g 415 (427)
T PRK02889 392 GG---------------------RSVLAAVSSDGRIKQRLSVQGG 415 (427)
T ss_pred CC---------------------CEEEEEEECCCCceEEeecCCC
Confidence 22 1257778888877666654444
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.79 E-value=3.1e-05 Score=67.10 Aligned_cols=185 Identities=14% Similarity=0.157 Sum_probs=112.3
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
...++++.++++.++++..++.+..|+..+++...... ........+.+.+.++.++++..
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-------------------~~~~~i~~~~~~~~~~~l~~~~~ 71 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-------------------GHTGPVRDVAASADGTYLASGSS 71 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe-------------------cCCcceeEEEECCCCCEEEEEcC
Confidence 46789999999978888889999999887654221110 11122347778874446777644
Q ss_pred CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290 116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV 195 (343)
Q Consensus 116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 195 (343)
...+..++.++++........ ...+..+.+.+ ++.++++... .+.|..||..+++...
T Consensus 72 ~~~i~i~~~~~~~~~~~~~~~----~~~i~~~~~~~-~~~~~~~~~~-----------------~~~i~~~~~~~~~~~~ 129 (289)
T cd00200 72 DKTIRLWDLETGECVRTLTGH----TSYVSSVAFSP-DGRILSSSSR-----------------DKTIKVWDVETGKCLT 129 (289)
T ss_pred CCeEEEEEcCcccceEEEecc----CCcEEEEEEcC-CCCEEEEecC-----------------CCeEEEEECCCcEEEE
Confidence 445888998865322221111 12467888888 4777775542 4578888877555433
Q ss_pred eec-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEec
Q 019290 196 MYN-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMN 265 (343)
Q Consensus 196 ~~~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~ 265 (343)
... .......+++++++..++. ...++.|..|++..... ...+.........+..+++|+ ++++..
T Consensus 130 ~~~~~~~~i~~~~~~~~~~~l~~-~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 130 TLRGHTDWVNSVAFSPDGTFVAS-SSQDGTIKLWDLRTGKC---VATLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred EeccCCCcEEEEEEcCcCCEEEE-EcCCCcEEEEEcccccc---ceeEecCccccceEEECCCcCEEEEecC
Confidence 222 3345678889888765544 44578899999864221 122222222356678888884 555543
No 37
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=6.2e-06 Score=77.86 Aligned_cols=206 Identities=14% Similarity=0.099 Sum_probs=122.3
Q ss_pred CceEEEcCCCCeeEEEe-c--CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290 37 PESLAFDCNGEGPYVGV-S--DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA 113 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~-~--~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~ 113 (343)
..+.++++||+.+++.. . ...|+.+|..+++...+... .+......+++++..|+++
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~--------------------~g~~~~~~~SpDG~~l~~~ 265 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF--------------------RGINGAPSFSPDGRRLALT 265 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC--------------------CCCccCceECCCCCEEEEE
Confidence 34667889998555433 2 34699999987766554311 1112245677745567655
Q ss_pred eCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290 114 DAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL 189 (343)
Q Consensus 114 ~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 189 (343)
.... .|+.+|.++++.+.+.... .......+.+ ||+ ++++... .+...||.++.+
T Consensus 266 ~s~~g~~~Iy~~d~~~g~~~~lt~~~-----~~~~~~~~sp-DG~~l~f~sd~---------------~g~~~iy~~dl~ 324 (433)
T PRK04922 266 LSRDGNPEIYVMDLGSRQLTRLTNHF-----GIDTEPTWAP-DGKSIYFTSDR---------------GGRPQIYRVAAS 324 (433)
T ss_pred EeCCCCceEEEEECCCCCeEECccCC-----CCccceEECC-CCCEEEEEECC---------------CCCceEEEEECC
Confidence 3322 4999999988877653221 1124567888 465 5543221 112469999987
Q ss_pred CCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEecc
Q 019290 190 KKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNS 266 (343)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~ 266 (343)
+++.+.+..........++++||+.++++...+ ..|+.+++++ +..+.+.... .......+++|+ ++++...
T Consensus 325 ~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~----g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 325 GGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST----GSVRTLTPGS-LDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred CCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC----CCeEECCCCC-CCCCceECCCCCEEEEEEec
Confidence 777766543333344678999999988875433 3688898865 3333333221 234457788996 4444433
Q ss_pred CCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCC
Q 019290 267 ARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGN 310 (343)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~ 310 (343)
+. ...++.++.+|.....+..+
T Consensus 400 -~g---------------------~~~L~~~~~~g~~~~~l~~~ 421 (433)
T PRK04922 400 -GG---------------------RGVLAAVSTDGRVRQRLVSA 421 (433)
T ss_pred -CC---------------------ceEEEEEECCCCceEEcccC
Confidence 22 23688888888766655443
No 38
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=1.4e-05 Score=75.59 Aligned_cols=139 Identities=12% Similarity=0.122 Sum_probs=84.1
Q ss_pred eeeEEEeCCCCeEEEEeCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceee
Q 019290 98 PLGIKFNPVTCDLYIADAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMS 173 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~ 173 (343)
.....++++++.|.+.... ..|+.+|+++++.+.+.... ......++.| ||+ +.++...
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~-----g~~~~~~~SP-DG~~la~~~~~----------- 266 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP-----GMTFAPRFSP-DGRKVVMSLSQ----------- 266 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC-----CcccCcEECC-CCCEEEEEEec-----------
Confidence 3456777745556555332 34999999988776653221 1234567888 565 5554322
Q ss_pred eeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCc
Q 019290 174 IATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDN 251 (343)
Q Consensus 174 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~ 251 (343)
.....||.+|.++++.+.+...........++|||+.++++.... ..||++++++ ++.+.+....+....
T Consensus 267 ----~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g----~~~~~lt~~~~~~~~ 338 (435)
T PRK05137 267 ----GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG----SNPRRISFGGGRYST 338 (435)
T ss_pred ----CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC----CCeEEeecCCCcccC
Confidence 113469999998888776654433345678899999887765433 4799998776 333333322222234
Q ss_pred eeeCCCCCEE
Q 019290 252 IKSDSKGEFW 261 (343)
Q Consensus 252 i~~d~~G~lw 261 (343)
....++|+..
T Consensus 339 ~~~SpdG~~i 348 (435)
T PRK05137 339 PVWSPRGDLI 348 (435)
T ss_pred eEECCCCCEE
Confidence 5677888543
No 39
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.76 E-value=2.7e-06 Score=78.14 Aligned_cols=171 Identities=16% Similarity=0.185 Sum_probs=104.2
Q ss_pred ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290 23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGI 101 (343)
Q Consensus 23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi 101 (343)
.+.+..++.++.. +.++++.+||+.+|+...+|.|..+|..+.+.. .+ .....|.++
T Consensus 26 ~~~~~~i~~~~~~-h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i---------------------~~G~~~~~i 83 (369)
T PF02239_consen 26 NKVVARIPTGGAP-HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI---------------------KVGGNPRGI 83 (369)
T ss_dssp -SEEEEEE-STTE-EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE---------------------E-SSEEEEE
T ss_pred CeEEEEEcCCCCc-eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE---------------------ecCCCcceE
Confidence 4556777776422 566889999998998888999999999886533 32 223458899
Q ss_pred EEeCCCCeEEEEeCC-CeEEEEeCCCCeEEEccccc---CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290 102 KFNPVTCDLYIADAY-FGLMVVGPNGGQAQQLASSA---GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG 177 (343)
Q Consensus 102 ~~~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~---~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~ 177 (343)
+++++++.+++++.. ..+..+|.++.+........ ...+...+..+...+ .+..|+.+..
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lk--------------- 147 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLK--------------- 147 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEET---------------
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEc---------------
Confidence 999866678888643 55999999876544322211 111223445666666 3555554321
Q ss_pred CCCceEEEEeCCCCce--EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 178 DRSGRLLKYDPLKKNV--TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 178 ~~~~~v~~~d~~~~~~--~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
..+.|+.+|....+. .....-...+.+..+++++++++++....+.|-.+|...
T Consensus 148 -d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~ 203 (369)
T PF02239_consen 148 -DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT 203 (369)
T ss_dssp -TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT
T ss_pred -cCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeecc
Confidence 156899888653321 123334567889999999999999888889999999765
No 40
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.75 E-value=4.1e-06 Score=83.76 Aligned_cols=239 Identities=19% Similarity=0.260 Sum_probs=142.5
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
.|-.++..+||. +|++..+- |.|+-+++...+.+.... ........|+++|.+|.||+++.
T Consensus 366 aPvala~a~DGS-l~VGDfNy-IRRI~~dg~v~tIl~L~~-----------------t~~sh~Yy~AvsPvdgtlyvSdp 426 (1899)
T KOG4659|consen 366 APVALAYAPDGS-LIVGDFNY-IRRISQDGQVSTILTLGL-----------------TDTSHSYYIAVSPVDGTLYVSDP 426 (1899)
T ss_pred ceeeEEEcCCCc-EEEccchh-eeeecCCCceEEEEEecC-----------------CCccceeEEEecCcCceEEecCC
Confidence 478899999999 88876655 777776664433332211 12233467999999999999987
Q ss_pred CCe-EEEEeC-CC----CeEEEcccc----------------cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceee
Q 019290 116 YFG-LMVVGP-NG----GQAQQLASS----------------AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMS 173 (343)
Q Consensus 116 ~~g-i~~~d~-~~----~~~~~~~~~----------------~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~ 173 (343)
... |+++-. +. ..+..++.. ...+.+.+|.+|++|+ +|.||++|..
T Consensus 427 ~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk-~g~lYfaD~t----------- 494 (1899)
T KOG4659|consen 427 LSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDK-MGNLYFADGT----------- 494 (1899)
T ss_pred CcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEcc-CCcEEEeccc-----------
Confidence 654 887732 11 112222210 1234567899999999 5999998865
Q ss_pred eeecCCCceEEEEeCCCCceEEee--------------------cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290 174 IATGDRSGRLLKYDPLKKNVTVMY--------------------NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE 233 (343)
Q Consensus 174 ~~~~~~~~~v~~~d~~~~~~~~~~--------------------~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~ 233 (343)
.|-.+|.. |.++.+. -.+..|..++++|=.+.|||.++ +-|++++....
T Consensus 495 --------~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~r 563 (1899)
T KOG4659|consen 495 --------RIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHR 563 (1899)
T ss_pred --------EEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCcc
Confidence 24444432 2222211 12456889999997778999874 67888776542
Q ss_pred ccc--ccceeeecCC---------------CCCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEE
Q 019290 234 RTT--YTPQLFAEMP---------------RFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVK 296 (343)
Q Consensus 234 ~~~--~~~~~~~~~~---------------~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 296 (343)
-.+ ++. .-+..+ -.+..|++.++|.|||+..+ +-++ +.|..
T Consensus 564 V~Ii~GrP-~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD-~rri--------------------Nrvr~ 621 (1899)
T KOG4659|consen 564 VRIILGRP-THCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESD-GRRI--------------------NRVRK 621 (1899)
T ss_pred EEEEcCCc-cccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEecc-chhh--------------------hheEE
Confidence 110 000 000011 12567889999999999887 3332 36666
Q ss_pred ECCCCCEEEEeeC---CCCC-------------------ccCCceeEEE-eCCEEEEecCCCCeEE
Q 019290 297 FDVNGNVVDVLDG---NEGN-------------------TLNSVSEVQE-YGEYLYTGSSVQPYVV 339 (343)
Q Consensus 297 ~d~~g~~~~~~~~---~~~~-------------------~~~~~~~~~~-~~g~l~i~~~~~~~i~ 339 (343)
+..+| .+..++. +..+ ..+.++.+.. -+|.+||+.....+|.
T Consensus 622 ~~tdg-~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 622 LSTDG-TISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIR 686 (1899)
T ss_pred eccCc-eEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhh
Confidence 66677 3333321 1111 2233444333 3888999988876654
No 41
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.75 E-value=1.3e-06 Score=83.61 Aligned_cols=193 Identities=16% Similarity=0.204 Sum_probs=132.1
Q ss_pred CeeeEEEeCCCCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290 97 RPLGIKFNPVTCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA 175 (343)
Q Consensus 97 ~p~gi~~~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~ 175 (343)
-+.||.||=.+..+|++|.. ..|.+-.+++++.+.+... .+.++.+||+|....++|++|+...
T Consensus 1026 IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~----~L~SPEGiAVDh~~Rn~ywtDS~lD----------- 1090 (1289)
T KOG1214|consen 1026 IIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNS----GLISPEGIAVDHIRRNMYWTDSVLD----------- 1090 (1289)
T ss_pred eeeeeecccccceEEEeecCCCccccccccCCCCceeecc----cCCCccceeeeeccceeeeeccccc-----------
Confidence 36789998767788888753 3477777776665554322 2457889999975467999987521
Q ss_pred ecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcC--CCeEEEEEccCccccccceeeec-CCCCCCce
Q 019290 176 TGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESA--TLKILRFWLQGERTTYTPQLFAE-MPRFPDNI 252 (343)
Q Consensus 176 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i 252 (343)
.-.|..+|..- +...+..++..|.+|++++-++.|||++.. +-.|.+.+++| .+.+++.+ .-++|+|+
T Consensus 1091 ----~IevA~LdG~~-rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG----~NrRilin~DigLPNGL 1161 (1289)
T KOG1214|consen 1091 ----KIEVALLDGSE-RKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDG----ENRRILINTDIGLPNGL 1161 (1289)
T ss_pred ----hhheeecCCce-eeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCC----ccceEEeecccCCCCCc
Confidence 23355555331 122345788899999999999999999775 46788888887 55566665 55799999
Q ss_pred eeCCCCC--EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEE
Q 019290 253 KSDSKGE--FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYT 330 (343)
Q Consensus 253 ~~d~~G~--lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i 330 (343)
.+|+..+ .|+-... +++-++.++|.-.+.+.. + ...+..+..+..++|.
T Consensus 1162 tfdpfs~~LCWvDAGt-------------------------~rleC~~p~g~gRR~i~~--~--LqYPF~itsy~~~fY~ 1212 (1289)
T KOG1214|consen 1162 TFDPFSKLLCWVDAGT-------------------------KRLECTLPDGTGRRVIQN--N--LQYPFSITSYADHFYH 1212 (1289)
T ss_pred eeCcccceeeEEecCC-------------------------cceeEecCCCCcchhhhh--c--ccCceeeeecccccee
Confidence 9999764 3665433 477788887654333321 1 2344555556667999
Q ss_pred ecCCCCeEEEEc
Q 019290 331 GSSVQPYVVVIK 342 (343)
Q Consensus 331 ~~~~~~~i~~~~ 342 (343)
+.+..|+|.-++
T Consensus 1213 TDWk~n~vvsv~ 1224 (1289)
T KOG1214|consen 1213 TDWKRNGVVSVN 1224 (1289)
T ss_pred eccccCceEEee
Confidence 999999887653
No 42
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=1.7e-05 Score=74.90 Aligned_cols=208 Identities=14% Similarity=0.137 Sum_probs=122.3
Q ss_pred ceEEEcCCCCee-EEEecC--CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 38 ESLAFDCNGEGP-YVGVSD--GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 38 ~~l~~d~~g~~l-~~~~~~--g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
.+..+++||+.+ |+...+ ..|+.++..+++...+... .+......++++++.|+++.
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~--------------------~g~~~~~~~SpDG~~la~~~ 261 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF--------------------EGLNGAPAWSPDGSKLAFVL 261 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC--------------------CCCcCCeEECCCCCEEEEEE
Confidence 567889999855 444333 4799999988766554210 11122456777455676553
Q ss_pred CCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC
Q 019290 115 AYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK 191 (343)
Q Consensus 115 ~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 191 (343)
... .|+.+|.++++.+.+.... .......+.+++..++++... .+...||+++..++
T Consensus 262 ~~~g~~~Iy~~d~~~~~~~~lt~~~-----~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g 321 (430)
T PRK00178 262 SKDGNPEIYVMDLASRQLSRVTNHP-----AIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGG 321 (430)
T ss_pred ccCCCceEEEEECCCCCeEEcccCC-----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCC
Confidence 332 4999999988877664211 112345677732346664322 11346999998888
Q ss_pred ceEEeecCCCCcceeEEecCCCEEEEEEcCCC--eEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEE-EeccCC
Q 019290 192 NVTVMYNGLSFPNGVALSNNNSFLLLAESATL--KILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWI-AMNSAR 268 (343)
Q Consensus 192 ~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi-~~~~~~ 268 (343)
+.+.+...........+++|++.++++....+ .|+++++++ +..+.+... .......++++|+..+ +... +
T Consensus 322 ~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t----g~~~~lt~~-~~~~~p~~spdg~~i~~~~~~-~ 395 (430)
T PRK00178 322 RAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR----GSVRILTDT-SLDESPSVAPNGTMLIYATRQ-Q 395 (430)
T ss_pred CEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC----CCEEEccCC-CCCCCceECCCCCEEEEEEec-C
Confidence 77665433333344678999999988765433 588888775 333333322 1223456788886444 4433 2
Q ss_pred CccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCC
Q 019290 269 GKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEG 312 (343)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~ 312 (343)
. ...++.++.+|+....+..+.+
T Consensus 396 g---------------------~~~l~~~~~~g~~~~~l~~~~g 418 (430)
T PRK00178 396 G---------------------RGVLMLVSINGRVRLPLPTAQG 418 (430)
T ss_pred C---------------------ceEEEEEECCCCceEECcCCCC
Confidence 2 1367778888776655544433
No 43
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=1.8e-05 Score=74.61 Aligned_cols=206 Identities=16% Similarity=0.088 Sum_probs=122.6
Q ss_pred CceEEEcCCCCeeE-EEe--cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290 37 PESLAFDCNGEGPY-VGV--SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA 113 (343)
Q Consensus 37 p~~l~~d~~g~~l~-~~~--~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~ 113 (343)
..+.+++|||+.+. +.. ....|+.++..+++...+... .+......+++++..|+++
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--------------------~~~~~~~~~SPDG~~La~~ 260 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--------------------PRHNGAPAFSPDGSKLAFA 260 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--------------------CCCcCCeEECCCCCEEEEE
Confidence 35788999998554 432 234788898877765544210 0112245788855567765
Q ss_pred eCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290 114 DAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL 189 (343)
Q Consensus 114 ~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 189 (343)
.... .|+.+|.++++.+.+.... .......+.| ||+ |+++-.. .....||++|.+
T Consensus 261 ~~~~g~~~I~~~d~~tg~~~~lt~~~-----~~~~~~~wSP-DG~~I~f~s~~---------------~g~~~Iy~~d~~ 319 (429)
T PRK03629 261 LSKTGSLNLYVMDLASGQIRQVTDGR-----SNNTEPTWFP-DSQNLAYTSDQ---------------AGRPQVYKVNIN 319 (429)
T ss_pred EcCCCCcEEEEEECCCCCEEEccCCC-----CCcCceEECC-CCCEEEEEeCC---------------CCCceEEEEECC
Confidence 3322 4999999988877664321 1245677888 465 5443221 013469999988
Q ss_pred CCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccC
Q 019290 190 KKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSA 267 (343)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~ 267 (343)
+++.+.+..........+++|||+.++++...+ ..|+.+++++ ++.+.+... .......+.+||+..+.....
T Consensus 320 ~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~----g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~ 394 (429)
T PRK03629 320 GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT----GGVQVLTDT-FLDETPSIAPNGTMVIYSSSQ 394 (429)
T ss_pred CCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC----CCeEEeCCC-CCCCCceECCCCCEEEEEEcC
Confidence 877766644333445678899999887765433 4588888765 333333321 112345678999754443332
Q ss_pred CCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeC
Q 019290 268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDG 309 (343)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~ 309 (343)
+.. ..++.++.+|+....+..
T Consensus 395 ~~~---------------------~~l~~~~~~G~~~~~l~~ 415 (429)
T PRK03629 395 GMG---------------------SVLNLVSTDGRFKARLPA 415 (429)
T ss_pred CCc---------------------eEEEEEECCCCCeEECcc
Confidence 221 256677778876665543
No 44
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=2.1e-05 Score=74.26 Aligned_cols=207 Identities=11% Similarity=0.096 Sum_probs=122.0
Q ss_pred CceEEEcCCCCeeE-EEe--cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290 37 PESLAFDCNGEGPY-VGV--SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA 113 (343)
Q Consensus 37 p~~l~~d~~g~~l~-~~~--~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~ 113 (343)
..+..+.+||+.+. +.. .+..|+.+|..+++...+... .+......+++++..|+++
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~--------------------~g~~~~~~~SPDG~~la~~ 263 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF--------------------PGMTFAPRFSPDGRKVVMS 263 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC--------------------CCcccCcEECCCCCEEEEE
Confidence 45677899998554 443 245899999988766554311 1122345677744566655
Q ss_pred eCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290 114 DAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL 189 (343)
Q Consensus 114 ~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 189 (343)
... ..|+.+|.++++.+.+.... .......+.+ ||+ ++++... .+...||++|.+
T Consensus 264 ~~~~g~~~Iy~~d~~~~~~~~Lt~~~-----~~~~~~~~sp-DG~~i~f~s~~---------------~g~~~Iy~~d~~ 322 (435)
T PRK05137 264 LSQGGNTDIYTMDLRSGTTTRLTDSP-----AIDTSPSYSP-DGSQIVFESDR---------------SGSPQLYVMNAD 322 (435)
T ss_pred EecCCCceEEEEECCCCceEEccCCC-----CccCceeEcC-CCCEEEEEECC---------------CCCCeEEEEECC
Confidence 332 34999999988877664321 1233467777 465 5554321 113469999988
Q ss_pred CCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCceeeCCCCCE-EEEecc
Q 019290 190 KKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEF-WIAMNS 266 (343)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l-wi~~~~ 266 (343)
+++.+.+...........++|||+.++++.... ..|+.+++++ +..+.+.. ........+++||+. +++...
T Consensus 323 g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~----~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 323 GSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG----SGERILTS-GFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC----CceEeccC-CCCCCCCeECCCCCEEEEEEcc
Confidence 777776654333345577999999988765433 4688888765 22233322 122456678889864 443332
Q ss_pred CCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEee
Q 019290 267 ARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLD 308 (343)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~ 308 (343)
.+... ...++.+|.+|+....+.
T Consensus 398 ~~~~~-------------------~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 398 PGSGG-------------------APKLYTVDLTGRNEREVP 420 (435)
T ss_pred CCCCC-------------------cceEEEEECCCCceEEcc
Confidence 11100 026888888776555544
No 45
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.66 E-value=1e-05 Score=71.70 Aligned_cols=199 Identities=17% Similarity=0.210 Sum_probs=112.1
Q ss_pred CCceEEEcCCCCeeEEEec------------CCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290 36 GPESLAFDCNGEGPYVGVS------------DGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIK 102 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~------------~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~ 102 (343)
++.++.+|+.|++|+.++. ..+|+.||..+.+.. .|..... ........+.+.
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~--------------~~~~~s~lndl~ 67 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPD--------------IAPPDSFLNDLV 67 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CC--------------CS-TCGGEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChH--------------HcccccccceEE
Confidence 4568899999994445432 138999999887643 3322111 111233456788
Q ss_pred EeCCC-----CeEEEEeCC-CeEEEEeCCCCeEEEcccccCC-C-----------C---ccCcceeEEeC---CCCeEEE
Q 019290 103 FNPVT-----CDLYIADAY-FGLMVVGPNGGQAQQLASSAGG-I-----------P---FRFTNDLDIDP---NTGIVYF 158 (343)
Q Consensus 103 ~~~~~-----~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~-~-----------~---~~~~~~i~~d~---~dg~l~v 158 (343)
++... +.+|++|.. .||.++|.++++..++...... . . ...+.+++..+ +...||+
T Consensus 68 VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf 147 (287)
T PF03022_consen 68 VDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF 147 (287)
T ss_dssp EECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred EEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence 88633 479999976 5799999999887665322100 0 0 01133444433 1124665
Q ss_pred EeCCcccccccceeeeeecCCCceEEEEeCC---CC----------ceEEeecCCCCcceeEEecCCCEEEEEEcCCCeE
Q 019290 159 TDSSIYFQRRQYFMSIATGDRSGRLLKYDPL---KK----------NVTVMYNGLSFPNGVALSNNNSFLLLAESATLKI 225 (343)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~---~~----------~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i 225 (343)
.-.+ +..+|++..+ .. +++.+-.......|++++++| .||++....+.|
T Consensus 148 ~~ls-----------------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G-~ly~~~~~~~aI 209 (287)
T PF03022_consen 148 HPLS-----------------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNG-NLYFTDVEQNAI 209 (287)
T ss_dssp EETT------------------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTT-EEEEEECCCTEE
T ss_pred EeCC-----------------CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCC-cEEEecCCCCeE
Confidence 4432 3345655421 00 111222222456789999865 699999999999
Q ss_pred EEEEccCccccccceeeecCC---CCCCceeeCC--CCCEEEEecc
Q 019290 226 LRFWLQGERTTYTPQLFAEMP---RFPDNIKSDS--KGEFWIAMNS 266 (343)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d~--~G~lwi~~~~ 266 (343)
.+|+.+++-...+.++++..+ ..|+++.++. +|.||+.++.
T Consensus 210 ~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 210 GCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred EEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence 999988643313445555422 4699999999 9999999875
No 46
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.63 E-value=5.1e-05 Score=63.46 Aligned_cols=197 Identities=12% Similarity=0.067 Sum_probs=119.2
Q ss_pred cccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC
Q 019290 26 YQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP 105 (343)
Q Consensus 26 ~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~ 105 (343)
++.++.+. .....|.+.+++..|-++ ..-.|..||.++..-..+.. .+.....+..+.|..
T Consensus 33 ~rTiqh~d-sqVNrLeiTpdk~~LAaa-~~qhvRlyD~~S~np~Pv~t-----------------~e~h~kNVtaVgF~~ 93 (311)
T KOG0315|consen 33 SRTIQHPD-SQVNRLEITPDKKDLAAA-GNQHVRLYDLNSNNPNPVAT-----------------FEGHTKNVTAVGFQC 93 (311)
T ss_pred EEEEecCc-cceeeEEEcCCcchhhhc-cCCeeEEEEccCCCCCceeE-----------------EeccCCceEEEEEee
Confidence 45566663 357889999999844433 44457777776643211110 012223456677776
Q ss_pred CCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEE
Q 019290 106 VTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLL 184 (343)
Q Consensus 106 ~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 184 (343)
++..+|-+ ..+| +..+|.+.-..++..... ..+|.+.+.|+.+.|+++|.+ |.|.
T Consensus 94 dgrWMyTg-seDgt~kIWdlR~~~~qR~~~~~-----spVn~vvlhpnQteLis~dqs------------------g~ir 149 (311)
T KOG0315|consen 94 DGRWMYTG-SEDGTVKIWDLRSLSCQRNYQHN-----SPVNTVVLHPNQTELISGDQS------------------GNIR 149 (311)
T ss_pred cCeEEEec-CCCceEEEEeccCcccchhccCC-----CCcceEEecCCcceEEeecCC------------------CcEE
Confidence 34456665 5677 667788764444333221 457899999976889997764 6788
Q ss_pred EEeCCCCceEE-e-ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCC---CCCCceeeCCCCC
Q 019290 185 KYDPLKKNVTV-M-YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMP---RFPDNIKSDSKGE 259 (343)
Q Consensus 185 ~~d~~~~~~~~-~-~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~G~ 259 (343)
.+|........ + .........+.+.+||..|..++ ..|..|+|++-+...-..++.+.+.. ++.-...++||++
T Consensus 150 vWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k 228 (311)
T KOG0315|consen 150 VWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK 228 (311)
T ss_pred EEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc
Confidence 89986553322 2 23345578899999998765554 57889999987643213333333322 2222234688998
Q ss_pred EEEEecc
Q 019290 260 FWIAMNS 266 (343)
Q Consensus 260 lwi~~~~ 266 (343)
...++..
T Consensus 229 ~lat~ss 235 (311)
T KOG0315|consen 229 YLATCSS 235 (311)
T ss_pred EEEeecC
Confidence 8887765
No 47
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.60 E-value=0.00015 Score=68.30 Aligned_cols=141 Identities=17% Similarity=0.175 Sum_probs=85.2
Q ss_pred eeeEEEeCCCCeEEEEeCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceee
Q 019290 98 PLGIKFNPVTCDLYIADAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMS 173 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~ 173 (343)
.....+++++..|.+.... ..++.++.++++.+.+.... ......++.| ||+ |+++...
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-----~~~~~~~~SP-DG~~La~~~~~----------- 263 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-----RHNGAPAFSP-DGSKLAFALSK----------- 263 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-----CCcCCeEECC-CCCEEEEEEcC-----------
Confidence 3467788844455544222 34899999988776654321 1233578888 565 6654322
Q ss_pred eeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCc
Q 019290 174 IATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDN 251 (343)
Q Consensus 174 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~ 251 (343)
.+...||.+|.++++.+.+...........++|||+.++++.... ..||++++++ +..+.+.........
T Consensus 264 ----~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~----g~~~~lt~~~~~~~~ 335 (429)
T PRK03629 264 ----TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING----GAPQRITWEGSQNQD 335 (429)
T ss_pred ----CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC----CCeEEeecCCCCccC
Confidence 112359999998888877655444456788999999887665432 3788888765 232333222222334
Q ss_pred eeeCCCCCEEEE
Q 019290 252 IKSDSKGEFWIA 263 (343)
Q Consensus 252 i~~d~~G~lwi~ 263 (343)
..+++||+..+.
T Consensus 336 ~~~SpDG~~Ia~ 347 (429)
T PRK03629 336 ADVSSDGKFMVM 347 (429)
T ss_pred EEECCCCCEEEE
Confidence 677888864433
No 48
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.60 E-value=3.4e-05 Score=66.41 Aligned_cols=199 Identities=16% Similarity=0.199 Sum_probs=107.7
Q ss_pred CeeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290 97 RPLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA 175 (343)
Q Consensus 97 ~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~ 175 (343)
.+-||+++++.++||......+ |+.++.+ |++..-.... + ..-+-+|+.-. ++.+.+++..
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~-g--~~D~EgI~y~g-~~~~vl~~Er------------- 84 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD-G--FGDYEGITYLG-NGRYVLSEER------------- 84 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S-S---SSEEEEEE-S-TTEEEEEETT-------------
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC-C--CCCceeEEEEC-CCEEEEEEcC-------------
Confidence 4679999997788988755444 9999987 4443322221 1 23467888877 4777776633
Q ss_pred ecCCCceEEEEeC--CCCce-----EEee-----cCCCCcceeEEecCCCEEEEEEc-CCCeEEEEEc--cCccc-cccc
Q 019290 176 TGDRSGRLLKYDP--LKKNV-----TVMY-----NGLSFPNGVALSNNNSFLLLAES-ATLKILRFWL--QGERT-TYTP 239 (343)
Q Consensus 176 ~~~~~~~v~~~d~--~~~~~-----~~~~-----~~~~~~~~i~~~~d~~~lyv~~~-~~~~i~~~~~--~~~~~-~~~~ 239 (343)
.+.++.++. .+... ..+. .+-....|+|+++.++.||++.. ....|+.++. .+... ....
T Consensus 85 ----~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~ 160 (248)
T PF06977_consen 85 ----DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD 160 (248)
T ss_dssp ----TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred ----CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence 345655544 22221 1111 12234689999999888888743 3345666664 11110 0000
Q ss_pred eeee-c--CCCCCCceeeCCC-CCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCC---
Q 019290 240 QLFA-E--MPRFPDNIKSDSK-GEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEG--- 312 (343)
Q Consensus 240 ~~~~-~--~~~~p~~i~~d~~-G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~--- 312 (343)
..+. . .-.-+.++.+|+. |++||-+.. ...|..+|.+|+.+..+....+
T Consensus 161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e------------------------s~~l~~~d~~G~~~~~~~L~~g~~g 216 (248)
T PF06977_consen 161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDE------------------------SRLLLELDRQGRVVSSLSLDRGFHG 216 (248)
T ss_dssp HHHH-HT--SS---EEEEETTTTEEEEEETT------------------------TTEEEEE-TT--EEEEEE-STTGGG
T ss_pred cccccccceeccccceEEcCCCCeEEEEECC------------------------CCeEEEECCCCCEEEEEEeCCcccC
Confidence 0000 0 0113778888885 789999877 4578899999999888876554
Q ss_pred --CccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290 313 --NTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK 342 (343)
Q Consensus 313 --~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~ 342 (343)
..+..+-++..+ +|+|||.+- .|..+|++
T Consensus 217 l~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f~ 248 (248)
T PF06977_consen 217 LSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRFE 248 (248)
T ss_dssp -SS---SEEEEEE-TT--EEEEET-TTEEEEEE
T ss_pred cccccCCccEEEECCCCCEEEEcC-CceEEEeC
Confidence 123455555555 899999996 66777763
No 49
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.60 E-value=3.9e-05 Score=73.20 Aligned_cols=185 Identities=14% Similarity=0.157 Sum_probs=120.0
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCe-EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGW-TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
.-.++++.|||.++.++..+|.|-.||...+-. ..|. .......++.+.. .++..++.
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt--------------------eHts~Vt~v~f~~-~g~~llss 410 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT--------------------EHTSGVTAVQFTA-RGNVLLSS 410 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec--------------------cCCCceEEEEEEe-cCCEEEEe
Confidence 467999999999888999999999999765422 1221 1223467899998 56655554
Q ss_pred CCCe-EEEEeCCCCe-EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290 115 AYFG-LMVVGPNGGQ-AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN 192 (343)
Q Consensus 115 ~~~g-i~~~d~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 192 (343)
.-+| |..+|..-.+ ++.+ ..+. -.....+++|+. |.+.++..-. .-.|+.++.++|+
T Consensus 411 SLDGtVRAwDlkRYrNfRTf-t~P~---p~QfscvavD~s-GelV~AG~~d----------------~F~IfvWS~qTGq 469 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRYRNFRTF-TSPE---PIQFSCVAVDPS-GELVCAGAQD----------------SFEIFVWSVQTGQ 469 (893)
T ss_pred ecCCeEEeeeecccceeeee-cCCC---ceeeeEEEEcCC-CCEEEeeccc----------------eEEEEEEEeecCe
Confidence 5566 8888876432 2222 1111 135678999995 8887754331 2358899999998
Q ss_pred eEEeecCCCC-cceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCC-CEEEEecc
Q 019290 193 VTVMYNGLSF-PNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKG-EFWIAMNS 266 (343)
Q Consensus 193 ~~~~~~~~~~-~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwi~~~~ 266 (343)
...+..+-.. ..+++|++++..| ++.+-+.+|.+|++-+.. +..+.+. .....-++.+.|+| +|-+++.+
T Consensus 470 llDiLsGHEgPVs~l~f~~~~~~L-aS~SWDkTVRiW~if~s~--~~vEtl~-i~sdvl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 470 LLDILSGHEGPVSGLSFSPDGSLL-ASGSWDKTVRIWDIFSSS--GTVETLE-IRSDVLAVSFRPDGKELAVATLD 541 (893)
T ss_pred eeehhcCCCCcceeeEEccccCeE-EeccccceEEEEEeeccC--ceeeeEe-eccceeEEEEcCCCCeEEEEEec
Confidence 8766665554 4678999999855 566678999999976421 1223321 11123345667777 56666655
No 50
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.59 E-value=7.3e-05 Score=70.16 Aligned_cols=206 Identities=16% Similarity=0.157 Sum_probs=119.9
Q ss_pred ceEEEcCCCCeeEEEe-cC--CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 38 ESLAFDCNGEGPYVGV-SD--GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 38 ~~l~~d~~g~~l~~~~-~~--g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
.+..++++|+.+++.. .+ ..|+.+|..++....+.. ..+....+.++++++.|+++.
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--------------------~~~~~~~~~~spDg~~l~~~~ 252 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--------------------FPGMNGAPAFSPDGSKLAVSL 252 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--------------------CCCCccceEECCCCCEEEEEE
Confidence 4566889999665433 22 479999988776554421 011223466787455677654
Q ss_pred CCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290 115 AYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK 190 (343)
Q Consensus 115 ~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 190 (343)
... .|+.++.++++.+.+.... . ......+.+ ||+ |+++... .....||.+|..+
T Consensus 253 ~~~~~~~i~~~d~~~~~~~~l~~~~-~----~~~~~~~s~-dg~~l~~~s~~---------------~g~~~iy~~d~~~ 311 (417)
T TIGR02800 253 SKDGNPDIYVMDLDGKQLTRLTNGP-G----IDTEPSWSP-DGKSIAFTSDR---------------GGSPQIYMMDADG 311 (417)
T ss_pred CCCCCccEEEEECCCCCEEECCCCC-C----CCCCEEECC-CCCEEEEEECC---------------CCCceEEEEECCC
Confidence 332 4999999988776653221 1 122345666 454 5443321 1134699999887
Q ss_pred CceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEeccC
Q 019290 191 KNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNSA 267 (343)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~~ 267 (343)
++...+..........+++++++.++++.... ..|+.+++.+ +..+.+... .......+.++|+ |+++...
T Consensus 312 ~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~----~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~- 385 (417)
T TIGR02800 312 GEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG----GGERVLTDT-GLDESPSFAPNGRMILYATTR- 385 (417)
T ss_pred CCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC----CCeEEccCC-CCCCCceECCCCCEEEEEEeC-
Confidence 77766554444456778999999888876533 3788888765 222333221 1233446778885 4444443
Q ss_pred CCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCC
Q 019290 268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNE 311 (343)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~ 311 (343)
.. ...++.++.+|+....+..+.
T Consensus 386 ~~---------------------~~~l~~~~~~g~~~~~~~~~~ 408 (417)
T TIGR02800 386 GG---------------------RGVLGLVSTDGRFRARLPLGN 408 (417)
T ss_pred CC---------------------cEEEEEEECCCceeeECCCCC
Confidence 22 125566667787766665443
No 51
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.59 E-value=0.00011 Score=66.50 Aligned_cols=216 Identities=12% Similarity=0.095 Sum_probs=114.0
Q ss_pred CccccccccCCC------CCCCceEEEcCCCCeeEEEe-c-CCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccC
Q 019290 22 SSKSYQQLQLPG------VVGPESLAFDCNGEGPYVGV-S-DGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLE 92 (343)
Q Consensus 22 ~~~~~~~~~~~~------~~~p~~l~~d~~g~~l~~~~-~-~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 92 (343)
+.+..+++++|. ...|+.+++++||+.+|+.. . ...+-.+|..++++. ++.
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~-------------------- 145 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD-------------------- 145 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe--------------------
Confidence 366677888873 23455999999999889664 3 678999998876543 231
Q ss_pred CCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcc----cccCCCCccCcceeEEeCCCCeEEEEeCCcccccc
Q 019290 93 PLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLA----SSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRR 168 (343)
Q Consensus 93 ~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~----~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~ 168 (343)
...++......++...+.+.|...-...++.+ |+...-. ......-+..+ ... ...+..+|++.
T Consensus 146 -vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~-g~~~~~~~~vf~~~~~~v~~rP-~~~-~~dg~~~~vs~-------- 213 (352)
T TIGR02658 146 -VPDCYHIFPTANDTFFMHCRDGSLAKVGYGTK-GNPKIKPTEVFHPEDEYLINHP-AYS-NKSGRLVWPTY-------- 213 (352)
T ss_pred -CCCCcEEEEecCCccEEEeecCceEEEEecCC-CceEEeeeeeecCCccccccCC-ceE-cCCCcEEEEec--------
Confidence 11112222222212223333211112222222 2222110 11111112223 111 21224566643
Q ss_pred cceeeeeecCCCceEEEEeCCCCceEE-----eec-----CCCCcce---eEEecCCCEEEEEE---------cCCCeEE
Q 019290 169 QYFMSIATGDRSGRLLKYDPLKKNVTV-----MYN-----GLSFPNG---VALSNNNSFLLLAE---------SATLKIL 226 (343)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~d~~~~~~~~-----~~~-----~~~~~~~---i~~~~d~~~lyv~~---------~~~~~i~ 226 (343)
.|.|+.+|..+..... ... ..-.|.+ ++++++++++|+.. ..++.|+
T Consensus 214 -----------eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 214 -----------TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred -----------CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 3578888854322211 111 1223444 99999999999953 2236899
Q ss_pred EEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEE
Q 019290 227 RFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVV 304 (343)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~ 304 (343)
++|..+.. ..........|.++++++||+ +.++++.. .+.|..+|. .++.+
T Consensus 283 ViD~~t~k----vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~-----------------------s~~VsViD~~t~k~i 335 (352)
T TIGR02658 283 VVDAKTGK----RLRKIELGHEIDSINVSQDAKPLLYALSTG-----------------------DKTLYIFDAETGKEL 335 (352)
T ss_pred EEECCCCe----EEEEEeCCCceeeEEECCCCCeEEEEeCCC-----------------------CCcEEEEECcCCeEE
Confidence 99976522 211122344688999999998 55555531 246788997 57777
Q ss_pred EEe
Q 019290 305 DVL 307 (343)
Q Consensus 305 ~~~ 307 (343)
..+
T Consensus 336 ~~i 338 (352)
T TIGR02658 336 SSV 338 (352)
T ss_pred eee
Confidence 766
No 52
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=0.00017 Score=67.52 Aligned_cols=204 Identities=9% Similarity=0.023 Sum_probs=123.9
Q ss_pred eEEEcCCCCe-eE-EEec--CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 39 SLAFDCNGEG-PY-VGVS--DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 39 ~l~~d~~g~~-l~-~~~~--~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
...+++||+. +| +... ...||.+|..+++...+... .+......+++++..|.+..
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~--------------------~g~~~~~~~SPDG~~la~~~ 251 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS--------------------QGMLVVSDVSKDGSKLLLTM 251 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC--------------------CCcEEeeEECCCCCEEEEEE
Confidence 6778999973 55 3433 35799999988877666421 11112234677445666553
Q ss_pred CC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290 115 AY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK 190 (343)
Q Consensus 115 ~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 190 (343)
.. ..|+.++.++++.+++..... .-....+.| || +|+++... .....||++|.++
T Consensus 252 ~~~g~~~Iy~~dl~~g~~~~LT~~~~-----~d~~p~~SP-DG~~I~F~Sdr---------------~g~~~Iy~~dl~~ 310 (419)
T PRK04043 252 APKGQPDIYLYDTNTKTLTQITNYPG-----IDVNGNFVE-DDKRIVFVSDR---------------LGYPNIFMKKLNS 310 (419)
T ss_pred ccCCCcEEEEEECCCCcEEEcccCCC-----ccCccEECC-CCCEEEEEECC---------------CCCceEEEEECCC
Confidence 32 349999998888777643211 112235777 45 57775432 1134699999998
Q ss_pred CceEEeecCCCCcceeEEecCCCEEEEEEcCC--------CeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EE
Q 019290 191 KNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--------LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FW 261 (343)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lw 261 (343)
++.+++..... .+ ..++|||+.+.++.... ..|+.+++++ ++.+.+... +......+.+||+ |+
T Consensus 311 g~~~rlt~~g~-~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~----g~~~~LT~~-~~~~~p~~SPDG~~I~ 383 (419)
T PRK04043 311 GSVEQVVFHGK-NN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS----DYIRRLTAN-GVNQFPRFSSDGGSIM 383 (419)
T ss_pred CCeEeCccCCC-cC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC----CCeEECCCC-CCcCCeEECCCCCEEE
Confidence 88866653322 22 47899999887765432 4789998876 333444332 2223456789986 55
Q ss_pred EEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCC
Q 019290 262 IAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEG 312 (343)
Q Consensus 262 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~ 312 (343)
+++.. +. ...++.++.+|.....+....+
T Consensus 384 f~~~~-~~---------------------~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 384 FIKYL-GN---------------------QSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred EEEcc-CC---------------------cEEEEEEecCCCeeEEeecCCC
Confidence 55543 22 2368888889887666654333
No 53
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=0.00015 Score=68.66 Aligned_cols=139 Identities=13% Similarity=0.059 Sum_probs=82.5
Q ss_pred eEEEeCCCCeEEEEeCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeee
Q 019290 100 GIKFNPVTCDLYIADAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIA 175 (343)
Q Consensus 100 gi~~~~~~~~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~ 175 (343)
...+++++..|+++.... .|+.+|.++++.+.+.... + .....++.+ ||+ ++++...
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g----~~~~~~wSP-DG~~La~~~~~------------- 282 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-G----INGAPRFSP-DGKKLALVLSK------------- 282 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-C----CcCCeeECC-CCCEEEEEEeC-------------
Confidence 456777455565553322 4999999988776653221 1 123567888 465 6654322
Q ss_pred ecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcC--CCeEEEEEccCccccccceeeecCCCCCCcee
Q 019290 176 TGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESA--TLKILRFWLQGERTTYTPQLFAEMPRFPDNIK 253 (343)
Q Consensus 176 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 253 (343)
.+...||.+|.++++.+.+..........++++|++.++++... ...||++++++ ++.+.+...........
T Consensus 283 --~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~----g~~~~Lt~~g~~~~~~~ 356 (448)
T PRK04792 283 --DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS----GKVSRLTFEGEQNLGGS 356 (448)
T ss_pred --CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC----CCEEEEecCCCCCcCee
Confidence 11346999999888877665443344567889999988877543 35688888765 22222221111123456
Q ss_pred eCCCCCEEEE
Q 019290 254 SDSKGEFWIA 263 (343)
Q Consensus 254 ~d~~G~lwi~ 263 (343)
+++||+..+.
T Consensus 357 ~SpDG~~l~~ 366 (448)
T PRK04792 357 ITPDGRSMIM 366 (448)
T ss_pred ECCCCCEEEE
Confidence 7888854333
No 54
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.56 E-value=4.6e-05 Score=63.70 Aligned_cols=183 Identities=14% Similarity=0.159 Sum_probs=115.7
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
+...+.|..+|+.+|++.++|.+-.||.......+. ......++.+.+++.+..|+++|.
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~--------------------~~~~spVn~vvlhpnQteLis~dq 144 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN--------------------YQHNSPVNTVVLHPNQTELISGDQ 144 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchh--------------------ccCCCCcceEEecCCcceEEeecC
Confidence 456777889999889999999999999876443322 122234578999997788999864
Q ss_pred CCeEEEEeCCCCeEEEc-ccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290 116 YFGLMVVGPNGGQAQQL-ASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT 194 (343)
Q Consensus 116 ~~gi~~~d~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 194 (343)
...|+.+|+........ .+. ....+.++++++ ||.+.++... .|+.|+++.-++...
T Consensus 145 sg~irvWDl~~~~c~~~liPe----~~~~i~sl~v~~-dgsml~a~nn-----------------kG~cyvW~l~~~~~~ 202 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIPE----DDTSIQSLTVMP-DGSMLAAANN-----------------KGNCYVWRLLNHQTA 202 (311)
T ss_pred CCcEEEEEccCCccccccCCC----CCcceeeEEEcC-CCcEEEEecC-----------------CccEEEEEccCCCcc
Confidence 44499999976543332 221 125688999999 6998886554 677787776543321
Q ss_pred -Eee--cCC----CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCc---eeeCCCCCEEEEe
Q 019290 195 -VMY--NGL----SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDN---IKSDSKGEFWIAM 264 (343)
Q Consensus 195 -~~~--~~~----~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~---i~~d~~G~lwi~~ 264 (343)
.+. ..+ ...-...++||+++|- +.+.+..+.+|+.++- ++.-..+.+.-.. -+++.||+..++.
T Consensus 203 s~l~P~~k~~ah~~~il~C~lSPd~k~la-t~ssdktv~iwn~~~~-----~kle~~l~gh~rWvWdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 203 SELEPVHKFQAHNGHILRCLLSPDVKYLA-TCSSDKTVKIWNTDDF-----FKLELVLTGHQRWVWDCAFSADGEYLVTA 276 (311)
T ss_pred ccceEhhheecccceEEEEEECCCCcEEE-eecCCceEEEEecCCc-----eeeEEEeecCCceEEeeeeccCccEEEec
Confidence 111 111 2233445789988654 5556889999997662 1111112222222 3567889877775
Q ss_pred cc
Q 019290 265 NS 266 (343)
Q Consensus 265 ~~ 266 (343)
..
T Consensus 277 ss 278 (311)
T KOG0315|consen 277 SS 278 (311)
T ss_pred CC
Confidence 54
No 55
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.56 E-value=3.8e-05 Score=66.03 Aligned_cols=193 Identities=13% Similarity=0.137 Sum_probs=116.0
Q ss_pred CCceEEEcCCCCeeEEEec-CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 36 GPESLAFDCNGEGPYVGVS-DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~-~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
+..+|.++++-+.||+.++ ...|+.++.++.-+..++. .....|.+|.+.. +|...+++
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL-------------------~g~~DpE~Ieyig-~n~fvi~d 146 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL-------------------TGFSDPETIEYIG-GNQFVIVD 146 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc-------------------cccCChhHeEEec-CCEEEEEe
Confidence 4789999999888886654 4568888877765555532 2233467777775 55555555
Q ss_pred CCCe-EEE--EeCCCCeEEEcc---cc-cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEe
Q 019290 115 AYFG-LMV--VGPNGGQAQQLA---SS-AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYD 187 (343)
Q Consensus 115 ~~~g-i~~--~d~~~~~~~~~~---~~-~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 187 (343)
...+ ++. +|.++....... +. ..........++|.|+.+.++|++-..+ .-+||.++
T Consensus 147 ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~----------------P~~I~~~~ 210 (316)
T COG3204 147 ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN----------------PIGIFEVT 210 (316)
T ss_pred hhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC----------------CcEEEEEe
Confidence 4333 444 455543221110 11 1111245678999999778899964321 34677776
Q ss_pred CCCCceEEeecC---------CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee------c-CCCCCCc
Q 019290 188 PLKKNVTVMYNG---------LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA------E-MPRFPDN 251 (343)
Q Consensus 188 ~~~~~~~~~~~~---------~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~------~-~~~~p~~ 251 (343)
........-... +....++.+++..+.|+|-+...+.|..++..|.-. ....... . .+ .++|
T Consensus 211 ~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~-~~lsL~~g~~gL~~dip-qaEG 288 (316)
T COG3204 211 QSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVI-ELLSLTKGNHGLSSDIP-QAEG 288 (316)
T ss_pred cCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCee-eeEEeccCCCCCcccCC-Ccce
Confidence 432222111100 123567888877778888888888888888877421 1111111 1 22 3889
Q ss_pred eeeCCCCCEEEEecc
Q 019290 252 IKSDSKGEFWIAMNS 266 (343)
Q Consensus 252 i~~d~~G~lwi~~~~ 266 (343)
++.|.+|+|||++-.
T Consensus 289 iamDd~g~lYIvSEP 303 (316)
T COG3204 289 IAMDDDGNLYIVSEP 303 (316)
T ss_pred eEECCCCCEEEEecC
Confidence 999999999999864
No 56
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=0.00013 Score=68.85 Aligned_cols=138 Identities=15% Similarity=0.154 Sum_probs=82.9
Q ss_pred eeEEEeCCCCeEEEEeCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeee
Q 019290 99 LGIKFNPVTCDLYIADAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSI 174 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~ 174 (343)
.+..++++++.|+++... ..|+.+|.++++.+.+.... + .....++.+ ||+ ++++...
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-g----~~~~~~~Sp-DG~~l~~~~s~------------ 268 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR-G----INGAPSFSP-DGRRLALTLSR------------ 268 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-C----CccCceECC-CCCEEEEEEeC------------
Confidence 345667745566665433 23999999888776653221 1 123567888 464 6554322
Q ss_pred eecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCce
Q 019290 175 ATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNI 252 (343)
Q Consensus 175 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i 252 (343)
.+...||.+|.++++.+.+..........++++||+.++++.... ..||++++++ +..+.+..........
T Consensus 269 ---~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~----g~~~~lt~~g~~~~~~ 341 (433)
T PRK04922 269 ---DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG----GSAERLTFQGNYNARA 341 (433)
T ss_pred ---CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC----CCeEEeecCCCCccCE
Confidence 113469999998888776654433345678999999888775443 3588888765 2223332222223356
Q ss_pred eeCCCCCEE
Q 019290 253 KSDSKGEFW 261 (343)
Q Consensus 253 ~~d~~G~lw 261 (343)
.++++|+..
T Consensus 342 ~~SpDG~~I 350 (433)
T PRK04922 342 SVSPDGKKI 350 (433)
T ss_pred EECCCCCEE
Confidence 788888643
No 57
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.53 E-value=0.00015 Score=66.75 Aligned_cols=175 Identities=18% Similarity=0.232 Sum_probs=101.8
Q ss_pred CCeeE-EEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCee-eEEEeCCCCeEEEEeCCCeEEEE
Q 019290 46 GEGPY-VGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPL-GIKFNPVTCDLYIADAYFGLMVV 122 (343)
Q Consensus 46 g~~l~-~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-gi~~~~~~~~l~v~~~~~gi~~~ 122 (343)
+++++ +...++.|..+|..+.+.. ++. ....++ ++.+.++++.+|+++....|.++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~---------------------~~~~~h~~~~~s~Dgr~~yv~~rdg~vsvi 63 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIP---------------------TGGAPHAGLKFSPDGRYLYVANRDGTVSVI 63 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE----------------------STTEEEEEE-TT-SSEEEEEETTSEEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEc---------------------CCCCceeEEEecCCCCEEEEEcCCCeEEEE
Confidence 45455 4456789999998876533 332 112334 57788856679999755559999
Q ss_pred eCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecC--
Q 019290 123 GPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNG-- 199 (343)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-- 199 (343)
|+.++++..-... + ..+.++++.+ ||+ +++++.. .+.+..+|.++.+.......
T Consensus 64 D~~~~~~v~~i~~--G---~~~~~i~~s~-DG~~~~v~n~~-----------------~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 64 DLATGKVVATIKV--G---GNPRGIAVSP-DGKYVYVANYE-----------------PGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp ETTSSSEEEEEE---S---SEEEEEEE---TTTEEEEEEEE-----------------TTEEEEEETTT--EEEEEE--E
T ss_pred ECCcccEEEEEec--C---CCcceEEEcC-CCCEEEEEecC-----------------CCceeEeccccccceeeccccc
Confidence 9998875433222 2 3578999998 565 6665543 56788999877665432211
Q ss_pred ------CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290 200 ------LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 200 ------~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
.++..++..++.....+++-...++|+.++...... ... ...+...+|.+..+|++|+.+++...
T Consensus 121 ~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-~~~-~~i~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 121 MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN-LKV-TTIKVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC-EEE-EEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc-cce-eeecccccccccccCcccceeeeccc
Confidence 123456666676665666667789999999765322 111 12224446888899999987655433
No 58
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=0.00023 Score=67.03 Aligned_cols=138 Identities=11% Similarity=0.098 Sum_probs=80.5
Q ss_pred eeEEEeCCCCeEEEEeCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeee
Q 019290 99 LGIKFNPVTCDLYIADAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSI 174 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~ 174 (343)
....++++++.|+++.... .|+.+|.++++.+.+.... ......++.| || .++++...
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-----g~~~~~~~SP-DG~~la~~~~~------------ 260 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-----GSNSAPAWSP-DGRTLAVALSR------------ 260 (427)
T ss_pred ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-----CCccceEECC-CCCEEEEEEcc------------
Confidence 3567777555676654332 3999999988776653221 1234567888 46 46554322
Q ss_pred eecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcC--CCeEEEEEccCccccccceeeecCCCCCCce
Q 019290 175 ATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESA--TLKILRFWLQGERTTYTPQLFAEMPRFPDNI 252 (343)
Q Consensus 175 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i 252 (343)
.+...||.+|.+++..+.+...........+++||+.++++... ...||.++.++ +..+.+..........
T Consensus 261 ---~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~----g~~~~lt~~g~~~~~~ 333 (427)
T PRK02889 261 ---DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG----GAAQRVTFTGSYNTSP 333 (427)
T ss_pred ---CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC----CceEEEecCCCCcCce
Confidence 11346999998877766654433334456799999988776543 34677777654 2222222111122345
Q ss_pred eeCCCCCEE
Q 019290 253 KSDSKGEFW 261 (343)
Q Consensus 253 ~~d~~G~lw 261 (343)
.++++|+..
T Consensus 334 ~~SpDG~~I 342 (427)
T PRK02889 334 RISPDGKLL 342 (427)
T ss_pred EECCCCCEE
Confidence 678888643
No 59
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=0.0003 Score=66.35 Aligned_cols=138 Identities=12% Similarity=0.170 Sum_probs=81.3
Q ss_pred eeEEEeCCCCeEEEEeCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeee
Q 019290 99 LGIKFNPVTCDLYIADAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSI 174 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~ 174 (343)
....++++++.|.+.... ..|+.++.++++.+.+.... + ......+.| ||+ ++++...
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~-g----~~~~~~~Sp-DG~~la~~~~~------------ 263 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE-G----LNGAPAWSP-DGSKLAFVLSK------------ 263 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-C----CcCCeEECC-CCCEEEEEEcc------------
Confidence 456677755566554332 24999999988877664321 1 123467888 464 6554432
Q ss_pred eecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcC--CCeEEEEEccCccccccceeeecCCCCCCce
Q 019290 175 ATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESA--TLKILRFWLQGERTTYTPQLFAEMPRFPDNI 252 (343)
Q Consensus 175 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i 252 (343)
.+...||.+|.++++.+.+...........+++|++.++++... ...|+++++.+ ++.+.+..........
T Consensus 264 ---~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~----g~~~~lt~~~~~~~~~ 336 (430)
T PRK00178 264 ---DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG----GRAERVTFVGNYNARP 336 (430)
T ss_pred ---CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC----CCEEEeecCCCCccce
Confidence 11346999999888877655433334456789999988876543 34788888765 2222222111112234
Q ss_pred eeCCCCCEE
Q 019290 253 KSDSKGEFW 261 (343)
Q Consensus 253 ~~d~~G~lw 261 (343)
..+++|+..
T Consensus 337 ~~Spdg~~i 345 (430)
T PRK00178 337 RLSADGKTL 345 (430)
T ss_pred EECCCCCEE
Confidence 667887543
No 60
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.49 E-value=2.4e-05 Score=72.94 Aligned_cols=183 Identities=15% Similarity=0.145 Sum_probs=107.0
Q ss_pred CCCCCCceEEEcCCCCeeEEEec-CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC----
Q 019290 32 PGVVGPESLAFDCNGEGPYVGVS-DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV---- 106 (343)
Q Consensus 32 ~~~~~p~~l~~d~~g~~l~~~~~-~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~---- 106 (343)
.++..|.+|++.++|+ +|+... .|+|+++++.++....+...+... .....+...||+++++
T Consensus 27 ~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~v~------------~~~ge~GLlglal~PdF~~~ 93 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPEIV------------NDAQHNGLLGLALHPDFMQE 93 (454)
T ss_pred CCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCcee------------ccCCCCceeeEEECCCcccc
Confidence 3788999999999998 666665 699999987665433332111000 0012345789999863
Q ss_pred --CCeEEEEeC----------CCeEEEEeCCC--Ce---EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccc---
Q 019290 107 --TCDLYIADA----------YFGLMVVGPNG--GQ---AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQ--- 166 (343)
Q Consensus 107 --~~~l~v~~~----------~~gi~~~d~~~--~~---~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~--- 166 (343)
++.||++-+ ...|.++..+. .. .+.+.........+.-..|++++ ||.||++.......
T Consensus 94 ~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~ 172 (454)
T TIGR03606 94 KGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGA 172 (454)
T ss_pred CCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcc
Confidence 346898731 24577776532 11 12222222111234456789999 69999987553110
Q ss_pred ----ccccee-----ee---eecCCCceEEEEeCCCCc-----------eEEeecCCCCcceeEEecCCCEEEEEEcCC-
Q 019290 167 ----RRQYFM-----SI---ATGDRSGRLLKYDPLKKN-----------VTVMYNGLSFPNGVALSNNNSFLLLAESAT- 222 (343)
Q Consensus 167 ----~~~~~~-----~~---~~~~~~~~v~~~d~~~~~-----------~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~- 222 (343)
...... .+ ......|+|+|+++++.- .+.+..+++.|.++++++++ .||+++-..
T Consensus 173 n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G-~Lw~~e~Gp~ 251 (454)
T TIGR03606 173 NFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDG-TLYASEQGPN 251 (454)
T ss_pred cccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCC-CEEEEecCCC
Confidence 000000 00 001125789999987431 24556678889999999965 588887543
Q ss_pred --CeEEEEE
Q 019290 223 --LKILRFW 229 (343)
Q Consensus 223 --~~i~~~~ 229 (343)
..|.++.
T Consensus 252 ~~DEiN~I~ 260 (454)
T TIGR03606 252 SDDELNIIV 260 (454)
T ss_pred CCcEEEEec
Confidence 4455544
No 61
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.48 E-value=0.0001 Score=69.53 Aligned_cols=202 Identities=16% Similarity=0.195 Sum_probs=117.1
Q ss_pred CceEEEcCCCCeeEE-Eec--CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290 37 PESLAFDCNGEGPYV-GVS--DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA 113 (343)
Q Consensus 37 p~~l~~d~~g~~l~~-~~~--~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~ 113 (343)
..++.++|||+.+.+ +.. +..|+.+|..+++...+... .+......+++++..|.++
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~--------------------~g~~~~~~wSPDG~~La~~ 265 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF--------------------RGHNGAPAFSPDGSRLAFA 265 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC--------------------CCccCceeECCCCCEEEEE
Confidence 467889999985543 332 24699999887665444211 0111246788844567665
Q ss_pred eCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290 114 DAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL 189 (343)
Q Consensus 114 ~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 189 (343)
.... .|+.+|.++++.+.+.... .......+.+ ||+ |+++... .+...||.++..
T Consensus 266 ~~~~g~~~Iy~~d~~~~~~~~lt~~~-----~~~~~~~wSp-DG~~i~f~s~~---------------~g~~~I~~~~~~ 324 (429)
T PRK01742 266 SSKDGVLNIYVMGANGGTPSQLTSGA-----GNNTEPSWSP-DGQSILFTSDR---------------SGSPQVYRMSAS 324 (429)
T ss_pred EecCCcEEEEEEECCCCCeEeeccCC-----CCcCCEEECC-CCCEEEEEECC---------------CCCceEEEEECC
Confidence 3333 3888999888776653211 1245678888 565 5554321 113468888877
Q ss_pred CCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCC
Q 019290 190 KKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARG 269 (343)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~ 269 (343)
++..+.+ ... . ....++|||+.++++.. ..++++++.+ +..+.+... .......++++|+..+.....+.
T Consensus 325 ~~~~~~l-~~~-~-~~~~~SpDG~~ia~~~~--~~i~~~Dl~~----g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~ 394 (429)
T PRK01742 325 GGGASLV-GGR-G-YSAQISADGKTLVMING--DNVVKQDLTS----GSTEVLSST-FLDESPSISPNGIMIIYSSTQGL 394 (429)
T ss_pred CCCeEEe-cCC-C-CCccCCCCCCEEEEEcC--CCEEEEECCC----CCeEEecCC-CCCCCceECCCCCEEEEEEcCCC
Confidence 6655544 221 1 34678899998877653 5688888765 222222211 11234568899976665443222
Q ss_pred ccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCC
Q 019290 270 KIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGN 310 (343)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~ 310 (343)
. ..++..+.+|+....+...
T Consensus 395 ~---------------------~~l~~~~~~G~~~~~l~~~ 414 (429)
T PRK01742 395 G---------------------KVLQLVSADGRFKARLPGS 414 (429)
T ss_pred c---------------------eEEEEEECCCCceEEccCC
Confidence 1 1344456788776666533
No 62
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.47 E-value=2.9e-05 Score=66.56 Aligned_cols=164 Identities=18% Similarity=0.232 Sum_probs=104.9
Q ss_pred cccccccCCCCCCCceEEEcCCCCeeE-EEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290 24 KSYQQLQLPGVVGPESLAFDCNGEGPY-VGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI 101 (343)
Q Consensus 24 ~~~~~~~~~~~~~p~~l~~d~~g~~l~-~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi 101 (343)
+..++..+|.-.-.|+|+.-.+ + +| .....+..+.||+++-+ ...|. -.+...|+
T Consensus 79 ~~~~~~~l~~~~FgEGit~~~d-~-l~qLTWk~~~~f~yd~~tl~~~~~~~---------------------y~~EGWGL 135 (264)
T PF05096_consen 79 KVLQSVPLPPRYFGEGITILGD-K-LYQLTWKEGTGFVYDPNTLKKIGTFP---------------------YPGEGWGL 135 (264)
T ss_dssp SEEEEEE-TTT--EEEEEEETT-E-EEEEESSSSEEEEEETTTTEEEEEEE----------------------SSS--EE
T ss_pred cEEEEEECCccccceeEEEECC-E-EEEEEecCCeEEEEccccceEEEEEe---------------------cCCcceEE
Confidence 4456667775456788888743 3 56 66678889999998742 22332 12345788
Q ss_pred EEeCCCCeEEEEeCCCeEEEEeCCCCeEEE-cccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCC
Q 019290 102 KFNPVTCDLYIADAYFGLMVVGPNGGQAQQ-LASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRS 180 (343)
Q Consensus 102 ~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~-~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~ 180 (343)
+.+ +..||++|..+.|+.+|+++-+... +.-...+.+...+|.+-.-. |.+|.--.. .
T Consensus 136 t~d--g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~--G~IyANVW~-----------------t 194 (264)
T PF05096_consen 136 TSD--GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYIN--GKIYANVWQ-----------------T 194 (264)
T ss_dssp EEC--SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEET--TEEEEEETT-----------------S
T ss_pred EcC--CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEc--CEEEEEeCC-----------------C
Confidence 855 6789999877789999998754433 22233455667788887764 899984433 5
Q ss_pred ceEEEEeCCCCceEEeec----------C------CCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290 181 GRLLKYDPLKKNVTVMYN----------G------LSFPNGVALSNNNSFLLLAESATLKILRFWLQ 231 (343)
Q Consensus 181 ~~v~~~d~~~~~~~~~~~----------~------~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~ 231 (343)
..|.++||.+|++..... . ..-.||||++++.+.+|++.-.-..++.+.+.
T Consensus 195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 689999999999875321 1 12369999999999999999888888887753
No 63
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.44 E-value=0.00015 Score=66.20 Aligned_cols=184 Identities=17% Similarity=0.090 Sum_probs=93.9
Q ss_pred CCCCCceEEEcCCCCeeEEEecC-CEEEEEEcCCCCeEEeeecCCC---ccccccCCCCCcccCCCcCCeeeEEEeCCCC
Q 019290 33 GVVGPESLAFDCNGEGPYVGVSD-GRILKWKAANSGWTEFATTAPH---RAREICDGSTNTTLEPLCGRPLGIKFNPVTC 108 (343)
Q Consensus 33 ~~~~p~~l~~d~~g~~l~~~~~~-g~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~ 108 (343)
++..|..+...++|. +.+.... |.+................... ....+.+....+........++++++. ++
T Consensus 65 gLe~p~~~~~lP~G~-~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~~--~~ 141 (399)
T COG2133 65 GLEHPWGLARLPDGV-LLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISEP--GG 141 (399)
T ss_pred cccCchhheecCCce-EEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeeeEEEee--cC
Confidence 556789999999995 4444333 6555443211110000000000 000000000111111223346777776 46
Q ss_pred eEEEEeCCCeEEEEeCCCCeEE---EcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccc-----eeeeeecCCC
Q 019290 109 DLYIADAYFGLMVVGPNGGQAQ---QLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQY-----FMSIATGDRS 180 (343)
Q Consensus 109 ~l~v~~~~~gi~~~d~~~~~~~---~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~-----~~~~~~~~~~ 180 (343)
.+|+++ ...+.+++....++. .+..........+-..|++++ ||.||++..+..-...-+ ...+.+.. .
T Consensus 142 ~~~~~n-~~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~p-DG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~-~ 218 (399)
T COG2133 142 GLYVAN-RVAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGP-DGKLYVTTGSNGDPALAQDNVSLAGKVLRID-R 218 (399)
T ss_pred CceEEE-EEEEEEcCCCccccccccEEeecCCCCCCcCcccEEECC-CCcEEEEeCCCCCcccccCccccccceeeec-c
Confidence 778874 456777772222222 222222222246677899999 699999876541110000 00011111 2
Q ss_pred ceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCC
Q 019290 181 GRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT 222 (343)
Q Consensus 181 ~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~ 222 (343)
..+...|......+.+..+.+.+.|++++|..+.||+++...
T Consensus 219 a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~ 260 (399)
T COG2133 219 AGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP 260 (399)
T ss_pred CcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence 234555555555555666788899999999877799998665
No 64
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.43 E-value=0.00054 Score=64.29 Aligned_cols=142 Identities=15% Similarity=0.118 Sum_probs=82.9
Q ss_pred eeEEEeCCCCeEEEEeCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeee
Q 019290 99 LGIKFNPVTCDLYIADAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSI 174 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~ 174 (343)
....++++++.|+++... ..|+.+|.++++.+.+.... ......++.+ || .++++...
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~-----~~~~~~~~sp-Dg~~l~~~~~~------------ 254 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP-----GMNGAPAFSP-DGSKLAVSLSK------------ 254 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC-----CCccceEECC-CCCEEEEEECC------------
Confidence 345567745566665433 24999999988766543211 1234567888 46 46665432
Q ss_pred eecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCce
Q 019290 175 ATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNI 252 (343)
Q Consensus 175 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i 252 (343)
.....||.++..++..+.+...........+++|++.++++.... ..||++++.+ ++.+.+..........
T Consensus 255 ---~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~----~~~~~l~~~~~~~~~~ 327 (417)
T TIGR02800 255 ---DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG----GEVRRLTFRGGYNASP 327 (417)
T ss_pred ---CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC----CCEEEeecCCCCccCe
Confidence 113469999988777666543332233557889999887765433 3688888765 2323332222223456
Q ss_pred eeCCCCCEEEEec
Q 019290 253 KSDSKGEFWIAMN 265 (343)
Q Consensus 253 ~~d~~G~lwi~~~ 265 (343)
.++++|+..+.+.
T Consensus 328 ~~spdg~~i~~~~ 340 (417)
T TIGR02800 328 SWSPDGDLIAFVH 340 (417)
T ss_pred EECCCCCEEEEEE
Confidence 7788886544443
No 65
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.31 E-value=0.0015 Score=60.36 Aligned_cols=186 Identities=15% Similarity=0.130 Sum_probs=117.4
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
+...|...++|..+|.+..+|.|..|+..++.-..+.. .....+..+|+.+. .+.++...+
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g------------------~~h~nqI~~~~~~~-~~~~~t~g~ 382 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG------------------KGHTNQIKGMAASE-SGELFTIGW 382 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccc------------------ccccceEEEEeecC-CCcEEEEec
Confidence 35688899999999999999999999987654333211 12234567888876 678888767
Q ss_pred CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290 116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV 195 (343)
Q Consensus 116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 195 (343)
.+.+.+++...+....-..... ...|-++++.+.++.+.++..+ .|..+.-.+ ....
T Consensus 383 Dd~l~~~~~~~~~~t~~~~~~l---g~QP~~lav~~d~~~avv~~~~-------------------~iv~l~~~~-~~~~ 439 (603)
T KOG0318|consen 383 DDTLRVISLKDNGYTKSEVVKL---GSQPKGLAVLSDGGTAVVACIS-------------------DIVLLQDQT-KVSS 439 (603)
T ss_pred CCeEEEEecccCcccccceeec---CCCceeEEEcCCCCEEEEEecC-------------------cEEEEecCC-ccee
Confidence 7778888876544332110111 1456789998832355554432 344444222 2222
Q ss_pred eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290 196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
+ .-...+.++|+++++....+.. .++.|++|.+.+... .+.....+..+.+..++.++||.++.++.-
T Consensus 440 ~-~~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~yla~~Da 507 (603)
T KOG0318|consen 440 I-PIGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGAYLAAGDA 507 (603)
T ss_pred e-ccccccceEEEcCCCCEEEEec-ccceEEEEEecCCcc-cceeeeecccCCceEEEECCCCcEEEEecc
Confidence 2 1224578999999998766654 567899999988543 222222223344667888999988877654
No 66
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.31 E-value=0.00063 Score=58.50 Aligned_cols=191 Identities=16% Similarity=0.193 Sum_probs=113.0
Q ss_pred eeEEEeCCCCeEEEEeCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290 99 LGIKFNPVTCDLYIADAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA 175 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~ 175 (343)
-|+.+.. ++.||-++..- .|.++|+++|++......... .+-.++++-. +++|.=+..
T Consensus 48 QGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~---~FgEGit~~~--d~l~qLTWk------------- 108 (264)
T PF05096_consen 48 QGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR---YFGEGITILG--DKLYQLTWK------------- 108 (264)
T ss_dssp EEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-----EEEEEEET--TEEEEEESS-------------
T ss_pred ccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc---ccceeEEEEC--CEEEEEEec-------------
Confidence 4888865 78999996533 499999999987654332221 3556777775 699986654
Q ss_pred ecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCC----Cc
Q 019290 176 TGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFP----DN 251 (343)
Q Consensus 176 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p----~~ 251 (343)
.+..+.||.++-+...-..-...-.|++ .|++.||+++ .+.+|+.+|+..=.....+.+ . ..+.| +.
T Consensus 109 ----~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~i~V-~-~~g~pv~~LNE 179 (264)
T PF05096_consen 109 ----EGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRTIQV-T-DNGRPVSNLNE 179 (264)
T ss_dssp ----SSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE--E-ETTEE---EEE
T ss_pred ----CCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEEEEE-E-ECCEECCCcEe
Confidence 5678999987654432222223345666 5677888876 578999998754211111111 1 22222 22
Q ss_pred eeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCC--------CCC---ccCCce
Q 019290 252 IKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGN--------EGN---TLNSVS 319 (343)
Q Consensus 252 i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~--------~~~---~~~~~~ 319 (343)
+..- +|.||.--+. ...|+++|| +|++...+... ... ..+...
T Consensus 180 LE~i-~G~IyANVW~------------------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLN 234 (264)
T PF05096_consen 180 LEYI-NGKIYANVWQ------------------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLN 234 (264)
T ss_dssp EEEE-TTEEEEEETT------------------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EE
T ss_pred EEEE-cCEEEEEeCC------------------------CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeE
Confidence 3332 6999999887 458899999 58887766310 010 012223
Q ss_pred eEEE--eCCEEEEecCCCCeEEEEc
Q 019290 320 EVQE--YGEYLYTGSSVQPYVVVIK 342 (343)
Q Consensus 320 ~~~~--~~g~l~i~~~~~~~i~~~~ 342 (343)
++.- ..+++|+++..=+++..++
T Consensus 235 GIAyd~~~~~l~vTGK~Wp~lyeV~ 259 (264)
T PF05096_consen 235 GIAYDPETDRLFVTGKLWPKLYEVK 259 (264)
T ss_dssp EEEEETTTTEEEEEETT-SEEEEEE
T ss_pred eEeEeCCCCEEEEEeCCCCceEEEE
Confidence 3333 3789999999888887764
No 67
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=0.0018 Score=56.04 Aligned_cols=218 Identities=14% Similarity=0.127 Sum_probs=127.1
Q ss_pred ccccccccCCCCCCCceEEEcCCCC-eeEEEe-cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeee
Q 019290 23 SKSYQQLQLPGVVGPESLAFDCNGE-GPYVGV-SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLG 100 (343)
Q Consensus 23 ~~~~~~~~~~~~~~p~~l~~d~~g~-~l~~~~-~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g 100 (343)
.++.+.+..+. ..++.+++-..-+ .++.++ .+..|..++..+.+..++.. .....+++
T Consensus 46 g~~~~ti~skk-yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~-------------------GH~~~V~s 105 (311)
T KOG1446|consen 46 GKQVKTINSKK-YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP-------------------GHKKRVNS 105 (311)
T ss_pred CceeeEeeccc-ccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC-------------------CCCceEEE
Confidence 44555555552 2466666665444 444333 35556666766555444421 22235788
Q ss_pred EEEeCCCCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290 101 IKFNPVTCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR 179 (343)
Q Consensus 101 i~~~~~~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~ 179 (343)
|...| .+..+++...+ .|+.+|.+..+-+.+... ....-.|+||. |-+++...+
T Consensus 106 L~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------~~~pi~AfDp~-GLifA~~~~----------------- 160 (311)
T KOG1446|consen 106 LSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNL------SGRPIAAFDPE-GLIFALANG----------------- 160 (311)
T ss_pred EEecC-CCCeEEecccCCeEEeeEecCCCCceEEec------CCCcceeECCC-CcEEEEecC-----------------
Confidence 99999 56666665555 589999885544433221 22345689994 877775543
Q ss_pred CceEEEEeCCC---CceEEee---cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCcee
Q 019290 180 SGRLLKYDPLK---KNVTVMY---NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIK 253 (343)
Q Consensus 180 ~~~v~~~d~~~---~~~~~~~---~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 253 (343)
...|-.||... |-...+. .....-+.+.|++||+.+.++. ..+.++.+|.-.......+.........|-+-+
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 33566666531 2222221 2234457899999999888775 467788877432111122222222223565667
Q ss_pred eCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCC
Q 019290 254 SDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGN 310 (343)
Q Consensus 254 ~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~ 310 (343)
+.|||++.+++.+ .+.|..++. .|+.+.....|
T Consensus 240 ftPds~Fvl~gs~------------------------dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 240 FTPDSKFVLSGSD------------------------DGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred ECCCCcEEEEecC------------------------CCcEEEEEcCCCcEeeEecCC
Confidence 8899998888776 456777775 57777776654
No 68
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.27 E-value=0.0017 Score=60.58 Aligned_cols=220 Identities=12% Similarity=0.036 Sum_probs=118.0
Q ss_pred CeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCC
Q 019290 47 EGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPN 125 (343)
Q Consensus 47 ~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~ 125 (343)
..+|+...++.|+.+|.++++.. .+.... + . ..........+. ++.++++.....++.+|.+
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~-----------~--~~~~~~~sP~v~--~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDV--P-----------S--LTLRGESAPATA--FGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCC--C-----------c--ccccCCCCCEEE--CCEEEEEcCCCEEEEEEcc
Confidence 34777788899999999887532 111000 0 0 000000111233 4678888544559999999
Q ss_pred CCeEEEcccccCC---CCc---c-CcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec
Q 019290 126 GGQAQQLASSAGG---IPF---R-FTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN 198 (343)
Q Consensus 126 ~~~~~~~~~~~~~---~~~---~-~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 198 (343)
+|+.......... ... . ....-++. ++.+|++.. .+.++.+|..+|+..-- .
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~--~~~vy~~~~------------------~g~l~ald~~tG~~~W~-~ 282 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVV--GGVVYALAY------------------NGNLVALDLRSGQIVWK-R 282 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEE--CCEEEEEEc------------------CCeEEEEECCCCCEEEe-e
Confidence 8875432211110 000 0 01122233 378888653 45799999988875321 1
Q ss_pred CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec--CC-CCCCceeeCCCCCEEEEeccCCCcccccc
Q 019290 199 GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE--MP-RFPDNIKSDSKGEFWIAMNSARGKIESNK 275 (343)
Q Consensus 199 ~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~-~~p~~i~~d~~G~lwi~~~~~~~~~~~~~ 275 (343)
....+...++ +++.+|+.. .++.++.++..+ ++. .... .. ......++ .+|.+|+++..
T Consensus 283 ~~~~~~~~~~--~~~~vy~~~-~~g~l~ald~~t----G~~-~W~~~~~~~~~~~sp~v-~~g~l~v~~~~--------- 344 (394)
T PRK11138 283 EYGSVNDFAV--DGGRIYLVD-QNDRVYALDTRG----GVE-LWSQSDLLHRLLTAPVL-YNGYLVVGDSE--------- 344 (394)
T ss_pred cCCCccCcEE--ECCEEEEEc-CCCeEEEEECCC----CcE-EEcccccCCCcccCCEE-ECCEEEEEeCC---------
Confidence 1222223333 356788876 468899999764 221 2211 11 11111222 36889998765
Q ss_pred ccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290 276 KTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVIK 342 (343)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~ 342 (343)
+.++++|+ +|+.+........ ...+.....+++||+++... .++.++
T Consensus 345 ----------------G~l~~ld~~tG~~~~~~~~~~~---~~~s~P~~~~~~l~v~t~~G-~l~~~~ 392 (394)
T PRK11138 345 ----------------GYLHWINREDGRFVAQQKVDSS---GFLSEPVVADDKLLIQARDG-TVYAIT 392 (394)
T ss_pred ----------------CEEEEEECCCCCEEEEEEcCCC---cceeCCEEECCEEEEEeCCc-eEEEEe
Confidence 47888997 6887766654322 12333344588999997643 455443
No 69
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.27 E-value=0.00025 Score=62.22 Aligned_cols=177 Identities=15% Similarity=0.119 Sum_probs=105.9
Q ss_pred cccccCC-CCCCCceEEEcCCCCeeEEEec-----CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCee
Q 019290 26 YQQLQLP-GVVGPESLAFDCNGEGPYVGVS-----DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPL 99 (343)
Q Consensus 26 ~~~~~~~-~~~~p~~l~~d~~g~~l~~~~~-----~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 99 (343)
.+.+..| +-..=-.-++++||+.||+..+ .|.|-.||... ...++. .+......|+
T Consensus 41 ~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~-----------------E~~s~GIGPH 102 (305)
T PF07433_consen 41 LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIG-----------------EFPSHGIGPH 102 (305)
T ss_pred eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEe-----------------EecCCCcChh
Confidence 4445445 2122225678999998887633 46788888873 333331 1123445689
Q ss_pred eEEEeCCCCeEEEEeCC------------------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeC
Q 019290 100 GIKFNPVTCDLYIADAY------------------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDS 161 (343)
Q Consensus 100 gi~~~~~~~~l~v~~~~------------------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~ 161 (343)
-+.+.+++.+|.|++.+ ..|..+|..+|++..-..........++..++++. +|.+|++..
T Consensus 103 el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q 181 (305)
T PF07433_consen 103 ELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQ 181 (305)
T ss_pred hEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEe
Confidence 99999844489998521 24666667777654332232233346788999999 699999875
Q ss_pred CcccccccceeeeeecCCCceEEEEeCCCCceEEeec------CC-CCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 162 SIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN------GL-SFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~------~~-~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
...- . ....--|..++.. ..++.+.. .+ ...-.|+++.+++.+.++...++++.+|+..+
T Consensus 182 ~qg~--------~--~~~~PLva~~~~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 182 YQGD--------P--GDAPPLVALHRRG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred cCCC--------C--CccCCeEEEEcCC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 4210 0 0011224445433 22332211 11 22457899999988889988999999998665
No 70
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.27 E-value=6e-06 Score=58.46 Aligned_cols=82 Identities=26% Similarity=0.396 Sum_probs=59.1
Q ss_pred ceeEEeCCCCeEEEEeCCcccccccceeee--eecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCC
Q 019290 145 NDLDIDPNTGIVYFTDSSIYFQRRQYFMSI--ATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT 222 (343)
Q Consensus 145 ~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~--~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~ 222 (343)
|+|+.-.. +++|+++.+..-.. ++..+ .-+...+.|..||+. +.+....++..||||+++++++.|||++...
T Consensus 1 NDIvavG~-~sFy~TNDhyf~~~--~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~ 75 (86)
T PF01731_consen 1 NDIVAVGP-DSFYVTNDHYFTDP--FLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLA 75 (86)
T ss_pred CCEEEECc-CcEEEECchhhCcH--HHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccC
Confidence 35554442 79999988753221 11111 112346778889874 6777788899999999999999999999999
Q ss_pred CeEEEEEcc
Q 019290 223 LKILRFWLQ 231 (343)
Q Consensus 223 ~~i~~~~~~ 231 (343)
+.|.+|..+
T Consensus 76 ~~I~vy~~~ 84 (86)
T PF01731_consen 76 HSIHVYKRH 84 (86)
T ss_pred CeEEEEEec
Confidence 999999864
No 71
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.22 E-value=0.00065 Score=61.95 Aligned_cols=153 Identities=14% Similarity=0.181 Sum_probs=87.6
Q ss_pred CCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCe----eeEEEeCCCCeEEEEeCCCeE
Q 019290 44 CNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRP----LGIKFNPVTCDLYIADAYFGL 119 (343)
Q Consensus 44 ~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~gi~~~~~~~~l~v~~~~~gi 119 (343)
.||+.+.+. +.|.||.|||.+.++..+....+... +...+....| ...++. .|.++...+....
T Consensus 276 sDGkrIvFq-~~GdIylydP~td~lekldI~lpl~r---------k~k~~k~~~pskyledfa~~--~Gd~ia~VSRGka 343 (668)
T COG4946 276 SDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDR---------KKKQPKFVNPSKYLEDFAVV--NGDYIALVSRGKA 343 (668)
T ss_pred CCCcEEEEe-cCCcEEEeCCCcCcceeeecCCcccc---------ccccccccCHHHhhhhhccC--CCcEEEEEecCcE
Confidence 455544443 56679999999877766643311100 0000111111 122233 2333322222236
Q ss_pred EEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecC
Q 019290 120 MVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNG 199 (343)
Q Consensus 120 ~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 199 (343)
+.+++..+-..++... .+ ..-..+..|++ .+.+++.. ...|-.||.++++++++..+
T Consensus 344 Fi~~~~~~~~iqv~~~-~~---VrY~r~~~~~e--~~vigt~d-----------------gD~l~iyd~~~~e~kr~e~~ 400 (668)
T COG4946 344 FIMRPWDGYSIQVGKK-GG---VRYRRIQVDPE--GDVIGTND-----------------GDKLGIYDKDGGEVKRIEKD 400 (668)
T ss_pred EEECCCCCeeEEcCCC-Cc---eEEEEEccCCc--ceEEeccC-----------------CceEEEEecCCceEEEeeCC
Confidence 7777765544433211 11 12234445552 44454432 23577888888999999999
Q ss_pred CCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 200 LSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 200 ~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
+.....+.++++|+.+.+++ ....||+++++.
T Consensus 401 lg~I~av~vs~dGK~~vvaN-dr~el~vididn 432 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDN 432 (668)
T ss_pred ccceEEEEEcCCCcEEEEEc-CceEEEEEEecC
Confidence 99999999999999887775 478999999986
No 72
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.21 E-value=0.0011 Score=63.05 Aligned_cols=153 Identities=18% Similarity=0.246 Sum_probs=104.9
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCC-C-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANS-G-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA 113 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~ 113 (343)
...++++.++|..+..+..+..|..||.... . +..+. .....+..++|++ ++++.+.
T Consensus 205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~--------------------gH~~~v~~~~f~p-~g~~i~S 263 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK--------------------GHSTYVTSVAFSP-DGNLLVS 263 (456)
T ss_pred ceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec--------------------CCCCceEEEEecC-CCCEEEE
Confidence 4779999999997888899999999998332 2 22221 2233468899999 4555554
Q ss_pred eCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290 114 DAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN 192 (343)
Q Consensus 114 ~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 192 (343)
...++ ++.+|.++++......... ..++.+++.+ +|++.++... .+.|..||..++.
T Consensus 264 gs~D~tvriWd~~~~~~~~~l~~hs----~~is~~~f~~-d~~~l~s~s~-----------------d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 264 GSDDGTVRIWDVRTGECVRKLKGHS----DGISGLAFSP-DGNLLVSASY-----------------DGTIRVWDLETGS 321 (456)
T ss_pred ecCCCcEEEEeccCCeEEEeeeccC----CceEEEEECC-CCCEEEEcCC-----------------CccEEEEECCCCc
Confidence 44555 9999999877655433322 3578899999 5877775543 5678889998877
Q ss_pred eE--EeecCCCC---cceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 193 VT--VMYNGLSF---PNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 193 ~~--~~~~~~~~---~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.. ........ ...+++++++.+++.. ..++.+..|++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~-~~d~~~~~w~l~~ 365 (456)
T KOG0266|consen 322 KLCLKLLSGAENSAPVTSVQFSPNGKYLLSA-SLDRTLKLWDLRS 365 (456)
T ss_pred eeeeecccCCCCCCceeEEEECCCCcEEEEe-cCCCeEEEEEccC
Confidence 32 22223233 3778899999877665 4567888888874
No 73
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=0.0027 Score=59.87 Aligned_cols=183 Identities=14% Similarity=0.117 Sum_probs=99.2
Q ss_pred ceEEEcCCCCe---eEEEecC--CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290 38 ESLAFDCNGEG---PYVGVSD--GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI 112 (343)
Q Consensus 38 ~~l~~d~~g~~---l~~~~~~--g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v 112 (343)
.+-.+.|||+. +|++..+ .+||..+..+++...+... .+......+++++..|.+
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~--------------------~g~~~~p~wSPDG~~Laf 247 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL--------------------QGNQLMPTFSPRKKLLAF 247 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC--------------------CCCccceEECCCCCEEEE
Confidence 35578999863 3455443 4799999888766655321 111234567774446665
Q ss_pred EeCCC---eEEE--EeCCC---CeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceE
Q 019290 113 ADAYF---GLMV--VGPNG---GQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRL 183 (343)
Q Consensus 113 ~~~~~---gi~~--~d~~~---~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v 183 (343)
+.... .++. ++.++ ++.+.+..... ......++.| ||+ |+++... .+...|
T Consensus 248 ~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~----~~~~~p~wSP-DG~~Laf~s~~---------------~g~~~l 307 (428)
T PRK01029 248 ISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF----GTQGNPSFSP-DGTRLVFVSNK---------------DGRPRI 307 (428)
T ss_pred EECCCCCcceeEEEeecccCCCCcceEeecCCC----CCcCCeEECC-CCCEEEEEECC---------------CCCceE
Confidence 53222 2444 45543 23333321110 1223567888 565 5553321 112358
Q ss_pred EEEeCC--CCceEEeecCCCCcceeEEecCCCEEEEEEcC--CCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC
Q 019290 184 LKYDPL--KKNVTVMYNGLSFPNGVALSNNNSFLLLAESA--TLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE 259 (343)
Q Consensus 184 ~~~d~~--~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~ 259 (343)
|+++.+ ++..+.+..........+++|||+.++++... ...|+++++++ ++.+.+.............+||+
T Consensus 308 y~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~----g~~~~Lt~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 308 YIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT----GRDYQLTTSPENKESPSWAIDSL 383 (428)
T ss_pred EEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC----CCeEEccCCCCCccceEECCCCC
Confidence 888654 23344443332334567899999988776543 34799999876 33344433222345567788886
Q ss_pred -EEEEe
Q 019290 260 -FWIAM 264 (343)
Q Consensus 260 -lwi~~ 264 (343)
|++..
T Consensus 384 ~L~f~~ 389 (428)
T PRK01029 384 HLVYSA 389 (428)
T ss_pred EEEEEE
Confidence 44443
No 74
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.17 E-value=0.00038 Score=63.03 Aligned_cols=171 Identities=11% Similarity=0.087 Sum_probs=83.8
Q ss_pred EEEcCCCCeeEEEec---CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290 40 LAFDCNGEGPYVGVS---DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY 116 (343)
Q Consensus 40 l~~d~~g~~l~~~~~---~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~ 116 (343)
=++.++|+.+.+... ..++|.+|..++++.++...+ .....|..+.+.++.+|.....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~-------------------g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP-------------------GDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--------------------B-TTT-EE-TTSSEEEEEETT
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC-------------------CCCccceEEecCCCeEEEEECC
Confidence 345678875554332 457999999999888875311 1112355666656676544356
Q ss_pred CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcc--cc-c--ccceeeeeecCCCceEEEEeCCCC
Q 019290 117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIY--FQ-R--RQYFMSIATGDRSGRLLKYDPLKK 191 (343)
Q Consensus 117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~--~~-~--~~~~~~~~~~~~~~~v~~~d~~~~ 191 (343)
..|+++|+++.+.+.+......- ...-...++. |++.+++..... +. . +++.....+..+..+|+++|..+|
T Consensus 102 ~~l~~vdL~T~e~~~vy~~p~~~--~g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG 178 (386)
T PF14583_consen 102 RSLRRVDLDTLEERVVYEVPDDW--KGYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG 178 (386)
T ss_dssp TEEEEEETTT--EEEEEE--TTE--EEEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred CeEEEEECCcCcEEEEEECCccc--ccccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence 78999999998877665443321 1111223355 577766543211 11 0 122233445555678999999999
Q ss_pred ceEEeecCCCCcceeEEecCCCE-EEEEEcC-----CCeEEEEEccC
Q 019290 192 NVTVMYNGLSFPNGVALSNNNSF-LLLAESA-----TLKILRFWLQG 232 (343)
Q Consensus 192 ~~~~~~~~~~~~~~i~~~~d~~~-lyv~~~~-----~~~i~~~~~~~ 232 (343)
+.+.+...-....=+.++|.... +.++... ..+||.++.++
T Consensus 179 ~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg 225 (386)
T PF14583_consen 179 ERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG 225 (386)
T ss_dssp -EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred ceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC
Confidence 98877654443344445553322 2222222 46899999877
No 75
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.16 E-value=0.006 Score=57.27 Aligned_cols=136 Identities=14% Similarity=0.099 Sum_probs=81.0
Q ss_pred eEEEeCCCCe-EEEEeCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeee
Q 019290 100 GIKFNPVTCD-LYIADAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSI 174 (343)
Q Consensus 100 gi~~~~~~~~-l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~ 174 (343)
...++++++. +++.... ..|+.+|+.+++.+.+... .+ ......+.| || .+.++...
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-~g----~~~~~~~SP-DG~~la~~~~~------------ 253 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-QG----MLVVSDVSK-DGSKLLLTMAP------------ 253 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-CC----cEEeeEECC-CCCEEEEEEcc------------
Confidence 4556774443 6665443 2399999999988777532 11 112345677 45 56665432
Q ss_pred eecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCce
Q 019290 175 ATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNI 252 (343)
Q Consensus 175 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i 252 (343)
.+...||.+|.++++.+.+...........++|||+.++++.... ..|+++++++ ++.+.+... +. ...
T Consensus 254 ---~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~----g~~~rlt~~-g~-~~~ 324 (419)
T PRK04043 254 ---KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS----GSVEQVVFH-GK-NNS 324 (419)
T ss_pred ---CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC----CCeEeCccC-CC-cCc
Confidence 114579999988888776653322233456899999998876443 3799999876 333333221 11 124
Q ss_pred eeCCCCCEEE
Q 019290 253 KSDSKGEFWI 262 (343)
Q Consensus 253 ~~d~~G~lwi 262 (343)
..++||+..+
T Consensus 325 ~~SPDG~~Ia 334 (419)
T PRK04043 325 SVSTYKNYIV 334 (419)
T ss_pred eECCCCCEEE
Confidence 6788886433
No 76
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.14 E-value=0.002 Score=59.60 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=17.1
Q ss_pred CCeeEEEecCCEEEEEEcCCCCe
Q 019290 46 GEGPYVGVSDGRILKWKAANSGW 68 (343)
Q Consensus 46 g~~l~~~~~~g~i~~~d~~~~~~ 68 (343)
++.+|++..++.++.+|..+++.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~ 87 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKR 87 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcE
Confidence 34588888888899988776653
No 77
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.14 E-value=0.0035 Score=53.52 Aligned_cols=190 Identities=9% Similarity=0.121 Sum_probs=116.2
Q ss_pred eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290 98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
..++.+.+ +++..++...++ ++.+|+.+|+......... .-+.++++++ |++-.++.+.
T Consensus 66 v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~----~dVlsva~s~-dn~qivSGSr-------------- 125 (315)
T KOG0279|consen 66 VSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVGHT----KDVLSVAFST-DNRQIVSGSR-------------- 125 (315)
T ss_pred ecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEecC----CceEEEEecC-CCceeecCCC--------------
Confidence 45677787 666666645566 8889999986555433221 3467889999 5888775543
Q ss_pred cCCCceEEEEeCCCCceEEeecC--CCCcceeEEecCC-CEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCcee
Q 019290 177 GDRSGRLLKYDPLKKNVTVMYNG--LSFPNGVALSNNN-SFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIK 253 (343)
Q Consensus 177 ~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~i~~~~d~-~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 253 (343)
...+-.++..+.-.-.+..+ -.-.+.++|+|.. +-.+++...++.+.+|++++-.. ...+....+...-++
T Consensus 126 ---DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l---~~~~~gh~~~v~t~~ 199 (315)
T KOG0279|consen 126 ---DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL---RTTFIGHSGYVNTVT 199 (315)
T ss_pred ---cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch---hhccccccccEEEEE
Confidence 33455666553333233332 2336778899886 44555666788999999876322 011112233455678
Q ss_pred eCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEec
Q 019290 254 SDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGS 332 (343)
Q Consensus 254 ~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~ 332 (343)
+++||.+.+.... .+.++-.|- .++-++.+.. ...+..+....++.|+.-
T Consensus 200 vSpDGslcasGgk------------------------dg~~~LwdL~~~k~lysl~a-----~~~v~sl~fspnrywL~~ 250 (315)
T KOG0279|consen 200 VSPDGSLCASGGK------------------------DGEAMLWDLNEGKNLYSLEA-----FDIVNSLCFSPNRYWLCA 250 (315)
T ss_pred ECCCCCEEecCCC------------------------CceEEEEEccCCceeEeccC-----CCeEeeEEecCCceeEee
Confidence 8999998877544 335555665 4555554432 345667777788888776
Q ss_pred CCCCeEEEEc
Q 019290 333 SVQPYVVVIK 342 (343)
Q Consensus 333 ~~~~~i~~~~ 342 (343)
.-..+|-..+
T Consensus 251 at~~sIkIwd 260 (315)
T KOG0279|consen 251 ATATSIKIWD 260 (315)
T ss_pred ccCCceEEEe
Confidence 6666665443
No 78
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.14 E-value=0.0017 Score=60.07 Aligned_cols=173 Identities=16% Similarity=0.082 Sum_probs=93.0
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeEEEcccccC--CC-Cc----cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290 107 TCDLYIADAYFGLMVVGPNGGQAQQLASSAG--GI-PF----RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR 179 (343)
Q Consensus 107 ~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~--~~-~~----~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~ 179 (343)
++.++++.....++.+|+++|+...-..... +. .. .......++ ++.+|++..
T Consensus 190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~~~vy~~~~------------------ 249 (377)
T TIGR03300 190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--GGQVYAVSY------------------ 249 (377)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--CCEEEEEEc------------------
Confidence 3567777544458889988887543211110 00 00 001122233 368888553
Q ss_pred CceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCC-CCCceeeCCCC
Q 019290 180 SGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPR-FPDNIKSDSKG 258 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~G 258 (343)
.+.++.+|.++|+..--.. .......++ +++.+|+.. .++.|+.++......+-+.. ...+ .....++ .++
T Consensus 250 ~g~l~a~d~~tG~~~W~~~-~~~~~~p~~--~~~~vyv~~-~~G~l~~~d~~tG~~~W~~~---~~~~~~~ssp~i-~g~ 321 (377)
T TIGR03300 250 QGRVAALDLRSGRVLWKRD-ASSYQGPAV--DDNRLYVTD-ADGVVVALDRRSGSELWKND---ELKYRQLTAPAV-VGG 321 (377)
T ss_pred CCEEEEEECCCCcEEEeec-cCCccCceE--eCCEEEEEC-CCCeEEEEECCCCcEEEccc---cccCCccccCEE-ECC
Confidence 4579999998887543221 122223333 356788875 57899999976421101110 1111 0111222 256
Q ss_pred CEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCC
Q 019290 259 EFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQ 335 (343)
Q Consensus 259 ~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~ 335 (343)
.+++++.. +.|+++|+ +|+.+..+..+.. ...+.....+++||+++.+.
T Consensus 322 ~l~~~~~~-------------------------G~l~~~d~~tG~~~~~~~~~~~---~~~~sp~~~~~~l~v~~~dG 371 (377)
T TIGR03300 322 YLVVGDFE-------------------------GYLHWLSREDGSFVARLKTDGS---GIASPPVVVGDGLLVQTRDG 371 (377)
T ss_pred EEEEEeCC-------------------------CEEEEEECCCCCEEEEEEcCCC---ccccCCEEECCEEEEEeCCc
Confidence 78888654 47889998 5888777664332 12333344578899888753
No 79
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.13 E-value=0.0069 Score=61.84 Aligned_cols=161 Identities=12% Similarity=0.016 Sum_probs=92.2
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe-EEEEeC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD-LYIADA 115 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~-l~v~~~ 115 (343)
..+++++++|+.+.++..++.|..|+..+....... ...+. .. ........++++++..+. |..+ .
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~--~~~~~---------~~-~~~~~~v~~l~~~~~~~~~las~-~ 552 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD--IHYPV---------VE-LASRSKLSGICWNSYIKSQVASS-N 552 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc--cccce---------EE-ecccCceeeEEeccCCCCEEEEE-e
Confidence 568999999997778888999999986431100000 00000 00 001123456777653344 4444 3
Q ss_pred CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290 116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT 194 (343)
Q Consensus 116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 194 (343)
.+| |..+|.++++........ ...+.++++++.++.++++... .+.|..||..++...
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~~H----~~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMKEH----EKRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSI 611 (793)
T ss_pred CCCeEEEEECCCCeEEEEecCC----CCCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEE
Confidence 445 888898876543322211 1357889998634666665543 456888887665543
Q ss_pred EeecCCCCcceeEEec-CCCEEEEEEcCCCeEEEEEccC
Q 019290 195 VMYNGLSFPNGVALSN-NNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 195 ~~~~~~~~~~~i~~~~-d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
...........+.+.+ ++. .+++...++.|..|++..
T Consensus 612 ~~~~~~~~v~~v~~~~~~g~-~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 612 GTIKTKANICCVQFPSESGR-SLAFGSADHKVYYYDLRN 649 (793)
T ss_pred EEEecCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence 2222223345666644 455 455666789999999864
No 80
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.13 E-value=0.0025 Score=54.72 Aligned_cols=174 Identities=15% Similarity=0.155 Sum_probs=94.2
Q ss_pred EEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeE
Q 019290 41 AFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGL 119 (343)
Q Consensus 41 ~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi 119 (343)
....++. +|+...++.|+.+|..+++.. .+.. . .....+ .... ++.+|++.....+
T Consensus 32 ~~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~-~-----------------~~~~~~--~~~~--~~~v~v~~~~~~l 88 (238)
T PF13360_consen 32 AVPDGGR-VYVASGDGNLYALDAKTGKVLWRFDL-P-----------------GPISGA--PVVD--GGRVYVGTSDGSL 88 (238)
T ss_dssp EEEETTE-EEEEETTSEEEEEETTTSEEEEEEEC-S-----------------SCGGSG--EEEE--TTEEEEEETTSEE
T ss_pred EEEeCCE-EEEEcCCCEEEEEECCCCCEEEEeec-c-----------------ccccce--eeec--ccccccccceeee
Confidence 3434445 888889999999999776532 2211 0 010011 2233 6889998655579
Q ss_pred EEEeCCCCeEEEcc-ccc-CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290 120 MVVGPNGGQAQQLA-SSA-GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY 197 (343)
Q Consensus 120 ~~~d~~~~~~~~~~-~~~-~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 197 (343)
+.+|.++|+...-. ... +..........+++. +.++++.. .+.|+.+|+++|+..--.
T Consensus 89 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 89 YALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG--DRLYVGTS------------------SGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET--TEEEEEET------------------CSEEEEEETTTTEEEEEE
T ss_pred EecccCCcceeeeeccccccccccccccCceEec--CEEEEEec------------------cCcEEEEecCCCcEEEEe
Confidence 99999999876542 222 111122233445553 68888664 357999999888764222
Q ss_pred cC-C-CC---------cceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEe
Q 019290 198 NG-L-SF---------PNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM 264 (343)
Q Consensus 198 ~~-~-~~---------~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~ 264 (343)
.. . .. ..+-.+..++ .+|++.. .+.+..++..+ ++.. +......+.....-.++.+|+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~g~~~~~d~~t----g~~~-w~~~~~~~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSG-DGRVVAVDLAT----GEKL-WSKPISGIYSLPSVDGGTLYVTS 219 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECCTT-EEEEECC-TSSEEEEETTT----TEEE-EEECSS-ECECEECCCTEEEEEE
T ss_pred ecCCCCCCcceeeecccccceEEECC-EEEEEcC-CCeEEEEECCC----CCEE-EEecCCCccCCceeeCCEEEEEe
Confidence 11 1 10 1122232334 7888754 44566667665 3322 32122213333344567888888
No 81
>PTZ00421 coronin; Provisional
Probab=98.12 E-value=0.0074 Score=57.73 Aligned_cols=162 Identities=15% Similarity=0.190 Sum_probs=95.4
Q ss_pred CceEEEcC-CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 37 PESLAFDC-NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 37 p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
..++++++ +++.+.++..++.|..||..+.....-.... . .........+..+.+++..++++++..
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~------l------~~L~gH~~~V~~l~f~P~~~~iLaSgs 145 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDP------I------VHLQGHTKKVGIVSFHPSAMNVLASAG 145 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcc------e------EEecCCCCcEEEEEeCcCCCCEEEEEe
Confidence 56899999 7887888889999999987653211000000 0 000112234567889884444444433
Q ss_pred CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290 116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT 194 (343)
Q Consensus 116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 194 (343)
.++ |..+|.++++........ ...+.++++.+ +|.+.++... .+.|..||+.+++..
T Consensus 146 ~DgtVrIWDl~tg~~~~~l~~h----~~~V~sla~sp-dG~lLatgs~-----------------Dg~IrIwD~rsg~~v 203 (493)
T PTZ00421 146 ADMVVNVWDVERGKAVEVIKCH----SDQITSLEWNL-DGSLLCTTSK-----------------DKKLNIIDPRDGTIV 203 (493)
T ss_pred CCCEEEEEECCCCeEEEEEcCC----CCceEEEEEEC-CCCEEEEecC-----------------CCEEEEEECCCCcEE
Confidence 444 889999887644322211 13578899999 5887775543 467888898766643
Q ss_pred E-eecCC-CCcceeEEecCCCEEEEEE---cCCCeEEEEEccC
Q 019290 195 V-MYNGL-SFPNGVALSNNNSFLLLAE---SATLKILRFWLQG 232 (343)
Q Consensus 195 ~-~~~~~-~~~~~i~~~~d~~~lyv~~---~~~~~i~~~~~~~ 232 (343)
. +.... .......+.+++..+..+. ..++.|..||+..
T Consensus 204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 204 SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 2 22111 1123455666666555443 2357899999753
No 82
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.0039 Score=58.82 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=69.9
Q ss_pred eeeEEEeCCCCeEEEEeCCC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceee
Q 019290 98 PLGIKFNPVTCDLYIADAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMS 173 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~ 173 (343)
.....+++++..|.++.... .|+.+|.++++.+.+.... + .....++.| ||+ |.++...
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g----~~~~~~wSP-DG~~La~~~~~----------- 268 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-G----HNGAPAFSP-DGSRLAFASSK----------- 268 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-C----ccCceeECC-CCCEEEEEEec-----------
Confidence 34567888555565553322 4999999888765553221 1 123578888 575 5554321
Q ss_pred eeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCC--eEEEEEccC
Q 019290 174 IATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATL--KILRFWLQG 232 (343)
Q Consensus 174 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~--~i~~~~~~~ 232 (343)
.+.-.||.+|.++++.+.+..........++++||+.++++....+ .||.++..+
T Consensus 269 ----~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 269 ----DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG 325 (429)
T ss_pred ----CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 1123589999887777766544444567889999998887754433 566666544
No 83
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.10 E-value=0.00053 Score=64.13 Aligned_cols=107 Identities=20% Similarity=0.343 Sum_probs=68.7
Q ss_pred cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee------c--CCCCcceeEEecCC-
Q 019290 142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY------N--GLSFPNGVALSNNN- 212 (343)
Q Consensus 142 ~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~------~--~~~~~~~i~~~~d~- 212 (343)
..|.+|++.+ ||++||++.. .++|+++++.++..+.+. . .....-+++++|+-
T Consensus 30 ~~Pw~maflP-DG~llVtER~-----------------~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~ 91 (454)
T TIGR03606 30 NKPWALLWGP-DNQLWVTERA-----------------TGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFM 91 (454)
T ss_pred CCceEEEEcC-CCeEEEEEec-----------------CCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCcc
Confidence 5688999999 6999998753 468888887654432211 1 23456789998763
Q ss_pred -----CEEEEEEcC---------CCeEEEEEccCc-cccccce-eeecCCC----CCCceeeCCCCCEEEEecc
Q 019290 213 -----SFLLLAESA---------TLKILRFWLQGE-RTTYTPQ-LFAEMPR----FPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 213 -----~~lyv~~~~---------~~~i~~~~~~~~-~~~~~~~-~~~~~~~----~p~~i~~d~~G~lwi~~~~ 266 (343)
+.+|++.+. ..+|.|+.++.. ..+...+ ++...+. .-..|++++||.|||+...
T Consensus 92 ~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 92 QEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred ccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 468887422 468999987632 1112223 3322221 1234889999999999876
No 84
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.09 E-value=0.0031 Score=58.76 Aligned_cols=176 Identities=11% Similarity=0.051 Sum_probs=89.2
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeEEEcccccCCC-CccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290 107 TCDLYIADAYFGLMVVGPNGGQAQQLASSAGGI-PFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK 185 (343)
Q Consensus 107 ~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 185 (343)
++.+|+++....++.+|.++|+...-....... .......-++.. +.++++.. .+.++.
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~--~~v~~~~~------------------~g~v~a 219 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF--GGAIVGGD------------------NGRVSA 219 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC--CEEEEEcC------------------CCEEEE
Confidence 578898854445999999999876543221100 000111223333 57777543 456777
Q ss_pred EeCCCCceEEeecCCCCc-------------ceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCc
Q 019290 186 YDPLKKNVTVMYNGLSFP-------------NGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDN 251 (343)
Q Consensus 186 ~d~~~~~~~~~~~~~~~~-------------~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~ 251 (343)
+|.++|+..--.. ...+ ..-.+ .++.+|+... .+.++.++... ++. .+.. ... +..
T Consensus 220 ~d~~~G~~~W~~~-~~~~~~~~~~~~~~~~~~sP~v--~~~~vy~~~~-~g~l~ald~~t----G~~-~W~~~~~~-~~~ 289 (394)
T PRK11138 220 VLMEQGQLIWQQR-ISQPTGATEIDRLVDVDTTPVV--VGGVVYALAY-NGNLVALDLRS----GQI-VWKREYGS-VND 289 (394)
T ss_pred EEccCChhhheec-cccCCCccchhcccccCCCcEE--ECCEEEEEEc-CCeEEEEECCC----CCE-EEeecCCC-ccC
Confidence 8877765421110 0000 11112 2456888764 67899999764 221 2221 111 223
Q ss_pred eeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEE
Q 019290 252 IKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYT 330 (343)
Q Consensus 252 i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i 330 (343)
++. .+|++|+++.. +.++++|+ +|+.+=......+ ...+.....+|+||+
T Consensus 290 ~~~-~~~~vy~~~~~-------------------------g~l~ald~~tG~~~W~~~~~~~---~~~~sp~v~~g~l~v 340 (394)
T PRK11138 290 FAV-DGGRIYLVDQN-------------------------DRVYALDTRGGVELWSQSDLLH---RLLTAPVLYNGYLVV 340 (394)
T ss_pred cEE-ECCEEEEEcCC-------------------------CeEEEEECCCCcEEEcccccCC---CcccCCEEECCEEEE
Confidence 333 35789988754 47888987 4655322221111 112223334677777
Q ss_pred ecCCCCeEEEEc
Q 019290 331 GSSVQPYVVVIK 342 (343)
Q Consensus 331 ~~~~~~~i~~~~ 342 (343)
++... .+..++
T Consensus 341 ~~~~G-~l~~ld 351 (394)
T PRK11138 341 GDSEG-YLHWIN 351 (394)
T ss_pred EeCCC-EEEEEE
Confidence 65543 344443
No 85
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.09 E-value=0.00019 Score=64.17 Aligned_cols=101 Identities=17% Similarity=0.294 Sum_probs=70.7
Q ss_pred cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec-----CCCCcceeEEecCCCEEE
Q 019290 142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN-----GLSFPNGVALSNNNSFLL 216 (343)
Q Consensus 142 ~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-----~~~~~~~i~~~~d~~~ly 216 (343)
..|-+|+++.+.|++||+|.. -+|+.++++++..+.+.. .+...|++.+++ ++.+|
T Consensus 115 GRPLGl~f~~~ggdL~VaDAY------------------lGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vy 175 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAY------------------LGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVY 175 (376)
T ss_pred CCcceEEeccCCCeEEEEecc------------------eeeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEE
Confidence 568899999864599998864 469999998776544332 235578999998 45689
Q ss_pred EEEcC-----------------CCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEec
Q 019290 217 LAESA-----------------TLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMN 265 (343)
Q Consensus 217 v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~ 265 (343)
++++. .|++.+||..+ ...+++.+.-.+|+|+++++|+.+.+.+.
T Consensus 176 FTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~t----K~~~VLld~L~F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 176 FTDSSSKYDRRDFVFAALEGDPTGRLFRYDPST----KVTKVLLDGLYFPNGLALSPDGSFVLVAE 237 (376)
T ss_pred EeccccccchhheEEeeecCCCccceEEecCcc----cchhhhhhcccccccccCCCCCCEEEEEe
Confidence 98764 56777777544 33344444334699999999986655443
No 86
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.08 E-value=0.0051 Score=52.56 Aligned_cols=184 Identities=12% Similarity=0.161 Sum_probs=113.8
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
..+++..+||+..+.+..++.+..+|..+++.+ .|. .......++++++++..+.-+..
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~--------------------GH~~dVlsva~s~dn~qivSGSr 125 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV--------------------GHTKDVLSVAFSTDNRQIVSGSR 125 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCcEEEEEE--------------------ecCCceEEEEecCCCceeecCCC
Confidence 668889999997778899999999999886433 332 11223578899983334444433
Q ss_pred CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290 116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV 195 (343)
Q Consensus 116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 195 (343)
..-|..+|..++..-.+....+ -..++.+.+.|+..+.++...+ ....|-.+|.++-+.+.
T Consensus 126 DkTiklwnt~g~ck~t~~~~~~---~~WVscvrfsP~~~~p~Ivs~s----------------~DktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 126 DKTIKLWNTLGVCKYTIHEDSH---REWVSCVRFSPNESNPIIVSAS----------------WDKTVKVWNLRNCQLRT 186 (315)
T ss_pred cceeeeeeecccEEEEEecCCC---cCcEEEEEEcCCCCCcEEEEcc----------------CCceEEEEccCCcchhh
Confidence 3448888877554333322211 3678899999953344443222 13446667776544432
Q ss_pred -eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee-cCCCCCCceeeCCCCCEEEEecc
Q 019290 196 -MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA-EMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 196 -~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
+...-...+.++++|||. +..+.-.++.++.||++. ++. .+. +.......+++.| .++|++...
T Consensus 187 ~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~----~k~-lysl~a~~~v~sl~fsp-nrywL~~at 252 (315)
T KOG0279|consen 187 TFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNE----GKN-LYSLEAFDIVNSLCFSP-NRYWLCAAT 252 (315)
T ss_pred ccccccccEEEEEECCCCC-EEecCCCCceEEEEEccC----Cce-eEeccCCCeEeeEEecC-CceeEeecc
Confidence 223334468899999997 555666688999999875 221 221 1222345678887 458888665
No 87
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.08 E-value=0.0037 Score=56.90 Aligned_cols=213 Identities=13% Similarity=0.108 Sum_probs=117.6
Q ss_pred cCCCCCCCceEEEcCCCCeeEEEecCCE--EEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC
Q 019290 30 QLPGVVGPESLAFDCNGEGPYVGVSDGR--ILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT 107 (343)
Q Consensus 30 ~~~~~~~p~~l~~d~~g~~l~~~~~~g~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~ 107 (343)
..|-...-.++-+-|.-.++.++..++. ||.+|..+.... .+.. -.........+.+ +
T Consensus 209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~l---qS~~----------------l~~fPi~~a~f~p-~ 268 (514)
T KOG2055|consen 209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKL---QSIH----------------LEKFPIQKAEFAP-N 268 (514)
T ss_pred CCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhh---eeee----------------eccCccceeeecC-C
Confidence 3443335678889998887777766764 455554432211 0000 0011123455666 5
Q ss_pred Ce-EEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290 108 CD-LYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK 185 (343)
Q Consensus 108 ~~-l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 185 (343)
|. ..++..... +|.||.++.++..+... .+.+...+..+.+.+ ++.+.+.... .|-|+.
T Consensus 269 G~~~i~~s~rrky~ysyDle~ak~~k~~~~-~g~e~~~~e~FeVSh-d~~fia~~G~-----------------~G~I~l 329 (514)
T KOG2055|consen 269 GHSVIFTSGRRKYLYSYDLETAKVTKLKPP-YGVEEKSMERFEVSH-DSNFIAIAGN-----------------NGHIHL 329 (514)
T ss_pred CceEEEecccceEEEEeeccccccccccCC-CCcccchhheeEecC-CCCeEEEccc-----------------CceEEe
Confidence 54 444423334 88999999998877433 222334567778888 4664442222 466887
Q ss_pred EeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCC-CCCceeeCCCCCEEEEe
Q 019290 186 YDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPR-FPDNIKSDSKGEFWIAM 264 (343)
Q Consensus 186 ~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~G~lwi~~ 264 (343)
+...+++...-..--....+++|+.|++.||++. ..+.||+|++.... ....+....+ .-..+|...+|. |+++
T Consensus 330 LhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~~---~~~rf~D~G~v~gts~~~S~ng~-ylA~ 404 (514)
T KOG2055|consen 330 LHAKTKELITSFKIEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQNS---CLHRFVDDGSVHGTSLCISLNGS-YLAT 404 (514)
T ss_pred ehhhhhhhhheeeeccEEeeEEEecCCcEEEEEc-CCceEEEEecCCcc---eEEEEeecCccceeeeeecCCCc-eEEe
Confidence 7776666432111112357888999999888875 46799999987532 1223332111 223467777887 5554
Q ss_pred cc-CCCccccccccccccccCCC
Q 019290 265 NS-ARGKIESNKKTAFCEETAKP 286 (343)
Q Consensus 265 ~~-~~~~~~~~~~~~~~~~~~~~ 286 (343)
.. .+...+-..+..+....|.|
T Consensus 405 GS~~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 405 GSDSGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred ccCcceEEEeccchhhccCCCCc
Confidence 43 22222222244455555555
No 88
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.06 E-value=0.0006 Score=58.82 Aligned_cols=176 Identities=16% Similarity=0.223 Sum_probs=100.4
Q ss_pred ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEE--cCCCCeE--EeeecCCCccccccCCCCCcccCCCcCCe
Q 019290 23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWK--AANSGWT--EFATTAPHRAREICDGSTNTTLEPLCGRP 98 (343)
Q Consensus 23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 98 (343)
-..+++++++++..||.|.+-.+|.+..+...+.+++.+. +++.... .+.........++ ..=
T Consensus 117 GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N-------------~Gf 183 (316)
T COG3204 117 GDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKN-------------KGF 183 (316)
T ss_pred CceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCC-------------cCc
Confidence 4567899999999999999999998555667777877764 4432111 1111111110011 123
Q ss_pred eeEEEeCCCCeEEEEeCC--CeEEEEeCCCCeEEE-cccccCCC---CccCcceeEEeCCCCeEEE-EeCCcccccccce
Q 019290 99 LGIKFNPVTCDLYIADAY--FGLMVVGPNGGQAQQ-LASSAGGI---PFRFTNDLDIDPNTGIVYF-TDSSIYFQRRQYF 171 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~~~--~gi~~~d~~~~~~~~-~~~~~~~~---~~~~~~~i~~d~~dg~l~v-~~~~~~~~~~~~~ 171 (343)
.|++.+++++++|++... -+|+.++........ ........ -..-+.++.+++..|.++| ++.
T Consensus 184 EGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~E---------- 253 (316)
T COG3204 184 EGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDE---------- 253 (316)
T ss_pred eeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecC----------
Confidence 589999988999999643 357777632211111 11111100 1233566777754455554 332
Q ss_pred eeeeecCCCceEEEEeCCCCceEEe---------ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290 172 MSIATGDRSGRLLKYDPLKKNVTVM---------YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ 231 (343)
Q Consensus 172 ~~~~~~~~~~~v~~~d~~~~~~~~~---------~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~ 231 (343)
+..|..+|..+.....+ ..+...+.|++++.+|. ||+++ ..+..|+|..+
T Consensus 254 --------Sr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvS-EPnlfy~F~~~ 312 (316)
T COG3204 254 --------SRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVS-EPNLFYRFTPQ 312 (316)
T ss_pred --------CceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEe-cCCcceecccC
Confidence 34566677653322221 12344589999997775 78774 46788888754
No 89
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.0046 Score=58.83 Aligned_cols=189 Identities=15% Similarity=0.204 Sum_probs=113.0
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
+..++.+.++|+.+..+..++.+..++..+... ... .........+.++++.+ ++.+.++..
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~----------------~~l~~h~~~v~~~~fs~-d~~~l~s~s 222 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLL----------------RELSGHTRGVSDVAFSP-DGSYLLSGS 222 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhh----------------ccccccccceeeeEECC-CCcEEEEec
Confidence 455677889999766666677666666533221 000 00012223467899998 665555434
Q ss_pred CC-eEEEEeCC-CCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290 116 YF-GLMVVGPN-GGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV 193 (343)
Q Consensus 116 ~~-gi~~~d~~-~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 193 (343)
.+ .+..+|.+ .+......... ...++++++.+ +|++.++... .+.|..+|..+++.
T Consensus 223 ~D~tiriwd~~~~~~~~~~l~gH----~~~v~~~~f~p-~g~~i~Sgs~-----------------D~tvriWd~~~~~~ 280 (456)
T KOG0266|consen 223 DDKTLRIWDLKDDGRNLKTLKGH----STYVTSVAFSP-DGNLLVSGSD-----------------DGTVRIWDVRTGEC 280 (456)
T ss_pred CCceEEEeeccCCCeEEEEecCC----CCceEEEEecC-CCCEEEEecC-----------------CCcEEEEeccCCeE
Confidence 43 48888883 33332222221 24578999999 4888886654 45688888887766
Q ss_pred EEe-ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCC-C-CceeeCCCCCEEEEecc
Q 019290 194 TVM-YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRF-P-DNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 194 ~~~-~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-p-~~i~~d~~G~lwi~~~~ 266 (343)
... ........++++.+++..+..+ +.++.|..||+.+... .-.+.+...... | ..+.++++|...++...
T Consensus 281 ~~~l~~hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 281 VRKLKGHSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSK-LCLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred EEeeeccCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCce-eeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 543 3444567889999999866555 6689999999876331 101122222221 2 44567888866555544
No 90
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.04 E-value=0.0067 Score=58.53 Aligned_cols=190 Identities=18% Similarity=0.163 Sum_probs=116.2
Q ss_pred eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290 98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
...+++...++.|-++...-| +.+++.++.... ..+......++.++..| ||.+.++...
T Consensus 310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV----lKQQgH~~~i~~l~YSp-Dgq~iaTG~e-------------- 370 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV----LKQQGHSDRITSLAYSP-DGQLIATGAE-------------- 370 (893)
T ss_pred eeEEEecccCCEEEEcCCccceEEEEEeecccee----eeccccccceeeEEECC-CCcEEEeccC--------------
Confidence 345556653455666644334 666665543321 11122245688999999 6988876543
Q ss_pred cCCCceEEEEeCCCCce-EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceee
Q 019290 177 GDRSGRLLKYDPLKKNV-TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKS 254 (343)
Q Consensus 177 ~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~ 254 (343)
.++|-.||..++-. .++..+-+...++.|+..++.+ ++.+.+|+|..||+..- .+++.|.. .+-....+++
T Consensus 371 ---DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~l-lssSLDGtVRAwDlkRY---rNfRTft~P~p~Qfscvav 443 (893)
T KOG0291|consen 371 ---DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVL-LSSSLDGTVRAWDLKRY---RNFRTFTSPEPIQFSCVAV 443 (893)
T ss_pred ---CCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEE-EEeecCCeEEeeeeccc---ceeeeecCCCceeeeEEEE
Confidence 56788888776543 3445556778899999888754 55667999999998642 34555542 2222456788
Q ss_pred CCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEec
Q 019290 255 DSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGS 332 (343)
Q Consensus 255 d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~ 332 (343)
|+.|.+.++... +.+ .|+..+. .|+++..+...++ +++....+ .+.+..+.
T Consensus 444 D~sGelV~AG~~--d~F---------------------~IfvWS~qTGqllDiLsGHEg----PVs~l~f~~~~~~LaS~ 496 (893)
T KOG0291|consen 444 DPSGELVCAGAQ--DSF---------------------EIFVWSVQTGQLLDILSGHEG----PVSGLSFSPDGSLLASG 496 (893)
T ss_pred cCCCCEEEeecc--ceE---------------------EEEEEEeecCeeeehhcCCCC----cceeeEEccccCeEEec
Confidence 999988877543 222 5666775 6888888876666 34433322 44555555
Q ss_pred CCCCeEEE
Q 019290 333 SVQPYVVV 340 (343)
Q Consensus 333 ~~~~~i~~ 340 (343)
...+.|.+
T Consensus 497 SWDkTVRi 504 (893)
T KOG0291|consen 497 SWDKTVRI 504 (893)
T ss_pred cccceEEE
Confidence 54445443
No 91
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.01 E-value=0.013 Score=54.41 Aligned_cols=198 Identities=11% Similarity=0.101 Sum_probs=107.1
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
...++-+.|||.++-+...+|.++.||..+++..-.... -+...+....++..|+..++.-+..
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~----------------~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED----------------SDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC----------------CCCccccEEEEEECCCCceEEEecC
Confidence 377999999999555667899999999988765433211 0133445677888874455555433
Q ss_pred CCeEEEEeCCCCeEEEcccccCCC---------------------------------------CccCcceeEEeCCCCeE
Q 019290 116 YFGLMVVGPNGGQAQQLASSAGGI---------------------------------------PFRFTNDLDIDPNTGIV 156 (343)
Q Consensus 116 ~~gi~~~d~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~i~~d~~dg~l 156 (343)
...+..+|..+.++..-....... ....+..+.+.+ |+..
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~ 334 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKT 334 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCE
Confidence 333555555544432211111000 011223333333 2332
Q ss_pred EEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec--CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcc
Q 019290 157 YFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN--GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGER 234 (343)
Q Consensus 157 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~ 234 (343)
.++. .-.|.|..++..++.--++.. ......+++.+..+. ++-.. .+..|.+.++.++.
T Consensus 335 i~Sg-----------------syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~g-~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 335 IYSG-----------------SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTIG-WDDTLRVISLKDNG 395 (603)
T ss_pred EEee-----------------ccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEEe-cCCeEEEEecccCc
Confidence 2222 225667777766554444321 223356777665454 44444 57789999886543
Q ss_pred ccccceeeecCCCCCCceeeCCCCCEEEEeccCCCcc
Q 019290 235 TTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKI 271 (343)
Q Consensus 235 ~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~ 271 (343)
- ..... .++...|-++++.++|.+-+....+.-.+
T Consensus 396 ~-t~~~~-~~lg~QP~~lav~~d~~~avv~~~~~iv~ 430 (603)
T KOG0318|consen 396 Y-TKSEV-VKLGSQPKGLAVLSDGGTAVVACISDIVL 430 (603)
T ss_pred c-cccce-eecCCCceeEEEcCCCCEEEEEecCcEEE
Confidence 3 22222 23455688999988875544443324433
No 92
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.00 E-value=0.0011 Score=63.63 Aligned_cols=253 Identities=15% Similarity=0.180 Sum_probs=142.4
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccc---------cccCC---CCCcccCCCcCCeeeEEE
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAR---------EICDG---STNTTLEPLCGRPLGIKF 103 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~---------~~~~~---~~~~~~~~~~~~p~gi~~ 103 (343)
...|..+..|+.++-.+..+..|+.|.....+++.+......... ...+- ...+......+.+.|..+
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 456667777877555666677677765543222222211111110 11110 011122334455679999
Q ss_pred eCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce
Q 019290 104 NPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR 182 (343)
Q Consensus 104 ~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 182 (343)
.| ++++++...+++ +..+..++-.-....... ..-+-++.+.|. |..|++.++. ...+
T Consensus 460 sP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH----~~PVwdV~F~P~-GyYFatas~D---------------~tAr 518 (707)
T KOG0263|consen 460 SP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH----LAPVWDVQFAPR-GYYFATASHD---------------QTAR 518 (707)
T ss_pred cc-cccceeeccCCcceeeeecccceeEEEecCC----CcceeeEEecCC-ceEEEecCCC---------------ceee
Confidence 99 777777656644 555555543222221211 122456778885 6666655442 2457
Q ss_pred EEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEE
Q 019290 183 LLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWI 262 (343)
Q Consensus 183 v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi 262 (343)
+|..|.. .-.+.++..+.....+.|+|+.. ...+++....+..||.... ...++|..-.+....+++.+.|+...
T Consensus 519 LWs~d~~-~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G---~~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 519 LWSTDHN-KPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTG---NSVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred eeecccC-CchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCC---cEEEEecCCCCceEEEEEcCCCceEe
Confidence 8877753 34455667788888999999876 3456777889999997642 23456543333345678899995555
Q ss_pred EeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEE
Q 019290 263 AMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVV 340 (343)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~ 340 (343)
+... .+.|..+|- .|+.+..+-... ..+..+... +|.+.+.+...++|.+
T Consensus 594 Sg~e------------------------d~~I~iWDl~~~~~v~~l~~Ht----~ti~SlsFS~dg~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 594 SGDE------------------------DGLIKIWDLANGSLVKQLKGHT----GTIYSLSFSRDGNVLASGGADNSVRL 645 (707)
T ss_pred eccc------------------------CCcEEEEEcCCCcchhhhhccc----CceeEEEEecCCCEEEecCCCCeEEE
Confidence 4433 234445563 566655543222 234444443 7888888877788877
Q ss_pred Ec
Q 019290 341 IK 342 (343)
Q Consensus 341 ~~ 342 (343)
.|
T Consensus 646 WD 647 (707)
T KOG0263|consen 646 WD 647 (707)
T ss_pred EE
Confidence 65
No 93
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.00 E-value=0.00019 Score=65.20 Aligned_cols=188 Identities=12% Similarity=0.078 Sum_probs=119.0
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
...++++..+|..+.++..+.-|-.||.+|+....=. ...-.|..+.+.+++.+++++..
T Consensus 260 ~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f--------------------~~~~~~~cvkf~pd~~n~fl~G~ 319 (503)
T KOG0282|consen 260 PVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF--------------------HLDKVPTCVKFHPDNQNIFLVGG 319 (503)
T ss_pred hhhhhhccccCCeeeeeecceeeeeeccccceEEEEE--------------------ecCCCceeeecCCCCCcEEEEec
Confidence 3678999999998888889999999999987654211 12224567888885546766645
Q ss_pred CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290 116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT 194 (343)
Q Consensus 116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 194 (343)
.++ |..+|.+++++..-.. ..+..++++.+-+ +|+-+++.+. ...+..|+.......
T Consensus 320 sd~ki~~wDiRs~kvvqeYd----~hLg~i~~i~F~~-~g~rFissSD-----------------dks~riWe~~~~v~i 377 (503)
T KOG0282|consen 320 SDKKIRQWDIRSGKVVQEYD----RHLGAILDITFVD-EGRRFISSSD-----------------DKSVRIWENRIPVPI 377 (503)
T ss_pred CCCcEEEEeccchHHHHHHH----hhhhheeeeEEcc-CCceEeeecc-----------------CccEEEEEcCCCccc
Confidence 554 9999999887432211 1235688898888 4888887764 223333433333332
Q ss_pred Eeec--CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec--CCCCCCceeeCCCCCEEEEecc
Q 019290 195 VMYN--GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE--MPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 195 ~~~~--~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
.+.. ..-..-.+..+|.+. .+++.+..+.|+.|.....-.+...+.|.. ..|.+-.+.+++||...+....
T Consensus 378 k~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds 452 (503)
T KOG0282|consen 378 KNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS 452 (503)
T ss_pred hhhcchhhccCcceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC
Confidence 2221 112234566778776 456677789999998654433233344432 4566666778888887777665
No 94
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.99 E-value=0.0004 Score=57.88 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=87.3
Q ss_pred CceEEEcCCCCeeEEEecC----------CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290 37 PESLAFDCNGEGPYVGVSD----------GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV 106 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~----------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~ 106 (343)
..+--.||+|+ +|.+++. |.++++-+ .++...+. ...+-++|++.+.+
T Consensus 111 ~NDgkvdP~Gr-yy~GtMad~~~~le~~~g~Ly~~~~-~h~v~~i~--------------------~~v~IsNgl~Wd~d 168 (310)
T KOG4499|consen 111 LNDGKVDPDGR-YYGGTMADFGDDLEPIGGELYSWLA-GHQVELIW--------------------NCVGISNGLAWDSD 168 (310)
T ss_pred cccCccCCCCc-eeeeeeccccccccccccEEEEecc-CCCceeee--------------------hhccCCcccccccc
Confidence 55677899999 6876542 34444433 33333332 22344789999886
Q ss_pred CCeEEEEeCCC-eE--EEEeCCCCeEEE---ccccc--CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecC
Q 019290 107 TCDLYIADAYF-GL--MVVGPNGGQAQQ---LASSA--GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGD 178 (343)
Q Consensus 107 ~~~l~v~~~~~-gi--~~~d~~~~~~~~---~~~~~--~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~ 178 (343)
...+|+.|+-+ .| +.||..+|.+.. +.... .......|.++++|. +|.||++...
T Consensus 169 ~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~n---------------- 231 (310)
T KOG4499|consen 169 AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFN---------------- 231 (310)
T ss_pred CcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEec----------------
Confidence 77899998654 36 677788876432 22211 111235688999999 5999999876
Q ss_pred CCceEEEEeCCCCceEE-eecCCCCcceeEEe-cCCCEEEEEE
Q 019290 179 RSGRLLKYDPLKKNVTV-MYNGLSFPNGVALS-NNNSFLLLAE 219 (343)
Q Consensus 179 ~~~~v~~~d~~~~~~~~-~~~~~~~~~~i~~~-~d~~~lyv~~ 219 (343)
.++|+++|+.+|+.-. +.-.-.....-||. ++-..+|++.
T Consensus 232 -g~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 232 -GGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred -CcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 6789999999888632 21111223444553 2224566654
No 95
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.98 E-value=0.0086 Score=51.56 Aligned_cols=239 Identities=9% Similarity=0.067 Sum_probs=140.8
Q ss_pred CCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeE-EE
Q 019290 34 VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDL-YI 112 (343)
Q Consensus 34 ~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l-~v 112 (343)
+.+..++-+.+|.+++..+..+|.+..||.-|....+..+ ....-+...++.| .+++ -.
T Consensus 55 ~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip-------------------l~s~WVMtCA~sP-Sg~~VAc 114 (343)
T KOG0286|consen 55 LNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP-------------------LPSSWVMTCAYSP-SGNFVAC 114 (343)
T ss_pred ccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe-------------------cCceeEEEEEECC-CCCeEEe
Confidence 3467889999999999999999999999987654333211 1222345678888 4443 33
Q ss_pred EeCCCe--EEEEeCC--CCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290 113 ADAYFG--LMVVGPN--GGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP 188 (343)
Q Consensus 113 ~~~~~g--i~~~d~~--~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 188 (343)
+.-.+- ||.+..+ .+.+ +......+. ..++....+-+ |+.|. +.++ ......+|.
T Consensus 115 GGLdN~Csiy~ls~~d~~g~~-~v~r~l~gH-tgylScC~f~d-D~~il-T~SG-----------------D~TCalWDi 173 (343)
T KOG0286|consen 115 GGLDNKCSIYPLSTRDAEGNV-RVSRELAGH-TGYLSCCRFLD-DNHIL-TGSG-----------------DMTCALWDI 173 (343)
T ss_pred cCcCceeEEEecccccccccc-eeeeeecCc-cceeEEEEEcC-CCceE-ecCC-----------------CceEEEEEc
Confidence 321232 4444422 1111 121111111 12344444444 34443 3322 345666788
Q ss_pred CCCceEE-eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccC
Q 019290 189 LKKNVTV-MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSA 267 (343)
Q Consensus 189 ~~~~~~~-~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~ 267 (343)
++++... +........++.+.|.....|++..-+..-..||+... .-.+.|.....-.+.+.+-|+|.-+.+...
T Consensus 174 e~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~---~c~qtF~ghesDINsv~ffP~G~afatGSD- 249 (343)
T KOG0286|consen 174 ETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG---QCVQTFEGHESDINSVRFFPSGDAFATGSD- 249 (343)
T ss_pred ccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc---ceeEeecccccccceEEEccCCCeeeecCC-
Confidence 7776554 33344556778888833347888777788888887642 223444433333566788888887777666
Q ss_pred CCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290 268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK 342 (343)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~ 342 (343)
.+....||- .+.++..|..+. ....++.+... .|+|.+++.....+.+.|
T Consensus 250 -----------------------D~tcRlyDlRaD~~~a~ys~~~--~~~gitSv~FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 250 -----------------------DATCRLYDLRADQELAVYSHDS--IICGITSVAFSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred -----------------------CceeEEEeecCCcEEeeeccCc--ccCCceeEEEcccccEEEeeecCCceeEee
Confidence 345667775 466777776432 35566666555 889888877776666554
No 96
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.98 E-value=0.0087 Score=51.53 Aligned_cols=228 Identities=15% Similarity=0.117 Sum_probs=132.9
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCC---eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSG---WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI 112 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v 112 (343)
..-.-++.|.|+.+-++.-++.--.|+..+.. ...+. ......-+..-...+.+ ++.|.-
T Consensus 99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~----------------r~l~gHtgylScC~f~d-D~~ilT 161 (343)
T KOG0286|consen 99 WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVS----------------RELAGHTGYLSCCRFLD-DNHILT 161 (343)
T ss_pred eEEEEEECCCCCeEEecCcCceeEEEecccccccccceee----------------eeecCccceeEEEEEcC-CCceEe
Confidence 34566788999944455555544455544321 00110 00011122233444555 778877
Q ss_pred EeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290 113 ADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN 192 (343)
Q Consensus 113 ~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 192 (343)
+....-...+|.++|+.........+ -+..+.+.|.+++.|++..- ......+|...+.
T Consensus 162 ~SGD~TCalWDie~g~~~~~f~GH~g----DV~slsl~p~~~ntFvSg~c-----------------D~~aklWD~R~~~ 220 (343)
T KOG0286|consen 162 GSGDMTCALWDIETGQQTQVFHGHTG----DVMSLSLSPSDGNTFVSGGC-----------------DKSAKLWDVRSGQ 220 (343)
T ss_pred cCCCceEEEEEcccceEEEEecCCcc----cEEEEecCCCCCCeEEeccc-----------------ccceeeeeccCcc
Confidence 74333478889999876654443332 25567777745888886543 2234445655443
Q ss_pred -eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec--CCCCCCceeeCCCCCEEEEeccCCC
Q 019290 193 -VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE--MPRFPDNIKSDSKGEFWIAMNSARG 269 (343)
Q Consensus 193 -~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwi~~~~~~~ 269 (343)
+..+...-+..|.+.|.|+|. -+++.+.++....||+..+.. ..+|.. ...-...+.++..|+|.++...
T Consensus 221 c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~---~a~ys~~~~~~gitSv~FS~SGRlLfagy~--- 293 (343)
T KOG0286|consen 221 CVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQE---LAVYSHDSIICGITSVAFSKSGRLLFAGYD--- 293 (343)
T ss_pred eeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcE---EeeeccCcccCCceeEEEcccccEEEeeec---
Confidence 334555556789999999986 577888888888899876433 334432 1112456788999999888755
Q ss_pred ccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecC
Q 019290 270 KIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSS 333 (343)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~ 333 (343)
...+...|. +++.+..+...+ +.++.+... +|...-++.
T Consensus 294 ---------------------d~~c~vWDtlk~e~vg~L~GHe----NRvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 294 ---------------------DFTCNVWDTLKGERVGVLAGHE----NRVSCLGVSPDGMAVATGS 334 (343)
T ss_pred ---------------------CCceeEeeccccceEEEeeccC----CeeEEEEECCCCcEEEecc
Confidence 235667775 787777776433 345555443 555444433
No 97
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.95 E-value=0.0081 Score=55.40 Aligned_cols=149 Identities=13% Similarity=0.065 Sum_probs=91.7
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
...++++.++|. +.++..+|.|..|++.+-.++.-.. ...+.+.+++... +|.|.-+..
T Consensus 248 ~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-------------------aH~ggv~~L~~lr-~GtllSGgK 306 (626)
T KOG2106|consen 248 FVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-------------------AHDGGVFSLCMLR-DGTLLSGGK 306 (626)
T ss_pred EEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-------------------ecCCceEEEEEec-CccEeecCc
Confidence 467999999999 7888899999999987654432111 2234567788887 888887643
Q ss_pred CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290 116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV 195 (343)
Q Consensus 116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 195 (343)
.+.|..+|-+ ++.+....-......+..++... +.+|+++.. +.|..=..+.+-...
T Consensus 307 DRki~~Wd~~---y~k~r~~elPe~~G~iRtv~e~~--~di~vGTtr------------------N~iL~Gt~~~~f~~~ 363 (626)
T KOG2106|consen 307 DRKIILWDDN---YRKLRETELPEQFGPIRTVAEGK--GDILVGTTR------------------NFILQGTLENGFTLT 363 (626)
T ss_pred cceEEecccc---ccccccccCchhcCCeeEEecCC--CcEEEeecc------------------ceEEEeeecCCceEE
Confidence 3447777732 33332221111234466666555 459997764 234443333222222
Q ss_pred eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEE
Q 019290 196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFW 229 (343)
Q Consensus 196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~ 229 (343)
........-+++.+|+.. +|++....+.+..|+
T Consensus 364 v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 364 VQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN 396 (626)
T ss_pred EEecccceeeEEcCCChh-heeeccCcceEEEcc
Confidence 233344677889988765 567766778888887
No 98
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.94 E-value=0.0099 Score=50.91 Aligned_cols=180 Identities=17% Similarity=0.158 Sum_probs=98.0
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290 107 TCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY 186 (343)
Q Consensus 107 ~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 186 (343)
++.+|+++....|+.+|..+|+...-... .. +.... ..++ ++.+|+... .+.++.+
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~-~~~~~--~~~~--~~~v~v~~~------------------~~~l~~~ 91 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDL-PG-PISGA--PVVD--GGRVYVGTS------------------DGSLYAL 91 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEEC-SS-CGGSG--EEEE--TTEEEEEET------------------TSEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeec-cc-cccce--eeec--ccccccccc------------------eeeeEec
Confidence 78999997667799999999987654332 11 11111 2444 378988663 3479999
Q ss_pred eCCCCceEEe-ec-C---CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCC-CC-------Ccee
Q 019290 187 DPLKKNVTVM-YN-G---LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPR-FP-------DNIK 253 (343)
Q Consensus 187 d~~~~~~~~~-~~-~---~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~p-------~~i~ 253 (343)
|..+|+..-- .. . ...........+++.+|+... .+.|+.+++.....+-+. ......+ .+ .+-.
T Consensus 92 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 92 DAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKY-PVGEPRGSSPISSFSDINGSP 169 (238)
T ss_dssp ETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEE-ESSTT-SS--EEEETTEEEEE
T ss_pred ccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEe-ecCCCCCCcceeeecccccce
Confidence 9877876432 11 1 111112222233667777754 788999997642110111 1100000 00 0111
Q ss_pred eCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCCCCccCCceeEEEeCCEEEEec
Q 019290 254 SDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGS 332 (343)
Q Consensus 254 ~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~ 332 (343)
+-.+|.++++... +.++++|.. |+.. ...+.. .........++.||+++
T Consensus 170 ~~~~~~v~~~~~~-------------------------g~~~~~d~~tg~~~--w~~~~~---~~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 170 VISDGRVYVSSGD-------------------------GRVVAVDLATGEKL--WSKPIS---GIYSLPSVDGGTLYVTS 219 (238)
T ss_dssp ECCTTEEEEECCT-------------------------SSEEEEETTTTEEE--EEECSS----ECECEECCCTEEEEEE
T ss_pred EEECCEEEEEcCC-------------------------CeEEEEECCCCCEE--EEecCC---CccCCceeeCCEEEEEe
Confidence 2235688888765 235667764 5433 222211 12233556689999999
Q ss_pred CCCCeEEEEcC
Q 019290 333 SVQPYVVVIKA 343 (343)
Q Consensus 333 ~~~~~i~~~~~ 343 (343)
....+..+|+
T Consensus 220 -~~~~l~~~d~ 229 (238)
T PF13360_consen 220 -SDGRLYALDL 229 (238)
T ss_dssp -TTTEEEEEET
T ss_pred -CCCEEEEEEC
Confidence 6778877763
No 99
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.90 E-value=0.0012 Score=60.32 Aligned_cols=139 Identities=17% Similarity=0.294 Sum_probs=91.8
Q ss_pred CCCCeeEEEecCC-EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEE
Q 019290 44 CNGEGPYVGVSDG-RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVV 122 (343)
Q Consensus 44 ~~g~~l~~~~~~g-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~ 122 (343)
.+++-+.+++.+| .|..||..+++++.+. ...+....+.+++++..+.+++....++.+
T Consensus 369 ~~~e~~vigt~dgD~l~iyd~~~~e~kr~e--------------------~~lg~I~av~vs~dGK~~vvaNdr~el~vi 428 (668)
T COG4946 369 VDPEGDVIGTNDGDKLGIYDKDGGEVKRIE--------------------KDLGNIEAVKVSPDGKKVVVANDRFELWVI 428 (668)
T ss_pred cCCcceEEeccCCceEEEEecCCceEEEee--------------------CCccceEEEEEcCCCcEEEEEcCceEEEEE
Confidence 3433455666666 7888888888777663 455677889999844558888655569999
Q ss_pred eCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC
Q 019290 123 GPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF 202 (343)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 202 (343)
|.++|.++.+-... ...+.++++.++ ++ |++=. -+++--...|-.+|.+++++-.+.+.-..
T Consensus 429 didngnv~~idkS~----~~lItdf~~~~n-sr-~iAYa------------fP~gy~tq~Iklydm~~~Kiy~vTT~ta~ 490 (668)
T COG4946 429 DIDNGNVRLIDKSE----YGLITDFDWHPN-SR-WIAYA------------FPEGYYTQSIKLYDMDGGKIYDVTTPTAY 490 (668)
T ss_pred EecCCCeeEecccc----cceeEEEEEcCC-ce-eEEEe------------cCcceeeeeEEEEecCCCeEEEecCCccc
Confidence 99999988764332 245788899983 55 44321 01111123466788887776655544444
Q ss_pred cceeEEecCCCEEEEEEc
Q 019290 203 PNGVALSNNNSFLLLAES 220 (343)
Q Consensus 203 ~~~i~~~~d~~~lyv~~~ 220 (343)
-..-+|++|++.||+...
T Consensus 491 DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 491 DFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred ccCcccCCCCcEEEEEec
Confidence 556678999999998754
No 100
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.89 E-value=0.013 Score=51.73 Aligned_cols=106 Identities=21% Similarity=0.218 Sum_probs=66.0
Q ss_pred CCeeeEEEeCCCC-eEEEEeCCCe--EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeE-EEEeCCcccccccce
Q 019290 96 GRPLGIKFNPVTC-DLYIADAYFG--LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIV-YFTDSSIYFQRRQYF 171 (343)
Q Consensus 96 ~~p~gi~~~~~~~-~l~v~~~~~g--i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l-~v~~~~~~~~~~~~~ 171 (343)
.+.++++.++... -+.|+- .-| .+++|.++++.........+.. +--..++++ ||++ |.++...
T Consensus 5 ~RgH~~a~~p~~~~avafaR-RPG~~~~v~D~~~g~~~~~~~a~~gRH--FyGHg~fs~-dG~~LytTEnd~-------- 72 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFAR-RPGTFALVFDCRTGQLLQRLWAPPGRH--FYGHGVFSP-DGRLLYTTENDY-------- 72 (305)
T ss_pred ccccceeeCCCCCeEEEEEe-CCCcEEEEEEcCCCceeeEEcCCCCCE--EecCEEEcC-CCCEEEEecccc--------
Confidence 4568888888333 345552 333 8899999988765443333322 222457777 5664 4444431
Q ss_pred eeeeecCCCceEEEEeCCCCceE---EeecCCCCcceeEEecCCCEEEEEE
Q 019290 172 MSIATGDRSGRLLKYDPLKKNVT---VMYNGLSFPNGVALSNNNSFLLLAE 219 (343)
Q Consensus 172 ~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~i~~~~d~~~lyv~~ 219 (343)
....|.|-.||.. .... .+.+....|-.+.+.+|+++|.|++
T Consensus 73 -----~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 73 -----ETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred -----CCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 2336778888876 2222 3445667788899999999998874
No 101
>PHA02713 hypothetical protein; Provisional
Probab=97.88 E-value=0.0089 Score=58.29 Aligned_cols=221 Identities=8% Similarity=0.044 Sum_probs=114.2
Q ss_pred EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC-------CeEEEEeCCCCeE
Q 019290 57 RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY-------FGLMVVGPNGGQA 129 (343)
Q Consensus 57 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~-------~gi~~~d~~~~~~ 129 (343)
.+..||+.+.+|..++..+ . ....++.+.. ++.||+.... +.+++||+.+..+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp-----------------~-~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W 332 (557)
T PHA02713 273 CILVYNINTMEYSVISTIP-----------------N-HIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIH 332 (557)
T ss_pred CEEEEeCCCCeEEECCCCC-----------------c-cccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeE
Confidence 4788999998888764211 0 0112344554 5788887431 2388999998888
Q ss_pred EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC--cceeE
Q 019290 130 QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF--PNGVA 207 (343)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~i~ 207 (343)
..++...... .-..++.- +|.||+...... ......+.+||+.+.++..+..-... ..+.+
T Consensus 333 ~~~~~m~~~R---~~~~~~~~--~g~IYviGG~~~------------~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~ 395 (557)
T PHA02713 333 VELPPMIKNR---CRFSLAVI--DDTIYAIGGQNG------------TNVERTIECYTMGDDKWKMLPDMPIALSSYGMC 395 (557)
T ss_pred eeCCCCcchh---hceeEEEE--CCEEEEECCcCC------------CCCCceEEEEECCCCeEEECCCCCcccccccEE
Confidence 7765443221 11233333 379998543210 01124589999998887764321111 11222
Q ss_pred EecCCCEEEEEEcC-----------------------CCeEEEEEccCccccccceeeecCCC--CCCceeeCCCCCEEE
Q 019290 208 LSNNNSFLLLAESA-----------------------TLKILRFWLQGERTTYTPQLFAEMPR--FPDNIKSDSKGEFWI 262 (343)
Q Consensus 208 ~~~d~~~lyv~~~~-----------------------~~~i~~~~~~~~~~~~~~~~~~~~~~--~p~~i~~d~~G~lwi 262 (343)
.. + +.+|+..-. ...+.+||+..+ ........+. ..-+++ --+|+||+
T Consensus 396 ~~-~-g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td----~W~~v~~m~~~r~~~~~~-~~~~~IYv 468 (557)
T PHA02713 396 VL-D-QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN----IWETLPNFWTGTIRPGVV-SHKDDIYV 468 (557)
T ss_pred EE-C-CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC----eEeecCCCCcccccCcEE-EECCEEEE
Confidence 22 3 457886422 235788887652 2222222211 111233 23578998
Q ss_pred EeccCCCccccccccccccccCCCcccCCCeEEEECCCC--CEEEEeeCCCCCccCCceeEEEeCCEEEEecCCCC--eE
Q 019290 263 AMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNG--NVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQP--YV 338 (343)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~--~i 338 (343)
.....+.... ...+.+|||+. +.......|.. . ....+..-+|+||+.+.... .+
T Consensus 469 ~GG~~~~~~~------------------~~~ve~Ydp~~~~~W~~~~~m~~~-r--~~~~~~~~~~~iyv~Gg~~~~~~~ 527 (557)
T PHA02713 469 VCDIKDEKNV------------------KTCIFRYNTNTYNGWELITTTESR-L--SALHTILHDNTIMMLHCYESYMLQ 527 (557)
T ss_pred EeCCCCCCcc------------------ceeEEEecCCCCCCeeEccccCcc-c--ccceeEEECCEEEEEeeecceeeh
Confidence 7543111000 12578999975 45544333332 1 22333344899997665443 34
Q ss_pred EEEc
Q 019290 339 VVIK 342 (343)
Q Consensus 339 ~~~~ 342 (343)
-+||
T Consensus 528 e~yd 531 (557)
T PHA02713 528 DTFN 531 (557)
T ss_pred hhcC
Confidence 4444
No 102
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.87 E-value=0.044 Score=56.02 Aligned_cols=187 Identities=11% Similarity=0.070 Sum_probs=104.9
Q ss_pred CceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 37 PESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 37 p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
..++++.+. ++.+.++..++.|..||..++...... ........++++++.++.++++..
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~-------------------~~H~~~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM-------------------KEHEKRVWSIDYSSADPTLLASGS 595 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe-------------------cCCCCCEEEEEEcCCCCCEEEEEc
Confidence 457788764 666777888999999998765322111 112234678889864555554434
Q ss_pred CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc--
Q 019290 116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN-- 192 (343)
Q Consensus 116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-- 192 (343)
.+| |..+|.+++........ . ..+..+.+.+.+|.++++... .+.|..||....+
T Consensus 596 ~Dg~v~iWd~~~~~~~~~~~~--~---~~v~~v~~~~~~g~~latgs~-----------------dg~I~iwD~~~~~~~ 653 (793)
T PLN00181 596 DDGSVKLWSINQGVSIGTIKT--K---ANICCVQFPSESGRSLAFGSA-----------------DHKVYYYDLRNPKLP 653 (793)
T ss_pred CCCEEEEEECCCCcEEEEEec--C---CCeEEEEEeCCCCCEEEEEeC-----------------CCeEEEEECCCCCcc
Confidence 445 88899887653322111 1 234556664424665554332 5678888876443
Q ss_pred eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcccc---ccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290 193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTT---YTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
...+.........+.+. ++..+ ++...++.|..|++.....- .....+.........+.++++|.+.++...
T Consensus 654 ~~~~~~h~~~V~~v~f~-~~~~l-vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~ 728 (793)
T PLN00181 654 LCTMIGHSKTVSYVRFV-DSSTL-VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE 728 (793)
T ss_pred ceEecCCCCCEEEEEEe-CCCEE-EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 22233333345667775 55544 45556889999997532100 111122111222345678888877666554
No 103
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.0014 Score=56.94 Aligned_cols=223 Identities=13% Similarity=0.157 Sum_probs=118.8
Q ss_pred cccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEE-eeecCCCccccccCCCCCcccCCCcCCeeeEEEe
Q 019290 26 YQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTE-FATTAPHRAREICDGSTNTTLEPLCGRPLGIKFN 104 (343)
Q Consensus 26 ~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~ 104 (343)
.++|-+++-+.|+|..++|||+.+..+.-+|-|-.|+..+++... +.-.+. .........+..|.|+
T Consensus 205 ~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq------------d~fMMmd~aVlci~FS 272 (508)
T KOG0275|consen 205 ARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ------------DNFMMMDDAVLCISFS 272 (508)
T ss_pred hhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh------------cceeecccceEEEeec
Confidence 356666766789999999999988888889999999887765431 100000 0000111224456666
Q ss_pred CCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceE
Q 019290 105 PVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRL 183 (343)
Q Consensus 105 ~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v 183 (343)
. +..+..+...+| |-.+-.++|+--+-... +....+..+.+.. |+.-..+.+- ...
T Consensus 273 R-DsEMlAsGsqDGkIKvWri~tG~ClRrFdr---AHtkGvt~l~FSr-D~SqiLS~sf------------------D~t 329 (508)
T KOG0275|consen 273 R-DSEMLASGSQDGKIKVWRIETGQCLRRFDR---AHTKGVTCLSFSR-DNSQILSASF------------------DQT 329 (508)
T ss_pred c-cHHHhhccCcCCcEEEEEEecchHHHHhhh---hhccCeeEEEEcc-Ccchhhcccc------------------cce
Confidence 6 333333223444 44444445532111111 1123456677777 4654443321 123
Q ss_pred EEE-eCCCCce-EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCC-CceeeCCCC-C
Q 019290 184 LKY-DPLKKNV-TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFP-DNIKSDSKG-E 259 (343)
Q Consensus 184 ~~~-d~~~~~~-~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d~~G-~ 259 (343)
.|+ ..++|+. +.+....+..+...+.+||..+. +.+.++.|.+|+..+..-+..++.... ..| +.+..-|.. .
T Consensus 330 vRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~--d~~vnsv~~~PKnpe 406 (508)
T KOG0275|consen 330 VRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGT--DYPVNSVILLPKNPE 406 (508)
T ss_pred EEEeccccchhHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCC--cccceeEEEcCCCCc
Confidence 333 3444543 23334456678888999998655 445688999998764211122222111 111 223333332 3
Q ss_pred EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCC
Q 019290 260 FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGN 310 (343)
Q Consensus 260 lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~ 310 (343)
-+|.++. .+.++..+-.|+.+..++..
T Consensus 407 h~iVCNr------------------------sntv~imn~qGQvVrsfsSG 433 (508)
T KOG0275|consen 407 HFIVCNR------------------------SNTVYIMNMQGQVVRSFSSG 433 (508)
T ss_pred eEEEEcC------------------------CCeEEEEeccceEEeeeccC
Confidence 3444454 35778788888888888654
No 104
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=0.012 Score=51.33 Aligned_cols=213 Identities=15% Similarity=0.194 Sum_probs=123.0
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
..+++++++|+.|.++..+..+-.||...+. ..++. -.....+..+++.+.+..++.-
T Consensus 68 i~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir---------------------f~spv~~~q~hp~k~n~~va~~ 126 (405)
T KOG1273|consen 68 ITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR---------------------FDSPVWGAQWHPRKRNKCVATI 126 (405)
T ss_pred eeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE---------------------ccCccceeeeccccCCeEEEEE
Confidence 5699999999999998889989999986543 22221 1123467778886777777642
Q ss_pred CC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290 116 YF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT 194 (343)
Q Consensus 116 ~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 194 (343)
-. .-+.++....+.+.++...++.....+....+|+. |...++.. ++|.+..|+..+-+..
T Consensus 127 ~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~-g~yIitGt-----------------sKGkllv~~a~t~e~v 188 (405)
T KOG1273|consen 127 MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR-GKYIITGT-----------------SKGKLLVYDAETLECV 188 (405)
T ss_pred ecCCcEEEEecCCceeeccCCCccccccccccccccCC-CCEEEEec-----------------CcceEEEEecchheee
Confidence 22 23444444344555544444433344445567885 66544333 3678888887655432
Q ss_pred E-e-ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC---ccccccceeeec----CCCC-CCceeeCCCCCEEEEe
Q 019290 195 V-M-YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG---ERTTYTPQLFAE----MPRF-PDNIKSDSKGEFWIAM 264 (343)
Q Consensus 195 ~-~-~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~---~~~~~~~~~~~~----~~~~-p~~i~~d~~G~lwi~~ 264 (343)
. + ........-|.++..|+.+. .++.+..|..|++.. .++-++.+...+ .+.. =...+++.+|...++.
T Consensus 189 as~rits~~~IK~I~~s~~g~~li-iNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~ 267 (405)
T KOG1273|consen 189 ASFRITSVQAIKQIIVSRKGRFLI-INTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG 267 (405)
T ss_pred eeeeechheeeeEEEEeccCcEEE-EecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEec
Confidence 1 1 01123345677777887654 456677777787542 111012221111 1111 1346788899766665
Q ss_pred ccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCC
Q 019290 265 NSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEG 312 (343)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~ 312 (343)
.. . .+.+|-.-. -|.++.+++.+.|
T Consensus 268 s~--~---------------------aHaLYIWE~~~GsLVKILhG~kg 293 (405)
T KOG1273|consen 268 SA--R---------------------AHALYIWEKSIGSLVKILHGTKG 293 (405)
T ss_pred cc--c---------------------ceeEEEEecCCcceeeeecCCch
Confidence 43 1 347777765 4888888877664
No 105
>PRK13684 Ycf48-like protein; Provisional
Probab=97.81 E-value=0.013 Score=53.23 Aligned_cols=196 Identities=14% Similarity=0.197 Sum_probs=99.5
Q ss_pred cccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEE
Q 019290 24 KSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKF 103 (343)
Q Consensus 24 ~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~ 103 (343)
...++..+|.-....+|++..+.+ .|+....+.|++-...+..|....... +........+.+
T Consensus 35 ~~W~~~~~~~~~~l~~v~F~d~~~-g~avG~~G~il~T~DgG~tW~~~~~~~----------------~~~~~~l~~v~~ 97 (334)
T PRK13684 35 SPWQVIDLPTEANLLDIAFTDPNH-GWLVGSNRTLLETNDGGETWEERSLDL----------------PEENFRLISISF 97 (334)
T ss_pred CCcEEEecCCCCceEEEEEeCCCc-EEEEECCCEEEEEcCCCCCceECccCC----------------cccccceeeeEE
Confidence 345666777444677899986666 554446788888766666777653210 001112345666
Q ss_pred eCCCCeEEEEeCCCe-EEEEeCCCC-eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCc
Q 019290 104 NPVTCDLYIADAYFG-LMVVGPNGG-QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSG 181 (343)
Q Consensus 104 ~~~~~~l~v~~~~~g-i~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~ 181 (343)
.. +..|++. ..| |++- .+.| .++.+.... ..+ ..+..+.... ++.+|++.. .+
T Consensus 98 ~~--~~~~~~G-~~g~i~~S-~DgG~tW~~~~~~~-~~~-~~~~~i~~~~-~~~~~~~g~------------------~G 152 (334)
T PRK13684 98 KG--DEGWIVG-QPSLLLHT-TDGGKNWTRIPLSE-KLP-GSPYLITALG-PGTAEMATN------------------VG 152 (334)
T ss_pred cC--CcEEEeC-CCceEEEE-CCCCCCCeEccCCc-CCC-CCceEEEEEC-CCcceeeec------------------cc
Confidence 54 4567763 445 5554 3433 455442110 111 1233343333 255565332 45
Q ss_pred eEEEEeCCCCceEEeecCC-CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCC
Q 019290 182 RLLKYDPLKKNVTVMYNGL-SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGE 259 (343)
Q Consensus 182 ~v~~~d~~~~~~~~~~~~~-~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~ 259 (343)
.|++-+-.+...+.+..+. ...+++.+.+++. ++++. ..+.+++-..++. ........ ......++.+.++|+
T Consensus 153 ~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~-~v~~g-~~G~i~~s~~~gg---~tW~~~~~~~~~~l~~i~~~~~g~ 227 (334)
T PRK13684 153 AIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGK-YVAVS-SRGNFYSTWEPGQ---TAWTPHQRNSSRRLQSMGFQPDGN 227 (334)
T ss_pred eEEEECCCCCCceeCcCCCcceEEEEEECCCCe-EEEEe-CCceEEEEcCCCC---CeEEEeeCCCcccceeeeEcCCCC
Confidence 6777654444555443332 2356777777764 33333 3566665422221 11222211 112345667778889
Q ss_pred EEEEecc
Q 019290 260 FWIAMNS 266 (343)
Q Consensus 260 lwi~~~~ 266 (343)
+|++...
T Consensus 228 ~~~vg~~ 234 (334)
T PRK13684 228 LWMLARG 234 (334)
T ss_pred EEEEecC
Confidence 9988765
No 106
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.81 E-value=0.0047 Score=54.18 Aligned_cols=151 Identities=19% Similarity=0.141 Sum_probs=96.3
Q ss_pred CeeeEEEeCCCCeEEEEeCC-CeEEEEeCCCCeEEEcccc--cC--CCC-ccCcceeEEeCCCCeEEEEeCCcccccccc
Q 019290 97 RPLGIKFNPVTCDLYIADAY-FGLMVVGPNGGQAQQLASS--AG--GIP-FRFTNDLDIDPNTGIVYFTDSSIYFQRRQY 170 (343)
Q Consensus 97 ~p~gi~~~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~--~~--~~~-~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~ 170 (343)
..|.|++ . ++.+|+.++. +.+..+++. ..+.+..+. .. .+. -=+.|++|.+. +.-.|++.-+..-....|
T Consensus 104 diHdia~-~-~~~l~fVNT~fSCLatl~~~-~SF~P~WkPpFIs~la~eDRCHLNGlA~~~-g~p~yVTa~~~sD~~~gW 179 (335)
T TIGR03032 104 DAHDLAL-G-AGRLLFVNTLFSCLATVSPD-YSFVPLWKPPFISKLAPEDRCHLNGMALDD-GEPRYVTALSQSDVADGW 179 (335)
T ss_pred chhheee-c-CCcEEEEECcceeEEEECCC-CccccccCCccccccCccCceeecceeeeC-CeEEEEEEeeccCCcccc
Confidence 4678888 3 6788887665 448888775 334333221 10 111 13579999987 456888764421111122
Q ss_pred eeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCC
Q 019290 171 FMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPD 250 (343)
Q Consensus 171 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~ 250 (343)
..+ ...+++. +|..+++ .+..++..|.+-.++ +| .||+.++..+.|.++|.++ ++.+.++..+++|.
T Consensus 180 R~~----~~~gG~v-idv~s~e--vl~~GLsmPhSPRWh-dg-rLwvldsgtGev~~vD~~~----G~~e~Va~vpG~~r 246 (335)
T TIGR03032 180 REG----RRDGGCV-IDIPSGE--VVASGLSMPHSPRWY-QG-KLWLLNSGRGELGYVDPQA----GKFQPVAFLPGFTR 246 (335)
T ss_pred ccc----ccCCeEE-EEeCCCC--EEEcCccCCcCCcEe-CC-eEEEEECCCCEEEEEcCCC----CcEEEEEECCCCCc
Confidence 111 1133443 6666554 467888999998887 44 4999999999999999875 55667778999999
Q ss_pred ceeeCCCCCEE-EEecc
Q 019290 251 NIKSDSKGEFW-IAMNS 266 (343)
Q Consensus 251 ~i~~d~~G~lw-i~~~~ 266 (343)
|+.+. |++. |+...
T Consensus 247 GL~f~--G~llvVgmSk 261 (335)
T TIGR03032 247 GLAFA--GDFAFVGLSK 261 (335)
T ss_pred cccee--CCEEEEEecc
Confidence 99988 7655 55543
No 107
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.81 E-value=0.0081 Score=53.57 Aligned_cols=101 Identities=15% Similarity=0.190 Sum_probs=57.9
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC----CCCeEEE
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP----VTCDLYI 112 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~----~~~~l~v 112 (343)
..++++.|||..+-.+..+|.|..|||.+++..- .........+.+++..| ...+.+.
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g------------------~~l~gH~K~It~Lawep~hl~p~~r~la 221 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG------------------RALRGHKKWITALAWEPLHLVPPCRRLA 221 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEEecCCCCCccc------------------ccccCcccceeEEeecccccCCCcccee
Confidence 6689999999988888999999999998764210 00001111234444432 1334444
Q ss_pred EeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEe
Q 019290 113 ADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTD 160 (343)
Q Consensus 113 ~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~ 160 (343)
+...+| +..+|...++........ ...+..+.... +|-||-+-
T Consensus 222 s~skDg~vrIWd~~~~~~~~~lsgH----T~~VTCvrwGG-~gliySgS 265 (480)
T KOG0271|consen 222 SSSKDGSVRIWDTKLGTCVRTLSGH----TASVTCVRWGG-EGLIYSGS 265 (480)
T ss_pred cccCCCCEEEEEccCceEEEEeccC----ccceEEEEEcC-CceEEecC
Confidence 434455 888898876554432211 12345555555 36666543
No 108
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.79 E-value=0.0026 Score=61.81 Aligned_cols=188 Identities=12% Similarity=0.109 Sum_probs=118.1
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
...++|.+.=|++.+++...|.|-+|+.+.+... .|.. .+.......|++.|. -+++.|+.
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~-----------------~~ah~~~V~gla~D~-~n~~~vsa 511 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD-----------------SPAHKGEVTGLAVDG-TNRLLVSA 511 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc-----------------CccccCceeEEEecC-CCceEEEc
Confidence 4668888999998889999999999998775322 2210 012334567999997 78888887
Q ss_pred CCCeE-EEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290 115 AYFGL-MVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV 193 (343)
Q Consensus 115 ~~~gi-~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 193 (343)
...|+ ..+|..+..... ....+ ..+..+..... ..+++.... .-.|..+|..+.++
T Consensus 512 ~~~Gilkfw~f~~k~l~~--~l~l~---~~~~~iv~hr~-s~l~a~~~d-----------------df~I~vvD~~t~kv 568 (910)
T KOG1539|consen 512 GADGILKFWDFKKKVLKK--SLRLG---SSITGIVYHRV-SDLLAIALD-----------------DFSIRVVDVVTRKV 568 (910)
T ss_pred cCcceEEEEecCCcceee--eeccC---CCcceeeeeeh-hhhhhhhcC-----------------ceeEEEEEchhhhh
Confidence 77884 456776543221 11111 23444444442 333332211 34588888776665
Q ss_pred E-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCC
Q 019290 194 T-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARG 269 (343)
Q Consensus 194 ~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~ 269 (343)
. .+.......++++|++||+.|..+ +.++.|..||+.+... +..+. .+.-+-.+...|.|.+..+.+.+..
T Consensus 569 vR~f~gh~nritd~~FS~DgrWlisa-smD~tIr~wDlpt~~l---ID~~~-vd~~~~sls~SPngD~LAT~Hvd~~ 640 (910)
T KOG1539|consen 569 VREFWGHGNRITDMTFSPDGRWLISA-SMDSTIRTWDLPTGTL---IDGLL-VDSPCTSLSFSPNGDFLATVHVDQN 640 (910)
T ss_pred hHHhhccccceeeeEeCCCCcEEEEe-ecCCcEEEEeccCcce---eeeEe-cCCcceeeEECCCCCEEEEEEecCc
Confidence 4 344556778999999999976655 4678999999875322 11221 2222456777888888877776433
No 109
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.78 E-value=0.0043 Score=56.36 Aligned_cols=242 Identities=15% Similarity=0.085 Sum_probs=130.2
Q ss_pred CceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 37 PESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 37 p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
..+|.+.|. -..+|....+|.|...|.++..+.++... ......-.++.+..+++.+++++.
T Consensus 237 Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-----------------~~d~~~fs~~d~~~e~~~vl~~~~ 299 (498)
T KOG4328|consen 237 VSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSL-----------------DTDNIWFSSLDFSAESRSVLFGDN 299 (498)
T ss_pred ccceEecCCChhheeeeccCceeeeeeecchhhHHHhhc-----------------CccceeeeeccccCCCccEEEeec
Confidence 457777764 23567777777777777766544333210 000111235566666788999875
Q ss_pred CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC--CCce
Q 019290 116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL--KKNV 193 (343)
Q Consensus 116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~--~~~~ 193 (343)
...+..+|+++++-+........ ..+.++++.|. ..-++++.+. ...+-.||.. .++.
T Consensus 300 ~G~f~~iD~R~~~s~~~~~~lh~---kKI~sv~~NP~-~p~~laT~s~----------------D~T~kIWD~R~l~~K~ 359 (498)
T KOG4328|consen 300 VGNFNVIDLRTDGSEYENLRLHK---KKITSVALNPV-CPWFLATASL----------------DQTAKIWDLRQLRGKA 359 (498)
T ss_pred ccceEEEEeecCCccchhhhhhh---cccceeecCCC-Cchheeeccc----------------CcceeeeehhhhcCCC
Confidence 54467788877654333222222 25788999985 5545544331 2223334432 1222
Q ss_pred EEeec---CCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc--CccccccceeeecCCC-----CCCceeeCCCCCEEEE
Q 019290 194 TVMYN---GLSFPNGVALSNNNSFLLLAESATLKILRFWLQ--GERTTYTPQLFAEMPR-----FPDNIKSDSKGEFWIA 263 (343)
Q Consensus 194 ~~~~~---~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~-----~p~~i~~d~~G~lwi~ 263 (343)
+.+.. .-...+..+|+|.+..| ++....+.|.+|+-. ++.. .....+..... .|---+.|++-++.+.
T Consensus 360 sp~lst~~HrrsV~sAyFSPs~gtl-~TT~~D~~IRv~dss~~sa~~-~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~v 437 (498)
T KOG4328|consen 360 SPFLSTLPHRRSVNSAYFSPSGGTL-LTTCQDNEIRVFDSSCISAKD-EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVV 437 (498)
T ss_pred CcceecccccceeeeeEEcCCCCce-EeeccCCceEEeecccccccC-CccceeeccCcccccccchhheeCCCccEEEE
Confidence 11222 22346788999999884 555678899999852 1111 11111111111 1223356888777666
Q ss_pred eccCCCccccccccccccccCCCcccCCCeEEEECCCCCE-EEEeeCCCCCccCCceeEEEeCCEEEEecCCCCeEEEE
Q 019290 264 MNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNV-VDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQPYVVVI 341 (343)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~ 341 (343)
.+. ...|-.||+++++ +..+++|....+..+-.+.+.+..+.-|+..+..|+++
T Consensus 438 g~~------------------------~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 438 GRY------------------------PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ecc------------------------CcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 554 2256788998766 55566665533444444444444455555555555554
No 110
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=97.77 E-value=0.007 Score=53.52 Aligned_cols=183 Identities=14% Similarity=0.064 Sum_probs=103.8
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
...++++||-...+.++..++.+-.+|..++.++.-. ........++++++..-.||.+.
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-------------------tGhi~~vr~vavS~rHpYlFs~g- 212 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-------------------TGHIETVRGVAVSKRHPYLFSAG- 212 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-------------------cchhheeeeeeecccCceEEEec-
Confidence 3679999999774446678888999999987654321 12233467899987455666663
Q ss_pred CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc-e
Q 019290 116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN-V 193 (343)
Q Consensus 116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~ 193 (343)
.++ |-.+|++..++.+-.. + .+..+..+++.|. -++.++... ...+-.+|..++. +
T Consensus 213 edk~VKCwDLe~nkvIR~Yh---G-HlS~V~~L~lhPT-ldvl~t~gr-----------------Dst~RvWDiRtr~~V 270 (460)
T KOG0285|consen 213 EDKQVKCWDLEYNKVIRHYH---G-HLSGVYCLDLHPT-LDVLVTGGR-----------------DSTIRVWDIRTRASV 270 (460)
T ss_pred CCCeeEEEechhhhhHHHhc---c-ccceeEEEecccc-ceeEEecCC-----------------cceEEEeeecccceE
Confidence 444 7889998766543221 1 2355778888885 666665433 2334455665443 3
Q ss_pred EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEe
Q 019290 194 TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM 264 (343)
Q Consensus 194 ~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~ 264 (343)
..+...-.....+...+-...+ ++.+.+..|..||+.... ....+..-......++..|+-+++.+.
T Consensus 271 ~~l~GH~~~V~~V~~~~~dpqv-it~S~D~tvrlWDl~agk---t~~tlt~hkksvral~lhP~e~~fASa 337 (460)
T KOG0285|consen 271 HVLSGHTNPVASVMCQPTDPQV-ITGSHDSTVRLWDLRAGK---TMITLTHHKKSVRALCLHPKENLFASA 337 (460)
T ss_pred EEecCCCCcceeEEeecCCCce-EEecCCceEEEeeeccCc---eeEeeecccceeeEEecCCchhhhhcc
Confidence 3333333334444443333333 456678899999986422 112222211123445555555555443
No 111
>PTZ00420 coronin; Provisional
Probab=97.76 E-value=0.047 Score=53.00 Aligned_cols=161 Identities=13% Similarity=0.101 Sum_probs=92.8
Q ss_pred CCceEEEcCC-CCeeEEEecCCEEEEEEcCCCCe--EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290 36 GPESLAFDCN-GEGPYVGVSDGRILKWKAANSGW--TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI 112 (343)
Q Consensus 36 ~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v 112 (343)
...++++.++ ++.+.++..++.|..||..++.. ..+... . .........+..+++++....+++
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p-------~------~~L~gH~~~V~sVaf~P~g~~iLa 142 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDP-------Q------CILKGHKKKISIIDWNPMNYYIMC 142 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccc-------e------EEeecCCCcEEEEEECCCCCeEEE
Confidence 4678999986 77778888999999999764321 100000 0 000112234678899984444544
Q ss_pred EeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC
Q 019290 113 ADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK 191 (343)
Q Consensus 113 ~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 191 (343)
+...++ |..+|.++++...... .. ..+.++++++ +|.++++... .+.|..||+.++
T Consensus 143 SgS~DgtIrIWDl~tg~~~~~i~--~~---~~V~Slswsp-dG~lLat~s~-----------------D~~IrIwD~Rsg 199 (568)
T PTZ00420 143 SSGFDSFVNIWDIENEKRAFQIN--MP---KKLSSLKWNI-KGNLLSGTCV-----------------GKHMHIIDPRKQ 199 (568)
T ss_pred EEeCCCeEEEEECCCCcEEEEEe--cC---CcEEEEEECC-CCCEEEEEec-----------------CCEEEEEECCCC
Confidence 433344 8899998776432211 11 3478899999 5888775533 456888898876
Q ss_pred ceEE-eecCCCCccee-----EEecCCCEEEEEEcCC---CeEEEEEccC
Q 019290 192 NVTV-MYNGLSFPNGV-----ALSNNNSFLLLAESAT---LKILRFWLQG 232 (343)
Q Consensus 192 ~~~~-~~~~~~~~~~i-----~~~~d~~~lyv~~~~~---~~i~~~~~~~ 232 (343)
+... +.......... .++++++.+..+.... +.|..||+..
T Consensus 200 ~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 200 EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 5432 22111111111 1335666655544433 3699999763
No 112
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.74 E-value=0.0016 Score=59.22 Aligned_cols=157 Identities=20% Similarity=0.282 Sum_probs=88.1
Q ss_pred CeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeE-EEcccc--cCCCCccCcceeEEeC---CCCeEEEEeCCcccccccc
Q 019290 97 RPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQA-QQLASS--AGGIPFRFTNDLDIDP---NTGIVYFTDSSIYFQRRQY 170 (343)
Q Consensus 97 ~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~-~~~~~~--~~~~~~~~~~~i~~d~---~dg~l~v~~~~~~~~~~~~ 170 (343)
.|.+|++.+ ++++||+.....|++++.+ +.. ..+... ........+.++++++ .++.+|+.-.....
T Consensus 3 ~P~~~a~~p-dG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~----- 75 (331)
T PF07995_consen 3 NPRSMAFLP-DGRLLVAERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADE----- 75 (331)
T ss_dssp SEEEEEEET-TSCEEEEETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T-----
T ss_pred CceEEEEeC-CCcEEEEeCCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccC-----
Confidence 689999999 7999999764459999844 443 332221 1122235678999998 13789986542100
Q ss_pred eeeeeecCCCceEEEEeCCCC--c---eEEeec---C---CC-CcceeEEecCCCEEEEEEcC-------------CCeE
Q 019290 171 FMSIATGDRSGRLLKYDPLKK--N---VTVMYN---G---LS-FPNGVALSNNNSFLLLAESA-------------TLKI 225 (343)
Q Consensus 171 ~~~~~~~~~~~~v~~~d~~~~--~---~~~~~~---~---~~-~~~~i~~~~d~~~lyv~~~~-------------~~~i 225 (343)
.......+|.|+....+ . .+.+.. . .. ....++|.+|| .||++--. .+.|
T Consensus 76 ----~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~i 150 (331)
T PF07995_consen 76 ----DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKI 150 (331)
T ss_dssp ----SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEE
T ss_pred ----CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceE
Confidence 00001235666654322 1 122221 1 11 23568999998 78986321 5789
Q ss_pred EEEEccCcccc---------ccceeeec-CCCCCCceeeCCC-CCEEEEecc
Q 019290 226 LRFWLQGERTT---------YTPQLFAE-MPRFPDNIKSDSK-GEFWIAMNS 266 (343)
Q Consensus 226 ~~~~~~~~~~~---------~~~~~~~~-~~~~p~~i~~d~~-G~lwi~~~~ 266 (343)
.+++.++.... ...++++. +-+ |-++++|+. |+||++++.
T Consensus 151 lri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G 201 (331)
T PF07995_consen 151 LRIDPDGSIPADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNG 201 (331)
T ss_dssp EEEETTSSB-TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-
T ss_pred EEecccCcCCCCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccC
Confidence 99987763100 12234443 112 667899998 999999875
No 113
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.72 E-value=0.045 Score=51.65 Aligned_cols=120 Identities=12% Similarity=0.154 Sum_probs=63.1
Q ss_pred eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeeeeecCCCceEEE--EeCCC---C
Q 019290 118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSIATGDRSGRLLK--YDPLK---K 191 (343)
Q Consensus 118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~--~d~~~---~ 191 (343)
.|+.+++++++.+.+.... + .....++.| || .|.++.... + ...++. ++.++ +
T Consensus 212 ~I~~~~l~~g~~~~lt~~~-g----~~~~p~wSP-DG~~Laf~s~~~-------------g--~~di~~~~~~~~~g~~g 270 (428)
T PRK01029 212 KIFLGSLENPAGKKILALQ-G----NQLMPTFSP-RKKLLAFISDRY-------------G--NPDLFIQSFSLETGAIG 270 (428)
T ss_pred eEEEEECCCCCceEeecCC-C----CccceEECC-CCCEEEEEECCC-------------C--CcceeEEEeecccCCCC
Confidence 4999999988777664321 1 122457778 56 455543210 0 112443 34432 3
Q ss_pred ceEEeecCC-CCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCceeeCCCCCE
Q 019290 192 NVTVMYNGL-SFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEF 260 (343)
Q Consensus 192 ~~~~~~~~~-~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 260 (343)
+.+.+.... ......+++|||+.|+++...+ ..||++++++.. +..+.+....+.......++||+.
T Consensus 271 ~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 271 KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEEeccCCCCccceeECCCCCE
Confidence 444444322 2334568999999877765433 368888765321 122233222222334567888863
No 114
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.65 E-value=0.036 Score=49.18 Aligned_cols=234 Identities=15% Similarity=0.120 Sum_probs=124.9
Q ss_pred CCCceEEEcCCCCeeEEEecCCEEEEEEcCC-CCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290 35 VGPESLAFDCNGEGPYVGVSDGRILKWKAAN-SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA 113 (343)
Q Consensus 35 ~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~ 113 (343)
..-+-+.+-|.+.++.++..+|.++-|.... +..+.+.... .+ ...|- +.+++.++..+
T Consensus 149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~-----~~--------------ct~G~-f~pdGKr~~tg 208 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHN-----SP--------------CTCGE-FIPDGKRILTG 208 (399)
T ss_pred CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCC-----CC--------------ccccc-ccCCCceEEEE
Confidence 3567888899999888999999999998766 3344442100 00 11222 33436788888
Q ss_pred eCCCeEEEEeCCCCeEEEcccccCCCC-----ccCcceeEEeC-CCCeEEEEeCCcccccccceeeeeecCCCceEEEEe
Q 019290 114 DAYFGLMVVGPNGGQAQQLASSAGGIP-----FRFTNDLDIDP-NTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYD 187 (343)
Q Consensus 114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~-----~~~~~~i~~d~-~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 187 (343)
....-|..+|+++++........++.+ .+......++. .++..++.+.. .++|...+
T Consensus 209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~-----------------sgKVv~~~ 271 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNG-----------------SGKVVNCN 271 (399)
T ss_pred ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccc-----------------cceEEEec
Confidence 543348999999996543322222111 11111122221 12333332221 33333332
Q ss_pred CC-CCceEEeecC-CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCc---eeeCCCCCEEE
Q 019290 188 PL-KKNVTVMYNG-LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDN---IKSDSKGEFWI 262 (343)
Q Consensus 188 ~~-~~~~~~~~~~-~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~---i~~d~~G~lwi 262 (343)
.. ......-... ......+.++.+- -|..+..-.++|..||+.. .+.+.... ++++ +...+...|+.
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~vdG~i~iyD~a~----~~~R~~c~---he~~V~~l~w~~t~~l~t 343 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPSSSKL-PLAACGSVDGTIAIYDLAA----STLRHICE---HEDGVTKLKWLNTDYLLT 343 (399)
T ss_pred CCCCccccccchhhhhhhhhccccccc-chhhcccccceEEEEeccc----chhheecc---CCCceEEEEEcCcchhee
Confidence 11 1110000000 0111222232222 2555666789999999876 33344333 2334 34555667787
Q ss_pred EeccCCCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeE-EEeCCEEEEecCCCCeEEE
Q 019290 263 AMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEV-QEYGEYLYTGSSVQPYVVV 340 (343)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~-~~~~g~l~i~~~~~~~i~~ 340 (343)
++.+ +.|+.+|. .|+.+..+..... .+... ...++++.++....+...+
T Consensus 344 ~c~~-------------------------g~v~~wDaRtG~l~~~y~GH~~----~Il~f~ls~~~~~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 344 ACAN-------------------------GKVRQWDARTGQLKFTYTGHQM----GILDFALSPQKRLVVTVSDDNTALV 394 (399)
T ss_pred eccC-------------------------ceEEeeeccccceEEEEecCch----heeEEEEcCCCcEEEEecCCCeEEE
Confidence 7765 57888997 5888888875332 33333 3337888888888888777
Q ss_pred Ec
Q 019290 341 IK 342 (343)
Q Consensus 341 ~~ 342 (343)
++
T Consensus 395 F~ 396 (399)
T KOG0296|consen 395 FE 396 (399)
T ss_pred Ee
Confidence 64
No 115
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.65 E-value=0.0022 Score=58.52 Aligned_cols=182 Identities=12% Similarity=0.145 Sum_probs=113.1
Q ss_pred CceEEEcC-CCCeeEEEecCCEEEEEEcCC--CCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290 37 PESLAFDC-NGEGPYVGVSDGRILKWKAAN--SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA 113 (343)
Q Consensus 37 p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~ 113 (343)
..++.+.+ .+.++..+..++.|+.|+.-. +-+..|.. ....+..+.++.++..++-+
T Consensus 217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g--------------------H~k~Vrd~~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG--------------------HRKPVRDASFNNCGTSFLSA 276 (503)
T ss_pred cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc--------------------chhhhhhhhccccCCeeeee
Confidence 45666777 577666778899999988643 22323321 11123467777733345555
Q ss_pred eCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290 114 DAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN 192 (343)
Q Consensus 114 ~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 192 (343)
..++ |-.+|.+||+...-.... ..+..+.+.|.+.+++++..+ .++|..||..+++
T Consensus 277 -sfD~~lKlwDtETG~~~~~f~~~-----~~~~cvkf~pd~~n~fl~G~s-----------------d~ki~~wDiRs~k 333 (503)
T KOG0282|consen 277 -SFDRFLKLWDTETGQVLSRFHLD-----KVPTCVKFHPDNQNIFLVGGS-----------------DKKIRQWDIRSGK 333 (503)
T ss_pred -ecceeeeeeccccceEEEEEecC-----CCceeeecCCCCCcEEEEecC-----------------CCcEEEEeccchH
Confidence 4445 888999999876543322 346778888842277775443 6789999998777
Q ss_pred eE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC--CCCCCceeeCCCCCEEEEecc
Q 019290 193 VT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM--PRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 193 ~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~G~lwi~~~~ 266 (343)
+. .+...+...+.|.|-++++. +++.+..+.+.+|+...+-. ++.+... -..| .+...|.|..+++...
T Consensus 334 vvqeYd~hLg~i~~i~F~~~g~r-FissSDdks~riWe~~~~v~---ik~i~~~~~hsmP-~~~~~P~~~~~~aQs~ 405 (503)
T KOG0282|consen 334 VVQEYDRHLGAILDITFVDEGRR-FISSSDDKSVRIWENRIPVP---IKNIADPEMHTMP-CLTLHPNGKWFAAQSM 405 (503)
T ss_pred HHHHHHhhhhheeeeEEccCCce-EeeeccCccEEEEEcCCCcc---chhhcchhhccCc-ceecCCCCCeehhhcc
Confidence 53 34456677888989877764 66767788898888654211 1122111 1122 4667788877777665
No 116
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.62 E-value=0.02 Score=55.89 Aligned_cols=214 Identities=14% Similarity=0.103 Sum_probs=118.2
Q ss_pred CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC-------eEEEEeCCCCe
Q 019290 56 GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF-------GLMVVGPNGGQ 128 (343)
Q Consensus 56 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~-------gi~~~d~~~~~ 128 (343)
..+..||+.++.|...+..+ ......++++. +|.||+....+ .+.+||+.+.+
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~------------------~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMP------------------SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred ceeEEecCCcCcEeecCCCC------------------cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 45778999998888764321 11123567777 57899874433 38899999999
Q ss_pred EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEE
Q 019290 129 AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVAL 208 (343)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~ 208 (343)
+..++...... .-.+++.- +|.||+...... ...-..+.+||+.+.+++..........+.++
T Consensus 361 W~~~a~M~~~R---~~~~v~~l--~g~iYavGG~dg------------~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv 423 (571)
T KOG4441|consen 361 WTPVAPMNTKR---SDFGVAVL--DGKLYAVGGFDG------------EKSLNSVECYDPVTNKWTPVAPMLTRRSGHGV 423 (571)
T ss_pred eeccCCccCcc---ccceeEEE--CCEEEEEecccc------------ccccccEEEecCCCCcccccCCCCcceeeeEE
Confidence 88766554332 22344444 389998554310 01134699999998888765543333333333
Q ss_pred ecCCCEEEEEEcC------CCeEEEEEccCccccccceeeecCCCCC--CceeeCCCCCEEEEeccCCCccccccccccc
Q 019290 209 SNNNSFLLLAESA------TLKILRFWLQGERTTYTPQLFAEMPRFP--DNIKSDSKGEFWIAMNSARGKIESNKKTAFC 280 (343)
Q Consensus 209 ~~d~~~lyv~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~p--~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~ 280 (343)
..-++.+|+..-. -..+.+||+.+ ...+..+..+... .+++. -+|.||+.....+...
T Consensus 424 ~~~~g~iYi~GG~~~~~~~l~sve~YDP~t----~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~--------- 489 (571)
T KOG4441|consen 424 AVLGGKLYIIGGGDGSSNCLNSVECYDPET----NTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSA--------- 489 (571)
T ss_pred EEECCEEEEEcCcCCCccccceEEEEcCCC----CceeecCCcccccccceEEE-ECCEEEEECCccCCCc---------
Confidence 3334568886431 25677888765 3333333322111 22333 2578888765422111
Q ss_pred cccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEec
Q 019290 281 EETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGS 332 (343)
Q Consensus 281 ~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~ 332 (343)
...|-+|||..+.-..+..-.. ......+...++.||+.+
T Consensus 490 ----------~~~VE~ydp~~~~W~~v~~m~~--~rs~~g~~~~~~~ly~vG 529 (571)
T KOG4441|consen 490 ----------LSSVERYDPETNQWTMVAPMTS--PRSAVGVVVLGGKLYAVG 529 (571)
T ss_pred ----------cceEEEEcCCCCceeEcccCcc--ccccccEEEECCEEEEEe
Confidence 1358889997654444331111 122233344477787543
No 117
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.60 E-value=0.00044 Score=49.32 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=45.4
Q ss_pred eEEEcCC-CCeeEEEe-----------------cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeee
Q 019290 39 SLAFDCN-GEGPYVGV-----------------SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLG 100 (343)
Q Consensus 39 ~l~~d~~-g~~l~~~~-----------------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g 100 (343)
+++++++ |.++|+.. .+|+|++|||.+++.+.+. .....|+|
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~--------------------~~L~fpNG 61 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL--------------------DGLYFPNG 61 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE--------------------EEESSEEE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh--------------------hCCCccCe
Confidence 6888888 77555543 3589999999998877664 23457899
Q ss_pred EEEeCCCCeEEEEeCC-CeEEEEeCC
Q 019290 101 IKFNPVTCDLYIADAY-FGLMVVGPN 125 (343)
Q Consensus 101 i~~~~~~~~l~v~~~~-~gi~~~d~~ 125 (343)
+++++++..|+|+.+. ..|.++-++
T Consensus 62 Vals~d~~~vlv~Et~~~Ri~rywl~ 87 (89)
T PF03088_consen 62 VALSPDESFVLVAETGRYRILRYWLK 87 (89)
T ss_dssp EEE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred EEEcCCCCEEEEEeccCceEEEEEEe
Confidence 9999966678888654 348877654
No 118
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.59 E-value=0.01 Score=55.54 Aligned_cols=180 Identities=16% Similarity=0.230 Sum_probs=99.5
Q ss_pred cccccCCCCCCCceEEEcCCCCeeE-EEecCCEEEEEEcCCCCeE----------EeeecCCC----------ccccccC
Q 019290 26 YQQLQLPGVVGPESLAFDCNGEGPY-VGVSDGRILKWKAANSGWT----------EFATTAPH----------RAREICD 84 (343)
Q Consensus 26 ~~~~~~~~~~~p~~l~~d~~g~~l~-~~~~~g~i~~~d~~~~~~~----------~~~~~~~~----------~~~~~~~ 84 (343)
++.++.|. ....|-..+||..++ +++.-.+|-.||...-+++ .|..-..+ +.++...
T Consensus 45 iQdfe~p~--ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa 122 (703)
T KOG2321|consen 45 IQDFEMPT--ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA 122 (703)
T ss_pred HHhcCCcc--ccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence 45556665 356899999999666 4566677888877653321 11110100 0001100
Q ss_pred CCCCc--ccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCC
Q 019290 85 GSTNT--TLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS 162 (343)
Q Consensus 85 ~~~~~--~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~ 162 (343)
..+.+ .+.+.+ -..|+++.....||++..+..||++|+++|.+-.-..... ..+|.+.+.+.+|-|-+++
T Consensus 123 k~G~hy~~RIP~~--GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~----~~lN~v~in~~hgLla~Gt-- 194 (703)
T KOG2321|consen 123 KYGRHYRTRIPKF--GRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS----GELNVVSINEEHGLLACGT-- 194 (703)
T ss_pred hcCeeeeeecCcC--CccccccCCCccEEEeecCcceEEEEcccccccccccccc----ccceeeeecCccceEEecc--
Confidence 00000 111111 2457777656789988777789999999987543221111 2466677777533333322
Q ss_pred cccccccceeeeeecCCCceEEEEeCCCCceE-Eee-----------cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290 163 IYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT-VMY-----------NGLSFPNGVALSNNNSFLLLAESATLKILRFWL 230 (343)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~-----------~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~ 230 (343)
..+.|-.||+..+..- .+. .....+..+.|..+|-.+- ..+.+|.++.||+
T Consensus 195 ----------------~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~a-VGts~G~v~iyDL 257 (703)
T KOG2321|consen 195 ----------------EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVA-VGTSTGSVLIYDL 257 (703)
T ss_pred ----------------cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEE-eeccCCcEEEEEc
Confidence 2566778887655421 111 1122356777776654333 4567899999998
Q ss_pred cC
Q 019290 231 QG 232 (343)
Q Consensus 231 ~~ 232 (343)
..
T Consensus 258 Ra 259 (703)
T KOG2321|consen 258 RA 259 (703)
T ss_pred cc
Confidence 75
No 119
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.57 E-value=0.042 Score=52.78 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=26.1
Q ss_pred CeEEEECC-CCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCC
Q 019290 292 PVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQ 335 (343)
Q Consensus 292 ~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~ 335 (343)
+.++++|. +|+++-.+..+.......+. ...+|++||++...
T Consensus 416 G~l~ald~~tG~~lW~~~~~~~~~a~P~~--~~~~g~~yv~~~~g 458 (488)
T cd00216 416 GYFRAFDATTGKELWKFRTPSGIQATPMT--YEVNGKQYVGVMVG 458 (488)
T ss_pred CeEEEEECCCCceeeEEECCCCceEcCEE--EEeCCEEEEEEEec
Confidence 58899997 68887777654332111211 13378999887654
No 120
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.56 E-value=0.03 Score=53.49 Aligned_cols=174 Identities=13% Similarity=0.101 Sum_probs=104.6
Q ss_pred ccccccccCCCCCCCceEEEcCCCCeeEEEe-cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290 23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGV-SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI 101 (343)
Q Consensus 23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~-~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi 101 (343)
+..+-.+.+++-..-.+-++.|+|+.+.+++ ..-.||++.+.. ..++..- ............+
T Consensus 371 ~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~vk~~~v---------------~~~~~~~~~a~~i 434 (691)
T KOG2048|consen 371 YIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-NVKVINV---------------DDVPLALLDASAI 434 (691)
T ss_pred hhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-ceeEEEe---------------ccchhhhccceee
Confidence 5556667777666777888999999665544 566789888765 3333211 0001111122345
Q ss_pred EEeCCCCeEEEEe-CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCC
Q 019290 102 KFNPVTCDLYIAD-AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRS 180 (343)
Q Consensus 102 ~~~~~~~~l~v~~-~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~ 180 (343)
.+.-+++.++++. ....+..++.++...+.+........-..+..+++.+ +|.-.++-.. .
T Consensus 435 ~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t-----------------~ 496 (691)
T KOG2048|consen 435 SFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAIST-----------------R 496 (691)
T ss_pred EEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEec-----------------c
Confidence 5554344444443 3345788888777766664443333446788899999 4663332222 5
Q ss_pred ceEEEEeCCCCceEEeecCCCC-cceeEEe-cCCCEEEEEEcCCCeEEEEEcc
Q 019290 181 GRLLKYDPLKKNVTVMYNGLSF-PNGVALS-NNNSFLLLAESATLKILRFWLQ 231 (343)
Q Consensus 181 ~~v~~~d~~~~~~~~~~~~~~~-~~~i~~~-~d~~~lyv~~~~~~~i~~~~~~ 231 (343)
+.|+.|+.++++.+.+...+.. ....++. ++...|.++. .+++++-|++.
T Consensus 497 g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvat-s~nQv~efdi~ 548 (691)
T KOG2048|consen 497 GQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVAT-SNNQVFEFDIE 548 (691)
T ss_pred ceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEe-cCCeEEEEecc
Confidence 6799999998887766544432 3344555 3445566664 57899999984
No 121
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.55 E-value=0.019 Score=55.45 Aligned_cols=227 Identities=13% Similarity=0.100 Sum_probs=122.9
Q ss_pred ccCCCCCCCceEEEcC--CCCeeEEEe-cCCEEEEEEcCC---CCeEEeeecCCCccccccCCCCCcccCCC----cCCe
Q 019290 29 LQLPGVVGPESLAFDC--NGEGPYVGV-SDGRILKWKAAN---SGWTEFATTAPHRAREICDGSTNTTLEPL----CGRP 98 (343)
Q Consensus 29 ~~~~~~~~p~~l~~d~--~g~~l~~~~-~~g~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p 98 (343)
+.-....+|+--..|- ||+.+|+.. .+.|+-|++.+. .++.++++..... |.-..+.+.+ .+.-
T Consensus 122 ~~~gD~HHp~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~H------g~~~~~~p~t~yv~~~~e 195 (635)
T PRK02888 122 YLNGDTHHPHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIH------GLRPQKIPRTGYVFCNGE 195 (635)
T ss_pred ccCCCcCCCcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCcc------ccCccccCCccEEEeCcc
Confidence 4444666777666663 688777653 578898888755 3344433222111 1000000010 0011
Q ss_pred eeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccc-----cc----c
Q 019290 99 LGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYF-----QR----R 168 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~-----~~----~ 168 (343)
+.+-+.+++..++......+ +..+|.++-++..- ...+ ..+..+.+++.++.+|++...... .+ .
T Consensus 196 ~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~q--V~Vd---gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~ 270 (635)
T PRK02888 196 FRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQ--VMVD---GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER 270 (635)
T ss_pred cccccCCCCCEeecccceeEEEEEEECccceEEEE--EEeC---CCcccceECCCCCEEEEeccCcccCcceeeeccccC
Confidence 12223442334555433445 66788886544322 2111 246677888854567776421100 00 1
Q ss_pred cceee--e---eecC--------CCceEEEEeCCC-----CceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290 169 QYFMS--I---ATGD--------RSGRLLKYDPLK-----KNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWL 230 (343)
Q Consensus 169 ~~~~~--~---~~~~--------~~~~v~~~d~~~-----~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~ 230 (343)
++... + .+.. ..++|..+|..+ .++..+..-...|.|++++|||+++|+++.....+.++|.
T Consensus 271 d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 271 DWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred ceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 11000 0 0000 134588888876 3455556667789999999999999999999999999998
Q ss_pred cCcc-----ccc-cceeeec--CCCCCCceeeCCCCCEEEEecc
Q 019290 231 QGER-----TTY-TPQLFAE--MPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 231 ~~~~-----~~~-~~~~~~~--~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
..-. ++. +-.+..+ +..-|-..++|.+|+.|++..-
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~ 394 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFL 394 (635)
T ss_pred hhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEee
Confidence 6421 000 0112222 2223777889999999988765
No 122
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.54 E-value=0.02 Score=55.91 Aligned_cols=191 Identities=14% Similarity=0.122 Sum_probs=109.5
Q ss_pred CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC------eEEEEeCCCCeE
Q 019290 56 GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF------GLMVVGPNGGQA 129 (343)
Q Consensus 56 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~------gi~~~d~~~~~~ 129 (343)
..+++||+.+.+|..++.-. ....-.+++.. +|.||+....+ .+-+||+++.++
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~------------------~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMN------------------TKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred ceEEEecCCCCceeccCCcc------------------CccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcc
Confidence 35889999998898764211 11123466666 68888874322 388999999998
Q ss_pred EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC--cceeE
Q 019290 130 QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF--PNGVA 207 (343)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~i~ 207 (343)
+..+..... ..-.++++- +|.||+....... ...-..+.+|||.+++++.+..-... -.+++
T Consensus 409 ~~va~m~~~---r~~~gv~~~--~g~iYi~GG~~~~-----------~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a 472 (571)
T KOG4441|consen 409 TPVAPMLTR---RSGHGVAVL--GGKLYIIGGGDGS-----------SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA 472 (571)
T ss_pred cccCCCCcc---eeeeEEEEE--CCEEEEEcCcCCC-----------ccccceEEEEcCCCCceeecCCcccccccceEE
Confidence 887655432 222344444 3899996542100 00125699999999988765433222 23444
Q ss_pred EecCCCEEEEEEcCC-----CeEEEEEccCccccccceeeecCC--CCCCceeeCCCCCEEEEeccCCCccccccccccc
Q 019290 208 LSNNNSFLLLAESAT-----LKILRFWLQGERTTYTPQLFAEMP--RFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFC 280 (343)
Q Consensus 208 ~~~d~~~lyv~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~--~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~ 280 (343)
.. ++.||+..-.. .++.+||+.. .....+.... ...-+++.. +|.+|+.....+...
T Consensus 473 ~~--~~~iYvvGG~~~~~~~~~VE~ydp~~----~~W~~v~~m~~~rs~~g~~~~-~~~ly~vGG~~~~~~--------- 536 (571)
T KOG4441|consen 473 VL--NGKIYVVGGFDGTSALSSVERYDPET----NQWTMVAPMTSPRSAVGVVVL-GGKLYAVGGFDGNNN--------- 536 (571)
T ss_pred EE--CCEEEEECCccCCCccceEEEEcCCC----CceeEcccCccccccccEEEE-CCEEEEEecccCccc---------
Confidence 43 34688864322 3478888765 3333333221 112233433 577887755434433
Q ss_pred cccCCCcccCCCeEEEECCC-CCEEEEee
Q 019290 281 EETAKPWFLRDPVGVKFDVN-GNVVDVLD 308 (343)
Q Consensus 281 ~~~~~~~~~~~~~v~~~d~~-g~~~~~~~ 308 (343)
...|-++||. ++......
T Consensus 537 ----------l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 537 ----------LNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ----------cceeEEcCCCCCceeeCCC
Confidence 3588889985 44444433
No 123
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.54 E-value=0.0042 Score=52.30 Aligned_cols=180 Identities=9% Similarity=0.063 Sum_probs=103.3
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCe--EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGW--TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
...++++.|-+.+.++...--+..||.+..+. .+| ....+.+..+.+..+++.++-+.
T Consensus 103 vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~--------------------~ghtg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI--------------------SGHTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred eeeEEecccchhhhccchHHHhhhhhccCCCCCchhh--------------------cCCCCcceeEEEeccCceEEeec
Confidence 45677777766566655444344455544221 111 11223344555555577777763
Q ss_pred CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290 115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT 194 (343)
Q Consensus 115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 194 (343)
....|+.+|..+++...-.... ..++++-+.+ ||++..... ...|-.+|+++-.+.
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~-----s~VtSlEvs~-dG~ilTia~------------------gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFN-----SPVTSLEVSQ-DGRILTIAY------------------GSSVKFWDAKSFGLL 218 (334)
T ss_pred cCCceEEEEeccCcEEEEEecC-----CCCcceeecc-CCCEEEEec------------------CceeEEeccccccce
Confidence 3455999999988754432322 3477888888 588765443 235777887543321
Q ss_pred EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCC---CceeeCCCCCEEEEecc
Q 019290 195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFP---DNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p---~~i~~d~~G~lwi~~~~ 266 (343)
.-..-.-..+..-++|+. ..||+.-....+++||.++... +..+ ..+++ ..+.+.|+|.+|.....
T Consensus 219 Ks~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeE---i~~~--nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 219 KSYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEE---IGSY--NKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred eeccCccccccccccCCC-ceEEecCcceEEEEEeccCCce---eeec--ccCCCCceEEEEECCCCceeeccCC
Confidence 111111223445567776 5788887889999999886432 2222 22222 33567888888887665
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.083 Score=52.34 Aligned_cols=152 Identities=16% Similarity=0.113 Sum_probs=88.5
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCC-CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANS-GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
-..|++|++|+.+++...+|-|..++.... +-. +......-.+.+++.. .+.+..+..
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-------------------~ti~~~g~~v~~ia~~--s~~f~~~s~ 74 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-------------------ETIDISGELVSSIACY--SNHFLTGSE 74 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-------------------chhhccCceeEEEeec--ccceEEeec
Confidence 568999999998888878888888875442 100 0000011123345555 345555544
Q ss_pred CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc-eE
Q 019290 116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN-VT 194 (343)
Q Consensus 116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~ 194 (343)
.+-|.+|....++...+.... ...++.++++. +|...++.+. .-.|-.++..+.. ..
T Consensus 75 ~~tv~~y~fps~~~~~iL~Rf----tlp~r~~~v~g-~g~~iaagsd-----------------D~~vK~~~~~D~s~~~ 132 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILARF----TLPIRDLAVSG-SGKMIAAGSD-----------------DTAVKLLNLDDSSQEK 132 (933)
T ss_pred cceEEEeeCCCCCccceeeee----eccceEEEEec-CCcEEEeecC-----------------ceeEEEEeccccchhe
Confidence 455888877666544322111 12367889998 5776665443 2224444443222 22
Q ss_pred EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.+...-...-.+.++|+++.|-++ +.+|.|.+|+++.
T Consensus 133 ~lrgh~apVl~l~~~p~~~fLAvs-s~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 133 VLRGHDAPVLQLSYDPKGNFLAVS-SCDGKVQIWDLQD 169 (933)
T ss_pred eecccCCceeeeeEcCCCCEEEEE-ecCceEEEEEccc
Confidence 333222345678899999876655 4689999999875
No 125
>PTZ00421 coronin; Provisional
Probab=97.53 E-value=0.093 Score=50.31 Aligned_cols=159 Identities=11% Similarity=0.049 Sum_probs=91.2
Q ss_pred CceEEEcCCC-CeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 37 PESLAFDCNG-EGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 37 p~~l~~d~~g-~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
..++++.+++ +++.++..++.|..||..+++..... ........++++++ ++.++++..
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l-------------------~~h~~~V~sla~sp-dG~lLatgs 187 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI-------------------KCHSDQITSLEWNL-DGSLLCTTS 187 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE-------------------cCCCCceEEEEEEC-CCCEEEEec
Confidence 5678899875 56778888999999998875432211 01122467899998 666555444
Q ss_pred CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc--
Q 019290 116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN-- 192 (343)
Q Consensus 116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-- 192 (343)
.++ |..+|+++++...-.....+ .....+...+. +...++.... ....+.|..||.....
T Consensus 188 ~Dg~IrIwD~rsg~~v~tl~~H~~---~~~~~~~w~~~-~~~ivt~G~s-------------~s~Dr~VklWDlr~~~~p 250 (493)
T PTZ00421 188 KDKKLNIIDPRDGTIVSSVEAHAS---AKSQRCLWAKR-KDLIITLGCS-------------KSQQRQIMLWDTRKMASP 250 (493)
T ss_pred CCCEEEEEECCCCcEEEEEecCCC---CcceEEEEcCC-CCeEEEEecC-------------CCCCCeEEEEeCCCCCCc
Confidence 555 88999988764322111111 11233445553 4444433210 0113457777865322
Q ss_pred eEEeecCC-CCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 193 VTVMYNGL-SFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 193 ~~~~~~~~-~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
......+. .......+++++..+|++...++.|..|++..
T Consensus 251 ~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 251 YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 11111111 12233457788988888776688999999875
No 126
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.50 E-value=0.034 Score=46.31 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=69.6
Q ss_pred CeeeEEEeCCCCeEEEEeC--CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeee
Q 019290 97 RPLGIKFNPVTCDLYIADA--YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI 174 (343)
Q Consensus 97 ~p~gi~~~~~~~~l~v~~~--~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~ 174 (343)
.+..++..|.+..+.+... ...+..+|.+...+..+. ....|.+...| +|++.+....
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-------~~~~n~i~wsP-~G~~l~~~g~------------ 120 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-------TQPRNTISWSP-DGRFLVLAGF------------ 120 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-------CCCceEEEECC-CCCEEEEEEc------------
Confidence 3678999985556655532 234888888744443331 13467899999 4876664321
Q ss_pred eecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcC-----CCeEEEEEccC
Q 019290 175 ATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESA-----TLKILRFWLQG 232 (343)
Q Consensus 175 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~-----~~~i~~~~~~~ 232 (343)
++..|.|..+|.+..+..... .......++++|||+++..+.+. ++++..|+..|
T Consensus 121 --~n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 121 --GNLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred --cCCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 122466888998744432211 22346788999999987766543 45666666665
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.021 Score=52.13 Aligned_cols=196 Identities=15% Similarity=0.135 Sum_probs=104.9
Q ss_pred CCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCcccccccceeee
Q 019290 96 GRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSI 174 (343)
Q Consensus 96 ~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~ 174 (343)
+.+..+.|++...-|.++.....+..|..+ |++.+..+...-.. .-+....+.++ |. ..++...
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvD-Gk~N~~lqS~~l~~-fPi~~a~f~p~-G~~~i~~s~r------------ 278 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVD-GKVNPKLQSIHLEK-FPIQKAEFAPN-GHSVIFTSGR------------ 278 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEec-CccChhheeeeecc-CccceeeecCC-CceEEEeccc------------
Confidence 356789999844456666433334444333 33333322211101 12345566674 65 4443322
Q ss_pred eecCCCceEEEEeCCCCceEEeecCC----CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCC
Q 019290 175 ATGDRSGRLLKYDPLKKNVTVMYNGL----SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPD 250 (343)
Q Consensus 175 ~~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~ 250 (343)
..-+|.||..+.++..+.... .......+++++.++.+.. ..+-|+.+...+...++.+ +.+|...
T Consensus 279 -----rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G-~~G~I~lLhakT~eli~s~----KieG~v~ 348 (514)
T KOG2055|consen 279 -----RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG-NNGHIHLLHAKTKELITSF----KIEGVVS 348 (514)
T ss_pred -----ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc-cCceEEeehhhhhhhhhee----eeccEEe
Confidence 345888999887776543211 1234567888998766554 4677877765442221222 2455566
Q ss_pred ceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCC-CEEEEeeCCCCCccCCceeEEEeCCEEE
Q 019290 251 NIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNG-NVVDVLDGNEGNTLNSVSEVQEYGEYLY 329 (343)
Q Consensus 251 ~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 329 (343)
++++++||+..+++.. ++.|+.+|-+. ..+..+.+ +| ....-+.+..-++.++
T Consensus 349 ~~~fsSdsk~l~~~~~------------------------~GeV~v~nl~~~~~~~rf~D-~G-~v~gts~~~S~ng~yl 402 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGG------------------------TGEVYVWNLRQNSCLHRFVD-DG-SVHGTSLCISLNGSYL 402 (514)
T ss_pred eEEEecCCcEEEEEcC------------------------CceEEEEecCCcceEEEEee-cC-ccceeeeeecCCCceE
Confidence 7888899854444444 35788888654 34444543 33 2333344433466655
Q ss_pred EecCCCCeEEEEc
Q 019290 330 TGSSVQPYVVVIK 342 (343)
Q Consensus 330 i~~~~~~~i~~~~ 342 (343)
-++..+.-|=.|+
T Consensus 403 A~GS~~GiVNIYd 415 (514)
T KOG2055|consen 403 ATGSDSGIVNIYD 415 (514)
T ss_pred EeccCcceEEEec
Confidence 5555555555554
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.45 E-value=0.12 Score=49.56 Aligned_cols=194 Identities=15% Similarity=0.043 Sum_probs=110.5
Q ss_pred ccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290 27 QQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV 106 (343)
Q Consensus 27 ~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~ 106 (343)
..++.|...+-|+||+.+.|+ ||....+|.|..||+.+.+...- .....+....|+++++
T Consensus 62 ~vi~g~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~~-------------------~d~~gg~IWsiai~p~ 121 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKYN-------------------IDSNGGAIWSIAINPE 121 (691)
T ss_pred EEEecCCCCceeeEEEccCCe-EEeecCCceEEEEecccCceeEE-------------------ecCCCcceeEEEeCCc
Confidence 334455556789999997777 99888999999999987543321 1233445688999996
Q ss_pred CCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290 107 TCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK 185 (343)
Q Consensus 107 ~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 185 (343)
+..+-|+ ..+| ++.++...++++.-.... .....+-++..++ ++.-.++... .+.|-.
T Consensus 122 ~~~l~Ig-cddGvl~~~s~~p~~I~~~r~l~--rq~sRvLslsw~~-~~~~i~~Gs~-----------------Dg~Iri 180 (691)
T KOG2048|consen 122 NTILAIG-CDDGVLYDFSIGPDKITYKRSLM--RQKSRVLSLSWNP-TGTKIAGGSI-----------------DGVIRI 180 (691)
T ss_pred cceEEee-cCCceEEEEecCCceEEEEeecc--cccceEEEEEecC-CccEEEeccc-----------------CceEEE
Confidence 6778888 4566 555566656555332111 1124577888888 4763443222 345666
Q ss_pred EeCCCCceEEe----ecCCCC-----cceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCC
Q 019290 186 YDPLKKNVTVM----YNGLSF-----PNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDS 256 (343)
Q Consensus 186 ~d~~~~~~~~~----~~~~~~-----~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 256 (343)
+|...+..-.+ ...+.. ..++.+-.++ ..++....|.|-.||......+...+ -.......++++.
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl~Lav~~ 255 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHS---CHDADVLALAVAD 255 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhh---hhhcceeEEEEcC
Confidence 77665443221 112222 2344444555 34555567899999865321111111 1222244566766
Q ss_pred CC-CEEEEecc
Q 019290 257 KG-EFWIAMNS 266 (343)
Q Consensus 257 ~G-~lwi~~~~ 266 (343)
++ +++++.-.
T Consensus 256 ~~d~vfsaGvd 266 (691)
T KOG2048|consen 256 NEDRVFSAGVD 266 (691)
T ss_pred CCCeEEEccCC
Confidence 64 55555443
No 129
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.42 E-value=0.02 Score=53.10 Aligned_cols=205 Identities=15% Similarity=0.126 Sum_probs=113.9
Q ss_pred cccCC-CCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCC--eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEe
Q 019290 28 QLQLP-GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSG--WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFN 104 (343)
Q Consensus 28 ~~~~~-~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~ 104 (343)
++.++ +-.....+++|+.|-+++++.-+..+..||.++-. +..|. ... +...-..+.+.+.
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr------~l~----------P~E~h~i~sl~ys 223 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFR------QLQ----------PCETHQINSLQYS 223 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhh------ccC----------cccccccceeeec
Confidence 34444 32347789999999999999999999999987622 22221 001 1223345678888
Q ss_pred CCCCeEEEEeCCCeEEEEeCCCCeEEEccccc-------CC-CCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290 105 PVTCDLYIADAYFGLMVVGPNGGQAQQLASSA-------GG-IPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 105 ~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~-------~~-~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
+-++.|++.....-...+|.++-++..+.... .. .....++...+.|.....+++...
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~-------------- 289 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY-------------- 289 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC--------------
Confidence 85667777754444777888765554443211 10 112234445555532345554432
Q ss_pred cCCCceEEEEeCCCCceEEeec----CCC-CcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec---CCC-
Q 019290 177 GDRSGRLLKYDPLKKNVTVMYN----GLS-FPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE---MPR- 247 (343)
Q Consensus 177 ~~~~~~v~~~d~~~~~~~~~~~----~~~-~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~- 247 (343)
.+.-+||-++....+..++.. +.. .+..-++++|+. ++.+...+|.|-.|+..+ .. .+...... .++
T Consensus 290 -DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~-~~-v~p~~~vk~AH~~g~ 365 (641)
T KOG0772|consen 290 -DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGS-RT-VRPVMKVKDAHLPGQ 365 (641)
T ss_pred -CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCC-cc-cccceEeeeccCCCC
Confidence 113345544432223333322 111 244556888887 577778899999999733 22 22222221 221
Q ss_pred CCCceeeCCCCCEEEEecc
Q 019290 248 FPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 248 ~p~~i~~d~~G~lwi~~~~ 266 (343)
....+.++.+|+++.+-..
T Consensus 366 ~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 366 DITSISFSYDGNYLLSRGF 384 (641)
T ss_pred ceeEEEeccccchhhhccC
Confidence 2455788999988877544
No 130
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.41 E-value=0.097 Score=47.64 Aligned_cols=144 Identities=13% Similarity=0.140 Sum_probs=82.6
Q ss_pred eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290 98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
+.++..++ .|..+++....+ ....|.++|..-..... + ........++++| ||.|+.+-..
T Consensus 306 V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-~-~s~v~~ts~~fHp-DgLifgtgt~-------------- 367 (506)
T KOG0289|consen 306 VTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSD-E-TSDVEYTSAAFHP-DGLIFGTGTP-------------- 367 (506)
T ss_pred ceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEee-c-cccceeEEeeEcC-CceEEeccCC--------------
Confidence 56788888 555444434556 44456666643322111 1 1123467889999 6888774432
Q ss_pred cCCCceEEEEeCCCCc-eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCC-CCCceee
Q 019290 177 GDRSGRLLKYDPLKKN-VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPR-FPDNIKS 254 (343)
Q Consensus 177 ~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~p~~i~~ 254 (343)
.+.|-.||...+. ...+...-.....|.|+.+|- ..++...++.|..||+... .+++.+..... ....+.+
T Consensus 368 ---d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLRKl---~n~kt~~l~~~~~v~s~~f 440 (506)
T KOG0289|consen 368 ---DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLRKL---KNFKTIQLDEKKEVNSLSF 440 (506)
T ss_pred ---CceEEEEEcCCccccccCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEehhh---cccceeeccccccceeEEE
Confidence 4556667765443 222222233457788987774 4445566777999998542 34444432111 2455789
Q ss_pred CCCCCEEEEecc
Q 019290 255 DSKGEFWIAMNS 266 (343)
Q Consensus 255 d~~G~lwi~~~~ 266 (343)
|..|.+.+....
T Consensus 441 D~SGt~L~~~g~ 452 (506)
T KOG0289|consen 441 DQSGTYLGIAGS 452 (506)
T ss_pred cCCCCeEEeecc
Confidence 999977766533
No 131
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.38 E-value=0.095 Score=47.70 Aligned_cols=102 Identities=11% Similarity=0.063 Sum_probs=56.5
Q ss_pred CcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCC---CCcceeEEecCCCEEEEEE
Q 019290 143 FTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGL---SFPNGVALSNNNSFLLLAE 219 (343)
Q Consensus 143 ~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~i~~~~d~~~lyv~~ 219 (343)
.++++...+. |..+++.+. .+.....|..++..-....+- ......+|+|||- ++.+.
T Consensus 305 ~V~~ls~h~t-geYllsAs~-----------------d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtg 365 (506)
T KOG0289|consen 305 PVTGLSLHPT-GEYLLSASN-----------------DGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTG 365 (506)
T ss_pred cceeeeeccC-CcEEEEecC-----------------CceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEecc
Confidence 3677788884 665554433 222333344444433222221 2246788999984 77788
Q ss_pred cCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290 220 SATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 220 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
+.++.|-.|++..+.. ...|..-.+-...+.+..+|...++..+
T Consensus 366 t~d~~vkiwdlks~~~---~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTN---VAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred CCCceEEEEEcCCccc---cccCCCCCCceeEEEeccCceEEEEEec
Confidence 8889999999875322 1222222222445778888844444333
No 132
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.34 E-value=0.035 Score=50.12 Aligned_cols=186 Identities=15% Similarity=0.075 Sum_probs=106.8
Q ss_pred CCceEEEcCCCCeeEEEecCC--EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290 36 GPESLAFDCNGEGPYVGVSDG--RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA 113 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~ 113 (343)
...-+.++++|+.+-+++.+- .|+...+++. ++.. ++.......+..|.++|+++.|.-+
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~-----------------~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLK-----------------KTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeee-----------------eeeecccCceEEEEECCCCCeEEec
Confidence 466788888888444444332 4555555543 3322 1112222334568889844444433
Q ss_pred eCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290 114 DAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV 193 (343)
Q Consensus 114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 193 (343)
....-+..+|.++|.......... ...+.+.+.-| ||.-+++.+. ...++.+|.++...
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~~---~~S~~sc~W~p-Dg~~~V~Gs~-----------------dr~i~~wdlDgn~~ 346 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSGL---GFSVSSCAWCP-DGFRFVTGSP-----------------DRTIIMWDLDGNIL 346 (519)
T ss_pred CchHheeeccCCcchhhhhcccCc---CCCcceeEEcc-CCceeEecCC-----------------CCcEEEecCCcchh
Confidence 222338888998887554432221 24566778888 5777775443 56788888874332
Q ss_pred EEeecCC--CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290 194 TVMYNGL--SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 194 ~~~~~~~--~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
. -..+. .....+++++||+.++... ....|..|+.... .....+ ........+.++.+|++.+....
T Consensus 347 ~-~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~---~dr~li-se~~~its~~iS~d~k~~LvnL~ 415 (519)
T KOG0293|consen 347 G-NWEGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREAR---VDRGLI-SEEQPITSFSISKDGKLALVNLQ 415 (519)
T ss_pred h-cccccccceeEEEEEcCCCcEEEEEe-cccceeeechhhh---hhhccc-cccCceeEEEEcCCCcEEEEEcc
Confidence 2 12222 3357889999999888775 4677888875431 111122 12222445778889988887665
No 133
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.33 E-value=0.032 Score=47.19 Aligned_cols=149 Identities=7% Similarity=0.013 Sum_probs=94.7
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC
Q 019290 38 ESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF 117 (343)
Q Consensus 38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~ 117 (343)
..+.+-...+.+..++.++.|..||-.++...+-. .....+.++-++. +|++.....+.
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL--------------------~~~s~VtSlEvs~-dG~ilTia~gs 205 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL--------------------EFNSPVTSLEVSQ-DGRILTIAYGS 205 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCcEEEEE--------------------ecCCCCcceeecc-CCCEEEEecCc
Confidence 34445444444666678888999998776433211 1112345677776 67766665677
Q ss_pred eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEe-
Q 019290 118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVM- 196 (343)
Q Consensus 118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~- 196 (343)
+|-.+|.++=..-.-... | -.+.+....|+ ..+||+... ...+++||-.+++-...
T Consensus 206 sV~Fwdaksf~~lKs~k~----P-~nV~SASL~P~-k~~fVaGge-----------------d~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYKM----P-CNVESASLHPK-KEFFVAGGE-----------------DFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred eeEEeccccccceeeccC----c-cccccccccCC-CceEEecCc-----------------ceEEEEEeccCCceeeec
Confidence 788888875222111111 1 23566677884 688884432 45799999888765433
Q ss_pred -ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290 197 -YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ 231 (343)
Q Consensus 197 -~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~ 231 (343)
.......-.+.|+|||+ +|.+.+.++.|..|...
T Consensus 263 nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 263 NKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTT 297 (334)
T ss_pred ccCCCCceEEEEECCCCc-eeeccCCCceEEEEEec
Confidence 23344567888999997 89999999999888754
No 134
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.32 E-value=0.076 Score=44.62 Aligned_cols=178 Identities=11% Similarity=0.101 Sum_probs=102.3
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
...+-+..+|+...+...+..+-.|+|-.+. ++.+. .........+... ++.=+.+..
T Consensus 20 V~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs--------------------ghG~EVlD~~~s~-Dnskf~s~G 78 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS--------------------GHGHEVLDAALSS-DNSKFASCG 78 (307)
T ss_pred eEEEEEccCCCEEEEcCCCceEEeecccccceeeeec--------------------CCCceeeeccccc-cccccccCC
Confidence 4556677899933345566677788886543 33332 1122334444444 444444322
Q ss_pred CC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290 116 YF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT 194 (343)
Q Consensus 116 ~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 194 (343)
++ -++.+|.++|++-+-..... ..+|.+.+.. +..+.++.+- ...+-.||=.+...+
T Consensus 79 gDk~v~vwDV~TGkv~Rr~rgH~----aqVNtV~fNe-esSVv~Sgsf-----------------D~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKVDRRFRGHL----AQVNTVRFNE-ESSVVASGSF-----------------DSSVRLWDCRSRSFE 136 (307)
T ss_pred CCceEEEEEcccCeeeeeccccc----ceeeEEEecC-cceEEEeccc-----------------cceeEEEEcccCCCC
Confidence 33 39999999999766544332 3578888887 4777775432 234555665444443
Q ss_pred Ee--e-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCC-CceeeCCCCCEEEEecc
Q 019290 195 VM--Y-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFP-DNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 195 ~~--~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d~~G~lwi~~~~ 266 (343)
.+ . ........+.+. ++.+++.+.++++.+|++.- ++ .....-+.| ..+.+.++|+.-++..-
T Consensus 137 PiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~----G~--l~sDy~g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 137 PIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRK----GT--LSSDYFGHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred ccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeec----ce--eehhhcCCcceeEEecCCCCEEEEeec
Confidence 32 1 222334455553 35678888999999999763 11 111212223 45778899987666543
No 135
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.32 E-value=0.11 Score=46.34 Aligned_cols=200 Identities=17% Similarity=0.229 Sum_probs=93.3
Q ss_pred CccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290 22 SSKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI 101 (343)
Q Consensus 22 ~~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi 101 (343)
+....+++.+|.-....+|.+..+.+ -|+--..+.|++-..-+..|......... .....-..+
T Consensus 4 ~~~~W~~v~l~t~~~l~dV~F~d~~~-G~~VG~~g~il~T~DGG~tW~~~~~~~~~---------------~~~~~l~~I 67 (302)
T PF14870_consen 4 SGNSWQQVSLPTDKPLLDVAFVDPNH-GWAVGAYGTILKTTDGGKTWQPVSLDLDN---------------PFDYHLNSI 67 (302)
T ss_dssp SS--EEEEE-S-SS-EEEEEESSSS--EEEEETTTEEEEESSTTSS-EE-----S--------------------EEEEE
T ss_pred cCCCcEEeecCCCCceEEEEEecCCE-EEEEecCCEEEEECCCCccccccccCCCc---------------cceeeEEEE
Confidence 34557788888555788999996666 55444567788876666677765321100 001122456
Q ss_pred EEeCCCCeEEEEeCCCeEEEEeCCCC-eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCC
Q 019290 102 KFNPVTCDLYIADAYFGLMVVGPNGG-QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRS 180 (343)
Q Consensus 102 ~~~~~~~~l~v~~~~~gi~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~ 180 (343)
.+.. +..|++. ..|+.....+.| .++.+.. ....+ ..+..+.... ++..+++.. .
T Consensus 68 ~f~~--~~g~ivG-~~g~ll~T~DgG~tW~~v~l-~~~lp-gs~~~i~~l~-~~~~~l~~~------------------~ 123 (302)
T PF14870_consen 68 SFDG--NEGWIVG-EPGLLLHTTDGGKTWERVPL-SSKLP-GSPFGITALG-DGSAELAGD------------------R 123 (302)
T ss_dssp EEET--TEEEEEE-ETTEEEEESSTTSS-EE-----TT-S-S-EEEEEEEE-TTEEEEEET------------------T
T ss_pred EecC--CceEEEc-CCceEEEecCCCCCcEEeec-CCCCC-CCeeEEEEcC-CCcEEEEcC------------------C
Confidence 6664 5677774 456555555544 4555421 11111 1234444444 266666432 3
Q ss_pred ceEEEEeCCCCceEEeecCC-CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCC
Q 019290 181 GRLLKYDPLKKNVTVMYNGL-SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKG 258 (343)
Q Consensus 181 ~~v~~~d~~~~~~~~~~~~~-~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G 258 (343)
+.||+-.-.+...+.+.... ...+.+...+||+++.++ ..+.++.-.-.+. ........ .......|.++++|
T Consensus 124 G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs--~~G~~~~s~~~G~---~~w~~~~r~~~~riq~~gf~~~~ 198 (302)
T PF14870_consen 124 GAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVS--SRGNFYSSWDPGQ---TTWQPHNRNSSRRIQSMGFSPDG 198 (302)
T ss_dssp --EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEE--TTSSEEEEE-TT----SS-EEEE--SSS-EEEEEE-TTS
T ss_pred CcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEE--CcccEEEEecCCC---ccceEEccCccceehhceecCCC
Confidence 56887754444555544332 334566667888754443 4566665332231 12222222 23345678889999
Q ss_pred CEEEEecc
Q 019290 259 EFWIAMNS 266 (343)
Q Consensus 259 ~lwi~~~~ 266 (343)
+||+.+..
T Consensus 199 ~lw~~~~G 206 (302)
T PF14870_consen 199 NLWMLARG 206 (302)
T ss_dssp -EEEEETT
T ss_pred CEEEEeCC
Confidence 99999865
No 136
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.30 E-value=0.032 Score=50.41 Aligned_cols=227 Identities=15% Similarity=0.135 Sum_probs=129.0
Q ss_pred CceEEEcCC--CCeeEEEecCCEEEEEEcCCC-CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290 37 PESLAFDCN--GEGPYVGVSDGRILKWKAANS-GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA 113 (343)
Q Consensus 37 p~~l~~d~~--g~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~ 113 (343)
.-++.+.|. +.-+-++..+|.+..|+.++. .+..+ +....++.-++|+| .|..+.+
T Consensus 220 v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l--------------------~gH~~RVs~VafHP-sG~~L~T 278 (459)
T KOG0272|consen 220 VGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL--------------------EGHLARVSRVAFHP-SGKFLGT 278 (459)
T ss_pred eeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh--------------------hcchhhheeeeecC-CCceeee
Confidence 556777765 434667777887777776552 22222 12234556788999 5655544
Q ss_pred eCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290 114 DAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN 192 (343)
Q Consensus 114 ~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 192 (343)
...+. =..+|.+++.- .+.+.... ..+.++++.+ ||.+..+.... ..++|| |..+|+
T Consensus 279 asfD~tWRlWD~~tk~E-lL~QEGHs---~~v~~iaf~~-DGSL~~tGGlD---------------~~~RvW--DlRtgr 336 (459)
T KOG0272|consen 279 ASFDSTWRLWDLETKSE-LLLQEGHS---KGVFSIAFQP-DGSLAATGGLD---------------SLGRVW--DLRTGR 336 (459)
T ss_pred cccccchhhcccccchh-hHhhcccc---cccceeEecC-CCceeeccCcc---------------chhhee--ecccCc
Confidence 34443 44567776532 22222222 4588999999 69988754321 134454 666676
Q ss_pred eEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCC-CCCEEEEeccCCCc
Q 019290 193 VTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDS-KGEFWIAMNSARGK 270 (343)
Q Consensus 193 ~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~lwi~~~~~~~~ 270 (343)
...+. .......+++|+|+|- ...+.+.++...+||+.... +.-+++.-.++...++.++ .|++.+++..
T Consensus 337 ~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~---~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy---- 408 (459)
T KOG0272|consen 337 CIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRS---ELYTIPAHSNLVSQVKYSPQEGYFLVTASY---- 408 (459)
T ss_pred EEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeecccc---cceecccccchhhheEecccCCeEEEEccc----
Confidence 65544 3445678999999885 56677788899999986421 1111111222455677887 5666666554
Q ss_pred cccccccccccccCCCcccCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEE-eCCEEEEecCCCCeE
Q 019290 271 IESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQE-YGEYLYTGSSVQPYV 338 (343)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~i~~~~~~~i 338 (343)
.+.+-..+. ++..+..+...++ .+.++.. .++...+++..-+++
T Consensus 409 --------------------D~t~kiWs~~~~~~~ksLaGHe~----kV~s~Dis~d~~~i~t~s~DRT~ 454 (459)
T KOG0272|consen 409 --------------------DNTVKIWSTRTWSPLKSLAGHEG----KVISLDISPDSQAIATSSFDRTI 454 (459)
T ss_pred --------------------CcceeeecCCCcccchhhcCCcc----ceEEEEeccCCceEEEeccCcee
Confidence 224444444 4566666654444 2333332 355555555555544
No 137
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.30 E-value=0.078 Score=48.78 Aligned_cols=155 Identities=15% Similarity=0.087 Sum_probs=93.5
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
...++.+-.||.++-++...|-+-.||.++.... ..........+-+.|.++++.+++...
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL-------------------R~~~ah~apv~~~~f~~~d~t~l~s~s 130 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL-------------------RQLYAHQAPVHVTKFSPQDNTMLVSGS 130 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCcEEEeccccHHHH-------------------HHHhhccCceeEEEecccCCeEEEecC
Confidence 3678888999996667778888888884441110 011122334567888887888887755
Q ss_pred CCeEE-EEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC-ce
Q 019290 116 YFGLM-VVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK-NV 193 (343)
Q Consensus 116 ~~gi~-~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~ 193 (343)
..++. .+|..+..++.-.... ...+...++.|..+.+.++... .+.|-.||..+. ..
T Consensus 131 Dd~v~k~~d~s~a~v~~~l~~h----tDYVR~g~~~~~~~hivvtGsY-----------------Dg~vrl~DtR~~~~~ 189 (487)
T KOG0310|consen 131 DDKVVKYWDLSTAYVQAELSGH----TDYVRCGDISPANDHIVVTGSY-----------------DGKVRLWDTRSLTSR 189 (487)
T ss_pred CCceEEEEEcCCcEEEEEecCC----cceeEeeccccCCCeEEEecCC-----------------CceEEEEEeccCCce
Confidence 55644 5567766553221222 1346666766644667776544 456666776544 22
Q ss_pred EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 194 TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 194 ~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
..-.+.......+.+-|.|. ++++ ..++.+.+||+.+
T Consensus 190 v~elnhg~pVe~vl~lpsgs-~ias-AgGn~vkVWDl~~ 226 (487)
T KOG0310|consen 190 VVELNHGCPVESVLALPSGS-LIAS-AGGNSVKVWDLTT 226 (487)
T ss_pred eEEecCCCceeeEEEcCCCC-EEEE-cCCCeEEEEEecC
Confidence 22234444556666767765 4444 4678999999874
No 138
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.30 E-value=0.042 Score=53.05 Aligned_cols=183 Identities=14% Similarity=0.119 Sum_probs=107.8
Q ss_pred EEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe-
Q 019290 40 LAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG- 118 (343)
Q Consensus 40 l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g- 118 (343)
++++++|.+||+. .+.+|...|..+++..... .. .........+++.+++..|+.+ ...+
T Consensus 25 ~~~s~nG~~L~t~-~~d~Vi~idv~t~~~~l~s--~~---------------~ed~d~ita~~l~~d~~~L~~a-~rs~l 85 (775)
T KOG0319|consen 25 VAWSSNGQHLYTA-CGDRVIIIDVATGSIALPS--GS---------------NEDEDEITALALTPDEEVLVTA-SRSQL 85 (775)
T ss_pred eeECCCCCEEEEe-cCceEEEEEccCCceeccc--CC---------------ccchhhhheeeecCCccEEEEe-eccce
Confidence 9999999988865 5667888888887653111 00 0112234567888855556666 3444
Q ss_pred EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec
Q 019290 119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN 198 (343)
Q Consensus 119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 198 (343)
+..+.+.++++.......... -+..+++++. |.+..+-. ..+.+-.+|...+.......
T Consensus 86 lrv~~L~tgk~irswKa~He~---Pvi~ma~~~~-g~LlAtgg-----------------aD~~v~VWdi~~~~~th~fk 144 (775)
T KOG0319|consen 86 LRVWSLPTGKLIRSWKAIHEA---PVITMAFDPT-GTLLATGG-----------------ADGRVKVWDIKNGYCTHSFK 144 (775)
T ss_pred EEEEEcccchHhHhHhhccCC---CeEEEEEcCC-CceEEecc-----------------ccceEEEEEeeCCEEEEEec
Confidence 777888888755443332222 2457899994 75544322 24567777777666665555
Q ss_pred CC-CCcceeEEecCCCE-EEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEe
Q 019290 199 GL-SFPNGVALSNNNSF-LLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM 264 (343)
Q Consensus 199 ~~-~~~~~i~~~~d~~~-lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~ 264 (343)
+. .....++|+|+-.. +.++...++.+..|++..... ..-....-.....++.+.+|+.-.++.
T Consensus 145 G~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~d~~~~ls~ 210 (775)
T KOG0319|consen 145 GHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT--CLHTMILHKSAVTSLAFSEDSLELLSV 210 (775)
T ss_pred CCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch--HHHHHHhhhhheeeeeeccCCceEEEe
Confidence 53 44577888876543 345666789999999874221 011111111224566676766544443
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.039 Score=50.46 Aligned_cols=160 Identities=17% Similarity=0.127 Sum_probs=95.0
Q ss_pred ccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC
Q 019290 29 LQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC 108 (343)
Q Consensus 29 ~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~ 108 (343)
+-+|+ -..+|+-++.|..++.++-.+.||.|...++.+-.+.. ..-....-+.+.. ++
T Consensus 78 ~v~Pg--~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-------------------aHYQ~ITcL~fs~-dg 135 (476)
T KOG0646|consen 78 IVLPG--PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS-------------------AHYQSITCLKFSD-DG 135 (476)
T ss_pred ccccc--ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-------------------hhccceeEEEEeC-CC
Confidence 34454 35788999999977788789999999999987543321 1111245677876 77
Q ss_pred eEEEEeCCCe-EEEEeCC-------CCeEEEcccccCCCCccCcceeEEeCC--CCeEEEEeCCcccccccceeeeeecC
Q 019290 109 DLYIADAYFG-LMVVGPN-------GGQAQQLASSAGGIPFRFTNDLDIDPN--TGIVYFTDSSIYFQRRQYFMSIATGD 178 (343)
Q Consensus 109 ~l~v~~~~~g-i~~~d~~-------~~~~~~~~~~~~~~~~~~~~~i~~d~~--dg~l~v~~~~~~~~~~~~~~~~~~~~ 178 (343)
..+|+...+| |..+..- +..+.++.... .....+.++.++.- +.++|-+-
T Consensus 136 s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~--~HtlsITDl~ig~Gg~~~rl~TaS------------------ 195 (476)
T KOG0646|consen 136 SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS--DHTLSITDLQIGSGGTNARLYTAS------------------ 195 (476)
T ss_pred cEEEecCCCccEEEEEEEeecccccCCCccceeeec--cCcceeEEEEecCCCccceEEEec------------------
Confidence 7777756666 5555431 11122211111 11234667777651 12333211
Q ss_pred CCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290 179 RSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ 231 (343)
Q Consensus 179 ~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~ 231 (343)
....+-.||...+++-.-..-...+..++++|.+..+|+.. ..|.|+...+-
T Consensus 196 ~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~ 247 (476)
T KOG0646|consen 196 EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT-EEGKIFQNLLF 247 (476)
T ss_pred CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC-CcceEEeeehh
Confidence 12345566776676532222335578999999998888764 57899998765
No 140
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.27 E-value=0.16 Score=47.24 Aligned_cols=227 Identities=12% Similarity=0.091 Sum_probs=123.2
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
+..+|+.-++|. +.++..+.+|..||.+-....++ ..+...+.+.-++... +.|||+++
T Consensus 289 gv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~------------------elPe~~G~iRtv~e~~--~di~vGTt 347 (626)
T KOG2106|consen 289 GVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRET------------------ELPEQFGPIRTVAEGK--GDILVGTT 347 (626)
T ss_pred ceEEEEEecCcc-EeecCccceEEeccccccccccc------------------cCchhcCCeeEEecCC--CcEEEeec
Confidence 466777888888 55566777777787433322222 1123445556666554 45999977
Q ss_pred CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290 116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV 195 (343)
Q Consensus 116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 195 (343)
.+-|..=+.+.+ ++...+.. + ...-+++..+ +...+++... .+.+..++...-++..
T Consensus 348 rN~iL~Gt~~~~-f~~~v~gh-~---delwgla~hp-s~~q~~T~gq-----------------dk~v~lW~~~k~~wt~ 404 (626)
T KOG2106|consen 348 RNFILQGTLENG-FTLTVQGH-G---DELWGLATHP-SKNQLLTCGQ-----------------DKHVRLWNDHKLEWTK 404 (626)
T ss_pred cceEEEeeecCC-ceEEEEec-c---cceeeEEcCC-ChhheeeccC-----------------cceEEEccCCceeEEE
Confidence 666776666644 32222221 1 2356888888 4788887654 3345555522122222
Q ss_pred eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCC-CceeeCCCCCEEEEeccCCCccccc
Q 019290 196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFP-DNIKSDSKGEFWIAMNSARGKIESN 274 (343)
Q Consensus 196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d~~G~lwi~~~~~~~~~~~~ 274 (343)
+.. .......|+|.| . ....+..++..+++...... ..+... +.| .-+...++|..+..... .+.+
T Consensus 405 ~~~--d~~~~~~fhpsg-~-va~Gt~~G~w~V~d~e~~~l----v~~~~d-~~~ls~v~ysp~G~~lAvgs~-d~~i--- 471 (626)
T KOG2106|consen 405 IIE--DPAECADFHPSG-V-VAVGTATGRWFVLDTETQDL----VTIHTD-NEQLSVVRYSPDGAFLAVGSH-DNHI--- 471 (626)
T ss_pred Eec--CceeEeeccCcc-e-EEEeeccceEEEEeccccee----EEEEec-CCceEEEEEcCCCCEEEEecC-CCeE---
Confidence 221 235677788877 3 44556788888888655222 111112 323 34667888865544332 2222
Q ss_pred cccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEE
Q 019290 275 KKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVV 340 (343)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~ 340 (343)
-+|+++.+|.....+..-.+ ..++..--. +++..+++.....|+.
T Consensus 472 ------------------yiy~Vs~~g~~y~r~~k~~g---s~ithLDwS~Ds~~~~~~S~d~eiLy 517 (626)
T KOG2106|consen 472 ------------------YIYRVSANGRKYSRVGKCSG---SPITHLDWSSDSQFLVSNSGDYEILY 517 (626)
T ss_pred ------------------EEEEECCCCcEEEEeeeecC---ceeEEeeecCCCceEEeccCceEEEE
Confidence 67888888876554432112 233333322 5555566655555543
No 141
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0096 Score=48.96 Aligned_cols=110 Identities=17% Similarity=0.226 Sum_probs=68.1
Q ss_pred CeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEE-EcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290 97 RPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQ-QLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA 175 (343)
Q Consensus 97 ~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~-~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~ 175 (343)
.-.|++.+ +.+|+.++...-++.-||++=... .+.-..++.+...+|.+-.-. |.+|.--..
T Consensus 132 eGWgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~Vd--G~lyANVw~------------- 194 (262)
T COG3823 132 EGWGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVD--GELYANVWQ------------- 194 (262)
T ss_pred cceeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeec--cEEEEeeee-------------
Confidence 44677666 567998864445888888752211 111234455566677775543 777762221
Q ss_pred ecCCCceEEEEeCCCCceEEee--c-----------CCCCcceeEEecCCCEEEEEEcCCCeEEE
Q 019290 176 TGDRSGRLLKYDPLKKNVTVMY--N-----------GLSFPNGVALSNNNSFLLLAESATLKILR 227 (343)
Q Consensus 176 ~~~~~~~v~~~d~~~~~~~~~~--~-----------~~~~~~~i~~~~d~~~lyv~~~~~~~i~~ 227 (343)
..+|.|++|++|++.... + ...-.||||.++++..+|++.-.-..++-
T Consensus 195 ----t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfE 255 (262)
T COG3823 195 ----TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFE 255 (262)
T ss_pred ----ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEE
Confidence 457999999988875322 1 12246899999998889998654444433
No 142
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.26 E-value=0.11 Score=45.44 Aligned_cols=228 Identities=14% Similarity=0.137 Sum_probs=117.9
Q ss_pred CCCcCCeeeEEEeCCCCeEEEEeCCCe-EEEEeCC--C--CeEEEcc---cc-cCCCCccCcceeEEeCCCCeEEEEeCC
Q 019290 92 EPLCGRPLGIKFNPVTCDLYIADAYFG-LMVVGPN--G--GQAQQLA---SS-AGGIPFRFTNDLDIDPNTGIVYFTDSS 162 (343)
Q Consensus 92 ~~~~~~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~--~--~~~~~~~---~~-~~~~~~~~~~~i~~d~~dg~l~v~~~~ 162 (343)
++....+.||++.+ .+.+||++.+.+ ...||.+ + +..+.+. .. ........|.++++... ..+-++...
T Consensus 19 Dp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~-~~F~vt~~g 96 (336)
T TIGR03118 19 DPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGS-DTFVVSGEG 96 (336)
T ss_pred CccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCC-CceEEcCCC
Confidence 34556789999999 899999987776 4455554 1 1111111 11 11111235677777652 333333321
Q ss_pred cccccccceeeeeecCCCceEEEEeCCCCce------EEeecC--CCCcceeEEecC--CCEEEEEEcCCCeEEEEEccC
Q 019290 163 IYFQRRQYFMSIATGDRSGRLLKYDPLKKNV------TVMYNG--LSFPNGVALSNN--NSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~------~~~~~~--~~~~~~i~~~~d--~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.. +...+ .-.+..+.|..|.+.-+.. ..+... ..--.|+++... +..||.++..+++|-+||-.=
T Consensus 97 ~~-~~a~F----if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 97 IT-GPSRF----LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred cc-cceeE----EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 10 00000 0112245566665432111 112111 122356777633 678999999999999997321
Q ss_pred ccccccceeeecCCCC-----CCceeeCCCCCEEEEeccCCCccccccccccccccCCCcc-cCCCeEEEECCCCCEEEE
Q 019290 233 ERTTYTPQLFAEMPRF-----PDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWF-LRDPVGVKFDVNGNVVDV 306 (343)
Q Consensus 233 ~~~~~~~~~~~~~~~~-----p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~d~~g~~~~~ 306 (343)
... ....-+. .+.. |.++.. -.|+|||+=-. .+.- ...... .-.+-|-.||.+|+.++.
T Consensus 172 ~~~-~~~g~F~-DP~iPagyAPFnIqn-ig~~lyVtYA~-qd~~-----------~~d~v~G~G~G~VdvFd~~G~l~~r 236 (336)
T TIGR03118 172 RPP-PLPGSFI-DPALPAGYAPFNVQN-LGGTLYVTYAQ-QDAD-----------RNDEVAGAGLGYVNVFTLNGQLLRR 236 (336)
T ss_pred ccc-cCCCCcc-CCCCCCCCCCcceEE-ECCeEEEEEEe-cCCc-----------ccccccCCCcceEEEEcCCCcEEEE
Confidence 100 0000111 1222 444432 35788886332 1100 000001 113578889999999998
Q ss_pred eeCCCCCccCCceeEE-------EeCCEEEEecCCCCeEEEEcC
Q 019290 307 LDGNEGNTLNSVSEVQ-------EYGEYLYTGSSVQPYVVVIKA 343 (343)
Q Consensus 307 ~~~~~~~~~~~~~~~~-------~~~g~l~i~~~~~~~i~~~~~ 343 (343)
+.+. + ..+.+..+. ...|.|.||++...+|-.||+
T Consensus 237 ~as~-g-~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 237 VASS-G-RLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDP 278 (336)
T ss_pred eccC-C-cccCCceeeeChhhhCCCCCCeEEeecCCceeEEecC
Confidence 8642 3 234443332 237999999999999998874
No 143
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.21 E-value=0.14 Score=47.69 Aligned_cols=268 Identities=15% Similarity=0.114 Sum_probs=138.0
Q ss_pred ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcC---Cee
Q 019290 23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCG---RPL 99 (343)
Q Consensus 23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~ 99 (343)
....+++.--..+.-.++.+.+.|+.+.+.+...+.-.||-++.++.++...-.+- ..+..+.+ ..+
T Consensus 203 ~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI----------~Dm~nTKGHia~lt 272 (641)
T KOG0772|consen 203 MRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI----------RDMYNTKGHIAELT 272 (641)
T ss_pred chhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhh----------hhhhccCCceeeee
Confidence 44466665556667889999999886666556666777777776666653211110 00001111 123
Q ss_pred eEEEeCCCCeEEEEeCCCe-EEEEeCCCC--eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290 100 GIKFNPVTCDLYIADAYFG-LMVVGPNGG--QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 100 gi~~~~~~~~l~v~~~~~g-i~~~d~~~~--~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
.-+++|.....+++...+| +..+|.+.. +.+.+-....+..-..+...++++ ||.++.+.-.
T Consensus 273 ~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~-------------- 337 (641)
T KOG0772|consen 273 CGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCL-------------- 337 (641)
T ss_pred ccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-Ccchhhhccc--------------
Confidence 3345564455666655666 666666432 233332222222224466778888 6887543211
Q ss_pred cCCCceEEEEeCCCCce------EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCC-CCC
Q 019290 177 GDRSGRLLKYDPLKKNV------TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMP-RFP 249 (343)
Q Consensus 177 ~~~~~~v~~~d~~~~~~------~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~p 249 (343)
.|.|-.|+..+--+ +...........+.|+.||+.|. +-...+.+-.||+..-.. .......++ .+|
T Consensus 338 ---DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll-SRg~D~tLKvWDLrq~kk--pL~~~tgL~t~~~ 411 (641)
T KOG0772|consen 338 ---DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL-SRGFDDTLKVWDLRQFKK--PLNVRTGLPTPFP 411 (641)
T ss_pred ---CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh-hccCCCceeeeecccccc--chhhhcCCCccCC
Confidence 34455555321111 11123345678899999998654 445678899999864211 111111122 123
Q ss_pred C-ceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCCCCCccCCceeE--EEeC
Q 019290 250 D-NIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGNEGNTLNSVSEV--QEYG 325 (343)
Q Consensus 250 ~-~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~~~~~--~~~~ 325 (343)
. +-+++|+.+|.++....-.... .+.++.||+. -..+..+.-+. ..+..+ .+.-
T Consensus 412 ~tdc~FSPd~kli~TGtS~~~~~~------------------~g~L~f~d~~t~d~v~ki~i~~----aSvv~~~WhpkL 469 (641)
T KOG0772|consen 412 GTDCCFSPDDKLILTGTSAPNGMT------------------AGTLFFFDRMTLDTVYKIDIST----ASVVRCLWHPKL 469 (641)
T ss_pred CCccccCCCceEEEecccccCCCC------------------CceEEEEeccceeeEEEecCCC----ceEEEEeecchh
Confidence 2 3568899888877543222111 2356677663 23333332211 111111 2335
Q ss_pred CEEEEecCCCCeEEEEcC
Q 019290 326 EYLYTGSSVQPYVVVIKA 343 (343)
Q Consensus 326 g~l~i~~~~~~~i~~~~~ 343 (343)
++|++|+.+...=+.|++
T Consensus 470 NQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 470 NQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred hheeeecCCCceEEEECc
Confidence 677777777665555553
No 144
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.20 E-value=0.045 Score=53.05 Aligned_cols=180 Identities=13% Similarity=0.099 Sum_probs=106.8
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCe-eeEEEeCCCCeEEEEeC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRP-LGIKFNPVTCDLYIADA 115 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~~~~~~~l~v~~~ 115 (343)
..+..+.|+.+.|.....+..+..|...+....+.- ..-..| ..+.|.| . ..||++.
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y--------------------~GH~~PVwdV~F~P-~-GyYFata 511 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY--------------------KGHLAPVWDVQFAP-R-GYYFATA 511 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEe--------------------cCCCcceeeEEecC-C-ceEEEec
Confidence 446677888887777778887777777664433221 111223 4577776 4 4555533
Q ss_pred -CCe---EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC
Q 019290 116 -YFG---LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK 191 (343)
Q Consensus 116 -~~g---i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 191 (343)
+++ ++..|.. +..++... +..-+..+.+.| +.-|+++.+. ...|-.||..+|
T Consensus 512 s~D~tArLWs~d~~--~PlRifag----hlsDV~cv~FHP--Ns~Y~aTGSs----------------D~tVRlWDv~~G 567 (707)
T KOG0263|consen 512 SHDQTARLWSTDHN--KPLRIFAG----HLSDVDCVSFHP--NSNYVATGSS----------------DRTVRLWDVSTG 567 (707)
T ss_pred CCCceeeeeecccC--Cchhhhcc----cccccceEEECC--cccccccCCC----------------CceEEEEEcCCC
Confidence 233 4444431 12122111 123456678899 4666665442 345666777666
Q ss_pred ceEEeecC-CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290 192 NVTVMYNG-LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 192 ~~~~~~~~-~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
...++..+ -.....++++|+|++| ++....+.|..||+.+...+. .+..-.+....+.+..||+++++...
T Consensus 568 ~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg~ed~~I~iWDl~~~~~v~---~l~~Ht~ti~SlsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 568 NSVRIFTGHKGPVTALAFSPCGRYL-ASGDEDGLIKIWDLANGSLVK---QLKGHTGTIYSLSFSRDGNVLASGGA 639 (707)
T ss_pred cEEEEecCCCCceEEEEEcCCCceE-eecccCCcEEEEEcCCCcchh---hhhcccCceeEEEEecCCCEEEecCC
Confidence 65555443 4557899999999865 455678999999987632211 11111233556788899999998776
No 145
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.20 E-value=0.029 Score=54.14 Aligned_cols=159 Identities=11% Similarity=0.024 Sum_probs=94.9
Q ss_pred ccccccccCCCCCCCceEEEcCCCCeeEEEec----CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCe
Q 019290 23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVS----DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRP 98 (343)
Q Consensus 23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~----~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 98 (343)
.+...|+.+++ .|..+.++++|..+|++.. ...+...+..+..+..+... .
T Consensus 225 meV~~qV~Vdg--npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni-----------------------~ 279 (635)
T PRK02888 225 MEVAWQVMVDG--NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI-----------------------A 279 (635)
T ss_pred ceEEEEEEeCC--CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch-----------------------H
Confidence 45567777777 8999999999998887642 22333333332222211100 0
Q ss_pred eeEEEeCCCCeEEEEeCCCeEEEEeCCC-----CeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCccccccccee
Q 019290 99 LGIKFNPVTCDLYIADAYFGLMVVGPNG-----GQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFM 172 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~~~~gi~~~d~~~-----~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~ 172 (343)
....+.++++..|++ .+.|-.+|..+ .++...... + ..|+++.++| ||+ +|++..-
T Consensus 280 ~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV--G---KsPHGV~vSP-DGkylyVankl---------- 341 (635)
T PRK02888 280 RIEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV--P---KNPHGVNTSP-DGKYFIANGKL---------- 341 (635)
T ss_pred HHHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC--C---CCccceEECC-CCCEEEEeCCC----------
Confidence 001122324566663 46799999887 234333222 2 5689999999 576 5554432
Q ss_pred eeeecCCCceEEEEeCCCCce------------EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 173 SIATGDRSGRLLKYDPLKKNV------------TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 173 ~~~~~~~~~~v~~~d~~~~~~------------~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
+..|..+|.++.+. ..-..-...|--.+|+.+|. .|.+-..+++|.+|+++.
T Consensus 342 -------S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 342 -------SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -------CCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 45677777654221 11112245677888988875 898888889999999875
No 146
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.18 E-value=0.049 Score=47.46 Aligned_cols=154 Identities=15% Similarity=0.162 Sum_probs=97.5
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCC----eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSG----WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI 112 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v 112 (343)
..++.+-|...+|..+..++.|-.||..... ++.|. ..-....|.++|.+..|.+
T Consensus 175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q---------------------d~~~vrsiSfHPsGefllv 233 (430)
T KOG0640|consen 175 VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ---------------------DTEPVRSISFHPSGEFLLV 233 (430)
T ss_pred ccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh---------------------ccceeeeEeecCCCceEEE
Confidence 5688899999988888899988888875432 22221 1223568999995556777
Q ss_pred EeCCCeEEEEeCCCCeEEEcccc-cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC
Q 019290 113 ADAYFGLMVVGPNGGQAQQLASS-AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK 191 (343)
Q Consensus 113 ~~~~~gi~~~d~~~~~~~~~~~~-~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 191 (343)
++...-+..||.+|- +.+... +..+....++++...+. ++||++.+. .|.|-.||.-++
T Consensus 234 gTdHp~~rlYdv~T~--QcfvsanPd~qht~ai~~V~Ys~t-~~lYvTaSk-----------------DG~IklwDGVS~ 293 (430)
T KOG0640|consen 234 GTDHPTLRLYDVNTY--QCFVSANPDDQHTGAITQVRYSST-GSLYVTASK-----------------DGAIKLWDGVSN 293 (430)
T ss_pred ecCCCceeEEeccce--eEeeecCcccccccceeEEEecCC-ccEEEEecc-----------------CCcEEeeccccH
Confidence 754445788888864 343322 22333456888889995 999998765 455666775433
Q ss_pred ce-EEe--ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 192 NV-TVM--YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 192 ~~-~~~--~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
+. +.+ ..+........|..+++++.-+ -.+..+..|.+.+
T Consensus 294 rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS-G~DS~vkLWEi~t 336 (430)
T KOG0640|consen 294 RCVRTIGNAHGGSEVCSAVFTKNGKYILSS-GKDSTVKLWEIST 336 (430)
T ss_pred HHHHHHHhhcCCceeeeEEEccCCeEEeec-CCcceeeeeeecC
Confidence 32 122 1234556667788888754333 2345566666654
No 147
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.17 E-value=0.014 Score=52.61 Aligned_cols=186 Identities=12% Similarity=0.057 Sum_probs=111.3
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
....+++-|+|++|-++..+..=-.||..++.-.... +.......++++.+ +|.|..+..
T Consensus 263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-------------------EGHs~~v~~iaf~~-DGSL~~tGG 322 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-------------------EGHSKGVFSIAFQP-DGSLAATGG 322 (459)
T ss_pred hheeeeecCCCceeeecccccchhhcccccchhhHhh-------------------cccccccceeEecC-CCceeeccC
Confidence 4668889999997777777765555677665322221 12233467899998 888877633
Q ss_pred CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290 116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT 194 (343)
Q Consensus 116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 194 (343)
-+. -..+|.++|.-..+... ....+.+++++|+ |....+-++. ...+||.+... ....
T Consensus 323 lD~~~RvWDlRtgr~im~L~g----H~k~I~~V~fsPN-Gy~lATgs~D---------------nt~kVWDLR~r-~~ly 381 (459)
T KOG0272|consen 323 LDSLGRVWDLRTGRCIMFLAG----HIKEILSVAFSPN-GYHLATGSSD---------------NTCKVWDLRMR-SELY 381 (459)
T ss_pred ccchhheeecccCcEEEEecc----cccceeeEeECCC-ceEEeecCCC---------------CcEEEeeeccc-ccce
Confidence 333 45779998865443332 2245789999995 8887765541 13456655432 2333
Q ss_pred EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEec
Q 019290 195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMN 265 (343)
Q Consensus 195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~ 265 (343)
.+.....-...+.++|+.+...++.+.++.+-.|...+- ...+.++.-.+..-++.+.++|...++..
T Consensus 382 ~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 382 TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred ecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCCceEEEec
Confidence 444444556788898876667778788888888875431 11222222222223344566776555543
No 148
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.16 E-value=0.14 Score=46.76 Aligned_cols=136 Identities=18% Similarity=0.258 Sum_probs=75.0
Q ss_pred ceEEEEeCCCCceEEee-------cCCCCcceeEEecC---CCEEEEEEcCCCeEEEEEccC--cccc--ccceeeecCC
Q 019290 181 GRLLKYDPLKKNVTVMY-------NGLSFPNGVALSNN---NSFLLLAESATLKILRFWLQG--ERTT--YTPQLFAEMP 246 (343)
Q Consensus 181 ~~v~~~d~~~~~~~~~~-------~~~~~~~~i~~~~d---~~~lyv~~~~~~~i~~~~~~~--~~~~--~~~~~~~~~~ 246 (343)
-++|++|+.++.++.+. .....+.|+|+..+ +....+....++.+..|.+.. +..+ ...+.| ...
T Consensus 129 l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f-~~~ 207 (381)
T PF02333_consen 129 LRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF-KVG 207 (381)
T ss_dssp EEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE-E-S
T ss_pred EEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe-cCC
Confidence 35888998777765442 23445789998642 443333455678898888753 2211 111222 244
Q ss_pred CCCCceeeCC-CCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECC--CC-CEEEEeeCCCC-CccCCc---
Q 019290 247 RFPDNIKSDS-KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDV--NG-NVVDVLDGNEG-NTLNSV--- 318 (343)
Q Consensus 247 ~~p~~i~~d~-~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~--~g-~~~~~~~~~~~-~~~~~~--- 318 (343)
..+.++++|. .|.||++.-. .+|.+|+. ++ ..-..+....+ ....-+
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~-------------------------~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGl 262 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEED-------------------------VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGL 262 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETT-------------------------TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEE
T ss_pred CcceEEEEecccCCEEEecCc-------------------------cEEEEEecCCCCCCcceeeecccccccccCccce
Confidence 5688899876 5899999865 48888864 32 22222211112 112222
Q ss_pred eeEEE-e-CCEEEEecCCCCeEEEEc
Q 019290 319 SEVQE-Y-GEYLYTGSSVQPYVVVIK 342 (343)
Q Consensus 319 ~~~~~-~-~g~l~i~~~~~~~i~~~~ 342 (343)
+.+.. + .|+|.+++-..++..+|+
T Consensus 263 aly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 263 ALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred EEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 22221 2 578999999999888886
No 149
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.16 E-value=0.26 Score=47.43 Aligned_cols=260 Identities=13% Similarity=0.055 Sum_probs=119.5
Q ss_pred CeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC---------C
Q 019290 47 EGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA---------Y 116 (343)
Q Consensus 47 ~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~---------~ 116 (343)
..+|++..++.|+.+|.++++.. ++...... ........+..+. ++.+|++.. .
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~--------------~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~ 174 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQV--------------PPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVR 174 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCc--------------CcceEecCCCEEE--CCEEEEeccccccccCCCC
Confidence 34888888999999999887533 11110000 0000000122344 467777642 1
Q ss_pred CeEEEEeCCCCeEEEcccccCCCC-----------------ccCcceeEEeCCCCeEEEEeCCcccccccceeee--eec
Q 019290 117 FGLMVVGPNGGQAQQLASSAGGIP-----------------FRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI--ATG 177 (343)
Q Consensus 117 ~gi~~~d~~~~~~~~~~~~~~~~~-----------------~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~--~~~ 177 (343)
..++.+|.++|+...........+ ...-...++|+.++.+|++..... ...+.... ...
T Consensus 175 g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~--~~~~~~~~~~~~~ 252 (488)
T cd00216 175 GALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGS--PWNWGGRRTPGDN 252 (488)
T ss_pred cEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCC--CCccCCccCCCCC
Confidence 248999999998765433211100 001124577754578999764310 00000000 000
Q ss_pred CCCceEEEEeCCCCceEEeecCC-------CCcceeEEe----cCCC---EEEEEEcCCCeEEEEEccCccccccceeee
Q 019290 178 DRSGRLLKYDPLKKNVTVMYNGL-------SFPNGVALS----NNNS---FLLLAESATLKILRFWLQGERTTYTPQLFA 243 (343)
Q Consensus 178 ~~~~~v~~~d~~~~~~~~~~~~~-------~~~~~i~~~----~d~~---~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~ 243 (343)
...+.|+.+|.++|+..-..+.. ..+....+. .++. .+|+. +.++.++.++..+ ++. ++.
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g-~~~G~l~ald~~t----G~~-~W~ 326 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHA-PKNGFFYVLDRTT----GKL-ISA 326 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEE-CCCceEEEEECCC----CcE-eeE
Confidence 11347999999888765322111 111111111 1232 34444 4678899999765 221 111
Q ss_pred -cCCCCCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcc-cCCCeEEEECC-CCCEEEEeeCCCCC------c
Q 019290 244 -EMPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWF-LRDPVGVKFDV-NGNVVDVLDGNEGN------T 314 (343)
Q Consensus 244 -~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~d~-~g~~~~~~~~~~~~------~ 314 (343)
+.. -.++..++ +.+|+........+. .. ...++. ...+.++++|. +|+.+=........ .
T Consensus 327 ~~~~--~~~~~~~~-~~vyv~~~~~~~~~~-~~-------~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~ 395 (488)
T cd00216 327 RPEV--EQPMAYDP-GLVYLGAFHIPLGLP-PQ-------KKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGF 395 (488)
T ss_pred eEee--ccccccCC-ceEEEccccccccCc-cc-------ccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCC
Confidence 111 12344554 778886532000000 00 000111 22468999996 67765443322110 0
Q ss_pred cCCceeEEEeCCEEEEecCCCCeEEEEc
Q 019290 315 LNSVSEVQEYGEYLYTGSSVQPYVVVIK 342 (343)
Q Consensus 315 ~~~~~~~~~~~g~l~i~~~~~~~i~~~~ 342 (343)
....+.+...++.||+++. ...+.-++
T Consensus 396 ~~~~~~~~~~g~~v~~g~~-dG~l~ald 422 (488)
T cd00216 396 PHWGGSLATAGNLVFAGAA-DGYFRAFD 422 (488)
T ss_pred cccCcceEecCCeEEEECC-CCeEEEEE
Confidence 0111223344677887763 34454443
No 150
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.15 E-value=0.008 Score=57.78 Aligned_cols=124 Identities=19% Similarity=0.285 Sum_probs=77.1
Q ss_pred CcCCeeeEEEeCCCCeEEEEeCC-C-------------------eEEEEeCCCC-------eEEEccccc----------
Q 019290 94 LCGRPLGIKFNPVTCDLYIADAY-F-------------------GLMVVGPNGG-------QAQQLASSA---------- 136 (343)
Q Consensus 94 ~~~~p~gi~~~~~~~~l~v~~~~-~-------------------gi~~~d~~~~-------~~~~~~~~~---------- 136 (343)
.+.+|.++.+++.++.+|++.+. . .|++++++.+ .+..+....
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 35578999999988899998432 1 3889987755 333332111
Q ss_pred ---CCCCccCcceeEEeCCCCeEEEEeCCcccccc------cc-eeeeeecCCCceEEEEeCCCCceEEeecCC--CCcc
Q 019290 137 ---GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRR------QY-FMSIATGDRSGRLLKYDPLKKNVTVMYNGL--SFPN 204 (343)
Q Consensus 137 ---~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~------~~-~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~ 204 (343)
....+..|..|++|+ +|+|||.+........ +. .+.+.... ...++..++.+++++++.... ....
T Consensus 428 ~~~~~~~f~sPDNL~~d~-~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~-G~~~~~~~~~~g~~~rf~~~P~gaE~t 505 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDP-DGNLWIQEDGGGSNNNLPGVTPDGEVYDFARND-GNNVWAYDPDTGELKRFLVGPNGAEIT 505 (524)
T ss_pred CcccCCCcCCCCceEECC-CCCEEEEeCCCCCCcccccccccCceeeeeecc-cceeeeccccccceeeeccCCCCcccc
Confidence 123467889999999 5999999765321100 00 00000000 011555677778887776443 3468
Q ss_pred eeEEecCCCEEEEEE
Q 019290 205 GVALSNNNSFLLLAE 219 (343)
Q Consensus 205 ~i~~~~d~~~lyv~~ 219 (343)
|++++||+++|++.-
T Consensus 506 G~~fspDg~tlFvni 520 (524)
T PF05787_consen 506 GPCFSPDGRTLFVNI 520 (524)
T ss_pred cceECCCCCEEEEEE
Confidence 999999999998853
No 151
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.13 E-value=0.067 Score=47.17 Aligned_cols=93 Identities=17% Similarity=0.219 Sum_probs=60.5
Q ss_pred eeeEEEeCCCCeEEEEeC-------------CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcc
Q 019290 98 PLGIKFNPVTCDLYIADA-------------YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIY 164 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~-------------~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~ 164 (343)
-+|+++.. +.--||+.. .+|-..+|..++++.. . .+.++++--.. +|+||+.|+.
T Consensus 154 LNGlA~~~-g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~--~-----GLsmPhSPRWh--dgrLwvldsg-- 221 (335)
T TIGR03032 154 LNGMALDD-GEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVA--S-----GLSMPHSPRWY--QGKLWLLNSG-- 221 (335)
T ss_pred ecceeeeC-CeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEE--c-----CccCCcCCcEe--CCeEEEEECC--
Confidence 46888875 555665521 1233345555543321 1 12345554444 4899999987
Q ss_pred cccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEE
Q 019290 165 FQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAE 219 (343)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~ 219 (343)
.+.+.++|+++|+.+.+..-...+.|+++. |+.++|.-
T Consensus 222 ---------------tGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 222 ---------------RGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred ---------------CCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEe
Confidence 788999999889888776555678999987 77777653
No 152
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.11 E-value=0.1 Score=47.74 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=77.3
Q ss_pred CCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe--EEEEe-CC---C
Q 019290 44 CNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD--LYIAD-AY---F 117 (343)
Q Consensus 44 ~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~--l~v~~-~~---~ 117 (343)
+...++......++|+.||.+++....+.... . ++ .....++.+. ++. |.++. .. +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr--~--NN------------VDvrygf~l~--g~~vDlavas~R~~g~n 127 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPVGR--P--NN------------VDVRYGFPLN--GKTVDLAVASDRSDGRN 127 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE-SS---E--EE------------EEEEEEEEET--TEEEEEEEEEE-CCCT-
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeecCCC--c--ce------------eeeecceecC--CceEEEEEEecCcCCCC
Confidence 44554444556789999999987766552100 0 00 0001233332 222 33332 21 2
Q ss_pred e--EEEEeCCCCeEEEcccccC--CCCccCcceeEE--eCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEe-CCC
Q 019290 118 G--LMVVGPNGGQAQQLASSAG--GIPFRFTNDLDI--DPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYD-PLK 190 (343)
Q Consensus 118 g--i~~~d~~~~~~~~~~~~~~--~~~~~~~~~i~~--d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~ 190 (343)
. +|.+|++++.++.+..... .....-+.+++. ++.+|.+|+-...+ .+.-..|++. ...
T Consensus 128 ~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k--------------~G~~~Qy~L~~~~~ 193 (381)
T PF02333_consen 128 SLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGK--------------DGRVEQYELTDDGD 193 (381)
T ss_dssp EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEET--------------TSEEEEEEEEE-TT
T ss_pred eEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecC--------------CceEEEEEEEeCCC
Confidence 3 7888988887776532111 111233667775 44347777633221 0011234442 222
Q ss_pred CceE----EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290 191 KNVT----VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE 233 (343)
Q Consensus 191 ~~~~----~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~ 233 (343)
+.+. +-....+.+.|.+++...+.||+++. +..||+|+.+..
T Consensus 194 g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE-~~GIW~y~Aep~ 239 (381)
T PF02333_consen 194 GKVSATLVREFKVGSQPEGCVVDDETGRLYVGEE-DVGIWRYDAEPE 239 (381)
T ss_dssp SSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEET-TTEEEEEESSCC
T ss_pred CcEeeEEEEEecCCCcceEEEEecccCCEEEecC-ccEEEEEecCCC
Confidence 3321 11223356899999988889999985 679999998743
No 153
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.07 E-value=0.33 Score=47.11 Aligned_cols=36 Identities=14% Similarity=0.261 Sum_probs=27.2
Q ss_pred eEEEeCCCCeEEEEeCC----------------CeEEEEeCCCCeEEEcccc
Q 019290 100 GIKFNPVTCDLYIADAY----------------FGLMVVGPNGGQAQQLASS 135 (343)
Q Consensus 100 gi~~~~~~~~l~v~~~~----------------~gi~~~d~~~~~~~~~~~~ 135 (343)
.+++|++.+.||++... +.|+.+|.+||+++...+.
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~ 289 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT 289 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC
Confidence 47889878889998511 2589999999998876544
No 154
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.02 E-value=0.051 Score=46.42 Aligned_cols=164 Identities=13% Similarity=0.090 Sum_probs=96.3
Q ss_pred cccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC
Q 019290 26 YQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP 105 (343)
Q Consensus 26 ~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~ 105 (343)
+.-++.|. .++....+++-+..+.++..+|.|-+||..++.... .+. .......+.|.+.+
T Consensus 140 ~~kI~t~~-skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v--~s~----------------~~h~~~Ind~q~s~ 200 (327)
T KOG0643|consen 140 YLKIPTPD-SKITSALWGPLGETIIAGHEDGSISIYDARTGKELV--DSD----------------EEHSSKINDLQFSR 200 (327)
T ss_pred eEEecCCc-cceeeeeecccCCEEEEecCCCcEEEEEcccCceee--ech----------------hhhccccccccccC
Confidence 45566665 578899999999988999999999999998753221 110 01122467888998
Q ss_pred CCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEE
Q 019290 106 VTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLL 184 (343)
Q Consensus 106 ~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 184 (343)
++..++....+. -..+|..+=.+..-.... .-+|..++.|..+.+..+... ..--|.
T Consensus 201 -d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-----~PvN~aaisP~~d~VilgGGq----------------eA~dVT 258 (327)
T KOG0643|consen 201 -DRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-----RPVNTAAISPLLDHVILGGGQ----------------EAMDVT 258 (327)
T ss_pred -CcceEEecccCccceeeeccceeeEEEeeec-----ccccceecccccceEEecCCc----------------eeeeee
Confidence 888888754432 455666543333222221 236777777752333331110 000111
Q ss_pred EEeCCCCceE-------------EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290 185 KYDPLKKNVT-------------VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ 231 (343)
Q Consensus 185 ~~d~~~~~~~-------------~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~ 231 (343)
--+...|+++ ++...+...|.++++|+|+ .|.+.-.++-|.....+
T Consensus 259 TT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-sYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 259 TTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-SYSSGGEDGYVRLHHFD 317 (327)
T ss_pred eecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-ccccCCCCceEEEEEec
Confidence 1112222221 2334566789999999997 78887666766555443
No 155
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.02 E-value=0.025 Score=49.41 Aligned_cols=203 Identities=17% Similarity=0.187 Sum_probs=115.2
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
...++.+++|-..+-.+..+|.|-.|...++... .|.. ........+.|+.++..++-+.
T Consensus 265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdr-------------------AHtkGvt~l~FSrD~SqiLS~s 325 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDR-------------------AHTKGVTCLSFSRDNSQILSAS 325 (508)
T ss_pred ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhh-------------------hhccCeeEEEEccCcchhhccc
Confidence 4668888888885667778888887776665422 2210 1112356678887444566664
Q ss_pred CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290 115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT 194 (343)
Q Consensus 115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 194 (343)
...-+..-..++|+.-.- ..+. ..++|...+.+ ||.-.++.++ .+.|-.|+.++.+..
T Consensus 326 fD~tvRiHGlKSGK~LKE---frGH-sSyvn~a~ft~-dG~~iisaSs-----------------DgtvkvW~~KtteC~ 383 (508)
T KOG0275|consen 326 FDQTVRIHGLKSGKCLKE---FRGH-SSYVNEATFTD-DGHHIISASS-----------------DGTVKVWHGKTTECL 383 (508)
T ss_pred ccceEEEeccccchhHHH---hcCc-cccccceEEcC-CCCeEEEecC-----------------CccEEEecCcchhhh
Confidence 333455556676663221 1121 25788889998 6888887765 566777776655432
Q ss_pred -EeecCC--CCcceeEEec-CCCEEEEEEcCCCeEEEEEccCccccccceeeec--CC-CCCCceeeCCCCCEEEEeccC
Q 019290 195 -VMYNGL--SFPNGVALSN-NNSFLLLAESATLKILRFWLQGERTTYTPQLFAE--MP-RFPDNIKSDSKGEFWIAMNSA 267 (343)
Q Consensus 195 -~~~~~~--~~~~~i~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~-~~p~~i~~d~~G~lwi~~~~~ 267 (343)
++.... ...+.+.+-| +.....|++ ..+.|+..++.|+ -.+.+.. .+ |..-+-++++.|....|-..
T Consensus 384 ~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~qGQ----vVrsfsSGkREgGdFi~~~lSpkGewiYcigE- 457 (508)
T KOG0275|consen 384 STFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQGQ----VVRSFSSGKREGGDFINAILSPKGEWIYCIGE- 457 (508)
T ss_pred hhccCCCCcccceeEEEcCCCCceEEEEc-CCCeEEEEeccce----EEeeeccCCccCCceEEEEecCCCcEEEEEcc-
Confidence 111111 1123333333 445566665 4678999888873 2233332 11 11112356888865444433
Q ss_pred CCccccccccccccccCCCcccCCCeEEEECC-CCCEEEEee
Q 019290 268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDV-NGNVVDVLD 308 (343)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~ 308 (343)
.+.+|||+. .|++...+.
T Consensus 458 -----------------------D~vlYCF~~~sG~LE~tl~ 476 (508)
T KOG0275|consen 458 -----------------------DGVLYCFSVLSGKLERTLP 476 (508)
T ss_pred -----------------------CcEEEEEEeecCceeeeee
Confidence 458899986 677655543
No 156
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.01 E-value=0.02 Score=51.59 Aligned_cols=156 Identities=10% Similarity=0.081 Sum_probs=100.8
Q ss_pred CCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 35 VGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 35 ~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
.++.+-++-|||..+.++..++.++-+|.++....... .....+.+.+++.+++..++..+
T Consensus 313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~-------------------gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE-------------------GVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred CCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc-------------------ccccceeEEEEEcCCCcEEEEEe
Confidence 46889999999999999999999999998774322110 01122467899998566777775
Q ss_pred CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce-
Q 019290 115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV- 193 (343)
Q Consensus 115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~- 193 (343)
....+..++.++..-..+.... ..+.++.+.. ||++.+.+.. ...+..+|.+..+.
T Consensus 374 ~d~~i~l~~~e~~~dr~lise~-----~~its~~iS~-d~k~~LvnL~-----------------~qei~LWDl~e~~lv 430 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRGLISEE-----QPITSFSISK-DGKLALVNLQ-----------------DQEIHLWDLEENKLV 430 (519)
T ss_pred cccceeeechhhhhhhcccccc-----CceeEEEEcC-CCcEEEEEcc-----------------cCeeEEeecchhhHH
Confidence 5566888888754222122221 3477888998 6998887654 44577777653322
Q ss_pred EEeecC--CCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 194 TVMYNG--LSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 194 ~~~~~~--~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
+.+... ....-..||.-....+..+.+.++.||.|+...
T Consensus 431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 111111 122345566543445777888899999998653
No 157
>PTZ00420 coronin; Provisional
Probab=96.99 E-value=0.11 Score=50.53 Aligned_cols=104 Identities=12% Similarity=0.123 Sum_probs=63.7
Q ss_pred cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc--e-------EEeecCCCCcceeEEecCC
Q 019290 142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN--V-------TVMYNGLSFPNGVALSNNN 212 (343)
Q Consensus 142 ~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~-------~~~~~~~~~~~~i~~~~d~ 212 (343)
..+.++++.+.++.+.++... .+.|..||..++. . ..+.........++++|++
T Consensus 75 ~~V~~lafsP~~~~lLASgS~-----------------DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g 137 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSE-----------------DLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN 137 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeC-----------------CCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC
Confidence 357888998832556554433 4556666754321 1 1222233456789999998
Q ss_pred CEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290 213 SFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 213 ~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
..++++...++.|..||+..... ...+ ........+.++++|++++++..
T Consensus 138 ~~iLaSgS~DgtIrIWDl~tg~~---~~~i-~~~~~V~SlswspdG~lLat~s~ 187 (568)
T PTZ00420 138 YYIMCSSGFDSFVNIWDIENEKR---AFQI-NMPKKLSSLKWNIKGNLLSGTCV 187 (568)
T ss_pred CeEEEEEeCCCeEEEEECCCCcE---EEEE-ecCCcEEEEEECCCCCEEEEEec
Confidence 87766766789999999875321 1111 12223456778999998887654
No 158
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.99 E-value=0.28 Score=47.61 Aligned_cols=123 Identities=14% Similarity=0.110 Sum_probs=64.0
Q ss_pred CCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeC
Q 019290 46 GEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGP 124 (343)
Q Consensus 46 g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~ 124 (343)
+..+|+....+.|+.+|..+++.. ++....... . ...........++++. ++.+|+++....|+.+|.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~---~------~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa 137 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDD---V------IPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDA 137 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcc---c------ccccccccccccceEE--CCEEEEEcCCCEEEEEEC
Confidence 344888878888999999886532 221100000 0 0000000012345565 578999865566999999
Q ss_pred CCCeEEEcccccCCCC-ccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290 125 NGGQAQQLASSAGGIP-FRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV 193 (343)
Q Consensus 125 ~~~~~~~~~~~~~~~~-~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 193 (343)
++|+...-........ ......-.+. ++.++++..+..+ ...+.|+.+|.++|+.
T Consensus 138 ~TGk~~W~~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 138 KTGKVVWSKKNGDYKAGYTITAAPLVV--KGKVITGISGGEF------------GVRGYVTAYDAKTGKL 193 (527)
T ss_pred CCCCEEeecccccccccccccCCcEEE--CCEEEEeeccccc------------CCCcEEEEEECCCCce
Confidence 9998765432211100 0111122333 3788887543211 1135677777776664
No 159
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.097 Score=43.25 Aligned_cols=190 Identities=15% Similarity=0.066 Sum_probs=99.0
Q ss_pred ccccccccCCCCCCCceEEEcCCCCeeEEEe---cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCee
Q 019290 23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGV---SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPL 99 (343)
Q Consensus 23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~---~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 99 (343)
+..++.++......-.++.++.. . ++-++ ....|.++|..+++...-. ..++ ....
T Consensus 34 ~evi~~yphDs~sfTQGL~~~~g-~-i~esTG~yg~S~ir~~~L~~gq~~~s~-----------------~l~~--~~~F 92 (262)
T COG3823 34 YEVIRTYPHDSTSFTQGLEYLDG-H-ILESTGLYGFSKIRVSDLTTGQEIFSE-----------------KLAP--DTVF 92 (262)
T ss_pred eEEEEeccCchhhhhcceeeeCC-E-EEEeccccccceeEEEeccCceEEEEe-----------------ecCC--cccc
Confidence 44556666654344567777644 4 55443 3457888888865432110 1111 1122
Q ss_pred eEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccc-cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290 100 GIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASS-AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG 177 (343)
Q Consensus 100 gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~-~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~ 177 (343)
|-.+..-++.+|.-++..| -+++|.++- +.+-.. .++. --+++-|. .++|.++.+
T Consensus 93 gEGit~~gd~~y~LTw~egvaf~~d~~t~--~~lg~~~y~Ge----GWgLt~d~--~~LimsdGs--------------- 149 (262)
T COG3823 93 GEGITKLGDYFYQLTWKEGVAFKYDADTL--EELGRFSYEGE----GWGLTSDD--KNLIMSDGS--------------- 149 (262)
T ss_pred ccceeeccceEEEEEeccceeEEEChHHh--hhhcccccCCc----ceeeecCC--cceEeeCCc---------------
Confidence 2222332678898877777 578888752 222111 1111 23566665 468887754
Q ss_pred CCCceEEEEeCCCCc----eEEeecC--CCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC------
Q 019290 178 DRSGRLLKYDPLKKN----VTVMYNG--LSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM------ 245 (343)
Q Consensus 178 ~~~~~v~~~d~~~~~----~~~~~~~--~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~------ 245 (343)
..+...||++-. +.+-..+ ....|.+.+- || .+|..-....+|.|++++. ++.....+.
T Consensus 150 ---atL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG-~lyANVw~t~~I~rI~p~s----GrV~~widlS~L~~~ 220 (262)
T COG3823 150 ---ATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DG-ELYANVWQTTRIARIDPDS----GRVVAWIDLSGLLKE 220 (262)
T ss_pred ---eEEEecCHHHhhhcceEEEEECCeecccccceeee-cc-EEEEeeeeecceEEEcCCC----CcEEEEEEccCCchh
Confidence 346666665321 1111111 1233444442 44 3676666677888888775 222222211
Q ss_pred -------CCCCCceeeCCCC-CEEEEec
Q 019290 246 -------PRFPDNIKSDSKG-EFWIAMN 265 (343)
Q Consensus 246 -------~~~p~~i~~d~~G-~lwi~~~ 265 (343)
...++||+.|+++ +++++.-
T Consensus 221 ~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 221 LNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred cCccccccccccceeecCcCCeEEEecC
Confidence 1246788888875 7888753
No 160
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.96 E-value=0.024 Score=55.38 Aligned_cols=152 Identities=18% Similarity=0.086 Sum_probs=101.6
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
...+++.|.-++.+.++..+|-+..||.+++.+..=. .....+.++..+...+-+-++..
T Consensus 495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l--------------------~l~~~~~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL--------------------RLGSSITGIVYHRVSDLLAIALD 554 (910)
T ss_pred ceeEEEecCCCceEEEccCcceEEEEecCCcceeeee--------------------ccCCCcceeeeeehhhhhhhhcC
Confidence 4679999999997888888888888888775422100 11223456777763444444444
Q ss_pred CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290 116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV 195 (343)
Q Consensus 116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 195 (343)
...|..+|..|.++.+..... .+.++++.+.+ ||+=.++..- .+.|..||..++....
T Consensus 555 df~I~vvD~~t~kvvR~f~gh----~nritd~~FS~-DgrWlisasm-----------------D~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGH----GNRITDMTFSP-DGRWLISASM-----------------DSTIRTWDLPTGTLID 612 (910)
T ss_pred ceeEEEEEchhhhhhHHhhcc----ccceeeeEeCC-CCcEEEEeec-----------------CCcEEEEeccCcceee
Confidence 567999999887765543322 25689999999 5774343321 4568889988776543
Q ss_pred eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEE
Q 019290 196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFW 229 (343)
Q Consensus 196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~ 229 (343)
...--.....+.++|+|..|-.+.....+||.|.
T Consensus 613 ~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 613 GLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 2222234567889999999888888778999886
No 161
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.95 E-value=0.2 Score=42.75 Aligned_cols=184 Identities=14% Similarity=0.180 Sum_probs=103.3
Q ss_pred CCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290 34 VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA 113 (343)
Q Consensus 34 ~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~ 113 (343)
....+++++..+|..+-.+..+..+..++.....+.. ...++ .....+..++.++....++.+
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~---~~~~~--------------gh~~svdql~w~~~~~d~~at 82 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK---ELVYR--------------GHTDSVDQLCWDPKHPDLFAT 82 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhh---hhccc--------------CCCcchhhheeCCCCCcceEE
Confidence 3468999999999988888888887777765432211 00000 011122345555534445544
Q ss_pred eCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290 114 DAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN 192 (343)
Q Consensus 114 ~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 192 (343)
..+ ..+.++|.++++-........+ =.-+...|.++.+.+++. ...|..+|..+.+
T Consensus 83 as~dk~ir~wd~r~~k~~~~i~~~~e-----ni~i~wsp~g~~~~~~~k------------------dD~it~id~r~~~ 139 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKCTARIETKGE-----NINITWSPDGEYIAVGNK------------------DDRITFIDARTYK 139 (313)
T ss_pred ecCCceEEEEEeccCcEEEEeeccCc-----ceEEEEcCCCCEEEEecC------------------cccEEEEEecccc
Confidence 333 4488999887764432221111 123556664344444332 4567777765444
Q ss_pred eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCc---eeeCCCCCEEEEe
Q 019290 193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDN---IKSDSKGEFWIAM 264 (343)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~---i~~d~~G~lwi~~ 264 (343)
...-.+-....+.+++..++ .+++..+..|+|..+.... .+.+..+..+|.+ +.+||+|+.+...
T Consensus 140 ~~~~~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsyps------Lkpv~si~AH~snCicI~f~p~GryfA~G 207 (313)
T KOG1407|consen 140 IVNEEQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPS------LKPVQSIKAHPSNCICIEFDPDGRYFATG 207 (313)
T ss_pred eeehhcccceeeeeeecCCC-CEEEEecCCceEEEEeccc------cccccccccCCcceEEEEECCCCceEeec
Confidence 33222223446778887554 4777777778988877532 2333334445544 5679999766554
No 162
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.95 E-value=0.24 Score=43.43 Aligned_cols=173 Identities=17% Similarity=0.144 Sum_probs=95.0
Q ss_pred CCCeeEEEecCCEEEEEEcCCC-CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC--CeEEEEeCCCe-EE
Q 019290 45 NGEGPYVGVSDGRILKWKAANS-GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT--CDLYIADAYFG-LM 120 (343)
Q Consensus 45 ~g~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~--~~l~v~~~~~g-i~ 120 (343)
+|..+..+..+..|..||..+. +...+. ...+..+.+.|...- ..|.-+ ..+| |.
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~qlg~ll--------------------~HagsitaL~F~~~~S~shLlS~-sdDG~i~ 110 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQLGILL--------------------SHAGSITALKFYPPLSKSHLLSG-SDDGHII 110 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhhhccee--------------------ccccceEEEEecCCcchhheeee-cCCCcEE
Confidence 4554456677889999998653 222111 122345566666521 256666 4566 66
Q ss_pred EEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCC
Q 019290 121 VVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGL 200 (343)
Q Consensus 121 ~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 200 (343)
.++.. .+..+- ...... ..++++++.|. |+|-++... .+.+..+|.-.|+......-.
T Consensus 111 iw~~~--~W~~~~-slK~H~-~~Vt~lsiHPS-~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~ 168 (362)
T KOG0294|consen 111 IWRVG--SWELLK-SLKAHK-GQVTDLSIHPS-GKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLK 168 (362)
T ss_pred EEEcC--CeEEee-eecccc-cccceeEecCC-CceEEEEcC-----------------CceeeeehhhcCccceeeccC
Confidence 66654 344332 211212 34899999995 999887654 334555565444433222222
Q ss_pred CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290 201 SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 201 ~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
..+.-+.+++.|.+.++.. .++|-.|.++....+.+ ...+-.+-.+.++..+.+.++..+
T Consensus 169 ~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~~~----i~~~~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 169 NKATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVFRE----IENPKRILCATFLDGSELLVGGDN 228 (362)
T ss_pred CcceeeEEcCCCCEEEEEe--ccEEEEEecccHhHhhh----hhccccceeeeecCCceEEEecCC
Confidence 3345578889998777765 46787787654221111 112222444555666777777544
No 163
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.04 Score=47.62 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=44.3
Q ss_pred CccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec------CC-CCcceeEEecCC
Q 019290 140 PFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN------GL-SFPNGVALSNNN 212 (343)
Q Consensus 140 ~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~------~~-~~~~~i~~~~d~ 212 (343)
...++..+++++ ||++|++.+.. +. .+...-+.-.-..++.++.+.- .+ ...-.|++..+.
T Consensus 224 ~~lSiRHld~g~-dgtvwfgcQy~--G~---------~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~ 291 (366)
T COG3490 224 RQLSIRHLDIGR-DGTVWFGCQYR--GP---------RNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRD 291 (366)
T ss_pred hhcceeeeeeCC-CCcEEEEEEee--CC---------CccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccC
Confidence 346678899999 69999987541 00 0000012222222222222110 01 123457777666
Q ss_pred CEEEEEEcCCCeEEEEEccC
Q 019290 213 SFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 213 ~~lyv~~~~~~~i~~~~~~~ 232 (343)
+.+-++...+++...||.++
T Consensus 292 glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 292 GLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred CeEEEecCCCCeEEEEEcCC
Confidence 66666777788888999776
No 164
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.87 E-value=0.014 Score=54.97 Aligned_cols=120 Identities=20% Similarity=0.248 Sum_probs=73.5
Q ss_pred cCCeeeEEEeCCCCeEEEEeCCC-----------------eEEEEeCCCC-------eEEEcccccCC------------
Q 019290 95 CGRPLGIKFNPVTCDLYIADAYF-----------------GLMVVGPNGG-------QAQQLASSAGG------------ 138 (343)
Q Consensus 95 ~~~p~gi~~~~~~~~l~v~~~~~-----------------gi~~~d~~~~-------~~~~~~~~~~~------------ 138 (343)
..+|.++++.+..+.+|++.+.+ +|+++-+.++ ++..+......
T Consensus 416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~ 495 (616)
T COG3211 416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN 495 (616)
T ss_pred ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence 44789999999778899985432 3888877655 44443321111
Q ss_pred -CCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCC--CCcceeEEecCCCEE
Q 019290 139 -IPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGL--SFPNGVALSNNNSFL 215 (343)
Q Consensus 139 -~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~i~~~~d~~~l 215 (343)
.-+..|..|++|+. |+||+.+..+.-...+.. .+ -..+..=++.+++++++.... ....|.+|+||++++
T Consensus 496 ~~~f~~PDnl~fD~~-GrLWi~TDg~~s~~~~~~----~G--~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~Tl 568 (616)
T COG3211 496 ANWFNSPDNLAFDPW-GRLWIQTDGSGSTLRNRF----RG--VTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTL 568 (616)
T ss_pred cccccCCCceEECCC-CCEEEEecCCCCccCccc----cc--ccccccCCCccceeeeeccCCCcceeecceeCCCCceE
Confidence 11455889999994 999998765321110000 00 012223355666676665443 356899999999999
Q ss_pred EEEEcC
Q 019290 216 LLAESA 221 (343)
Q Consensus 216 yv~~~~ 221 (343)
+|.-..
T Consensus 569 FV~vQH 574 (616)
T COG3211 569 FVNVQH 574 (616)
T ss_pred EEEecC
Confidence 987543
No 165
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.86 E-value=0.28 Score=43.06 Aligned_cols=247 Identities=15% Similarity=0.155 Sum_probs=128.4
Q ss_pred cccccCCCCCCCceEEEcCCCCeeEE-EecCCEEEEEEcC--C----CCeEEeeecCCCccccccCCCCCcccCCCcCCe
Q 019290 26 YQQLQLPGVVGPESLAFDCNGEGPYV-GVSDGRILKWKAA--N----SGWTEFATTAPHRAREICDGSTNTTLEPLCGRP 98 (343)
Q Consensus 26 ~~~~~~~~~~~p~~l~~d~~g~~l~~-~~~~g~i~~~d~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 98 (343)
..+...|.+.+|.+|++.+.+. +|+ +...+..-.||.+ + ..-..+....... ....+.|
T Consensus 14 ~A~~tDp~L~N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~-------------~~~~~~P 79 (336)
T TIGR03118 14 AAQIVDPGLRNAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP-------------LAAEGTP 79 (336)
T ss_pred cccccCccccccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCC-------------CCCCCCc
Confidence 4566778888999999999998 665 4455555666664 1 1111222111000 0123468
Q ss_pred eeEEEeCCCCeEEEEeCC---CeEEEEeCCCCeEEEccccc-------------CCCCccCcceeEEeCC--CCeEEEEe
Q 019290 99 LGIKFNPVTCDLYIADAY---FGLMVVGPNGGQAQQLASSA-------------GGIPFRFTNDLDIDPN--TGIVYFTD 160 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~~~---~gi~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~i~~d~~--dg~l~v~~ 160 (343)
.|+.+.. ....-|.... ...+.+-.+.|.+.-+.... .+.....-.++++-.. .+.||.++
T Consensus 80 TGiVfN~-~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaad 158 (336)
T TIGR03118 80 TGQVFNG-SDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAAN 158 (336)
T ss_pred cEEEEeC-CCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEec
Confidence 8888885 3333232111 12345555666555443211 0111122234554421 25677766
Q ss_pred CCcccccccceeeeeecCCCceEEEEeCCCCceEEeec--------CCCCcceeEEecCCCEEEEEEcC-----------
Q 019290 161 SSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN--------GLSFPNGVALSNNNSFLLLAESA----------- 221 (343)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------~~~~~~~i~~~~d~~~lyv~~~~----------- 221 (343)
-. .++|-.||..=..+. +.. ....|..|.-- +..|||+-..
T Consensus 159 F~-----------------~g~IDVFd~~f~~~~-~~g~F~DP~iPagyAPFnIqni--g~~lyVtYA~qd~~~~d~v~G 218 (336)
T TIGR03118 159 FR-----------------QGRIDVFKGSFRPPP-LPGSFIDPALPAGYAPFNVQNL--GGTLYVTYAQQDADRNDEVAG 218 (336)
T ss_pred cC-----------------CCceEEecCcccccc-CCCCccCCCCCCCCCCcceEEE--CCeEEEEEEecCCcccccccC
Confidence 54 456666663211111 111 11224444332 4568886432
Q ss_pred --CCeEEEEEccCccccccceeeec---CCCCCCceeeCC------CCCEEEEeccCCCccccccccccccccCCCcccC
Q 019290 222 --TLKILRFWLQGERTTYTPQLFAE---MPRFPDNIKSDS------KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLR 290 (343)
Q Consensus 222 --~~~i~~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~------~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (343)
.+-|-+|++++.- .+.+.. ++ .|=+|++.| .|.|.|+...
T Consensus 219 ~G~G~VdvFd~~G~l----~~r~as~g~LN-aPWG~a~APa~FG~~sg~lLVGNFG------------------------ 269 (336)
T TIGR03118 219 AGLGYVNVFTLNGQL----LRRVASSGRLN-APWGLAIAPESFGSLSGALLVGNFG------------------------ 269 (336)
T ss_pred CCcceEEEEcCCCcE----EEEeccCCccc-CCceeeeChhhhCCCCCCeEEeecC------------------------
Confidence 2456667766632 233332 22 377777633 5779999877
Q ss_pred CCeEEEECC-CCCEEEEeeCCCCCccC--CceeEEE-------eCCEEEEecCCCC
Q 019290 291 DPVGVKFDV-NGNVVDVLDGNEGNTLN--SVSEVQE-------YGEYLYTGSSVQP 336 (343)
Q Consensus 291 ~~~v~~~d~-~g~~~~~~~~~~~~~~~--~~~~~~~-------~~g~l~i~~~~~~ 336 (343)
.+.|..||+ .|+.+..+..+++.... ....+.. ..+.||++.-..+
T Consensus 270 DG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~d 325 (336)
T TIGR03118 270 DGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPDD 325 (336)
T ss_pred CceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCCC
Confidence 568899998 48888887766663222 1122221 1357888766544
No 166
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.86 E-value=0.077 Score=52.56 Aligned_cols=156 Identities=15% Similarity=0.158 Sum_probs=93.8
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC
Q 019290 38 ESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF 117 (343)
Q Consensus 38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~ 117 (343)
.+++++-+|+.+-++..+-.|-.++..+....... ....+.+.++.+++ ++.++.....+
T Consensus 100 r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l-------------------rgh~apVl~l~~~p-~~~fLAvss~d 159 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL-------------------RGHDAPVLQLSYDP-KGNFLAVSSCD 159 (933)
T ss_pred eEEEEecCCcEEEeecCceeEEEEeccccchheee-------------------cccCCceeeeeEcC-CCCEEEEEecC
Confidence 68899999995566666766777666543322221 12334467899999 66655554567
Q ss_pred e-EEEEeCCCCeEEEcccccC----CCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290 118 G-LMVVGPNGGQAQQLASSAG----GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN 192 (343)
Q Consensus 118 g-i~~~d~~~~~~~~~~~~~~----~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 192 (343)
| |..++++++.......... ......+..++..|+.|.+.+.-. .+.|-.|++++.+
T Consensus 160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~------------------d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV------------------DNTVKVYSRKGWE 221 (933)
T ss_pred ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc------------------CCeEEEEccCCce
Confidence 7 8899998876543322111 111234566788884345444221 3457777766443
Q ss_pred eE-EeecCC--CCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 193 VT-VMYNGL--SFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 193 ~~-~~~~~~--~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.. .+..+. +....+.++|.|.+| .+.+.++.|.+|+.+.
T Consensus 222 ~~f~Lr~~~~ss~~~~~~wsPnG~Yi-AAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 222 LQFKLRDKLSSSKFSDLQWSPNGKYI-AASTLDGQILVWNVDT 263 (933)
T ss_pred eheeecccccccceEEEEEcCCCcEE-eeeccCCcEEEEeccc
Confidence 32 121221 236788899998754 4556789999999874
No 167
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.83 E-value=0.36 Score=45.37 Aligned_cols=135 Identities=16% Similarity=0.142 Sum_probs=74.6
Q ss_pred EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe---EEEEeCCCCeEEEcc
Q 019290 57 RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG---LMVVGPNGGQAQQLA 133 (343)
Q Consensus 57 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g---i~~~d~~~~~~~~~~ 133 (343)
+++.++.+++....+.... +......+.+++..|.++...+| ||.+|..++....+.
T Consensus 219 ~i~~~~l~~g~~~~i~~~~--------------------g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt 278 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFN--------------------GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLT 278 (425)
T ss_pred eEEEEeccCCccceeeccC--------------------CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecc
Confidence 5888888776554443211 11122345664556666544444 999999887755532
Q ss_pred cccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCC
Q 019290 134 SSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNS 213 (343)
Q Consensus 134 ~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~ 213 (343)
.. .+ ...-- .+.|++..++++... .+.-.||+++.+++..+++.........-.+++||+
T Consensus 279 ~~-~g--i~~~P--s~spdG~~ivf~Sdr---------------~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 279 NG-FG--INTSP--SWSPDGSKIVFTSDR---------------GGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred cC-Cc--cccCc--cCCCCCCEEEEEeCC---------------CCCcceEEECCCCCceeEeeccCCCCcCccCCCCCC
Confidence 21 11 11111 233421345554322 123479999999888777665544444556789999
Q ss_pred EEEEEEcCCCe--EEEEEcc
Q 019290 214 FLLLAESATLK--ILRFWLQ 231 (343)
Q Consensus 214 ~lyv~~~~~~~--i~~~~~~ 231 (343)
.+.+.....+. |..+++.
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred EEEEEeccCCceeeEEeccC
Confidence 87776644444 5555544
No 168
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.83 E-value=0.16 Score=46.03 Aligned_cols=186 Identities=18% Similarity=0.206 Sum_probs=95.9
Q ss_pred CCceEEEcCCCCeeEEEecCCE------EEEEEcCC--CCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGR------ILKWKAAN--SGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT 107 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~------i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~ 107 (343)
.-.+|++++++..+|+-+.++. +|.+.... +....+...... .+.+.. +........-+.+|++.+ +
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~L~~~~-G~~~~~~~~D~Egi~~~~-~ 95 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMI---PLRDPD-GQPFPKNGLDPEGIAVPP-D 95 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccce---eccCCC-CCcCCcCCCChhHeEEec-C
Confidence 4578999976565887667666 77665432 111111100000 000000 000001111356899965 8
Q ss_pred CeEEEEeCCC-------eEEEEeCCCCeE-EEc--ccc--------cCCCCccCcceeEEeCCCCe-EEEEeCCcccccc
Q 019290 108 CDLYIADAYF-------GLMVVGPNGGQA-QQL--ASS--------AGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRR 168 (343)
Q Consensus 108 ~~l~v~~~~~-------gi~~~d~~~~~~-~~~--~~~--------~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~ 168 (343)
+.+||++.+. .|++++.+ |++ +.+ ... ........+-++++.+ ||+ ||++..+...+
T Consensus 96 g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~l~~-- 171 (326)
T PF13449_consen 96 GSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESPLKQ-- 171 (326)
T ss_pred CCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECccccC--
Confidence 9999997655 49999988 544 333 111 1112345678999999 577 88876542110
Q ss_pred cceeeeeecCCCceEEEEeCCC-Cc-eEEee---c------CCCCcceeEEecCCCEEEEEEcC-------CCeEEEEEc
Q 019290 169 QYFMSIATGDRSGRLLKYDPLK-KN-VTVMY---N------GLSFPNGVALSNNNSFLLLAESA-------TLKILRFWL 230 (343)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~d~~~-~~-~~~~~---~------~~~~~~~i~~~~d~~~lyv~~~~-------~~~i~~~~~ 230 (343)
+-...-.......++++||+.+ +. ...+. . ....+..++..++++ +++.+.. ..+|+++++
T Consensus 172 d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 172 DGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred CCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceEEEEEEEc
Confidence 0000000011125688898865 21 22211 1 233455666667776 6776654 356666665
Q ss_pred c
Q 019290 231 Q 231 (343)
Q Consensus 231 ~ 231 (343)
.
T Consensus 251 ~ 251 (326)
T PF13449_consen 251 S 251 (326)
T ss_pred c
Confidence 4
No 169
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.79 E-value=0.23 Score=48.62 Aligned_cols=181 Identities=13% Similarity=0.112 Sum_probs=107.9
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEEcCCCCe-EEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290 38 ESLAFDCNGEGPYVGVSDGRILKWKAANSGW-TEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY 116 (343)
Q Consensus 38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~ 116 (343)
-+|.+..++. |..+..+..+-.|++..++. ..|. ....+..++|+|.+++.+++..-
T Consensus 373 LDlSWSKn~f-LLSSSMDKTVRLWh~~~~~CL~~F~---------------------HndfVTcVaFnPvDDryFiSGSL 430 (712)
T KOG0283|consen 373 LDLSWSKNNF-LLSSSMDKTVRLWHPGRKECLKVFS---------------------HNDFVTCVAFNPVDDRYFISGSL 430 (712)
T ss_pred eecccccCCe-eEeccccccEEeecCCCcceeeEEe---------------------cCCeeEEEEecccCCCcEeeccc
Confidence 3556666666 77788888888888876553 3332 22356789999988888887665
Q ss_pred Ce-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEE-EeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290 117 FG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYF-TDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT 194 (343)
Q Consensus 117 ~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 194 (343)
+| +..++....++..+.... ..+..+++.| ||...| +.. .|....|+..+.++.
T Consensus 431 D~KvRiWsI~d~~Vv~W~Dl~-----~lITAvcy~P-dGk~avIGt~------------------~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 431 DGKVRLWSISDKKVVDWNDLR-----DLITAVCYSP-DGKGAVIGTF------------------NGYCRFYDTEGLKLV 486 (712)
T ss_pred ccceEEeecCcCeeEeehhhh-----hhheeEEecc-CCceEEEEEe------------------ccEEEEEEccCCeEE
Confidence 66 888888777777665432 3578889999 476444 332 445556665544432
Q ss_pred E---e--ec----CCCCcceeEEecCC-CEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEe
Q 019290 195 V---M--YN----GLSFPNGVALSNNN-SFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM 264 (343)
Q Consensus 195 ~---~--~~----~~~~~~~i~~~~d~-~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~ 264 (343)
. + .. ......|+.+.|.. ..+.|+ +++.+|..||......+..++-+..... ...-.+..||+-.|+.
T Consensus 487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT-SnDSrIRI~d~~~~~lv~KfKG~~n~~S-Q~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT-SNDSRIRIYDGRDKDLVHKFKGFRNTSS-QISASFSSDGKHIVSA 564 (712)
T ss_pred EeeeEeeccCccccCceeeeeEecCCCCCeEEEe-cCCCceEEEeccchhhhhhhcccccCCc-ceeeeEccCCCEEEEe
Confidence 1 0 10 01246777776432 246666 4678999999643222122222222111 1122356688777776
Q ss_pred cc
Q 019290 265 NS 266 (343)
Q Consensus 265 ~~ 266 (343)
..
T Consensus 565 se 566 (712)
T KOG0283|consen 565 SE 566 (712)
T ss_pred ec
Confidence 65
No 170
>PHA03098 kelch-like protein; Provisional
Probab=96.78 E-value=0.32 Score=47.37 Aligned_cols=189 Identities=4% Similarity=-0.022 Sum_probs=96.4
Q ss_pred EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC------CeEEEEeCCCCeEE
Q 019290 57 RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY------FGLMVVGPNGGQAQ 130 (343)
Q Consensus 57 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~------~gi~~~d~~~~~~~ 130 (343)
.++.||+.+..|......+ .. ..-++++.. ++.||+.... +.+.+||+.+.+++
T Consensus 312 ~v~~yd~~~~~W~~~~~~~-----------------~~-R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELI-----------------YP-RKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred cEEEEeCCCCeeeECCCCC-----------------cc-cccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 5889999998887653211 00 111344444 5778876332 23788999988887
Q ss_pred EcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCc--ceeEE
Q 019290 131 QLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFP--NGVAL 208 (343)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~~i~~ 208 (343)
......... .-..++.- +|.+|+...... .......+++||+.+++++......... ...+.
T Consensus 372 ~~~~lp~~r---~~~~~~~~--~~~iYv~GG~~~-----------~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 435 (534)
T PHA03098 372 EEPPLIFPR---YNPCVVNV--NNLIYVIGGISK-----------NDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY 435 (534)
T ss_pred eCCCcCcCC---ccceEEEE--CCEEEEECCcCC-----------CCcccceEEEEeCCCCeeeecCCCCccccCceEEE
Confidence 765433221 11223333 379998533100 0011246899999888776543211111 12222
Q ss_pred ecCCCEEEEEEcC--------CCeEEEEEccCccccccceeeecCC--CCCCceeeCCCCCEEEEeccCCCccccccccc
Q 019290 209 SNNNSFLLLAESA--------TLKILRFWLQGERTTYTPQLFAEMP--RFPDNIKSDSKGEFWIAMNSARGKIESNKKTA 278 (343)
Q Consensus 209 ~~d~~~lyv~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~--~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~ 278 (343)
. ++.+|+..-. -..+++||+.. .+...+...+ ....+++. -+|+||+.........
T Consensus 436 -~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~----~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~------- 501 (534)
T PHA03098 436 -H-DGKIYVIGGISYIDNIKVYNIVESYNPVT----NKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYY------- 501 (534)
T ss_pred -E-CCEEEEECCccCCCCCcccceEEEecCCC----CceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcc-------
Confidence 2 3457876421 12388888765 2222222211 11112222 2678888754311111
Q ss_pred cccccCCCcccCCCeEEEECCCCCEEEEe
Q 019290 279 FCEETAKPWFLRDPVGVKFDVNGNVVDVL 307 (343)
Q Consensus 279 ~~~~~~~~~~~~~~~v~~~d~~g~~~~~~ 307 (343)
...+.+||++.+.=..+
T Consensus 502 ------------~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 502 ------------INEIEVYDDKTNTWTLF 518 (534)
T ss_pred ------------cceeEEEeCCCCEEEec
Confidence 23688899876543333
No 171
>PHA02790 Kelch-like protein; Provisional
Probab=96.74 E-value=0.46 Score=45.59 Aligned_cols=160 Identities=7% Similarity=-0.044 Sum_probs=86.8
Q ss_pred EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC---CeEEEEeCCCCeEEEcc
Q 019290 57 RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY---FGLMVVGPNGGQAQQLA 133 (343)
Q Consensus 57 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~---~gi~~~d~~~~~~~~~~ 133 (343)
.+++||+.+..|..++... .. ..-.+.+.. ++.||+.... ..+.++|+.++++..++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~-----------------~~-r~~~~~v~~--~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMN-----------------SP-RLYASGVPA--NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred eEEEEECCCCEEEECCCCC-----------------ch-hhcceEEEE--CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 5889999988887764211 00 011233333 6789987432 23889999888887765
Q ss_pred cccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCc---ceeEEec
Q 019290 134 SSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFP---NGVALSN 210 (343)
Q Consensus 134 ~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~i~~~~ 210 (343)
...... .-..++.- +|.||+.-... .. ...+.+||+.+.+++.... ...+ .+.+. -
T Consensus 348 ~l~~~r---~~~~~~~~--~g~IYviGG~~-------------~~-~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~-~ 406 (480)
T PHA02790 348 SLLKPR---CNPAVASI--NNVIYVIGGHS-------------ET-DTTTEYLLPNHDQWQFGPS-TYYPHYKSCALV-F 406 (480)
T ss_pred CCCCCC---cccEEEEE--CCEEEEecCcC-------------CC-CccEEEEeCCCCEEEeCCC-CCCccccceEEE-E
Confidence 543221 11233333 48999854320 01 2357889998888765432 2222 12222 2
Q ss_pred CCCEEEEEEcCCCeEEEEEccCccccccceeeecCCC--CCCceeeCCCCCEEEEecc
Q 019290 211 NNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPR--FPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 211 d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~p~~i~~d~~G~lwi~~~~ 266 (343)
++.+|+.. +...+|++.. .....+...+. .-.++++ -+|+||+....
T Consensus 407 -~~~IYv~G---G~~e~ydp~~----~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~ 455 (480)
T PHA02790 407 -GRRLFLVG---RNAEFYCESS----NTWTLIDDPIYPRDNPELII-VDNKLLLIGGF 455 (480)
T ss_pred -CCEEEEEC---CceEEecCCC----CcEeEcCCCCCCccccEEEE-ECCEEEEECCc
Confidence 34688874 4577888764 33333332221 1112332 26789988643
No 172
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=96.67 E-value=0.13 Score=47.87 Aligned_cols=228 Identities=11% Similarity=0.070 Sum_probs=124.6
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCe--eeEEEeCCCCeEEEEe
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRP--LGIKFNPVTCDLYIAD 114 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~gi~~~~~~~~l~v~~ 114 (343)
-++-...+||+-|.++.....+-.||...... ++.. +.....| ..+++++ +-.+.|+.
T Consensus 468 iRSckL~pdgrtLivGGeastlsiWDLAapTp-rika------------------eltssapaCyALa~sp-DakvcFsc 527 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP-RIKA------------------ELTSSAPACYALAISP-DAKVCFSC 527 (705)
T ss_pred eeeeEecCCCceEEeccccceeeeeeccCCCc-chhh------------------hcCCcchhhhhhhcCC-ccceeeee
Confidence 34455567888777776777788888754221 1110 0111122 2466777 66677776
Q ss_pred CCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290 115 AYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN 192 (343)
Q Consensus 115 ~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 192 (343)
..+| |.++|+....+.+-.+... .....|.+.+ || +||-+. ..+.|.+||...+.
T Consensus 528 csdGnI~vwDLhnq~~VrqfqGht----DGascIdis~-dGtklWTGG------------------lDntvRcWDlregr 584 (705)
T KOG0639|consen 528 CSDGNIAVWDLHNQTLVRQFQGHT----DGASCIDISK-DGTKLWTGG------------------LDNTVRCWDLREGR 584 (705)
T ss_pred ccCCcEEEEEcccceeeecccCCC----CCceeEEecC-CCceeecCC------------------Cccceeehhhhhhh
Confidence 6666 8899997654433322221 2356677777 45 466632 24568889876543
Q ss_pred eEEeecCC-CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCcc
Q 019290 193 VTVMYNGL-SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKI 271 (343)
Q Consensus 193 ~~~~~~~~-~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~ 271 (343)
.- ...++ +....+-..|.++.|- ..+.++.+++....+..+ . .+...+.-.-.+.+..-|+.|+++.. -+
T Consensus 585 ql-qqhdF~SQIfSLg~cP~~dWla-vGMens~vevlh~skp~k---y-qlhlheScVLSlKFa~cGkwfvStGk-Dn-- 655 (705)
T KOG0639|consen 585 QL-QQHDFSSQIFSLGYCPTGDWLA-VGMENSNVEVLHTSKPEK---Y-QLHLHESCVLSLKFAYCGKWFVSTGK-DN-- 655 (705)
T ss_pred hh-hhhhhhhhheecccCCCcccee-eecccCcEEEEecCCccc---e-eecccccEEEEEEecccCceeeecCc-hh--
Confidence 21 11122 2244555567777554 457788899888665322 1 11111111223566788999998865 22
Q ss_pred ccccccccccccCCCcccCCCeEEEE-CCCCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290 272 ESNKKTAFCEETAKPWFLRDPVGVKF-DVNGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK 342 (343)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~v~~~-d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~ 342 (343)
.+-.+ .|-|..+. ..++ ...+..|-.. ++++.+++.......+|.
T Consensus 656 ---------------------lLnawrtPyGasiF--qskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 656 ---------------------LLNAWRTPYGASIF--QSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred ---------------------hhhhccCcccccee--eccc---cCcceeeeeccCceEEEecCCCcceEEEE
Confidence 22233 25554433 3222 2345555444 777777777776666663
No 173
>PHA02713 hypothetical protein; Provisional
Probab=96.59 E-value=0.47 Score=46.38 Aligned_cols=198 Identities=8% Similarity=0.015 Sum_probs=92.7
Q ss_pred eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290 118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY 197 (343)
Q Consensus 118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 197 (343)
.+..||+.++++..+....... .-..+++- ++.+|+...... .......+++||+.++.+..+.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r---~~~~~a~l--~~~IYviGG~~~-----------~~~~~~~v~~Yd~~~n~W~~~~ 336 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHI---INYASAIV--DNEIIIAGGYNF-----------NNPSLNKVYKINIENKIHVELP 336 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccc---cceEEEEE--CCEEEEEcCCCC-----------CCCccceEEEEECCCCeEeeCC
Confidence 3788999998888775443221 11233443 378998543100 0011346999999888776543
Q ss_pred cCCCCc---ceeEEecCCCEEEEEEcCC-----CeEEEEEccCccccccceeeecCCCCC--CceeeCCCCCEEEEeccC
Q 019290 198 NGLSFP---NGVALSNNNSFLLLAESAT-----LKILRFWLQGERTTYTPQLFAEMPRFP--DNIKSDSKGEFWIAMNSA 267 (343)
Q Consensus 198 ~~~~~~---~~i~~~~d~~~lyv~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~p--~~i~~d~~G~lwi~~~~~ 267 (343)
. +..+ .+++.. + +.+|+..-.+ ..+.+|++.. .+.......+... .+.+ --+|+||+.....
T Consensus 337 ~-m~~~R~~~~~~~~-~-g~IYviGG~~~~~~~~sve~Ydp~~----~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~ 408 (557)
T PHA02713 337 P-MIKNRCRFSLAVI-D-DTIYAIGGQNGTNVERTIECYTMGD----DKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRT 408 (557)
T ss_pred C-CcchhhceeEEEE-C-CEEEEECCcCCCCCCceEEEEECCC----CeEEECCCCCcccccccEE-EECCEEEEEeCCC
Confidence 2 2211 233332 3 4588864322 3588888765 2222322222101 1122 2368899875431
Q ss_pred CCccccccccccccccCCCcccCCCeEEEECCCCCE-EEEeeCCCCCccCCceeEEEeCCEEEEecCCC------CeEEE
Q 019290 268 RGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNV-VDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQ------PYVVV 340 (343)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~------~~i~~ 340 (343)
...... .......+...+.......+.+|||..+. ...-+.+.. .....+..-+|+||+.+... +.+-+
T Consensus 409 ~~~~~~-~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~---r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~ 484 (557)
T PHA02713 409 EHIDYT-SVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG---TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFR 484 (557)
T ss_pred cccccc-cccccccccccccccccceEEEECCCCCeEeecCCCCcc---cccCcEEEECCEEEEEeCCCCCCccceeEEE
Confidence 110000 00000000000000002468899996543 332222222 12233444589999765432 35678
Q ss_pred EcC
Q 019290 341 IKA 343 (343)
Q Consensus 341 ~~~ 343 (343)
|||
T Consensus 485 Ydp 487 (557)
T PHA02713 485 YNT 487 (557)
T ss_pred ecC
Confidence 875
No 174
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.58 E-value=0.28 Score=45.41 Aligned_cols=221 Identities=10% Similarity=0.065 Sum_probs=93.8
Q ss_pred CCCCCceEEEcCCCCeeEEEe------cCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290 33 GVVGPESLAFDCNGEGPYVGV------SDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV 106 (343)
Q Consensus 33 ~~~~p~~l~~d~~g~~l~~~~------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~ 106 (343)
++..|+.+---++|+++.++. .-|+++.+|.+|-++..--... ...........+.+
T Consensus 128 g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~----------------~~~~~~gYDfw~qp- 190 (461)
T PF05694_consen 128 GLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKD----------------RGPQPFGYDFWYQP- 190 (461)
T ss_dssp -EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-----------------TT------EEEET-
T ss_pred CCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccC----------------CCCCCCCCCeEEcC-
Confidence 666788888889999555331 2357888887764433211100 00011224566677
Q ss_pred CCeEEEEe---------------------CCCeEEEEeCCCCeEEEcccccCCCCccCccee--EEeCCCCeEEEEeCCc
Q 019290 107 TCDLYIAD---------------------AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDL--DIDPNTGIVYFTDSSI 163 (343)
Q Consensus 107 ~~~l~v~~---------------------~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i--~~d~~dg~l~v~~~~~ 163 (343)
..++.|++ .++.+..+|..+.+........+. ...+-.+ +.+|....=|++..-
T Consensus 191 r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~--g~~pLEvRflH~P~~~~gFvg~aL- 267 (461)
T PF05694_consen 191 RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE--GQMPLEVRFLHDPDANYGFVGCAL- 267 (461)
T ss_dssp TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT--EEEEEEEEE-SSTT--EEEEEEE--
T ss_pred CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC--CCceEEEEecCCCCccceEEEEec-
Confidence 55555553 134588999988877655443221 1123233 334432333332211
Q ss_pred ccccccceeeeeecCCCceEEEEeC-CCCceE-----Eeec---------C--------CCCcceeEEecCCCEEEEEEc
Q 019290 164 YFQRRQYFMSIATGDRSGRLLKYDP-LKKNVT-----VMYN---------G--------LSFPNGVALSNNNSFLLLAES 220 (343)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~d~-~~~~~~-----~~~~---------~--------~~~~~~i~~~~d~~~lyv~~~ 220 (343)
+..||++-. +.++.. .+.. . ...+..|.++.|.++||++..
T Consensus 268 ----------------ss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W 331 (461)
T PF05694_consen 268 ----------------SSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNW 331 (461)
T ss_dssp -----------------EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEET
T ss_pred ----------------cceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcc
Confidence 334665543 223321 1110 1 123578889999999999999
Q ss_pred CCCeEEEEEccCccccccc--eeee---------------cCCCCCCceeeCCCC-CEEEEeccCCCccccccccccccc
Q 019290 221 ATLKILRFWLQGERTTYTP--QLFA---------------EMPRFPDNIKSDSKG-EFWIAMNSARGKIESNKKTAFCEE 282 (343)
Q Consensus 221 ~~~~i~~~~~~~~~~~~~~--~~~~---------------~~~~~p~~i~~d~~G-~lwi~~~~~~~~~~~~~~~~~~~~ 282 (343)
..+.|.+||+..+.. .+. +++. .+.+-|..+.++-|| +||+++.- -+.|+.-
T Consensus 332 ~~GdvrqYDISDP~~-Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnSL---------ys~WD~q 401 (461)
T PF05694_consen 332 LHGDVRQYDISDPFN-PKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNSL---------YSAWDKQ 401 (461)
T ss_dssp TTTEEEEEE-SSTTS--EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-------------HHHHHH
T ss_pred cCCcEEEEecCCCCC-CcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEeec---------ccccccc
Confidence 999999999875422 110 1110 122336667788888 68888653 1234443
Q ss_pred cCCCcccCCCeEEEECC
Q 019290 283 TAKPWFLRDPVGVKFDV 299 (343)
Q Consensus 283 ~~~~~~~~~~~v~~~d~ 299 (343)
+...-..+.+.+.++|.
T Consensus 402 fYP~~~~~g~~m~~iDv 418 (461)
T PF05694_consen 402 FYPDGVKNGSWMLKIDV 418 (461)
T ss_dssp HSTT------EEEEEEE
T ss_pred cCCCccccccEEEEEEe
Confidence 33333334455666654
No 175
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.57 E-value=0.26 Score=44.73 Aligned_cols=110 Identities=16% Similarity=0.179 Sum_probs=62.9
Q ss_pred CcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce-EEe--ec-------------CCCCccee
Q 019290 143 FTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV-TVM--YN-------------GLSFPNGV 206 (343)
Q Consensus 143 ~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~--~~-------------~~~~~~~i 206 (343)
-+-+|++.+ +|.+|++..... .......|++++.+ |++ ..+ .. .-....++
T Consensus 86 D~Egi~~~~-~g~~~is~E~~~-----------~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~l 152 (326)
T PF13449_consen 86 DPEGIAVPP-DGSFWISSEGGR-----------TGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGL 152 (326)
T ss_pred ChhHeEEec-CCCEEEEeCCcc-----------CCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEE
Confidence 456888977 699999886510 00012679999977 444 222 11 11235789
Q ss_pred EEecCCCEEEEEEcCC---------------CeEEEEEccCccccccceeeecCC--------CCCCceeeCCCCCEEEE
Q 019290 207 ALSNNNSFLLLAESAT---------------LKILRFWLQGERTTYTPQLFAEMP--------RFPDNIKSDSKGEFWIA 263 (343)
Q Consensus 207 ~~~~d~~~lyv~~~~~---------------~~i~~~~~~~~~~~~~~~~~~~~~--------~~p~~i~~d~~G~lwi~ 263 (343)
++++||+.||++.... -+|++|+...... ...+...... ..+..++..++|+++|-
T Consensus 153 a~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~-~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 153 AVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGE-PVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred EECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCc-cceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 9999999888764432 3566677654221 1111111211 12444666778888887
Q ss_pred ecc
Q 019290 264 MNS 266 (343)
Q Consensus 264 ~~~ 266 (343)
...
T Consensus 232 ER~ 234 (326)
T PF13449_consen 232 ERD 234 (326)
T ss_pred Ecc
Confidence 654
No 176
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=96.51 E-value=0.036 Score=53.39 Aligned_cols=69 Identities=25% Similarity=0.446 Sum_probs=47.7
Q ss_pred CCCCcceeEEecCCCEEEEEEcCCC-------------------eEEEEEccCccc---cccceeeec--C---------
Q 019290 199 GLSFPNGVALSNNNSFLLLAESATL-------------------KILRFWLQGERT---TYTPQLFAE--M--------- 245 (343)
Q Consensus 199 ~~~~~~~i~~~~d~~~lyv~~~~~~-------------------~i~~~~~~~~~~---~~~~~~~~~--~--------- 245 (343)
.+..+.++.+++....+|++-+..+ .|+++++.+... ..+..++.. .
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 3566899999998888999866554 899998775311 012222221 1
Q ss_pred -------CCCCCceeeCCCCCEEEEeccC
Q 019290 246 -------PRFPDNIKSDSKGEFWIAMNSA 267 (343)
Q Consensus 246 -------~~~p~~i~~d~~G~lwi~~~~~ 267 (343)
-..||+|++|++|+|||++...
T Consensus 428 ~~~~~~~f~sPDNL~~d~~G~LwI~eD~~ 456 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPDGNLWIQEDGG 456 (524)
T ss_pred CcccCCCcCCCCceEECCCCCEEEEeCCC
Confidence 1249999999999999998763
No 177
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.50 E-value=0.013 Score=35.27 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=32.0
Q ss_pred ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 197 YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 197 ~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
......|+++++++.++.+||++...+.|++.++++
T Consensus 5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 345677999999999999999999999999999876
No 178
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.46 E-value=0.0071 Score=32.96 Aligned_cols=27 Identities=26% Similarity=0.619 Sum_probs=23.0
Q ss_pred CCcceeEEecCCCEEEEEEcCCCeEEEE
Q 019290 201 SFPNGVALSNNNSFLLLAESATLKILRF 228 (343)
Q Consensus 201 ~~~~~i~~~~d~~~lyv~~~~~~~i~~~ 228 (343)
..|.|++++++| .+|++++.+++|.+|
T Consensus 2 ~~P~gvav~~~g-~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDG-NIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCC-CEEEEECCCCEEEEC
Confidence 568999999665 599999999999875
No 179
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=96.43 E-value=0.13 Score=44.91 Aligned_cols=123 Identities=15% Similarity=0.211 Sum_probs=82.5
Q ss_pred EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEeccCCCcccc
Q 019290 194 TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNSARGKIES 273 (343)
Q Consensus 194 ~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~~~~~~~~ 273 (343)
+++.......+.+.|+|... +.++.+.+++|-.||.........++++.+... ...+.+.|.|.+.+....
T Consensus 166 RTlYDH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~-vrsiSfHPsGefllvgTd------- 236 (430)
T KOG0640|consen 166 RTLYDHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEP-VRSISFHPSGEFLLVGTD------- 236 (430)
T ss_pred eehhhccCcccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhccce-eeeEeecCCCceEEEecC-------
Confidence 34445556678999999765 667778899999999864322133445544322 456778888876555444
Q ss_pred ccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe-CCEEEEecCCCCeEEEEc
Q 019290 274 NKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY-GEYLYTGSSVQPYVVVIK 342 (343)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~ 342 (343)
...+..||.+.-+...-..|+......++.+.-. .++||++......|-..|
T Consensus 237 -----------------Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 237 -----------------HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD 289 (430)
T ss_pred -----------------CCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeec
Confidence 2366667877777666566776566677777654 899999998887776544
No 180
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.41 E-value=0.45 Score=39.60 Aligned_cols=121 Identities=14% Similarity=0.166 Sum_probs=72.7
Q ss_pred CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeE-EEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290 117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIV-YFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV 195 (343)
Q Consensus 117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 195 (343)
..++.++..+..+..+..... ..+++++..|+ |+- .+.... ....|..||.+...+..
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~----~~I~~~~WsP~-g~~favi~g~----------------~~~~v~lyd~~~~~i~~ 97 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKE----GPIHDVAWSPN-GNEFAVIYGS----------------MPAKVTLYDVKGKKIFS 97 (194)
T ss_pred EEEEEEecCCCccceeeccCC----CceEEEEECcC-CCEEEEEEcc----------------CCcccEEEcCcccEeEe
Confidence 468888776555544422111 23889999995 654 343211 13367778876444333
Q ss_pred eecCCCCcceeEEecCCCEEEEEEcC--CCeEEEEEccCccccccceeeecCC-CCCCceeeCCCCCEEEEecc
Q 019290 196 MYNGLSFPNGVALSNNNSFLLLAESA--TLKILRFWLQGERTTYTPQLFAEMP-RFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 196 ~~~~~~~~~~i~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~G~lwi~~~~ 266 (343)
+. -...+.+.++|+|+.+.++... .+.|..||... .+.+.... .....+..+|+|+.+++...
T Consensus 98 ~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~------~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 98 FG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK------KKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred ec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC------CEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 32 2456789999999988877643 46799999763 12222211 12345678999988877543
No 181
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.39 E-value=0.76 Score=42.34 Aligned_cols=205 Identities=13% Similarity=0.076 Sum_probs=105.7
Q ss_pred eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290 98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
.+.++.++ .|.+.++.+..| ||.+...+|..-.+.. +....+..+.+.. ||.++|+...
T Consensus 84 v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~----aHYQ~ITcL~fs~-dgs~iiTgsk-------------- 143 (476)
T KOG0646|consen 84 VHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLS----AHYQSITCLKFSD-DGSHIITGSK-------------- 143 (476)
T ss_pred eeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHH----hhccceeEEEEeC-CCcEEEecCC--------------
Confidence 45677777 788888765555 9999999987543321 1234577888888 6898887654
Q ss_pred cCCCceEEEEeC------C-CCceE---EeecCCCCcceeEEecCC--CEEEEEEcCCCeEEEEEccCccccccceeeec
Q 019290 177 GDRSGRLLKYDP------L-KKNVT---VMYNGLSFPNGVALSNNN--SFLLLAESATLKILRFWLQGERTTYTPQLFAE 244 (343)
Q Consensus 177 ~~~~~~v~~~d~------~-~~~~~---~~~~~~~~~~~i~~~~d~--~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 244 (343)
.+.|..|.. . ++.+. .+.........+.+.+.| ..|| +.+.+..+..|++.....+. .+ .
T Consensus 144 ---Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~-TaS~D~t~k~wdlS~g~LLl---ti-~ 215 (476)
T KOG0646|consen 144 ---DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY-TASEDRTIKLWDLSLGVLLL---TI-T 215 (476)
T ss_pred ---CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE-EecCCceEEEEEeccceeeE---EE-e
Confidence 344444432 1 11111 111111223444444321 2344 44567889999987522111 11 1
Q ss_pred CCCCCCceeeCCCC-CEEEEeccCCCccc--cccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeE
Q 019290 245 MPRFPDNIKSDSKG-EFWIAMNSARGKIE--SNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEV 321 (343)
Q Consensus 245 ~~~~p~~i~~d~~G-~lwi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~ 321 (343)
.+..+..+++|+.+ .+|+++.. +..+. .+....+.. +.-...++.++..+..+-...+ -..++..
T Consensus 216 fp~si~av~lDpae~~~yiGt~~-G~I~~~~~~~~~~~~~---------~v~~k~~~~~~t~~~~~~Gh~~--~~~ITcL 283 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIGTEE-GKIFQNLLFKLSGQSA---------GVNQKGRHEENTQINVLVGHEN--ESAITCL 283 (476)
T ss_pred cCCcceeEEEcccccEEEecCCc-ceEEeeehhcCCcccc---------cccccccccccceeeeeccccC--CcceeEE
Confidence 34446678889866 56777655 32221 000000000 0001122334444444332211 1356655
Q ss_pred EEe-CCEEEEecCCCCeEEEEc
Q 019290 322 QEY-GEYLYTGSSVQPYVVVIK 342 (343)
Q Consensus 322 ~~~-~g~l~i~~~~~~~i~~~~ 342 (343)
... +|.|.+.+.....|.+.+
T Consensus 284 ais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 284 AISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred EEecCccEEEeeCCCCCEEEEe
Confidence 444 889888888777776654
No 182
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.38 E-value=0.71 Score=41.52 Aligned_cols=248 Identities=15% Similarity=0.093 Sum_probs=121.3
Q ss_pred ceEEEcCCCCeeEEEe-c---------CCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290 38 ESLAFDCNGEGPYVGV-S---------DGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV 106 (343)
Q Consensus 38 ~~l~~d~~g~~l~~~~-~---------~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~ 106 (343)
..++++++|+.+|++. . ..-|-.||..|...+ ++..++. .+......++-++++.+
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k-------------~R~~~~~~~~~~~ls~d 105 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK-------------PRAQVVPYKNMFALSAD 105 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS--------------B--BS--GGGEEE-TT
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc-------------chheecccccceEEccC
Confidence 3477899999888542 1 123667888875433 3332211 01122234566788876
Q ss_pred CCeEEEEeCC--CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceE-
Q 019290 107 TCDLYIADAY--FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRL- 183 (343)
Q Consensus 107 ~~~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v- 183 (343)
++.+||.+.. ..|-.+|.+.+++...... ..+..+...++ .++..-.. .|++
T Consensus 106 gk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~------PGC~~iyP~~~-~~F~~lC~------------------DGsl~ 160 (342)
T PF06433_consen 106 GKFLYVQNFTPATSVTVVDLAAKKVVGEIDT------PGCWLIYPSGN-RGFSMLCG------------------DGSLL 160 (342)
T ss_dssp SSEEEEEEESSSEEEEEEETTTTEEEEEEEG------TSEEEEEEEET-TEEEEEET------------------TSCEE
T ss_pred CcEEEEEccCCCCeEEEEECCCCceeeeecC------CCEEEEEecCC-CceEEEec------------------CCceE
Confidence 7788887643 5699999999887654332 23444444442 34332111 2233
Q ss_pred -EEEeCCCCceEE---eecCCC--CcceeEEecCCCEEEEEEcCCCeEEEEEccCcccc--ccceeeec----CCCCCCc
Q 019290 184 -LKYDPLKKNVTV---MYNGLS--FPNGVALSNNNSFLLLAESATLKILRFWLQGERTT--YTPQLFAE----MPRFPDN 251 (343)
Q Consensus 184 -~~~d~~~~~~~~---~~~~~~--~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~--~~~~~~~~----~~~~p~~ 251 (343)
+.+|.+++.... +..... -.+--++..++..+|+. +.+|.|+..++.++... .....+.. ..-.|.|
T Consensus 161 ~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~-Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG 239 (342)
T PF06433_consen 161 TVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV-SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG 239 (342)
T ss_dssp EEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE-BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S
T ss_pred EEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEE-ecCCEEEEEeccCCcccccCcccccCccccccCcCCcc
Confidence 333433222211 111001 11222344556677776 46899999998875320 11111111 1113555
Q ss_pred ---eeeC-CCCCEEEEeccCCCccccccccccccccCCCcc--cCCCeEEEECC-CCCEEEEeeCCCCCccCCceeEEEe
Q 019290 252 ---IKSD-SKGEFWIAMNSARGKIESNKKTAFCEETAKPWF--LRDPVGVKFDV-NGNVVDVLDGNEGNTLNSVSEVQEY 324 (343)
Q Consensus 252 ---i~~d-~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (343)
++++ +.|+||+-++. +. +|. .+...|..+|. .++++..++.+.. ...+..-..+
T Consensus 240 ~Q~~A~~~~~~rlyvLMh~-g~----------------~gsHKdpgteVWv~D~~t~krv~Ri~l~~~--~~Si~Vsqd~ 300 (342)
T PF06433_consen 240 WQLIAYHAASGRLYVLMHQ-GG----------------EGSHKDPGTEVWVYDLKTHKRVARIPLEHP--IDSIAVSQDD 300 (342)
T ss_dssp SS-EEEETTTTEEEEEEEE-------------------TT-TTS-EEEEEEEETTTTEEEEEEEEEEE--ESEEEEESSS
T ss_pred eeeeeeccccCeEEEEecC-CC----------------CCCccCCceEEEEEECCCCeEEEEEeCCCc--cceEEEccCC
Confidence 5565 46789998875 22 121 33457888887 4667777664321 2222222222
Q ss_pred CCEEEEecCCCCeEEEEcC
Q 019290 325 GEYLYTGSSVQPYVVVIKA 343 (343)
Q Consensus 325 ~g~l~i~~~~~~~i~~~~~ 343 (343)
+=.||..+.....+.+||+
T Consensus 301 ~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 301 KPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp S-EEEEEETTTTEEEEEET
T ss_pred CcEEEEEcCCCCeEEEEeC
Confidence 3345555555566666653
No 183
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.37 E-value=0.56 Score=40.26 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=49.3
Q ss_pred EEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeE
Q 019290 40 LAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGL 119 (343)
Q Consensus 40 l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi 119 (343)
-..|.++..+|++++++..|.+|+.+... .+. .-|+|. .-.+-++++.++.||++.+...+
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~c-Vyk--------skcgG~----------~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGC-VYK--------SKCGGG----------TFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccce-EEe--------cccCCc----------eeccceecCCCceEEEEeccceE
Confidence 34588889899999999999999987532 221 111110 11234556657899999765558
Q ss_pred EEEeCCCCeEEEc
Q 019290 120 MVVGPNGGQAQQL 132 (343)
Q Consensus 120 ~~~d~~~~~~~~~ 132 (343)
..++++++..+.+
T Consensus 160 lavt~~~~~~~~~ 172 (354)
T KOG4649|consen 160 LAVTKNPYSSTEF 172 (354)
T ss_pred EEEccCCCCccee
Confidence 8999887755544
No 184
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.37 E-value=0.51 Score=39.81 Aligned_cols=150 Identities=10% Similarity=0.028 Sum_probs=86.2
Q ss_pred eEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE-eCCC
Q 019290 39 SLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA-DAYF 117 (343)
Q Consensus 39 ~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~-~~~~ 117 (343)
+++...|...+.....+..++.||-++++..+ ++....++.+.+.+.. +-.+.++ ....
T Consensus 64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R-------------------r~rgH~aqVNtV~fNe-esSVv~SgsfD~ 123 (307)
T KOG0316|consen 64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR-------------------RFRGHLAQVNTVRFNE-ESSVVASGSFDS 123 (307)
T ss_pred eccccccccccccCCCCceEEEEEcccCeeee-------------------ecccccceeeEEEecC-cceEEEeccccc
Confidence 33344444433444455578888887765432 1223456778889987 5555544 3334
Q ss_pred eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290 118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY 197 (343)
Q Consensus 118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 197 (343)
.+..+|=++..++++-...+. ...+.++.+.. ...++.+ ..|.+-.||...|.... .
T Consensus 124 s~r~wDCRS~s~ePiQildea--~D~V~Si~v~~---heIvaGS-----------------~DGtvRtydiR~G~l~s-D 180 (307)
T KOG0316|consen 124 SVRLWDCRSRSFEPIQILDEA--KDGVSSIDVAE---HEIVAGS-----------------VDGTVRTYDIRKGTLSS-D 180 (307)
T ss_pred eeEEEEcccCCCCccchhhhh--cCceeEEEecc---cEEEeec-----------------cCCcEEEEEeecceeeh-h
Confidence 588888777666554222111 12344444443 4444332 26788889987666432 1
Q ss_pred cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 198 NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 198 ~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.-....+.+.+++|++.+.+. ..++.|..+|-.+
T Consensus 181 y~g~pit~vs~s~d~nc~La~-~l~stlrLlDk~t 214 (307)
T KOG0316|consen 181 YFGHPITSVSFSKDGNCSLAS-SLDSTLRLLDKET 214 (307)
T ss_pred hcCCcceeEEecCCCCEEEEe-eccceeeecccch
Confidence 112346889999999866554 5677888777554
No 185
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=96.35 E-value=0.27 Score=45.33 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=31.1
Q ss_pred eEEEEeCCCC-ce--EEeec--CCCCcceeEEecCCCEEEEEEcC-CCeEEEEEcc
Q 019290 182 RLLKYDPLKK-NV--TVMYN--GLSFPNGVALSNNNSFLLLAESA-TLKILRFWLQ 231 (343)
Q Consensus 182 ~v~~~d~~~~-~~--~~~~~--~~~~~~~i~~~~d~~~lyv~~~~-~~~i~~~~~~ 231 (343)
.+.+.+++++ +. +.+.. ....+.++++.+||. ||+++.. +++|||....
T Consensus 343 ~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGa-llv~~D~~~g~i~Rv~~~ 397 (399)
T COG2133 343 PVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGA-LLVLTDQGDGRILRVSYA 397 (399)
T ss_pred eEEEeccCCCcceEEEEEEecCCCCcccceEECCCCe-EEEeecCCCCeEEEecCC
Confidence 4666766644 21 12222 225789999999986 6666555 6799998754
No 186
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.35 E-value=0.83 Score=42.06 Aligned_cols=202 Identities=10% Similarity=0.084 Sum_probs=98.8
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE-e
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA-D 114 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~-~ 114 (343)
.+-++++.+++...|.+..++.|.+++..++....+....+.. ......+.-+.+.........+++++ ++..++. .
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev-~k~~~~~~k~~r~~h~keil~~avS~-Dgkylatgg 221 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV-LKSHGNPLKESRKGHVKEILTLAVSS-DGKYLATGG 221 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh-hhhccCCCCcccccccceeEEEEEcC-CCcEEEecC
Confidence 5789999999988998889999999988776544221111000 00000000011111222355678888 5554433 2
Q ss_pred CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290 115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT 194 (343)
Q Consensus 115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 194 (343)
....+..++.++.+......... ..+.++++-....++|.+-..+ +-.+|-.+.- .-++
T Consensus 222 ~d~~v~Iw~~~t~ehv~~~~ghr----~~V~~L~fr~gt~~lys~s~Dr----------------svkvw~~~~~-s~ve 280 (479)
T KOG0299|consen 222 RDRHVQIWDCDTLEHVKVFKGHR----GAVSSLAFRKGTSELYSASADR----------------SVKVWSIDQL-SYVE 280 (479)
T ss_pred CCceEEEecCcccchhhcccccc----cceeeeeeecCccceeeeecCC----------------ceEEEehhHh-HHHH
Confidence 22347788988765443322211 2356777665346788754431 2334444322 1122
Q ss_pred EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEec
Q 019290 195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMN 265 (343)
Q Consensus 195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~ 265 (343)
.+...-....+|.....++.+-| .-.+.++..|.+.. ....+|....+.++..+.-.+-.+..++.
T Consensus 281 tlyGHqd~v~~IdaL~reR~vtV-GgrDrT~rlwKi~e----esqlifrg~~~sidcv~~In~~HfvsGSd 346 (479)
T KOG0299|consen 281 TLYGHQDGVLGIDALSRERCVTV-GGRDRTVRLWKIPE----ESQLIFRGGEGSIDCVAFINDEHFVSGSD 346 (479)
T ss_pred HHhCCccceeeechhcccceEEe-ccccceeEEEeccc----cceeeeeCCCCCeeeEEEecccceeeccC
Confidence 22222223344444334443333 32355566666532 11223333445566666533333444433
No 187
>PHA02790 Kelch-like protein; Provisional
Probab=96.34 E-value=1 Score=43.15 Aligned_cols=181 Identities=8% Similarity=-0.056 Sum_probs=92.5
Q ss_pred CCeEEEEeCC------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCC
Q 019290 107 TCDLYIADAY------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRS 180 (343)
Q Consensus 107 ~~~l~v~~~~------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~ 180 (343)
++.||+.... ..+.+||+.+.++..+........ -..++. - +|.+|+.-... ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~---~~~~v~-~-~~~iYviGG~~---------------~~ 330 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRL---YASGVP-A-NNKLYVVGGLP---------------NP 330 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhh---cceEEE-E-CCEEEEECCcC---------------CC
Confidence 5677776321 348899999888887765432211 122333 3 48999854320 12
Q ss_pred ceEEEEeCCCCceEEeecCCCCc-ceeEEecCCCEEEEEEcC---CCeEEEEEccCccccccceeeecCCCCCC--ceee
Q 019290 181 GRLLKYDPLKKNVTVMYNGLSFP-NGVALSNNNSFLLLAESA---TLKILRFWLQGERTTYTPQLFAEMPRFPD--NIKS 254 (343)
Q Consensus 181 ~~v~~~d~~~~~~~~~~~~~~~~-~~i~~~~d~~~lyv~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~p~--~i~~ 254 (343)
..+.+||+.++++..+. .+..+ .+.+...-++.+|+..-. ...+.+|++.. .........+ .|. .-+.
T Consensus 331 ~sve~ydp~~n~W~~~~-~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~----~~W~~~~~m~-~~r~~~~~~ 404 (480)
T PHA02790 331 TSVERWFHGDAAWVNMP-SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNH----DQWQFGPSTY-YPHYKSCAL 404 (480)
T ss_pred CceEEEECCCCeEEECC-CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCC----CEEEeCCCCC-CccccceEE
Confidence 45889999877776543 22221 121111123468886432 24567787654 2222222211 111 1122
Q ss_pred CCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCC-EEEEeeCCCCCccCCceeEEEeCCEEEEecC
Q 019290 255 DSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGN-VVDVLDGNEGNTLNSVSEVQEYGEYLYTGSS 333 (343)
Q Consensus 255 d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~ 333 (343)
--+|.||+... .+.+||++.. ....-+.+.. .....+..-+|+||+.+.
T Consensus 405 ~~~~~IYv~GG---------------------------~~e~ydp~~~~W~~~~~m~~~---r~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 405 VFGRRLFLVGR---------------------------NAEFYCESSNTWTLIDDPIYP---RDNPELIIVDNKLLLIGG 454 (480)
T ss_pred EECCEEEEECC---------------------------ceEEecCCCCcEeEcCCCCCC---ccccEEEEECCEEEEECC
Confidence 23678888742 3456888543 3332222211 122233445889997654
Q ss_pred C-----CCeEEEEcC
Q 019290 334 V-----QPYVVVIKA 343 (343)
Q Consensus 334 ~-----~~~i~~~~~ 343 (343)
. .+.+-+||+
T Consensus 455 ~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 455 FYRGSYIDTIEVYNN 469 (480)
T ss_pred cCCCcccceEEEEEC
Confidence 3 256777775
No 188
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.28 E-value=0.37 Score=46.23 Aligned_cols=196 Identities=14% Similarity=0.089 Sum_probs=107.3
Q ss_pred CCceEEE-cCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 36 GPESLAF-DCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 36 ~p~~l~~-d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
...+|++ .++...+.++.-+++|+.||.+++..+...........+... .......+++..+ .+.++++.
T Consensus 119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s--------G~k~siYSLA~N~-t~t~ivsG 189 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS--------GPKDSIYSLAMNQ-TGTIIVSG 189 (735)
T ss_pred hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC--------CCccceeeeecCC-cceEEEec
Confidence 4678888 556664446677889999999876322111110001000100 1111245666666 67777774
Q ss_pred CCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc-
Q 019290 115 AYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN- 192 (343)
Q Consensus 115 ~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~- 192 (343)
...+ |..+|+++++-..-.. +. -..+..+.+++ ||+-.++.++ .+.|-.+|....+
T Consensus 190 gtek~lr~wDprt~~kimkLr---GH-TdNVr~ll~~d-DGt~~ls~sS-----------------DgtIrlWdLgqQrC 247 (735)
T KOG0308|consen 190 GTEKDLRLWDPRTCKKIMKLR---GH-TDNVRVLLVND-DGTRLLSASS-----------------DGTIRLWDLGQQRC 247 (735)
T ss_pred CcccceEEeccccccceeeee---cc-ccceEEEEEcC-CCCeEeecCC-----------------CceEEeeeccccce
Confidence 3334 8889999875322112 11 13467888888 6988887766 4556666653111
Q ss_pred eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCC-CCCEEEEecc
Q 019290 193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDS-KGEFWIAMNS 266 (343)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~lwi~~~~ 266 (343)
...+.-.-.....+..+++-..+|..+ ..+.|++-++..... ...+.+.......+.... +..+|++++.
T Consensus 248 l~T~~vH~e~VWaL~~~~sf~~vYsG~-rd~~i~~Tdl~n~~~---~tlick~daPv~~l~~~~~~~~~WvtTtd 318 (735)
T KOG0308|consen 248 LATYIVHKEGVWALQSSPSFTHVYSGG-RDGNIYRTDLRNPAK---STLICKEDAPVLKLHLHEHDNSVWVTTTD 318 (735)
T ss_pred eeeEEeccCceEEEeeCCCcceEEecC-CCCcEEecccCCchh---heEeecCCCchhhhhhccccCCceeeecc
Confidence 222222233356666677777777665 578899988765322 222332221112234332 3447999987
No 189
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.28 E-value=0.18 Score=44.95 Aligned_cols=179 Identities=17% Similarity=0.165 Sum_probs=96.2
Q ss_pred CCceEEEcCCC-CeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290 36 GPESLAFDCNG-EGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA 113 (343)
Q Consensus 36 ~p~~l~~d~~g-~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~ 113 (343)
+..+|+-.|.. ..+.++..+|.|..||..+.+.. .| ....+-+.||+++. ...+.++
T Consensus 68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f--------------------~AH~G~V~Gi~v~~-~~~~tvg 126 (433)
T KOG0268|consen 68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF--------------------KAHEGLVRGICVTQ-TSFFTVG 126 (433)
T ss_pred ccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee--------------------ecccCceeeEEecc-cceEEec
Confidence 46777777764 44668889999999998764322 22 12334578999997 6677777
Q ss_pred eCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc-
Q 019290 114 DAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN- 192 (343)
Q Consensus 114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~- 192 (343)
+ ...|-.+-.+....+.+. + .....+|..... +..+.+- ...|-.||+....
T Consensus 127 d-DKtvK~wk~~~~p~~til----g--~s~~~gIdh~~~-~~~FaTc-------------------Ge~i~IWD~~R~~P 179 (433)
T KOG0268|consen 127 D-DKTVKQWKIDGPPLHTIL----G--KSVYLGIDHHRK-NSVFATC-------------------GEQIDIWDEQRDNP 179 (433)
T ss_pred C-CcceeeeeccCCcceeee----c--cccccccccccc-ccccccc-------------------CceeeecccccCCc
Confidence 4 333333332221111111 1 012333333332 3444422 1235556653222
Q ss_pred eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290 193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
+..+.-+......+-+.|....+..+...+++|+.||+..+..+. ++.. .-.++.|+..|++..+++.+.
T Consensus 180 v~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~--KVi~--~mRTN~IswnPeafnF~~a~E 249 (433)
T KOG0268|consen 180 VSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK--KVIL--TMRTNTICWNPEAFNFVAANE 249 (433)
T ss_pred cceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc--eeee--eccccceecCccccceeeccc
Confidence 122222223334555666555555555567899999976533211 2222 223678888888878888776
No 190
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.23 E-value=0.76 Score=40.43 Aligned_cols=190 Identities=12% Similarity=0.036 Sum_probs=97.9
Q ss_pred eeeEEEeCCCCe-EEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290 98 PLGIKFNPVTCD-LYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA 175 (343)
Q Consensus 98 p~gi~~~~~~~~-l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~ 175 (343)
...+.|++ .|. |-++ ..+| +..||..|..+..+.. +....+.+++..+ ||+..++.+.
T Consensus 26 a~~~~Fs~-~G~~lAvG-c~nG~vvI~D~~T~~iar~ls----aH~~pi~sl~WS~-dgr~LltsS~------------- 85 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVG-CANGRVVIYDFDTFRIARMLS----AHVRPITSLCWSR-DGRKLLTSSR------------- 85 (405)
T ss_pred cceEEecc-Ccceeeee-ccCCcEEEEEccccchhhhhh----ccccceeEEEecC-CCCEeeeecC-------------
Confidence 45677887 555 4444 4555 9999998755433321 1223477899999 6998887654
Q ss_pred ecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-----CCCCCC
Q 019290 176 TGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-----MPRFPD 250 (343)
Q Consensus 176 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~p~ 250 (343)
...+-.+|...|..-.-..-.+...+..++|..+...++......-+..+... .....+.. .+-.++
T Consensus 86 ----D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~----~~h~~Lp~d~d~dln~sas 157 (405)
T KOG1273|consen 86 ----DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD----PKHSVLPKDDDGDLNSSAS 157 (405)
T ss_pred ----CceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC----CceeeccCCCccccccccc
Confidence 33455666654542110100122344555554444444332233333344332 11122221 111233
Q ss_pred ceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCC-CEEEEeeCCCCCccCCceeEEE-eCCEE
Q 019290 251 NIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNG-NVVDVLDGNEGNTLNSVSEVQE-YGEYL 328 (343)
Q Consensus 251 ~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~-~~g~l 328 (343)
....|+.|+..++.+.| |.+..++.+. +.+..+.-. ....+-.+.. .+|+-
T Consensus 158 ~~~fdr~g~yIitGtsK------------------------Gkllv~~a~t~e~vas~rit---s~~~IK~I~~s~~g~~ 210 (405)
T KOG1273|consen 158 HGVFDRRGKYIITGTSK------------------------GKLLVYDAETLECVASFRIT---SVQAIKQIIVSRKGRF 210 (405)
T ss_pred cccccCCCCEEEEecCc------------------------ceEEEEecchheeeeeeeec---hheeeeEEEEeccCcE
Confidence 34678999877776662 3555677654 333333221 1234444433 47777
Q ss_pred EEecCCCCeEEEEc
Q 019290 329 YTGSSVQPYVVVIK 342 (343)
Q Consensus 329 ~i~~~~~~~i~~~~ 342 (343)
++.+....-|.+|+
T Consensus 211 liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 211 LIINTSDRVIRTYE 224 (405)
T ss_pred EEEecCCceEEEEe
Confidence 77776666666664
No 191
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.23 E-value=0.57 Score=45.62 Aligned_cols=155 Identities=16% Similarity=0.134 Sum_probs=95.2
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCC-CcCCeeeEEEeCCCCeEEEEeC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEP-LCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
-.++++++|+.+++.+....-+-.|+..++++..- |.. .-+.+..+++++ .+.+.-...
T Consensus 65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~-~g~LlAtgg 124 (775)
T KOG0319|consen 65 ITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDP-TGTLLATGG 124 (775)
T ss_pred hheeeecCCccEEEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcC-CCceEEecc
Confidence 55888999999888888888777788877643211 111 122345789998 665443322
Q ss_pred CC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce-
Q 019290 116 YF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV- 193 (343)
Q Consensus 116 ~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~- 193 (343)
.. .+..+|...+..+....... ..+..+.+.+. -..|+--. +...+.+..||..++..
T Consensus 125 aD~~v~VWdi~~~~~th~fkG~g----GvVssl~F~~~-~~~~lL~s---------------g~~D~~v~vwnl~~~~tc 184 (775)
T KOG0319|consen 125 ADGRVKVWDIKNGYCTHSFKGHG----GVVSSLLFHPH-WNRWLLAS---------------GATDGTVRVWNLNDKRTC 184 (775)
T ss_pred ccceEEEEEeeCCEEEEEecCCC----ceEEEEEeCCc-cchhheee---------------cCCCceEEEEEcccCchH
Confidence 23 47888988776655433322 23567777773 33333111 12245678888764433
Q ss_pred -EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 194 -TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 194 -~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.......+...++++.+|+..+. +...+..+..||+..
T Consensus 185 l~~~~~H~S~vtsL~~~~d~~~~l-s~~RDkvi~vwd~~~ 223 (775)
T KOG0319|consen 185 LHTMILHKSAVTSLAFSEDSLELL-SVGRDKVIIVWDLVQ 223 (775)
T ss_pred HHHHHhhhhheeeeeeccCCceEE-EeccCcEEEEeehhh
Confidence 22234567788999999977554 445678899999854
No 192
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=96.22 E-value=0.69 Score=39.78 Aligned_cols=187 Identities=8% Similarity=0.031 Sum_probs=102.8
Q ss_pred eEEEcCCCCeeEEEecCCEEEEE-EcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC
Q 019290 39 SLAFDCNGEGPYVGVSDGRILKW-KAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF 117 (343)
Q Consensus 39 ~l~~d~~g~~l~~~~~~g~i~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~ 117 (343)
-|-+..+|.+||+...+...-.| ..++..+..+. ...+.+..+.++.+...+.-+....
T Consensus 15 qiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~--------------------GHtGavW~~Did~~s~~liTGSAD~ 74 (327)
T KOG0643|consen 15 QIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD--------------------GHTGAVWCCDIDWDSKHLITGSADQ 74 (327)
T ss_pred eEEecCCCcEEEEecCCCCceEEEecCCceeeeec--------------------CCCceEEEEEecCCcceeeeccccc
Confidence 45567778877755444433322 22443333331 2223456777777444555554445
Q ss_pred eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC-------C
Q 019290 118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL-------K 190 (343)
Q Consensus 118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-------~ 190 (343)
.+..+|.++|+........ ..+..+-++. +|++.+......+ ...+.|..+|.. +
T Consensus 75 t~kLWDv~tGk~la~~k~~-----~~Vk~~~F~~-~gn~~l~~tD~~m------------g~~~~v~~fdi~~~~~~~~s 136 (327)
T KOG0643|consen 75 TAKLWDVETGKQLATWKTN-----SPVKRVDFSF-GGNLILASTDKQM------------GYTCFVSVFDIRDDSSDIDS 136 (327)
T ss_pred eeEEEEcCCCcEEEEeecC-----CeeEEEeecc-CCcEEEEEehhhc------------CcceEEEEEEccCChhhhcc
Confidence 5888999999865544332 2345666777 4665543322111 113445555543 1
Q ss_pred Cc-eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290 191 KN-VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 191 ~~-~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
.+ +..+...-+.+....+++-++.++ +.-..+.|.+||......+..... ......+.|...++...+|+...
T Consensus 137 ~ep~~kI~t~~skit~a~Wg~l~~~ii-~Ghe~G~is~~da~~g~~~v~s~~--~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 137 EEPYLKIPTPDSKITSALWGPLGETII-AGHEDGSISIYDARTGKELVDSDE--EHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred cCceEEecCCccceeeeeecccCCEEE-EecCCCcEEEEEcccCceeeechh--hhccccccccccCCcceEEeccc
Confidence 22 223333345667777888888654 445688999999764211011000 11224677889999999998765
No 193
>PHA03098 kelch-like protein; Provisional
Probab=96.17 E-value=1.4 Score=42.87 Aligned_cols=194 Identities=8% Similarity=0.011 Sum_probs=95.2
Q ss_pred CCeEEEEeCC-------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290 107 TCDLYIADAY-------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR 179 (343)
Q Consensus 107 ~~~l~v~~~~-------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~ 179 (343)
++.||+.... +.++.+|+.+.++..+....... .-..++.- ++.+|+..... ....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R---~~~~~~~~--~~~lyv~GG~~------------~~~~ 356 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPR---KNPGVTVF--NNRIYVIGGIY------------NSIS 356 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccc---ccceEEEE--CCEEEEEeCCC------------CCEe
Confidence 5677776321 24889999998887765433221 12233333 37888843321 0011
Q ss_pred CceEEEEeCCCCceEEeecCCCCc---ceeEEecCCCEEEEEEcC------CCeEEEEEccCccccccceeeecCCC-CC
Q 019290 180 SGRLLKYDPLKKNVTVMYNGLSFP---NGVALSNNNSFLLLAESA------TLKILRFWLQGERTTYTPQLFAEMPR-FP 249 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~~~~~~~~~~---~~i~~~~d~~~lyv~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~-~p 249 (343)
...+++||+.+++++.... +..+ ...+. -++.+|+..-. .+.+++||+..+ +.......+. .-
T Consensus 357 ~~~v~~yd~~~~~W~~~~~-lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~----~W~~~~~~p~~r~ 429 (534)
T PHA03098 357 LNTVESWKPGESKWREEPP-LIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTN----KWSKGSPLPISHY 429 (534)
T ss_pred cceEEEEcCCCCceeeCCC-cCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCC----eeeecCCCCcccc
Confidence 3458999998888765432 2111 12222 23467876421 146888887652 2222222111 00
Q ss_pred CceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCC-EEEEeeCCCCCccCCceeEEEeCCEE
Q 019290 250 DNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGN-VVDVLDGNEGNTLNSVSEVQEYGEYL 328 (343)
Q Consensus 250 ~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l 328 (343)
..-++--+|.||+......... ......+.+||+... ....-..+.. .. ...+...+++|
T Consensus 430 ~~~~~~~~~~iyv~GG~~~~~~----------------~~~~~~v~~yd~~~~~W~~~~~~~~~-r~--~~~~~~~~~~i 490 (534)
T PHA03098 430 GGCAIYHDGKIYVIGGISYIDN----------------IKVYNIVESYNPVTNKWTELSSLNFP-RI--NASLCIFNNKI 490 (534)
T ss_pred CceEEEECCEEEEECCccCCCC----------------CcccceEEEecCCCCceeeCCCCCcc-cc--cceEEEECCEE
Confidence 1112223577888754211100 000124889998644 3332222211 11 12233348889
Q ss_pred EEecCC-----CCeEEEEcC
Q 019290 329 YTGSSV-----QPYVVVIKA 343 (343)
Q Consensus 329 ~i~~~~-----~~~i~~~~~ 343 (343)
|+-+.. .+.+.+||+
T Consensus 491 yv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 491 YVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EEEcCCcCCcccceeEEEeC
Confidence 865533 356788764
No 194
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.16 E-value=0.73 Score=41.23 Aligned_cols=155 Identities=9% Similarity=0.099 Sum_probs=95.0
Q ss_pred CCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290 34 VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA 113 (343)
Q Consensus 34 ~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~ 113 (343)
+++..+|..-|.-++++++..+..+..||..+.. ..+... ...+.+..+...+-+..++-+
T Consensus 235 lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~------------------GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 235 LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLS------------------GHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred cceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEec------------------CCCCcceeEEeecCCCceEEe
Confidence 4567888899988888888888888889988753 222111 111223455566557788888
Q ss_pred eCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290 114 DAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV 193 (343)
Q Consensus 114 ~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 193 (343)
.+...|..+|...|+.-... ... ...+..++..|. -.++.+.. ...+-.++...|++
T Consensus 296 S~D~tvrlWDl~agkt~~tl-t~h---kksvral~lhP~-e~~fASas------------------~dnik~w~~p~g~f 352 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMITL-THH---KKSVRALCLHPK-ENLFASAS------------------PDNIKQWKLPEGEF 352 (460)
T ss_pred cCCceEEEeeeccCceeEee-ecc---cceeeEEecCCc-hhhhhccC------------------CccceeccCCccch
Confidence 66556899998877643221 111 134567788884 66666443 23455555544443
Q ss_pred EE-eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 194 TV-MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 194 ~~-~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
-. +...-...+.+.+..|+ +|++...++.++.||...
T Consensus 353 ~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 353 LQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred hhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCc
Confidence 11 11111224555565554 788888899999999874
No 195
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.14 E-value=0.0092 Score=32.53 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=22.9
Q ss_pred CCCceEEEcCCCCeeEEEecCCEEEEE
Q 019290 35 VGPESLAFDCNGEGPYVGVSDGRILKW 61 (343)
Q Consensus 35 ~~p~~l~~d~~g~~l~~~~~~g~i~~~ 61 (343)
..|.+|+.+++|+++.++..+++|.+|
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 579999999999966688888888775
No 196
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=96.07 E-value=0.89 Score=39.70 Aligned_cols=184 Identities=15% Similarity=0.146 Sum_probs=98.6
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY 116 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~ 116 (343)
...+.+.|+|..+.++..+..|+.|+..+. ...+.. ...-.+.+.++.+.+++..|+.+.+.
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~-----------------lkgHsgAVM~l~~~~d~s~i~S~gtD 111 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENFWV-----------------LKGHSGAVMELHGMRDGSHILSCGTD 111 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEecccc-ccceee-----------------eccccceeEeeeeccCCCEEEEecCC
Confidence 457778999996667788999999985331 111110 01223345677778755667777666
Q ss_pred CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEe
Q 019290 117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVM 196 (343)
Q Consensus 117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 196 (343)
..++.+|.++|+...-.... ...+|.+..... |-..+...+ ..+.+-.+|...+.....
T Consensus 112 k~v~~wD~~tG~~~rk~k~h----~~~vNs~~p~rr-g~~lv~Sgs----------------dD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 112 KTVRGWDAETGKRIRKHKGH----TSFVNSLDPSRR-GPQLVCSGS----------------DDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred ceEEEEecccceeeehhccc----cceeeecCcccc-CCeEEEecC----------------CCceEEEEeecccchhhc
Confidence 77999999999865543322 135666665443 443333222 145566667654432221
Q ss_pred ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCC---CCceeeCCCCCEEEEecc
Q 019290 197 YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRF---PDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 197 ~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---p~~i~~d~~G~lwi~~~~ 266 (343)
...-....++.|..++.... +.--++.|-.|++..+. .... ..|+ ..++...++|....+...
T Consensus 171 ~~~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d----~~~~--lsGh~DtIt~lsls~~gs~llsnsM 236 (338)
T KOG0265|consen 171 FENKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKND----GLYT--LSGHADTITGLSLSRYGSFLLSNSM 236 (338)
T ss_pred cccceeEEEEEeccccccee-eccccCceeeeccccCc----ceEE--eecccCceeeEEeccCCCccccccc
Confidence 11112234455544444333 33346677788874321 1111 2222 334556667766665443
No 197
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.98 E-value=0.36 Score=43.33 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=69.1
Q ss_pred EcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCee---eEEEeCCCCeEEEEeC---
Q 019290 42 FDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPL---GIKFNPVTCDLYIADA--- 115 (343)
Q Consensus 42 ~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---gi~~~~~~~~l~v~~~--- 115 (343)
++..+..+|+.+.+|.|+..|..+.....-..-.-....+ ....++|- -+++++..++||+.=+
T Consensus 191 ~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e----------~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~ 260 (342)
T PF06433_consen 191 YSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAE----------KADGWRPGGWQLIAYHAASGRLYVLMHQGG 260 (342)
T ss_dssp EETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHH----------HHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred eECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccc----------cccCcCCcceeeeeeccccCeEEEEecCCC
Confidence 3445554666778899999988775533221111000000 00122343 3778877889998621
Q ss_pred ----C---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCC-eEEEEeCCcccccccceeeeeecCCCceEEEEe
Q 019290 116 ----Y---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTG-IVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYD 187 (343)
Q Consensus 116 ----~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 187 (343)
. ..|+.+|+++++...-.... ..+.+|.+...+. .||..+.. .+.|+.+|
T Consensus 261 ~gsHKdpgteVWv~D~~t~krv~Ri~l~-----~~~~Si~Vsqd~~P~L~~~~~~-----------------~~~l~v~D 318 (342)
T PF06433_consen 261 EGSHKDPGTEVWVYDLKTHKRVARIPLE-----HPIDSIAVSQDDKPLLYALSAG-----------------DGTLDVYD 318 (342)
T ss_dssp TT-TTS-EEEEEEEETTTTEEEEEEEEE-----EEESEEEEESSSS-EEEEEETT-----------------TTEEEEEE
T ss_pred CCCccCCceEEEEEECCCCeEEEEEeCC-----CccceEEEccCCCcEEEEEcCC-----------------CCeEEEEe
Confidence 1 24999999998754433221 1245777776323 45554433 46799999
Q ss_pred CCCCceEEeecCC
Q 019290 188 PLKKNVTVMYNGL 200 (343)
Q Consensus 188 ~~~~~~~~~~~~~ 200 (343)
..+|+...-...+
T Consensus 319 ~~tGk~~~~~~~l 331 (342)
T PF06433_consen 319 AATGKLVRSIEQL 331 (342)
T ss_dssp TTT--EEEEE---
T ss_pred CcCCcEEeehhcc
Confidence 9988876544333
No 198
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=95.94 E-value=0.15 Score=46.01 Aligned_cols=184 Identities=13% Similarity=0.116 Sum_probs=103.2
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY 116 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~ 116 (343)
...+.+.++|+.|.+++..|..-.|+..+=.+..+.. .....+..+.... +++..|+...
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQ-------------------aHDs~Vr~m~ws~-~g~wmiSgD~ 158 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQ-------------------AHDSPVRTMKWSH-NGTWMISGDK 158 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCceeeHHHHhh-------------------hhcccceeEEEcc-CCCEEEEcCC
Confidence 4577889999999999888877777653311111111 1112345677776 5555554334
Q ss_pred Ce-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc-eE
Q 019290 117 FG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN-VT 194 (343)
Q Consensus 117 ~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~ 194 (343)
.| |-.+++.-..++.+ + ......+.++++.++ +.-|++.+. .+.|-.+|-.-.+ -+
T Consensus 159 gG~iKyWqpnmnnVk~~-~---ahh~eaIRdlafSpn-DskF~t~Sd-----------------Dg~ikiWdf~~~kee~ 216 (464)
T KOG0284|consen 159 GGMIKYWQPNMNNVKII-Q---AHHAEAIRDLAFSPN-DSKFLTCSD-----------------DGTIKIWDFRMPKEER 216 (464)
T ss_pred CceEEecccchhhhHHh-h---HhhhhhhheeccCCC-CceeEEecC-----------------CCeEEEEeccCCchhh
Confidence 55 44445543323221 1 122246889999995 777877654 4555555543222 23
Q ss_pred EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290 195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
.+......+..++++|... |.++...++-|-.||..+.. ....+..-....-++.+.++|++..+...
T Consensus 217 vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~---cl~tlh~HKntVl~~~f~~n~N~Llt~sk 284 (464)
T KOG0284|consen 217 VLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGS---CLATLHGHKNTVLAVKFNPNGNWLLTGSK 284 (464)
T ss_pred eeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcc---hhhhhhhccceEEEEEEcCCCCeeEEccC
Confidence 3444556688899998765 67777777777778865421 11111111222334556777755555433
No 199
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=95.91 E-value=0.47 Score=42.93 Aligned_cols=145 Identities=16% Similarity=0.164 Sum_probs=82.0
Q ss_pred eEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC-eEEEEeCCCC
Q 019290 49 PYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF-GLMVVGPNGG 127 (343)
Q Consensus 49 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~-gi~~~d~~~~ 127 (343)
|.++..+..|..|+-.|++.-.-. .......++.+.. +|.++++...+ .|..+|++++
T Consensus 147 Llsag~Dn~v~iWnv~tgeali~l--------------------~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~ 205 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGEALITL--------------------DHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRG 205 (472)
T ss_pred HhhccCCceEEEEeccCCceeeec--------------------CCCCeEEEEEecc-CCceeeeecccceeEEEcCCCC
Confidence 334445667888887775422110 1233467888998 88888886554 4999999998
Q ss_pred eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeE
Q 019290 128 QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVA 207 (343)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~ 207 (343)
++..-.....+ ..+..+.+-. +|.++-+..++ + . .-.+-.+|++.-+.-.....+...+|+.
T Consensus 206 ~~v~e~~~heG---~k~~Raifl~-~g~i~tTGfsr-~--s-----------eRq~aLwdp~nl~eP~~~~elDtSnGvl 267 (472)
T KOG0303|consen 206 TVVSEGVAHEG---AKPARAIFLA-SGKIFTTGFSR-M--S-----------ERQIALWDPNNLEEPIALQELDTSNGVL 267 (472)
T ss_pred cEeeecccccC---CCcceeEEec-cCceeeecccc-c--c-----------ccceeccCcccccCcceeEEeccCCceE
Confidence 87654333333 2233444444 36644333221 0 0 1123344443211111122334455554
Q ss_pred ---EecCCCEEEEEEcCCCeEEEEEccC
Q 019290 208 ---LSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 208 ---~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
+++|.+.+|++.-.++.|..|.+..
T Consensus 268 ~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 268 LPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred EeeecCCCCEEEEEecCCcceEEEEecC
Confidence 4678889999999899998888764
No 200
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=95.91 E-value=0.25 Score=44.44 Aligned_cols=140 Identities=15% Similarity=0.111 Sum_probs=83.4
Q ss_pred CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe-EEEEeCCCeEEEEeC
Q 019290 46 GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD-LYIADAYFGLMVVGP 124 (343)
Q Consensus 46 g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~-l~v~~~~~gi~~~d~ 124 (343)
|..++.+..+..++.|+|.... +.+ .++......++.+.|+| +++ +--+.+...|..++-
T Consensus 336 ~erlVSgsDd~tlflW~p~~~k-kpi-----------------~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSK-KPI-----------------TRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDG 396 (480)
T ss_pred cceeEEecCCceEEEecccccc-cch-----------------hhhhchhhheeeEEECC-CccEEEEeecccceeeeeC
Confidence 4458888888999999885422 111 12223344578899998 443 333334456888998
Q ss_pred CCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee-cCCCCc
Q 019290 125 NGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY-NGLSFP 203 (343)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~ 203 (343)
++|++-...... ...++.++... |.+|.++-+. ...+=.++..++++..-. ......
T Consensus 397 ~tGk~lasfRGH----v~~VYqvawsa-DsRLlVS~Sk-----------------DsTLKvw~V~tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 397 RTGKFLASFRGH----VAAVYQVAWSA-DSRLLVSGSK-----------------DSTLKVWDVRTKKLKQDLPGHADEV 454 (480)
T ss_pred CCcchhhhhhhc----cceeEEEEecc-CccEEEEcCC-----------------CceEEEEEeeeeeecccCCCCCceE
Confidence 888754322211 23578889888 6899997764 223444444445543222 123346
Q ss_pred ceeEEecCCCEEEEEEcCCCeEEEE
Q 019290 204 NGVALSNNNSFLLLAESATLKILRF 228 (343)
Q Consensus 204 ~~i~~~~d~~~lyv~~~~~~~i~~~ 228 (343)
.++.++|||+. . +.....+++++
T Consensus 455 f~vDwspDG~r-V-~sggkdkv~~l 477 (480)
T KOG0271|consen 455 FAVDWSPDGQR-V-ASGGKDKVLRL 477 (480)
T ss_pred EEEEecCCCce-e-ecCCCceEEEe
Confidence 77888899874 3 33445566654
No 201
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=2.3 Score=42.75 Aligned_cols=153 Identities=13% Similarity=0.185 Sum_probs=95.8
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
...+|.+-|..-.+.++-+.|.|..||..=+. +.+| ....+.+.|+.|++ .+-|||+.
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF--------------------deHdGpVRgv~FH~-~qplFVSG 69 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF--------------------DEHDGPVRGVDFHP-TQPLFVSG 69 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh--------------------hccCCccceeeecC-CCCeEEec
Confidence 46788999988855678889988888875321 1112 22344568999999 88899984
Q ss_pred CCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290 115 AYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV 193 (343)
Q Consensus 115 ~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 193 (343)
..+ -|-+++.++.+ .+ ....+ ....+..+.+.++ .=|+--.+ -...|..|+..+++.
T Consensus 70 GDDykIkVWnYk~rr--cl-ftL~G-HlDYVRt~~FHhe--yPWIlSAS----------------DDQTIrIWNwqsr~~ 127 (1202)
T KOG0292|consen 70 GDDYKIKVWNYKTRR--CL-FTLLG-HLDYVRTVFFHHE--YPWILSAS----------------DDQTIRIWNWQSRKC 127 (1202)
T ss_pred CCccEEEEEecccce--eh-hhhcc-ccceeEEeeccCC--CceEEEcc----------------CCCeEEEEeccCCce
Confidence 222 25566655433 22 22222 1245666777763 55552221 134566677776766
Q ss_pred EEeecCCCC-cceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 194 TVMYNGLSF-PNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 194 ~~~~~~~~~-~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.....+-.+ .....|+|.+. ++|+.+-+++|.+||+.|
T Consensus 128 iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 128 IAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISG 166 (1202)
T ss_pred EEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecc
Confidence 555444332 45666888655 788888999999999987
No 202
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=95.79 E-value=0.45 Score=41.97 Aligned_cols=117 Identities=10% Similarity=0.049 Sum_probs=68.1
Q ss_pred CeeeEEEeCCCCeEEEEeCCCeEEEEeC-CCCeEEEcccc----cCCCCccCcceeEEeCCCCeEE-EEeCCcccccccc
Q 019290 97 RPLGIKFNPVTCDLYIADAYFGLMVVGP-NGGQAQQLASS----AGGIPFRFTNDLDIDPNTGIVY-FTDSSIYFQRRQY 170 (343)
Q Consensus 97 ~p~gi~~~~~~~~l~v~~~~~gi~~~d~-~~~~~~~~~~~----~~~~~~~~~~~i~~d~~dg~l~-v~~~~~~~~~~~~ 170 (343)
..++++|++++..||.+ ..+.|..+|. +.|..-+.... ..++ ...+..+++.|.+-.++ ++..++
T Consensus 160 aAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq-~giisc~a~sP~~~~~~a~gsY~q------- 230 (406)
T KOG2919|consen 160 AAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ-KGIISCFAFSPMDSKTLAVGSYGQ------- 230 (406)
T ss_pred hheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccc-cceeeeeeccCCCCcceeeecccc-------
Confidence 46889999944455555 5667999987 55543222211 1121 13355677777533233 322221
Q ss_pred eeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 171 FMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 171 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.-+||+.+.. +-...+........=+++.++|+.||........|.+||+.-
T Consensus 231 ---------~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 231 ---------RVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred ---------eeeeEecCCC-CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 2346665532 222223333344566788999999999888889999999853
No 203
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.78 E-value=1.6 Score=40.44 Aligned_cols=166 Identities=13% Similarity=0.109 Sum_probs=94.1
Q ss_pred ccccccCCCCC----CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEE-eeecCCCccccccCCCCCcccCCCcCCee
Q 019290 25 SYQQLQLPGVV----GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTE-FATTAPHRAREICDGSTNTTLEPLCGRPL 99 (343)
Q Consensus 25 ~~~~~~~~~~~----~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 99 (343)
.++++..|.+. ...+|++.|..-.=++-+..-++-.|+..+.+... |. .-.....
T Consensus 13 ~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~s--------------------rFk~~v~ 72 (487)
T KOG0310|consen 13 YWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFS--------------------RFKDVVY 72 (487)
T ss_pred hhhhhcccccccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHH--------------------hhcccee
Confidence 44555555332 36688898864423444556677778765532211 10 0011346
Q ss_pred eEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecC
Q 019290 100 GIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGD 178 (343)
Q Consensus 100 gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~ 178 (343)
++.|.. +|.|+.+....| +..+|.++..+-+..... ...++...+.+.|+.++++.+.
T Consensus 73 s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah----~apv~~~~f~~~d~t~l~s~sD---------------- 131 (487)
T KOG0310|consen 73 SVDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLYAH----QAPVHVTKFSPQDNTMLVSGSD---------------- 131 (487)
T ss_pred EEEeec-CCeEEEccCCcCcEEEeccccHHHHHHHhhc----cCceeEEEecccCCeEEEecCC----------------
Confidence 788887 788887755566 777885432111111111 1235666777766777775543
Q ss_pred CCceEEEEeCCCCceEEeec-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 179 RSGRLLKYDPLKKNVTVMYN-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 179 ~~~~v~~~d~~~~~~~~~~~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
...+-.+|..+..+..... .-......++.|...++.++...++.|..||...
T Consensus 132 -d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 132 -DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred -CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 2223344555554421222 2223456677777778999999999999999764
No 204
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.75 E-value=1.6 Score=40.06 Aligned_cols=185 Identities=9% Similarity=0.086 Sum_probs=83.9
Q ss_pred eEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe----
Q 019290 39 SLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD---- 114 (343)
Q Consensus 39 ~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~---- 114 (343)
+.+..++.+.+|.-.++.+|.++|.++++...+-..+... ...|....+.+++.+++.
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~------------------~g~gt~v~n~d~t~~~g~e~~~ 146 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDW------------------KGYGTWVANSDCTKLVGIEISR 146 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTE------------------EEEEEEEE-TTSSEEEEEEEEG
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccc------------------ccccceeeCCCccEEEEEEEee
Confidence 5666677675554345678999999998765553322111 111222212244444431
Q ss_pred -------------------CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeE-EEEeCCcccccccceeee
Q 019290 115 -------------------AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIV-YFTDSSIYFQRRQYFMSI 174 (343)
Q Consensus 115 -------------------~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l-~v~~~~~~~~~~~~~~~~ 174 (343)
...+|+.+|+++|+.+.+.... .+++.+-+.|.|..+ -+...+.
T Consensus 147 ~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-----~wlgH~~fsP~dp~li~fCHEGp----------- 210 (386)
T PF14583_consen 147 EDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-----DWLGHVQFSPTDPTLIMFCHEGP----------- 210 (386)
T ss_dssp GG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-----S-EEEEEEETTEEEEEEEEE-S------------
T ss_pred hhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-----ccccCcccCCCCCCEEEEeccCC-----------
Confidence 1246999999999988775432 345556665543332 2222210
Q ss_pred eecCC-CceEEEEeCCCCceEEeecCCCCcceeE----EecCCCEEEE-EEcCCC---eEEEEEccCccccccceeeecC
Q 019290 175 ATGDR-SGRLLKYDPLKKNVTVMYNGLSFPNGVA----LSNNNSFLLL-AESATL---KILRFWLQGERTTYTPQLFAEM 245 (343)
Q Consensus 175 ~~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~i~----~~~d~~~lyv-~~~~~~---~i~~~~~~~~~~~~~~~~~~~~ 245 (343)
-.. ..+||.++.++.....+... .+..++ +.+||..++. .-..++ .|..+++.+ .+.+.+...
T Consensus 211 --w~~Vd~RiW~i~~dg~~~~~v~~~--~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t----~~~~~~~~~ 282 (386)
T PF14583_consen 211 --WDLVDQRIWTINTDGSNVKKVHRR--MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT----GERRRLMEM 282 (386)
T ss_dssp --TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT------EEEEEEE
T ss_pred --cceeceEEEEEEcCCCcceeeecC--CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC----CCceEEEeC
Confidence 001 24788888776666554322 122222 4578876655 332222 344455543 222333332
Q ss_pred CCCCCceeeCCCCCEEEEecc
Q 019290 246 PRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 246 ~~~p~~i~~d~~G~lwi~~~~ 266 (343)
+. -.-+....||+|++++..
T Consensus 283 p~-~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 283 PW-CSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp -S-EEEEEE-TTSSEEEEEE-
T ss_pred Cc-eeeeEEcCCCCEEEecCC
Confidence 21 223566789999999865
No 205
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.75 E-value=0.66 Score=42.16 Aligned_cols=135 Identities=16% Similarity=0.104 Sum_probs=81.9
Q ss_pred CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCC
Q 019290 46 GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPN 125 (343)
Q Consensus 46 g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~ 125 (343)
+..+..+..+..|..||..+.....- .+..+...++.+..++..|......+-+-.+|..
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~s--------------------v~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlR 371 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRS--------------------VPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLR 371 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeE--------------------eecCcceeeEeeccCCeEEeeecCCCceeeeecc
Confidence 34345677888888898765443321 1233456677777745567766445568889988
Q ss_pred CCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCC---C
Q 019290 126 GGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLS---F 202 (343)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~ 202 (343)
+..+...+....-....-.+.+.+.| |+.... ..+ ..+.||.|+..+++.+...+... .
T Consensus 372 t~eI~~~~sA~g~k~asDwtrvvfSp-d~~Yva-AGS----------------~dgsv~iW~v~tgKlE~~l~~s~s~~a 433 (459)
T KOG0288|consen 372 TKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVA-AGS----------------ADGSVYIWSVFTGKLEKVLSLSTSNAA 433 (459)
T ss_pred cccEEEEeeccccccccccceeEECC-CCceee-ecc----------------CCCcEEEEEccCceEEEEeccCCCCcc
Confidence 77666543221111112367788888 455444 322 26789999999888875543322 2
Q ss_pred cceeEEecCCCEEEEE
Q 019290 203 PNGVALSNNNSFLLLA 218 (343)
Q Consensus 203 ~~~i~~~~d~~~lyv~ 218 (343)
...+.+++.|..|.-+
T Consensus 434 I~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 434 ITSLSWNPSGSGLLSA 449 (459)
T ss_pred eEEEEEcCCCchhhcc
Confidence 4566777777666544
No 206
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=95.73 E-value=1.2 Score=38.31 Aligned_cols=181 Identities=11% Similarity=0.093 Sum_probs=100.2
Q ss_pred CCceEEEcCCCC-eeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 36 GPESLAFDCNGE-GPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 36 ~p~~l~~d~~g~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
..+-++.++... .+.++..+..|.++|...++...-. ...+.-.-+...|+++.+-+++
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i--------------------~~~~eni~i~wsp~g~~~~~~~ 125 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI--------------------ETKGENINITWSPDGEYIAVGN 125 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe--------------------eccCcceEEEEcCCCCEEEEec
Confidence 577889998754 4446667778999998765543221 1111223466677566677776
Q ss_pred CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce--EEEEeCCCCc
Q 019290 115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR--LLKYDPLKKN 192 (343)
Q Consensus 115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~--v~~~d~~~~~ 192 (343)
..+.|..+|.++.++..-.+. .-..|.+...- ++.++|.+.+ -|. |..|- .-+.
T Consensus 126 kdD~it~id~r~~~~~~~~~~-----~~e~ne~~w~~-~nd~Fflt~G-----------------lG~v~ILsyp-sLkp 181 (313)
T KOG1407|consen 126 KDDRITFIDARTYKIVNEEQF-----KFEVNEISWNN-SNDLFFLTNG-----------------LGCVEILSYP-SLKP 181 (313)
T ss_pred CcccEEEEEecccceeehhcc-----cceeeeeeecC-CCCEEEEecC-----------------CceEEEEecc-cccc
Confidence 566788888776543322111 13467777775 5888886654 233 44442 2122
Q ss_pred eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEe
Q 019290 193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM 264 (343)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~ 264 (343)
+..+......-..|.|+|+|+++ .+.+.+..+..||++. . --.+.+..+.--.+-+.+.-+|++..+.
T Consensus 182 v~si~AH~snCicI~f~p~Gryf-A~GsADAlvSLWD~~E--L-iC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 182 VQSIKAHPSNCICIEFDPDGRYF-ATGSADALVSLWDVDE--L-ICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred ccccccCCcceEEEEECCCCceE-eeccccceeeccChhH--h-hhheeeccccCceEEEEeccCcceeecc
Confidence 22333333444567788999854 3455667777888654 1 2223333322112334555566555443
No 207
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.66 E-value=1 Score=41.35 Aligned_cols=145 Identities=11% Similarity=0.173 Sum_probs=82.6
Q ss_pred eEEEeCCCCe-EEEEeC---CC--eEEEEeCCCCeEEEcccccCCCCccCcceeEEe-CC-CCeEEEEeCCcccccccce
Q 019290 100 GIKFNPVTCD-LYIADA---YF--GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDID-PN-TGIVYFTDSSIYFQRRQYF 171 (343)
Q Consensus 100 gi~~~~~~~~-l~v~~~---~~--gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d-~~-dg~l~v~~~~~~~~~~~~~ 171 (343)
.+...+ ++. +++.-. .+ .+..+|..++..+.+.......=........+- +. +.-+|++...
T Consensus 188 ~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~--------- 257 (353)
T PF00930_consen 188 RVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD--------- 257 (353)
T ss_dssp EEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT---------
T ss_pred cceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC---------
Confidence 344445 444 666522 12 277788877766554332221111222233332 21 2346665532
Q ss_pred eeeeecCCCceEEEEeCCCCceEEeecCCCCc-ceeEEecCCCEEEEEEcC----CCeEEEEEcc-CccccccceeeecC
Q 019290 172 MSIATGDRSGRLLKYDPLKKNVTVMYNGLSFP-NGVALSNNNSFLLLAESA----TLKILRFWLQ-GERTTYTPQLFAEM 245 (343)
Q Consensus 172 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~i~~~~d~~~lyv~~~~----~~~i~~~~~~-~~~~~~~~~~~~~~ 245 (343)
+...|+.++.+++..+.+..+--.. .-+.++++++.+|++... ...||+.+++ + +..+.+...
T Consensus 258 -------G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~----~~~~~LT~~ 326 (353)
T PF00930_consen 258 -------GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG----GEPKCLTCE 326 (353)
T ss_dssp -------SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET----TEEEESSTT
T ss_pred -------CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC----CCeEeccCC
Confidence 2567999999887766655443333 346788888999998765 4589999887 5 444555433
Q ss_pred CCCCC-ceeeCCCCCEEEEecc
Q 019290 246 PRFPD-NIKSDSKGEFWIAMNS 266 (343)
Q Consensus 246 ~~~p~-~i~~d~~G~lwi~~~~ 266 (343)
.+ .. ...++++|+.++-...
T Consensus 327 ~~-~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 327 DG-DHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SS-TTEEEEE-TTSSEEEEEEE
T ss_pred CC-CceEEEECCCCCEEEEEEc
Confidence 32 33 6788999988876544
No 208
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.60 E-value=1.9 Score=39.84 Aligned_cols=151 Identities=20% Similarity=0.175 Sum_probs=85.4
Q ss_pred eEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe
Q 019290 39 SLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG 118 (343)
Q Consensus 39 ~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g 118 (343)
++++++||..+.++..+..+..|+.++.+.... +....+.+.+++|-.....||.+....+
T Consensus 207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~-------------------~~ghr~~V~~L~fr~gt~~lys~s~Drs 267 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV-------------------FKGHRGAVSSLAFRKGTSELYSASADRS 267 (479)
T ss_pred EEEEcCCCcEEEecCCCceEEEecCcccchhhc-------------------ccccccceeeeeeecCccceeeeecCCc
Confidence 788899999555666666677898887543221 1123345678999876778999976677
Q ss_pred EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec
Q 019290 119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN 198 (343)
Q Consensus 119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 198 (343)
+-.++.+.-... ....+.+ ..+.+|..-.. .+.. +..++ ..+-++|.+ ++.-+. .+..
T Consensus 268 vkvw~~~~~s~v---etlyGHq-d~v~~IdaL~r-eR~v-tVGgr--------------DrT~rlwKi-~eesql-ifrg 325 (479)
T KOG0299|consen 268 VKVWSIDQLSYV---ETLYGHQ-DGVLGIDALSR-ERCV-TVGGR--------------DRTVRLWKI-PEESQL-IFRG 325 (479)
T ss_pred eEEEehhHhHHH---HHHhCCc-cceeeechhcc-cceE-Eeccc--------------cceeEEEec-ccccee-eeeC
Confidence 888887642211 1111111 12333332222 3322 11110 113456666 221121 2233
Q ss_pred CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 199 GLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 199 ~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
+-..+..+++-.+.. +++.+.+|.|..|++..
T Consensus 326 ~~~sidcv~~In~~H--fvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 326 GEGSIDCVAFINDEH--FVSGSDNGSIALWSLLK 357 (479)
T ss_pred CCCCeeeEEEecccc--eeeccCCceEEEeeecc
Confidence 334677788865554 66888899999999754
No 209
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=95.59 E-value=2.5 Score=41.15 Aligned_cols=175 Identities=13% Similarity=0.048 Sum_probs=88.9
Q ss_pred EEEc-CCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe
Q 019290 40 LAFD-CNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG 118 (343)
Q Consensus 40 l~~d-~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g 118 (343)
+|+. .++..++++.++..+..|...+..-..+. ......+.++.... ++.+.-+.+...
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-------------------kgH~snVC~ls~~~-~~~~iSgSWD~T 123 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL-------------------KGHKSNVCSLSIGE-DGTLISGSWDST 123 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCchhhh-------------------hccccceeeeecCC-cCceEecccccc
Confidence 5555 45445888888888888877654311111 12223455666565 566554433332
Q ss_pred EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec
Q 019290 119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN 198 (343)
Q Consensus 119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 198 (343)
+.++-.. +.... ..+. ...+-.++.-++ + .|++.+. ...|..|... ...+.+..
T Consensus 124 akvW~~~--~l~~~---l~gH-~asVWAv~~l~e-~-~~vTgsa-----------------DKtIklWk~~-~~l~tf~g 177 (745)
T KOG0301|consen 124 AKVWRIG--ELVYS---LQGH-TASVWAVASLPE-N-TYVTGSA-----------------DKTIKLWKGG-TLLKTFSG 177 (745)
T ss_pred eEEecch--hhhcc---cCCc-chheeeeeecCC-C-cEEeccC-----------------cceeeeccCC-chhhhhcc
Confidence 3333221 11111 1111 123445556663 5 6776554 3345555432 23344444
Q ss_pred CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290 199 GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 199 ~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
+.....++++-++...|-+ .+++.|..|++++.. ...+.....+...+....++.+.+++..
T Consensus 178 HtD~VRgL~vl~~~~flSc--sNDg~Ir~w~~~ge~----l~~~~ghtn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDSHFLSC--SNDGSIRLWDLDGEV----LLEMHGHTNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred chhheeeeEEecCCCeEee--cCCceEEEEeccCce----eeeeeccceEEEEEEecCCCCeEEEecC
Confidence 4455789999888776544 457889999987632 2222111122223332334557777766
No 210
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=1.8 Score=41.63 Aligned_cols=166 Identities=12% Similarity=0.076 Sum_probs=99.1
Q ss_pred ccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC
Q 019290 27 QQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP 105 (343)
Q Consensus 27 ~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~ 105 (343)
+.+++...+- +.-.+-...+.+.++..+.+|..|+.+|.+ ++.|. ........|+++|
T Consensus 49 ksfeV~~~Pv-Ra~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~Fe--------------------AH~DyIR~iavHP 107 (794)
T KOG0276|consen 49 KSFEVSEVPV-RAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFE--------------------AHSDYIRSIAVHP 107 (794)
T ss_pred eeeeecccch-hhheeeeccceEEEecCCceEEEEecccceeeEEee--------------------ccccceeeeeecC
Confidence 4555544322 333444556756688899999999998864 33442 2333567888998
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290 106 VTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK 185 (343)
Q Consensus 106 ~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 185 (343)
.+-.++-+....-|-.+|-+. .+... +..++. ...+.++++.|+|.+-+++..- ...-+||.
T Consensus 108 t~P~vLtsSDDm~iKlW~we~-~wa~~-qtfeGH-~HyVMqv~fnPkD~ntFaS~sL---------------DrTVKVWs 169 (794)
T KOG0276|consen 108 TLPYVLTSSDDMTIKLWDWEN-EWACE-QTFEGH-EHYVMQVAFNPKDPNTFASASL---------------DRTVKVWS 169 (794)
T ss_pred CCCeEEecCCccEEEEeeccC-ceeee-eEEcCc-ceEEEEEEecCCCccceeeeec---------------cccEEEEE
Confidence 444455443223355666653 33321 222332 2568899999987777775542 11445676
Q ss_pred EeCCCCceEEeecCCCCcceeEEecCCCE-EEEEEcCCCeEEEEEccC
Q 019290 186 YDPLKKNVTVMYNGLSFPNGVALSNNNSF-LLLAESATLKILRFWLQG 232 (343)
Q Consensus 186 ~d~~~~~~~~~~~~~~~~~~i~~~~d~~~-lyv~~~~~~~i~~~~~~~ 232 (343)
+......+ ++...-.+.|.+++.+.|.. ..++...+..|-+||.++
T Consensus 170 lgs~~~nf-Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 170 LGSPHPNF-TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred cCCCCCce-eeeccccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence 65433333 44555677899988775543 345667778888898765
No 211
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.53 E-value=2 Score=39.67 Aligned_cols=144 Identities=17% Similarity=0.248 Sum_probs=78.5
Q ss_pred EcCCCCeeEEEecCCEEEEEEcCCCC--eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe-
Q 019290 42 FDCNGEGPYVGVSDGRILKWKAANSG--WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG- 118 (343)
Q Consensus 42 ~d~~g~~l~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g- 118 (343)
.+.+|+ +|+...+|.|+.+|+.++. |..-.. .......+-.+.. +|+||+++ ..|
T Consensus 65 ~~~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~-------------------~~~~~~~~~~~~~-~G~i~~g~-~~g~ 122 (370)
T COG1520 65 ADGDGT-VYVGTRDGNIFALNPDTGLVKWSYPLL-------------------GAVAQLSGPILGS-DGKIYVGS-WDGK 122 (370)
T ss_pred EeeCCe-EEEecCCCcEEEEeCCCCcEEecccCc-------------------CcceeccCceEEe-CCeEEEec-ccce
Confidence 566777 7777788899999998865 221110 0001112222233 68899996 556
Q ss_pred EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee-
Q 019290 119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY- 197 (343)
Q Consensus 119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~- 197 (343)
++.+|.++|+......... . ....+-++-. ++.+|+... .+.++.++.++|+..-..
T Consensus 123 ~y~ld~~~G~~~W~~~~~~-~--~~~~~~~v~~-~~~v~~~s~------------------~g~~~al~~~tG~~~W~~~ 180 (370)
T COG1520 123 LYALDASTGTLVWSRNVGG-S--PYYASPPVVG-DGTVYVGTD------------------DGHLYALNADTGTLKWTYE 180 (370)
T ss_pred EEEEECCCCcEEEEEecCC-C--eEEecCcEEc-CcEEEEecC------------------CCeEEEEEccCCcEEEEEe
Confidence 9999997787665433222 0 1112223334 488888641 356888887766653211
Q ss_pred -c---CCCCcceeEEecCCCEEEEEEcC-CCeEEEEEcc
Q 019290 198 -N---GLSFPNGVALSNNNSFLLLAESA-TLKILRFWLQ 231 (343)
Q Consensus 198 -~---~~~~~~~i~~~~d~~~lyv~~~~-~~~i~~~~~~ 231 (343)
. ......... . ....+|+.... ++.++.++..
T Consensus 181 ~~~~~~~~~~~~~~-~-~~~~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 181 TPAPLSLSIYGSPA-I-ASGTVYVGSDGYDGILYALNAE 217 (370)
T ss_pred cCCccccccccCce-e-ecceEEEecCCCcceEEEEEcc
Confidence 1 111111222 2 23457776542 4478888874
No 212
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.50 E-value=1.7 Score=40.71 Aligned_cols=116 Identities=14% Similarity=0.092 Sum_probs=76.1
Q ss_pred CCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290 96 GRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA 175 (343)
Q Consensus 96 ~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~ 175 (343)
+......+.++++.|.++.....+-.+|+..-..+.-...... ...+..+++.+ |-++-|+--+
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltss--apaCyALa~sp-DakvcFsccs------------- 529 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSS--APACYALAISP-DAKVCFSCCS------------- 529 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCc--chhhhhhhcCC-ccceeeeecc-------------
Confidence 3456777888567788885545588888875443322222111 13467788888 6888886544
Q ss_pred ecCCCceEEEEeCCCCce-EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 176 TGDRSGRLLKYDPLKKNV-TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 176 ~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.|.|..||.....+ +.+...-.....|.+++||..|| +.--+++|..||+..
T Consensus 530 ----dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlre 582 (705)
T KOG0639|consen 530 ----DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLRE 582 (705)
T ss_pred ----CCcEEEEEcccceeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhh
Confidence 56788888764433 33333445678899999987654 555688999999865
No 213
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.48 E-value=1.5 Score=37.79 Aligned_cols=151 Identities=13% Similarity=0.028 Sum_probs=83.7
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCC-cCCeeeEEEeCCCCeEEEEe
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPL-CGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~gi~~~~~~~~l~v~~ 114 (343)
+|--++-|. .+.+|++.+.+++...|+.++++.- +.. ..+..+-+.-- ++.+.++-
T Consensus 14 spLVV~~ds-kT~v~igSHs~~~~avd~~sG~~~W---------------------e~ilg~RiE~sa~vv-gdfVV~GC 70 (354)
T KOG4649|consen 14 SPLVVCNDS-KTLVVIGSHSGIVIAVDPQSGNLIW---------------------EAILGVRIECSAIVV-GDFVVLGC 70 (354)
T ss_pred CcEEEecCC-ceEEEEecCCceEEEecCCCCcEEe---------------------ehhhCceeeeeeEEE-CCEEEEEE
Confidence 344444444 4558899999999999998876431 111 11222222222 45677775
Q ss_pred CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290 115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT 194 (343)
Q Consensus 115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 194 (343)
...++|.++.++|..-+.....+. --.....|...|-+|.+.. .+..|.+|+.+..-.
T Consensus 71 y~g~lYfl~~~tGs~~w~f~~~~~----vk~~a~~d~~~glIycgsh------------------d~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 71 YSGGLYFLCVKTGSQIWNFVILET----VKVRAQCDFDGGLIYCGSH------------------DGNFYALDPKTYGCV 128 (354)
T ss_pred ccCcEEEEEecchhheeeeeehhh----hccceEEcCCCceEEEecC------------------CCcEEEecccccceE
Confidence 445699999998842222111111 0122345553356676432 456888887643321
Q ss_pred -EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 195 -VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 195 -~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
....++....+-++++-...||++.+ .+.+.+.+...
T Consensus 129 ykskcgG~~f~sP~i~~g~~sly~a~t-~G~vlavt~~~ 166 (354)
T KOG4649|consen 129 YKSKCGGGTFVSPVIAPGDGSLYAAIT-AGAVLAVTKNP 166 (354)
T ss_pred EecccCCceeccceecCCCceEEEEec-cceEEEEccCC
Confidence 12223344455566664456999865 67888877654
No 214
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.45 E-value=3 Score=41.13 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=62.3
Q ss_pred ccccccccCCCC-CCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290 23 SKSYQQLQLPGV-VGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI 101 (343)
Q Consensus 23 ~~~~~~~~~~~~-~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi 101 (343)
+.....++.++- ....++++..+.. +..+..++.+-.|+..+.+..+= -+++...+.
T Consensus 361 ~~~~~~i~~~GHR~dVRsl~vS~d~~-~~~Sga~~SikiWn~~t~kciRT---------------------i~~~y~l~~ 418 (888)
T KOG0306|consen 361 ADRTSNIEIGGHRSDVRSLCVSSDSI-LLASGAGESIKIWNRDTLKCIRT---------------------ITCGYILAS 418 (888)
T ss_pred ccccceeeeccchhheeEEEeecCce-eeeecCCCcEEEEEccCcceeEE---------------------eccccEEEE
Confidence 344555777632 2478999998877 44444667788898876443211 123356677
Q ss_pred EEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEe
Q 019290 102 KFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTD 160 (343)
Q Consensus 102 ~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~ 160 (343)
.+-|.+..+.++ +.+| +..||..+...-......+ ..+-+++..| |+.=+++.
T Consensus 419 ~Fvpgd~~Iv~G-~k~Gel~vfdlaS~~l~Eti~AHd----gaIWsi~~~p-D~~g~vT~ 472 (888)
T KOG0306|consen 419 KFVPGDRYIVLG-TKNGELQVFDLASASLVETIRAHD----GAIWSISLSP-DNKGFVTG 472 (888)
T ss_pred EecCCCceEEEe-ccCCceEEEEeehhhhhhhhhccc----cceeeeeecC-CCCceEEe
Confidence 777745556666 4566 8888876544322222111 2345556656 35544443
No 215
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=95.38 E-value=1.3 Score=39.99 Aligned_cols=173 Identities=16% Similarity=0.194 Sum_probs=104.2
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccc-cccCCCCCcc-----cCCCcCCeeeEEEeCCCCe
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAR-EICDGSTNTT-----LEPLCGRPLGIKFNPVTCD 109 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~p~gi~~~~~~~~ 109 (343)
..+++..+++|..+..+..+..|-.|+..+.....+......+.. ....+.+..+ .......+-.+.+.+ ...
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v 273 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV 273 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence 478999999999888888888888888433333333222110000 0000000000 000111233455665 677
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC
Q 019290 110 LYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL 189 (343)
Q Consensus 110 l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 189 (343)
+|-+...+-|..+|+++++...-.... ..++.+...+ ...|.++..+ ...+..+||.
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~~~-----ksl~~i~~~~-~~~Ll~~gss-----------------dr~irl~DPR 330 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLTTN-----KSLNCISYSP-LSKLLASGSS-----------------DRHIRLWDPR 330 (423)
T ss_pred eEeecccceEEEEEeecccceeeeecC-----cceeEeeccc-ccceeeecCC-----------------CCceeecCCC
Confidence 888766667999999988654322211 3467788888 4777775543 3346678987
Q ss_pred CCceEE----eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 190 KKNVTV----MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 190 ~~~~~~----~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
++.-.. +...-....++..+|...+.+++.+.++.+..||...
T Consensus 331 ~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 331 TGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred CCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 654332 2333345677888888888999999999999999764
No 216
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.27 E-value=2.4 Score=39.74 Aligned_cols=130 Identities=13% Similarity=0.012 Sum_probs=72.2
Q ss_pred CceEEEEeCCCCceEEeecCC--CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCC
Q 019290 180 SGRLLKYDPLKKNVTVMYNGL--SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDS 256 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~~~~~~~--~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~ 256 (343)
.|.|......++....-.... ....-+.+++..+.|..+....|.|..||..+... +-.+.+ -..-..|+|+.+
T Consensus 142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp---~~~~~~~HsAP~~gicfsp 218 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP---IFHASEAHSAPCRGICFSP 218 (673)
T ss_pred CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc---ccchhhhccCCcCcceecC
Confidence 455666666655443222111 12234566777788888878899999999876322 111111 112247899999
Q ss_pred CCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCE-E--EEeeCCCCCccCCceeEEE-eCCEEEEec
Q 019290 257 KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNV-V--DVLDGNEGNTLNSVSEVQE-YGEYLYTGS 332 (343)
Q Consensus 257 ~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~-~--~~~~~~~~~~~~~~~~~~~-~~g~l~i~~ 332 (343)
.....+++.+ . ...|+-||..-+. . ..+.. ..+.+.. ..|.+..++
T Consensus 219 sne~l~vsVG--~---------------------Dkki~~yD~~s~~s~~~l~y~~-------Plstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 219 SNEALLVSVG--Y---------------------DKKINIYDIRSQASTDRLTYSH-------PLSTVAFSECGTYLCAG 268 (673)
T ss_pred CccceEEEec--c---------------------cceEEEeecccccccceeeecC-------CcceeeecCCceEEEee
Confidence 8876666554 2 2367777754221 1 11222 2223322 366666666
Q ss_pred CCCCeEEEEc
Q 019290 333 SVQPYVVVIK 342 (343)
Q Consensus 333 ~~~~~i~~~~ 342 (343)
....+++.||
T Consensus 269 ~s~G~~i~YD 278 (673)
T KOG4378|consen 269 NSKGELIAYD 278 (673)
T ss_pred cCCceEEEEe
Confidence 6677777775
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=95.27 E-value=2.1 Score=38.44 Aligned_cols=189 Identities=12% Similarity=0.072 Sum_probs=101.1
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC-eEEEEeC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC-DLYIADA 115 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~-~l~v~~~ 115 (343)
...+++.+.=..+-++.++.-|..|+.+....+.++. ........++..|-.. .+-|+ .
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks-------------------~sQrnvtclawRPlsaselavg-C 160 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKS-------------------VSQRNVTCLAWRPLSASELAVG-C 160 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCCCCCceecc-------------------hhhcceeEEEeccCCcceeeee-e
Confidence 4566666632222355677778888877654444321 1122344566655222 34455 4
Q ss_pred CCeEEEEeCC-CCeEEE---cc-----cccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290 116 YFGLMVVGPN-GGQAQQ---LA-----SSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY 186 (343)
Q Consensus 116 ~~gi~~~d~~-~~~~~~---~~-----~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 186 (343)
..||..+..+ +....+ .. +.........+.++...+ ||..|++.+-. ...+..+
T Consensus 161 r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~-dgt~l~tAS~g----------------sssi~iW 223 (445)
T KOG2139|consen 161 RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNE-DGTILVTASFG----------------SSSIMIW 223 (445)
T ss_pred cceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcC-CCCEEeecccC----------------cceEEEE
Confidence 5665444321 111111 10 111222234566777777 68888876531 3457888
Q ss_pred eCCCCceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCC-EEEEe
Q 019290 187 DPLKKNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGE-FWIAM 264 (343)
Q Consensus 187 d~~~~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwi~~ 264 (343)
|++++....+. .++....-+.++||+..++.+.. +.....|....... .+ ...-..+...+-+-+++|+ |.++.
T Consensus 224 dpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~-davfrlw~e~q~wt-~e--rw~lgsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 224 DPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC-DAVFRLWQENQSWT-KE--RWILGSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred cCCCCCcccccccCCCceeeEEEcCCCCEEEEecc-cceeeeehhcccce-ec--ceeccCCceeeeeecCCCCEEEEEE
Confidence 98888776655 44555667889999998777643 44444554432222 22 2222344455567789885 55555
Q ss_pred cc
Q 019290 265 NS 266 (343)
Q Consensus 265 ~~ 266 (343)
..
T Consensus 300 sg 301 (445)
T KOG2139|consen 300 SG 301 (445)
T ss_pred cC
Confidence 54
No 218
>PRK13684 Ycf48-like protein; Provisional
Probab=95.23 E-value=2.3 Score=38.66 Aligned_cols=188 Identities=12% Similarity=-0.004 Sum_probs=90.8
Q ss_pred eeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290 98 PLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG 177 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~ 177 (343)
+..+.... .+.+|++.....|++-+-.+..++.+.... ...++++..++ ++.+++...
T Consensus 134 ~~~i~~~~-~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~----~g~~~~i~~~~-~g~~v~~g~---------------- 191 (334)
T PRK13684 134 PYLITALG-PGTAEMATNVGAIYRTTDGGKNWEALVEDA----AGVVRNLRRSP-DGKYVAVSS---------------- 191 (334)
T ss_pred ceEEEEEC-CCcceeeeccceEEEECCCCCCceeCcCCC----cceEEEEEECC-CCeEEEEeC----------------
Confidence 34444443 455676643334666554444555543221 23577888888 476665332
Q ss_pred CCCceEEEEeCCCC-ceEEeecC-CCCcceeEEecCCCEEEEEEcCCCeEEEEE-ccCccccccceeee-c-C-C-CCCC
Q 019290 178 DRSGRLLKYDPLKK-NVTVMYNG-LSFPNGVALSNNNSFLLLAESATLKILRFW-LQGERTTYTPQLFA-E-M-P-RFPD 250 (343)
Q Consensus 178 ~~~~~v~~~d~~~~-~~~~~~~~-~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~-~~~~~~~~~~~~~~-~-~-~-~~p~ 250 (343)
.|.+++-..+.+ ..+.+... .....++++.++++ +++... .+.+ ++. .++. ...+... . . . ....
T Consensus 192 --~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~-~G~~-~~~s~d~G---~sW~~~~~~~~~~~~~l~ 263 (334)
T PRK13684 192 --RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLAR-GGQI-RFNDPDDL---ESWSKPIIPEITNGYGYL 263 (334)
T ss_pred --CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEec-CCEE-EEccCCCC---CccccccCCcccccccee
Confidence 345665422223 34433322 23457778877776 555543 3444 442 3321 1111111 0 0 0 0123
Q ss_pred ceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEE-EeCCEEE
Q 019290 251 NIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQ-EYGEYLY 329 (343)
Q Consensus 251 ~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~ 329 (343)
.+.+.+++.+|++... +.+++-...|+.-.....+.... .....+. .+++++|
T Consensus 264 ~v~~~~~~~~~~~G~~-------------------------G~v~~S~d~G~tW~~~~~~~~~~-~~~~~~~~~~~~~~~ 317 (334)
T PRK13684 264 DLAYRTPGEIWAGGGN-------------------------GTLLVSKDGGKTWEKDPVGEEVP-SNFYKIVFLDPEKGF 317 (334)
T ss_pred eEEEcCCCCEEEEcCC-------------------------CeEEEeCCCCCCCeECCcCCCCC-cceEEEEEeCCCceE
Confidence 4566778899998765 34554434456545443222322 2343333 3467777
Q ss_pred EecCCCCeEEEEc
Q 019290 330 TGSSVQPYVVVIK 342 (343)
Q Consensus 330 i~~~~~~~i~~~~ 342 (343)
+.+.. ..|++++
T Consensus 318 ~~G~~-G~il~~~ 329 (334)
T PRK13684 318 VLGQR-GVLLRYV 329 (334)
T ss_pred EECCC-ceEEEec
Confidence 65443 3465554
No 219
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=95.23 E-value=1.7 Score=37.00 Aligned_cols=111 Identities=16% Similarity=0.189 Sum_probs=65.7
Q ss_pred CeeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290 97 RPLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA 175 (343)
Q Consensus 97 ~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~ 175 (343)
..+.|.++|..|.++++. +++ ++.+|+++|+++....... ..++.++-....+.++-+
T Consensus 116 eINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHt----DYvH~vv~R~~~~qilsG---------------- 174 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHT----DYVHSVVGRNANGQILSG---------------- 174 (325)
T ss_pred ccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCc----ceeeeeeecccCcceeec----------------
Confidence 467899998889999995 666 9999999999987654433 346676653323555442
Q ss_pred ecCCCceEEEEeCCCCceEEeecCC-----CCc-ce---eEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 176 TGDRSGRLLKYDPLKKNVTVMYNGL-----SFP-NG---VALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 176 ~~~~~~~v~~~d~~~~~~~~~~~~~-----~~~-~~---i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
...|.+..+|.++++-....... ..| ++ .|+.-+...|.+. .+..+..|++..
T Consensus 175 --~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG--gGp~lslwhLrs 236 (325)
T KOG0649|consen 175 --AEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG--GGPKLSLWHLRS 236 (325)
T ss_pred --CCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEec--CCCceeEEeccC
Confidence 22456777787766543222111 111 11 2344445544443 345566676654
No 220
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.22 E-value=2.2 Score=38.34 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=56.8
Q ss_pred EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE-eCCCCce-EEe
Q 019290 119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY-DPLKKNV-TVM 196 (343)
Q Consensus 119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~-d~~~~~~-~~~ 196 (343)
|+.+|..+-+......... ..+-.+++++ +|.+..+.+. +|.|.|+ ....|+. ..+
T Consensus 155 V~l~d~~nl~~v~~I~aH~----~~lAalafs~-~G~llATASe-----------------KGTVIRVf~v~~G~kl~eF 212 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHK----GPLAALAFSP-DGTLLATASE-----------------KGTVIRVFSVPEGQKLYEF 212 (391)
T ss_pred EEEEEcccceeeeEEEecC----CceeEEEECC-CCCEEEEecc-----------------CceEEEEEEcCCccEeeee
Confidence 8888876533222222222 3466789999 6999887765 5565553 4444543 222
Q ss_pred ecCC--CCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 197 YNGL--SFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 197 ~~~~--~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
-.+. .....++|++++..|-++ +..++|.+|.++.
T Consensus 213 RRG~~~~~IySL~Fs~ds~~L~~s-S~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 213 RRGTYPVSIYSLSFSPDSQFLAAS-SNTETVHIFKLEK 249 (391)
T ss_pred eCCceeeEEEEEEECCCCCeEEEe-cCCCeEEEEEecc
Confidence 2221 235678999999877665 4678999998764
No 221
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.11 E-value=2.8 Score=39.02 Aligned_cols=131 Identities=11% Similarity=-0.039 Sum_probs=65.7
Q ss_pred CceEEEEeCCCCc-eEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecC--CC---CCCce
Q 019290 180 SGRLLKYDPLKKN-VTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEM--PR---FPDNI 252 (343)
Q Consensus 180 ~~~v~~~d~~~~~-~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~---~p~~i 252 (343)
.|.+++-...+.. ...+. .......++.+.+++. ++++. ..+.+++-+.++.. -+...+.+. +. ....+
T Consensus 258 ~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g-~~G~l~~S~d~G~~--~~~~~f~~~~~~~~~~~l~~v 333 (398)
T PLN00033 258 RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWLLT-RGGGLYVSKGTGLT--EEDFDFEEADIKSRGFGILDV 333 (398)
T ss_pred CccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEEEe-CCceEEEecCCCCc--ccccceeecccCCCCcceEEE
Confidence 3556665444333 23222 2223456777777776 55554 35667665433311 000012211 11 12335
Q ss_pred eeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEE-EeCCEEEEe
Q 019290 253 KSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQ-EYGEYLYTG 331 (343)
Q Consensus 253 ~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~i~ 331 (343)
...+++.+|++... +.+++-...|+.-......++ .....+.+. .++++.|+.
T Consensus 334 ~~~~d~~~~a~G~~-------------------------G~v~~s~D~G~tW~~~~~~~~-~~~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 334 GYRSKKEAWAAGGS-------------------------GILLRSTDGGKSWKRDKGADN-IAANLYSVKFFDDKKGFVL 387 (398)
T ss_pred EEcCCCcEEEEECC-------------------------CcEEEeCCCCcceeEccccCC-CCcceeEEEEcCCCceEEE
Confidence 56778999999876 244444456766555432222 122334444 446888887
Q ss_pred cCCCCeEEEE
Q 019290 332 SSVQPYVVVI 341 (343)
Q Consensus 332 ~~~~~~i~~~ 341 (343)
+.+. .|+||
T Consensus 388 G~~G-~il~~ 396 (398)
T PLN00033 388 GNDG-VLLRY 396 (398)
T ss_pred eCCc-EEEEe
Confidence 7554 35555
No 222
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.05 E-value=1.8 Score=40.55 Aligned_cols=112 Identities=14% Similarity=0.128 Sum_probs=66.1
Q ss_pred eeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290 99 LGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG 177 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~ 177 (343)
.-+.+++.++.++.....+| |..+|..+.....-+..... .-..+|++.|- +...+..-+.
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs---AP~~gicfsps-ne~l~vsVG~-------------- 229 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS---APCRGICFSPS-NEALLVSVGY-------------- 229 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhcc---CCcCcceecCC-ccceEEEecc--------------
Confidence 35667775666666655677 77888764322111111122 23678999985 5544433221
Q ss_pred CCCceEEEEeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 178 DRSGRLLKYDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 178 ~~~~~v~~~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
..+|+.||....... ++.. -.....++|.++|.+| ++.+..|+|+.||+.+
T Consensus 230 --Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L-~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 230 --DKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYL-CAGNSKGELIAYDMRS 281 (673)
T ss_pred --cceEEEeecccccccceeee-cCCcceeeecCCceEE-EeecCCceEEEEeccc
Confidence 467999997643322 2221 1224678898888654 5566789999999865
No 223
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=95.04 E-value=1.9 Score=36.67 Aligned_cols=74 Identities=15% Similarity=0.234 Sum_probs=49.3
Q ss_pred CccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCC-CcceeEE-ecCCCEEEE
Q 019290 140 PFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLS-FPNGVAL-SNNNSFLLL 217 (343)
Q Consensus 140 ~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~i~~-~~d~~~lyv 217 (343)
+..-+|.+.+||..|.++++. +.+.+|.+|.++|++++...+-. ..-.++. ...++ +.
T Consensus 113 evPeINam~ldP~enSi~~Ag------------------GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q--il 172 (325)
T KOG0649|consen 113 EVPEINAMWLDPSENSILFAG------------------GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ--IL 172 (325)
T ss_pred cCCccceeEeccCCCcEEEec------------------CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc--ee
Confidence 345689999998668888844 25679999999999876543322 1222322 23344 34
Q ss_pred EEcCCCeEEEEEccCc
Q 019290 218 AESATLKILRFWLQGE 233 (343)
Q Consensus 218 ~~~~~~~i~~~~~~~~ 233 (343)
+...++.+..||..+.
T Consensus 173 sG~EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQ 188 (325)
T ss_pred ecCCCccEEEEecccc
Confidence 6667889999998764
No 224
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.02 E-value=2.5 Score=37.93 Aligned_cols=153 Identities=12% Similarity=0.053 Sum_probs=89.3
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY 116 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~ 116 (343)
.-.+...|+.+...++..+..-+.|+..++++..-. ......+..+.|+- ++.++.+..-
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-------------------tgHKDSVt~~~Fsh-dgtlLATGdm 126 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-------------------TGHKDSVTCCSFSH-DGTLLATGDM 126 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-------------------cCCCCceEEEEEcc-CceEEEecCC
Confidence 456677786664446667778888888877632111 11112345677776 6665554323
Q ss_pred Ce-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC-CceE
Q 019290 117 FG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK-KNVT 194 (343)
Q Consensus 117 ~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~ 194 (343)
.| |+.+...++..+.... .+..-+.=+...|. +.+.++-. ..|.+|.|.... +..+
T Consensus 127 sG~v~v~~~stg~~~~~~~----~e~~dieWl~WHp~-a~illAG~-----------------~DGsvWmw~ip~~~~~k 184 (399)
T KOG0296|consen 127 SGKVLVFKVSTGGEQWKLD----QEVEDIEWLKWHPR-AHILLAGS-----------------TDGSVWMWQIPSQALCK 184 (399)
T ss_pred CccEEEEEcccCceEEEee----cccCceEEEEeccc-ccEEEeec-----------------CCCcEEEEECCCcceee
Confidence 55 7777777766554322 11122333456674 66666433 267899998765 3333
Q ss_pred EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 195 VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 195 ~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.+.......+.=.+.|||+.+... ..++.|.+|++.+
T Consensus 185 v~~Gh~~~ct~G~f~pdGKr~~tg-y~dgti~~Wn~kt 221 (399)
T KOG0296|consen 185 VMSGHNSPCTCGEFIPDGKRILTG-YDDGTIIVWNPKT 221 (399)
T ss_pred EecCCCCCcccccccCCCceEEEE-ecCceEEEEecCC
Confidence 333333333444577899876655 4589999999875
No 225
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=95.00 E-value=3 Score=38.72 Aligned_cols=152 Identities=15% Similarity=0.146 Sum_probs=91.2
Q ss_pred CCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 35 VGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 35 ~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
....+|++..+|+.|.++..+|.+..|+..+.....+. ...+.+..+.... +|+..++.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~--------------------~HkgPI~slKWnk-~G~yilS~ 294 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLG--------------------QHKGPIFSLKWNK-KGTYILSG 294 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhh--------------------ccCCceEEEEEcC-CCCEEEec
Confidence 35779999999998889999999999988775433321 1223456777777 55443332
Q ss_pred CCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCC-CCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290 115 AYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPN-TGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN 192 (343)
Q Consensus 115 ~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 192 (343)
...+ +..+|..+|.+......... + .+.++.. +..+-.+... +.-.|++++.++.
T Consensus 295 ~vD~ttilwd~~~g~~~q~f~~~s~-----~-~lDVdW~~~~~F~ts~td----------------~~i~V~kv~~~~P- 351 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTVKQQFEFHSA-----P-ALDVDWQSNDEFATSSTD----------------GCIHVCKVGEDRP- 351 (524)
T ss_pred cCCccEEEEeccCceEEEeeeeccC-----C-ccceEEecCceEeecCCC----------------ceEEEEEecCCCc-
Confidence 3444 78889888877654333221 1 2223321 1222221111 0234666665532
Q ss_pred eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290 193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ 231 (343)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~ 231 (343)
...+...-...+++.+.+.+. |..+.+.++++-.|...
T Consensus 352 ~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 352 VKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMG 389 (524)
T ss_pred ceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecC
Confidence 334444556688999998886 55666778889888854
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=94.96 E-value=2.7 Score=37.87 Aligned_cols=145 Identities=18% Similarity=0.245 Sum_probs=87.6
Q ss_pred eeeEEEeCCCCeEEEEeCC--CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290 98 PLGIKFNPVTCDLYIADAY--FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA 175 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~ 175 (343)
+..|...+ ++..|+.... ..|..+|++++...++.... .....-+...| ||..+++..-
T Consensus 198 Vtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g----lgg~slLkwSP-dgd~lfaAt~------------- 258 (445)
T KOG2139|consen 198 VTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKG----LGGFSLLKWSP-DGDVLFAATC------------- 258 (445)
T ss_pred eeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccC----CCceeeEEEcC-CCCEEEEecc-------------
Confidence 45777887 6777776433 34999999999887775221 13355678889 5776665532
Q ss_pred ecCCCceEEEEeCCCCce--EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCcccc-------ccceeeecC-
Q 019290 176 TGDRSGRLLKYDPLKKNV--TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTT-------YTPQLFAEM- 245 (343)
Q Consensus 176 ~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~- 245 (343)
..++++=..+... ++-..+.....+.+++|.|+.|.++-.....||....++.... .+...++++
T Consensus 259 -----davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 259 -----DAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred -----cceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 1244332111111 1111222356788899999999998888889988876643210 111222221
Q ss_pred -----------CCCCCceeeCCCCCEEEEecc
Q 019290 246 -----------PRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 246 -----------~~~p~~i~~d~~G~lwi~~~~ 266 (343)
.+.+..|+-|+.|+.....-.
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 234666889999977666654
No 227
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=94.87 E-value=2.5 Score=37.05 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=76.3
Q ss_pred cCCeeeEEEeCCCCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceee
Q 019290 95 CGRPLGIKFNPVTCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMS 173 (343)
Q Consensus 95 ~~~p~gi~~~~~~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~ 173 (343)
.+.++-+.|+| +|..+++...+ .|+.++..+. -+.+.... +. -..+.++...+ |++..++...
T Consensus 47 ~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lk-gH-sgAVM~l~~~~-d~s~i~S~gt----------- 110 (338)
T KOG0265|consen 47 KGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGD-CENFWVLK-GH-SGAVMELHGMR-DGSHILSCGT----------- 110 (338)
T ss_pred cceEEEEEECC-CCCeEeecCCcceEEEEecccc-ccceeeec-cc-cceeEeeeecc-CCCEEEEecC-----------
Confidence 44567788999 88877764333 4777775422 22221111 11 13466777777 5887776654
Q ss_pred eeecCCCceEEEEeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 174 IATGDRSGRLLKYDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 174 ~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
...|..||.++|+.. ....+....|.++....|-.|..+.+.++++..||...
T Consensus 111 ------Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 111 ------DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred ------CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 457999999888754 33344456777776667778889988999999999764
No 228
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=94.86 E-value=2.3 Score=36.70 Aligned_cols=156 Identities=12% Similarity=0.067 Sum_probs=94.0
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
..+++++.|.|+.|-++..+..+..|....+++..+.. ++..-+.+.++++++ +|+++-..+
T Consensus 63 sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~-----------------lEGHEnEVK~Vaws~-sG~~LATCS 124 (312)
T KOG0645|consen 63 SVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVAT-----------------LEGHENEVKCVAWSA-SGNYLATCS 124 (312)
T ss_pred eeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEee-----------------eeccccceeEEEEcC-CCCEEEEee
Confidence 58899999999977788999999999888777776532 223344678899998 555544322
Q ss_pred -CCeEEEEeC-CCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290 116 -YFGLMVVGP-NGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV 193 (343)
Q Consensus 116 -~~gi~~~d~-~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 193 (343)
...++.+.. +.+++...+-. ++. ..-+..+...|. ..|.++-+.. ..-++|+.++ ....
T Consensus 125 RDKSVWiWe~deddEfec~aVL-~~H-tqDVK~V~WHPt-~dlL~S~SYD---------------nTIk~~~~~~-dddW 185 (312)
T KOG0645|consen 125 RDKSVWIWEIDEDDEFECIAVL-QEH-TQDVKHVIWHPT-EDLLFSCSYD---------------NTIKVYRDED-DDDW 185 (312)
T ss_pred CCCeEEEEEecCCCcEEEEeee-ccc-cccccEEEEcCC-cceeEEeccC---------------CeEEEEeecC-CCCe
Confidence 344555443 33455544322 111 123556778884 6777765431 1345666554 3444
Q ss_pred EE---eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEE
Q 019290 194 TV---MYNGLSFPNGVALSNNNSFLLLAESATLKILRFW 229 (343)
Q Consensus 194 ~~---~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~ 229 (343)
.. +...-.+.-+++|++.|..|..+ +..+.+..|.
T Consensus 186 ~c~~tl~g~~~TVW~~~F~~~G~rl~s~-sdD~tv~Iw~ 223 (312)
T KOG0645|consen 186 ECVQTLDGHENTVWSLAFDNIGSRLVSC-SDDGTVSIWR 223 (312)
T ss_pred eEEEEecCccceEEEEEecCCCceEEEe-cCCcceEeee
Confidence 32 22222356788999988776544 3455555554
No 229
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=94.84 E-value=2.2 Score=38.88 Aligned_cols=102 Identities=16% Similarity=0.034 Sum_probs=62.2
Q ss_pred CceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCC-----Cceee
Q 019290 180 SGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFP-----DNIKS 254 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p-----~~i~~ 254 (343)
..+|-.||..+.....-.........+.++.++..+..+ +.++.+-++|+.+ .++......+++- .-.++
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt----~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRT----KEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred ccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeeccc----ccEEEEeeccccccccccceeEE
Confidence 345667775555544434444567778888888777665 5678888888766 3333333222221 22578
Q ss_pred CCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCEEEEeeCC
Q 019290 255 DSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNVVDVLDGN 310 (343)
Q Consensus 255 d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~ 310 (343)
+|+|.+..+... .+.|+..+.. ||.......+
T Consensus 396 Spd~~YvaAGS~------------------------dgsv~iW~v~tgKlE~~l~~s 428 (459)
T KOG0288|consen 396 SPDGSYVAAGSA------------------------DGSVYIWSVFTGKLEKVLSLS 428 (459)
T ss_pred CCCCceeeeccC------------------------CCcEEEEEccCceEEEEeccC
Confidence 898876666544 4588888874 5655555543
No 230
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.64 E-value=1.3 Score=39.76 Aligned_cols=51 Identities=10% Similarity=0.106 Sum_probs=36.9
Q ss_pred CceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290 180 SGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ 231 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~ 231 (343)
...|+.||...+....-..-...+|+|++.| +...+++...+..+|.||+.
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred CCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhh
Confidence 4568889986555422112235689999999 66788888889999999864
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=94.57 E-value=1.3 Score=42.23 Aligned_cols=161 Identities=12% Similarity=0.141 Sum_probs=84.8
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC-eEEEEeC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC-DLYIADA 115 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~-~l~v~~~ 115 (343)
...+-+.+-..++.+++.+|.+-.||+.+.+..-......... +.. | ......+..+.|.. +| ++-|++.
T Consensus 178 lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~-s~p-g------~~~~~svTal~F~d-~gL~~aVGts 248 (703)
T KOG2321|consen 178 LNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN-SHP-G------GDAAPSVTALKFRD-DGLHVAVGTS 248 (703)
T ss_pred ceeeeecCccceEEecccCceEEEecchhhhhheeeecccccC-CCc-c------ccccCcceEEEecC-CceeEEeecc
Confidence 4556666667767788899999999998754322111110000 000 0 01122366788886 44 5666643
Q ss_pred CCeEEEEeCCCCeEEEcccccCCCCccCcceeEE---eCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290 116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDI---DPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN 192 (343)
Q Consensus 116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~---d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 192 (343)
...++.||+++.+.-.+..-....+ +..+.. |. ...++-.|.. -+-.||+.+|+
T Consensus 249 ~G~v~iyDLRa~~pl~~kdh~~e~p---i~~l~~~~~~~-q~~v~S~Dk~-------------------~~kiWd~~~Gk 305 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPLLVKDHGYELP---IKKLDWQDTDQ-QNKVVSMDKR-------------------ILKIWDECTGK 305 (703)
T ss_pred CCcEEEEEcccCCceeecccCCccc---eeeecccccCC-CceEEecchH-------------------HhhhcccccCC
Confidence 3349999998765432221111111 222222 22 1233332221 13335777776
Q ss_pred eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290 193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWL 230 (343)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~ 230 (343)
.-.........|.+|+-++++.++.+ ..+..+..|-+
T Consensus 306 ~~asiEpt~~lND~C~~p~sGm~f~A-ne~~~m~~yyi 342 (703)
T KOG2321|consen 306 PMASIEPTSDLNDFCFVPGSGMFFTA-NESSKMHTYYI 342 (703)
T ss_pred ceeeccccCCcCceeeecCCceEEEe-cCCCcceeEEc
Confidence 55444455668999999887644444 44555655554
No 232
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=94.53 E-value=0.68 Score=44.13 Aligned_cols=124 Identities=18% Similarity=0.322 Sum_probs=72.1
Q ss_pred CCCCCceEEEcCC-CCeeEEEecC----------------CEEEEEEcCCC-------CeEEeeecCCCccccccCCCCC
Q 019290 33 GVVGPESLAFDCN-GEGPYVGVSD----------------GRILKWKAANS-------GWTEFATTAPHRAREICDGSTN 88 (343)
Q Consensus 33 ~~~~p~~l~~d~~-g~~l~~~~~~----------------g~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 88 (343)
.+..||.|++.+. |+++++.+++ |+|++|-+.+. .|..|.....-.. .-.+...
T Consensus 415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~--~~~~~~~ 492 (616)
T COG3211 415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSV--LEGGASA 492 (616)
T ss_pred cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccc--ccccccc
Confidence 3457999999997 5544444443 46999977665 5666654432110 0000000
Q ss_pred cccCCCcCCeeeEEEeCCCCeEEEEeCC---------CeEEEE---eCCCCeEEEcccccCCCCccCcceeEEeCCCCeE
Q 019290 89 TTLEPLCGRPLGIKFNPVTCDLYIADAY---------FGLMVV---GPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIV 156 (343)
Q Consensus 89 ~~~~~~~~~p~gi~~~~~~~~l~v~~~~---------~gi~~~---d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l 156 (343)
.....-++.|.+|++++ .|+|||++.+ .|+..+ ++++++++++.....+ .-+.+.++.|+...+
T Consensus 493 ~~~~~~f~~PDnl~fD~-~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g---~E~tG~~FspD~~Tl 568 (616)
T COG3211 493 NINANWFNSPDNLAFDP-WGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIG---CEFTGPCFSPDGKTL 568 (616)
T ss_pred CcccccccCCCceEECC-CCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCc---ceeecceeCCCCceE
Confidence 00112355689999999 9999998532 133333 4455666665433322 336788899843468
Q ss_pred EEEeCC
Q 019290 157 YFTDSS 162 (343)
Q Consensus 157 ~v~~~~ 162 (343)
|++-++
T Consensus 569 FV~vQH 574 (616)
T COG3211 569 FVNVQH 574 (616)
T ss_pred EEEecC
Confidence 887665
No 233
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=94.48 E-value=4 Score=37.75 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCceEEeecCCC-CcceeEEecCCCEEEEEE
Q 019290 181 GRLLKYDPLKKNVTVMYNGLS-FPNGVALSNNNSFLLLAE 219 (343)
Q Consensus 181 ~~v~~~d~~~~~~~~~~~~~~-~~~~i~~~~d~~~lyv~~ 219 (343)
..+++||+.+.+++.+..... ...+.++...+..||+..
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~G 228 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLIN 228 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEe
Confidence 469999999888876432211 222323222244678764
No 234
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=94.48 E-value=1 Score=41.31 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=93.1
Q ss_pred CceEEEcCC--CCeeEEEecCCEEEEEEcCCCCeE--EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290 37 PESLAFDCN--GEGPYVGVSDGRILKWKAANSGWT--EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI 112 (343)
Q Consensus 37 p~~l~~d~~--g~~l~~~~~~g~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v 112 (343)
-.+|++.+. |. +..+..++.|..+|.+..... .+... .........+..+++++-...||.
T Consensus 180 g~glsWn~~~~g~-Lls~~~d~~i~lwdi~~~~~~~~~~~p~--------------~~~~~h~~~VeDV~~h~~h~~lF~ 244 (422)
T KOG0264|consen 180 GYGLSWNRQQEGT-LLSGSDDHTICLWDINAESKEDKVVDPK--------------TIFSGHEDVVEDVAWHPLHEDLFG 244 (422)
T ss_pred cccccccccccee-EeeccCCCcEEEEeccccccCCccccce--------------EEeecCCcceehhhccccchhhhe
Confidence 345666653 33 566778888888887543210 00000 000011223456667764556776
Q ss_pred EeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC
Q 019290 113 ADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK 191 (343)
Q Consensus 113 ~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 191 (343)
+...++ +..+|.++++ ... .........-++.+++.|. +...+++.+ ..+.|..+|+..-
T Consensus 245 sv~dd~~L~iwD~R~~~-~~~-~~~~~ah~~~vn~~~fnp~-~~~ilAT~S----------------~D~tV~LwDlRnL 305 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNT-SKP-SHSVKAHSAEVNCVAFNPF-NEFILATGS----------------ADKTVALWDLRNL 305 (422)
T ss_pred eecCCCeEEEEEcCCCC-CCC-cccccccCCceeEEEeCCC-CCceEEecc----------------CCCcEEEeechhc
Confidence 654455 8889988531 111 1111122245789999996 554444433 2567888887522
Q ss_pred --ceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 192 --NVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 192 --~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.+..+...-.....+.++|..+.+..+...++++.+||+..
T Consensus 306 ~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 306 NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 22233333344567888999888888888899999999864
No 235
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.33 E-value=3.3 Score=36.20 Aligned_cols=111 Identities=26% Similarity=0.308 Sum_probs=58.8
Q ss_pred CeeeEEEeCCC-CeEEEEeCCCe--EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCe-EEEEeCCccccccccee
Q 019290 97 RPLGIKFNPVT-CDLYIADAYFG--LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFM 172 (343)
Q Consensus 97 ~p~gi~~~~~~-~~l~v~~~~~g--i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~ 172 (343)
+-++|++++.- ..+.|+- .-| .+.+|+.+++.-.......+. .+.-.-++.+ ||+ ||.++..-
T Consensus 69 R~Hgi~~~p~~~ravafAR-rPGtf~~vfD~~~~~~pv~~~s~~~R--HfyGHGvfs~-dG~~LYATEndf--------- 135 (366)
T COG3490 69 RGHGIAFHPALPRAVAFAR-RPGTFAMVFDPNGAQEPVTLVSQEGR--HFYGHGVFSP-DGRLLYATENDF--------- 135 (366)
T ss_pred ccCCeecCCCCcceEEEEe-cCCceEEEECCCCCcCcEEEecccCc--eeecccccCC-CCcEEEeecCCC---------
Confidence 45778887633 3466663 333 677888776533222222222 1222345667 576 55555431
Q ss_pred eeeecCCCceEEEEeCCCCceE---EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEE
Q 019290 173 SIATGDRSGRLLKYDPLKKNVT---VMYNGLSFPNGVALSNNNSFLLLAESATLKILRF 228 (343)
Q Consensus 173 ~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~ 228 (343)
....|.|=.||... .+. .+......|-.+.+.+||+++.+++ ++|...
T Consensus 136 ----d~~rGViGvYd~r~-~fqrvgE~~t~GiGpHev~lm~DGrtlvvan---GGIeth 186 (366)
T COG3490 136 ----DPNRGVIGVYDARE-GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN---GGIETH 186 (366)
T ss_pred ----CCCCceEEEEeccc-ccceecccccCCcCcceeEEecCCcEEEEeC---Cceecc
Confidence 12234455555432 222 2233445677888889999887763 555543
No 236
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.21 E-value=4.1 Score=41.51 Aligned_cols=105 Identities=11% Similarity=0.074 Sum_probs=63.8
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
...+++++|++.++.....++.|..|+..+-+.... +....+.+.|+.+|| -|..+.+..
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v-------------------l~~H~s~VKGvs~DP-~Gky~ASqs 190 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV-------------------LRGHQSLVKGVSWDP-IGKYFASQS 190 (942)
T ss_pred ccceeccCCCccEEEEecccceEEEEccccceeeee-------------------eecccccccceEECC-ccCeeeeec
Confidence 366889999999777778899999999877533222 224445678999999 666555544
Q ss_pred CCe-EEEEeCCCCeEEEcccccC--CCCccCcceeEEeCCCCeEEEEeC
Q 019290 116 YFG-LMVVGPNGGQAQQLASSAG--GIPFRFTNDLDIDPNTGIVYFTDS 161 (343)
Q Consensus 116 ~~g-i~~~d~~~~~~~~~~~~~~--~~~~~~~~~i~~d~~dg~l~v~~~ 161 (343)
.++ |..+...+-.+......+. .....+...+...| ||...++..
T Consensus 191 dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~n 238 (942)
T KOG0973|consen 191 DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLASPN 238 (942)
T ss_pred CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCeecchh
Confidence 455 5555433222222222211 12234556677788 587766543
No 237
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=94.21 E-value=2.9 Score=35.07 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=47.0
Q ss_pred cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEc
Q 019290 142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAES 220 (343)
Q Consensus 142 ~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~ 220 (343)
..+..+++||. |++.++... ...-..||..++.+. ++.........+.|+|... ...+.+
T Consensus 232 savaav~vdps-grll~sg~~-----------------dssc~lydirg~r~iq~f~phsadir~vrfsp~a~-yllt~s 292 (350)
T KOG0641|consen 232 SAVAAVAVDPS-GRLLASGHA-----------------DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH-YLLTCS 292 (350)
T ss_pred ceeEEEEECCC-cceeeeccC-----------------CCceEEEEeeCCceeeeeCCCccceeEEEeCCCce-EEEEec
Confidence 45677889994 998886432 223444566555543 3444445567778887544 444666
Q ss_pred CCCeEEEEEccCcc
Q 019290 221 ATLKILRFWLQGER 234 (343)
Q Consensus 221 ~~~~i~~~~~~~~~ 234 (343)
.+..|..-|+.|+.
T Consensus 293 yd~~ikltdlqgdl 306 (350)
T KOG0641|consen 293 YDMKIKLTDLQGDL 306 (350)
T ss_pred ccceEEEeecccch
Confidence 78889888888753
No 238
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.13 E-value=0.76 Score=40.93 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=96.3
Q ss_pred ccccccCC--CCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290 25 SYQQLQLP--GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK 102 (343)
Q Consensus 25 ~~~~~~~~--~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~ 102 (343)
.++++..+ ...+..++.+| |+. ++.+..+..|-.||.++.....+. ....+.+..+.
T Consensus 186 ~~~rinc~Se~skgVYClQYD-D~k-iVSGlrDnTikiWD~n~~~c~~~L-------------------~GHtGSVLCLq 244 (499)
T KOG0281|consen 186 LLQRINCRSENSKGVYCLQYD-DEK-IVSGLRDNTIKIWDKNSLECLKIL-------------------TGHTGSVLCLQ 244 (499)
T ss_pred eeeeecCCcccCCceEEEEec-chh-hhcccccCceEEeccccHHHHHhh-------------------hcCCCcEEeee
Confidence 44556655 22245566665 334 678888888999988764433221 12222333444
Q ss_pred EeCCCCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCc
Q 019290 103 FNPVTCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSG 181 (343)
Q Consensus 103 ~~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~ 181 (343)
++ +++.|+... ..+..+|.++|+.-....-.. ..+-++.+.. |. .++-+.. .+.
T Consensus 245 yd---~rviisGSSDsTvrvWDv~tge~l~tlihHc----eaVLhlrf~n--g~-mvtcSkD---------------rsi 299 (499)
T KOG0281|consen 245 YD---ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHC----EAVLHLRFSN--GY-MVTCSKD---------------RSI 299 (499)
T ss_pred cc---ceEEEecCCCceEEEEeccCCchhhHHhhhc----ceeEEEEEeC--CE-EEEecCC---------------cee
Confidence 44 456665443 348899999886432211111 1233334332 33 3332220 123
Q ss_pred eEEEEeCCCCc--eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCC-CC
Q 019290 182 RLLKYDPLKKN--VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDS-KG 258 (343)
Q Consensus 182 ~v~~~d~~~~~--~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G 258 (343)
.||..+..+.. .+.+.......|.+.++ .+ ++|+.+.+.+|.+|+..+ .++ +-.+.++-.|++.-. .|
T Consensus 300 aVWdm~sps~it~rrVLvGHrAaVNvVdfd--~k-yIVsASgDRTikvW~~st----~ef--vRtl~gHkRGIAClQYr~ 370 (499)
T KOG0281|consen 300 AVWDMASPTDITLRRVLVGHRAAVNVVDFD--DK-YIVSASGDRTIKVWSTST----CEF--VRTLNGHKRGIACLQYRD 370 (499)
T ss_pred EEEeccCchHHHHHHHHhhhhhheeeeccc--cc-eEEEecCCceEEEEeccc----eee--ehhhhcccccceehhccC
Confidence 35554432211 11233344456666665 33 677778889999999765 221 112556677877644 45
Q ss_pred CEEEEecc
Q 019290 259 EFWIAMNS 266 (343)
Q Consensus 259 ~lwi~~~~ 266 (343)
++.++...
T Consensus 371 rlvVSGSS 378 (499)
T KOG0281|consen 371 RLVVSGSS 378 (499)
T ss_pred eEEEecCC
Confidence 66665443
No 239
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.09 E-value=0.24 Score=29.40 Aligned_cols=42 Identities=7% Similarity=0.071 Sum_probs=27.8
Q ss_pred cCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeC
Q 019290 210 NNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSD 255 (343)
Q Consensus 210 ~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d 255 (343)
++++.||+++...+.|..+|...... ... ......|.+++++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~---~~~-i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKV---IAT-IPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeE---EEE-EECCCCCceEEeC
Confidence 47888999999999999999754211 111 1233457777754
No 240
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=94.08 E-value=0.056 Score=28.19 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=13.1
Q ss_pred CCceeeCCCCCEEEEec
Q 019290 249 PDNIKSDSKGEFWIAMN 265 (343)
Q Consensus 249 p~~i~~d~~G~lwi~~~ 265 (343)
...++.|++|+||+++.
T Consensus 7 I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 7 IYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEEEE-TTSCEEEEET
T ss_pred EEEEEEcCCcCEEEEeC
Confidence 34578899999999985
No 241
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=94.08 E-value=2.8 Score=37.87 Aligned_cols=102 Identities=15% Similarity=0.195 Sum_probs=62.8
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
...+.+++.+. +|....++.|..||..++... .+. ....-+.+.+.+ ...|.++..
T Consensus 263 Vs~V~w~d~~v-~yS~SwDHTIk~WDletg~~~~~~~---------------------~~ksl~~i~~~~-~~~Ll~~gs 319 (423)
T KOG0313|consen 263 VSSVVWSDATV-IYSVSWDHTIKVWDLETGGLKSTLT---------------------TNKSLNCISYSP-LSKLLASGS 319 (423)
T ss_pred eeeEEEcCCCc-eEeecccceEEEEEeecccceeeee---------------------cCcceeEeeccc-ccceeeecC
Confidence 55677777555 899999999999999875422 111 111124667777 555555533
Q ss_pred -CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCC
Q 019290 116 -YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS 162 (343)
Q Consensus 116 -~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~ 162 (343)
...+..+||+++.-....+...+.. +++..+...|.+-.++++.+.
T Consensus 320 sdr~irl~DPR~~~gs~v~~s~~gH~-nwVssvkwsp~~~~~~~S~S~ 366 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDGSVVSQSLIGHK-NWVSSVKWSPTNEFQLVSGSY 366 (423)
T ss_pred CCCceeecCCCCCCCceeEEeeecch-hhhhheecCCCCceEEEEEec
Confidence 3458999998765333322222322 578888888864456665544
No 242
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=7.7 Score=39.26 Aligned_cols=202 Identities=10% Similarity=0.013 Sum_probs=100.6
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
..+++++-+++-+++++..+-.|-.|+..+.+.. | +.......+..+.|+.+--.+.-+..
T Consensus 53 pVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl-f------------------tL~GHlDYVRt~~FHheyPWIlSASD 113 (1202)
T KOG0292|consen 53 PVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL-F------------------TLLGHLDYVRTVFFHHEYPWILSASD 113 (1202)
T ss_pred ccceeeecCCCCeEEecCCccEEEEEecccceeh-h------------------hhccccceeEEeeccCCCceEEEccC
Confidence 5789999999996667777778888887664322 1 11123345667778875555555543
Q ss_pred CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCc----ccccccc-eeeeeec----CCCceE---
Q 019290 116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSI----YFQRRQY-FMSIATG----DRSGRL--- 183 (343)
Q Consensus 116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~----~~~~~~~-~~~~~~~----~~~~~v--- 183 (343)
..-|+.+|.++++-....... ...+....+.|. ..+.++.+-. .|.+..- .+....+ ...+.-
T Consensus 114 DQTIrIWNwqsr~~iavltGH----nHYVMcAqFhpt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~ 188 (1202)
T KOG0292|consen 114 DQTIRIWNWQSRKCIAVLTGH----NHYVMCAQFHPT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNS 188 (1202)
T ss_pred CCeEEEEeccCCceEEEEecC----ceEEEeeccCCc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccch
Confidence 455888888876643332221 133445556663 5555554321 1111000 0000000 000000
Q ss_pred EEEeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee--c-CCCCCCceeeCCCCC
Q 019290 184 LKYDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA--E-MPRFPDNIKSDSKGE 259 (343)
Q Consensus 184 ~~~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~-~~~~p~~i~~d~~G~ 259 (343)
-.+....-.++ .+...-++.|-.+|+|.-. |+++...+..|-.|..... ...++-. . .++ .+++.+++.-+
T Consensus 189 dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnet---KaWEvDtcrgH~nn-Vssvlfhp~q~ 263 (1202)
T KOG0292|consen 189 DLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET---KAWEVDTCRGHYNN-VSSVLFHPHQD 263 (1202)
T ss_pred hhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccc---cceeehhhhcccCC-cceEEecCccc
Confidence 00000001111 1223345678889987654 7888776666655555321 1111110 0 111 34566777777
Q ss_pred EEEEecc
Q 019290 260 FWIAMNS 266 (343)
Q Consensus 260 lwi~~~~ 266 (343)
+.++...
T Consensus 264 lIlSnsE 270 (1202)
T KOG0292|consen 264 LILSNSE 270 (1202)
T ss_pred eeEecCC
Confidence 7777655
No 243
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=1.4 Score=39.76 Aligned_cols=101 Identities=9% Similarity=-0.045 Sum_probs=63.5
Q ss_pred CceEEEcCC--CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 37 PESLAFDCN--GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 37 p~~l~~d~~--g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
+.++.|-+. ...+.+.+..+.+..||+..+....... . -.-.....+.+.+..+.||+++
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f-d-----------------~~E~~is~~~l~p~gn~Iy~gn 266 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF-D-----------------FLENPISSTGLTPSGNFIYTGN 266 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcccCcceeEe-c-----------------cccCcceeeeecCCCcEEEEec
Confidence 445556554 5656677888999999998654322110 0 0111234677788677899997
Q ss_pred CCCeEEEEeCCCCeEEEc-ccccCCCCccCcceeEEeCCCCeEEEEe
Q 019290 115 AYFGLMVVGPNGGQAQQL-ASSAGGIPFRFTNDLDIDPNTGIVYFTD 160 (343)
Q Consensus 115 ~~~gi~~~d~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~dg~l~v~~ 160 (343)
+...+..+|.++++.... ..... ..+.+|..++. +.+..+.
T Consensus 267 ~~g~l~~FD~r~~kl~g~~~kg~t----Gsirsih~hp~-~~~las~ 308 (412)
T KOG3881|consen 267 TKGQLAKFDLRGGKLLGCGLKGIT----GSIRSIHCHPT-HPVLASC 308 (412)
T ss_pred ccchhheecccCceeeccccCCcc----CCcceEEEcCC-CceEEee
Confidence 655699999998775433 11111 35789999994 6666633
No 244
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=93.85 E-value=0.17 Score=30.42 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=29.3
Q ss_pred EEEEEEcCCC-eEEEEEccCccccccceeeec-CCCCCCceeeCC
Q 019290 214 FLLLAESATL-KILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDS 256 (343)
Q Consensus 214 ~lyv~~~~~~-~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~ 256 (343)
.+||++...+ .|.+.+++| ...+++.. .-..|.++++|.
T Consensus 2 ~iYWtD~~~~~~I~~a~~dG----s~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDG----SNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTS----TSEEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCC----CCeEEEEECCCCCcCEEEECC
Confidence 6899999999 999999988 34344443 334699999874
No 245
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.79 E-value=1.1 Score=45.84 Aligned_cols=157 Identities=22% Similarity=0.243 Sum_probs=81.4
Q ss_pred ceEEEcCCCCe----eEEEecCCEEEEEEcCCC----CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe
Q 019290 38 ESLAFDCNGEG----PYVGVSDGRILKWKAANS----GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD 109 (343)
Q Consensus 38 ~~l~~d~~g~~----l~~~~~~g~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~ 109 (343)
..|++.+.|.. +-.+..+|.|..||+..- +...+ .......+.+.|+.|.+.+++
T Consensus 68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~l-----------------a~~~~h~G~V~gLDfN~~q~n 130 (1049)
T KOG0307|consen 68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVL-----------------ATKSKHTGPVLGLDFNPFQGN 130 (1049)
T ss_pred eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHH-----------------hhhcccCCceeeeeccccCCc
Confidence 35666655554 445678899999998641 11011 111122345678999985555
Q ss_pred EEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290 110 LYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP 188 (343)
Q Consensus 110 l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 188 (343)
+.-+...+| |+.+|...- -+++... ...+...+..++.......++.+... .++...+|.
T Consensus 131 lLASGa~~geI~iWDlnn~-~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~-----------------sg~~~iWDl 191 (1049)
T KOG0307|consen 131 LLASGADDGEILIWDLNKP-ETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSP-----------------SGRAVIWDL 191 (1049)
T ss_pred eeeccCCCCcEEEeccCCc-CCCCCCC-CCCCcccceEeccchhhhHHhhccCC-----------------CCCceeccc
Confidence 665544455 999998741 1222111 11111234444444322334443332 567888887
Q ss_pred CCCceEEeecCC---CCcceeEEecCCCEEEEEEcCC---CeEEEEEc
Q 019290 189 LKKNVTVMYNGL---SFPNGVALSNNNSFLLLAESAT---LKILRFWL 230 (343)
Q Consensus 189 ~~~~~~~~~~~~---~~~~~i~~~~d~~~lyv~~~~~---~~i~~~~~ 230 (343)
..++...-.... ..-.+++++|+..+-.++.+.+ -.|-.||+
T Consensus 192 r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDl 239 (1049)
T KOG0307|consen 192 RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDL 239 (1049)
T ss_pred cCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecc
Confidence 644322212222 2256899999876644443333 34445554
No 246
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.75 E-value=7.2 Score=39.57 Aligned_cols=143 Identities=13% Similarity=0.084 Sum_probs=75.5
Q ss_pred CeeeEEEeCCCCeEEEEeC--CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCC-----CCeEEEEeCCccccccc
Q 019290 97 RPLGIKFNPVTCDLYIADA--YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPN-----TGIVYFTDSSIYFQRRQ 169 (343)
Q Consensus 97 ~p~gi~~~~~~~~l~v~~~--~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-----dg~l~v~~~~~~~~~~~ 169 (343)
.|.-+.++.++..+.+-+. .+.|+++|++.|++..-....... .+.+++.+.+ ....+++-+
T Consensus 482 ~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~---~v~~~~p~~K~aqlt~e~tflGls-------- 550 (794)
T PF08553_consen 482 TPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI---PVVDIAPDSKFAQLTNEQTFLGLS-------- 550 (794)
T ss_pred CcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCc---ceeEecccccccccCCCceEEEEC--------
Confidence 3555555655666666543 356999999999876543332221 1444444321 123444333
Q ss_pred ceeeeeecCCCceEEEEeCCCCceEEee----cCCCC--cceeEEecCCCEEEEEEcCCCeEEEEEccCcccccccee-e
Q 019290 170 YFMSIATGDRSGRLLKYDPLKKNVTVMY----NGLSF--PNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQL-F 242 (343)
Q Consensus 170 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~----~~~~~--~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~-~ 242 (343)
..+|+++||.-..-..+. +.... ...++-+.+|. ++..+..|.|..|+-.+ .+.+. +
T Consensus 551 ----------~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~--iavgs~~G~IRLyd~~g----~~AKT~l 614 (794)
T PF08553_consen 551 ----------DNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGY--IAVGSNKGDIRLYDRLG----KRAKTAL 614 (794)
T ss_pred ----------CCceEEeccCCCCCceeeccccccccCCCceEEEecCCce--EEEEeCCCcEEeecccc----hhhhhcC
Confidence 457999998632211111 11122 23444444543 34455688999998544 12222 2
Q ss_pred ecCCCCCCceeeCCCCCEEEEecc
Q 019290 243 AEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 243 ~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
..+..-.-++.+..||+..+|+-.
T Consensus 615 p~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 615 PGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred CCCCCCeeEEEecCCCcEEEEeec
Confidence 112222345778889987777654
No 247
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.75 E-value=1.1 Score=41.55 Aligned_cols=187 Identities=16% Similarity=0.175 Sum_probs=106.2
Q ss_pred cccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290 28 QLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV 106 (343)
Q Consensus 28 ~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~ 106 (343)
.+.+|. .+|..+-+..+|+++.++...|-|-.+|-.++.+. ++.. .-...++.+--
T Consensus 124 ~L~l~e-FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v---------------------~Etv~Dv~~LH- 180 (545)
T KOG1272|consen 124 DLSLPE-FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV---------------------METVRDVTFLH- 180 (545)
T ss_pred cccccc-cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh---------------------hhhhhhhhhhc-
Confidence 345554 37999999999999999888888888887775432 2210 00123333332
Q ss_pred CCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290 107 TCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK 185 (343)
Q Consensus 107 ~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 185 (343)
... |+|..+. =+|.||-.+.+.+.+-.. ..++.+-+-|. -.|.++.+. .|-+-.
T Consensus 181 neq-~~AVAQK~y~yvYD~~GtElHClk~~------~~v~rLeFLPy-HfLL~~~~~-----------------~G~L~Y 235 (545)
T KOG1272|consen 181 NEQ-FFAVAQKKYVYVYDNNGTELHCLKRH------IRVARLEFLPY-HFLLVAASE-----------------AGFLKY 235 (545)
T ss_pred chH-HHHhhhhceEEEecCCCcEEeehhhc------Cchhhhcccch-hheeeeccc-----------------CCceEE
Confidence 122 3332333 388888876666665322 22444555563 445554332 455666
Q ss_pred EeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEe
Q 019290 186 YDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM 264 (343)
Q Consensus 186 ~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~ 264 (343)
.|..+|++. .+..+......++..|-...+ ...-.+|.|..|.+..... -.++++. .+-..++++|++|++.+++
T Consensus 236 ~DVS~GklVa~~~t~~G~~~vm~qNP~NaVi-h~GhsnGtVSlWSP~skeP--LvKiLcH-~g~V~siAv~~~G~YMaTt 311 (545)
T KOG1272|consen 236 QDVSTGKLVASIRTGAGRTDVMKQNPYNAVI-HLGHSNGTVSLWSPNSKEP--LVKILCH-RGPVSSIAVDRGGRYMATT 311 (545)
T ss_pred EeechhhhhHHHHccCCccchhhcCCccceE-EEcCCCceEEecCCCCcch--HHHHHhc-CCCcceEEECCCCcEEeec
Confidence 677777643 222333344455555554433 3444578888888654221 1122222 2336789999999888887
Q ss_pred cc
Q 019290 265 NS 266 (343)
Q Consensus 265 ~~ 266 (343)
.-
T Consensus 312 G~ 313 (545)
T KOG1272|consen 312 GL 313 (545)
T ss_pred cc
Confidence 65
No 248
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.74 E-value=5.4 Score=36.52 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=58.1
Q ss_pred CeEEEEeCCC---eEEEEeCCCCeEEEcccccCCCCccCcc-eeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceE
Q 019290 108 CDLYIADAYF---GLMVVGPNGGQAQQLASSAGGIPFRFTN-DLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRL 183 (343)
Q Consensus 108 ~~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~-~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v 183 (343)
.-||+.. .+ .|+.++.+++..+.+.... -.+. -+.+|...+.+|++.... ....-.|
T Consensus 249 ~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G~-----~~V~~i~~~d~~~~~iyf~a~~~-------------~p~~r~l 309 (353)
T PF00930_consen 249 EFLWISE-RDGYRHLYLYDLDGGKPRQLTSGD-----WEVTSILGWDEDNNRIYFTANGD-------------NPGERHL 309 (353)
T ss_dssp EEEEEEE-TTSSEEEEEEETTSSEEEESS-SS-----S-EEEEEEEECTSSEEEEEESSG-------------GTTSBEE
T ss_pred EEEEEEE-cCCCcEEEEEcccccceeccccCc-----eeecccceEcCCCCEEEEEecCC-------------CCCceEE
Confidence 3466664 43 4999999988876553221 1233 356777557888866541 1113469
Q ss_pred EEEeCC-CCceEEeecCCCCcceeEEecCCCEEEEEE
Q 019290 184 LKYDPL-KKNVTVMYNGLSFPNGVALSNNNSFLLLAE 219 (343)
Q Consensus 184 ~~~d~~-~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~ 219 (343)
|+++.+ ++..+++.........+.++++++.+..+-
T Consensus 310 Y~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 310 YRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 999998 888887765443334888999998655443
No 249
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.72 E-value=4.9 Score=35.93 Aligned_cols=181 Identities=16% Similarity=0.163 Sum_probs=83.4
Q ss_pred eEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe
Q 019290 39 SLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG 118 (343)
Q Consensus 39 ~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g 118 (343)
+|.++. ...|+.-..+.|++-...+..|..+..+. ...+.+.++.... ++.++++.....
T Consensus 66 ~I~f~~--~~g~ivG~~g~ll~T~DgG~tW~~v~l~~-----------------~lpgs~~~i~~l~-~~~~~l~~~~G~ 125 (302)
T PF14870_consen 66 SISFDG--NEGWIVGEPGLLLHTTDGGKTWERVPLSS-----------------KLPGSPFGITALG-DGSAELAGDRGA 125 (302)
T ss_dssp EEEEET--TEEEEEEETTEEEEESSTTSS-EE----T-----------------T-SS-EEEEEEEE-TTEEEEEETT--
T ss_pred EEEecC--CceEEEcCCceEEEecCCCCCcEEeecCC-----------------CCCCCeeEEEEcC-CCcEEEEcCCCc
Confidence 454443 33565556777787776777888774321 1223456666554 567776644444
Q ss_pred EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE-EeCCCCceEEee
Q 019290 119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK-YDPLKKNVTVMY 197 (343)
Q Consensus 119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~-~d~~~~~~~~~~ 197 (343)
|++-.-.+..++.+..... ..++++...+ ||++.+... .|.++. .|+.....+...
T Consensus 126 iy~T~DgG~tW~~~~~~~~----gs~~~~~r~~-dG~~vavs~------------------~G~~~~s~~~G~~~w~~~~ 182 (302)
T PF14870_consen 126 IYRTTDGGKTWQAVVSETS----GSINDITRSS-DGRYVAVSS------------------RGNFYSSWDPGQTTWQPHN 182 (302)
T ss_dssp EEEESSTTSSEEEEE-S--------EEEEEE-T-TS-EEEEET------------------TSSEEEEE-TT-SS-EEEE
T ss_pred EEEeCCCCCCeeEcccCCc----ceeEeEEECC-CCcEEEEEC------------------cccEEEEecCCCccceEEc
Confidence 6666544445665432211 3466777777 577544322 345654 454322233332
Q ss_pred c-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccce-eeecC--CCC-CCceeeCCCCCEEEEecc
Q 019290 198 N-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQ-LFAEM--PRF-PDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 198 ~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~-~~~~~--~~~-p~~i~~d~~G~lwi~~~~ 266 (343)
. .......+.+.+++. |++.. .++.|..-+...+. .+.. .+.+. .+. .-.++.++++++|++...
T Consensus 183 r~~~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~~~~~~--~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 183 RNSSRRIQSMGFSPDGN-LWMLA-RGGQIQFSDDPDDG--ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp --SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE-TTEE--EEE---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred cCccceehhceecCCCC-EEEEe-CCcEEEEccCCCCc--cccccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 2 235678888998875 66654 45666554411111 1111 11111 111 112467888999999876
No 250
>smart00284 OLF Olfactomedin-like domains.
Probab=93.67 E-value=4.3 Score=35.16 Aligned_cols=171 Identities=14% Similarity=0.152 Sum_probs=88.2
Q ss_pred ccccCC-CCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEee--ecCCCccccccCCCCCcccCCCc-CCeeeEE
Q 019290 27 QQLQLP-GVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFA--TTAPHRAREICDGSTNTTLEPLC-GRPLGIK 102 (343)
Q Consensus 27 ~~~~~~-~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~p~gi~ 102 (343)
+.+.+| ...+...+++. |.++|--.....|.+||..++....-. +.+... ...+-. +....|.
T Consensus 66 ~~~~Lp~~~~GtG~VVYn--gslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~-----------~~~~Y~~~~~sdiD 132 (255)
T smart00284 66 TDHPLPHAGQGTGVVVYN--GSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYN-----------NRFPYAWGGFSDID 132 (255)
T ss_pred eEEECCCccccccEEEEC--ceEEEEecCCccEEEEECCCCcEEEEEecCccccc-----------cccccccCCCccEE
Confidence 444555 23344455554 664454445678999999887654221 111100 000111 1122344
Q ss_pred EeCCCCeEEEEe---CCCe---EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290 103 FNPVTCDLYIAD---AYFG---LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 103 ~~~~~~~l~v~~---~~~g---i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
+..+++.||+.= ...| |-++|+++=.++.........+ ..-+.+++. |.||++++..
T Consensus 133 lAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~-sa~naFmvC---GvLY~~~s~~------------- 195 (255)
T smart00284 133 LAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKR-SASNAFMIC---GILYVTRSLG------------- 195 (255)
T ss_pred EEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcc-cccccEEEe---eEEEEEccCC-------------
Confidence 443357788761 1224 4588988766655443322221 222444443 7999987531
Q ss_pred cCCCce-EEEEeCCCCceEEee----cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290 177 GDRSGR-LLKYDPLKKNVTVMY----NGLSFPNGVALSNNNSFLLLAESATLKILRFWL 230 (343)
Q Consensus 177 ~~~~~~-v~~~d~~~~~~~~~~----~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~ 230 (343)
....+ -+.||..+++...+. ........+...|..+.||+-+ ++-+..|++
T Consensus 196 -~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd--ng~~l~Y~v 251 (255)
T smart00284 196 -SKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN--NGHLVHYDI 251 (255)
T ss_pred -CCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe--CCeEEEEEE
Confidence 11334 467898766543221 1223345577788888888865 455666664
No 251
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=93.66 E-value=4.6 Score=35.48 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=86.5
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
.-.++-+++.++.|.++..+|.+..|+....++..-. .........+|.+ ...+|+++-
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--------------------~~~~plL~c~F~d-~~~~~~G~~ 73 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--------------------KHGAPLLDCAFAD-ESTIVTGGL 73 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--------------------ecCCceeeeeccC-CceEEEecc
Confidence 4568889988777888889999999987664332111 1112235677887 789999965
Q ss_pred CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290 116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV 195 (343)
Q Consensus 116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 195 (343)
...|.++|+.++....+. ... ..+..|...+..|.+.- .. ....|-.+|+.....
T Consensus 74 dg~vr~~Dln~~~~~~ig-th~----~~i~ci~~~~~~~~vIs-gs-----------------WD~~ik~wD~R~~~~-- 128 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNEDQIG-THD----EGIRCIEYSYEVGCVIS-GS-----------------WDKTIKFWDPRNKVV-- 128 (323)
T ss_pred CceEEEEEecCCcceeec-cCC----CceEEEEeeccCCeEEE-cc-----------------cCccEEEEecccccc--
Confidence 556999999988755442 211 12344444443234333 22 134577777753211
Q ss_pred eecCCCCc-ceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 196 MYNGLSFP-NGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 196 ~~~~~~~~-~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
......+ .--+++-.+..|.|. +.+.++..||+..
T Consensus 129 -~~~~d~~kkVy~~~v~g~~LvVg-~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 129 -VGTFDQGKKVYCMDVSGNRLVVG-TSDRKVLIYDLRN 164 (323)
T ss_pred -ccccccCceEEEEeccCCEEEEe-ecCceEEEEEccc
Confidence 1111111 222344456667764 3467888898753
No 252
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=3.4 Score=37.69 Aligned_cols=185 Identities=14% Similarity=0.114 Sum_probs=94.9
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEE-cCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290 38 ESLAFDCNGEGPYVGVSDGRILKWK-AANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY 116 (343)
Q Consensus 38 ~~l~~d~~g~~l~~~~~~g~i~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~ 116 (343)
..+++..+|..+=++..+|.+..++ |+-...... ...-+.+..+.|.+ ++.+.+.-..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e--------------------~~~~~eV~DL~FS~-dgk~lasig~ 206 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE--------------------IAHHAEVKDLDFSP-DGKFLASIGA 206 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh--------------------HhhcCccccceeCC-CCcEEEEecC
Confidence 6788888888666666777777777 543211111 01223467889998 6755554444
Q ss_pred CeEEEEeCCCCe-EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC--CC--
Q 019290 117 FGLMVVGPNGGQ-AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL--KK-- 191 (343)
Q Consensus 117 ~gi~~~d~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~--~~-- 191 (343)
....+++.++|. +.+..+......+..++-...... ..+++++... +.++|..++.. .+
T Consensus 207 d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~-~~l~laa~~~---------------~~~~v~~~~~~~w~~~~ 270 (398)
T KOG0771|consen 207 DSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQ-ETLRLAASQF---------------PGGGVRLCDISLWSGSN 270 (398)
T ss_pred CceEEEEeccCchhhhcCCcccchhhhhceecccCCC-ceEEEEEecC---------------CCCceeEEEeeeecccc
Confidence 577788887772 111111111112233333332221 3666655431 12223222221 11
Q ss_pred --ceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCCCCEEEE
Q 019290 192 --NVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSKGEFWIA 263 (343)
Q Consensus 192 --~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwi~ 263 (343)
+.+...........++++.||+.+-+. +.++.|..++...= .....+.+ -.++..++.+.||-+....
T Consensus 271 ~l~~~~~~~~~~siSsl~VS~dGkf~AlG-T~dGsVai~~~~~l---q~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 271 FLRLRKKIKRFKSISSLAVSDDGKFLALG-TMDGSVAIYDAKSL---QRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred ccchhhhhhccCcceeEEEcCCCcEEEEe-ccCCcEEEEEecee---eeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 222223344567889999999866554 55889999885431 12222222 1234556667666544443
No 253
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.59 E-value=7.3 Score=37.52 Aligned_cols=82 Identities=9% Similarity=0.138 Sum_probs=48.1
Q ss_pred CceEEEEeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCC
Q 019290 180 SGRLLKYDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKG 258 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G 258 (343)
..+|+.++...+... .+......+....|+|...+++|+. ...|..|++..... .+.+.......+.|.+++.|
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqel---vKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQEL---VKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHHHH---HHHHhcCCeeeeeeeecCCC
Confidence 445777766433221 1112223467888999888888875 46788898765221 11111122246678888877
Q ss_pred -CEEEEecc
Q 019290 259 -EFWIAMNS 266 (343)
Q Consensus 259 -~lwi~~~~ 266 (343)
+|.+++..
T Consensus 620 Dnli~gs~d 628 (733)
T KOG0650|consen 620 DNLILGSYD 628 (733)
T ss_pred CeEEEecCC
Confidence 67777665
No 254
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=93.49 E-value=5.3 Score=35.68 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=26.9
Q ss_pred cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEe
Q 019290 142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVM 196 (343)
Q Consensus 142 ~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 196 (343)
.++|++..++ +|.+.++-.. ...|+++|+.+|++.-.
T Consensus 144 ~HiNsV~~~~-~G~yLiS~R~-----------------~~~i~~I~~~tG~I~W~ 180 (299)
T PF14269_consen 144 FHINSVDKDD-DGDYLISSRN-----------------TSTIYKIDPSTGKIIWR 180 (299)
T ss_pred cEeeeeeecC-CccEEEEecc-----------------cCEEEEEECCCCcEEEE
Confidence 4578888888 5888887655 45688888887776543
No 255
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=93.48 E-value=2.2 Score=38.91 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=94.4
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCC-CeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANS-GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
...+++++++...+.+.+.+|.|..+|..-. +-..+ ......+..+..++.++.|..+.
T Consensus 182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL--------------------~GHgwdVksvdWHP~kgLiasgs 241 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL--------------------RGHGWDVKSVDWHPTKGLIASGS 241 (464)
T ss_pred hhheeccCCCCceeEEecCCCeEEEEeccCCchhhee--------------------ccCCCCcceeccCCccceeEEcc
Confidence 4679999998776777889999999986432 11111 12233467788888666666653
Q ss_pred CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCC-CCce
Q 019290 115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL-KKNV 193 (343)
Q Consensus 115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~~~~ 193 (343)
..+=|-.+|+++|. .+.....- -+.+..+.+.++ ++...+.+. ...+-.||.. -+++
T Consensus 242 kDnlVKlWDprSg~--cl~tlh~H--KntVl~~~f~~n-~N~Llt~sk-----------------D~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 242 KDNLVKLWDPRSGS--CLATLHGH--KNTVLAVKFNPN-GNWLLTGSK-----------------DQSCKVFDIRTMKEL 299 (464)
T ss_pred CCceeEeecCCCcc--hhhhhhhc--cceEEEEEEcCC-CCeeEEccC-----------------CceEEEEehhHhHHH
Confidence 33436678998875 23222111 145677888884 754443332 2345556654 2233
Q ss_pred EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 194 TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 194 ~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.++...-.....++++|-...|+.+.-.+++|+.+.+..
T Consensus 300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~ 338 (464)
T KOG0284|consen 300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL 338 (464)
T ss_pred HHhhcchhhheeeccccccccceeeccCCCceEEEeccc
Confidence 333333345667777776667888877789999988763
No 256
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.41 E-value=4.8 Score=34.91 Aligned_cols=156 Identities=14% Similarity=0.098 Sum_probs=82.3
Q ss_pred CCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCe-eeEEEeCCCCeEEEEe---CCCe-
Q 019290 45 NGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRP-LGIKFNPVTCDLYIAD---AYFG- 118 (343)
Q Consensus 45 ~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~~~~~~~l~v~~---~~~g- 118 (343)
+|.++|--.....|.+||..++... ....+.... ....+-...+ ..+.+..+++.||+.= ...|
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~----------~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ 147 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGY----------NNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN 147 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCcEEEEEECCcccc----------ccccceecCCCceEEEEEcCCCEEEEEecCCCCCc
Confidence 4554454456788999999987665 322111000 0001111112 2344433357788761 1233
Q ss_pred --EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCce-EEEEeCCCCceEE
Q 019290 119 --LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGR-LLKYDPLKKNVTV 195 (343)
Q Consensus 119 --i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~d~~~~~~~~ 195 (343)
|-++|+++-.++.........+ ..-+.+++ . |-||+++... ..... -+.||..+++.+.
T Consensus 148 ivvskld~~tL~v~~tw~T~~~k~-~~~naFmv--C-GvLY~~~s~~--------------~~~~~I~yafDt~t~~~~~ 209 (250)
T PF02191_consen 148 IVVSKLDPETLSVEQTWNTSYPKR-SAGNAFMV--C-GVLYATDSYD--------------TRDTEIFYAFDTYTGKEED 209 (250)
T ss_pred EEEEeeCcccCceEEEEEeccCch-hhcceeeE--e-eEEEEEEECC--------------CCCcEEEEEEECCCCceec
Confidence 5688888766655433322111 22233333 3 7899987652 11233 4678887665543
Q ss_pred ee----cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290 196 MY----NGLSFPNGVALSNNNSFLLLAESATLKILRFWL 230 (343)
Q Consensus 196 ~~----~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~ 230 (343)
+. .......-+...|..+.||+-+. +.+..|++
T Consensus 210 ~~i~f~~~~~~~~~l~YNP~dk~LY~wd~--G~~v~Y~v 246 (250)
T PF02191_consen 210 VSIPFPNPYGNISMLSYNPRDKKLYAWDN--GYQVTYDV 246 (250)
T ss_pred eeeeeccccCceEeeeECCCCCeEEEEEC--CeEEEEEE
Confidence 22 22334566778888888888763 55666664
No 257
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.36 E-value=3.1 Score=41.09 Aligned_cols=131 Identities=11% Similarity=0.098 Sum_probs=80.5
Q ss_pred eEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCE-
Q 019290 182 RLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEF- 260 (343)
Q Consensus 182 ~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l- 260 (343)
.|-.|++...+.-.....-.....++|.|.....+++.+-++.+..|.+.. .+...+.++..+...++..|||+.
T Consensus 391 TVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d----~~Vv~W~Dl~~lITAvcy~PdGk~a 466 (712)
T KOG0283|consen 391 TVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD----KKVVDWNDLRDLITAVCYSPDGKGA 466 (712)
T ss_pred cEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCc----CeeEeehhhhhhheeEEeccCCceE
Confidence 344445544444444455567789999998777888999999999999865 333344445556778889999965
Q ss_pred EEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCE-EEEe--eCC-CCC-ccCCceeEEEe---CCEEEEec
Q 019290 261 WIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNV-VDVL--DGN-EGN-TLNSVSEVQEY---GEYLYTGS 332 (343)
Q Consensus 261 wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~-~~~~--~~~-~~~-~~~~~~~~~~~---~g~l~i~~ 332 (343)
.|++.. |....|+..+.. .... ... ..+ ....+++.+.. ..+|.|++
T Consensus 467 vIGt~~-------------------------G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS 521 (712)
T KOG0283|consen 467 VIGTFN-------------------------GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS 521 (712)
T ss_pred EEEEec-------------------------cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec
Confidence 556655 345556665433 2222 211 111 22246666543 34677777
Q ss_pred CCCCeEEEEc
Q 019290 333 SVQPYVVVIK 342 (343)
Q Consensus 333 ~~~~~i~~~~ 342 (343)
.++ +|..|+
T Consensus 522 nDS-rIRI~d 530 (712)
T KOG0283|consen 522 NDS-RIRIYD 530 (712)
T ss_pred CCC-ceEEEe
Confidence 766 566554
No 258
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=93.24 E-value=7.1 Score=36.39 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=55.2
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC
Q 019290 38 ESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF 117 (343)
Q Consensus 38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~ 117 (343)
-+|-+..+|+.+.++.-++.+..||..++.+...... + ...++.++..++.=+++....
T Consensus 280 ~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~--------~-------------s~~~lDVdW~~~~~F~ts~td 338 (524)
T KOG0273|consen 280 FSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF--------H-------------SAPALDVDWQSNDEFATSSTD 338 (524)
T ss_pred EEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee--------c-------------cCCccceEEecCceEeecCCC
Confidence 4777888899777777888899999877665543210 0 011233333233333332333
Q ss_pred e-EEEEeCCC-CeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCC
Q 019290 118 G-LMVVGPNG-GQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS 162 (343)
Q Consensus 118 g-i~~~d~~~-~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~ 162 (343)
+ |+++-... +.++.+.. ..+.++.+..++. |.|..+.+.
T Consensus 339 ~~i~V~kv~~~~P~~t~~G-----H~g~V~alk~n~t-g~LLaS~Sd 379 (524)
T KOG0273|consen 339 GCIHVCKVGEDRPVKTFIG-----HHGEVNALKWNPT-GSLLASCSD 379 (524)
T ss_pred ceEEEEEecCCCcceeeec-----ccCceEEEEECCC-CceEEEecC
Confidence 3 44443322 22332321 2256889999995 898887664
No 259
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=93.16 E-value=6.6 Score=35.76 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=90.1
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCe-EEEEe
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCD-LYIAD 114 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~-l~v~~ 114 (343)
....|.+..+|+.|..+..+.++..|+.+..-....+. ++...-.+....+..+.|+. +++ ||-+
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~K------------PI~~~~~~H~SNIF~L~F~~-~N~~~~SG- 123 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPK------------PIGVMEHPHRSNIFSLEFDL-ENRFLYSG- 123 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCC------------CceeccCccccceEEEEEcc-CCeeEecC-
Confidence 46678888888866666666566666543311111100 00000112223467888998 554 5544
Q ss_pred CCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC--
Q 019290 115 AYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK-- 191 (343)
Q Consensus 115 ~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-- 191 (343)
...| |.+-|.++.+...++..... -..++++.+.|. ++++++... .+.|..+|....
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~~~~~~--~~~VY~m~~~P~-DN~~~~~t~-----------------~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVANENNN--RGDVYHMDQHPT-DNTLIVVTR-----------------AKLVSFIDNRDRQN 183 (609)
T ss_pred CCcceeEeeecccceeeeeecccCc--ccceeecccCCC-CceEEEEec-----------------CceEEEEeccCCCC
Confidence 3344 88888887665444322111 124678888886 444443322 456777765322
Q ss_pred --ceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 192 --NVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 192 --~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
....+...........|.|..-.|..+....+++-+|+..-
T Consensus 184 ~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 184 PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM 226 (609)
T ss_pred CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecc
Confidence 22233333344455667887777888777778888888654
No 260
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=93.07 E-value=0.66 Score=27.86 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=29.7
Q ss_pred CeEEEEeCCcccccccceeeeeecCCCc-eEEEEeCCCCceEE-eecCCCCcceeEEec
Q 019290 154 GIVYFTDSSIYFQRRQYFMSIATGDRSG-RLLKYDPLKKNVTV-MYNGLSFPNGVALSN 210 (343)
Q Consensus 154 g~l~v~~~~~~~~~~~~~~~~~~~~~~~-~v~~~d~~~~~~~~-~~~~~~~~~~i~~~~ 210 (343)
++||++|.. .. .|.+.+.++...+. +..++..|++|++++
T Consensus 1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 578999876 34 78888887666444 456788999999874
No 261
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.07 E-value=9.5 Score=37.34 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=32.6
Q ss_pred ccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCC
Q 019290 25 SYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSG 67 (343)
Q Consensus 25 ~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~ 67 (343)
+.+.+..++....+++++.|||..+..+ .+.+++.||++.+.
T Consensus 3 ~~~~~r~~~~hci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~ 44 (1081)
T KOG1538|consen 3 AVLTWRDKAEHCINDIAFKPDGTQLILA-AGSRLLVYDTSDGT 44 (1081)
T ss_pred hhhhhhcccccchheeEECCCCceEEEe-cCCEEEEEeCCCcc
Confidence 3455666776788999999999977765 56789999997654
No 262
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=92.80 E-value=12 Score=39.04 Aligned_cols=190 Identities=16% Similarity=0.244 Sum_probs=109.0
Q ss_pred eeeEEEeCCCCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290 98 PLGIKFNPVTCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
+..+.++...+.+|.++... .+............+. ....-.+.++++|..++.+|++|..
T Consensus 439 ~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~----~~g~~~~~~lavD~~~~~~y~tDe~-------------- 500 (877)
T KOG1215|consen 439 AVALDFDVLNNRIYWADLSDEKICRASQDGSSECELC----GDGLCIPEGLAVDWIGDNIYWTDEG-------------- 500 (877)
T ss_pred ceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEe----ccCccccCcEEEEeccCCceecccC--------------
Confidence 34555555456788887543 3666555433333211 1112457789999877899998876
Q ss_pred cCCCceEEEEeCCCCceEE-eecCCCCcceeEEecCCCEEEEEEcCC-CeEEEEEccCccccccceeeecC-CCCCCcee
Q 019290 177 GDRSGRLLKYDPLKKNVTV-MYNGLSFPNGVALSNNNSFLLLAESAT-LKILRFWLQGERTTYTPQLFAEM-PRFPDNIK 253 (343)
Q Consensus 177 ~~~~~~v~~~d~~~~~~~~-~~~~~~~~~~i~~~~d~~~lyv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~-~~~p~~i~ 253 (343)
...+.+.+.++..... +...+..+..+++++-...+||++... .+|.+-.+++. ....+... ...|++++
T Consensus 501 ---~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~----~~~~l~~~~~~~p~glt 573 (877)
T KOG1215|consen 501 ---NCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGS----ERAVLVTNGILWPNGLT 573 (877)
T ss_pred ---CceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCC----CceEEEeCCccCCCcce
Confidence 2334444433222223 334456789999999989999998752 35666666653 22333322 35699999
Q ss_pred eCC-CCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEEEec
Q 019290 254 SDS-KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGS 332 (343)
Q Consensus 254 ~d~-~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~ 332 (343)
+|- +..+|-++.... ..+.+.+-+|+...... .. ....+..+....+++|-..
T Consensus 574 ~d~~~~~~yw~d~~~~-----------------------~~i~~~~~~g~~r~~~~-~~--~~~~p~~~~~~~~~iyw~d 627 (877)
T KOG1215|consen 574 IDYETDRLYWADAKLD-----------------------YTIESANMDGQNRRVVD-SE--DLPHPFGLSVFEDYIYWTD 627 (877)
T ss_pred EEeecceeEEEcccCC-----------------------cceeeeecCCCceEEec-cc--cCCCceEEEEecceeEEee
Confidence 986 456766665411 14556666665544221 11 1233444444567777666
Q ss_pred CCCCeE
Q 019290 333 SVQPYV 338 (343)
Q Consensus 333 ~~~~~i 338 (343)
.....+
T Consensus 628 ~~~~~~ 633 (877)
T KOG1215|consen 628 WSNRAI 633 (877)
T ss_pred ccccce
Confidence 665543
No 263
>PLN02153 epithiospecifier protein
Probab=92.76 E-value=7.5 Score=35.35 Aligned_cols=117 Identities=12% Similarity=0.064 Sum_probs=59.0
Q ss_pred EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC------CeEEEEeCCCCeEE
Q 019290 57 RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY------FGLMVVGPNGGQAQ 130 (343)
Q Consensus 57 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~------~gi~~~d~~~~~~~ 130 (343)
.+++||+.+.+|.........+ .....-+.++.. ++.||+-... +.+++||+++.+++
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p--------------~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 114 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVP--------------RISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVKNEWT 114 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCC--------------CCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCCCEEE
Confidence 5899999998887653211000 000001233333 4677766221 24889999988888
Q ss_pred EcccccC-CCCc-cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290 131 QLASSAG-GIPF-RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY 197 (343)
Q Consensus 131 ~~~~~~~-~~~~-~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 197 (343)
.+..... ..+. ..-+.+++.. +.||+--.....+. ......-..+++||+++.+.+.+.
T Consensus 115 ~~~~~~~~~~p~~R~~~~~~~~~--~~iyv~GG~~~~~~------~~~~~~~~~v~~yd~~~~~W~~l~ 175 (341)
T PLN02153 115 FLTKLDEEGGPEARTFHSMASDE--NHVYVFGGVSKGGL------MKTPERFRTIEAYNIADGKWVQLP 175 (341)
T ss_pred EeccCCCCCCCCCceeeEEEEEC--CEEEEECCccCCCc------cCCCcccceEEEEECCCCeEeeCC
Confidence 7643211 1111 1223444443 78888432100000 000000135889999888877654
No 264
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=92.60 E-value=2.9 Score=39.35 Aligned_cols=102 Identities=18% Similarity=0.125 Sum_probs=60.7
Q ss_pred ceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCC--CeEEEEEccCccccccceeeecCCCCCCceeeCCCC
Q 019290 181 GRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT--LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKG 258 (343)
Q Consensus 181 ~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G 258 (343)
..+++++.++++...+.+-........++|||+.|.++...+ -.||.+|+++.. ...+....+....-...+||
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~----~~~Lt~~~gi~~~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN----LPRLTNGFGINTSPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc----ceecccCCccccCccCCCCC
Confidence 468888888777666655334445667889999888876554 457777776632 22233322222233456777
Q ss_pred C-EEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEee
Q 019290 259 E-FWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLD 308 (343)
Q Consensus 259 ~-lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~ 308 (343)
+ |..++...+. ..|++++++|+....+.
T Consensus 294 ~~ivf~Sdr~G~----------------------p~I~~~~~~g~~~~riT 322 (425)
T COG0823 294 SKIVFTSDRGGR----------------------PQIYLYDLEGSQVTRLT 322 (425)
T ss_pred CEEEEEeCCCCC----------------------cceEEECCCCCceeEee
Confidence 4 4444443222 36788888877655543
No 265
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.49 E-value=9.9 Score=37.69 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=98.4
Q ss_pred ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290 23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK 102 (343)
Q Consensus 23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~ 102 (343)
.+..++++++. ..-++.++|||.++.++--+..+-.|-.++-++ |..- +...-.+..|.
T Consensus 499 l~~~rtLel~d--dvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF--flsL-----------------YGHkLPV~smD 557 (888)
T KOG0306|consen 499 LKHTRTLELED--DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF--FLSL-----------------YGHKLPVLSMD 557 (888)
T ss_pred eccceEEeccc--cEEEEEEcCCCcEEEEEeccCeEEEEEecceee--eeee-----------------cccccceeEEe
Confidence 44557777775 578999999999777887777777766666433 2210 11111245777
Q ss_pred EeCCCCeEEEEeCCC-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCc
Q 019290 103 FNPVTCDLYIADAYF-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSG 181 (343)
Q Consensus 103 ~~~~~~~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~ 181 (343)
+++ +..+.++...+ .|-.+.++=|.=+.-.... ...+..+.+-|+ ..++|+... .+
T Consensus 558 IS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAH----dDSvm~V~F~P~-~~~FFt~gK-----------------D~ 614 (888)
T KOG0306|consen 558 ISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAH----DDSVMSVQFLPK-THLFFTCGK-----------------DG 614 (888)
T ss_pred ccC-CcCeEEeccCCCceEEeccccchhhhhhhcc----cCceeEEEEccc-ceeEEEecC-----------------cc
Confidence 887 56666654333 3555544434322211111 134667778884 788886643 45
Q ss_pred eEEEEeCCCCc-eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290 182 RLLKYDPLKKN-VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ 231 (343)
Q Consensus 182 ~v~~~d~~~~~-~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~ 231 (343)
.|-+||.+.-+ +..+.........+++.|+|++ .|+.+.+..|..|...
T Consensus 615 kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~-vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 615 KVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSF-VVSSSHDKSIRLWERT 664 (888)
T ss_pred eEEeechhhhhhheeeccchheeeeeEEcCCCCe-EEeccCCceeEeeecc
Confidence 67778754211 2233344556788999999984 4566667888888754
No 266
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=92.28 E-value=2.6 Score=37.64 Aligned_cols=151 Identities=14% Similarity=0.105 Sum_probs=86.2
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC
Q 019290 38 ESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF 117 (343)
Q Consensus 38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~ 117 (343)
.-+|.+-+.+++..+..+..+..||-++++..... ......+.++.+.. |.+.-+....
T Consensus 239 SVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tl-------------------ihHceaVLhlrf~n--g~mvtcSkDr 297 (499)
T KOG0281|consen 239 SVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTL-------------------IHHCEAVLHLRFSN--GYMVTCSKDR 297 (499)
T ss_pred cEEeeeccceEEEecCCCceEEEEeccCCchhhHH-------------------hhhcceeEEEEEeC--CEEEEecCCc
Confidence 44555555567788889999999999887643211 12223456677763 4444443334
Q ss_pred eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290 118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY 197 (343)
Q Consensus 118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 197 (343)
.+..+|.....-..+.....+. ...+|.+.+|. ++.++.++ .-.|-.++..+++..+..
T Consensus 298 siaVWdm~sps~it~rrVLvGH-rAaVNvVdfd~---kyIVsASg-----------------DRTikvW~~st~efvRtl 356 (499)
T KOG0281|consen 298 SIAVWDMASPTDITLRRVLVGH-RAAVNVVDFDD---KYIVSASG-----------------DRTIKVWSTSTCEFVRTL 356 (499)
T ss_pred eeEEEeccCchHHHHHHHHhhh-hhheeeecccc---ceEEEecC-----------------CceEEEEeccceeeehhh
Confidence 4666666532211111112221 13455555443 55665554 334666777777765443
Q ss_pred cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 198 NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 198 ~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
. .+..|||-..-.+.+.|+.+.+++|..|++..
T Consensus 357 ~--gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 357 N--GHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred h--cccccceehhccCeEEEecCCCceEEEEeccc
Confidence 3 23455554444456899999999999999874
No 267
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.23 E-value=8.4 Score=34.67 Aligned_cols=165 Identities=16% Similarity=0.131 Sum_probs=90.9
Q ss_pred ccccccCCCCCCCceEEEcC---C----CCeeEEEec---------C-CEEEEEEcCCC-----CeEEeeecCCCccccc
Q 019290 25 SYQQLQLPGVVGPESLAFDC---N----GEGPYVGVS---------D-GRILKWKAANS-----GWTEFATTAPHRAREI 82 (343)
Q Consensus 25 ~~~~~~~~~~~~p~~l~~d~---~----g~~l~~~~~---------~-g~i~~~d~~~~-----~~~~~~~~~~~~~~~~ 82 (343)
.+.+++++....+.+++.-. + ...+.+++. . |+|+.|+.... ++..+...
T Consensus 14 ~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-------- 85 (321)
T PF03178_consen 14 VLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-------- 85 (321)
T ss_dssp EEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE--------
T ss_pred EEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE--------
Confidence 34566666555566555432 2 233444432 2 88998887663 33333210
Q ss_pred cCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCe-EEEcccccCCCCccCcceeEEeCCCCeEEEEeC
Q 019290 83 CDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQ-AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDS 161 (343)
Q Consensus 83 ~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~ 161 (343)
...+.+..++.- ++.|.++ .+..|+.++.+..+ +......... ..+.++.... +.++++|.
T Consensus 86 ----------~~~g~V~ai~~~--~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~---~~i~sl~~~~--~~I~vgD~ 147 (321)
T PF03178_consen 86 ----------EVKGPVTAICSF--NGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSP---FYITSLSVFK--NYILVGDA 147 (321)
T ss_dssp ----------EESS-EEEEEEE--TTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BS---SSEEEEEEET--TEEEEEES
T ss_pred ----------eecCcceEhhhh--CCEEEEe-ecCEEEEEEccCcccchhhheecce---EEEEEEeccc--cEEEEEEc
Confidence 112345667666 4677777 46777777776665 5554332211 2466676665 69999886
Q ss_pred CcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCC--cceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 162 SIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSF--PNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.. +-.+++|+.+..++..+..+... ...+++-.+++.+.+++ ..+.|+.+..+.
T Consensus 148 ~~----------------sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D-~~gnl~~l~~~~ 203 (321)
T PF03178_consen 148 MK----------------SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD-KDGNLFVLRYNP 203 (321)
T ss_dssp SS----------------SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE-TTSEEEEEEE-S
T ss_pred cc----------------CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc-CCCeEEEEEECC
Confidence 42 33577888765556655544332 33444444555555554 578888887653
No 268
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.23 E-value=6.2 Score=40.03 Aligned_cols=154 Identities=12% Similarity=0.084 Sum_probs=86.4
Q ss_pred CCceEEEcCCC-CeeEEE-ecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeE-------EEeCC
Q 019290 36 GPESLAFDCNG-EGPYVG-VSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI-------KFNPV 106 (343)
Q Consensus 36 ~p~~l~~d~~g-~~l~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi-------~~~~~ 106 (343)
.|..+...... +.+..+ .+...||++|.+++++..=.... .......+ .+++
T Consensus 482 ~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~------------------~~~~v~~~~p~~K~aqlt~- 542 (794)
T PF08553_consen 482 TPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVH------------------DDIPVVDIAPDSKFAQLTN- 542 (794)
T ss_pred CcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecC------------------CCcceeEecccccccccCC-
Confidence 46666655543 333443 34578999999887654221111 00001112 1232
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeEEEc-ccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290 107 TCDLYIADAYFGLMVVGPNGGQAQQL-ASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK 185 (343)
Q Consensus 107 ~~~l~v~~~~~gi~~~d~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 185 (343)
...|+|-..++++++|++-..-+.+ .....-...+....++-+. +|.|.++.. .|.|-.
T Consensus 543 -e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~-~G~iavgs~------------------~G~IRL 602 (794)
T PF08553_consen 543 -EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTE-DGYIAVGSN------------------KGDIRL 602 (794)
T ss_pred -CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecC-CceEEEEeC------------------CCcEEe
Confidence 3566666678899999975321111 1111112224456778888 599988554 566777
Q ss_pred EeCCCCceEEeecCC-CCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290 186 YDPLKKNVTVMYNGL-SFPNGVALSNNNSFLLLAESATLKILRFWL 230 (343)
Q Consensus 186 ~d~~~~~~~~~~~~~-~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~ 230 (343)
||.-+.+-++...++ ....+++++.||+.+..+. ...|..++.
T Consensus 603 yd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 603 YDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred ecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 776544444445454 4467999999998665543 456666664
No 269
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=92.22 E-value=0.24 Score=25.77 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=15.6
Q ss_pred ccCcceeEEeCCCCeEEEEeC
Q 019290 141 FRFTNDLDIDPNTGIVYFTDS 161 (343)
Q Consensus 141 ~~~~~~i~~d~~dg~l~v~~~ 161 (343)
.+.+.++..|+ +|+||+++.
T Consensus 4 ~n~I~~i~~D~-~G~lWigT~ 23 (24)
T PF07494_consen 4 NNNIYSIYEDS-DGNLWIGTY 23 (24)
T ss_dssp SSCEEEEEE-T-TSCEEEEET
T ss_pred CCeEEEEEEcC-CcCEEEEeC
Confidence 35788999999 599999764
No 270
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=92.17 E-value=7 Score=33.65 Aligned_cols=84 Identities=19% Similarity=0.296 Sum_probs=50.0
Q ss_pred eEEEEeCCCCceEEee-------cCCCCcceeEEecCC---CEEEEEEcCCCeEEEEEccC--cccccc--ceeeecCCC
Q 019290 182 RLLKYDPLKKNVTVMY-------NGLSFPNGVALSNNN---SFLLLAESATLKILRFWLQG--ERTTYT--PQLFAEMPR 247 (343)
Q Consensus 182 ~v~~~d~~~~~~~~~~-------~~~~~~~~i~~~~d~---~~lyv~~~~~~~i~~~~~~~--~~~~~~--~~~~~~~~~ 247 (343)
.+|.+|++.+.++.+. +..+.+.|+++..+. ....+.+...+.+..|.+-. ++..+. .+.| +.+.
T Consensus 127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~f-k~~t 205 (364)
T COG4247 127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQF-KIPT 205 (364)
T ss_pred EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEee-ecCC
Confidence 4677888776665443 335667889887653 33233445568888888653 222111 1222 2444
Q ss_pred CCCceeeCC-CCCEEEEecc
Q 019290 248 FPDNIKSDS-KGEFWIAMNS 266 (343)
Q Consensus 248 ~p~~i~~d~-~G~lwi~~~~ 266 (343)
...|++.|. -|.|||+.-+
T Consensus 206 QTEG~VaDdEtG~LYIaeEd 225 (364)
T COG4247 206 QTEGMVADDETGFLYIAEED 225 (364)
T ss_pred cccceeeccccceEEEeecc
Confidence 567887754 5999999765
No 271
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.04 E-value=4.4 Score=41.31 Aligned_cols=117 Identities=15% Similarity=0.230 Sum_probs=62.2
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCC-CCeEEeeec--CCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEE
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAAN-SGWTEFATT--APHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYI 112 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v 112 (343)
...|+-+.+||..+.++..+.-|+.+.... +.-..+-.. ..+.. +- -.........+.+..++.++ ++.+++
T Consensus 71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE-~w---k~~~~l~~H~~DV~Dv~Wsp-~~~~lv 145 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVE-SW---KVVSILRGHDSDVLDVNWSP-DDSLLV 145 (942)
T ss_pred ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccc-ee---eEEEEEecCCCccceeccCC-CccEEE
Confidence 467888999999777887777666665542 110111000 00000 00 00000001122345667777 666666
Q ss_pred EeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCC
Q 019290 113 ADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS 162 (343)
Q Consensus 113 ~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~ 162 (343)
.... +.|..+|..+.+........ ...+-++.+||. |+.+.+...
T Consensus 146 S~s~DnsViiwn~~tF~~~~vl~~H----~s~VKGvs~DP~-Gky~ASqsd 191 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAKTFELLKVLRGH----QSLVKGVSWDPI-GKYFASQSD 191 (942)
T ss_pred EecccceEEEEccccceeeeeeecc----cccccceEECCc-cCeeeeecC
Confidence 6444 44888988765322222222 245789999996 887776544
No 272
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.73 E-value=11 Score=35.10 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=52.3
Q ss_pred ccccccccCCCCC--CCceEEEc-CCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCC-e
Q 019290 23 SKSYQQLQLPGVV--GPESLAFD-CNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGR-P 98 (343)
Q Consensus 23 ~~~~~~~~~~~~~--~p~~l~~d-~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p 98 (343)
-+..+|..+|.-+ ...+|.+- .+.+.-|+.-..|.|++-+..+..|......... ...... -
T Consensus 74 G~~W~q~~~p~~~~~~L~~V~F~~~d~~~GwAVG~~G~IL~T~DGG~tW~~~~~~~~~--------------~~~~~~~l 139 (398)
T PLN00033 74 SSEWEQVDLPIDPGVVLLDIAFVPDDPTHGFLLGTRQTLLETKDGGKTWVPRSIPSAE--------------DEDFNYRF 139 (398)
T ss_pred CCccEEeecCCCCCCceEEEEeccCCCCEEEEEcCCCEEEEEcCCCCCceECccCccc--------------ccccccce
Confidence 3357777888433 45688883 2444467665688888877777778764211100 011111 2
Q ss_pred eeEEEeCCCCeEEEEeCCCeEEEEeCCCC-eEEEc
Q 019290 99 LGIKFNPVTCDLYIADAYFGLMVVGPNGG-QAQQL 132 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~~~~gi~~~d~~~~-~~~~~ 132 (343)
.++.+. +++.|++ ...|+.....+.| .++.+
T Consensus 140 ~~v~f~--~~~g~~v-G~~G~il~T~DgG~tW~~~ 171 (398)
T PLN00033 140 NSISFK--GKEGWII-GKPAILLHTSDGGETWERI 171 (398)
T ss_pred eeeEEE--CCEEEEE-cCceEEEEEcCCCCCceEC
Confidence 567776 4668887 3567555555544 35544
No 273
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.70 E-value=9.9 Score=34.36 Aligned_cols=153 Identities=13% Similarity=0.139 Sum_probs=81.7
Q ss_pred eEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcce-eEEeCCCCeEEEEeCCcccccccceeeeeecC
Q 019290 100 GIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTND-LDIDPNTGIVYFTDSSIYFQRRQYFMSIATGD 178 (343)
Q Consensus 100 gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~-i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~ 178 (343)
.+.+. .++|.|.- ...||.||.++-++ +......++ .+.+ .|..++.++-|++=.+ ..
T Consensus 92 ~VrmN--r~RLvV~L-ee~IyIydI~~Mkl--LhTI~t~~~--n~~gl~AlS~n~~n~ylAyp~--------------s~ 150 (391)
T KOG2110|consen 92 AVRMN--RKRLVVCL-EESIYIYDIKDMKL--LHTIETTPP--NPKGLCALSPNNANCYLAYPG--------------ST 150 (391)
T ss_pred EEEEc--cceEEEEE-cccEEEEeccccee--ehhhhccCC--CccceEeeccCCCCceEEecC--------------CC
Confidence 44455 46777763 44599999986443 321111111 1222 2344422333443222 12
Q ss_pred CCceEEEEeCCCCce-EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEE-EccCccccccceeeecCCCCCCceeeCC
Q 019290 179 RSGRLLKYDPLKKNV-TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRF-WLQGERTTYTPQLFAEMPRFPDNIKSDS 256 (343)
Q Consensus 179 ~~~~v~~~d~~~~~~-~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 256 (343)
..|.|+.||..+-+. ..+..+-.....++|+++|. +..+.+..|+|.|. .+....++.+++.-. .+.....+++++
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG~-~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRGT-YPVSIYSLSFSP 228 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCCc-eeeEEEEEEECC
Confidence 257799998764433 23344555678999999986 56666777777664 443221112221111 111234578899
Q ss_pred CCCEEEEeccCCCcccccc
Q 019290 257 KGEFWIAMNSARGKIESNK 275 (343)
Q Consensus 257 ~G~lwi~~~~~~~~~~~~~ 275 (343)
++.+..++.+.+...+++.
T Consensus 229 ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 229 DSQFLAASSNTETVHIFKL 247 (391)
T ss_pred CCCeEEEecCCCeEEEEEe
Confidence 9998888776455444333
No 274
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.43 E-value=1.2 Score=26.33 Aligned_cols=39 Identities=28% Similarity=0.328 Sum_probs=26.8
Q ss_pred CeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEe
Q 019290 154 GIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALS 209 (343)
Q Consensus 154 g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~ 209 (343)
+++|+++.. .+.|..+|..+++...-..-...|.+++++
T Consensus 4 ~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 4 TKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 579998865 567889998777654434345667777653
No 275
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.40 E-value=12 Score=34.56 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=60.5
Q ss_pred CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeC
Q 019290 45 NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGP 124 (343)
Q Consensus 45 ~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~ 124 (343)
+|+ +|++..++.++.+|..+++..=-.... .. ....+-.+-. ++.+|+.+....++.+|.
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~-----------------~~-~~~~~~~v~~-~~~v~~~s~~g~~~al~~ 170 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVG-----------------GS-PYYASPPVVG-DGTVYVGTDDGHLYALNA 170 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecC-----------------CC-eEEecCcEEc-CcEEEEecCCCeEEEEEc
Confidence 888 888888899999999655432111000 00 0111212333 678888853456999999
Q ss_pred CCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290 125 NGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV 193 (343)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 193 (343)
++|+.................... .. ++.+|++..+ . .+.++.+|+.+|..
T Consensus 171 ~tG~~~W~~~~~~~~~~~~~~~~~-~~-~~~vy~~~~~-~---------------~~~~~a~~~~~G~~ 221 (370)
T COG1520 171 DTGTLKWTYETPAPLSLSIYGSPA-IA-SGTVYVGSDG-Y---------------DGILYALNAEDGTL 221 (370)
T ss_pred cCCcEEEEEecCCccccccccCce-ee-cceEEEecCC-C---------------cceEEEEEccCCcE
Confidence 988765542222111111122222 33 4788886542 0 12577777766654
No 276
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=91.38 E-value=9.6 Score=33.59 Aligned_cols=109 Identities=14% Similarity=0.024 Sum_probs=73.9
Q ss_pred eeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290 98 PLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG 177 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~ 177 (343)
+..+.+++..+.|+++.+...+..|+..+...+... ..+ ..+.+.++.+ +..+|.++.
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~---~plL~c~F~d-~~~~~~G~~---------------- 73 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHG---APLLDCAFAD-ESTIVTGGL---------------- 73 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecC---CceeeeeccC-CceEEEecc----------------
Confidence 456778887788999976555888887654322211 111 2245666666 478888654
Q ss_pred CCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290 178 DRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ 231 (343)
Q Consensus 178 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~ 231 (343)
.+.|-++|..++....+..+......+...+-. ...++..-+++|-.||..
T Consensus 74 --dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 74 --DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPR 124 (323)
T ss_pred --CceEEEEEecCCcceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEecc
Confidence 467999999888777666666666777776433 367787788999999864
No 277
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.28 E-value=5.6 Score=38.61 Aligned_cols=161 Identities=16% Similarity=0.177 Sum_probs=92.0
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY 116 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~ 116 (343)
..+++.-.+|+.+.....+-.|..|+...+. .+.. ..+......+..+++...++.+.++..-
T Consensus 76 VNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~--~~c~---------------stir~H~DYVkcla~~ak~~~lvaSgGL 138 (735)
T KOG0308|consen 76 VNDIILCGNGKTLISASSDTTVKVWNAHKDN--TFCM---------------STIRTHKDYVKCLAYIAKNNELVASGGL 138 (735)
T ss_pred HhhHHhhcCCCceEEecCCceEEEeecccCc--chhH---------------hhhhcccchheeeeecccCceeEEecCC
Confidence 3455666677656666777778888775432 1100 0001112245566674424455544222
Q ss_pred -CeEEEEeCCCCeEEEcccc-------cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290 117 -FGLMVVGPNGGQAQQLASS-------AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP 188 (343)
Q Consensus 117 -~gi~~~d~~~~~~~~~~~~-------~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 188 (343)
..|+.+|.+++..+.+... ....+...+++++..+. |.++++..- .+-|..||+
T Consensus 139 D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t-~t~ivsGgt-----------------ek~lr~wDp 200 (735)
T KOG0308|consen 139 DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT-GTIIVSGGT-----------------EKDLRLWDP 200 (735)
T ss_pred CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc-ceEEEecCc-----------------ccceEEecc
Confidence 3499999987743222111 11122345777887774 777774432 345777898
Q ss_pred CCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290 189 LKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE 233 (343)
Q Consensus 189 ~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~ 233 (343)
.+++.. .+...-.....+.++.||..+. +.+.++.|..|++..+
T Consensus 201 rt~~kimkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 201 RTCKKIMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQ 245 (735)
T ss_pred ccccceeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeecccc
Confidence 766533 3343334567788888888765 4456899999998653
No 278
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=91.26 E-value=1.2 Score=31.52 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=24.6
Q ss_pred CCcCCeeeEEEeCCCCeEEEEeCCCe-EEEEeCC
Q 019290 93 PLCGRPLGIKFNPVTCDLYIADAYFG-LMVVGPN 125 (343)
Q Consensus 93 ~~~~~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~ 125 (343)
.....|+||.++++++.|||++...+ |+.+..+
T Consensus 51 ~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 51 SGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 34456899999997789999976544 7777654
No 279
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=91.25 E-value=5.5 Score=36.10 Aligned_cols=159 Identities=11% Similarity=0.091 Sum_probs=86.5
Q ss_pred CceEEEcC--CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 37 PESLAFDC--NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 37 p~~l~~d~--~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
-.+|+++| .|. +-++....+|+.+.+.++.|..=..+. ......+.+++.++...+++.+.
T Consensus 214 Gy~LdWSp~~~g~-LlsGDc~~~I~lw~~~~g~W~vd~~Pf----------------~gH~~SVEDLqWSptE~~vfaSc 276 (440)
T KOG0302|consen 214 GYGLDWSPIKTGR-LLSGDCVKGIHLWEPSTGSWKVDQRPF----------------TGHTKSVEDLQWSPTEDGVFASC 276 (440)
T ss_pred ceeeecccccccc-cccCccccceEeeeeccCceeecCccc----------------cccccchhhhccCCccCceEEee
Confidence 34666666 355 555556667888888887776422110 01111245677777556666664
Q ss_pred CCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290 115 AYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV 193 (343)
Q Consensus 115 ~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 193 (343)
...| |..+|.+.++-+..... .+...-+|-|....+ -.+.++... .|.+-.+|...-+.
T Consensus 277 S~DgsIrIWDiRs~~~~~~~~~--kAh~sDVNVISWnr~-~~lLasG~D-----------------dGt~~iwDLR~~~~ 336 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPKKAAVST--KAHNSDVNVISWNRR-EPLLASGGD-----------------DGTLSIWDLRQFKS 336 (440)
T ss_pred ecCceEEEEEecCCCccceeEe--eccCCceeeEEccCC-cceeeecCC-----------------CceEEEEEhhhccC
Confidence 4555 88889887643222111 111123555555442 223332211 34454555532222
Q ss_pred E----EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 194 T----VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 194 ~----~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
. .+.........+.++|.....+.+....++|..||+.-
T Consensus 337 ~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 337 GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 1 22223345678889887777777777789999999863
No 280
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=91.21 E-value=15 Score=35.65 Aligned_cols=73 Identities=10% Similarity=0.041 Sum_probs=39.4
Q ss_pred CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC-eEEEEe
Q 019290 45 NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF-GLMVVG 123 (343)
Q Consensus 45 ~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~-gi~~~d 123 (343)
..++||++.++|.|-.||.....+. ..... + +.+....+....+...+ +...+|...++ .+..+|
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr---~ee~~----l------k~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFR---LEERQ----L------KKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWD 128 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcc---hhhhh----h------cccccccceeEeeccCC-CceeEEEccCCceeeeee
Confidence 3557788888998988876543322 00000 0 01112223344555555 55566654443 388888
Q ss_pred CCCCeEEE
Q 019290 124 PNGGQAQQ 131 (343)
Q Consensus 124 ~~~~~~~~ 131 (343)
.++.+...
T Consensus 129 vk~s~l~G 136 (720)
T KOG0321|consen 129 VKTSRLVG 136 (720)
T ss_pred eccceeec
Confidence 88776544
No 281
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.17 E-value=14 Score=35.19 Aligned_cols=157 Identities=14% Similarity=0.041 Sum_probs=92.5
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
..-++.+.+|++.+-.+.+++.++.||....+..... ....+.+..++++|-...|+....
T Consensus 303 eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~-------------------~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 303 EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF-------------------TEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred eeeeeEECCCCCeeccCCCccceEeccCCCccccEEE-------------------eccceeeeEeeeCCCccCceEEcC
Confidence 3568899999996667788899999998543322211 122334667888885556655433
Q ss_pred C--C-eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc
Q 019290 116 Y--F-GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN 192 (343)
Q Consensus 116 ~--~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 192 (343)
+ + .|..+|..+++....... ...+-.|+..+..+.+..+-... ...-.||+|-. -..
T Consensus 364 Gs~D~~i~fwn~~~g~~i~~vdt-----gsQVcsL~Wsk~~kEi~sthG~s--------------~n~i~lw~~ps-~~~ 423 (484)
T KOG0305|consen 364 GSADRCIKFWNTNTGARIDSVDT-----GSQVCSLIWSKKYKELLSTHGYS--------------ENQITLWKYPS-MKL 423 (484)
T ss_pred CCcccEEEEEEcCCCcEeccccc-----CCceeeEEEcCCCCEEEEecCCC--------------CCcEEEEeccc-cce
Confidence 3 2 377788887754332221 14577788887534555433221 11224666632 123
Q ss_pred eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
+..+..+....-.++++|||..+..+ ..+..|..|++-+
T Consensus 424 ~~~l~gH~~RVl~la~SPdg~~i~t~-a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 424 VAELLGHTSRVLYLALSPDGETIVTG-AADETLRFWNLFD 462 (484)
T ss_pred eeeecCCcceeEEEEECCCCCEEEEe-cccCcEEeccccC
Confidence 33334444556778899999866544 4577888877654
No 282
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=91.07 E-value=17 Score=37.94 Aligned_cols=188 Identities=19% Similarity=0.248 Sum_probs=108.1
Q ss_pred ccCCCCCCCceEEEcCCCC-eeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC
Q 019290 29 LQLPGVVGPESLAFDCNGE-GPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT 107 (343)
Q Consensus 29 ~~~~~~~~p~~l~~d~~g~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~ 107 (343)
+++++...+..+.++...+ ++|.......+++..........+. ....-.+.+++.|.-.
T Consensus 431 ~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~-------------------~~g~~~~~~lavD~~~ 491 (877)
T KOG1215|consen 431 RPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELC-------------------GDGLCIPEGLAVDWIG 491 (877)
T ss_pred EEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEe-------------------ccCccccCcEEEEecc
Confidence 3344434455555655433 4556666777777655443222211 1222346789999878
Q ss_pred CeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290 108 CDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY 186 (343)
Q Consensus 108 ~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 186 (343)
+++|.++.... +...+.+......+.... ...+..+++++..+.+++++.+. ..++.|-
T Consensus 492 ~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~----l~~~r~~~v~p~~g~~~wtd~~~----------------~~~i~ra 551 (877)
T KOG1215|consen 492 DNIYWTDEGNCLIEVADLDGSSRKVLVSKD----LDLPRSIAVDPEKGLMFWTDWGQ----------------PPRIERA 551 (877)
T ss_pred CCceecccCCceeEEEEccCCceeEEEecC----CCCccceeeccccCeeEEecCCC----------------Cchhhhh
Confidence 89999987654 555554433212222111 13477899999778899988652 1145554
Q ss_pred eCCCCceEEeec-CCCCcceeEEecCCCEEEEEEcCCC-eEEEEEccCccccccceeeecCCCCCCceeeCCCC
Q 019290 187 DPLKKNVTVMYN-GLSFPNGVALSNNNSFLLLAESATL-KILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKG 258 (343)
Q Consensus 187 d~~~~~~~~~~~-~~~~~~~i~~~~d~~~lyv~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G 258 (343)
..+......+.. +...+++++++--.+.+|+.+.... .+...+.++... . .........|.++.+-.+.
T Consensus 552 ~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r-~--~~~~~~~~~p~~~~~~~~~ 622 (877)
T KOG1215|consen 552 SLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNR-R--VVDSEDLPHPFGLSVFEDY 622 (877)
T ss_pred cCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCce-E--EeccccCCCceEEEEecce
Confidence 444333333333 3577999999877788999988777 688888776332 1 1111223356666654433
No 283
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.92 E-value=9 Score=36.78 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=43.3
Q ss_pred eeEEEeCCCCe-EEEEeC-------------CCeEEEEeCCCCeEEEcccc---c----C--------------CCC--c
Q 019290 99 LGIKFNPVTCD-LYIADA-------------YFGLMVVGPNGGQAQQLASS---A----G--------------GIP--F 141 (343)
Q Consensus 99 ~gi~~~~~~~~-l~v~~~-------------~~gi~~~d~~~~~~~~~~~~---~----~--------------~~~--~ 141 (343)
|.+...+ +|+ |+.+.. .+.|..+| .+|++...... . . ... =
T Consensus 193 HD~~~l~-nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW 270 (477)
T PF05935_consen 193 HDIDELP-NGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDW 270 (477)
T ss_dssp S-EEE-T-TS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS
T ss_pred cccEECC-CCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCc
Confidence 5677777 544 444431 35689999 77877654221 0 0 000 1
Q ss_pred cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290 142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY 197 (343)
Q Consensus 142 ~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 197 (343)
.++|++..++.++.|.++-.. ...|+.+|..++++.-+.
T Consensus 271 ~H~Nsi~yd~~dd~iivSsR~-----------------~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 271 LHINSIDYDPSDDSIIVSSRH-----------------QSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp --EEEEEEETTTTEEEEEETT-----------------T-EEEEEE-TTS-EEEEE
T ss_pred cccCccEEeCCCCeEEEEcCc-----------------ceEEEEEECCCCcEEEEe
Confidence 457899999866889997765 446888887777776544
No 284
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.64 E-value=11 Score=33.17 Aligned_cols=75 Identities=9% Similarity=0.059 Sum_probs=51.4
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEcccccCCCCc---cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290 110 LYIADAYFGLMVVGPNGGQAQQLASSAGGIPF---RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY 186 (343)
Q Consensus 110 l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~---~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 186 (343)
+-+.+....|..+|.++++++.+....-..+. .-+.+|..||.+++|+++-.. +...-+||.+
T Consensus 71 IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~D--------------Gh~nLGvy~l 136 (339)
T PF09910_consen 71 IDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARAD--------------GHANLGVYSL 136 (339)
T ss_pred EEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecC--------------CcceeeeEEE
Confidence 33333446788999998988877544322222 336788999977889987543 3335679999
Q ss_pred eCCCCceEEeec
Q 019290 187 DPLKKNVTVMYN 198 (343)
Q Consensus 187 d~~~~~~~~~~~ 198 (343)
|..+++.+.+..
T Consensus 137 dr~~g~~~~L~~ 148 (339)
T PF09910_consen 137 DRRTGKAEKLSS 148 (339)
T ss_pred cccCCceeeccC
Confidence 999998887654
No 285
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.61 E-value=12 Score=33.15 Aligned_cols=146 Identities=21% Similarity=0.180 Sum_probs=74.0
Q ss_pred CeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290 97 RPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 97 ~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
...+..+. ++..||++...|+..+|..+-+--.+...... +..-.+++++.. ++.|++...
T Consensus 130 yaygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~-~~~d~~~v~ISG--n~AYvA~~d-------------- 190 (370)
T COG5276 130 YAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-PGGDTHDVAISG--NYAYVAWRD-------------- 190 (370)
T ss_pred eEEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeecc-CCCCceeEEEec--CeEEEEEeC--------------
Confidence 34455555 78999999889999998765332222211111 112236788887 588887653
Q ss_pred cCCCceEEEEeCCCCceEEee---cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCce
Q 019290 177 GDRSGRLLKYDPLKKNVTVMY---NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNI 252 (343)
Q Consensus 177 ~~~~~~v~~~d~~~~~~~~~~---~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i 252 (343)
+++..+|.....--.+. .......+.-++ +++.|++.- +..+...+.+++.. ..++-. ...-|.++
T Consensus 191 ----~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vs--dnr~y~vvy-~egvlivd~s~~ss---p~~~gsyet~~p~~~ 260 (370)
T COG5276 191 ----GGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVS--DNRAYLVVY-DEGVLIVDVSGPSS---PTVFGSYETSNPVSI 260 (370)
T ss_pred ----CCeEEEEccCCCCCeEEEEEecCCceEEEEec--CCeeEEEEc-ccceEEEecCCCCC---ceEeeccccCCcccc
Confidence 34666654322111111 111123334343 334566654 44577777665432 122211 11124443
Q ss_pred --eeCCCCCEEEEeccCCCcc
Q 019290 253 --KSDSKGEFWIAMNSARGKI 271 (343)
Q Consensus 253 --~~d~~G~lwi~~~~~~~~~ 271 (343)
..=++...|++...++.++
T Consensus 261 s~v~Vs~~~~Yvadga~gl~~ 281 (370)
T COG5276 261 STVPVSGEYAYVADGAKGLPI 281 (370)
T ss_pred cceecccceeeeeccccCcee
Confidence 2223556788887655443
No 286
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=90.58 E-value=16 Score=34.81 Aligned_cols=60 Identities=10% Similarity=0.033 Sum_probs=38.5
Q ss_pred CcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEec
Q 019290 202 FPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMN 265 (343)
Q Consensus 202 ~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~ 265 (343)
.++..+|++||++|-+.. .++.|.+|+.+....+..++.+ ..+ --.++.++||++.+...
T Consensus 292 ~in~f~FS~DG~~LA~VS-qDGfLRvF~fdt~eLlg~mkSY--FGG-LLCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVS-QDGFLRIFDFDTQELLGVMKSY--FGG-LLCVCWSPDGKYIVTGG 351 (636)
T ss_pred cccceeEcCCCceEEEEe-cCceEEEeeccHHHHHHHHHhh--ccc-eEEEEEcCCccEEEecC
Confidence 679999999999887664 5789999998764332222222 111 11245688997666543
No 287
>PLN02153 epithiospecifier protein
Probab=90.45 E-value=13 Score=33.68 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=44.2
Q ss_pred eeEEEeCCCCeEEEEeCC--------CeEEEEeCCCCeEEEcccccCCCCccC-cceeEEeCCCCeEEEEeCCccccccc
Q 019290 99 LGIKFNPVTCDLYIADAY--------FGLMVVGPNGGQAQQLASSAGGIPFRF-TNDLDIDPNTGIVYFTDSSIYFQRRQ 169 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~~~--------~gi~~~d~~~~~~~~~~~~~~~~~~~~-~~~i~~d~~dg~l~v~~~~~~~~~~~ 169 (343)
++++.. ++.|||.... +.+++||+.+.+++.+........... -..++.- ++.||+--...
T Consensus 26 h~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~------ 95 (341)
T PLN02153 26 HGIAVV--GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRD------ 95 (341)
T ss_pred ceEEEE--CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCC------
Confidence 345554 4678875221 248899999888876543221111111 1223333 36888742210
Q ss_pred ceeeeeecCCCceEEEEeCCCCceEEee
Q 019290 170 YFMSIATGDRSGRLLKYDPLKKNVTVMY 197 (343)
Q Consensus 170 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 197 (343)
.......+++||+.+.+.+.+.
T Consensus 96 ------~~~~~~~v~~yd~~t~~W~~~~ 117 (341)
T PLN02153 96 ------EKREFSDFYSYDTVKNEWTFLT 117 (341)
T ss_pred ------CCCccCcEEEEECCCCEEEEec
Confidence 0011246899999888776543
No 288
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.33 E-value=6.3 Score=39.04 Aligned_cols=148 Identities=16% Similarity=0.149 Sum_probs=80.6
Q ss_pred eeEEEeCCCCeEEEEe-CCCeEEEEeCCCCeEEEccccc-CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290 99 LGIKFNPVTCDLYIAD-AYFGLMVVGPNGGQAQQLASSA-GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~-~~~gi~~~d~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
+.|...++-..|.++. ...+|+.+++............ ....+..+++++....+.++.++...
T Consensus 43 nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~-------------- 108 (839)
T KOG0269|consen 43 NAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST-------------- 108 (839)
T ss_pred ceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecC--------------
Confidence 3455555334555552 2245788877643322211111 11123345566655433344444433
Q ss_pred cCCCceEEEEeCCCC--c--eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCce
Q 019290 177 GDRSGRLLKYDPLKK--N--VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNI 252 (343)
Q Consensus 177 ~~~~~~v~~~d~~~~--~--~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i 252 (343)
.|.|..||.... + ...+...-+..+.++|+.-...+.++.+.++.|-.||+..... ...+-...-..+.+
T Consensus 109 ---nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S---~~t~~~nSESiRDV 182 (839)
T KOG0269|consen 109 ---NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS---KSTFRSNSESIRDV 182 (839)
T ss_pred ---CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc---cccccccchhhhce
Confidence 567888887521 1 1122234456788999988888999999999999999875422 11221111124445
Q ss_pred eeCC-CCCEEEEecc
Q 019290 253 KSDS-KGEFWIAMNS 266 (343)
Q Consensus 253 ~~d~-~G~lwi~~~~ 266 (343)
.+.+ .++.+.+...
T Consensus 183 ~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 183 KFSPGYGNKFASIHD 197 (839)
T ss_pred eeccCCCceEEEecC
Confidence 5554 4677777776
No 289
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=90.31 E-value=13 Score=37.23 Aligned_cols=100 Identities=23% Similarity=0.205 Sum_probs=61.6
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC
Q 019290 38 ESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF 117 (343)
Q Consensus 38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~ 117 (343)
.+.+..+.++.+-++..+|+|..+..-+.+-.... ...+.+.-....++++..++..||-|. ..
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t---------------~t~lHWH~~~V~~L~fS~~G~~LlSGG-~E 272 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET---------------CTLLHWHHDEVNSLSFSSDGAYLLSGG-RE 272 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEecccccccccc---------------ceEEEecccccceeEEecCCceEeecc-cc
Confidence 56778888996667788899888864331100000 011123334567899998566777763 34
Q ss_pred e-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEE
Q 019290 118 G-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFT 159 (343)
Q Consensus 118 g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~ 159 (343)
| +.++..+|++.+-+ +... ..+.++++.+ |+.+|..
T Consensus 273 ~VLv~Wq~~T~~kqfL-PRLg----s~I~~i~vS~-ds~~~sl 309 (792)
T KOG1963|consen 273 GVLVLWQLETGKKQFL-PRLG----SPILHIVVSP-DSDLYSL 309 (792)
T ss_pred eEEEEEeecCCCcccc-cccC----CeeEEEEEcC-CCCeEEE
Confidence 5 67888888874433 3222 3467888888 6887764
No 290
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=90.28 E-value=13 Score=33.15 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=79.6
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe-C
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD-A 115 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~-~ 115 (343)
..++++.+||..+-+...++.|..|+...-+.+++. | -+..-+...|.-+.|.++-..+.|+. .
T Consensus 89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr----------~-----~R~nve~dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHR----------C-----IRQNVEYDHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhh----------H-----hhccccCCCceEEEECCCcceEEEEEcc
Confidence 669999999996666667777777766441111110 0 00001223577788888445554442 2
Q ss_pred CCeEEEE--eCCC-CeEE-Eccccc----CCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEe
Q 019290 116 YFGLMVV--GPNG-GQAQ-QLASSA----GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYD 187 (343)
Q Consensus 116 ~~gi~~~--d~~~-~~~~-~~~~~~----~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 187 (343)
++.++.| +.++ |... ...... +.....-+.++-+.. +..|+..-+ ....|..|+
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~--~~k~imsas----------------~dt~i~lw~ 215 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG--NAKYIMSAS----------------LDTKICLWD 215 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC--CceEEEEec----------------CCCcEEEEe
Confidence 3445555 3322 2111 110000 000001111122222 344442211 145688888
Q ss_pred CCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEc
Q 019290 188 PLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWL 230 (343)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~ 230 (343)
..+..+..+...-......+++|+|+.+.++... --+.+|.+
T Consensus 216 lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFT-pDVkVwE~ 257 (420)
T KOG2096|consen 216 LKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT-PDVKVWEP 257 (420)
T ss_pred cCCceeeeeccccccccceeeCCCCcEEEEecCC-CCceEEEE
Confidence 8744444444444445667889999988777653 44666654
No 291
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=90.21 E-value=5 Score=38.88 Aligned_cols=150 Identities=16% Similarity=0.170 Sum_probs=77.1
Q ss_pred CceEEEcC-CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC-CeEEEEe
Q 019290 37 PESLAFDC-NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT-CDLYIAD 114 (343)
Q Consensus 37 p~~l~~d~-~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-~~l~v~~ 114 (343)
.-++.+|+ |...|-++..+|+|..|....+...+..+.+. ..+....-.+..+-+++-- +-|.++.
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe------------~~lt~h~eKI~slRfHPLAadvLa~as 697 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPE------------KILTIHGEKITSLRFHPLAADVLAVAS 697 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcc------------eeeecccceEEEEEecchhhhHhhhhh
Confidence 34566676 44457777788877666544322221111000 0000111224455555421 2334443
Q ss_pred CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290 115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT 194 (343)
Q Consensus 115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 194 (343)
...-|..+|+.+++...-..... ..+.+++..+ ||+...+.-. .++|..|++.+++..
T Consensus 698 yd~Ti~lWDl~~~~~~~~l~gHt----dqIf~~AWSp-dGr~~AtVcK-----------------Dg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 698 YDSTIELWDLANAKLYSRLVGHT----DQIFGIAWSP-DGRRIATVCK-----------------DGTLRVYEPRSREQP 755 (1012)
T ss_pred ccceeeeeehhhhhhhheeccCc----CceeEEEECC-CCcceeeeec-----------------CceEEEeCCCCCCCc
Confidence 33457888887765432222222 4588999999 6998775533 578999998766543
Q ss_pred EeecC-CC--CcceeEEecCCCEEEEEEc
Q 019290 195 VMYNG-LS--FPNGVALSNNNSFLLLAES 220 (343)
Q Consensus 195 ~~~~~-~~--~~~~i~~~~d~~~lyv~~~ 220 (343)
..... .. ...-|.+.-||+.+.++..
T Consensus 756 v~Eg~gpvgtRgARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 756 VYEGKGPVGTRGARILWACDGRIVIVVGF 784 (1012)
T ss_pred cccCCCCccCcceeEEEEecCcEEEEecc
Confidence 32211 11 1223444456776666654
No 292
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=90.09 E-value=13 Score=33.09 Aligned_cols=171 Identities=13% Similarity=0.104 Sum_probs=83.7
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCC-------eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSG-------WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTC 108 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~ 108 (343)
.-.+..+.|||..+.+.+.+..+..|+..... ...+...+... -..| .+...-...++ |..+..+-
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r---~~eg---~tvydy~wYs~-M~s~qP~t 123 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYR---YQEG---ETVYDYCWYSR-MKSDQPST 123 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEE---eccC---CEEEEEEeeec-cccCCCcc
Confidence 45678899999988888888878777643210 00000000000 0000 00000011111 11122244
Q ss_pred eEEEEeCCCe-EEEEeCCCCeEEEcccccC-CCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEE
Q 019290 109 DLYIADAYFG-LMVVGPNGGQAQQLASSAG-GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKY 186 (343)
Q Consensus 109 ~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 186 (343)
.+|.++.... |..+|.-+|+.+.-..... .......+++.+.+ ||.-.++.. ...|-.|
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy------------------krcirvF 184 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY------------------KRCIRVF 184 (406)
T ss_pred ceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc------------------cceEEEe
Confidence 5666644433 8888888887765432211 12234567899999 576444322 2245556
Q ss_pred eC-CCCceE----EeecC----CCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 187 DP-LKKNVT----VMYNG----LSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 187 d~-~~~~~~----~~~~~----~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
|. ..|... ++..+ ......++++|-...++...+..+++-.|.-++
T Consensus 185 dt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 185 DTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred eccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 65 223221 11111 112355677776665666666666666665444
No 293
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=89.78 E-value=5 Score=34.64 Aligned_cols=70 Identities=24% Similarity=0.179 Sum_probs=45.9
Q ss_pred cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEc
Q 019290 142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAES 220 (343)
Q Consensus 142 ~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~ 220 (343)
..++++.+.+ |+.+..+..- .+++..|+-.+...- .+.......+.++|+++-+ +..+.+
T Consensus 252 pGv~gvrIRp-D~KIlATAGW-----------------D~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-lmAaas 312 (323)
T KOG0322|consen 252 PGVSGVRIRP-DGKILATAGW-----------------DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-LMAAAS 312 (323)
T ss_pred CCccceEEcc-CCcEEeeccc-----------------CCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-hhhhcc
Confidence 4578899999 6998886542 344444444444432 2333446789999999854 666667
Q ss_pred CCCeEEEEEc
Q 019290 221 ATLKILRFWL 230 (343)
Q Consensus 221 ~~~~i~~~~~ 230 (343)
.+.+|..|++
T Consensus 313 kD~rISLWkL 322 (323)
T KOG0322|consen 313 KDARISLWKL 322 (323)
T ss_pred CCceEEeeec
Confidence 7888877764
No 294
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.43 E-value=22 Score=34.65 Aligned_cols=101 Identities=11% Similarity=0.106 Sum_probs=59.5
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
...++.+-|..-.+.++-.+|.+..|+.+++.+..-.... .. ......+-.+++.+.++..
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~-----------------~~--PvRa~kfiaRknWiv~GsD 75 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS-----------------EV--PVRAAKFIARKNWIVTGSD 75 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec-----------------cc--chhhheeeeccceEEEecC
Confidence 4667888888885557778999999998876443211000 00 1122233333677777754
Q ss_pred CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEe
Q 019290 116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTD 160 (343)
Q Consensus 116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~ 160 (343)
...|..|+..|+.-...... ....+..++++|. .-..++.
T Consensus 76 D~~IrVfnynt~ekV~~FeA----H~DyIR~iavHPt-~P~vLts 115 (794)
T KOG0276|consen 76 DMQIRVFNYNTGEKVKTFEA----HSDYIRSIAVHPT-LPYVLTS 115 (794)
T ss_pred CceEEEEecccceeeEEeec----cccceeeeeecCC-CCeEEec
Confidence 45588888877643222221 1246889999995 5544443
No 295
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.34 E-value=19 Score=33.76 Aligned_cols=225 Identities=11% Similarity=0.145 Sum_probs=88.5
Q ss_pred ccccccccCCCC-CCCceEEEc-----------CCCCeeEEE-ecCCEEEEEEcCCC----CeEEeeecCCCccccccCC
Q 019290 23 SKSYQQLQLPGV-VGPESLAFD-----------CNGEGPYVG-VSDGRILKWKAANS----GWTEFATTAPHRAREICDG 85 (343)
Q Consensus 23 ~~~~~~~~~~~~-~~p~~l~~d-----------~~g~~l~~~-~~~g~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~ 85 (343)
.+.+.++++|.. ..++..=+. .+-+.|++. -..++||.+|..+. ++.++..... +.
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~e-----v~-- 124 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEE-----VF-- 124 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHH-----HH--
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHH-----HH--
Confidence 466677778732 233333222 133445543 47789999987542 1211110000 00
Q ss_pred CCCcccCCCcCCeeeEEEeCCCCeEEEEeC-------CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEE
Q 019290 86 STNTTLEPLCGRPLGIKFNPVTCDLYIADA-------YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYF 158 (343)
Q Consensus 86 ~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~-------~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v 158 (343)
.......|+..---+ +|+++|+.. ..|+..+|-+|-++......... ...+-.++...+. .++-+
T Consensus 125 -----~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~-~~~~gYDfw~qpr-~nvMi 196 (461)
T PF05694_consen 125 -----EKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRG-PQPFGYDFWYQPR-HNVMI 196 (461)
T ss_dssp -----HHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-T-T------EEEETT-TTEEE
T ss_pred -----hhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCC-CCCCCCCeEEcCC-CCEEE
Confidence 001223466544455 788888742 13599999887665543322222 2345678888885 44444
Q ss_pred EeCCcccccc---cceee---eeecCCCceEEEEeCCCCceEEeecCC---CCcceeEEe--cCCCEEEEEEcCCCeEEE
Q 019290 159 TDSSIYFQRR---QYFMS---IATGDRSGRLLKYDPLKKNVTVMYNGL---SFPNGVALS--NNNSFLLLAESATLKILR 227 (343)
Q Consensus 159 ~~~~~~~~~~---~~~~~---~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~i~~~--~d~~~lyv~~~~~~~i~~ 227 (343)
+.. |+.. ...+. +..+.-...+..+|..+++......-. ..|-.+.+. |+...-|+....++.||+
T Consensus 197 SSe---Wg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~ 273 (461)
T PF05694_consen 197 SSE---WGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWR 273 (461)
T ss_dssp E-B------HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEE
T ss_pred Eec---cCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEE
Confidence 432 2110 00011 111111346888998877765433211 223334443 445566776667889999
Q ss_pred EEccCccccccceeeec--------------------CCCCCCceeeCCCC-CEEEEecc
Q 019290 228 FWLQGERTTYTPQLFAE--------------------MPRFPDNIKSDSKG-EFWIAMNS 266 (343)
Q Consensus 228 ~~~~~~~~~~~~~~~~~--------------------~~~~p~~i~~d~~G-~lwi~~~~ 266 (343)
|..+.+.. =..+.++. .++++..|.++-|. .||++++.
T Consensus 274 ~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~ 332 (461)
T PF05694_consen 274 FYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWL 332 (461)
T ss_dssp EEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETT
T ss_pred EEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEccc
Confidence 87643211 00111111 13445566666665 68999998
No 296
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=89.30 E-value=5.7 Score=38.81 Aligned_cols=59 Identities=24% Similarity=0.220 Sum_probs=41.4
Q ss_pred CeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCe-EEEcccccCCCCccCcceeEEeCCCCeEEEEeCC
Q 019290 97 RPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQ-AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS 162 (343)
Q Consensus 97 ~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~ 162 (343)
..+.+++.|++-.|.++ .++.++.||+..|. .+++ .+.+ ..++.++... ||..+.+...
T Consensus 14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtL----KgHK-DtVycVAys~-dGkrFASG~a 73 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPL----KGHK-DTVYCVAYAK-DGKRFASGSA 73 (1081)
T ss_pred chheeEECCCCceEEEe-cCCEEEEEeCCCccccccc----cccc-ceEEEEEEcc-CCceeccCCC
Confidence 46789999955567777 67899999997664 2222 2222 3578899998 6999886654
No 297
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=89.29 E-value=1.3 Score=26.10 Aligned_cols=34 Identities=18% Similarity=0.023 Sum_probs=26.7
Q ss_pred CCCCCCceEEEcCCCC-eeEEEecCCEEEEEEcCC
Q 019290 32 PGVVGPESLAFDCNGE-GPYVGVSDGRILKWKAAN 65 (343)
Q Consensus 32 ~~~~~p~~l~~d~~g~-~l~~~~~~g~i~~~d~~~ 65 (343)
.++..|.++++|+.++ ++|++.....|.+.+.++
T Consensus 6 ~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 6 EGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 3566899999999866 555777788899888765
No 298
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.25 E-value=28 Score=35.57 Aligned_cols=141 Identities=14% Similarity=0.065 Sum_probs=70.1
Q ss_pred CeeEEEecCCEEEEEEcCCCCeE-EeeecCC-CccccccCCCCCcccCCCcCCeee-EEEeCCCCeEEEEeC--------
Q 019290 47 EGPYVGVSDGRILKWKAANSGWT-EFATTAP-HRAREICDGSTNTTLEPLCGRPLG-IKFNPVTCDLYIADA-------- 115 (343)
Q Consensus 47 ~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~g-i~~~~~~~~l~v~~~-------- 115 (343)
+.+|+.+.+++|+.+|.++++.. .|..... +...... . .........+ -.+. ++.++++..
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g----~--~~~g~~~~ts~P~V~--~g~VIvG~~v~d~~~~~ 332 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMG----T--TPPGYYYPTSPPLVA--GTTVVIGGRVADNYSTD 332 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccC----c--CCCcccccccCCEEE--CCEEEEEeccccccccc
Confidence 35888889999999999887644 2211100 0000000 0 0000000111 1233 567888742
Q ss_pred -CCe-EEEEeCCCCeEEEccccc---------CCC-----CccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290 116 -YFG-LMVVGPNGGQAQQLASSA---------GGI-----PFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR 179 (343)
Q Consensus 116 -~~g-i~~~d~~~~~~~~~~~~~---------~~~-----~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~ 179 (343)
..| |+-+|.+||+...-.... .+. ..+.-..+++|++.|.+|+......-......+......-
T Consensus 333 ~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y 412 (764)
T TIGR03074 333 EPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKY 412 (764)
T ss_pred CCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccc
Confidence 134 889999999876543221 000 0011245678886678888654321100000010011112
Q ss_pred CceEEEEeCCCCceEE
Q 019290 180 SGRLLKYDPLKKNVTV 195 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~~ 195 (343)
.+.|+.+|.++|+.+-
T Consensus 413 ~~slvALD~~TGk~~W 428 (764)
T TIGR03074 413 SSSLVALDATTGKERW 428 (764)
T ss_pred cceEEEEeCCCCceEE
Confidence 5679999999998763
No 299
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=89.19 E-value=14 Score=32.09 Aligned_cols=118 Identities=10% Similarity=0.055 Sum_probs=69.9
Q ss_pred CCeeeEEEeCCCCeEEEEeCC-CeEEEEeCCCC-eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceee
Q 019290 96 GRPLGIKFNPVTCDLYIADAY-FGLMVVGPNGG-QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMS 173 (343)
Q Consensus 96 ~~p~gi~~~~~~~~l~v~~~~-~gi~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~ 173 (343)
++...++.++..|.++.+... ..|..++...+ .+........ .....+..+|..| .|++..+.+-
T Consensus 15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-~hkrsVRsvAwsp-~g~~La~aSF----------- 81 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-GHKRSVRSVAWSP-HGRYLASASF----------- 81 (312)
T ss_pred CcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc-cchheeeeeeecC-CCcEEEEeec-----------
Confidence 366788899833665444333 34777776532 2322211111 2235688999999 5885554332
Q ss_pred eeecCCCceEEEEeCCCCceEEe---ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290 174 IATGDRSGRLLKYDPLKKNVTVM---YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE 233 (343)
Q Consensus 174 ~~~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~ 233 (343)
...+..+....++++.+ ...-....+++++++|++| .+-+.+..+|.+..+++
T Consensus 82 ------D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~L-ATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 82 ------DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYL-ATCSRDKSVWIWEIDED 137 (312)
T ss_pred ------cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEE-EEeeCCCeEEEEEecCC
Confidence 23444444444565542 2333456789999999865 45567899999998854
No 300
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=89.05 E-value=2.7 Score=35.69 Aligned_cols=119 Identities=20% Similarity=0.293 Sum_probs=54.5
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCccc-CCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290 38 ESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTL-EPLCGRPLGIKFNPVTCDLYIADAY 116 (343)
Q Consensus 38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~gi~~~~~~~~l~v~~~~ 116 (343)
..|++++.|- ||+-..+|.|++..+.+..-....... .+.. ...-....-+.+++ ++.||..+ .
T Consensus 84 ~~i~~d~~G~-LYaV~~~G~lyR~~~~~~~~~~W~~~~------------~~~iG~~GW~~f~~vfa~~-~GvLY~i~-~ 148 (229)
T PF14517_consen 84 KFIFFDPTGV-LYAVTPDGKLYRHPRPTNGSDNWIGGS------------GKKIGGTGWNDFDAVFAGP-NGVLYAIT-P 148 (229)
T ss_dssp SEEEE-TTS--EEEEETT-EEEEES---STT--HHH-H------------SEEEE-SSGGGEEEEEE-T-TS-EEEEE-T
T ss_pred eEEEecCCcc-EEEeccccceeeccCCCccCcchhhcc------------ceecccCCCccceEEEeCC-CccEEEEc-C
Confidence 4899999999 888888999998876443222111000 0000 01111234566666 88888886 4
Q ss_pred Ce-EEEE-eCCCCeEEEccc--ccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290 117 FG-LMVV-GPNGGQAQQLAS--SAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK 190 (343)
Q Consensus 117 ~g-i~~~-d~~~~~~~~~~~--~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 190 (343)
+| +++. .+..+.-..+.. ......-.....|...+ +|.||..+. .+.|||+.+.+
T Consensus 149 dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~-~g~L~~V~~------------------~G~lyr~~~p~ 207 (229)
T PF14517_consen 149 DGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSP-DGNLWAVKS------------------NGKLYRGRPPQ 207 (229)
T ss_dssp TE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-T-TS-EEEE-E------------------TTEEEEES---
T ss_pred CCceEEeCCCCCCCCccccccceeccCCcccceEEeeCC-CCcEEEEec------------------CCEEeccCCcc
Confidence 55 6665 343322111110 11111123356778888 599998633 46788887654
No 301
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.98 E-value=17 Score=32.72 Aligned_cols=79 Identities=13% Similarity=0.105 Sum_probs=45.1
Q ss_pred eEEEeCCCCeEEEEeCC------CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceee
Q 019290 100 GIKFNPVTCDLYIADAY------FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMS 173 (343)
Q Consensus 100 gi~~~~~~~~l~v~~~~------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~ 173 (343)
..+.. ++.||+.... +.+++||+++.+++.+....... . ....++-- ++.||+--...
T Consensus 118 ~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~--r-~~~~~~~~-~~~iYv~GG~~---------- 181 (323)
T TIGR03548 118 SACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP--R-VQPVCVKL-QNELYVFGGGS---------- 181 (323)
T ss_pred eEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC--C-CcceEEEE-CCEEEEEcCCC----------
Confidence 34444 5788886321 35899999998888775432211 1 12223333 37899843210
Q ss_pred eeecCCCceEEEEeCCCCceEEee
Q 019290 174 IATGDRSGRLLKYDPLKKNVTVMY 197 (343)
Q Consensus 174 ~~~~~~~~~v~~~d~~~~~~~~~~ 197 (343)
......+++||+++.+.+.+.
T Consensus 182 ---~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 182 ---NIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred ---CccccceEEEecCCCeeEECC
Confidence 000124789999988877654
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=88.56 E-value=16 Score=33.31 Aligned_cols=155 Identities=16% Similarity=0.193 Sum_probs=85.0
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEc--CCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKA--ANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA 113 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~ 113 (343)
.+..+.+.++++++++++...+.+.++. +....+.... .....++..+.+..++-.+.++
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~------------------~~v~~~~~ai~~~~~~~sv~v~ 125 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV------------------SCVPKRPTAISFIREDTSVLVA 125 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE------------------eecccCcceeeeeeccceEEEE
Confidence 3566667778887777776666444443 3221221110 0112246667777656677777
Q ss_pred eCCCeEEEEeCCC---CeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC
Q 019290 114 DAYFGLMVVGPNG---GQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK 190 (343)
Q Consensus 114 ~~~~gi~~~d~~~---~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 190 (343)
+....++.++... +.-..+. + ....+.++++.+ |+.+.++.... ..-+|.+|. .+
T Consensus 126 dkagD~~~~di~s~~~~~~~~~l----G-hvSml~dVavS~-D~~~IitaDRD---------------EkIRvs~yp-a~ 183 (390)
T KOG3914|consen 126 DKAGDVYSFDILSADSGRCEPIL----G-HVSMLLDVAVSP-DDQFIITADRD---------------EKIRVSRYP-AT 183 (390)
T ss_pred eecCCceeeeeecccccCcchhh----h-hhhhhheeeecC-CCCEEEEecCC---------------ceEEEEecC-cc
Confidence 6443366666532 2211111 1 235688999999 57766654321 123455553 22
Q ss_pred CceEEee-cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 191 KNVTVMY-NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 191 ~~~~~~~-~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
..++.+. .+-.+...+++.++ ++.++..+++.|+.|++..
T Consensus 184 f~IesfclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 184 FVIESFCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred cchhhhccccHhheeeeeeccC--ceeeecCCCCcEEEEeccc
Confidence 3333222 22344677777643 3567888899999999875
No 303
>PLN02193 nitrile-specifier protein
Probab=88.50 E-value=24 Score=33.82 Aligned_cols=116 Identities=8% Similarity=0.012 Sum_probs=58.8
Q ss_pred eeEEEeCCCCeEEEEeCC--------CeEEEEeCCCCeEEEcccccCCCCccC-cceeEEeCCCCeEEEEeCCccccccc
Q 019290 99 LGIKFNPVTCDLYIADAY--------FGLMVVGPNGGQAQQLASSAGGIPFRF-TNDLDIDPNTGIVYFTDSSIYFQRRQ 169 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~~~--------~gi~~~d~~~~~~~~~~~~~~~~~~~~-~~~i~~d~~dg~l~v~~~~~~~~~~~ 169 (343)
++.+.. ++.||+.... +.+++||+++.+++.+......+.... -..++.. ++.||+--...
T Consensus 169 h~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~------ 238 (470)
T PLN02193 169 HGIAQV--GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRD------ 238 (470)
T ss_pred cEEEEE--CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCC------
Confidence 344444 4678775321 238899999888776532211111111 1223333 37888843210
Q ss_pred ceeeeeecCCCceEEEEeCCCCceEEeecCC--CCc---ceeEEecCCCEEEEEEcC-----CCeEEEEEccC
Q 019290 170 YFMSIATGDRSGRLLKYDPLKKNVTVMYNGL--SFP---NGVALSNNNSFLLLAESA-----TLKILRFWLQG 232 (343)
Q Consensus 170 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~---~~i~~~~d~~~lyv~~~~-----~~~i~~~~~~~ 232 (343)
.......+++||+.+.+++.+.... ..+ ..++. .++.+|+..-. ...+++|++..
T Consensus 239 ------~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~~~~iYv~GG~~~~~~~~~~~~yd~~t 303 (470)
T PLN02193 239 ------ASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--DEENVYVFGGVSATARLKTLDSYNIVD 303 (470)
T ss_pred ------CCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--ECCEEEEECCCCCCCCcceEEEEECCC
Confidence 0011346999999988877654321 111 12222 23457776422 13467777654
No 304
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=88.44 E-value=5.7 Score=33.75 Aligned_cols=143 Identities=18% Similarity=0.192 Sum_probs=63.1
Q ss_pred eEEEeCCCCeEEEEeCCCeEEEEeCC-CCeEEEccc--ccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290 100 GIKFNPVTCDLYIADAYFGLMVVGPN-GGQAQQLAS--SAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 100 gi~~~~~~~~l~v~~~~~gi~~~d~~-~~~~~~~~~--~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
-|++.+ ++.||... ..++++..+. .+.-+.... ......-.....|.+|+ .|-||..+.
T Consensus 38 ~i~~~P-~g~lY~I~-~~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~-~G~LYaV~~--------------- 99 (229)
T PF14517_consen 38 DIAAGP-NGRLYAIR-NDGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDP-TGVLYAVTP--------------- 99 (229)
T ss_dssp EEEE-T-TS-EEEEE-TTEEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-T-TS-EEEEET---------------
T ss_pred eEEEcC-CceEEEEE-CCceEEecCCccCcccccccCcccccCcccceeEEEecC-CccEEEecc---------------
Confidence 467787 89999985 5678888322 121111100 00011123456899999 499997553
Q ss_pred cCCCceEEEEeCCCCce--------EEe-ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEE-ccCcc-c-cccceeeec
Q 019290 177 GDRSGRLLKYDPLKKNV--------TVM-YNGLSFPNGVALSNNNSFLLLAESATLKILRFW-LQGER-T-TYTPQLFAE 244 (343)
Q Consensus 177 ~~~~~~v~~~d~~~~~~--------~~~-~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~-~~~~~-~-~~~~~~~~~ 244 (343)
.+.|+|..+.+..- +.+ ..+-.....+-++++| .||..+. ++++++.. +.+.. . +....++..
T Consensus 100 ---~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~G-vLY~i~~-dg~~~~~~~p~~~~~~W~~~s~~v~~ 174 (229)
T PF14517_consen 100 ---DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNG-VLYAITP-DGRLYRRYRPDGGSDRWLSGSGLVGG 174 (229)
T ss_dssp ---T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS--EEEEET-TE-EEEE---SSTT--HHHH-EEEES
T ss_pred ---ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCc-cEEEEcC-CCceEEeCCCCCCCCccccccceecc
Confidence 45688876532211 122 2223335556666766 4888774 55788873 22211 0 011111111
Q ss_pred -CCCCCCceeeCCCCCEEEEec
Q 019290 245 -MPRFPDNIKSDSKGEFWIAMN 265 (343)
Q Consensus 245 -~~~~p~~i~~d~~G~lwi~~~ 265 (343)
.-..+..|...++|+||....
T Consensus 175 ~gw~~~~~i~~~~~g~L~~V~~ 196 (229)
T PF14517_consen 175 GGWDSFHFIFFSPDGNLWAVKS 196 (229)
T ss_dssp SSGGGEEEEEE-TTS-EEEE-E
T ss_pred CCcccceEEeeCCCCcEEEEec
Confidence 111233466788899998833
No 305
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=88.41 E-value=6.1 Score=38.95 Aligned_cols=114 Identities=14% Similarity=0.085 Sum_probs=73.4
Q ss_pred eeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecC
Q 019290 99 LGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGD 178 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~ 178 (343)
..|.+++..+.+..+.-...|..||.+.|+.+..+....+.. ..+-.+..|| ..+|++++-.
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e-G~lIKv~lDP--SgiY~atScs--------------- 661 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE-GDLIKVILDP--SGIYLATSCS--------------- 661 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCC-CceEEEEECC--CccEEEEeec---------------
Confidence 456666644444444333559999999888776654433322 3456788898 4677776531
Q ss_pred CCceEEEEeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 179 RSGRLLKYDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 179 ~~~~v~~~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
...+..||--+|+.. +.........|+.|.+|=++|+-+ +.+++|++|.+.-
T Consensus 662 -dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISv-sgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 662 -DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISV-SGDGCIFVWKLPL 714 (1080)
T ss_pred -CCceEEEEeccchhhhhhcCcchheeeeeecccchhheee-cCCceEEEEECch
Confidence 345777777667642 223334557899999998877544 5789999998753
No 306
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=88.31 E-value=18 Score=32.29 Aligned_cols=96 Identities=8% Similarity=-0.014 Sum_probs=52.9
Q ss_pred CceEEEcCCCCeeEEEe------------------cCCEEEEEEcCCCCeEEeeecCCCccccccC-------C-CCCcc
Q 019290 37 PESLAFDCNGEGPYVGV------------------SDGRILKWKAANSGWTEFATTAPHRAREICD-------G-STNTT 90 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~------------------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~ 90 (343)
.+.+.+.++|+.|++.. .++.++.+|++|+++..-.....+...+.+. + .....
T Consensus 59 ~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~ 138 (299)
T PF14269_consen 59 HHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSS 138 (299)
T ss_pred ccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCC
Confidence 56778888899665221 2345778888877633111111111111110 0 00011
Q ss_pred cCCCcCCeeeEEEeCCCCeEEEEeCC-CeEEEEeCCCCeEEEcc
Q 019290 91 LEPLCGRPLGIKFNPVTCDLYIADAY-FGLMVVGPNGGQAQQLA 133 (343)
Q Consensus 91 ~~~~~~~p~gi~~~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~ 133 (343)
........+++..++ +|.++|+... ..|+++++++|++....
T Consensus 139 ~~~D~~HiNsV~~~~-~G~yLiS~R~~~~i~~I~~~tG~I~W~l 181 (299)
T PF14269_consen 139 FPWDYFHINSVDKDD-DGDYLISSRNTSTIYKIDPSTGKIIWRL 181 (299)
T ss_pred CCCCccEeeeeeecC-CccEEEEecccCEEEEEECCCCcEEEEe
Confidence 112233467788887 7777777543 45999999999987654
No 307
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=88.07 E-value=23 Score=33.10 Aligned_cols=155 Identities=10% Similarity=0.086 Sum_probs=73.2
Q ss_pred eEEEeCCCCeEEEE-eC-CC---eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeee
Q 019290 100 GIKFNPVTCDLYIA-DA-YF---GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI 174 (343)
Q Consensus 100 gi~~~~~~~~l~v~-~~-~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~ 174 (343)
+..++++++.+.++ +. ++ .++.+|.++|+...- .... .....+...+++..+|.+.........
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~---~~~~~~~W~~d~~~~~y~~~~~~~~~~------ 196 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIEN---PKFSSVSWSDDGKGFFYTRFDEDQRTS------ 196 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEE---EESEEEEECTTSSEEEEEECSTTTSS-------
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--cccc---cccceEEEeCCCCEEEEEEeCcccccc------
Confidence 46777744555554 22 22 288999999865432 1111 112237777732344554432100000
Q ss_pred eecCCCceEEEEeCCCCceE--EeecCCCC---cceeEEecCCCEEEEEEcC--C-CeEEEEEccCc--cccccceeeec
Q 019290 175 ATGDRSGRLLKYDPLKKNVT--VMYNGLSF---PNGVALSNNNSFLLLAESA--T-LKILRFWLQGE--RTTYTPQLFAE 244 (343)
Q Consensus 175 ~~~~~~~~v~~~d~~~~~~~--~~~~~~~~---~~~i~~~~d~~~lyv~~~~--~-~~i~~~~~~~~--~~~~~~~~~~~ 244 (343)
.......|+++...+..-. .+...... ..++..++|++.+++.... . ..++.+++... .. ...+.+..
T Consensus 197 -~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~-~~~~~l~~ 274 (414)
T PF02897_consen 197 -DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPD-AKPKLLSP 274 (414)
T ss_dssp -CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS--SEEEEEE
T ss_pred -cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCc-CCcEEEeC
Confidence 0001345888877655432 33333222 3467788999988875433 2 46888887652 11 23333332
Q ss_pred -CCCCCCceeeCCCCCEEEEeccCC
Q 019290 245 -MPRFPDNIKSDSKGEFWIAMNSAR 268 (343)
Q Consensus 245 -~~~~p~~i~~d~~G~lwi~~~~~~ 268 (343)
..+ ....+....+.+|+.++..+
T Consensus 275 ~~~~-~~~~v~~~~~~~yi~Tn~~a 298 (414)
T PF02897_consen 275 REDG-VEYYVDHHGDRLYILTNDDA 298 (414)
T ss_dssp SSSS--EEEEEEETTEEEEEE-TT-
T ss_pred CCCc-eEEEEEccCCEEEEeeCCCC
Confidence 221 11112223557888877533
No 308
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=87.62 E-value=22 Score=32.34 Aligned_cols=32 Identities=16% Similarity=0.083 Sum_probs=21.8
Q ss_pred eEEEeCCCCeEEEEeCC------------CeEEEEeCCCCeEEEcc
Q 019290 100 GIKFNPVTCDLYIADAY------------FGLMVVGPNGGQAQQLA 133 (343)
Q Consensus 100 gi~~~~~~~~l~v~~~~------------~gi~~~d~~~~~~~~~~ 133 (343)
+++.. ++.||+.... +.+++||+.+.+++.+.
T Consensus 58 ~~~~~--~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~ 101 (346)
T TIGR03547 58 VAAAI--DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLD 101 (346)
T ss_pred eEEEE--CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCC
Confidence 34444 5788887421 23789999998888764
No 309
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.35 E-value=21 Score=31.80 Aligned_cols=154 Identities=9% Similarity=-0.005 Sum_probs=79.9
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY 116 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~ 116 (343)
..+|++-|.|++-.+-..++.+..||.-+++...+. .....+.-+.+++++..+++. ..
T Consensus 130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~--------------------~L~~~at~v~w~~~Gd~F~v~-~~ 188 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL--------------------NLKNKATLVSWSPQGDHFVVS-GR 188 (362)
T ss_pred cceeEecCCCceEEEEcCCceeeeehhhcCccceee--------------------ccCCcceeeEEcCCCCEEEEE-ec
Confidence 556666666663333334455555665444322221 111234457777744456665 45
Q ss_pred CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce-EE
Q 019290 117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV-TV 195 (343)
Q Consensus 117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~ 195 (343)
++|-.+..++.++-..... . ..+..+.+.. .+.+.++-. ...|..+|.+++.. ..
T Consensus 189 ~~i~i~q~d~A~v~~~i~~--~---~r~l~~~~l~-~~~L~vG~d------------------~~~i~~~D~ds~~~~~~ 244 (362)
T KOG0294|consen 189 NKIDIYQLDNASVFREIEN--P---KRILCATFLD-GSELLVGGD------------------NEWISLKDTDSDTPLTE 244 (362)
T ss_pred cEEEEEecccHhHhhhhhc--c---ccceeeeecC-CceEEEecC------------------CceEEEeccCCCcccee
Confidence 6766666654332211111 0 1244455555 367777433 23466667654332 22
Q ss_pred eecCCCCcceeEE-ecCCCEEEEEEcCCCeEEEEEccCccc
Q 019290 196 MYNGLSFPNGVAL-SNNNSFLLLAESATLKILRFWLQGERT 235 (343)
Q Consensus 196 ~~~~~~~~~~i~~-~~d~~~lyv~~~~~~~i~~~~~~~~~~ 235 (343)
+...-.+..++++ ......+.++.+.+|.|.+|+++-+.+
T Consensus 245 ~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 245 FLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred eecchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence 2333344566663 333345677777789999999876433
No 310
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=87.02 E-value=18 Score=30.88 Aligned_cols=114 Identities=19% Similarity=0.303 Sum_probs=66.8
Q ss_pred CeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEc--ccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeee
Q 019290 97 RPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQL--ASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI 174 (343)
Q Consensus 97 ~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~--~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~ 174 (343)
...||.+.+.++.||-.....+||.+|+.+|..+.+ ........ ....++.+.|.-++|-+...
T Consensus 28 ~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~-g~~~gvDFNP~aDRlRvvs~------------- 93 (236)
T PF14339_consen 28 SLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALS-GTAFGVDFNPAADRLRVVSN------------- 93 (236)
T ss_pred eEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeeccccccccc-CceEEEecCcccCcEEEEcc-------------
Confidence 457999999889999775567799999999987766 22211111 11344455554356655321
Q ss_pred eecCCCceEEEEeCCCCceEEeecCC----------CCc--ceeEEecC------CCEEEEEEcCCCeEEEEE
Q 019290 175 ATGDRSGRLLKYDPLKKNVTVMYNGL----------SFP--NGVALSNN------NSFLLLAESATLKILRFW 229 (343)
Q Consensus 175 ~~~~~~~~v~~~d~~~~~~~~~~~~~----------~~~--~~i~~~~d------~~~lyv~~~~~~~i~~~~ 229 (343)
.+.=+|++++++.+......+ ..| .+.++... .-.||-.+...+.|++-.
T Consensus 94 -----~GqNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ 161 (236)
T PF14339_consen 94 -----TGQNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQN 161 (236)
T ss_pred -----CCcEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEec
Confidence 456788888888743222111 112 23344322 345777777777776653
No 311
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=86.99 E-value=36 Score=34.27 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=41.2
Q ss_pred CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290 201 SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 201 ~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
...++++++.+|..||-.. .++-+.+|.+++ ++.+.+..+.+-...+++.+|+.++.....
T Consensus 252 ~~V~~L~fS~~G~~LlSGG-~E~VLv~Wq~~T----~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLSGG-REGVLVLWQLET----GKKQFLPRLGSPILHIVVSPDSDLYSLVLE 312 (792)
T ss_pred cccceeEEecCCceEeecc-cceEEEEEeecC----CCcccccccCCeeEEEEEcCCCCeEEEEec
Confidence 4578999999999887554 467788888776 333333335544566788888877665443
No 312
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=86.84 E-value=20 Score=31.04 Aligned_cols=96 Identities=18% Similarity=0.240 Sum_probs=51.3
Q ss_pred EEEEeCCCCeEEEccccc--CCCCccCcceeEE--eCCCCeEEEEeCCcccccccceeeeeecCCCceEEE---EeCCCC
Q 019290 119 LMVVGPNGGQAQQLASSA--GGIPFRFTNDLDI--DPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK---YDPLKK 191 (343)
Q Consensus 119 i~~~d~~~~~~~~~~~~~--~~~~~~~~~~i~~--d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~---~d~~~~ 191 (343)
++.+|++.+..+.+.... .......+.+++. ++..|.+|+=...+ .|.+.. .|...|
T Consensus 128 ~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~----------------qG~~~Qy~l~d~gnG 191 (364)
T COG4247 128 FYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRR----------------QGDIAQYKLIDQGNG 191 (364)
T ss_pred EEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecC----------------CCceeEEEEEecCCc
Confidence 788899888777665442 1222345666664 44336666522211 122221 232223
Q ss_pred ce-----EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 192 NV-----TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 192 ~~-----~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
++ +.+. -.....|+..+..-..||+++. +-.||+|..+.
T Consensus 192 kv~~k~vR~fk-~~tQTEG~VaDdEtG~LYIaeE-dvaiWK~~Aep 235 (364)
T COG4247 192 KVGTKLVRQFK-IPTQTEGMVADDETGFLYIAEE-DVAIWKYEAEP 235 (364)
T ss_pred eEcceeeEeee-cCCcccceeeccccceEEEeec-cceeeecccCC
Confidence 22 1111 1123567777766678999975 56899998653
No 313
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=86.57 E-value=1.1 Score=26.23 Aligned_cols=31 Identities=29% Similarity=0.271 Sum_probs=22.2
Q ss_pred ccccccCCCC-CCCceEEEcCCCCeeEEEecC
Q 019290 25 SYQQLQLPGV-VGPESLAFDCNGEGPYVGVSD 55 (343)
Q Consensus 25 ~~~~~~~~~~-~~p~~l~~d~~g~~l~~~~~~ 55 (343)
|.+++..+.. ..+.+|++|++|+++.++..+
T Consensus 2 w~~~lG~~~~~~~~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 2 WSTQLGGPGAQDYGNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred cEEEeCCCCCceeEEEEEECCCCCEEEEEeec
Confidence 5677776743 459999999999955555443
No 314
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=86.11 E-value=14 Score=33.76 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=63.7
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
+--+|+++...+.+|.+...+++.+-|..+++-..+.... ...+.+.++..+|.++.+.+. +
T Consensus 107 NIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~-----------------~~~~~VY~m~~~P~DN~~~~~-t 168 (609)
T KOG4227|consen 107 NIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN-----------------NNRGDVYHMDQHPTDNTLIVV-T 168 (609)
T ss_pred ceEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc-----------------CcccceeecccCCCCceEEEE-e
Confidence 3458999999888999999999999888776544433221 122346788888854444444 4
Q ss_pred CCe-EEEEeCCCCe--EEEcccccCCCCccCcceeEEeCCCCeEEEEeCC
Q 019290 116 YFG-LMVVGPNGGQ--AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSS 162 (343)
Q Consensus 116 ~~g-i~~~d~~~~~--~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~ 162 (343)
..+ |..+|.+..+ ...+.....+ ...+.+.+.|..-.|..++..
T Consensus 169 ~~~~V~~~D~Rd~~~~~~~~~~AN~~---~~F~t~~F~P~~P~Li~~~~~ 215 (609)
T KOG4227|consen 169 RAKLVSFIDNRDRQNPISLVLPANSG---KNFYTAEFHPETPALILVNSE 215 (609)
T ss_pred cCceEEEEeccCCCCCCceeeecCCC---ccceeeeecCCCceeEEeccc
Confidence 555 7777776443 1111111111 235667777754456555543
No 315
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=86.11 E-value=20 Score=32.69 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=73.3
Q ss_pred eeeEEEeC-CCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290 98 PLGIKFNP-VTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 98 p~gi~~~~-~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
-.+|.+++ ..|+|.-+|...+|+...+.+|.++.-.....+ ....+.++...|....++++.+-
T Consensus 214 Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~-------------- 278 (440)
T KOG0302|consen 214 GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSC-------------- 278 (440)
T ss_pred ceeeecccccccccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeec--------------
Confidence 34566655 246688777777888888888876643222122 23567888888866778886653
Q ss_pred cCCCceEEEEeCCCCceE-Ee--ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 177 GDRSGRLLKYDPLKKNVT-VM--YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 177 ~~~~~~v~~~d~~~~~~~-~~--~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.+.|-.+|...+..+ .+ .......|.|.+..+.. +..+...+|.+.+||+..
T Consensus 279 ---DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~ 333 (440)
T KOG0302|consen 279 ---DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQ 333 (440)
T ss_pred ---CceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhh
Confidence 445666666544211 11 22234567777776554 677777889999999864
No 316
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=85.93 E-value=37 Score=33.31 Aligned_cols=50 Identities=8% Similarity=0.027 Sum_probs=33.1
Q ss_pred eEEEEeCCCCce-EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 182 RLLKYDPLKKNV-TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 182 ~v~~~d~~~~~~-~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.|-.||..+.+. ..+...-....+++++++|+.+ .+-..+++|.+|+...
T Consensus 701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~-AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRI-ATVCKDGTLRVYEPRS 751 (1012)
T ss_pred eeeeeehhhhhhhheeccCcCceeEEEECCCCcce-eeeecCceEEEeCCCC
Confidence 455666654432 2344444567899999999854 4445689999998654
No 317
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=84.76 E-value=28 Score=30.85 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=57.6
Q ss_pred cccccCCCCC--CCceEEEcCC-CCeeEEEecCCEEEEEEcCCC-CeEEeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290 26 YQQLQLPGVV--GPESLAFDCN-GEGPYVGVSDGRILKWKAANS-GWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI 101 (343)
Q Consensus 26 ~~~~~~~~~~--~p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi 101 (343)
.+.+++|.-+ +...|+++|. ..++.++..++.|..|+.+.. .... +......+.+..+
T Consensus 17 ~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v 78 (347)
T KOG0647|consen 17 NKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDV 78 (347)
T ss_pred ccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEE
Confidence 4556665422 4668999994 554457889998888876542 1100 1111223345678
Q ss_pred EEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcc
Q 019290 102 KFNPVTCDLYIADAYFGLMVVGPNGGQAQQLA 133 (343)
Q Consensus 102 ~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~ 133 (343)
+..+++..+|.+.....+-.+|+.++++..+.
T Consensus 79 ~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~ 110 (347)
T KOG0647|consen 79 CWSDDGSKVFSGGCDKQAKLWDLASGQVSQVA 110 (347)
T ss_pred EEccCCceEEeeccCCceEEEEccCCCeeeee
Confidence 88875556777765555899999999887663
No 318
>KOG4328 consensus WD40 protein [Function unknown]
Probab=84.67 E-value=35 Score=31.93 Aligned_cols=153 Identities=22% Similarity=0.267 Sum_probs=84.7
Q ss_pred ceEEEcCCCC--eeEEEecCCEEEEEEcCCCC-----eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC-Ce
Q 019290 38 ESLAFDCNGE--GPYVGVSDGRILKWKAANSG-----WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT-CD 109 (343)
Q Consensus 38 ~~l~~d~~g~--~l~~~~~~g~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-~~ 109 (343)
.++++-|..+ ++-++...|+|..||..+++ +..+. ...+.+.+|.+.+-+ ..
T Consensus 190 t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~--------------------~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 190 TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT--------------------PHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec--------------------cCCccccceEecCCChhh
Confidence 4666777544 33356667888888875321 11111 222334567887622 35
Q ss_pred EEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290 110 LYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP 188 (343)
Q Consensus 110 l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 188 (343)
+|.+ ...| |...|.++.....+...... ..+..++.+..++..+++++. .|..-.+|.
T Consensus 250 i~ss-SyDGtiR~~D~~~~i~e~v~s~~~d--~~~fs~~d~~~e~~~vl~~~~------------------~G~f~~iD~ 308 (498)
T KOG4328|consen 250 IYSS-SYDGTIRLQDFEGNISEEVLSLDTD--NIWFSSLDFSAESRSVLFGDN------------------VGNFNVIDL 308 (498)
T ss_pred eeee-ccCceeeeeeecchhhHHHhhcCcc--ceeeeeccccCCCccEEEeec------------------ccceEEEEe
Confidence 7766 4666 77778887665554433211 122333444433355555443 233334444
Q ss_pred CCCc--eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290 189 LKKN--VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ 231 (343)
Q Consensus 189 ~~~~--~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~ 231 (343)
.++. ...+.-.-....++++.|-...+..+...++....||+.
T Consensus 309 R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 309 RTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred ecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehh
Confidence 3332 222221223678899999888788888888888889875
No 319
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=83.38 E-value=33 Score=30.66 Aligned_cols=178 Identities=13% Similarity=0.055 Sum_probs=88.5
Q ss_pred CCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe-CCCeEEEEe
Q 019290 45 NGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD-AYFGLMVVG 123 (343)
Q Consensus 45 ~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~-~~~gi~~~d 123 (343)
.+..+.+...+..|+.|+..++.+..+- .....-+..+++| +|++..+. ....+..+.
T Consensus 198 ~~k~imsas~dt~i~lw~lkGq~L~~id--------------------tnq~~n~~aavSP-~GRFia~~gFTpDVkVwE 256 (420)
T KOG2096|consen 198 NAKYIMSASLDTKICLWDLKGQLLQSID--------------------TNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWE 256 (420)
T ss_pred CceEEEEecCCCcEEEEecCCceeeeec--------------------cccccccceeeCC-CCcEEEEecCCCCceEEE
Confidence 3443445567778999998876555442 1111234566777 66655442 222233322
Q ss_pred ---CCCCeEEEcccc--cCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC--------CC
Q 019290 124 ---PNGGQAQQLASS--AGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP--------LK 190 (343)
Q Consensus 124 ---~~~~~~~~~~~~--~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~--------~~ 190 (343)
.+.|.++..... ..+. ...+..+++.+ +.+-.++.+. .|..-.||. +.
T Consensus 257 ~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn-~S~r~vtvSk-----------------DG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 257 PIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSN-SSTRAVTVSK-----------------DGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred EEeccCcchhhhhhhheeccc-hhheeeeeeCC-CcceeEEEec-----------------CCcEEEeeccceEecCCCc
Confidence 244555544221 1111 13456667776 3555554432 122222221 11
Q ss_pred CceE----EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290 191 KNVT----VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 191 ~~~~----~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
+-++ .+......|.-+.++|.|+.|-++ .+..|-.|.........+.+.+ ..+-...|..+++|+..+++..
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s--~gs~l~~~~se~g~~~~~~e~~--h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVS--FGSDLKVFASEDGKDYPELEDI--HSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEee--cCCceEEEEcccCccchhHHHh--hcCceeeEEecCCCcEEeeecc
Confidence 1111 112234457788999999876554 3556766654321110111111 2233567888999988887765
No 320
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=83.19 E-value=24 Score=32.72 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=66.7
Q ss_pred eeEEEeCC-CCeEEEEeCCCeEEEEeCCCCeEE--Ec-ccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeee
Q 019290 99 LGIKFNPV-TCDLYIADAYFGLMVVGPNGGQAQ--QL-ASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI 174 (343)
Q Consensus 99 ~gi~~~~~-~~~l~v~~~~~gi~~~d~~~~~~~--~~-~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~ 174 (343)
.|++..+. .+.|.-+.....+..+|....... .+ ...........++++++.+.+..+|.+...
T Consensus 181 ~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d------------ 248 (422)
T KOG0264|consen 181 YGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD------------ 248 (422)
T ss_pred cccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC------------
Confidence 34555542 234444433344777766432211 01 011111112457788877755566665433
Q ss_pred eecCCCceEEEEeCCCC--ceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 175 ATGDRSGRLLKYDPLKK--NVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 175 ~~~~~~~~v~~~d~~~~--~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.+.+..+|..++ +.. .........+.++|.|-+..+..+.+.+++|..||+..
T Consensus 249 -----d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 249 -----DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN 304 (422)
T ss_pred -----CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence 456788887632 221 12223455789999998888999988899999999753
No 321
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=82.95 E-value=34 Score=30.49 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=48.6
Q ss_pred cCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE-EeCCCCceEE-eecCC--CCcceeEEecCCCEEEE
Q 019290 142 RFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK-YDPLKKNVTV-MYNGL--SFPNGVALSNNNSFLLL 217 (343)
Q Consensus 142 ~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~-~d~~~~~~~~-~~~~~--~~~~~i~~~~d~~~lyv 217 (343)
..+..+++.. +|.+..+.+. .|.+.| ||..+|.... +-.+. .....++|+++...|-+
T Consensus 182 s~Iacv~Ln~-~Gt~vATaSt-----------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 182 SDIACVALNL-QGTLVATAST-----------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred CceeEEEEcC-CccEEEEecc-----------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence 3466677777 5888886654 566555 5877676533 22222 23578999999986655
Q ss_pred EEcCCCeEEEEEccC
Q 019290 218 AESATLKILRFWLQG 232 (343)
Q Consensus 218 ~~~~~~~i~~~~~~~ 232 (343)
+ +..++|..|.+..
T Consensus 244 s-SdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 244 S-SDKGTLHIFSLRD 257 (346)
T ss_pred E-cCCCeEEEEEeec
Confidence 5 5689999999875
No 322
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=82.57 E-value=12 Score=36.14 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=65.3
Q ss_pred CCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeE-EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeee
Q 019290 96 GRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQA-QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI 174 (343)
Q Consensus 96 ~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~ 174 (343)
+.+....|++..-.++|+ +.+.|..||+-.+.+ +.+. .+ ..++.++++++.+++|+++..
T Consensus 567 G~vq~v~FHPs~p~lfVa-Tq~~vRiYdL~kqelvKkL~---tg--~kwiS~msihp~GDnli~gs~------------- 627 (733)
T KOG0650|consen 567 GLVQRVKFHPSKPYLFVA-TQRSVRIYDLSKQELVKKLL---TG--SKWISSMSIHPNGDNLILGSY------------- 627 (733)
T ss_pred CceeEEEecCCCceEEEE-eccceEEEehhHHHHHHHHh---cC--CeeeeeeeecCCCCeEEEecC-------------
Confidence 346678889867788998 578899999864332 1221 11 246788999986556777543
Q ss_pred eecCCCceEEEEeCCC--CceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEE
Q 019290 175 ATGDRSGRLLKYDPLK--KNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFW 229 (343)
Q Consensus 175 ~~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~ 229 (343)
..++.-||.+- +-.+.+--.-.....+++++.= -|+++.+..+.+.+|.
T Consensus 628 -----d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 628 -----DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFH 678 (733)
T ss_pred -----CCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEe
Confidence 34566677642 2222221111223456666432 3677777677777776
No 323
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=82.55 E-value=56 Score=32.67 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=25.4
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANS 66 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~ 66 (343)
+-++|++.|+|.+|-.+...|.|..|+....
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l 491 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQEL 491 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhh
Confidence 4679999999998878888888888887553
No 324
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.50 E-value=48 Score=31.87 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=21.6
Q ss_pred CeeeEEEeCCCCeEEEEeC--CCeEEEEeCCCCeEEEc
Q 019290 97 RPLGIKFNPVTCDLYIADA--YFGLMVVGPNGGQAQQL 132 (343)
Q Consensus 97 ~p~gi~~~~~~~~l~v~~~--~~gi~~~d~~~~~~~~~ 132 (343)
.|+-+.+...+.+|.+-+. .++|+.+|.+.|++..-
T Consensus 334 ~P~K~mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeE 371 (644)
T KOG2395|consen 334 DPHKAMLHRADSNLILMDGGEQDKLYKLDIERGKIVEE 371 (644)
T ss_pred CcchhhhhccccceEeeCCCCcCcceeeecccceeeeE
Confidence 3444333333445544433 36799999999987543
No 325
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=81.46 E-value=6.3 Score=36.73 Aligned_cols=110 Identities=16% Similarity=0.202 Sum_probs=62.7
Q ss_pred eeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290 99 LGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG 177 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~ 177 (343)
.-+-|-| -..|+++....| +...|..+|+...-.....+ ...-+...|. +-+.- . +
T Consensus 213 ~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G----~~~vm~qNP~-NaVih-~----------------G 269 (545)
T KOG1272|consen 213 ARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG----RTDVMKQNPY-NAVIH-L----------------G 269 (545)
T ss_pred hhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCC----ccchhhcCCc-cceEE-E----------------c
Confidence 3445555 556666655667 55567777764322111111 1223344453 22221 1 2
Q ss_pred CCCceEEEEeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 178 DRSGRLLKYDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 178 ~~~~~v~~~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
...|.|..|.|...+.- .+.+.....++++++++|.++ ++.-.+..+-+||+..
T Consensus 270 hsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YM-aTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 270 HSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYM-ATTGLDRKVKIWDLRN 324 (545)
T ss_pred CCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEE-eecccccceeEeeecc
Confidence 23577888888765532 234566778999999988744 4444578899999754
No 326
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=81.40 E-value=41 Score=30.32 Aligned_cols=185 Identities=10% Similarity=-0.009 Sum_probs=94.8
Q ss_pred CeeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeC--CCCeEEEEeCCCeEEEEe
Q 019290 47 EGPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNP--VTCDLYIADAYFGLMVVG 123 (343)
Q Consensus 47 ~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~--~~~~l~v~~~~~gi~~~d 123 (343)
+.+-++-.+|.+..||+.++. ..+|.. .....+++.|.. ....++.+.+..-|..+|
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~--------------------~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD 100 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG--------------------PPATTNGVRFISCDSPHGVISCSSDGTVRLWD 100 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecC--------------------CCCcccceEEecCCCCCeeEEeccCCeEEEEE
Confidence 446677789999999998743 223321 112234666654 234677774333488899
Q ss_pred CCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce--EEe-ecCC
Q 019290 124 PNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV--TVM-YNGL 200 (343)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~-~~~~ 200 (343)
.++..-....... ..+....+.++..-+ +++.....-. -.....|+.||....+. ..+ ....
T Consensus 101 ~Rs~~e~a~~~~~-~~~~~~f~~ld~nck-~~ii~~GtE~-------------~~s~A~v~lwDvR~~qq~l~~~~eSH~ 165 (376)
T KOG1188|consen 101 IRSQAESARISWT-QQSGTPFICLDLNCK-KNIIACGTEL-------------TRSDASVVLWDVRSEQQLLRQLNESHN 165 (376)
T ss_pred eecchhhhheecc-CCCCCcceEeeccCc-CCeEEecccc-------------ccCceEEEEEEeccccchhhhhhhhcc
Confidence 8754322211111 111112233333323 5555533210 01123577777642221 111 1223
Q ss_pred CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCC--CEEEEecc
Q 019290 201 SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKG--EFWIAMNS 266 (343)
Q Consensus 201 ~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G--~lwi~~~~ 266 (343)
....-+.|+|....+.++.+.+|-+..||+..+..-.......+......-+..-.++ +||+-++.
T Consensus 166 DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~ 233 (376)
T KOG1188|consen 166 DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHM 233 (376)
T ss_pred CcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEcc
Confidence 3456788999887888999999999999987642201111111111112223344455 78888776
No 327
>PLN02193 nitrile-specifier protein
Probab=80.95 E-value=54 Score=31.42 Aligned_cols=143 Identities=12% Similarity=0.064 Sum_probs=75.0
Q ss_pred EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCC-eeeEEEeCCCCeEEEEeCC------CeEEEEeCCCCeE
Q 019290 57 RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGR-PLGIKFNPVTCDLYIADAY------FGLMVVGPNGGQA 129 (343)
Q Consensus 57 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gi~~~~~~~~l~v~~~~------~gi~~~d~~~~~~ 129 (343)
.+++||+.+.+|......... +...+ -+.++.. ++.||+.... +.++++|+.+.++
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~---------------P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~t~~W 256 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDV---------------PHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTTTNEW 256 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCC---------------CCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECCCCEE
Confidence 488999999888764311100 00001 1223333 5678876321 3589999999888
Q ss_pred EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCC-----CCcc
Q 019290 130 QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGL-----SFPN 204 (343)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-----~~~~ 204 (343)
+.+......+....-+.++... +.||+--.... ......+++||+.+.+++.+.... ..-.
T Consensus 257 ~~l~~~~~~P~~R~~h~~~~~~--~~iYv~GG~~~------------~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~ 322 (470)
T PLN02193 257 KLLTPVEEGPTPRSFHSMAADE--ENVYVFGGVSA------------TARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA 322 (470)
T ss_pred EEcCcCCCCCCCccceEEEEEC--CEEEEECCCCC------------CCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc
Confidence 8765432111112223444443 78888432100 001235889999888776553211 1111
Q ss_pred eeEEecCCCEEEEEEcC----CCeEEEEEccC
Q 019290 205 GVALSNNNSFLLLAESA----TLKILRFWLQG 232 (343)
Q Consensus 205 ~i~~~~d~~~lyv~~~~----~~~i~~~~~~~ 232 (343)
.+++ -+++ +|+..-. .+.+++||+..
T Consensus 323 ~~~~-~~gk-iyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 323 GLEV-VQGK-VWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred EEEE-ECCc-EEEEECCCCCccCceEEEECCC
Confidence 2333 2444 6664321 25689999875
No 328
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.71 E-value=37 Score=29.40 Aligned_cols=167 Identities=15% Similarity=0.133 Sum_probs=83.4
Q ss_pred cccCCCCCCCceEEEcC--CCCeeEEE------ecCCEEEEEEcC-CCCeEEeeecCCCccccccCCCCCcccCCCcCCe
Q 019290 28 QLQLPGVVGPESLAFDC--NGEGPYVG------VSDGRILKWKAA-NSGWTEFATTAPHRAREICDGSTNTTLEPLCGRP 98 (343)
Q Consensus 28 ~~~~~~~~~p~~l~~d~--~g~~l~~~------~~~g~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 98 (343)
.+..|++ +.+++.++| ++++..++ ..+|+|+..+.+ .+.+.++..- ......
T Consensus 3 ~~~tpgf-~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~------------------d~~D~L 63 (311)
T KOG0277|consen 3 THTTPGF-HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY------------------DTEDGL 63 (311)
T ss_pred ceecCCc-ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee------------------ecccce
Confidence 3455653 458888887 45533332 247889999885 4444444210 111224
Q ss_pred eeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeec
Q 019290 99 LGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATG 177 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~ 177 (343)
.+++..+...++.++..++| +..+|.. ..-.++....+.. .-+.++-....+++.+++-+-
T Consensus 64 fdV~Wse~~e~~~~~a~GDGSLrl~d~~-~~s~Pi~~~kEH~--~EV~Svdwn~~~r~~~ltsSW--------------- 125 (311)
T KOG0277|consen 64 FDVAWSENHENQVIAASGDGSLRLFDLT-MPSKPIHKFKEHK--REVYSVDWNTVRRRIFLTSSW--------------- 125 (311)
T ss_pred eEeeecCCCcceEEEEecCceEEEeccC-CCCcchhHHHhhh--hheEEeccccccceeEEeecc---------------
Confidence 56666653334444435666 7777732 2222332111111 122333222222444443321
Q ss_pred CCCceEEEEeCCCC-ceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290 178 DRSGRLLKYDPLKK-NVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE 233 (343)
Q Consensus 178 ~~~~~v~~~d~~~~-~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~ 233 (343)
.+.|=.+++..+ .+.++...-......+++|.-..|+.+.+.++.+..||+..+
T Consensus 126 --D~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~ 180 (311)
T KOG0277|consen 126 --DGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP 180 (311)
T ss_pred --CCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence 334444554422 233333322334556677766668888788888888987754
No 329
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=80.28 E-value=46 Score=30.25 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=31.5
Q ss_pred EEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290 214 FLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 214 ~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
....+.+.++.|..|++....- .-.+.....-..++++.|.|++.++..+
T Consensus 305 ~~l~s~SrDktIk~wdv~tg~c---L~tL~ghdnwVr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVSTGMC---LFTLVGHDNWVRGVAFSPGGKYILSCAD 354 (406)
T ss_pred cEEEeecccceEEEEeccCCeE---EEEEecccceeeeeEEcCCCeEEEEEec
Confidence 4455667788898899875211 0111112223667889999998888776
No 330
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=80.16 E-value=57 Score=31.25 Aligned_cols=156 Identities=16% Similarity=0.086 Sum_probs=88.7
Q ss_pred CCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 35 VGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 35 ~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
..+.++.+.++|.+|-+++.+|.+..||..+.+...-.. .... ..--++.. ...++...
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~------------------~~h~--~rvg~laW-~~~~lssG 276 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR------------------GSHA--SRVGSLAW-NSSVLSSG 276 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc------------------CCcC--ceeEEEec-cCceEEEe
Confidence 368899999999988899999999999976543221100 0011 12223343 34444443
Q ss_pred CCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc-
Q 019290 115 AYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN- 192 (343)
Q Consensus 115 ~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~- 192 (343)
...+ |..+|....+. ......+ ....+-++...+ |+....+-.. .+.++.+|....+
T Consensus 277 sr~~~I~~~dvR~~~~--~~~~~~~-H~qeVCgLkws~-d~~~lASGgn-----------------DN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 277 SRDGKILNHDVRISQH--VVSTLQG-HRQEVCGLKWSP-DGNQLASGGN-----------------DNVVFIWDGLSPEP 335 (484)
T ss_pred cCCCcEEEEEEecchh--hhhhhhc-ccceeeeeEECC-CCCeeccCCC-----------------ccceEeccCCCccc
Confidence 4444 77777654321 1111111 113466788888 5666553322 4567778763332
Q ss_pred eEEeecCCCCcceeEEecCCCEEEEE--EcCCCeEEEEEccC
Q 019290 193 VTVMYNGLSFPNGVALSNNNSFLLLA--ESATLKILRFWLQG 232 (343)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~d~~~lyv~--~~~~~~i~~~~~~~ 232 (343)
...+.........+++.|-...|..+ .+.+++|..|+..+
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~ 377 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT 377 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC
Confidence 23344444556778888876666665 33456777777654
No 331
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=80.10 E-value=31 Score=34.45 Aligned_cols=114 Identities=11% Similarity=0.081 Sum_probs=69.8
Q ss_pred eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290 98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
.+.+.+++-.-++.++..++| |-.+|.+..+-+..... .-..+.++++.|..+..|++...
T Consensus 136 ~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~----nSESiRDV~fsp~~~~~F~s~~d-------------- 197 (839)
T KOG0269|consen 136 ANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS----NSESIRDVKFSPGYGNKFASIHD-------------- 197 (839)
T ss_pred eeeeeeccCCccEEEecCCCceEEEEeeecccccccccc----cchhhhceeeccCCCceEEEecC--------------
Confidence 466778775667888767788 66678865543332222 12468899998855666665543
Q ss_pred cCCCceEEEEeCCCCc-e-EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290 177 GDRSGRLLKYDPLKKN-V-TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE 233 (343)
Q Consensus 177 ~~~~~~v~~~d~~~~~-~-~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~ 233 (343)
.|.|-.||..--. . ..+...-.....+.++|++. +..+...++.|.+|+..+.
T Consensus 198 ---sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 198 ---SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred ---CceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecCCCccEEEEeccCC
Confidence 5667778864211 1 11222223345567788654 5556667888999998754
No 332
>PRK13616 lipoprotein LpqB; Provisional
Probab=80.10 E-value=65 Score=31.90 Aligned_cols=196 Identities=11% Similarity=0.024 Sum_probs=97.5
Q ss_pred eeeEEEeCCCCeEEEEe-------C-CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCccccccc
Q 019290 98 PLGIKFNPVTCDLYIAD-------A-YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQ 169 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~-------~-~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~ 169 (343)
+...+++++++.+.+.. . ...|+..+.. +..+.+.. + .....-.+++..+.+|+......
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~---g---~~~t~PsWspDG~~lw~v~dg~~----- 419 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLE---G---HSLTRPSWSLDADAVWVVVDGNT----- 419 (591)
T ss_pred cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccceeeec---C---CCCCCceECCCCCceEEEecCcc-----
Confidence 34566776444443332 1 1247777754 33343321 1 11344567772256887643210
Q ss_pred ceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEE---EEccC-ccccccceeeec-
Q 019290 170 YFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILR---FWLQG-ERTTYTPQLFAE- 244 (343)
Q Consensus 170 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~---~~~~~-~~~~~~~~~~~~- 244 (343)
...+......+.++..+.++++... .-...+..+.+++||..+.+.. .++|++ ...++ ...+.....+..
T Consensus 420 -~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 420 -VVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred -eEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 0001111124567766666555443 1123478899999999887764 467887 33222 111122222222
Q ss_pred CCCCCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEe
Q 019290 245 MPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEY 324 (343)
Q Consensus 245 ~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (343)
....+..+..-.++.|.++... . ...++.++.+|.....+ +.++....+..+...
T Consensus 495 l~~~~~~l~W~~~~~L~V~~~~-~----------------------~~~v~~v~vDG~~~~~~--~~~n~~~~v~~vaa~ 549 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLVVGRSD-P----------------------EHPVWYVNLDGSNSDAL--PSRNLSAPVVAVAAS 549 (591)
T ss_pred cCCccccceEecCCEEEEEecC-C----------------------CCceEEEecCCcccccc--CCCCccCceEEEecC
Confidence 2222344555567778777553 2 12567777777664432 223233344444444
Q ss_pred CCEEEEecCCC
Q 019290 325 GEYLYTGSSVQ 335 (343)
Q Consensus 325 ~g~l~i~~~~~ 335 (343)
.+.||+++.+.
T Consensus 550 ~~~iyv~~~~g 560 (591)
T PRK13616 550 PSTVYVTDARA 560 (591)
T ss_pred CceEEEEcCCc
Confidence 56788876654
No 333
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=79.88 E-value=45 Score=29.93 Aligned_cols=80 Identities=11% Similarity=0.131 Sum_probs=38.8
Q ss_pred ceEEEEeCCCCceE---EeecCCCCc---ceeEEecCCCEEEEEEcC-----CCeEEEEEccCccccccceeeecCCCCC
Q 019290 181 GRLLKYDPLKKNVT---VMYNGLSFP---NGVALSNNNSFLLLAESA-----TLKILRFWLQGERTTYTPQLFAEMPRFP 249 (343)
Q Consensus 181 ~~v~~~d~~~~~~~---~~~~~~~~~---~~i~~~~d~~~lyv~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~p 249 (343)
..+++||+.+.+.. .....+..+ ...++. + +.+|+..-. ...+++||+.. .+...+...+..+
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~-~~iYv~GG~~~~~~~~~v~~yd~~~----~~W~~~~~~p~~~ 161 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENGSACYK-D-GTLYVGGGNRNGKPSNKSYLFNLET----QEWFELPDFPGEP 161 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-C-CEEEEEeCcCCCccCceEEEEcCCC----CCeeECCCCCCCC
Confidence 46889988766541 112222221 222332 3 457876421 35688898765 2333332222112
Q ss_pred C--ceeeCCCCCEEEEecc
Q 019290 250 D--NIKSDSKGEFWIAMNS 266 (343)
Q Consensus 250 ~--~i~~d~~G~lwi~~~~ 266 (343)
. ..++--+++||+-...
T Consensus 162 r~~~~~~~~~~~iYv~GG~ 180 (323)
T TIGR03548 162 RVQPVCVKLQNELYVFGGG 180 (323)
T ss_pred CCcceEEEECCEEEEEcCC
Confidence 1 2233345788887543
No 334
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=79.44 E-value=54 Score=30.54 Aligned_cols=115 Identities=12% Similarity=0.141 Sum_probs=63.0
Q ss_pred CEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC------------CCeEEEEe
Q 019290 56 GRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA------------YFGLMVVG 123 (343)
Q Consensus 56 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~------------~~gi~~~d 123 (343)
+.||+|+..+.+|+.+.... .+.....+-++..+ .|.||+=.. ..-++.++
T Consensus 98 ndLy~Yn~k~~eWkk~~spn----------------~P~pRsshq~va~~-s~~l~~fGGEfaSPnq~qF~HYkD~W~fd 160 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPN----------------APPPRSSHQAVAVP-SNILWLFGGEFASPNQEQFHHYKDLWLFD 160 (521)
T ss_pred eeeeEEeccccceeEeccCC----------------CcCCCccceeEEec-cCeEEEeccccCCcchhhhhhhhheeeee
Confidence 35899999999999874321 11222235566666 667776321 12488899
Q ss_pred CCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec
Q 019290 124 PNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN 198 (343)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 198 (343)
..+.+++.+.... ++...+-+.|..-.+ .-|.|+.-+... +++.+ .+-||.||.++-++..+..
T Consensus 161 ~~trkweql~~~g-~PS~RSGHRMvawK~-~lilFGGFhd~n--r~y~Y-------yNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 161 LKTRKWEQLEFGG-GPSPRSGHRMVAWKR-QLILFGGFHDSN--RDYIY-------YNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred eccchheeeccCC-CCCCCccceeEEeee-eEEEEcceecCC--CceEE-------eeeeEEEeccceeeeeccC
Confidence 9998888774322 222233344554442 344443221000 00000 3458999988777665543
No 335
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=79.35 E-value=48 Score=29.89 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=74.0
Q ss_pred CceEEEEeCCCCceE-EeecCCCCcceeEEecC-CCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceeeCC-
Q 019290 180 SGRLLKYDPLKKNVT-VMYNGLSFPNGVALSNN-NSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDS- 256 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~-~~~~~~~~~~~i~~~~d-~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~- 256 (343)
.+.|-.||+.+++.- .+.......|++.|... +-....+.+.+|.|..||+..... .....+...++. ..+++|.
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-~a~~~~~~~~~~-~f~~ld~n 126 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-SARISWTQQSGT-PFICLDLN 126 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-hhheeccCCCCC-cceEeecc
Confidence 466888888776543 33333345788888653 444444556688999999876443 222222222221 2456665
Q ss_pred -CCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCC-CCE-EEEeeCCCCCccCCceeEEE--eCCEEEEe
Q 019290 257 -KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVN-GNV-VDVLDGNEGNTLNSVSEVQE--YGEYLYTG 331 (343)
Q Consensus 257 -~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~-~~~~~~~~~~~~~~~~~~~~--~~g~l~i~ 331 (343)
.+++..+....... ...|+-+|.. .++ +..+. ....+-++.+.. .+-+|.++
T Consensus 127 ck~~ii~~GtE~~~s--------------------~A~v~lwDvR~~qq~l~~~~---eSH~DDVT~lrFHP~~pnlLlS 183 (376)
T KOG1188|consen 127 CKKNIIACGTELTRS--------------------DASVVLWDVRSEQQLLRQLN---ESHNDDVTQLRFHPSDPNLLLS 183 (376)
T ss_pred CcCCeEEeccccccC--------------------ceEEEEEEeccccchhhhhh---hhccCcceeEEecCCCCCeEEe
Confidence 56676665431111 3466677753 333 33331 113445665543 35566666
Q ss_pred cCCCCeEEEEc
Q 019290 332 SSVQPYVVVIK 342 (343)
Q Consensus 332 ~~~~~~i~~~~ 342 (343)
+..-.-|-+||
T Consensus 184 GSvDGLvnlfD 194 (376)
T KOG1188|consen 184 GSVDGLVNLFD 194 (376)
T ss_pred ecccceEEeee
Confidence 66655555554
No 336
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=77.90 E-value=76 Score=31.43 Aligned_cols=148 Identities=16% Similarity=0.112 Sum_probs=70.0
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcC-CeeeEEEe-CCCCeEEEEeC
Q 019290 38 ESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCG-RPLGIKFN-PVTCDLYIADA 115 (343)
Q Consensus 38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~gi~~~-~~~~~l~v~~~ 115 (343)
..++..... .+..+..++.+-.|++..+++...... ....+ -+..+++. .+++++.++..
T Consensus 18 r~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~-----------------~~~~g~i~~~i~y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 18 RAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAF-----------------EGPKGFIANSICYAESDKGRLVVGGM 79 (745)
T ss_pred heeEecCCe-EEeecCCCCceeeeeccCcccccceec-----------------ccCcceeeccceeccccCcceEeecc
Confidence 344444333 244556678878888877665542110 01111 12224443 33567888854
Q ss_pred CCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEE
Q 019290 116 YFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTV 195 (343)
Q Consensus 116 ~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 195 (343)
..-+.++.+.+.. ++... .+.. ..+-++.... ++. .++-+-. ...+||+...-. ..
T Consensus 80 D~~i~v~~~~~~~--P~~~L-kgH~-snVC~ls~~~-~~~-~iSgSWD---------------~TakvW~~~~l~---~~ 135 (745)
T KOG0301|consen 80 DTTIIVFKLSQAE--PLYTL-KGHK-SNVCSLSIGE-DGT-LISGSWD---------------STAKVWRIGELV---YS 135 (745)
T ss_pred cceEEEEecCCCC--chhhh-hccc-cceeeeecCC-cCc-eEecccc---------------cceEEecchhhh---cc
Confidence 4446666665433 33211 1111 2244555555 456 3332210 034566553211 11
Q ss_pred eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEE
Q 019290 196 MYNGLSFPNGVALSNNNSFLLLAESATLKILRFW 229 (343)
Q Consensus 196 ~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~ 229 (343)
+..+-.....++.-+++ .|++.+.+..|..|.
T Consensus 136 l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk 167 (745)
T KOG0301|consen 136 LQGHTASVWAVASLPEN--TYVTGSADKTIKLWK 167 (745)
T ss_pred cCCcchheeeeeecCCC--cEEeccCcceeeecc
Confidence 12122223444444544 788988888888876
No 337
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=77.01 E-value=23 Score=32.61 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=22.8
Q ss_pred CeeeEEEeCCCCeEEEEeCCCe-EEEEeCCC
Q 019290 97 RPLGIKFNPVTCDLYIADAYFG-LMVVGPNG 126 (343)
Q Consensus 97 ~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~ 126 (343)
-...|.++-+++.|||+.+-+| |+.||...
T Consensus 313 LITDilISmDDRFLYvs~WLHGDirQYdIsD 343 (476)
T KOG0918|consen 313 LITDILISLDDRFLYVSNWLHGDIRQYDISD 343 (476)
T ss_pred hhheeEEeecCcEEEEEeeeecceeeeccCC
Confidence 3466777766788999987777 88898764
No 338
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=76.98 E-value=54 Score=29.17 Aligned_cols=101 Identities=14% Similarity=0.137 Sum_probs=57.7
Q ss_pred CCeEEEEeCCCeEEEEeCCCCe-EEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290 107 TCDLYIADAYFGLMVVGPNGGQ-AQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK 185 (343)
Q Consensus 107 ~~~l~v~~~~~gi~~~d~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 185 (343)
++.+|++++..|++.+|..+-. .+.+...... ....++.+.. +..|+++.. .++..
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~---gyaygv~vsG--n~aYVadld------------------dgfLi 152 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD---GYAYGVYVSG--NYAYVADLD------------------DGFLI 152 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCC---ceEEEEEecC--CEEEEeecc------------------CcEEE
Confidence 5789999988999999876432 1111111110 2234455554 689998864 23556
Q ss_pred EeCCCCceEEeecCCCC----cceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290 186 YDPLKKNVTVMYNGLSF----PNGVALSNNNSFLLLAESATLKILRFWLQGE 233 (343)
Q Consensus 186 ~d~~~~~~~~~~~~~~~----~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~ 233 (343)
+|..+...-.+...... ...++++ |++-|++.. ++++...|+..+
T Consensus 153 vdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~-d~GL~ivDVSnp 201 (370)
T COG5276 153 VDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWR-DGGLTIVDVSNP 201 (370)
T ss_pred EECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEe-CCCeEEEEccCC
Confidence 66543322222221122 2345554 677888864 677888888754
No 339
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=76.30 E-value=76 Score=30.59 Aligned_cols=122 Identities=17% Similarity=0.191 Sum_probs=71.8
Q ss_pred eeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCC
Q 019290 48 GPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGG 127 (343)
Q Consensus 48 ~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~ 127 (343)
.+..++..|.++.|+...++++.......+ .+..+.+....+-+.+|-++..-.+..+++.++
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h-----------------~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~ 134 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKH-----------------YGNVNEILDAQRLGCIYSVGADLKVVYILEKEK 134 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecCCC-----------------CCcceeeecccccCceEecCCceeEEEEecccc
Confidence 455778889999999888877765432211 122233332332345665533233778888877
Q ss_pred eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCC-Cccee
Q 019290 128 QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLS-FPNGV 206 (343)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~i 206 (343)
+......... ..+.++++.+ ||.+..+.+ ..|-.+|.+++++.....+.. ..+.+
T Consensus 135 ~~~~~~~~~~----~~~~sl~is~-D~~~l~~as-------------------~~ik~~~~~~kevv~~ftgh~s~v~t~ 190 (541)
T KOG4547|consen 135 VIIRIWKEQK----PLVSSLCISP-DGKILLTAS-------------------RQIKVLDIETKEVVITFTGHGSPVRTL 190 (541)
T ss_pred eeeeeeccCC----CccceEEEcC-CCCEEEecc-------------------ceEEEEEccCceEEEEecCCCcceEEE
Confidence 7665544322 3467899999 588776443 357777877777655444433 33445
Q ss_pred EEec
Q 019290 207 ALSN 210 (343)
Q Consensus 207 ~~~~ 210 (343)
.|..
T Consensus 191 ~f~~ 194 (541)
T KOG4547|consen 191 SFTT 194 (541)
T ss_pred EEEE
Confidence 5443
No 340
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=76.12 E-value=77 Score=30.56 Aligned_cols=85 Identities=12% Similarity=0.162 Sum_probs=46.7
Q ss_pred CCCceEEEEeCCCCceEEeecCCCC---cceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCceee
Q 019290 178 DRSGRLLKYDPLKKNVTVMYNGLSF---PNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNIKS 254 (343)
Q Consensus 178 ~~~~~v~~~d~~~~~~~~~~~~~~~---~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 254 (343)
++.|.|+.|+...++++.......+ .+.+....+-..+|-. .....+..++..... -+..+...+..+..+++
T Consensus 77 t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~-~ad~~v~~~~~~~~~---~~~~~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSV-GADLKVVYILEKEKV---IIRIWKEQKPLVSSLCI 152 (541)
T ss_pred cCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEec-CCceeEEEEecccce---eeeeeccCCCccceEEE
Confidence 3356788888877877654443332 2333333333444433 345677777654311 11222222335778999
Q ss_pred CCCCCEEEEecc
Q 019290 255 DSKGEFWIAMNS 266 (343)
Q Consensus 255 d~~G~lwi~~~~ 266 (343)
.+||.+.+....
T Consensus 153 s~D~~~l~~as~ 164 (541)
T KOG4547|consen 153 SPDGKILLTASR 164 (541)
T ss_pred cCCCCEEEeccc
Confidence 999988776555
No 341
>smart00284 OLF Olfactomedin-like domains.
Probab=75.19 E-value=55 Score=28.45 Aligned_cols=48 Identities=27% Similarity=0.445 Sum_probs=28.2
Q ss_pred EEEEEEcCCCeEEEEEccCccccccceeeec---CCCCC--------CceeeCCCCCEEEE
Q 019290 214 FLLLAESATLKILRFWLQGERTTYTPQLFAE---MPRFP--------DNIKSDSKGEFWIA 263 (343)
Q Consensus 214 ~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~p--------~~i~~d~~G~lwi~ 263 (343)
.||........|.+|++..... ...+.+.. ...+| -.+++|+.| ||+-
T Consensus 85 slYY~~~~s~~iiKydL~t~~v-~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~G-LWvI 143 (255)
T smart00284 85 SLYFNKFNSHDICRFDLTTETY-QKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENG-LWVI 143 (255)
T ss_pred eEEEEecCCccEEEEECCCCcE-EEEEecCccccccccccccCCCccEEEEEcCCc-eEEE
Confidence 4777766678899999986433 11122211 01111 237889999 8885
No 342
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=74.09 E-value=8.8 Score=21.01 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=19.4
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeEEE
Q 019290 107 TCDLYIADAYFGLMVVGPNGGQAQQ 131 (343)
Q Consensus 107 ~~~l~v~~~~~gi~~~d~~~~~~~~ 131 (343)
++.+|+++....++.+|.++|+...
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEE
Confidence 5689998655559999999887654
No 343
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=72.97 E-value=75 Score=28.96 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=85.0
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
...++++-|.|+.+.....+..|..++-.++... .|. +..--..-+.+.. +|+|.-+.
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~--------------------~h~ewvr~v~v~~-DGti~As~ 253 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP--------------------GHSEWVRMVRVNQ-DGTIIASC 253 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccceeEEecc--------------------CchHhEEEEEecC-CeeEEEec
Confidence 5778999999997777788888999988876432 221 1111244556665 66666552
Q ss_pred CC-CeEEEEeCCCCeEEEcccccCC-------CC---ccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceE
Q 019290 115 AY-FGLMVVGPNGGQAQQLASSAGG-------IP---FRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRL 183 (343)
Q Consensus 115 ~~-~gi~~~d~~~~~~~~~~~~~~~-------~~---~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v 183 (343)
.. ..+..+-..+++-+......+- .+ ...+++..-..+.+.+.++ +.....|
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s-----------------~SrDktI 316 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS-----------------GSRDKTI 316 (406)
T ss_pred CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe-----------------ecccceE
Confidence 22 2355555444421111111000 00 0111111111100111111 1123446
Q ss_pred EEEeCCCCce-EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 184 LKYDPLKKNV-TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 184 ~~~d~~~~~~-~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
-.+|..++.. -++........+++|+|.|++|. +-..+++|.+|++..
T Consensus 317 k~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~-ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 317 KIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL-SCADDKTLRVWDLKN 365 (406)
T ss_pred EEEeccCCeEEEEEecccceeeeeEEcCCCeEEE-EEecCCcEEEEEecc
Confidence 6677777754 24455667789999999888654 445689999999865
No 344
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=72.82 E-value=9.5 Score=21.65 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=23.6
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEE
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWK 62 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d 62 (343)
...+|++.++++.+.++..++.|..||
T Consensus 13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cEEEEEEecccccceeeCCCCEEEEEC
Confidence 578999999999888888999988876
No 345
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=72.79 E-value=80 Score=29.18 Aligned_cols=52 Identities=8% Similarity=0.059 Sum_probs=36.7
Q ss_pred CceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 180 SGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
...|..+|..+|+.-.-.........+.|..||. +.++...+..|.++|...
T Consensus 153 Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRR 204 (472)
T ss_pred CceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCC
Confidence 4568888888777433233334456788888887 567777889999999754
No 346
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.39 E-value=16 Score=37.76 Aligned_cols=163 Identities=12% Similarity=0.091 Sum_probs=87.5
Q ss_pred CCceEEEcCCCC-eeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEe
Q 019290 36 GPESLAFDCNGE-GPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIAD 114 (343)
Q Consensus 36 ~p~~l~~d~~g~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~ 114 (343)
...+|.+.+.+. .+=.+.++|.|+.||.+..+. .+.. | .......+..++....-..++.+.
T Consensus 118 ~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t-P~~~-----------~-----~~~~~~eI~~lsWNrkvqhILAS~ 180 (1049)
T KOG0307|consen 118 PVLGLDFNPFQGNLLASGADDGEILIWDLNKPET-PFTP-----------G-----SQAPPSEIKCLSWNRKVSHILASG 180 (1049)
T ss_pred ceeeeeccccCCceeeccCCCCcEEEeccCCcCC-CCCC-----------C-----CCCCcccceEeccchhhhHHhhcc
Confidence 356788888644 444677889999999876321 1100 0 001122334455554233566554
Q ss_pred CCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCC-CeEEEEeCCcccccccceeeeeecCCCceEEEEeCC--C
Q 019290 115 AYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNT-GIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPL--K 190 (343)
Q Consensus 115 ~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~d-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~--~ 190 (343)
+.+| ...+|++.. +++...........++.++.+|++ -.++++.... ..-.|-.+|.. +
T Consensus 181 s~sg~~~iWDlr~~--~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd---------------~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 181 SPSGRAVIWDLRKK--KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD---------------SAPVIQLWDLRFAS 243 (1049)
T ss_pred CCCCCceeccccCC--CcccccccCCCccceeeeeeCCCCceeeeeecCCC---------------CCceeEeecccccC
Confidence 4554 788888754 223222222222457899999842 2466655431 12335555632 1
Q ss_pred CceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 191 KNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
--.+.+..+-.+.-++.+.+.+..+.++.-.+++|.+|+..+
T Consensus 244 sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 244 SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 111222223344556666666656667766788898988765
No 347
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=72.09 E-value=63 Score=27.70 Aligned_cols=91 Identities=19% Similarity=0.273 Sum_probs=60.4
Q ss_pred cccccCCCCC---CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEE
Q 019290 26 YQQLQLPGVV---GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIK 102 (343)
Q Consensus 26 ~~~~~~~~~~---~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~ 102 (343)
.+...+.++. ..-+|.+.|....||.-...++||.+|+.++..+.+-... ......+...++.
T Consensus 15 ~~~~~vtGL~~ge~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~--------------~~~al~g~~~gvD 80 (236)
T PF14339_consen 15 TSSVAVTGLAAGESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASP--------------LTVALSGTAFGVD 80 (236)
T ss_pred eccEEeecccCCCeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeeccc--------------ccccccCceEEEe
Confidence 3444454432 4567888886444897778899999999999877762110 0012233477889
Q ss_pred EeCCCCeEEEEeCCCeEEEEeCCCCeEE
Q 019290 103 FNPVTCDLYIADAYFGLMVVGPNGGQAQ 130 (343)
Q Consensus 103 ~~~~~~~l~v~~~~~gi~~~d~~~~~~~ 130 (343)
|.|.-++|-|......-+|+++++|.+.
T Consensus 81 FNP~aDRlRvvs~~GqNlR~npdtGav~ 108 (236)
T PF14339_consen 81 FNPAADRLRVVSNTGQNLRLNPDTGAVT 108 (236)
T ss_pred cCcccCcEEEEccCCcEEEECCCCCCce
Confidence 9987788887743333789999988744
No 348
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.52 E-value=84 Score=28.90 Aligned_cols=89 Identities=13% Similarity=0.116 Sum_probs=55.0
Q ss_pred eecCCCceEEEEeCCCCceEEeecCC--CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCce
Q 019290 175 ATGDRSGRLLKYDPLKKNVTVMYNGL--SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNI 252 (343)
Q Consensus 175 ~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i 252 (343)
.+.+..+.|-.||+..+..-...-++ .....+...+++..+|++++ .+.+..||+.+...++. .+....|.+.++
T Consensus 220 at~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~kl~g~--~~kg~tGsirsi 296 (412)
T KOG3881|consen 220 ATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGKLLGC--GLKGITGSIRSI 296 (412)
T ss_pred EEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc-cchhheecccCceeecc--ccCCccCCcceE
Confidence 33444778889998744321111122 23456777899999998875 67899999765322111 122245668888
Q ss_pred eeCCCCCEEEEecc
Q 019290 253 KSDSKGEFWIAMNS 266 (343)
Q Consensus 253 ~~d~~G~lwi~~~~ 266 (343)
.+++.+.+...+.-
T Consensus 297 h~hp~~~~las~GL 310 (412)
T KOG3881|consen 297 HCHPTHPVLASCGL 310 (412)
T ss_pred EEcCCCceEEeecc
Confidence 99988877666543
No 349
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=70.79 E-value=20 Score=33.07 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=26.5
Q ss_pred cceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290 203 PNGVALSNNNSFLLLAESATLKILRFWLQGE 233 (343)
Q Consensus 203 ~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~ 233 (343)
...+.++-|.+.||++....|-|++||+..+
T Consensus 314 ITDilISmDDRFLYvs~WLHGDirQYdIsDP 344 (476)
T KOG0918|consen 314 ITDILISLDDRFLYVSNWLHGDIRQYDISDP 344 (476)
T ss_pred hheeEEeecCcEEEEEeeeecceeeeccCCC
Confidence 3567788899999999999999999998764
No 350
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=70.77 E-value=33 Score=33.11 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=53.8
Q ss_pred ccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCC
Q 019290 27 QQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPV 106 (343)
Q Consensus 27 ~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~ 106 (343)
.+++++. .+.+.+..++...+.++-.+|.|..||...+ .+.... ..-.|..++.++
T Consensus 254 tsipL~s--~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-~t~~~k--------------------a~~~P~~iaWHp- 309 (545)
T PF11768_consen 254 TSIPLPS--QVICCARSPSEDKLVLGCEDGSIILYDTTRG-VTLLAK--------------------AEFIPTLIAWHP- 309 (545)
T ss_pred EEEecCC--cceEEecCcccceEEEEecCCeEEEEEcCCC-eeeeee--------------------ecccceEEEEcC-
Confidence 3444443 6788999999888899999999999998664 333221 112478899999
Q ss_pred CCeEEEEeCCCe-EEEEeCCCCe
Q 019290 107 TCDLYIADAYFG-LMVVGPNGGQ 128 (343)
Q Consensus 107 ~~~l~v~~~~~g-i~~~d~~~~~ 128 (343)
++.+++.....| +..+|..-..
T Consensus 310 ~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 310 DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred CCcEEEEEcCCceEEEEEeecCc
Confidence 666555445555 8888876543
No 351
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=69.32 E-value=1.2e+02 Score=29.86 Aligned_cols=36 Identities=6% Similarity=0.027 Sum_probs=24.0
Q ss_pred eeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcc
Q 019290 98 PLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLA 133 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~ 133 (343)
...+.+|..+.+||...+.+.||.||..+-.+.+.+
T Consensus 274 ~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~ 309 (720)
T KOG0321|consen 274 QVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVA 309 (720)
T ss_pred eEEEEecCCCCeEEEEecCCcEEEEeccccCcCchh
Confidence 345677774556776655566999998766555543
No 352
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=69.11 E-value=18 Score=20.36 Aligned_cols=32 Identities=25% Similarity=0.138 Sum_probs=22.7
Q ss_pred ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEE
Q 019290 197 YNGLSFPNGVALSNNNSFLLLAESATLKILRFW 229 (343)
Q Consensus 197 ~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~ 229 (343)
.......+.+++++++..+ ++...++.|..|+
T Consensus 8 ~~h~~~i~~i~~~~~~~~~-~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGNFL-ASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTSSEE-EEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEecccccc-eeeCCCCEEEEEC
Confidence 3344567889999997755 4555678888875
No 353
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=68.71 E-value=82 Score=27.67 Aligned_cols=44 Identities=18% Similarity=0.048 Sum_probs=33.1
Q ss_pred ccCCCCCC--CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEee
Q 019290 29 LQLPGVVG--PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFA 72 (343)
Q Consensus 29 ~~~~~~~~--p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~ 72 (343)
-.+|.-+. -+-+++++|+.++-.+..+|.|..||..+.+.-.+.
T Consensus 36 cqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 36 CQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred EecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 35564444 458999999998778889999999998876555443
No 354
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=68.37 E-value=13 Score=21.52 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=18.9
Q ss_pred CeEEEEeCCCeEEEEeCCCCeEEEcc
Q 019290 108 CDLYIADAYFGLMVVGPNGGQAQQLA 133 (343)
Q Consensus 108 ~~l~v~~~~~gi~~~d~~~~~~~~~~ 133 (343)
|.+|+++....++.+|.++|+...-.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEee
Confidence 46788843344999999999877543
No 355
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=68.24 E-value=1.5e+02 Score=30.49 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=21.2
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeEEEc
Q 019290 107 TCDLYIADAYFGLMVVGPNGGQAQQL 132 (343)
Q Consensus 107 ~~~l~v~~~~~gi~~~d~~~~~~~~~ 132 (343)
++.||+++..+.|+.+|.++|+...-
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~ 219 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWK 219 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEE
Confidence 68999997656699999999987654
No 356
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=68.11 E-value=1.2e+02 Score=29.23 Aligned_cols=110 Identities=11% Similarity=0.042 Sum_probs=54.3
Q ss_pred ccccccCCCC--CCCceEEEcCCCCeeEEEec-------------CCEEEEEEcCCCCeEEeeecCCCc--ccccc--C-
Q 019290 25 SYQQLQLPGV--VGPESLAFDCNGEGPYVGVS-------------DGRILKWKAANSGWTEFATTAPHR--AREIC--D- 84 (343)
Q Consensus 25 ~~~~~~~~~~--~~p~~l~~d~~g~~l~~~~~-------------~g~i~~~d~~~~~~~~~~~~~~~~--~~~~~--~- 84 (343)
.+.++.+|+. ..-+++...++|++++.+.. ...|+.+| .++++........+- ..... .
T Consensus 178 v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~ 256 (477)
T PF05935_consen 178 VIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPY 256 (477)
T ss_dssp EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT-
T ss_pred EEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccc
Confidence 3455777742 23689999999997775541 34688899 666655443322221 10000 0
Q ss_pred --CC-CCcccCCCcCCeeeEEEeCCCCeEEEEeCC-CeEEEEeCCCCeEEEcccc
Q 019290 85 --GS-TNTTLEPLCGRPLGIKFNPVTCDLYIADAY-FGLMVVGPNGGQAQQLASS 135 (343)
Q Consensus 85 --~~-~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~ 135 (343)
+. ........-...+++.+++.++.|.++... +.|+++|.+++++..+...
T Consensus 257 ~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 257 PYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp -SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred cccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 00 000000111236789999878888888664 4799999999999876543
No 357
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.92 E-value=1.8e+02 Score=30.86 Aligned_cols=115 Identities=15% Similarity=0.059 Sum_probs=61.0
Q ss_pred eeEEEeCC--CCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290 99 LGIKFNPV--TCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 99 ~gi~~~~~--~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
.|+.++.+ .|.|+++....-|..+|.+..+...- ...+ ....+..+..|-..|++.++.-.
T Consensus 1167 ~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d--iP~~-s~t~vTaLS~~~~~gn~i~AGfa-------------- 1229 (1387)
T KOG1517|consen 1167 TGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD--IPYG-SSTLVTALSADLVHGNIIAAGFA-------------- 1229 (1387)
T ss_pred CCeeeehhhhCCeEEecCCeeEEEEEecccceeEee--cccC-CCccceeecccccCCceEEEeec--------------
Confidence 45666653 45677773333478888876543321 1111 12345566655434677775433
Q ss_pred cCCCceEEEEeCCCCceE----Ee--ecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290 177 GDRSGRLLKYDPLKKNVT----VM--YNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE 233 (343)
Q Consensus 177 ~~~~~~v~~~d~~~~~~~----~~--~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~ 233 (343)
.|.|-.||....... .. .+.......+.+-+.|-.-.|+.+.+|.|..+|+..+
T Consensus 1230 ---DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1230 ---DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred ---CCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 455666664322111 11 1111224445555544443567788999999998763
No 358
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=66.64 E-value=87 Score=28.28 Aligned_cols=139 Identities=12% Similarity=0.080 Sum_probs=70.8
Q ss_pred EEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe-
Q 019290 40 LAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG- 118 (343)
Q Consensus 40 l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g- 118 (343)
-.++++|+ +.+.-.+.+++.-|.++-+..++.. -......|-...+.-.+..+-...+
T Consensus 14 c~fSp~g~-yiAs~~~yrlviRd~~tlq~~qlf~--------------------cldki~yieW~ads~~ilC~~yk~~~ 72 (447)
T KOG4497|consen 14 CSFSPCGN-YIASLSRYRLVIRDSETLQLHQLFL--------------------CLDKIVYIEWKADSCHILCVAYKDPK 72 (447)
T ss_pred eeECCCCC-eeeeeeeeEEEEeccchhhHHHHHH--------------------HHHHhhheeeeccceeeeeeeeccce
Confidence 45788999 5555566677777766643221100 0011222223332334444433443
Q ss_pred EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec
Q 019290 119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN 198 (343)
Q Consensus 119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 198 (343)
|..+++.+-+...-+ .+++ ..+..+...| ||+-...++. | .-+|..+...+.+...+.-
T Consensus 73 vqvwsl~Qpew~ckI--deg~--agls~~~WSP-dgrhiL~tse--F--------------~lriTVWSL~t~~~~~~~~ 131 (447)
T KOG4497|consen 73 VQVWSLVQPEWYCKI--DEGQ--AGLSSISWSP-DGRHILLTSE--F--------------DLRITVWSLNTQKGYLLPH 131 (447)
T ss_pred EEEEEeecceeEEEe--ccCC--CcceeeeECC-CcceEeeeec--c--------------eeEEEEEEeccceeEEecc
Confidence 667777654444322 2222 3466788889 6865554433 1 2234444443333332222
Q ss_pred CCCCcceeEEecCCCEEEEEEc
Q 019290 199 GLSFPNGVALSNNNSFLLLAES 220 (343)
Q Consensus 199 ~~~~~~~i~~~~d~~~lyv~~~ 220 (343)
......|+++++||+..-+.+.
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred cccCceeEEECCCCceeeeeec
Confidence 2233588999999987655543
No 359
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=66.49 E-value=1.1e+02 Score=28.42 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=43.0
Q ss_pred CceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcC----------CCeEEEEEccCccccccceeeecCCCCC
Q 019290 180 SGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESA----------TLKILRFWLQGERTTYTPQLFAEMPRFP 249 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~----------~~~i~~~~~~~~~~~~~~~~~~~~~~~p 249 (343)
...++.+|.++|+...-.-.......+.+.+|+..+|.+... ...|+++.+.++.. ....++ ..+..+
T Consensus 149 ~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~-~d~lvf-e~~~~~ 226 (414)
T PF02897_consen 149 WYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQS-EDELVF-EEPDEP 226 (414)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GG-G-EEEE-C-TTCT
T ss_pred eEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChH-hCeeEE-eecCCC
Confidence 345888999888653211011112238899998887776533 34588888775432 212233 222212
Q ss_pred C---ceeeCCCCCEEE
Q 019290 250 D---NIKSDSKGEFWI 262 (343)
Q Consensus 250 ~---~i~~d~~G~lwi 262 (343)
. ++..+++|+..+
T Consensus 227 ~~~~~~~~s~d~~~l~ 242 (414)
T PF02897_consen 227 FWFVSVSRSKDGRYLF 242 (414)
T ss_dssp TSEEEEEE-TTSSEEE
T ss_pred cEEEEEEecCcccEEE
Confidence 2 355677886544
No 360
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=66.06 E-value=96 Score=27.50 Aligned_cols=120 Identities=15% Similarity=0.094 Sum_probs=67.8
Q ss_pred CCeeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeee
Q 019290 96 GRPLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSI 174 (343)
Q Consensus 96 ~~p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~ 174 (343)
..++.|++......+|.+...+| +..+|++.-....+.-.... +....-.++..+. +--|+++..
T Consensus 197 KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~-~~~pLlRLswnkq-DpnymATf~------------ 262 (364)
T KOG0290|consen 197 KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS-PSTPLLRLSWNKQ-DPNYMATFA------------ 262 (364)
T ss_pred cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC-CCCcceeeccCcC-CchHHhhhh------------
Confidence 35788999873446776655566 88899875443333222111 1122334454443 333444322
Q ss_pred eecCCCceEEEEeCCCC--ceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 175 ATGDRSGRLLKYDPLKK--NVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 175 ~~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
+.+..|..+|..-. -+-++.......|||++.|....-.++.-.+.+...||++.
T Consensus 263 ---~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 263 ---MDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ---cCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 11445666665321 12233444566899999987665566655677888899864
No 361
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=65.91 E-value=12 Score=21.82 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=16.9
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEEcCC
Q 019290 38 ESLAFDCNGEGPYVGVSDGRILKWKAAN 65 (343)
Q Consensus 38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~ 65 (343)
.+++++ +| .+|++..+|.++.+|.++
T Consensus 15 ~~~~v~-~g-~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVA-GG-RVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S--EEC-TS-EEEEE-TTSEEEEEETT-
T ss_pred cCCEEE-CC-EEEEEcCCCEEEEEeCCC
Confidence 344554 34 489999999999999764
No 362
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=65.51 E-value=99 Score=27.47 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=52.4
Q ss_pred eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290 118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY 197 (343)
Q Consensus 118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 197 (343)
.|..+|.++|..........+ .+..+...|. .....++.+..-..+-|..+ ..++....+|...++.....
T Consensus 169 ~VrLCDi~SGs~sH~LsGHr~----~vlaV~Wsp~-~e~vLatgsaDg~irlWDiR----rasgcf~~lD~hn~k~~p~~ 239 (397)
T KOG4283|consen 169 QVRLCDIASGSFSHTLSGHRD----GVLAVEWSPS-SEWVLATGSADGAIRLWDIR----RASGCFRVLDQHNTKRPPIL 239 (397)
T ss_pred cEEEEeccCCcceeeeccccC----ceEEEEeccC-ceeEEEecCCCceEEEEEee----cccceeEEeecccCccCccc
Confidence 488899998887665433221 2344445563 44333333311111111110 01233444454322211111
Q ss_pred ----cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290 198 ----NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ 231 (343)
Q Consensus 198 ----~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~ 231 (343)
......+++|++.|+.+++-.. .+.++..|+..
T Consensus 240 ~~n~ah~gkvngla~tSd~~~l~~~g-td~r~r~wn~~ 276 (397)
T KOG4283|consen 240 KTNTAHYGKVNGLAWTSDARYLASCG-TDDRIRVWNME 276 (397)
T ss_pred cccccccceeeeeeecccchhhhhcc-CccceEEeecc
Confidence 1234579999999998876654 46778888754
No 363
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=64.89 E-value=56 Score=24.39 Aligned_cols=95 Identities=12% Similarity=0.120 Sum_probs=48.1
Q ss_pred cceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCC-CEEEEEEcCC
Q 019290 144 TNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNN-SFLLLAESAT 222 (343)
Q Consensus 144 ~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~-~~lyv~~~~~ 222 (343)
|.-+..++ +|..+.+..+. .....++.||..-+++ +......|.--....|. ..-+-....+
T Consensus 6 PSYvy~~s-ng~~~ass~g~--------------~~g~nvFyYDsti~RI--~TCc~vrP~Y~v~~~D~~~~sf~I~kn~ 68 (123)
T PF11763_consen 6 PSYVYLNS-NGYMIASSNGD--------------PEGENVFYYDSTIKRI--VTCCCVRPIYRVYHDDPNKSSFNIIKNN 68 (123)
T ss_pred cceEEEcC-CCcEEeeccCC--------------cCceeeEEecCCcceE--EEecccccEEEEeecCCCcceEEEEecC
Confidence 45567777 48877766542 2235689998653332 23333334322221121 1111122223
Q ss_pred CeEEEEEccCccccccceeeecCCCCCCceeeCCCCCEEEEecc
Q 019290 223 LKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 223 ~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwi~~~~ 266 (343)
.+.++|.... ...+.|-.+.++.+|++|+.+..
T Consensus 69 dG~~~Ft~~e-----------~~~~ep~~l~~l~dgri~~ts~~ 101 (123)
T PF11763_consen 69 DGTYQFTFVE-----------SSFSEPLDLHTLSDGRIWFTSNE 101 (123)
T ss_pred CCcEEEEEcc-----------cCCCCcEEEEEecCCcEEEEccc
Confidence 3333332211 12334777888999999999854
No 364
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=63.80 E-value=1.1e+02 Score=27.52 Aligned_cols=83 Identities=12% Similarity=0.119 Sum_probs=54.9
Q ss_pred CceEEEEeCCCCceE-EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCCCce---eeC
Q 019290 180 SGRLLKYDPLKKNVT-VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFPDNI---KSD 255 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~-~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i---~~d 255 (343)
.|.|..+|+.+++.. .+...+...|.|.+.|+...|.++.+.+..|..|++... .-..++....++.+.+ -++
T Consensus 114 ~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~---~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD---VCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred eeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC---eEEEEecccccccCcEEEEEEc
Confidence 466778898766654 345566778999999988888888888999999998752 1223443455555443 245
Q ss_pred CCCCEEEEec
Q 019290 256 SKGEFWIAMN 265 (343)
Q Consensus 256 ~~G~lwi~~~ 265 (343)
.+|....++.
T Consensus 191 ~~gd~i~ScG 200 (385)
T KOG1034|consen 191 LDGDRIASCG 200 (385)
T ss_pred CCCCeeeccC
Confidence 6666444443
No 365
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=63.55 E-value=1.3e+02 Score=28.16 Aligned_cols=152 Identities=11% Similarity=0.125 Sum_probs=84.5
Q ss_pred eEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC
Q 019290 39 SLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF 117 (343)
Q Consensus 39 ~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~ 117 (343)
.|.+... -++|..+..+..|..||.++++..... ......+..+.+++....+.+..+..
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-------------------~~~~k~Vq~l~wh~~~p~~LLsGs~D 308 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-------------------THHGKKVQTLEWHPYEPSVLLSGSYD 308 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCcceeh-------------------hhcCCceeEEEecCCCceEEEecccc
Confidence 4444444 345667778889999999887654332 12233456788887555555554445
Q ss_pred e-EEEEeCCCC-eEEEcccccCCCCccCcceeEEeCCC-CeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCC-c-
Q 019290 118 G-LMVVGPNGG-QAQQLASSAGGIPFRFTNDLDIDPNT-GIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKK-N- 192 (343)
Q Consensus 118 g-i~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~d-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~- 192 (343)
+ +..+|.+.- ........ ...+-.+++++.. ..+++++. .|.|+.+|.... +
T Consensus 309 ~~V~l~D~R~~~~s~~~wk~-----~g~VEkv~w~~~se~~f~~~td------------------dG~v~~~D~R~~~~~ 365 (463)
T KOG0270|consen 309 GTVALKDCRDPSNSGKEWKF-----DGEVEKVAWDPHSENSFFVSTD------------------DGTVYYFDIRNPGKP 365 (463)
T ss_pred ceEEeeeccCccccCceEEe-----ccceEEEEecCCCceeEEEecC------------------CceEEeeecCCCCCc
Confidence 5 667776520 00000000 0224456666531 22233221 456777776422 2
Q ss_pred eEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 193 VTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
+..+...-....++++...-..+..+.+..+.+..|+.+.
T Consensus 366 vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 366 VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 2223333446788888776666778877788888888775
No 366
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.86 E-value=1e+02 Score=26.77 Aligned_cols=157 Identities=12% Similarity=0.104 Sum_probs=76.0
Q ss_pred CceEEEcCC-CCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 37 PESLAFDCN-GEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 37 p~~l~~d~~-g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
.-++++.+. .+.+++...+|.+..||..-.+. .+. ........+.++......+..++...
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-Pi~-----------------~~kEH~~EV~Svdwn~~~r~~~ltsS 124 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-PIH-----------------KFKEHKREVYSVDWNTVRRRIFLTSS 124 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCCCc-chh-----------------HHHhhhhheEEeccccccceeEEeec
Confidence 456677665 44567778888888888422110 000 00000112333333332333333333
Q ss_pred CCe-EEEEeCCCC-eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290 116 YFG-LMVVGPNGG-QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV 193 (343)
Q Consensus 116 ~~g-i~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 193 (343)
.++ |-.+++.-. .++.+ .+ ....+.+.+..|...+++.+.++. ...++|-++.. |+.
T Consensus 125 WD~TiKLW~~~r~~Sv~Tf----~g-h~~~Iy~a~~sp~~~nlfas~Sgd---------------~~l~lwdvr~~-gk~ 183 (311)
T KOG0277|consen 125 WDGTIKLWDPNRPNSVQTF----NG-HNSCIYQAAFSPHIPNLFASASGD---------------GTLRLWDVRSP-GKF 183 (311)
T ss_pred cCCceEeecCCCCcceEee----cC-CccEEEEEecCCCCCCeEEEccCC---------------ceEEEEEecCC-Cce
Confidence 344 444443211 12221 11 124466777777667888877652 13345555544 333
Q ss_pred EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 194 TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 194 ~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
..+...-...-...++.-...+.++...++.|+.||+..
T Consensus 184 ~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 184 MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence 333322222222334444455777777889999999754
No 367
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.99 E-value=1.3e+02 Score=27.75 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=28.2
Q ss_pred CceEEEEe-CCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 180 SGRLLKYD-PLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 180 ~~~v~~~d-~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.|.+..++ |.................+.|++|++.|.-... ....+|+...
T Consensus 165 dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~--d~~~VW~~~~ 216 (398)
T KOG0771|consen 165 DGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA--DSARVWSVNT 216 (398)
T ss_pred cceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC--CceEEEEecc
Confidence 34455555 332221122234456789999999986543333 2566677654
No 368
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=61.74 E-value=37 Score=32.50 Aligned_cols=92 Identities=12% Similarity=0.129 Sum_probs=57.0
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
.+..+++.+||.+|-+-..+|-|..||..+.++.-+ +.+-++.-..++.++ ++.+.+...
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~-------------------mkSYFGGLLCvcWSP-DGKyIvtGG 351 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV-------------------MKSYFGGLLCVCWSP-DGKYIVTGG 351 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHH-------------------HHhhccceEEEEEcC-CccEEEecC
Confidence 578899999999776777888788888776443211 113344455677888 555444323
Q ss_pred CCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeC
Q 019290 116 YFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDP 151 (343)
Q Consensus 116 ~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~ 151 (343)
.+- |.++....+++...-+. .-.+++.+++|+
T Consensus 352 EDDLVtVwSf~erRVVARGqG----HkSWVs~VaFDp 384 (636)
T KOG2394|consen 352 EDDLVTVWSFEERRVVARGQG----HKSWVSVVAFDP 384 (636)
T ss_pred CcceEEEEEeccceEEEeccc----cccceeeEeecc
Confidence 344 55666665555433221 126888999995
No 369
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=61.20 E-value=91 Score=30.21 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=47.6
Q ss_pred CcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCC
Q 019290 143 FTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESAT 222 (343)
Q Consensus 143 ~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~ 222 (343)
.+...+..+.+..+.++-. .+.|..||...+ +.......-.|.-++++|+|..+.++ +..
T Consensus 261 ~v~~ca~sp~E~kLvlGC~------------------DgSiiLyD~~~~-~t~~~ka~~~P~~iaWHp~gai~~V~-s~q 320 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCE------------------DGSIILYDTTRG-VTLLAKAEFIPTLIAWHPDGAIFVVG-SEQ 320 (545)
T ss_pred cceEEecCcccceEEEEec------------------CCeEEEEEcCCC-eeeeeeecccceEEEEcCCCcEEEEE-cCC
Confidence 4556667775456666443 457888997654 33334444558999999999866555 567
Q ss_pred CeEEEEEccC
Q 019290 223 LKILRFWLQG 232 (343)
Q Consensus 223 ~~i~~~~~~~ 232 (343)
|.|..||..-
T Consensus 321 GelQ~FD~AL 330 (545)
T PF11768_consen 321 GELQCFDMAL 330 (545)
T ss_pred ceEEEEEeec
Confidence 8999999763
No 370
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=60.66 E-value=1.1e+02 Score=26.40 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=65.9
Q ss_pred EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCC----CceE
Q 019290 119 LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLK----KNVT 194 (343)
Q Consensus 119 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~----~~~~ 194 (343)
-..||+.+++++.+... ...++.+-++.+ ||++.++-... .+...+..+++.+ ....
T Consensus 48 s~~yD~~tn~~rpl~v~----td~FCSgg~~L~-dG~ll~tGG~~--------------~G~~~ir~~~p~~~~~~~~w~ 108 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ----TDTFCSGGAFLP-DGRLLQTGGDN--------------DGNKAIRIFTPCTSDGTCDWT 108 (243)
T ss_pred EEEEecCCCcEEeccCC----CCCcccCcCCCC-CCCEEEeCCCC--------------ccccceEEEecCCCCCCCCce
Confidence 56889999998876422 235677777888 59888754321 1122355566543 1222
Q ss_pred EeecCCCC----cceeEEecCCCEEEEEEcCCCeEEEEEccCccc-cccceeeecC-CCCCCc----eeeCCCCCEEEEe
Q 019290 195 VMYNGLSF----PNGVALSNNNSFLLLAESATLKILRFWLQGERT-TYTPQLFAEM-PRFPDN----IKSDSKGEFWIAM 264 (343)
Q Consensus 195 ~~~~~~~~----~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~-~~~~~~~~~~-~~~p~~----i~~d~~G~lwi~~ 264 (343)
.....+.. |... .-+||+.+.+..........++...... ......+... ...+.+ +.+-++|+|++-.
T Consensus 109 e~~~~m~~~RWYpT~~-~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~a 187 (243)
T PF07250_consen 109 ESPNDMQSGRWYPTAT-TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFA 187 (243)
T ss_pred ECcccccCCCccccce-ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEE
Confidence 21111221 3333 3478988888776544444333221111 0111111111 122333 4578899999988
Q ss_pred cc
Q 019290 265 NS 266 (343)
Q Consensus 265 ~~ 266 (343)
+.
T Consensus 188 n~ 189 (243)
T PF07250_consen 188 NR 189 (243)
T ss_pred cC
Confidence 76
No 371
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=60.50 E-value=22 Score=22.75 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=26.6
Q ss_pred CceeeCCCCCEEEEeccCC--CccccccccccccccCCCcccCCCeEEEECCCCCEEEEee
Q 019290 250 DNIKSDSKGEFWIAMNSAR--GKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLD 308 (343)
Q Consensus 250 ~~i~~d~~G~lwi~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~ 308 (343)
..+++.+||+|.++..... ... ...|.|++++|.+=..+.
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~~~~~-------------------~~~l~Rln~DGsLDttFg 45 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNSSGNN-------------------DFVLARLNADGSLDTTFG 45 (55)
T ss_pred EEEEECCCCcEEEEEEeecCCCcc-------------------cEEEEEECCCCCccCCcC
Confidence 3567888999999865311 000 237889999998765553
No 372
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=59.66 E-value=68 Score=31.00 Aligned_cols=119 Identities=11% Similarity=0.064 Sum_probs=70.6
Q ss_pred CcCCeeeEEEeCCCCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCC-CCeEEEEeCCcccccccce
Q 019290 94 LCGRPLGIKFNPVTCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPN-TGIVYFTDSSIYFQRRQYF 171 (343)
Q Consensus 94 ~~~~p~gi~~~~~~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-dg~l~v~~~~~~~~~~~~~ 171 (343)
..+.++.+.... +|.++++... ..+.++|+-..|....+.+... ..+.++.+-|. .+++.++..+
T Consensus 49 H~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt---aNIFsvKFvP~tnnriv~sgAg--------- 115 (758)
T KOG1310|consen 49 HTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHT---ANIFSVKFVPYTNNRIVLSGAG--------- 115 (758)
T ss_pred ccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccc---cceeEEeeeccCCCeEEEeccC---------
Confidence 345677788887 7777766433 4588888864444333333222 23455555542 2567665543
Q ss_pred eeeeecCCCceEEEEeCCCCc-------e-E---EeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290 172 MSIATGDRSGRLLKYDPLKKN-------V-T---VMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE 233 (343)
Q Consensus 172 ~~~~~~~~~~~v~~~d~~~~~-------~-~---~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~ 233 (343)
...|..+|.+..+ + + ..........-|+..+++-..+|+.+.+|.|..+|+..+
T Consensus 116 --------Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 116 --------DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred --------cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 3456667765211 1 0 111234455677887888677888888999999998753
No 373
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=58.36 E-value=1.8e+02 Score=28.12 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=68.2
Q ss_pred CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEe
Q 019290 117 FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVM 196 (343)
Q Consensus 117 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 196 (343)
..++.++.++.... +.-... .-++++...+. ++=+..-.+ -+ ...+..||.+..-+..+
T Consensus 251 q~Lyll~t~g~s~~-V~L~k~----GPVhdv~W~~s-~~EF~VvyG--------------fM-PAkvtifnlr~~~v~df 309 (566)
T KOG2315|consen 251 QTLYLLATQGESVS-VPLLKE----GPVHDVTWSPS-GREFAVVYG--------------FM-PAKVTIFNLRGKPVFDF 309 (566)
T ss_pred ceEEEEEecCceEE-EecCCC----CCceEEEECCC-CCEEEEEEe--------------cc-cceEEEEcCCCCEeEeC
Confidence 45788877733322 211112 23788888884 764443322 12 45688888874433222
Q ss_pred ecCCCCcceeEEecCCCEEEEEEcC--CCeEEEEEccCccccccceeeecCCCCCCc--eeeCCCCCEEEEecc
Q 019290 197 YNGLSFPNGVALSNNNSFLLLAESA--TLKILRFWLQGERTTYTPQLFAEMPRFPDN--IKSDSKGEFWIAMNS 266 (343)
Q Consensus 197 ~~~~~~~~~i~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~--i~~d~~G~lwi~~~~ 266 (343)
. -...|.+.++|.|+.+.++... .|.+.+||... .+.+..... .+. ....+||+.+++...
T Consensus 310 ~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n------~K~i~~~~a-~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 310 P--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN------RKLIAKFKA-ANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred C--CCCccceEECCCCCEEEEeecCCCCCceEEEeccc------hhhcccccc-CCceEEEEcCCCcEEEEEec
Confidence 2 2335788899999988888665 48899998643 233333222 222 234688876665444
No 374
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=57.87 E-value=81 Score=29.14 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=57.6
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCC--------------eEEeeecCCCccccccCCCCCcccCCCcCCeeeE
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSG--------------WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGI 101 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi 101 (343)
....+-++++|+++-.+..+|.++.|.+.... |.... ........+..+
T Consensus 67 aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k-----------------~lr~h~~diydL 129 (434)
T KOG1009|consen 67 AVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKK-----------------VLRGHRDDIYDL 129 (434)
T ss_pred eeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEE-----------------Eecccccchhhh
Confidence 46788899999966677778888888665210 11110 000011234556
Q ss_pred EEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEE
Q 019290 102 KFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVY 157 (343)
Q Consensus 102 ~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~ 157 (343)
+..++++.+-.+...+.++.+|...|+........ ...+.+++.|+. +...
T Consensus 130 ~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh----~~yvqgvawDpl-~qyv 180 (434)
T KOG1009|consen 130 AWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH----EHYVQGVAWDPL-NQYV 180 (434)
T ss_pred hccCCCceeeeeeccceEEEEEeccceeEeecccc----ccccceeecchh-hhhh
Confidence 66663333334433456889999888876543322 246778888884 4433
No 375
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=57.68 E-value=1.6e+02 Score=27.18 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=22.9
Q ss_pred eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEe
Q 019290 118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTD 160 (343)
Q Consensus 118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~ 160 (343)
.+.+||+.+.+++.+....... ..-..+++. +++||+..
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~--~~~~a~v~~--~~~iYv~G 228 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLG--TAGSAVVIK--GNKLWLIN 228 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCC--CCcceEEEE--CCEEEEEe
Confidence 4889999998888765332211 112234443 37888743
No 376
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=56.66 E-value=98 Score=30.80 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=71.4
Q ss_pred eEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290 100 GIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR 179 (343)
Q Consensus 100 gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~ 179 (343)
--+++.....+-++....-+|.++..+++...+... + ....+....+.+. ..+.++ +..
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~--~-~~~~~~~~~vs~~-e~lvAa-----------------gt~ 96 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE--G-ATGITCVRSVSSV-EYLVAA-----------------GTA 96 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhccccc--C-ccceEEEEEecch-hHhhhh-----------------hcC
Confidence 344555455677774333388888887766544221 1 1112223344442 333332 222
Q ss_pred CceEEEEeCCCCceE--Eeec-----CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC-ccccccceeeecCCCCCCc
Q 019290 180 SGRLLKYDPLKKNVT--VMYN-----GLSFPNGVALSNNNSFLLLAESATLKILRFWLQG-ERTTYTPQLFAEMPRFPDN 251 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~--~~~~-----~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~p~~ 251 (343)
.++|..+-...+... .+.. .......+++++++..+|..+. .|.|....++. ...+-....+. ..+..
T Consensus 97 ~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~-~Gkv~~~~L~s~~~~~~~~q~il---~~ds~ 172 (726)
T KOG3621|consen 97 SGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS-QGKVVLTELDSRQAFLSKSQEIL---SEDSE 172 (726)
T ss_pred CceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCC-CceEEEEEechhhhhccccceee---ccCcc
Confidence 445554433221111 1111 1234678899999999998765 67887777765 11101111111 12445
Q ss_pred eee-C-CCCCEEEEecc
Q 019290 252 IKS-D-SKGEFWIAMNS 266 (343)
Q Consensus 252 i~~-d-~~G~lwi~~~~ 266 (343)
|+. | -++.|.|++..
T Consensus 173 IVQlD~~q~~LLVStl~ 189 (726)
T KOG3621|consen 173 IVQLDYLQSYLLVSTLT 189 (726)
T ss_pred eEEeecccceehHhhhh
Confidence 543 3 46788888765
No 377
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=56.52 E-value=2e+02 Score=27.92 Aligned_cols=111 Identities=14% Similarity=0.210 Sum_probs=62.1
Q ss_pred CCeeeEEEeCCCCeEEEEeCC---CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEE-EeCCcccccccce
Q 019290 96 GRPLGIKFNPVTCDLYIADAY---FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYF-TDSSIYFQRRQYF 171 (343)
Q Consensus 96 ~~p~gi~~~~~~~~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v-~~~~~~~~~~~~~ 171 (343)
+.+++....+ .++=+.+..+ ..+-.+|++..-+- ...++. =|.+.+.|. |++.+ +.-
T Consensus 271 GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~~~v~---df~egp----RN~~~fnp~-g~ii~lAGF---------- 331 (566)
T KOG2315|consen 271 GPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRGKPVF---DFPEGP----RNTAFFNPH-GNIILLAGF---------- 331 (566)
T ss_pred CCceEEEECC-CCCEEEEEEecccceEEEEcCCCCEeE---eCCCCC----ccceEECCC-CCEEEEeec----------
Confidence 3457788887 5543333222 45778888743322 222332 367788884 76554 222
Q ss_pred eeeeecCCCceEEEEeCCCCceEEeec-CCCCcceeEEecCCCEEEEEEcC-----CCeEEEEEccC
Q 019290 172 MSIATGDRSGRLLKYDPLKKNVTVMYN-GLSFPNGVALSNNNSFLLLAESA-----TLKILRFWLQG 232 (343)
Q Consensus 172 ~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~i~~~~d~~~lyv~~~~-----~~~i~~~~~~~ 232 (343)
++-.|.+-.+|....+. +.. ......-..++|||++++.+.+. ++++-.|+..|
T Consensus 332 -----GNL~G~mEvwDv~n~K~--i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 332 -----GNLPGDMEVWDVPNRKL--IAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred -----CCCCCceEEEeccchhh--ccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 23367788888764322 111 11234456788999988776654 35555566655
No 378
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=56.46 E-value=41 Score=20.11 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=20.9
Q ss_pred eeeEEEeCCCCeEEEEeCCCeEEEEeCCC
Q 019290 98 PLGIKFNPVTCDLYIADAYFGLMVVGPNG 126 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~~gi~~~d~~~ 126 (343)
..++.+. ++.+|+++...|+..+|...
T Consensus 4 a~~v~v~--g~yaYva~~~~Gl~IvDISn 30 (42)
T PF08309_consen 4 ARDVAVS--GNYAYVADGNNGLVIVDISN 30 (42)
T ss_pred EEEEEEE--CCEEEEEeCCCCEEEEECCC
Confidence 3456666 68999998778999998753
No 379
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=54.68 E-value=1.4e+02 Score=25.76 Aligned_cols=176 Identities=14% Similarity=0.089 Sum_probs=0.0
Q ss_pred EEEeCCCCeEEEEeCCCeEEEEeC-CCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290 101 IKFNPVTCDLYIADAYFGLMVVGP-NGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR 179 (343)
Q Consensus 101 i~~~~~~~~l~v~~~~~gi~~~d~-~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~ 179 (343)
++.+..+++|++| +..|++.++. ...+...+..... +..+.+-++-+.+.+ -.
T Consensus 1 ~c~~~~~~~L~vG-t~~Gl~~~~~~~~~~~~~i~~~~~------I~ql~vl~~~~~llv-------------------Ls 54 (275)
T PF00780_consen 1 VCADSWGDRLLVG-TEDGLYVYDLSDPSKPTRILKLSS------ITQLSVLPELNLLLV-------------------LS 54 (275)
T ss_pred CCcccCCCEEEEE-ECCCEEEEEecCCccceeEeecce------EEEEEEecccCEEEE-------------------Ec
Q ss_pred CceEEEEeCCCCceEE---------------eecCCCCcceeE-EecCCCEEEEEEcCCCeEEEEEccCccccccc-eee
Q 019290 180 SGRLLKYDPLKKNVTV---------------MYNGLSFPNGVA-LSNNNSFLLLAESATLKILRFWLQGERTTYTP-QLF 242 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~~---------------~~~~~~~~~~i~-~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~-~~~ 242 (343)
.+.|+.++.+.-.... .........-.+ ........+..-....+|..|....+. ... +.+
T Consensus 55 d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~--~~f~~~~ 132 (275)
T PF00780_consen 55 DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPR--NSFSKLL 132 (275)
T ss_pred CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCc--cccccee
Q ss_pred ec--CCCCCCceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCc------
Q 019290 243 AE--MPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNT------ 314 (343)
Q Consensus 243 ~~--~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~------ 314 (343)
.+ .+..|..++.- ++.+.++... +.+.+|.+......+..+....
T Consensus 133 ke~~lp~~~~~i~~~-~~~i~v~~~~--------------------------~f~~idl~~~~~~~l~~~~~~~~~~~~~ 185 (275)
T PF00780_consen 133 KEISLPDPPSSIAFL-GNKICVGTSK--------------------------GFYLIDLNTGSPSELLDPSDSSSSFKSR 185 (275)
T ss_pred EEEEcCCCcEEEEEe-CCEEEEEeCC--------------------------ceEEEecCCCCceEEeCccCCcchhhhc
Q ss_pred ---cCCceeEEEeCCEEEEe
Q 019290 315 ---LNSVSEVQEYGEYLYTG 331 (343)
Q Consensus 315 ---~~~~~~~~~~~g~l~i~ 331 (343)
...+......++++.+.
T Consensus 186 ~~~~~~~~~~~~~~~e~Ll~ 205 (275)
T PF00780_consen 186 NSSSKPLGIFQLSDNEFLLC 205 (275)
T ss_pred ccCCCceEEEEeCCceEEEE
No 380
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=53.98 E-value=2.2e+02 Score=27.84 Aligned_cols=149 Identities=16% Similarity=0.121 Sum_probs=87.8
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEE-e
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIA-D 114 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~-~ 114 (343)
...++++..-++.++.+..+..+..||..++.......- . ...+..++. .+.+.++ .
T Consensus 251 ~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g-------------------h--~stv~~~~~-~~~~~~sgs 308 (537)
T KOG0274|consen 251 GVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQG-------------------H--TSSVRCLTI-DPFLLVSGS 308 (537)
T ss_pred CceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecC-------------------C--CceEEEEEc-cCceEeecc
Confidence 467888887677788888899999999888877655320 0 012333443 3333333 2
Q ss_pred CCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceE
Q 019290 115 AYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVT 194 (343)
Q Consensus 115 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 194 (343)
...-|..++.++++...+... ....++.+..+. +.++.+.. .+.|-.||..+++.-
T Consensus 309 ~D~tVkVW~v~n~~~l~l~~~----h~~~V~~v~~~~--~~lvsgs~------------------d~~v~VW~~~~~~cl 364 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNLLRG----HTGPVNCVQLDE--PLLVSGSY------------------DGTVKVWDPRTGKCL 364 (537)
T ss_pred CCceEEEEeccCcceEEEecc----ccccEEEEEecC--CEEEEEec------------------CceEEEEEhhhceee
Confidence 334588888887776554332 123467777663 56665443 345666676666543
Q ss_pred EeecC-CCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 195 VMYNG-LSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 195 ~~~~~-~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
....+ -.....+.++.. ..+ ++.+.+..|..||+.+
T Consensus 365 ~sl~gH~~~V~sl~~~~~-~~~-~Sgs~D~~IkvWdl~~ 401 (537)
T KOG0274|consen 365 KSLSGHTGRVYSLIVDSE-NRL-LSGSLDTTIKVWDLRT 401 (537)
T ss_pred eeecCCcceEEEEEecCc-ceE-EeeeeccceEeecCCc
Confidence 32222 223455555432 434 4555678899999876
No 381
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=52.59 E-value=2e+02 Score=26.96 Aligned_cols=106 Identities=11% Similarity=0.079 Sum_probs=54.3
Q ss_pred CCeEEEEeCC-CeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEE
Q 019290 107 TCDLYIADAY-FGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLK 185 (343)
Q Consensus 107 ~~~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 185 (343)
..+++.+... .-|..+|.++++......- .+ ..++.+.+.+....+.++-+. .+.|..
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~-~~---k~Vq~l~wh~~~p~~LLsGs~-----------------D~~V~l 313 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITH-HG---KKVQTLEWHPYEPSVLLSGSY-----------------DGTVAL 313 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhh-cC---CceeEEEecCCCceEEEeccc-----------------cceEEe
Confidence 3455555333 3488899999886654331 11 236677777653444443321 233444
Q ss_pred EeCCC-CceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCc
Q 019290 186 YDPLK-KNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGE 233 (343)
Q Consensus 186 ~d~~~-~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~ 233 (343)
+|... ........--....-+++++.....+++.+.+|.|+.+|+..+
T Consensus 314 ~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~ 362 (463)
T KOG0270|consen 314 KDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP 362 (463)
T ss_pred eeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC
Confidence 43220 0000001111223445566655556666777788888887643
No 382
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=52.59 E-value=1.4e+02 Score=27.01 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=48.8
Q ss_pred CceEEEEeCCCCceEE-eecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCCCCCceeeCCC
Q 019290 180 SGRLLKYDPLKKNVTV-MYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPRFPDNIKSDSK 257 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~~-~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~ 257 (343)
.+.|..++....+... +..+......+.++|||+.+..+....-+|.+|.+.+. ....+.- ..+ ..|+++.+|
T Consensus 70 ~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~----~~~~~~~pK~~-~kg~~f~~d 144 (447)
T KOG4497|consen 70 DPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ----KGYLLPHPKTN-VKGYAFHPD 144 (447)
T ss_pred cceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc----eeEEecccccC-ceeEEECCC
Confidence 3456666654444432 33444566788999999887777777889999998752 2111111 112 367888889
Q ss_pred CCEEE
Q 019290 258 GEFWI 262 (343)
Q Consensus 258 G~lwi 262 (343)
|++-.
T Consensus 145 g~f~a 149 (447)
T KOG4497|consen 145 GQFCA 149 (447)
T ss_pred Cceee
Confidence 87543
No 383
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=52.43 E-value=2.6e+02 Score=28.06 Aligned_cols=104 Identities=16% Similarity=0.075 Sum_probs=56.9
Q ss_pred EEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe-E
Q 019290 41 AFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG-L 119 (343)
Q Consensus 41 ~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g-i 119 (343)
|+|..+..+-++...|.+|.|+-.++.+..+... ..-+....+.+++ ...+..+.+.+| |
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~------------------~~~~~~~~~~vs~-~e~lvAagt~~g~V 100 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE------------------GATGITCVRSVSS-VEYLVAAGTASGRV 100 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhccccc------------------CccceEEEEEecc-hhHhhhhhcCCceE
Confidence 4567778677888999999998877766554321 1111233455665 444444434555 4
Q ss_pred EEEeCCCCeEEEccc-ccCCC-CccCcceeEEeCCCCeEEEEeCCc
Q 019290 120 MVVGPNGGQAQQLAS-SAGGI-PFRFTNDLDIDPNTGIVYFTDSSI 163 (343)
Q Consensus 120 ~~~d~~~~~~~~~~~-~~~~~-~~~~~~~i~~d~~dg~l~v~~~~~ 163 (343)
.++....+....... ..... ....+..+..+++.-++|.+|...
T Consensus 101 ~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~G 146 (726)
T KOG3621|consen 101 SVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQG 146 (726)
T ss_pred EeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCc
Confidence 444443322211111 11111 125577888888534688887653
No 384
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=51.89 E-value=1.8e+02 Score=26.03 Aligned_cols=114 Identities=13% Similarity=0.048 Sum_probs=66.3
Q ss_pred eeeEEEeCCCCeEEEEeCCCe-EEEEeCCC-CeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeee
Q 019290 98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNG-GQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIA 175 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~-~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~ 175 (343)
+-.++|+++...+.++...+| |+.++.+. |....-+..... .-+.+++... ||...++...
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~---~PvL~v~Wsd-dgskVf~g~~------------- 92 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD---GPVLDVCWSD-DGSKVFSGGC------------- 92 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC---CCeEEEEEcc-CCceEEeecc-------------
Confidence 346888886677776655555 77777654 343332111111 2356777777 4664443322
Q ss_pred ecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCC-CEEEEEEcCCCeEEEEEccC
Q 019290 176 TGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNN-SFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 176 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~-~~lyv~~~~~~~i~~~~~~~ 232 (343)
.+.+-.+|..++++..+...-.....+.+-+.. -.+.++.+-+.+|..||...
T Consensus 93 ----Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 93 ----DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred ----CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence 345667788888877665443434444443322 23667888888898888654
No 385
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=51.73 E-value=2e+02 Score=26.57 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=33.9
Q ss_pred ceEEEEeC---CCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 181 GRLLKYDP---LKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 181 ~~v~~~d~---~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
|.++.+|. ..+..+.+....+....+++++|++++..+ .....|++.....
T Consensus 129 gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~Iita-DRDEkIRvs~ypa 182 (390)
T KOG3914|consen 129 GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITA-DRDEKIRVSRYPA 182 (390)
T ss_pred CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEe-cCCceEEEEecCc
Confidence 34555543 224555556677888999999999876555 4577888876653
No 386
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=50.74 E-value=3.3e+02 Score=28.82 Aligned_cols=127 Identities=16% Similarity=0.144 Sum_probs=0.0
Q ss_pred eEEEeCCCCeEEEEeCCCeE-EEEeC----CCCeEEEcccccCC---CCccCcceeEEeCCCCeEEEEeCCcccccccce
Q 019290 100 GIKFNPVTCDLYIADAYFGL-MVVGP----NGGQAQQLASSAGG---IPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYF 171 (343)
Q Consensus 100 gi~~~~~~~~l~v~~~~~gi-~~~d~----~~~~~~~~~~~~~~---~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~ 171 (343)
..+++...+.++++...... ..++. ..+..+.+...... .+...+-++..-.+.+.+.++..+
T Consensus 26 ~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~--------- 96 (928)
T PF04762_consen 26 ATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALAS--------- 96 (928)
T ss_pred eEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECC---------
Q ss_pred eeeeecCCCceEEEE----eCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCC
Q 019290 172 MSIATGDRSGRLLKY----DPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPR 247 (343)
Q Consensus 172 ~~~~~~~~~~~v~~~----d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 247 (343)
|.|..+ ++.+..++.+-.--.+..+++++||++.|.++ +..+.|...+ ..+..+.+.+-
T Consensus 97 ---------Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~v-T~~~~l~~mt-------~~fd~i~E~~l 159 (928)
T PF04762_consen 97 ---------GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALV-TGEGNLLLMT-------RDFDPISEVPL 159 (928)
T ss_pred ---------ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEE-eCCCEEEEEe-------ccceEEEEeec
Q ss_pred CCCce
Q 019290 248 FPDNI 252 (343)
Q Consensus 248 ~p~~i 252 (343)
.++..
T Consensus 160 ~~~~~ 164 (928)
T PF04762_consen 160 DSDDF 164 (928)
T ss_pred Ccccc
No 387
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=50.61 E-value=2.5e+02 Score=27.40 Aligned_cols=70 Identities=17% Similarity=0.099 Sum_probs=42.8
Q ss_pred ceeeCC-CCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCCEEEEeeCCCCCccCCceeEEEeCCEEE
Q 019290 251 NIKSDS-KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGNVVDVLDGNEGNTLNSVSEVQEYGEYLY 329 (343)
Q Consensus 251 ~i~~d~-~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 329 (343)
-...|+ +|.|=|++.. +... +.... ...+.|+.+|.+-+++..+..-. ..-.+..+...+++.|
T Consensus 275 qFsmdE~~G~LRvaTT~-~~~~-----~~~~~-------~s~N~lyVLD~~L~~vG~l~~la--~gE~IysvRF~Gd~~Y 339 (521)
T PF09826_consen 275 QFSMDEYDGYLRVATTS-GNWW-----WDSED-------TSSNNLYVLDEDLKIVGSLEGLA--PGERIYSVRFMGDRAY 339 (521)
T ss_pred cccEeccCCEEEEEEec-Cccc-----ccCCC-------CceEEEEEECCCCcEeEEccccC--CCceEEEEEEeCCeEE
Confidence 355676 5778777655 2100 00000 23568999997777776664211 2246778888899999
Q ss_pred EecCCC
Q 019290 330 TGSSVQ 335 (343)
Q Consensus 330 i~~~~~ 335 (343)
+-|+.+
T Consensus 340 ~VTFrq 345 (521)
T PF09826_consen 340 LVTFRQ 345 (521)
T ss_pred EEEEee
Confidence 988766
No 388
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=50.48 E-value=1e+02 Score=27.16 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=34.5
Q ss_pred ccccccccCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCCCe
Q 019290 23 SKSYQQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGW 68 (343)
Q Consensus 23 ~~~~~~~~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~ 68 (343)
+......++|..+.--.+++-.+|++.|+--..+.|..-|..+..+
T Consensus 31 p~p~~~velp~~s~~l~ia~~~~g~~gwlVg~rgtiletdd~g~tw 76 (339)
T COG4447 31 PNPWTDVELPTLSPTLDIAFTESGSHGWLVGGRGTILETDDGGITW 76 (339)
T ss_pred CCcceeeeccccCcccceeEeecCcceEEEcCcceEEEecCCcccc
Confidence 4456778889877788999999999899766677777776655444
No 389
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=49.33 E-value=2e+02 Score=25.95 Aligned_cols=170 Identities=14% Similarity=0.129 Sum_probs=69.5
Q ss_pred CceEEE-cCCCC-eeE-EEecC-CEEEEEEcCCCCeE-EeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEE
Q 019290 37 PESLAF-DCNGE-GPY-VGVSD-GRILKWKAANSGWT-EFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLY 111 (343)
Q Consensus 37 p~~l~~-d~~g~-~l~-~~~~~-g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~ 111 (343)
+..+.. ..+|. .|+ ..... ..|..+|.+++++. .+...-. | +...+.+.+.... .+.+|
T Consensus 44 ~~~l~~~~~~~~~yL~f~n~~~~~~i~~~Dl~~~~l~~~i~~eke--------G------pngi~~~~~~~~~--~Dsi~ 107 (333)
T PF13970_consen 44 SYYLQSFSSDGKKYLYFLNNYKSHSIDIYDLDSGKLVKKIPFEKE--------G------PNGIGRPFGFFQN--LDSIF 107 (333)
T ss_dssp -SSEEEEEETTEEEEEEEE-ST--EEEEEETTTTEEEEEEE-BSS--------S------TTB-TT---EEES--SSTTS
T ss_pred cccEEEEEcCCcEEEEEEcCCCcceEEEEECCCCceeeeeeeeeE--------C------CCCccccccceEc--CCceE
Confidence 444432 44554 332 33344 78999999887644 3321110 0 1223345565533 33434
Q ss_pred EEeC--CCeEEEEeCCCCeEEEccccc---CCCC---ccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceE
Q 019290 112 IADA--YFGLMVVGPNGGQAQQLASSA---GGIP---FRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRL 183 (343)
Q Consensus 112 v~~~--~~gi~~~d~~~~~~~~~~~~~---~~~~---~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v 183 (343)
+... ..+++.+|.++...+.+.... ...+ ....+..+.-+ ++.+|++..- ..+. ........-.+
T Consensus 108 l~~~~~~~~l~~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~-----~~~~~~~~~~~ 180 (333)
T PF13970_consen 108 LFNSYAFPKLFLFNSQGEVLKKIDLEEEDLEFEPSEFPSFSNSPIFIK-DNKLYFSQPY-HYPF-----NGDFIEKIPVL 180 (333)
T ss_dssp EEEEGGGTEEEEE-TT--EEEEEE---TTS-------BTTTTB--EEE-TTEEEEE----SSS-------GGGGGGSEEE
T ss_pred EEecCCcceEEEEcCCCeEEEEEecccCcccccccccccccccceEeC-CCeEEEeeec-cccc-----ccccccCceEE
Confidence 3322 367999998755544432111 1110 01123444444 4677775431 0000 00001112347
Q ss_pred EEEeCCCCceEEee---cC-C---------CCcceeEEe-cCCCEEEEEEcCCCeEEEEE
Q 019290 184 LKYDPLKKNVTVMY---NG-L---------SFPNGVALS-NNNSFLLLAESATLKILRFW 229 (343)
Q Consensus 184 ~~~d~~~~~~~~~~---~~-~---------~~~~~i~~~-~d~~~lyv~~~~~~~i~~~~ 229 (343)
..+|..+++++.+. .. . .......+. ..++.++++....+.|++++
T Consensus 181 ~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~~~~~iyv~d 240 (333)
T PF13970_consen 181 AIIDLNTKKVKWLPLPYPDKYQKYNINWDGGMFPSYSYNYFKGGKIIISFPADSEIYVYD 240 (333)
T ss_dssp EEEETTT--EEEEEEE--S------SSEEE---EEEEEET-TTTEEEEEETT-SEEEEES
T ss_pred EEEECCCCeEEEEeCCChHHhhhhccccCcceecceeEEEeeCCEEEEecCCCceEEEEC
Confidence 77888877766432 00 0 001122233 36777888888888998877
No 390
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=49.03 E-value=2e+02 Score=25.92 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=23.1
Q ss_pred eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEe
Q 019290 118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTD 160 (343)
Q Consensus 118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~ 160 (343)
.+.+||+.+.+++.+....... ..-..++.- +++||+.-
T Consensus 169 ~v~~YDp~t~~W~~~~~~p~~~--r~~~~~~~~--~~~iyv~G 207 (346)
T TIGR03547 169 NVLSYDPSTNQWRNLGENPFLG--TAGSAIVHK--GNKLLLIN 207 (346)
T ss_pred eEEEEECCCCceeECccCCCCc--CCCceEEEE--CCEEEEEe
Confidence 4889999999888775432211 112233333 37888843
No 391
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=48.98 E-value=1.7e+02 Score=24.92 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=45.2
Q ss_pred CceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec---CCCC----CCce
Q 019290 180 SGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE---MPRF----PDNI 252 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~----p~~i 252 (343)
..+||.-|-..|+-.....+- .---+++....+.++++.+.+..|..||+.-+.. ...+-. ..++ ...+
T Consensus 162 dc~iy~tdc~~g~~~~a~sgh-tghilalyswn~~m~~sgsqdktirfwdlrv~~~---v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGH-TGHILALYSWNGAMFASGSQDKTIRFWDLRVNSC---VNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred cceEEEeecCCCCcceeecCC-cccEEEEEEecCcEEEccCCCceEEEEeeeccce---eeeccCcccCCCcccceeEEE
Confidence 445776665544432211111 1122344444556888888889999998764311 111111 1111 2236
Q ss_pred eeCCCCCEEEEecc
Q 019290 253 KSDSKGEFWIAMNS 266 (343)
Q Consensus 253 ~~d~~G~lwi~~~~ 266 (343)
++||.|++.++.+.
T Consensus 238 ~vdpsgrll~sg~~ 251 (350)
T KOG0641|consen 238 AVDPSGRLLASGHA 251 (350)
T ss_pred EECCCcceeeeccC
Confidence 78999999998776
No 392
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=48.40 E-value=2.6e+02 Score=27.30 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=47.2
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCC-CeEEEEe
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVT-CDLYIAD 114 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-~~l~v~~ 114 (343)
...+|.+..+|.+|-.+..+-++..||+-..+..+. ... ...+.+....|-|.. +++.++.
T Consensus 52 CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs-I~T-----------------gHtaNIFsvKFvP~tnnriv~sg 113 (758)
T KOG1310|consen 52 CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS-IST-----------------GHTANIFSVKFVPYTNNRIVLSG 113 (758)
T ss_pred eecceeecCCCCEEeecCCcceEEeecchhcceeee-eec-----------------ccccceeEEeeeccCCCeEEEec
Confidence 478999999999777888999999999974332221 111 122345666666533 4566554
Q ss_pred CCCe-EEEEeCCC
Q 019290 115 AYFG-LMVVGPNG 126 (343)
Q Consensus 115 ~~~g-i~~~d~~~ 126 (343)
.++. |..+|+..
T Consensus 114 AgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 114 AGDKLIKLFDLDS 126 (758)
T ss_pred cCcceEEEEeccc
Confidence 4443 77788763
No 393
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=48.19 E-value=2.7e+02 Score=27.06 Aligned_cols=80 Identities=16% Similarity=0.115 Sum_probs=43.1
Q ss_pred ceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCC
Q 019290 38 ESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYF 117 (343)
Q Consensus 38 ~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~ 117 (343)
-|+++.+++...|.+..+|.|..|+.. .....+-..- + ..+. ...........+++++....+|..++...
T Consensus 348 l~v~v~~n~~~~ysgg~Dg~I~~w~~p-~n~dp~ds~d--p-~vl~-----~~l~Ghtdavw~l~~s~~~~~Llscs~Dg 418 (577)
T KOG0642|consen 348 LCVVVPSNGEHCYSGGIDGTIRCWNLP-PNQDPDDSYD--P-SVLS-----GTLLGHTDAVWLLALSSTKDRLLSCSSDG 418 (577)
T ss_pred EEEEecCCceEEEeeccCceeeeeccC-CCCCcccccC--c-chhc-----cceeccccceeeeeecccccceeeecCCc
Confidence 588888999999999999999998432 1111000000 0 0000 00111223456788877556677764333
Q ss_pred eEEEEeCCC
Q 019290 118 GLMVVGPNG 126 (343)
Q Consensus 118 gi~~~d~~~ 126 (343)
-++.+++..
T Consensus 419 Tvr~w~~~~ 427 (577)
T KOG0642|consen 419 TVRLWEPTE 427 (577)
T ss_pred eEEeeccCC
Confidence 366665543
No 394
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=48.00 E-value=2.5e+02 Score=26.73 Aligned_cols=102 Identities=12% Similarity=0.066 Sum_probs=55.4
Q ss_pred CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec-CCC---------------CCCceeeCCCCCE--EE
Q 019290 201 SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-MPR---------------FPDNIKSDSKGEF--WI 262 (343)
Q Consensus 201 ~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~---------------~p~~i~~d~~G~l--wi 262 (343)
....-+.++|||+.||+-+ ++.+.+++++.... . .+.+.+ .++ -..=++.++||-+ |+
T Consensus 221 ~~v~qllL~Pdg~~LYv~~--g~~~~v~~L~~r~l-~-~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRT--GSELVVALLDKRSL-Q-IRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred cchHhhEECCCCCEEEEec--CCeEEEEeeccccc-c-hhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 4456678899999999975 46788888764321 1 111111 111 1122567888843 66
Q ss_pred EeccCCCccccccccccccccCCCc-c---cCCCeEEEECCCCCEEEEe
Q 019290 263 AMNSARGKIESNKKTAFCEETAKPW-F---LRDPVGVKFDVNGNVVDVL 307 (343)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~~d~~g~~~~~~ 307 (343)
--...+.. -..+-++|++.-+.-- + ....+-+.++++|+.-..+
T Consensus 297 dvr~~~~p-~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~ 344 (733)
T COG4590 297 DVRRDGQP-HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFY 344 (733)
T ss_pred eeecCCCC-cceeeeccccCcccceeeccccccceEEEEcCCCceeeee
Confidence 54442221 1345566666532221 1 3345666777887764444
No 395
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=47.55 E-value=2.1e+02 Score=25.73 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=84.8
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCC-eEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSG-WTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA 115 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~ 115 (343)
-.+.++.+|+..+-++.++..+..|...+.. +..+- +.........++...+..++|.-+..
T Consensus 13 itchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~h-----------------tls~Hd~~vtgvdWap~snrIvtcs~ 75 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAH-----------------TLSEHDKIVTGVDWAPKSNRIVTCSH 75 (361)
T ss_pred eeeeeecCCCceEEeccCCceEEEEEecCCCCceece-----------------ehhhhCcceeEEeecCCCCceeEccC
Confidence 4688899999877777777788887765544 43321 11122334677888875667777755
Q ss_pred CCeEEEEeC-CCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce-
Q 019290 116 YFGLMVVGP-NGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV- 193 (343)
Q Consensus 116 ~~gi~~~d~-~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~- 193 (343)
.++-|.+.. +++++++......- ......+...|+ .+.++.-++. ..-.|+.|..+..-.
T Consensus 76 drnayVw~~~~~~~WkptlvLlRi--NrAAt~V~WsP~-enkFAVgSga---------------r~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 76 DRNAYVWTQPSGGTWKPTLVLLRI--NRAATCVKWSPK-ENKFAVGSGA---------------RLISVCYYEQENDWWV 137 (361)
T ss_pred CCCccccccCCCCeeccceeEEEe--ccceeeEeecCc-CceEEeccCc---------------cEEEEEEEecccceeh
Confidence 566777766 66666553222110 123456677785 4444433221 123466665442221
Q ss_pred E-EeecC-CCCcceeEEecCCCEEEEEEcCCCeEEEEE
Q 019290 194 T-VMYNG-LSFPNGVALSNNNSFLLLAESATLKILRFW 229 (343)
Q Consensus 194 ~-~~~~~-~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~ 229 (343)
. .+... -+....+.++++.- |..+.+.++..++|.
T Consensus 138 sKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 138 SKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFS 174 (361)
T ss_pred hhhhCCccccceeeeeccCCcc-eecccccCcceeEEE
Confidence 1 11111 13346677777653 444555555555554
No 396
>PRK13616 lipoprotein LpqB; Provisional
Probab=47.42 E-value=3e+02 Score=27.38 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=22.7
Q ss_pred cCCCC-cceeEEecCCCEEEEE-EcCCCeEEEEEccCcc
Q 019290 198 NGLSF-PNGVALSNNNSFLLLA-ESATLKILRFWLQGER 234 (343)
Q Consensus 198 ~~~~~-~~~i~~~~d~~~lyv~-~~~~~~i~~~~~~~~~ 234 (343)
..+.. +..+.+..++. |++. +..+..+++++++|..
T Consensus 493 ~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 493 PGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred cccCCccccceEecCCE-EEEEecCCCCceEEEecCCcc
Confidence 33443 46777877776 5554 4344668899988743
No 397
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.40 E-value=3.8e+02 Score=28.60 Aligned_cols=144 Identities=12% Similarity=0.059 Sum_probs=72.0
Q ss_pred eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcc---cccCCCCccCcceeEEeCCCCeE-EEEeCCccccccccee
Q 019290 98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLA---SSAGGIPFRFTNDLDIDPNTGIV-YFTDSSIYFQRRQYFM 172 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~---~~~~~~~~~~~~~i~~d~~dg~l-~v~~~~~~~~~~~~~~ 172 (343)
+..+.-+-..+++.++...+| |..||.+........ ...... ..+..+.+-+. |.- .|+.
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~--~~Iv~~slq~~-G~~elvSg------------ 1275 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV--EPIVHLSLQRQ-GLGELVSG------------ 1275 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc--ccceeEEeecC-CCcceeee------------
Confidence 344444444567777767777 888887643221110 111111 11455555552 321 2222
Q ss_pred eeeecCCCceEEEEeCCCCceEEee------cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec--
Q 019290 173 SIATGDRSGRLLKYDPLKKNVTVMY------NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE-- 244 (343)
Q Consensus 173 ~~~~~~~~~~v~~~d~~~~~~~~~~------~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-- 244 (343)
...|.|..+|+.....+.+. ..++....+.+++... ++.+.+. +.|-+|++.|+.. ..++....
T Consensus 1276 -----s~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1276 -----SQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQL-NIIKYNPGFM 1347 (1387)
T ss_pred -----ccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhh-cccccCcccc
Confidence 22577888887642222111 1122356777887665 5666554 8899999988644 33332111
Q ss_pred --CCCCCCceeeCCCCCEEEEe
Q 019290 245 --MPRFPDNIKSDSKGEFWIAM 264 (343)
Q Consensus 245 --~~~~p~~i~~d~~G~lwi~~ 264 (343)
..+.+..+++.+..-+..+.
T Consensus 1348 ~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred cCcCCCcceeeecchhHhhhhc
Confidence 11234445566544444443
No 398
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=46.64 E-value=2.3e+02 Score=25.72 Aligned_cols=109 Identities=13% Similarity=0.197 Sum_probs=64.0
Q ss_pred EEeCCCCeEEEEe-CCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCC
Q 019290 102 KFNPVTCDLYIAD-AYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDR 179 (343)
Q Consensus 102 ~~~~~~~~l~v~~-~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~ 179 (343)
+++..+++-+.+. ...| |+.+|+.+++...-.... ...+|.|...|.+-.+.++.+.
T Consensus 98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~gh----G~sINeik~~p~~~qlvls~Sk----------------- 156 (385)
T KOG1034|consen 98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGH----GGSINEIKFHPDRPQLVLSASK----------------- 156 (385)
T ss_pred EecCCCCCeeEEeecceeEEEEEecchhhhccceecc----CccchhhhcCCCCCcEEEEecC-----------------
Confidence 3444334444332 3356 788899887755432221 2468899988853457776654
Q ss_pred CceEEEEeCCCCceEEeecCCC----CcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 180 SGRLLKYDPLKKNVTVMYNGLS----FPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~~~~~~~~----~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
...|-.++.++.....+..+.. ..-.+.++.+|..+.-+. .+.+|..|++..
T Consensus 157 D~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScG-mDhslk~W~l~~ 212 (385)
T KOG1034|consen 157 DHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCG-MDHSLKLWRLNV 212 (385)
T ss_pred CceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccC-CcceEEEEecCh
Confidence 3345566666666555554433 245677888887543333 467888888763
No 399
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=45.71 E-value=2.5e+02 Score=26.13 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=23.8
Q ss_pred CCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 200 LSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 200 ~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
...+..+++.+++..+. +.+..+.++.||+..
T Consensus 123 ~~diydL~Ws~d~~~l~-s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 123 RDDIYDLAWSPDSNFLV-SGSVDNSVRLWDVHA 154 (434)
T ss_pred ccchhhhhccCCCceee-eeeccceEEEEEecc
Confidence 35578899999987554 455678888998764
No 400
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=44.96 E-value=3e+02 Score=26.71 Aligned_cols=99 Identities=13% Similarity=0.145 Sum_probs=53.6
Q ss_pred EEEeCCCeEEEEeCCCC--eEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeC
Q 019290 111 YIADAYFGLMVVGPNGG--QAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDP 188 (343)
Q Consensus 111 ~v~~~~~gi~~~d~~~~--~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 188 (343)
.|+-+..+|+++||+-. ++... ....-..-+..++++.... |.+.++- ..|-|-.||.
T Consensus 531 lvGlS~~svFrIDPR~~gNKi~v~-esKdY~tKn~Fss~~tTes-GyIa~as------------------~kGDirLyDR 590 (776)
T COG5167 531 LVGLSDYSVFRIDPRARGNKIKVV-ESKDYKTKNKFSSGMTTES-GYIAAAS------------------RKGDIRLYDR 590 (776)
T ss_pred EEeecccceEEecccccCCceeee-eehhccccccccccccccC-ceEEEec------------------CCCceeeehh
Confidence 44545678999998632 22211 1111111133455555553 6665532 2456777776
Q ss_pred CCCceEEeecCC-CCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290 189 LKKNVTVMYNGL-SFPNGVALSNNNSFLLLAESATLKILRFWLQ 231 (343)
Q Consensus 189 ~~~~~~~~~~~~-~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~ 231 (343)
-+...+....++ ....++.++.+|+.+.++- ...|...++.
T Consensus 591 ig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 591 IGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred hcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence 544433434333 3467788888998877654 3456666653
No 401
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=43.77 E-value=2.3e+02 Score=25.07 Aligned_cols=86 Identities=13% Similarity=0.189 Sum_probs=51.2
Q ss_pred CCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC-------CCeEEEEeCCCC
Q 019290 55 DGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA-------YFGLMVVGPNGG 127 (343)
Q Consensus 55 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~-------~~gi~~~d~~~~ 127 (343)
..+|+.||..+.+|..+.. ...+.+..|.+.. ++.|+++.. ...+..||.++.
T Consensus 15 C~~lC~yd~~~~qW~~~g~-------------------~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGN-------------------GISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CCEEEEEECCCCEeecCCC-------------------CceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 4579999999888876531 1234567788876 788888732 124888999888
Q ss_pred eEEEccccc-CCCCccCcceeEEeCC-CCeEEEEeC
Q 019290 128 QAQQLASSA-GGIPFRFTNDLDIDPN-TGIVYFTDS 161 (343)
Q Consensus 128 ~~~~~~~~~-~~~~~~~~~~i~~d~~-dg~l~v~~~ 161 (343)
.+..+.... ...+ ..+..+.+... ...+|++-.
T Consensus 75 ~w~~~~~~~s~~ip-gpv~a~~~~~~d~~~~~~aG~ 109 (281)
T PF12768_consen 75 TWSSLGGGSSNSIP-GPVTALTFISNDGSNFWVAGR 109 (281)
T ss_pred eeeecCCcccccCC-CcEEEEEeeccCCceEEEece
Confidence 776664322 1111 12334444221 256887543
No 402
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.23 E-value=1.4e+02 Score=27.77 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=45.3
Q ss_pred cCcceeEEeCCCCe-EEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeecCCCCcceeEEecCCCEEEEEEc
Q 019290 142 RFTNDLDIDPNTGI-VYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYNGLSFPNGVALSNNNSFLLLAES 220 (343)
Q Consensus 142 ~~~~~i~~d~~dg~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~ 220 (343)
..+.++++.+. ++ |.... .....|-.+|..+.....-......+...+++.|.+....+..
T Consensus 194 ~~IrdlafSp~-~~GLl~~a-----------------sl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl 255 (463)
T KOG1645|consen 194 SFIRDLAFSPF-NEGLLGLA-----------------SLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL 255 (463)
T ss_pred hhhhhhccCcc-ccceeeee-----------------ccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec
Confidence 56788888873 44 32211 1134566677765543322222356778888887766555667
Q ss_pred CCCeEEEEEccC
Q 019290 221 ATLKILRFWLQG 232 (343)
Q Consensus 221 ~~~~i~~~~~~~ 232 (343)
.+|.|++||+..
T Consensus 256 ~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 256 QNGMVLVYDMRQ 267 (463)
T ss_pred cCceEEEEEccC
Confidence 789999999864
No 403
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=40.10 E-value=71 Score=18.09 Aligned_cols=20 Identities=10% Similarity=0.260 Sum_probs=13.8
Q ss_pred cceeEEecCCCEEEEEEcCC
Q 019290 203 PNGVALSNNNSFLLLAESAT 222 (343)
Q Consensus 203 ~~~i~~~~d~~~lyv~~~~~ 222 (343)
-...+++|||+.++++....
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT
T ss_pred ccCEEEecCCCEEEEEecCC
Confidence 45567889999888876544
No 404
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.28 E-value=4.6e+02 Score=27.16 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=21.5
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcC
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAA 64 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~ 64 (343)
+.-=++++.+..+++++..|+|+.++-.
T Consensus 26 ~~isc~~s~~~~vvigt~~G~V~~Ln~s 53 (933)
T KOG2114|consen 26 NAISCCSSSTGSVVIGTADGRVVILNSS 53 (933)
T ss_pred CceeEEcCCCceEEEeeccccEEEeccc
Confidence 3444567777778999999999999753
No 405
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=38.33 E-value=2.9e+02 Score=27.91 Aligned_cols=177 Identities=15% Similarity=0.190 Sum_probs=86.1
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC-
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA- 115 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~- 115 (343)
-++|.++.+..++-++..+|.|-.||....+..+ .+......+..+.++| -+... +.+
T Consensus 73 IeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr-------------------tLtgh~~~~~sv~f~P-~~~~~-a~gS 131 (825)
T KOG0267|consen 73 IESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR-------------------TLTGHLLNITSVDFHP-YGEFF-ASGS 131 (825)
T ss_pred ceeeecCcchhhhcccccCCceeeeehhhhhhhh-------------------hhhccccCcceeeecc-ceEEe-cccc
Confidence 5788888888866677888888899987533111 0011112334556666 33322 211
Q ss_pred -CCeEEEEeCC-CCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCce
Q 019290 116 -YFGLMVVGPN-GGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNV 193 (343)
Q Consensus 116 -~~gi~~~d~~-~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 193 (343)
...+-.+|.+ .|-...+ .. ....++-+.+.| +|+ |+.+.+ ....+-.+|...|++
T Consensus 132 tdtd~~iwD~Rk~Gc~~~~-~s----~~~vv~~l~lsP-~Gr-~v~~g~----------------ed~tvki~d~~agk~ 188 (825)
T KOG0267|consen 132 TDTDLKIWDIRKKGCSHTY-KS----HTRVVDVLRLSP-DGR-WVASGG----------------EDNTVKIWDLTAGKL 188 (825)
T ss_pred ccccceehhhhccCceeee-cC----CcceeEEEeecC-CCc-eeeccC----------------Ccceeeeeccccccc
Confidence 1224445543 2222222 11 112355677888 455 554432 123455566655554
Q ss_pred EEeec-CCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCC---CCceeeCCCCCEEEEe
Q 019290 194 TVMYN-GLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRF---PDNIKSDSKGEFWIAM 264 (343)
Q Consensus 194 ~~~~~-~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---p~~i~~d~~G~lwi~~ 264 (343)
..-.. .-.....+.++|- +.|.-.......+..|++.. ++.+...... +.+..++++|+...+.
T Consensus 189 ~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dlet------fe~I~s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 189 SKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLET------FEVISSGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred ccccccccccccccccCch-hhhhccCCCCceeeeeccce------eEEeeccCCccCCceeeeecCCceeeecC
Confidence 32211 1122334445543 33444555566676676532 2233222212 4456678888665553
No 406
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=38.27 E-value=3e+02 Score=24.78 Aligned_cols=93 Identities=12% Similarity=0.112 Sum_probs=51.1
Q ss_pred eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290 118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY 197 (343)
Q Consensus 118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 197 (343)
--..+|.++|.+.......+ .-.+...-.|. .+|.++.+.. - .-++|-|.+.-..+..+.
T Consensus 295 TAnlwDVEtge~v~~LtGHd----~ELtHcstHpt-QrLVvTsSrD-t--------------TFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHD----SELTHCSTHPT-QRLVVTSSRD-T--------------TFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred cceeeeeccCceeccccCcc----hhccccccCCc-ceEEEEeccC-c--------------eeEeccchhhcceeeeec
Confidence 35667878877654433222 22455566674 7887765431 1 223444443333333333
Q ss_pred cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 198 NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 198 ~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
..-.......|..|.+ .++.+.+..|-+|++..
T Consensus 355 GHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRN 387 (481)
T ss_pred ccccceeEEEEecCCc--eeecCCCceEEEeeecc
Confidence 3333445556665543 56777888999999753
No 407
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=38.24 E-value=2.6e+02 Score=31.19 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=33.6
Q ss_pred eeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEE
Q 019290 99 LGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYF 158 (343)
Q Consensus 99 ~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v 158 (343)
.|+..++ +|..|=. +...||.+|+.+..+++... . ....++.+.... ||.+|.
T Consensus 366 Tgv~~~~-~ge~lRl-Hd~~LY~~d~~~~~Wk~~~~-~---~d~~~S~Ls~qg-dG~lYA 418 (1774)
T PF11725_consen 366 TGVHTDP-DGEQLRL-HDDRLYQFDPNTARWKPPPD-K---SDTPFSSLSRQG-DGKLYA 418 (1774)
T ss_pred hccccCC-CCCeEEe-ecCceeeeccccceecCCCC-c---ccchhhhhcccC-CCceEe
Confidence 4565666 5555544 45669999999887775321 1 113356677777 689987
No 408
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=37.57 E-value=98 Score=18.96 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=24.7
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAAN 65 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~ 65 (343)
....+.+.|+.+++-+++.+|.|+.|..+.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 356899999999777899999988887643
No 409
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.63 E-value=2.9e+02 Score=24.05 Aligned_cols=42 Identities=31% Similarity=0.546 Sum_probs=27.1
Q ss_pred cCCCCCCCc-eEEEc-C-CCCeeEEEecCCEEEEEEcCCCCeEEe
Q 019290 30 QLPGVVGPE-SLAFD-C-NGEGPYVGVSDGRILKWKAANSGWTEF 71 (343)
Q Consensus 30 ~~~~~~~p~-~l~~d-~-~g~~l~~~~~~g~i~~~d~~~~~~~~~ 71 (343)
++.+-+.|. -+++. | -|++|-....+|.+..+...++.+++.
T Consensus 51 ~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~ 95 (299)
T KOG1332|consen 51 ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA 95 (299)
T ss_pred EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh
Confidence 334333443 34443 3 488777778899999998888776643
No 410
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=35.34 E-value=3.2e+02 Score=24.31 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=26.2
Q ss_pred ceEEEEeCCCC-----ceEEeec-CC-CCcceeEEecCCCEEEEEEcCCCeEEEEEccCcc
Q 019290 181 GRLLKYDPLKK-----NVTVMYN-GL-SFPNGVALSNNNSFLLLAESATLKILRFWLQGER 234 (343)
Q Consensus 181 ~~v~~~d~~~~-----~~~~~~~-~~-~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~ 234 (343)
|+|+.|+.... +++.+.. .. ..+.+++.- ++.+.++. ++.|+.|+++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcc
Confidence 66766665542 3333221 11 224445443 44455543 6899999988643
No 411
>PRK10115 protease 2; Provisional
Probab=35.19 E-value=5e+02 Score=26.39 Aligned_cols=150 Identities=9% Similarity=0.103 Sum_probs=0.0
Q ss_pred cceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCc--eEEeecCCCCcceeEEecCCCEEEEEEcC
Q 019290 144 TNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKN--VTVMYNGLSFPNGVALSNNNSFLLLAESA 221 (343)
Q Consensus 144 ~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~i~~~~d~~~lyv~~~~ 221 (343)
+..+.+.+++..|.++... .+...-.|+.+|..+|+ ...+.... ..+++.+|++.+|++...
T Consensus 129 l~~~~~Spdg~~la~~~d~-------------~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~~D~~~~~y~~~~ 192 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDF-------------LSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWANDSWTFYYVRKH 192 (686)
T ss_pred EeEEEECCCCCEEEEEecC-------------CCcEEEEEEEEECCCCCCCCccccCcc---eEEEEeeCCCEEEEEEec
Q ss_pred CC-----eEEEEEccCccccccceeeecCCCCCC-ceeeCCCCCEEEEeccCCCccccccccccccccCCCcccCCCeEE
Q 019290 222 TL-----KILRFWLQGERTTYTPQLFAEMPRFPD-NIKSDSKGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGV 295 (343)
Q Consensus 222 ~~-----~i~~~~~~~~~~~~~~~~~~~~~~~p~-~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 295 (343)
.. .||++++.++.. ....++.+...... ......+|+..+....... .+.+.
T Consensus 193 ~~~~~~~~v~~h~lgt~~~-~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~---------------------~~~~~ 250 (686)
T PRK10115 193 PVTLLPYQVWRHTIGTPAS-QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASAT---------------------TSEVL 250 (686)
T ss_pred CCCCCCCEEEEEECCCChh-HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCc---------------------cccEE
Q ss_pred EEC---CCCCEEEEeeCCCCCccCCceeEEEeCCEEEEecCCC
Q 019290 296 KFD---VNGNVVDVLDGNEGNTLNSVSEVQEYGEYLYTGSSVQ 335 (343)
Q Consensus 296 ~~d---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~ 335 (343)
.++ +++........+.+ ....+...++.+|+.+...
T Consensus 251 l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ly~~tn~~ 289 (686)
T PRK10115 251 LLDAELADAEPFVFLPRRKD----HEYSLDHYQHRFYLRSNRH 289 (686)
T ss_pred EEECcCCCCCceEEEECCCC----CEEEEEeCCCEEEEEEcCC
No 412
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=34.12 E-value=4.5e+02 Score=25.59 Aligned_cols=36 Identities=17% Similarity=0.100 Sum_probs=24.0
Q ss_pred CeeeEEEeCCCCeEEEEeCC--CeEEEEeCCCCeEEEc
Q 019290 97 RPLGIKFNPVTCDLYIADAY--FGLMVVGPNGGQAQQL 132 (343)
Q Consensus 97 ~p~gi~~~~~~~~l~v~~~~--~gi~~~d~~~~~~~~~ 132 (343)
.|.-+.++.++..|.+.+.+ +.++++|.+-|++..-
T Consensus 468 dp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvvee 505 (776)
T COG5167 468 DPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEE 505 (776)
T ss_pred ChhhceeecCCcceEEecCCCcccceeeecccceeeeE
Confidence 45555565556677766544 3499999988876543
No 413
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=33.40 E-value=4.3e+02 Score=25.26 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=20.6
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAAN 65 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~ 65 (343)
...-+..+|||+.+|+-+. ..+..++..+
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~ 250 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDK 250 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeecc
Confidence 4567889999998887544 5566666544
No 414
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=32.69 E-value=2e+02 Score=25.26 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=26.0
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEEEcCCCC
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKWKAANSG 67 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~ 67 (343)
+..++.+.+|++++-++..++||..|+-.+..
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~ 284 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLN 284 (323)
T ss_pred CccceEEccCCcEEeecccCCcEEEEEeccCC
Confidence 46889999999977677889999888876643
No 415
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=32.27 E-value=3.2e+02 Score=27.05 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=46.5
Q ss_pred cCCCCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeee-cCCCCCCceeeCCCCCEEEE
Q 019290 198 NGLSFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFA-EMPRFPDNIKSDSKGEFWIA 263 (343)
Q Consensus 198 ~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwi~ 263 (343)
.+.--|.-|||++..+.+-|+...-+.|.+|.+..... .+++.+. +.+-.|.|+++=.|+.+.|-
T Consensus 336 PGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~m-PniQqIqLe~~ERPKGiCFltdklLLil 401 (671)
T PF15390_consen 336 PGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSM-PNIQQIQLESNERPKGICFLTDKLLLIL 401 (671)
T ss_pred ccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccC-CCeeEEEcccCCCCceeeEccCCeEEEE
Confidence 34455788999999998888887789999999875333 4555443 23446999999777765554
No 416
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=31.98 E-value=5.5e+02 Score=26.04 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=54.6
Q ss_pred eeeEEEeCCCCeEEEEeCCCe-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290 98 PLGIKFNPVTCDLYIADAYFG-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
+..+.++. ...|..+....| |-.+|++.++..+ ...+.. ..+..+.+.|- +.+..+.+.
T Consensus 73 IeSl~f~~-~E~LlaagsasgtiK~wDleeAk~vr---tLtgh~-~~~~sv~f~P~-~~~~a~gSt-------------- 132 (825)
T KOG0267|consen 73 IESLTFDT-SERLLAAGSASGTIKVWDLEEAKIVR---TLTGHL-LNITSVDFHPY-GEFFASGST-------------- 132 (825)
T ss_pred ceeeecCc-chhhhcccccCCceeeeehhhhhhhh---hhhccc-cCcceeeeccc-eEEeccccc--------------
Confidence 45677887 555665545566 7778998765332 222211 23455667774 554421111
Q ss_pred cCCCceEEEEeCC-CCceEEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEEEcc
Q 019290 177 GDRSGRLLKYDPL-KKNVTVMYNGLSFPNGVALSNNNSFLLLAESATLKILRFWLQ 231 (343)
Q Consensus 177 ~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~ 231 (343)
...+-.+|.. .|-...+..+....+.+.++|+|+.+ ......+.+-.||+.
T Consensus 133 ---dtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v-~~g~ed~tvki~d~~ 184 (825)
T KOG0267|consen 133 ---DTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWV-ASGGEDNTVKIWDLT 184 (825)
T ss_pred ---cccceehhhhccCceeeecCCcceeEEEeecCCCcee-eccCCcceeeeeccc
Confidence 1122223322 11111112222335677888998732 333334677777764
No 417
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.77 E-value=4.3e+02 Score=24.68 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=14.0
Q ss_pred CcceeEEecCCCEEEEEE
Q 019290 202 FPNGVALSNNNSFLLLAE 219 (343)
Q Consensus 202 ~~~~i~~~~d~~~lyv~~ 219 (343)
...++++++++..||..-
T Consensus 201 gfEglait~d~~~L~~~l 218 (391)
T COG4222 201 GFEGLAITPDGKKLYALL 218 (391)
T ss_pred ceeeEEecCCCceEEEEE
Confidence 357889999998888753
No 418
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=31.28 E-value=16 Score=22.93 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=0.0
Q ss_pred CcccceeeEEeeeeccc
Q 019290 1 MKLLSSFIIFIFPLVFP 17 (343)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (343)
||+.++|+++++++.++
T Consensus 1 Mk~p~~llllvlllGla 17 (56)
T PF08138_consen 1 MKTPIFLLLLVLLLGLA 17 (56)
T ss_dssp -----------------
T ss_pred CcchHHHHHHHHHHHHH
Confidence 88888888877755554
No 419
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.04 E-value=3.9e+02 Score=23.96 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=43.2
Q ss_pred EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCC----CeEEEEeCCCCeEEEc
Q 019290 57 RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAY----FGLMVVGPNGGQAQQL 132 (343)
Q Consensus 57 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~----~gi~~~d~~~~~~~~~ 132 (343)
-|..||.++.++..+....-+. . ..| .+.+..|..++-++.|+++-.. -||+.+|+++|+.+.+
T Consensus 79 HVH~yd~e~~~VrLLWkesih~------~---~~W---aGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L 146 (339)
T PF09910_consen 79 HVHEYDTENDSVRLLWKESIHD------K---TKW---AGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKL 146 (339)
T ss_pred eEEEEEcCCCeEEEEEecccCC------c---ccc---ccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeec
Confidence 4677777666666554322111 0 111 2345678899988899998422 2699999999999988
Q ss_pred ccc
Q 019290 133 ASS 135 (343)
Q Consensus 133 ~~~ 135 (343)
...
T Consensus 147 ~~~ 149 (339)
T PF09910_consen 147 SSN 149 (339)
T ss_pred cCC
Confidence 543
No 420
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=30.85 E-value=3.3e+02 Score=30.49 Aligned_cols=32 Identities=19% Similarity=0.454 Sum_probs=23.0
Q ss_pred CceEEEcCCCCeeEEEecCCEEEEEEcCCCCeEE
Q 019290 37 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTE 70 (343)
Q Consensus 37 p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~~~~~ 70 (343)
..+|..+++|. .| -.++++||.||+.+..|+.
T Consensus 365 LTgv~~~~~ge-~l-RlHd~~LY~~d~~~~~Wk~ 396 (1774)
T PF11725_consen 365 LTGVHTDPDGE-QL-RLHDDRLYQFDPNTARWKP 396 (1774)
T ss_pred hhccccCCCCC-eE-EeecCceeeeccccceecC
Confidence 44666777777 33 3478889999998877764
No 421
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=30.06 E-value=5.4e+02 Score=25.26 Aligned_cols=138 Identities=14% Similarity=0.081 Sum_probs=76.8
Q ss_pred eEEEecCCEEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCe
Q 019290 49 PYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQ 128 (343)
Q Consensus 49 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~ 128 (343)
+..+..+..|..|+..++....- ......+...++++...++.|+.+.....+..+|..+|+
T Consensus 221 ~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 221 FKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred EEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence 66677778888888776533221 012344567788888633444555434458888988887
Q ss_pred EEEcccccCCCCccCccee-EEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEeec-CCCCccee
Q 019290 129 AQQLASSAGGIPFRFTNDL-DIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMYN-GLSFPNGV 206 (343)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~i-~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~i 206 (343)
=....... .+.+ .++- .+...++- .....|..++..++....+.. .....+.+
T Consensus 283 C~~~l~gh-------~stv~~~~~-~~~~~~sg-----------------s~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 283 CTHSLQGH-------TSSVRCLTI-DPFLLVSG-----------------SRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEEecCC-------CceEEEEEc-cCceEeec-----------------cCCceEEEEeccCcceEEEeccccccEEEE
Confidence 55443321 1222 2222 12333321 124457777776666544443 23334555
Q ss_pred EEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 207 ALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 207 ~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.++ +. +.|+.+.++.|-+|++..
T Consensus 338 ~~~--~~-~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 338 QLD--EP-LLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred Eec--CC-EEEEEecCceEEEEEhhh
Confidence 554 44 556667788999999763
No 422
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=29.99 E-value=1.1e+02 Score=17.35 Aligned_cols=13 Identities=8% Similarity=0.010 Sum_probs=10.9
Q ss_pred CCeEEEECCCCCE
Q 019290 291 DPVGVKFDVNGNV 303 (343)
Q Consensus 291 ~~~v~~~d~~g~~ 303 (343)
.+.|+++++.+..
T Consensus 16 ~GTvf~~~~~g~~ 28 (34)
T TIGR03803 16 FGTLYRLSTAGGT 28 (34)
T ss_pred ceeEEEEcCCCCe
Confidence 5789999998876
No 423
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=29.49 E-value=4.3e+02 Score=23.87 Aligned_cols=150 Identities=10% Similarity=-0.028 Sum_probs=74.6
Q ss_pred eeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeE-EeCCCCeEEEEeCCcccccccceeeeee
Q 019290 98 PLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLD-IDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 98 p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~-~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
+.++.+.+ ++|.+. ..+.|+.|+..+. .+.+...... ..|++++ .++..+.-+++=.+
T Consensus 97 I~~V~l~r--~riVvv-l~~~I~VytF~~n-~k~l~~~et~---~NPkGlC~~~~~~~k~~LafPg-------------- 155 (346)
T KOG2111|consen 97 IKAVKLRR--DRIVVV-LENKIYVYTFPDN-PKLLHVIETR---SNPKGLCSLCPTSNKSLLAFPG-------------- 155 (346)
T ss_pred eeeEEEcC--CeEEEE-ecCeEEEEEcCCC-hhheeeeecc---cCCCceEeecCCCCceEEEcCC--------------
Confidence 45677774 566666 4678888876532 2222111111 2245554 23321333332221
Q ss_pred cCCCceEEEEeCCCCce---EEeecCCCCcceeEEecCCCEEEEEEcCCCeEEEE-EccCccccccceeeecCCCCCCce
Q 019290 177 GDRSGRLLKYDPLKKNV---TVMYNGLSFPNGVALSNNNSFLLLAESATLKILRF-WLQGERTTYTPQLFAEMPRFPDNI 252 (343)
Q Consensus 177 ~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~i~~~~d~~~lyv~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~p~~i 252 (343)
...|.|-..|....+. ..+....+....+++..+|. +..+.+..|++.|+ +......+.+.+.-. .......|
T Consensus 156 -~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~iy~i 232 (346)
T KOG2111|consen 156 -FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADIYCI 232 (346)
T ss_pred -CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheEEEE
Confidence 1245566666543333 34444556667788887774 67777777887764 443322112211110 11123446
Q ss_pred eeCCCCCEEEEeccCCCcc
Q 019290 253 KSDSKGEFWIAMNSARGKI 271 (343)
Q Consensus 253 ~~d~~G~lwi~~~~~~~~~ 271 (343)
+++++..+..+..+++...
T Consensus 233 aFSp~~s~LavsSdKgTlH 251 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLH 251 (346)
T ss_pred EeCCCccEEEEEcCCCeEE
Confidence 7788776666666645433
No 424
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=29.46 E-value=86 Score=15.87 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=18.2
Q ss_pred CCceEEEcCCCCeeEEEecCCEEEEE
Q 019290 36 GPESLAFDCNGEGPYVGVSDGRILKW 61 (343)
Q Consensus 36 ~p~~l~~d~~g~~l~~~~~~g~i~~~ 61 (343)
...++.+.+++..+.++..++.+..|
T Consensus 14 ~i~~~~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 14 PVTSVAFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred ceeEEEECCCCCEEEEecCCCeEEEc
Confidence 45678888877766667777766655
No 425
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=28.90 E-value=1.2e+02 Score=29.92 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=29.1
Q ss_pred cCCCCCCCceEEEcCCCCeeEEEecCCEEEEEEcCCC
Q 019290 30 QLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANS 66 (343)
Q Consensus 30 ~~~~~~~p~~l~~d~~g~~l~~~~~~g~i~~~d~~~~ 66 (343)
++|+.+--.++++++||+.+-++..+|.|...|..++
T Consensus 58 p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 58 PIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 4445433469999999998889999999998887664
No 426
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=28.51 E-value=5.4e+02 Score=24.76 Aligned_cols=70 Identities=13% Similarity=-0.021 Sum_probs=43.1
Q ss_pred eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290 118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY 197 (343)
Q Consensus 118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 197 (343)
.|+.+|+.+.++..+.......+...-+.+++.. .++||= +-.+.. ....+.++.||..+-.+..+.
T Consensus 140 ~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g--~~l~vf------GG~~~~-----~~~~ndl~i~d~~~~~W~~~~ 206 (482)
T KOG0379|consen 140 ELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG--TKLVVF------GGIGGT-----GDSLNDLHIYDLETSTWSELD 206 (482)
T ss_pred heEeccCCCCcEEEecCcCCCCCCcccceEEEEC--CEEEEE------CCccCc-----ccceeeeeeeccccccceecc
Confidence 6999999999888765444433334556666665 577772 111110 002456999999887777665
Q ss_pred cCC
Q 019290 198 NGL 200 (343)
Q Consensus 198 ~~~ 200 (343)
...
T Consensus 207 ~~g 209 (482)
T KOG0379|consen 207 TQG 209 (482)
T ss_pred cCC
Confidence 443
No 427
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=28.28 E-value=4.4e+02 Score=23.63 Aligned_cols=53 Identities=15% Similarity=0.048 Sum_probs=37.8
Q ss_pred CceEEEEeCCCCceEEeecCC-CCcceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 180 SGRLLKYDPLKKNVTVMYNGL-SFPNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~~~~~~~-~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
.-.|-..|.++|......++- ...-.+.++|..+.+..+.+.++.|..||+..
T Consensus 167 ~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr 220 (397)
T KOG4283|consen 167 DVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRR 220 (397)
T ss_pred CCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeec
Confidence 345777788888877655432 34556677888887777888889998888753
No 428
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=27.32 E-value=5.4e+02 Score=24.41 Aligned_cols=125 Identities=16% Similarity=0.105 Sum_probs=60.5
Q ss_pred CeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290 97 RPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 97 ~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
...|..+.--++++|.. .++.+|+... .+..+. + ...-+++.+.. -...+.+.
T Consensus 55 vsRG~~~nt~~~~vYrV-~G~kLYqv~~---~vGdI~----G---sgrVsMah~~~-sq~V~i~G--------------- 107 (469)
T PF11134_consen 55 VSRGVQYNTVNDTVYRV-CGNKLYQVAA---EVGDIA----G---SGRVSMAHSGG-SQAVAING--------------- 107 (469)
T ss_pred cccceEEEeeCCeEEEE-ECceeEEeee---eeeeec----C---CceEEEEeCCc-eeEEEEcc---------------
Confidence 34566664336677776 3566777653 122221 1 22334454442 22222221
Q ss_pred cCCCceEEEEeCCCCceEEeecCC-------CCcceeEEecCCCEEEEEEcCCCeEEEEEccCccccccceeeecCCCCC
Q 019290 177 GDRSGRLLKYDPLKKNVTVMYNGL-------SFPNGVALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAEMPRFP 249 (343)
Q Consensus 177 ~~~~~~v~~~d~~~~~~~~~~~~~-------~~~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p 249 (343)
....|+||..+..+.....+- .....+++ .||++++ ....++.+.+-++...........+...++.|
T Consensus 108 ---~~~gYrYdgat~~l~~~~~~~~~p~y~~g~v~Dv~~-~dGryVw-~~pgt~~f~vSdL~D~T~~d~~~~~ytAEsqP 182 (469)
T PF11134_consen 108 ---KLKGYRYDGATKTLSNWPTDEGYPQYDLGDVVDVTR-LDGRYVW-VKPGTGYFFVSDLEDETKPDRYLDFYTAESQP 182 (469)
T ss_pred ---ccceEEEechhhHhhcCCCcCcccccCccceeEEEe-ccceEEE-EeCCCceEEEeecccccCcchhhhhhhhccCC
Confidence 336899997765444332221 11234444 3666544 44455566666665432212223344455668
Q ss_pred Ccee
Q 019290 250 DNIK 253 (343)
Q Consensus 250 ~~i~ 253 (343)
|+|+
T Consensus 183 D~Iv 186 (469)
T PF11134_consen 183 DNIV 186 (469)
T ss_pred CceE
Confidence 8864
No 429
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=27.30 E-value=4.1e+02 Score=23.01 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=36.0
Q ss_pred eEEEeCCCCeEEEEeCCC----e-EEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeC
Q 019290 100 GIKFNPVTCDLYIADAYF----G-LMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDS 161 (343)
Q Consensus 100 gi~~~~~~~~l~v~~~~~----g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~ 161 (343)
+-+|-- -|.||+.+... . .+.+|..+++...+ ......+......|..+|.|..||+=|.
T Consensus 174 ~naFmv-CGvLY~~~s~~~~~~~I~yafDt~t~~~~~~-~i~f~~~~~~~~~l~YNP~dk~LY~wd~ 238 (250)
T PF02191_consen 174 GNAFMV-CGVLYATDSYDTRDTEIFYAFDTYTGKEEDV-SIPFPNPYGNISMLSYNPRDKKLYAWDN 238 (250)
T ss_pred cceeeE-eeEEEEEEECCCCCcEEEEEEECCCCceece-eeeeccccCceEeeeECCCCCeEEEEEC
Confidence 444544 67888876542 2 46788887765433 2222223345667788887778888553
No 430
>PF13964 Kelch_6: Kelch motif
Probab=26.64 E-value=1.5e+02 Score=17.80 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=20.1
Q ss_pred CCeEEEEeCC-------CeEEEEeCCCCeEEEccc
Q 019290 107 TCDLYIADAY-------FGLMVVGPNGGQAQQLAS 134 (343)
Q Consensus 107 ~~~l~v~~~~-------~gi~~~d~~~~~~~~~~~ 134 (343)
++.||+.... +.+++||+++.+++.+..
T Consensus 11 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 45 (50)
T PF13964_consen 11 GGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP 45 (50)
T ss_pred CCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC
Confidence 5677776321 348999999999888753
No 431
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=25.93 E-value=6.5e+02 Score=24.84 Aligned_cols=30 Identities=13% Similarity=-0.008 Sum_probs=25.3
Q ss_pred cceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 203 PNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 203 ~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
..+++++|-.-.++++....|.|..||+..
T Consensus 444 v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 444 VTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred eeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 567889988878888888899999999864
No 432
>PF12275 DUF3616: Protein of unknown function (DUF3616); InterPro: IPR022060 This family of proteins is found in bacteria. Proteins in this family are typically between 335 and 392 amino acids in length. There is a conserved GLRGPV sequence motif.
Probab=25.73 E-value=1.9e+02 Score=26.28 Aligned_cols=18 Identities=22% Similarity=0.595 Sum_probs=13.7
Q ss_pred CCceeeCCCCCEEEEecc
Q 019290 249 PDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 249 p~~i~~d~~G~lwi~~~~ 266 (343)
+.+.+.-+++++|++...
T Consensus 2 ~Sa~~~~~d~~l~va~DE 19 (330)
T PF12275_consen 2 PSAAVQLPDGRLWVASDE 19 (330)
T ss_pred CccceEcCCCeEEEEecC
Confidence 345666778899999877
No 433
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=25.35 E-value=8.4e+02 Score=25.90 Aligned_cols=111 Identities=10% Similarity=0.011 Sum_probs=55.4
Q ss_pred CeeeEEEeCCCCeEEEEeCCCeEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeee
Q 019290 97 RPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIAT 176 (343)
Q Consensus 97 ~p~gi~~~~~~~~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~ 176 (343)
.|..+..- ++.+..+ -+..+..|+..+++.-+. .-. .......+.+.-+.+.++++|.-+
T Consensus 831 av~aL~~f--ngkllA~-In~~vrLye~t~~~eLr~--e~~--~~~~~~aL~l~v~gdeI~VgDlm~------------- 890 (1096)
T KOG1897|consen 831 AVYALVEF--NGKLLAG-INQSVRLYEWTTERELRI--ECN--ISNPIIALDLQVKGDEIAVGDLMR------------- 890 (1096)
T ss_pred ceeehhhh--CCeEEEe-cCcEEEEEEccccceehh--hhc--ccCCeEEEEEEecCcEEEEeeccc-------------
Confidence 34444444 3555544 455566666554421111 100 111122222222237899988642
Q ss_pred cCCCceEEEEeCCCCceEEeecCCCC--cceeEEecCCCEEEEEEcCCCeEEEEEccC
Q 019290 177 GDRSGRLLKYDPLKKNVTVMYNGLSF--PNGVALSNNNSFLLLAESATLKILRFWLQG 232 (343)
Q Consensus 177 ~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~i~~~~d~~~lyv~~~~~~~i~~~~~~~ 232 (343)
+-.+..|+...|.+..++.+... .....+- ++. .|......+.++....+.
T Consensus 891 ---Sitll~y~~~eg~f~evArD~~p~Wmtaveil-~~d-~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 891 ---SITLLQYKGDEGNFEEVARDYNPNWMTAVEIL-DDD-TYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred ---eEEEEEEeccCCceEEeehhhCccceeeEEEe-cCc-eEEeecccccEEEEEecC
Confidence 34577777777777776655433 2333333 333 344444567777776654
No 434
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.95 E-value=6.6e+02 Score=24.58 Aligned_cols=84 Identities=10% Similarity=0.046 Sum_probs=42.9
Q ss_pred CceEEEEeCCCCceEEeecCCCCcceeEEecC--------CCEEEEEEcCCCeEEEEEccCccc--c--ccceeeecCCC
Q 019290 180 SGRLLKYDPLKKNVTVMYNGLSFPNGVALSNN--------NSFLLLAESATLKILRFWLQGERT--T--YTPQLFAEMPR 247 (343)
Q Consensus 180 ~~~v~~~d~~~~~~~~~~~~~~~~~~i~~~~d--------~~~lyv~~~~~~~i~~~~~~~~~~--~--~~~~~~~~~~~ 247 (343)
..+|+.+|.+.|++..-+.-....+-..+.++ .+++.-. .+++|+++|+.-+.. + ...+.|.....
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGL--s~n~vfriDpRv~~~~kl~~~q~kqy~~k~n 432 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGL--SDNSVFRIDPRVQGKNKLAVVQSKQYSTKNN 432 (644)
T ss_pred cCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEee--cCCceEEecccccCcceeeeeeccccccccc
Confidence 46799999988887543321111222222222 2333222 367899999763222 0 11112211111
Q ss_pred CCCceeeCCCCCEEEEecc
Q 019290 248 FPDNIKSDSKGEFWIAMNS 266 (343)
Q Consensus 248 ~p~~i~~d~~G~lwi~~~~ 266 (343)
....+...+|.|-+++..
T Consensus 433 -Fsc~aTT~sG~IvvgS~~ 450 (644)
T KOG2395|consen 433 -FSCFATTESGYIVVGSLK 450 (644)
T ss_pred -cceeeecCCceEEEeecC
Confidence 334566778989888876
No 435
>TIGR00547 lolA periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself.
Probab=24.54 E-value=77 Score=26.52 Aligned_cols=24 Identities=25% Similarity=0.119 Sum_probs=17.5
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeEEE
Q 019290 107 TCDLYIADAYFGLMVVGPNGGQAQQ 131 (343)
Q Consensus 107 ~~~l~v~~~~~gi~~~d~~~~~~~~ 131 (343)
...+.|++ +..++.||++..++..
T Consensus 77 ~~q~iVsd-G~~vw~Ydp~leQvt~ 100 (204)
T TIGR00547 77 DESIIISD-GKTLWFYDPFVEQATA 100 (204)
T ss_pred CceEEEEC-CCEEEEECCCCceeee
Confidence 56777774 6679999998776643
No 436
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=23.85 E-value=5.7e+02 Score=23.40 Aligned_cols=116 Identities=13% Similarity=0.066 Sum_probs=0.0
Q ss_pred EEecCCCEEEEEEcCCCeEEEEEccCccccccceeeec------CCCCCCceeeCCCCCEEEEeccCCCccccccccccc
Q 019290 207 ALSNNNSFLLLAESATLKILRFWLQGERTTYTPQLFAE------MPRFPDNIKSDSKGEFWIAMNSARGKIESNKKTAFC 280 (343)
Q Consensus 207 ~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~p~~i~~d~~G~lwi~~~~~~~~~~~~~~~~~~ 280 (343)
+-+-||+++.+..........+.+..-.. +++..+.- ...++-+|..-..|.+|+++..++..-
T Consensus 138 ~a~fDGe~VLvvsR~~~~pHLLkvsdLK~-g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG~~~S--------- 207 (442)
T PF15416_consen 138 CASFDGEHVLVVSRGTTKPHLLKVSDLKA-GEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSGGKAS--------- 207 (442)
T ss_pred ccCCCCcEEEEEecCCCCceeeehhHhhc-CCccceeeecccccCcccccchhhhcCCeEEEEeccCCCCC---------
Q ss_pred cccCCCcccCCCeEEEEC-CCCCEEEEeeCCCC-------CccCCceeEEEe--CCEEEEecCCCCeEEEEc
Q 019290 281 EETAKPWFLRDPVGVKFD-VNGNVVDVLDGNEG-------NTLNSVSEVQEY--GEYLYTGSSVQPYVVVIK 342 (343)
Q Consensus 281 ~~~~~~~~~~~~~v~~~d-~~g~~~~~~~~~~~-------~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~ 342 (343)
.-.+|.+. |.-+...+.....+ +.-+.++..... +|.+|+|......|+|++
T Consensus 208 ----------PLKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaat~ilR~~ 269 (442)
T PF15416_consen 208 ----------PLKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAATNILRFT 269 (442)
T ss_pred ----------ceEEEEecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCccceEEEEE
No 437
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=23.61 E-value=5.4e+02 Score=26.41 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=39.7
Q ss_pred CCCC--eeEEEecCCEEEEEEcCCC-C-eEE-eeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeCCCe
Q 019290 44 CNGE--GPYVGVSDGRILKWKAANS-G-WTE-FATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFG 118 (343)
Q Consensus 44 ~~g~--~l~~~~~~g~i~~~d~~~~-~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~~~g 118 (343)
.+++ ++|+++..|.|++.-...+ . ... +.... ........+..|.++..++.|||+ +..|
T Consensus 421 ~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEEl--------------qvf~~~~pI~~m~Ls~~~~~LyVg-s~~g 485 (737)
T KOG3611|consen 421 LDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEEL--------------QVFPDAEPIRSMQLSSKRGSLYVG-SRSG 485 (737)
T ss_pred CCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEE--------------eecCCCCceeEEEecccCCeEEEE-ccCc
Confidence 4444 6788999999988643222 1 111 11100 000111235788898867789999 5778
Q ss_pred EEEEeCCC
Q 019290 119 LMVVGPNG 126 (343)
Q Consensus 119 i~~~d~~~ 126 (343)
|..+.+..
T Consensus 486 V~qvpl~~ 493 (737)
T KOG3611|consen 486 VVQVPLAR 493 (737)
T ss_pred EEEeehhH
Confidence 88887643
No 438
>PTZ00486 apyrase Superfamily; Provisional
Probab=23.54 E-value=3.8e+02 Score=24.53 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=34.0
Q ss_pred CCCEEEEeccCCCccccccccccccccCCCcccCCCeEEEECCCCC-EEE--EeeCCCCCccCCce--eEEEeCCEEEEe
Q 019290 257 KGEFWIAMNSARGKIESNKKTAFCEETAKPWFLRDPVGVKFDVNGN-VVD--VLDGNEGNTLNSVS--EVQEYGEYLYTG 331 (343)
Q Consensus 257 ~G~lwi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~-~~~--~~~~~~~~~~~~~~--~~~~~~g~l~i~ 331 (343)
+|+||..+.. .|.|++++-+++ ... .+.+.+|.....+- =+...+++||+|
T Consensus 124 ngkLys~DDr------------------------TGiVy~i~~~~~~~~PwvIL~dGdG~~~kGfK~EWaTVKd~~LyVG 179 (352)
T PTZ00486 124 NGKLYGFDDR------------------------TGIVYEIDIDKKKAYPRHILSDGNGNSDKGMKIEWATVYDDKLYVG 179 (352)
T ss_pred CCEEEEEeCC------------------------ceEEEEEEcCCCcEeeEEEEecCCCCCCCCcceeeEEEECCEEEEe
Confidence 5788888776 568888875443 332 23444443333331 122348999999
Q ss_pred cCCCCe
Q 019290 332 SSVQPY 337 (343)
Q Consensus 332 ~~~~~~ 337 (343)
+.....
T Consensus 180 s~Gkew 185 (352)
T PTZ00486 180 SIGKEF 185 (352)
T ss_pred ccccee
Confidence 987543
No 439
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=23.53 E-value=6.7e+02 Score=24.14 Aligned_cols=110 Identities=7% Similarity=0.015 Sum_probs=60.2
Q ss_pred EEEEEEcCCCCeEEeeecCCCccccccCCCCCcccCCCcCCeeeEEEeCCCCeEEEEeC-------CCeEEEEeCCCCeE
Q 019290 57 RILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADA-------YFGLMVVGPNGGQA 129 (343)
Q Consensus 57 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~~~l~v~~~-------~~gi~~~d~~~~~~ 129 (343)
.|+.||..+.+|........ .+....-+.++.. +..|||-.. .+.++.+|+++-++
T Consensus 140 ~l~~~d~~t~~W~~l~~~~~---------------~P~~r~~Hs~~~~--g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W 202 (482)
T KOG0379|consen 140 ELHSLDLSTRTWSLLSPTGD---------------PPPPRAGHSATVV--GTKLVVFGGIGGTGDSLNDLHIYDLETSTW 202 (482)
T ss_pred heEeccCCCCcEEEecCcCC---------------CCCCcccceEEEE--CCEEEEECCccCcccceeeeeeeccccccc
Confidence 68999999988887643211 1122223555555 456665311 13489999998888
Q ss_pred EEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEe
Q 019290 130 QQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVM 196 (343)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 196 (343)
..+......+.-..-+.+++.. +++|+.-.... .....+-++.+|..+.+...+
T Consensus 203 ~~~~~~g~~P~pR~gH~~~~~~--~~~~v~gG~~~-----------~~~~l~D~~~ldl~~~~W~~~ 256 (482)
T KOG0379|consen 203 SELDTQGEAPSPRYGHAMVVVG--NKLLVFGGGDD-----------GDVYLNDVHILDLSTWEWKLL 256 (482)
T ss_pred eecccCCCCCCCCCCceEEEEC--CeEEEEecccc-----------CCceecceEeeecccceeeec
Confidence 7765433332223445666665 45555322100 000124488888877555533
No 440
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=22.63 E-value=3.2e+02 Score=20.16 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=17.6
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeEE
Q 019290 107 TCDLYIADAYFGLMVVGPNGGQAQ 130 (343)
Q Consensus 107 ~~~l~v~~~~~gi~~~d~~~~~~~ 130 (343)
...||++....|-++|+..++++.
T Consensus 59 ~~QIWlsSpisG~~hf~~~~~~W~ 82 (109)
T PF01491_consen 59 NRQIWLSSPISGPFHFDYDDGKWI 82 (109)
T ss_dssp CTEEEEEETTTEEEEEEEESSSEE
T ss_pred HHHHHHhcccCCceEEEEcCCEEE
Confidence 678999965478788877766654
No 441
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=22.40 E-value=7.4e+02 Score=24.22 Aligned_cols=107 Identities=15% Similarity=0.063 Sum_probs=57.2
Q ss_pred eEEEEeCCCCeEEEcccccCCCCccCcceeEEeCCCCeEEEEeCCcccccccceeeeeecCCCceEEEEeCCCCceEEee
Q 019290 118 GLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDRSGRLLKYDPLKKNVTVMY 197 (343)
Q Consensus 118 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~dg~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 197 (343)
.|++++.+.++++....... +....|..+.|..+|.|=+++....+. .-......+.|+.+|.+-..+-.+.
T Consensus 249 ~I~kf~~~~~~~~y~~sg~V--~G~llnqFsmdE~~G~LRvaTT~~~~~------~~~~~~s~N~lyVLD~~L~~vG~l~ 320 (521)
T PF09826_consen 249 TIYKFALDGGKIEYVGSGSV--PGYLLNQFSMDEYDGYLRVATTSGNWW------WDSEDTSSNNLYVLDEDLKIVGSLE 320 (521)
T ss_pred EEEEEEccCCcEEEEEEEEE--CcEEcccccEeccCCEEEEEEecCccc------ccCCCCceEEEEEECCCCcEeEEcc
Confidence 47777777777665433211 123467788887668877776542110 0001223567999984322222211
Q ss_pred --cCCCCcceeEEecCCCEEEE-EEcCCCeEEEEEccCcc
Q 019290 198 --NGLSFPNGVALSNNNSFLLL-AESATLKILRFWLQGER 234 (343)
Q Consensus 198 --~~~~~~~~i~~~~d~~~lyv-~~~~~~~i~~~~~~~~~ 234 (343)
.......+..|- |...|+ |-....-++++|+..+.
T Consensus 321 ~la~gE~IysvRF~--Gd~~Y~VTFrqvDPLfviDLsdP~ 358 (521)
T PF09826_consen 321 GLAPGERIYSVRFM--GDRAYLVTFRQVDPLFVIDLSDPA 358 (521)
T ss_pred ccCCCceEEEEEEe--CCeEEEEEEeecCceEEEECCCCC
Confidence 122334555554 334555 44445789999987653
No 442
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=22.39 E-value=6.8e+02 Score=26.30 Aligned_cols=54 Identities=9% Similarity=-0.041 Sum_probs=30.7
Q ss_pred eEEEEeCCCCceEEe-ecCCCCcceeEEecCCCEEEE-EEcC----CCeEEEEEccCccc
Q 019290 182 RLLKYDPLKKNVTVM-YNGLSFPNGVALSNNNSFLLL-AESA----TLKILRFWLQGERT 235 (343)
Q Consensus 182 ~v~~~d~~~~~~~~~-~~~~~~~~~i~~~~d~~~lyv-~~~~----~~~i~~~~~~~~~~ 235 (343)
+|...|-++...+.+ .........-+++|||+.+-. +... ...||+-++.+...
T Consensus 330 ~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~ 389 (912)
T TIGR02171 330 NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGS 389 (912)
T ss_pred eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCC
Confidence 566666554444443 222222333457899988755 3322 34699999886544
No 443
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=21.65 E-value=3.7e+02 Score=24.22 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=34.4
Q ss_pred CCCEEEEEEcCC-CeEEEEEccCccccccceeeecCCCCCCce------eeCCCCCEEEEec-cCCCccccccccccccc
Q 019290 211 NNSFLLLAESAT-LKILRFWLQGERTTYTPQLFAEMPRFPDNI------KSDSKGEFWIAMN-SARGKIESNKKTAFCEE 282 (343)
Q Consensus 211 d~~~lyv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i------~~d~~G~lwi~~~-~~~~~~~~~~~~~~~~~ 282 (343)
+.+.|++.+... ..|..+|++.... .. ++..+..| |+|+ .. ....+|+... .
T Consensus 54 ~~~yL~f~n~~~~~~i~~~Dl~~~~l-~~-~i~~ekeG-pngi~~~~~~~~-~~Dsi~l~~~~~---------------- 113 (333)
T PF13970_consen 54 GKKYLYFLNNYKSHSIDIYDLDSGKL-VK-KIPFEKEG-PNGIGRPFGFFQ-NLDSIFLFNSYA---------------- 113 (333)
T ss_dssp TEEEEEEEE-ST--EEEEEETTTTEE-EE-EEE-BSSS-TTB-TT---EEE-SSSTTSEEEEGG----------------
T ss_pred CcEEEEEEcCCCcceEEEEECCCCce-ee-eeeeeeEC-CCCccccccceE-cCCceEEEecCC----------------
Confidence 334555666554 7999999886432 11 12122333 5553 32 2333444442 2
Q ss_pred cCCCcccCCCeEEEECCCCCEEEEee
Q 019290 283 TAKPWFLRDPVGVKFDVNGNVVDVLD 308 (343)
Q Consensus 283 ~~~~~~~~~~~v~~~d~~g~~~~~~~ 308 (343)
...++.+|.+|+....+.
T Consensus 114 --------~~~l~~~n~~G~~~~~~~ 131 (333)
T PF13970_consen 114 --------FPKLFLFNSQGEVLKKID 131 (333)
T ss_dssp --------GTEEEEE-TT--EEEEEE
T ss_pred --------cceEEEEcCCCeEEEEEe
Confidence 237889999998877664
Done!