Query 019292
Match_columns 343
No_of_seqs 166 out of 630
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:16:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2922 Uncharacterized conser 100.0 1.9E-77 4.1E-82 565.6 15.2 298 1-298 15-312 (335)
2 PF05653 Mg_trans_NIPA: Magnes 100.0 3.4E-70 7.5E-75 524.9 23.8 298 1-298 1-298 (300)
3 TIGR03340 phn_DUF6 phosphonate 99.2 3.3E-09 7.2E-14 100.7 22.9 254 8-290 2-281 (281)
4 PRK11453 O-acetylserine/cystei 98.9 1.7E-07 3.7E-12 89.9 20.6 259 10-294 7-289 (299)
5 TIGR00950 2A78 Carboxylate/Ami 98.9 5.2E-07 1.1E-11 83.8 21.4 203 54-287 51-259 (260)
6 TIGR00776 RhaT RhaT L-rhamnose 98.8 1.6E-06 3.4E-11 83.3 21.3 224 50-294 56-290 (290)
7 PRK02971 4-amino-4-deoxy-L-ara 98.8 3.5E-08 7.6E-13 84.2 8.8 115 7-122 2-122 (129)
8 PF06027 DUF914: Eukaryotic pr 98.7 6.2E-06 1.4E-10 80.9 25.2 232 46-298 73-311 (334)
9 PRK15430 putative chlorampheni 98.7 1.6E-06 3.6E-11 83.0 20.4 233 2-266 3-265 (296)
10 PRK11272 putative DMT superfam 98.7 1.9E-06 4.1E-11 82.4 19.9 212 55-295 74-288 (292)
11 PLN00411 nodulin MtN21 family 98.7 4.4E-06 9.5E-11 82.8 21.6 220 63-297 91-333 (358)
12 PRK10532 threonine and homoser 98.6 2E-05 4.3E-10 75.4 24.3 257 4-296 9-285 (293)
13 TIGR00817 tpt Tpt phosphate/ph 98.6 3.4E-06 7.3E-11 80.8 18.5 224 54-298 70-299 (302)
14 PRK11689 aromatic amino acid e 98.5 1.6E-05 3.5E-10 76.2 21.0 260 8-291 5-286 (295)
15 COG2510 Predicted membrane pro 98.5 9.8E-07 2.1E-11 74.7 9.9 110 9-121 5-138 (140)
16 PRK15051 4-amino-4-deoxy-L-ara 98.5 1E-06 2.2E-11 73.2 9.5 101 11-120 5-107 (111)
17 COG0697 RhaT Permeases of the 98.4 7E-05 1.5E-09 69.5 21.9 211 55-293 75-288 (292)
18 PF13536 EmrE: Multidrug resis 98.4 8.6E-07 1.9E-11 73.2 7.7 67 56-123 41-107 (113)
19 PF10639 UPF0546: Uncharacteri 98.3 9.4E-07 2E-11 73.6 5.0 101 20-120 9-112 (113)
20 PF08449 UAA: UAA transporter 98.3 0.00024 5.2E-09 68.4 22.1 224 52-294 67-299 (303)
21 PRK13499 rhamnose-proton sympo 98.2 5.1E-05 1.1E-09 74.7 15.5 287 1-293 1-342 (345)
22 PTZ00343 triose or hexose phos 98.2 0.00029 6.4E-09 69.4 20.8 68 53-121 118-185 (350)
23 PF06800 Sugar_transport: Suga 98.1 0.00022 4.7E-09 68.0 17.8 214 51-289 43-268 (269)
24 TIGR00688 rarD rarD protein. T 98.0 0.00073 1.6E-08 63.1 19.5 62 60-121 80-141 (256)
25 PRK10532 threonine and homoser 98.0 2.4E-05 5.3E-10 74.8 8.6 125 5-130 146-289 (293)
26 TIGR00950 2A78 Carboxylate/Ami 97.7 0.00029 6.3E-09 65.3 10.3 114 4-117 125-259 (260)
27 PLN00411 nodulin MtN21 family 97.6 0.00024 5.2E-09 70.5 9.3 122 5-127 187-333 (358)
28 PRK10452 multidrug efflux syst 97.6 0.00089 1.9E-08 56.5 10.5 73 53-125 33-106 (120)
29 PRK09541 emrE multidrug efflux 97.6 0.00062 1.3E-08 56.6 9.3 75 50-124 29-105 (110)
30 PF04142 Nuc_sug_transp: Nucle 97.5 0.0071 1.5E-07 56.9 16.6 69 58-126 25-93 (244)
31 PF00892 EamA: EamA-like trans 97.5 9E-05 2E-09 60.2 3.4 67 54-120 58-124 (126)
32 PRK11272 putative DMT superfam 97.4 0.00071 1.5E-08 64.6 9.5 117 4-120 147-283 (292)
33 TIGR03340 phn_DUF6 phosphonate 97.4 0.00034 7.3E-09 66.4 7.2 114 6-119 143-280 (281)
34 KOG4510 Permease of the drug/m 97.4 0.00072 1.6E-08 64.2 8.9 266 6-297 37-330 (346)
35 PRK11689 aromatic amino acid e 97.3 0.001 2.2E-08 63.8 8.9 115 6-120 155-285 (295)
36 PRK11453 O-acetylserine/cystei 97.3 0.0021 4.5E-08 61.7 10.3 116 5-120 141-285 (299)
37 COG2510 Predicted membrane pro 97.2 0.0025 5.4E-08 54.3 9.1 77 209-293 63-140 (140)
38 PF00893 Multi_Drug_Res: Small 97.0 0.0039 8.5E-08 50.0 8.0 64 50-113 28-93 (93)
39 PRK10650 multidrug efflux syst 96.9 0.013 2.7E-07 48.7 10.6 72 49-120 33-106 (109)
40 PRK15051 4-amino-4-deoxy-L-ara 96.9 0.021 4.5E-07 47.3 11.6 80 207-293 31-110 (111)
41 COG0697 RhaT Permeases of the 96.8 0.0065 1.4E-07 56.3 8.5 116 6-122 153-287 (292)
42 PRK11431 multidrug efflux syst 96.6 0.0073 1.6E-07 49.8 6.6 71 50-120 28-100 (105)
43 COG2076 EmrE Membrane transpor 96.3 0.01 2.2E-07 49.0 6.0 71 50-120 29-101 (106)
44 PRK02971 4-amino-4-deoxy-L-ara 96.3 0.049 1.1E-06 46.4 10.3 75 216-296 51-126 (129)
45 KOG2234 Predicted UDP-galactos 96.2 0.22 4.9E-06 49.1 15.8 73 54-126 96-168 (345)
46 PRK09541 emrE multidrug efflux 96.1 0.086 1.9E-06 43.8 10.7 80 206-294 26-105 (110)
47 TIGR00776 RhaT RhaT L-rhamnose 95.9 0.033 7.1E-07 53.5 8.2 115 5-121 150-287 (290)
48 PRK11431 multidrug efflux syst 95.9 0.048 1E-06 45.0 8.0 80 205-293 24-103 (105)
49 PRK15430 putative chlorampheni 95.8 0.016 3.5E-07 55.4 5.7 62 61-122 224-285 (296)
50 PF06027 DUF914: Eukaryotic pr 95.5 0.13 2.7E-06 50.9 10.6 126 3-129 164-312 (334)
51 PRK10650 multidrug efflux syst 95.4 0.078 1.7E-06 44.0 7.7 78 205-291 30-107 (109)
52 KOG2765 Predicted membrane pro 95.4 0.73 1.6E-05 46.0 15.5 74 55-128 161-237 (416)
53 COG2962 RarD Predicted permeas 95.3 3 6.5E-05 40.4 20.5 118 3-120 3-142 (293)
54 PRK10452 multidrug efflux syst 95.3 0.3 6.4E-06 41.2 10.8 70 220-295 37-106 (120)
55 PF00893 Multi_Drug_Res: Small 95.2 0.14 3.1E-06 40.9 8.3 66 206-276 25-90 (93)
56 TIGR00817 tpt Tpt phosphate/ph 94.8 0.054 1.2E-06 51.8 5.8 117 4-120 142-291 (302)
57 PF03151 TPT: Triose-phosphate 94.6 0.18 3.8E-06 42.8 8.0 56 64-119 95-150 (153)
58 KOG3912 Predicted integral mem 94.1 0.17 3.7E-06 48.7 7.2 70 54-123 90-159 (372)
59 COG2076 EmrE Membrane transpor 93.6 0.32 6.8E-06 40.2 7.0 78 207-293 27-104 (106)
60 PF13536 EmrE: Multidrug resis 93.2 1.6 3.5E-05 35.6 10.8 67 222-296 44-110 (113)
61 PF06800 Sugar_transport: Suga 92.5 0.68 1.5E-05 44.4 8.6 86 210-298 42-128 (269)
62 KOG1441 Glucose-6-phosphate/ph 92.3 0.69 1.5E-05 45.4 8.5 71 51-122 85-155 (316)
63 PF00892 EamA: EamA-like trans 92.2 0.29 6.3E-06 39.2 5.1 67 218-291 59-125 (126)
64 TIGR00803 nst UDP-galactose tr 92.1 0.64 1.4E-05 42.4 7.8 115 4-118 82-220 (222)
65 KOG1583 UDP-N-acetylglucosamin 91.9 5 0.00011 38.8 13.5 78 51-128 65-143 (330)
66 COG1742 Uncharacterized conser 91.4 1 2.2E-05 37.0 7.2 48 79-127 61-108 (109)
67 COG5006 rhtA Threonine/homoser 91.0 0.53 1.1E-05 44.8 6.0 122 4-127 145-287 (292)
68 PF06379 RhaT: L-rhamnose-prot 90.7 19 0.00041 35.8 18.0 282 1-292 1-340 (344)
69 KOG4314 Predicted carbohydrate 90.0 16 0.00035 33.8 14.7 63 64-127 67-129 (290)
70 PTZ00343 triose or hexose phos 89.8 1.9 4.2E-05 42.5 9.2 50 70-119 296-345 (350)
71 PRK02237 hypothetical protein; 88.3 2 4.3E-05 35.6 6.6 46 80-126 63-108 (109)
72 KOG4831 Unnamed protein [Funct 88.2 0.61 1.3E-05 38.6 3.6 78 43-121 45-124 (125)
73 PF10639 UPF0546: Uncharacteri 86.1 2.7 5.9E-05 35.1 6.5 73 207-289 39-111 (113)
74 COG4975 GlcU Putative glucose 84.8 2 4.3E-05 40.9 5.5 223 48-294 54-287 (288)
75 KOG1580 UDP-galactose transpor 81.7 43 0.00093 32.0 12.9 210 56-288 91-309 (337)
76 PF02694 UPF0060: Uncharacteri 80.7 1.8 3.9E-05 35.8 3.2 46 80-126 61-106 (107)
77 COG4975 GlcU Putative glucose 76.1 2.8 6.2E-05 39.8 3.5 85 208-295 54-139 (288)
78 PF08449 UAA: UAA transporter 74.4 15 0.00032 35.2 8.1 114 6-119 153-294 (303)
79 PF04142 Nuc_sug_transp: Nucle 69.8 34 0.00075 32.1 9.2 109 4-112 111-243 (244)
80 KOG2766 Predicted membrane pro 69.5 2 4.4E-05 41.1 0.8 56 68-123 96-151 (336)
81 COG3169 Uncharacterized protei 67.2 44 0.00095 27.4 7.9 104 2-118 5-111 (116)
82 PRK13499 rhamnose-proton sympo 66.4 39 0.00085 33.6 9.2 69 223-292 84-153 (345)
83 PF01306 LacY_symp: LacY proto 60.5 1.1E+02 0.0025 31.1 11.5 74 81-154 145-231 (412)
84 PF04342 DUF486: Protein of un 57.9 9.3 0.0002 31.6 2.6 92 8-118 3-104 (108)
85 PF03209 PUCC: PUCC protein; 52.6 2.7E+02 0.0059 28.4 15.0 76 223-298 104-182 (403)
86 PF06609 TRI12: Fungal trichot 50.8 2E+02 0.0043 30.8 11.8 199 50-298 194-405 (599)
87 TIGR00803 nst UDP-galactose tr 50.5 1.9E+02 0.0041 26.0 12.2 56 226-288 165-220 (222)
88 COG4858 Uncharacterized membra 47.9 1.6E+02 0.0034 27.1 8.9 90 5-105 123-219 (226)
89 COG5006 rhtA Threonine/homoser 47.8 2.7E+02 0.0058 26.9 17.4 81 205-289 201-282 (292)
90 PF15048 OSTbeta: Organic solu 46.8 17 0.00037 30.9 2.5 43 256-298 20-62 (125)
91 PF07857 DUF1632: CEO family ( 46.7 2.5E+02 0.0054 26.7 10.7 50 247-297 85-139 (254)
92 PF05653 Mg_trans_NIPA: Magnes 44.7 77 0.0017 30.7 7.1 80 46-125 205-295 (300)
93 PF11970 Git3_C: G protein-cou 43.5 39 0.00085 26.1 3.9 50 239-288 13-62 (76)
94 PF04657 DUF606: Protein of un 41.5 56 0.0012 28.0 5.0 35 84-118 99-137 (138)
95 PF04531 Phage_holin_1: Bacter 37.7 2E+02 0.0043 22.5 7.5 23 46-68 6-28 (84)
96 PF06570 DUF1129: Protein of u 36.8 2.5E+02 0.0054 25.4 8.8 87 8-105 112-204 (206)
97 COG2962 RarD Predicted permeas 36.2 2.8E+02 0.006 27.1 9.2 70 207-279 66-135 (293)
98 KOG1581 UDP-galactose transpor 33.6 3.6E+02 0.0077 26.7 9.5 188 60-266 93-293 (327)
99 KOG2765 Predicted membrane pro 33.4 92 0.002 31.5 5.6 118 5-122 245-390 (416)
100 TIGR00688 rarD rarD protein. T 30.1 2.6E+02 0.0056 25.6 7.9 48 229-279 86-133 (256)
101 PF07457 DUF1516: Protein of u 29.8 2.8E+02 0.0062 22.9 7.2 84 208-298 5-91 (110)
102 PF08173 YbgT_YccB: Membrane b 27.8 93 0.002 19.6 3.0 20 4-23 5-24 (28)
103 PF06966 DUF1295: Protein of u 27.6 2.2E+02 0.0048 26.4 7.0 58 6-64 122-186 (235)
104 KOG1442 GDP-fucose transporter 26.4 33 0.00071 33.4 1.2 56 62-117 114-169 (347)
105 KOG4510 Permease of the drug/m 25.3 1.3E+02 0.0029 29.2 5.0 62 223-294 110-171 (346)
106 PF04018 DUF368: Domain of unk 25.1 6E+02 0.013 24.2 9.6 58 222-284 67-124 (257)
107 KOG1580 UDP-galactose transpor 25.0 58 0.0013 31.1 2.5 39 87-125 278-316 (337)
108 PF11368 DUF3169: Protein of u 24.9 4.2E+02 0.0091 24.6 8.4 62 173-234 12-73 (248)
109 PF06157 DUF973: Protein of un 24.4 6.6E+02 0.014 24.3 10.6 58 7-67 47-104 (285)
110 TIGR02106 cyd_oper_ybgT cyd op 24.3 1.2E+02 0.0027 19.4 3.1 20 4-23 5-24 (30)
111 PF08019 DUF1705: Domain of un 23.6 4.6E+02 0.0099 22.5 7.8 68 131-199 55-128 (156)
112 PF05106 Phage_holin_3: Phage 23.5 2.1E+02 0.0046 23.1 5.3 53 132-185 7-59 (100)
113 PF03605 DcuA_DcuB: Anaerobic 22.9 2E+02 0.0044 28.9 6.0 50 77-126 167-243 (364)
114 COG3952 Predicted membrane pro 21.3 4.8E+02 0.01 21.7 7.0 66 223-295 41-106 (113)
115 KOG0475 Cl- channel CLC-3 and 21.2 6E+02 0.013 27.6 9.2 62 92-156 214-278 (696)
116 KOG0569 Permease of the major 20.4 9.9E+02 0.021 24.9 15.8 34 161-194 81-114 (485)
No 1
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.9e-77 Score=565.61 Aligned_cols=298 Identities=66% Similarity=1.116 Sum_probs=293.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhh
Q 019292 1 MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVT 80 (343)
Q Consensus 1 ~~~~~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~~~r~~~~~~~~l~~p~W~~G~~~~~~g~i~~~~Al~~ap~slV~ 80 (343)
|++||++|+++|+.||++++.++++|||+++|+++.+.|++.++++|+++|+||+|++.|++||++||+||+|||+++|+
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVt 94 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVT 94 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhc
Confidence 68999999999999999999999999999999998888999899999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCccCcCCHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 019292 81 PLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLI 160 (343)
Q Consensus 81 Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~~~~~s~~el~~~~~~p~fl~y~~v~~~~~~~Li 160 (343)
|||+++++.|+++|+++||||++..+.+||++|++|++++|.|+|+|++..|++|+|+++++|+|++|+.+.++++++++
T Consensus 95 PLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~~~il~ 174 (335)
T KOG2922|consen 95 PLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILIVLILI 174 (335)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCcchhHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHhHhhcccCcc
Q 019292 161 LYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTA 240 (343)
Q Consensus 161 ~~~~~r~g~~~~l~y~~i~gllg~~tvl~~K~v~~~l~~~~~g~~~~~~~~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a~ 240 (343)
++++||+|++|+++|+.+|+++|++||+++|++++++|++++|++|+.||+||+++++++.|+.+|++||||||+.||++
T Consensus 175 ~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fnts 254 (335)
T KOG2922|consen 175 FFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTS 254 (335)
T ss_pred eeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhccccCCCCC
Q 019292 241 VVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTREPDT 298 (343)
Q Consensus 241 ~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs~~~~~~~ 298 (343)
+|.|+||++||+++|++|.|+|+||++++..++.+++||+.+++.|+++|+++||.+.
T Consensus 255 lV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~ 312 (335)
T KOG2922|consen 255 IVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEI 312 (335)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeeccccc
Confidence 9999999999999999999999999999999999999999999999999999999988
No 2
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=3.4e-70 Score=524.86 Aligned_cols=298 Identities=46% Similarity=0.805 Sum_probs=288.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhh
Q 019292 1 MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVT 80 (343)
Q Consensus 1 ~~~~~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~~~r~~~~~~~~l~~p~W~~G~~~~~~g~i~~~~Al~~ap~slV~ 80 (343)
|.+|+++|+.+|++||+++++|+++|||+++|+++++.|++.++++|++||+||+|+++|++|+++|++||+|||+++||
T Consensus 1 ~~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~ 80 (300)
T PF05653_consen 1 MNTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVA 80 (300)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHH
Confidence 67899999999999999999999999999999987666665567899999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCccCcCCHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 019292 81 PLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLI 160 (343)
Q Consensus 81 Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~~~~~s~~el~~~~~~p~fl~y~~v~~~~~~~Li 160 (343)
|+|++++++|++++++++|||++++|+.|+++|+.|+++++.++|++++.++++|+++++++|+|+.|+.+..++.+.++
T Consensus 81 Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~ 160 (300)
T PF05653_consen 81 PLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILI 160 (300)
T ss_pred HHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHhcccCCCcchhHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHhHhhcccCcc
Q 019292 161 LYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTA 240 (343)
Q Consensus 161 ~~~~~r~g~~~~l~y~~i~gllg~~tvl~~K~v~~~l~~~~~g~~~~~~~~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a~ 240 (343)
++.+||+|++++++|.++||++|++|++++|++++.++++++|+|||.||.+|++++++++|++.|++||||||++||++
T Consensus 161 ~~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~ 240 (300)
T PF05653_consen 161 FFIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTS 240 (300)
T ss_pred HhhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhccccCCCCC
Q 019292 241 VVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTREPDT 298 (343)
Q Consensus 241 ~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs~~~~~~~ 298 (343)
+|+|+||++||++++++|+++||||+++++++++++.+|+++++.||++|+++||.++
T Consensus 241 ~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~~ 298 (300)
T PF05653_consen 241 LVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKEI 298 (300)
T ss_pred EEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchhc
Confidence 9999999999999999999999999999999999999999999999999999999886
No 3
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.22 E-value=3.3e-09 Score=100.74 Aligned_cols=254 Identities=18% Similarity=0.167 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcc-CC-----------C----CCCCCCcccccchhHH---HHHHHHHHHHHHHH
Q 019292 8 GFILAVVSSAFIGSSFIIKKKGLRKAGA-NG-----------A----RAGSGGYGYLLEPLWW---VGMFTMIVGEIANF 68 (343)
Q Consensus 8 Gv~LAl~ss~~~a~g~vlqk~~~~~~~~-~~-----------~----r~~~~~~~~l~~p~W~---~G~~~~~~g~i~~~ 68 (343)
.+.+.+.++++.+...++.||..+++.. .. + +.....++..++..|+ .+.........+..
T Consensus 2 ~~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (281)
T TIGR03340 2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLA 81 (281)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999965443221 00 0 0000011111222221 22333456667788
Q ss_pred HHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCccCcCCHHHHHHHhcChhHHHH
Q 019292 69 VAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLY 148 (343)
Q Consensus 69 ~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~~~~~s~~el~~~~~~p~fl~y 148 (343)
.++..+|.+.++|+...+.++..+++.+++|||+++++|.|++++..|+.++.. ++.++ .+. .+. .+
T Consensus 82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~--~~~~~-~~~---------~g~-~~ 148 (281)
T TIGR03340 82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL--SRFAQ-HRR---------KAY-AW 148 (281)
T ss_pred HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--ccccc-cch---------hHH-HH
Confidence 899999999999999999999999999999999999999999999999987643 22111 111 111 11
Q ss_pred HHHHHHHHHHHHHH-hcccCCCc-----chhHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccc-cchhHHHHHHHHHHH
Q 019292 149 VGSVVAVALVLILY-CAPRYGQT-----NILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQ-AKCIETWIFAMVALT 221 (343)
Q Consensus 149 ~~v~~~~~~~Li~~-~~~r~g~~-----~~l~y~~i~gllg~~tvl~~K~v~~~l~~~~~g~~~-~~~~~~y~~l~~~~~ 221 (343)
... ...+...+. ..++..++ ....+...+.++++.-..... . ..++... ...+..+.++.....
T Consensus 149 ~l~--aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~ 219 (281)
T TIGR03340 149 ALA--AALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLY-----L--KRHGRSMFPYARQILPSATLGGL 219 (281)
T ss_pred HHH--HHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHH-----H--HHhccchhhhHHHHHHHHHHHHH
Confidence 111 111111121 22222111 111222222222211111000 0 0111111 112222333333334
Q ss_pred HHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhc
Q 019292 222 CVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVL 290 (343)
Q Consensus 222 ~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lL 290 (343)
+........++++++.+++.+.+..|. .++++++.|.++++|..+ +. ...|..+++.|++++
T Consensus 220 ~s~l~~~l~~~al~~~~a~~~~~~~~l-~pv~a~l~g~~~lgE~~~--~~----~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 220 MIGGAYALVLWAMTRLPVATVVALRNT-SIVFAVVLGIWFLNERWY--LT----RLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHHHhhCCceEEEeeccc-HHHHHHHHHHHHhCCCcc--HH----HHHHHHHHHHhHHhC
Confidence 444445578899999999999999877 488999999999999543 33 446777788888764
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.92 E-value=1.7e-07 Score=89.90 Aligned_cols=259 Identities=16% Similarity=0.199 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccC---CCCCC---CCCcccc---cch---hHHHHHHHHHHHHHHHHHHHhh-cch
Q 019292 10 ILAVVSSAFIGSSFIIKKKGLRKAGAN---GARAG---SGGYGYL---LEP---LWWVGMFTMIVGEIANFVAYIY-APA 76 (343)
Q Consensus 10 ~LAl~ss~~~a~g~vlqk~~~~~~~~~---~~r~~---~~~~~~l---~~p---~W~~G~~~~~~g~i~~~~Al~~-ap~ 76 (343)
.+++.+.++-+..++..|.+..+.+.. ..|.. .....+. +++ .-..|+........+.+.++.+ .|.
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a 86 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPA 86 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 457777888888888888765432210 11210 0000000 111 1112332222333455666666 477
Q ss_pred hhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCccCcCC-HHHHHHHhcChhHHHHHHHHHH-
Q 019292 77 VLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNS-VQEIWVLATQPAFLLYVGSVVA- 154 (343)
Q Consensus 77 slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~~~~~s-~~el~~~~~~p~fl~y~~v~~~- 154 (343)
....-+.+...++..+++++++|||++++++.|+++.++|+.++.... .++...+ ..++ +.....+
T Consensus 87 ~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~-~~~~~~~~~G~~-----------l~l~aal~ 154 (299)
T PRK11453 87 GLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDS-LNGQHVAMLGFM-----------LTLAAAFS 154 (299)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcccc-CCCcchhHHHHH-----------HHHHHHHH
Confidence 777778888899999999999999999999999999999987765321 1111111 1111 1111111
Q ss_pred HHH--HHHHHhcccCCCcchhHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCcc------ccchhHHH-HHHHHHHHHHHH
Q 019292 155 VAL--VLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLN------QAKCIETW-IFAMVALTCVIT 225 (343)
Q Consensus 155 ~~~--~Li~~~~~r~g~~~~l~y~~i~gllg~~tvl~~K~v~~~l~~~~~g~~------~~~~~~~y-~~l~~~~~~~l~ 225 (343)
..+ ++.-+..++.+......+.....++++.-... .+. ..++.+ ...++..| .++...+.+...
T Consensus 155 ~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~ 227 (299)
T PRK11453 155 WACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFV---ASL----ILDGSATMIHSLVTIDMTTILSLMYLAFVATIV 227 (299)
T ss_pred HHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHH---HHH----HhcCchhhhhhhccCCHHHHHHHHHHHHHHHHH
Confidence 111 11111111111111122221222222211110 000 011111 11233333 334444566777
Q ss_pred HHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhccccC
Q 019292 226 QLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTR 294 (343)
Q Consensus 226 Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs~~~ 294 (343)
+....++++++.++..+.++. ...++++++.|.++++|.- ++. ...|.++++.|+++....+
T Consensus 228 ~~~l~~~~l~~~~a~~~s~~~-~l~Pv~a~~~~~l~lgE~~--~~~----~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 228 GYGIWGTLLGRYETWRVAPLS-LLVPVVGLASAALLLDERL--TGL----QFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHhCCCc--cHH----HHHHHHHHHHHHHHHhcch
Confidence 788899999999998777754 5789999999999999953 344 3577778888888765433
No 5
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.87 E-value=5.2e-07 Score=83.75 Aligned_cols=203 Identities=15% Similarity=0.121 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCccCcCCH
Q 019292 54 WVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSV 133 (343)
Q Consensus 54 ~~G~~~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~~~~~s~ 133 (343)
..|.+...+...+.+.|+.+.|.+.++++..+..+++.+++.+++|||++++++.|+.++++|+.++...+ +.+. +.
T Consensus 51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~--~~~~-~~ 127 (260)
T TIGR00950 51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG--NLSI-NP 127 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC--cccc-cH
Confidence 44555667888889999999999999999999999999999999999999999999999999998765322 1111 10
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHH-hccc----CCCcchhHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccc
Q 019292 134 QEIWVLATQPAFLLYVGSVVAVALVLILY-CAPR----YGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAK 208 (343)
Q Consensus 134 ~el~~~~~~p~fl~y~~v~~~~~~~Li~~-~~~r----~g~~~~l~y~~i~gllg~~tvl~~K~v~~~l~~~~~g~~~~~ 208 (343)
.+.+ +..... ++.-.+. ..++ .+......+. ....+++.. +..- ....+.+...
T Consensus 128 ---------~G~~-~~l~a~--~~~a~~~~~~k~~~~~~~~~~~~~~~-~~~~~~~~~-l~~~-------~~~~~~~~~~ 186 (260)
T TIGR00950 128 ---------AGLL-LGLGSG--ISFALGTVLYKRLVKKEGPELLQFTG-WVLLLGALL-LLPF-------AWFLGPNPQA 186 (260)
T ss_pred ---------HHHH-HHHHHH--HHHHHHHHHHhHHhhcCCchHHHHHH-HHHHHHHHH-HHHH-------HHhcCCCCCc
Confidence 1111 111111 1111111 1111 1111112221 111122111 1111 1112222222
Q ss_pred hhHHHHH-HHHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhh
Q 019292 209 CIETWIF-AMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGT 287 (343)
Q Consensus 209 ~~~~y~~-l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV 287 (343)
++..|.. +...+.+........++++++.++..+..+.+ ..+..+++.+.++++|. .++.+ ..|.++++.|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~ll~~~~~~E~--~~~~~----~~G~~li~~g~ 259 (260)
T TIGR00950 187 LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILAL-AEPLVALLLGLLILGET--LSLPQ----LIGGALIIAAV 259 (260)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH-HHHHHHHHHHHHHhCCC--CCHHH----HHHHHHHHHhc
Confidence 4445532 33333344444446689999999888777765 78888999999999994 34544 45555666664
No 6
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.76 E-value=1.6e-06 Score=83.29 Aligned_cols=224 Identities=11% Similarity=0.175 Sum_probs=140.2
Q ss_pred chhHHHHHHH---HHHHHHHHHHHHhhcchhhhhcchh-hHHHHHHHHHHHHhccccccch----hhhHHHHhhhheeeE
Q 019292 50 EPLWWVGMFT---MIVGEIANFVAYIYAPAVLVTPLGA-LSIIVSAVLAHFMLNEKLQKMG----MLGCLLCVVGSTMIV 121 (343)
Q Consensus 50 ~p~W~~G~~~---~~~g~i~~~~Al~~ap~slV~Plga-~~lv~~~~la~~~l~e~~~~~~----~~G~~lii~G~~~vv 121 (343)
...|..|++. ...|++..+.|.....+++-.|+.. ++++++.+.+.+++||+.++++ +.|++++++|++++.
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 4556668877 8899999999999999999999999 9999999999999999999999 999999999988876
Q ss_pred eecCCccCcCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhccc---CCCcchhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 019292 122 LHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPR---YGQTNILIYIGICSVIGSLTVMSVKAIGIAIK 198 (343)
Q Consensus 122 ~~ap~~~~~~s~~el~~~~~~p~fl~y~~v~~~~~~~Li~~~~~r---~g~~~~l~y~~i~gllg~~tvl~~K~v~~~l~ 198 (343)
...+++.+ .++... .+.=+.+..+..+ ....+...+| ++.......-..+=++++. ++...-. +
T Consensus 136 ~~~~~~~~---~~~~~~---~~~Gi~~~l~sg~--~y~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~----~ 202 (290)
T TIGR00776 136 RSKDKSAG---IKSEFN---FKKGILLLLMSTI--GYLVYVVVAKAFGVDGLSVLLPQAIGMVIGGI-IFNLGHI----L 202 (290)
T ss_pred eccccccc---cccccc---hhhHHHHHHHHHH--HHHHHHHHHHHcCCCcceehhHHHHHHHHHHH-HHHHHHh----c
Confidence 55322221 011000 0111222222211 1111112222 2221111112222223333 2222210 1
Q ss_pred HHhcCccccchhHHHHHHHHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHH
Q 019292 199 LTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELC 278 (343)
Q Consensus 199 ~~~~g~~~~~~~~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~ 278 (343)
. ........|..++..+.. ..+..+...++++.......++.....++.+.+.|+.+++|.. ++.++....+
T Consensus 203 ---~--~~~~~~~~~~~~~~Gi~~-~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~--~~~~~~~~~i 274 (290)
T TIGR00776 203 ---A--KPLKKYAILLNILPGLMW-GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKK--TKREMIAISV 274 (290)
T ss_pred ---c--cchHHHHHHHHHHHHHHH-HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCC--CcceeehhHH
Confidence 1 112222333333344443 5555566677775555566677777779999999999999964 5788999999
Q ss_pred HHHHHHHhhhhccccC
Q 019292 279 GFITVLSGTSVLHSTR 294 (343)
Q Consensus 279 G~~~ii~GV~lLs~~~ 294 (343)
|+++++.|+.+.+..|
T Consensus 275 G~~lIi~~~~l~~~~~ 290 (290)
T TIGR00776 275 GIILIIIAANILGIGK 290 (290)
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999987554
No 7
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.76 E-value=3.5e-08 Score=84.17 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCC--Ccccccch--hHHHHHHHHHHHHHHHHHHHhhcchhhhhcc
Q 019292 7 IGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSG--GYGYLLEP--LWWVGMFTMIVGEIANFVAYIYAPAVLVTPL 82 (343)
Q Consensus 7 iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~~~r~~~~--~~~~l~~p--~W~~G~~~~~~g~i~~~~Al~~ap~slV~Pl 82 (343)
+|.++.+.+.++.+.|.++-|+|.++.++.+.... . ......+| .-+.|+.+++++...+..++...|++...|+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~ 80 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-FIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPL 80 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 47788999999999999999999887653211100 0 01223467 6789999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHH--HhccccccchhhhHHHHhhhheeeEe
Q 019292 83 GALSIIVSAVLAHF--MLNEKLQKMGMLGCLLCVVGSTMIVL 122 (343)
Q Consensus 83 ga~~lv~~~~la~~--~l~e~~~~~~~~G~~lii~G~~~vv~ 122 (343)
-+...++..+.+.. ++||+++.++++|++++++|+.++..
T Consensus 81 ~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 81 LSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99998888888885 79999999999999999999987643
No 8
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.75 E-value=6.2e-06 Score=80.93 Aligned_cols=232 Identities=15% Similarity=0.226 Sum_probs=129.8
Q ss_pred ccccchhHHHHHH--HHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEee
Q 019292 46 GYLLEPLWWVGMF--TMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH 123 (343)
Q Consensus 46 ~~l~~p~W~~G~~--~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ 123 (343)
..+++|+|.-=++ +.+.|+-....||.+-+.+-+|=|...+++++++++.++||||.++.+++|+++|+.|+++++..
T Consensus 73 ~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 73 KVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 3355666643332 35677888889999999999999999999999999999999999999999999999999877654
Q ss_pred cCCccCc--CCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHh--cccCCCcchhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 019292 124 APLEESL--NSVQEIWVLATQPAFLLYVGSVVAVALVLILYC--APRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKL 199 (343)
Q Consensus 124 ap~~~~~--~s~~el~~~~~~p~fl~y~~v~~~~~~~Li~~~--~~r~g~~~~l~y~~i~gllg~~tvl~~K~v~~~l~~ 199 (343)
.-..++. ...+.+.- . .+ +....++..+..+ .+.-++.+...+.+.-|++|..- ....... + +
T Consensus 153 D~~~~~~~~~~~~~i~G----D-ll----~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii-~~iq~~i--l-e 219 (334)
T PF06027_consen 153 DVLSGSDSSSGSNPILG----D-LL----ALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFII-SGIQLAI--L-E 219 (334)
T ss_pred cccccccCCCCCccchh----H-HH----HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-HHHHHHh--e-e
Confidence 3221111 01111110 0 01 0111111111111 11112223344444445544431 1111111 1 0
Q ss_pred HhcCcccc-chhHHHHHHHHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHH
Q 019292 200 TLEGLNQA-KCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELC 278 (343)
Q Consensus 200 ~~~g~~~~-~~~~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~ 278 (343)
.++-..+ -+++...+.+.-..|...=-...+-.++..+++.+.--. ..-..-+++.++.+|++. .++ ....
T Consensus 220 -~~~i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsL-LTsd~~ali~~i~~f~~~--~~~----ly~~ 291 (334)
T PF06027_consen 220 -RSGIESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSL-LTSDFYALIIDIFFFGYK--FSW----LYIL 291 (334)
T ss_pred -hhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHH-HHhhHHHHHHHHHhcCcc--ccH----HHHH
Confidence 0111111 133444433333333332222345566777776444433 344455888899999983 333 3668
Q ss_pred HHHHHHHhhhhccccCCCCC
Q 019292 279 GFITVLSGTSVLHSTREPDT 298 (343)
Q Consensus 279 G~~~ii~GV~lLs~~~~~~~ 298 (343)
|+++++.|+++.+..++++.
T Consensus 292 af~lIiiG~vvy~~~~~~~~ 311 (334)
T PF06027_consen 292 AFALIIIGFVVYNLAESPEE 311 (334)
T ss_pred HHHHHHHHhheEEccCCccc
Confidence 88899999999876655443
No 9
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.73 E-value=1.6e-06 Score=83.03 Aligned_cols=233 Identities=12% Similarity=0.052 Sum_probs=135.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-C--CCC---------------CC-CCCcccccchhHH----HHHH
Q 019292 2 FSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGA-N--GAR---------------AG-SGGYGYLLEPLWW----VGMF 58 (343)
Q Consensus 2 ~~~~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~-~--~~r---------------~~-~~~~~~l~~p~W~----~G~~ 58 (343)
|+++..|..+++.++++.+...+.-|.. .+.+. . ..| .. ...++..++++++ .|..
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV 81 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence 6788899999999999999998887753 11110 0 000 00 0000111223322 4555
Q ss_pred HHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCccCcCCHHHHHH
Q 019292 59 TMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWV 138 (343)
Q Consensus 59 ~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~~~~~s~~el~~ 138 (343)
...+...+.+.++...|.+...-+.....++..+++.+++|||+++++|.|+++..+|++++.. +.. + . +++
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~--~~~-~-~---~~~- 153 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW--TFG-S-L---PII- 153 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH--HcC-C-c---cHH-
Confidence 5667888999999999999999999999999999999999999999999999999999987642 211 1 0 010
Q ss_pred HhcChhHHHHHHHHHHHHHHHHHH-hcccCCCcc-h--hHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCcccc--chhHH
Q 019292 139 LATQPAFLLYVGSVVAVALVLILY-CAPRYGQTN-I--LIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQA--KCIET 212 (343)
Q Consensus 139 ~~~~p~fl~y~~v~~~~~~~Li~~-~~~r~g~~~-~--l~y~~i~gllg~~tvl~~K~v~~~l~~~~~g~~~~--~~~~~ 212 (343)
. + ........+. ..+|..++. . +........++... .+.....+..+. ..+..
T Consensus 154 -------~----l-~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 212 (296)
T PRK15430 154 -------A----L-GLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIY---------LFAIADSSTSHMGQNPMSL 212 (296)
T ss_pred -------H----H-HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH---------HHHHccCCcccccCCcHHH
Confidence 0 0 0111111111 233322111 1 11000011111110 000001111111 11222
Q ss_pred HHHHH-HHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhcccc
Q 019292 213 WIFAM-VALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYS 266 (343)
Q Consensus 213 y~~l~-~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~ 266 (343)
+..+. ..+.+.+.|. ..|+++++.+++.+.+..| ..++.+++.|..+++|.-
T Consensus 213 ~~~~~~~g~~t~i~~~-~~~~a~~~~~a~~~s~~~~-l~Pv~a~~~g~l~l~E~~ 265 (296)
T PRK15430 213 NLLLIAAGIVTTVPLL-CFTAAATRLRLSTLGFFQY-IGPTLMFLLAVTFYGEKP 265 (296)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHHHHcCCC
Confidence 22222 2334455555 8999999999988777765 578889999999999953
No 10
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.71 E-value=1.9e-06 Score=82.39 Aligned_cols=212 Identities=10% Similarity=0.063 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHH-hhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCccCcCCH
Q 019292 55 VGMFTMIVGEIANFVAY-IYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSV 133 (343)
Q Consensus 55 ~G~~~~~~g~i~~~~Al-~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~~~~~s~ 133 (343)
.|......+..+.+.+. ...|....+-+-.+..++..+++++ +|||+++++|.|.++..+|+.++.. +++.+....
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~--~~~~~~~~~ 150 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS--GGNLSGNPW 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc--CcccccchH
Confidence 34444445566667777 8888888888999999999999985 7999999999999999999876532 211111111
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCc-cccchhHH
Q 019292 134 QEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGL-NQAKCIET 212 (343)
Q Consensus 134 ~el~~~~~~p~fl~y~~v~~~~~~~Li~~~~~r~g~~~~l~y~~i~gllg~~tvl~~K~v~~~l~~~~~g~-~~~~~~~~ 212 (343)
.+++- ..... .-.......+|..++.........-.+++..... ... ..++. ....++..
T Consensus 151 G~l~~-----------l~a~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~ 211 (292)
T PRK11272 151 GAILI-----------LIASA-SWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLI---ASL----LSGERLTALPTLSG 211 (292)
T ss_pred HHHHH-----------HHHHH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHH---HHH----HcCCcccccCCHHH
Confidence 12111 11111 0011011233333322211111111222221111 000 01111 12224444
Q ss_pred HHH-HHHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhcc
Q 019292 213 WIF-AMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLH 291 (343)
Q Consensus 213 y~~-l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs 291 (343)
|.. +...+.+........|+++++.+++.+... ....+..+.+.|.++++|. .++. ...|.++++.|+++++
T Consensus 212 ~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~--~t~~----~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 212 FLALGYLAVFGSIIAISAYMYLLRNVRPALATSY-AYVNPVVAVLLGTGLGGET--LSPI----EWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCC--CcHH----HHHHHHHHHHHHHHHH
Confidence 433 333334455566688899999988777666 5678889999999999995 3444 4577788999999887
Q ss_pred ccCC
Q 019292 292 STRE 295 (343)
Q Consensus 292 ~~~~ 295 (343)
..+.
T Consensus 285 ~~~~ 288 (292)
T PRK11272 285 LGKY 288 (292)
T ss_pred HHHh
Confidence 6543
No 11
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.67 E-value=4.4e-06 Score=82.79 Aligned_cols=220 Identities=10% Similarity=0.148 Sum_probs=117.4
Q ss_pred HHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHH------hccccccchhhhHHHHhhhheeeEeecCCc------cCc
Q 019292 63 GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFM------LNEKLQKMGMLGCLLCVVGSTMIVLHAPLE------ESL 130 (343)
Q Consensus 63 g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~------l~e~~~~~~~~G~~lii~G~~~vv~~ap~~------~~~ 130 (343)
.....+.++.+.|++...=+.....++++++++++ +|||+++++++|++++.+|+.++....... ++.
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~ 170 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY 170 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence 34467889999999999999999999999999999 699999999999999999997665422210 000
Q ss_pred CCHHHHH--HHhcChhHHHHHHHHH-HHHHHHHH-HhcccCCCc--chhHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCc
Q 019292 131 NSVQEIW--VLATQPAFLLYVGSVV-AVALVLIL-YCAPRYGQT--NILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGL 204 (343)
Q Consensus 131 ~s~~el~--~~~~~p~fl~y~~v~~-~~~~~Li~-~~~~r~g~~--~~l~y~~i~gllg~~tvl~~K~v~~~l~~~~~g~ 204 (343)
.+..+.. ........+.-....+ ..++.-++ ...+|..++ ....+....+++++.-.... +. . .++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~---~l-~---~~~~ 243 (358)
T PLN00411 171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMI---GL-V---VEKN 243 (358)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHH---HH-H---HccC
Confidence 0000000 0000000010001111 11111111 112221111 11222222223332221111 10 1 1211
Q ss_pred --cc-cchh--HHHHHHHHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHH
Q 019292 205 --NQ-AKCI--ETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCG 279 (343)
Q Consensus 205 --~~-~~~~--~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G 279 (343)
.. ...| ..+.++...+.+.+ -....|+++++-+++.+.. +.-.-++++++.|.++++|.. ++. .++|
T Consensus 244 ~~~~~~~~~~~~~~~i~y~~i~t~l-ay~lw~~~v~~~ga~~as~-~~~L~PV~a~llg~l~LgE~l--t~~----~~iG 315 (358)
T PLN00411 244 NPSVWIIHFDITLITIVTMAIITSV-YYVIHSWTVRHKGPLYLAI-FKPLSILIAVVMGAIFLNDSL--YLG----CLIG 315 (358)
T ss_pred CcccceeccchHHHHHHHHHHHHHH-HHHHHHHHHhccCchHHHH-HHhHHHHHHHHHHHHHhCCCC--cHH----HHHH
Confidence 11 1111 22222222222333 3336899999988876544 445678899999999999953 444 3478
Q ss_pred HHHHHHhhhhccccCCCC
Q 019292 280 FITVLSGTSVLHSTREPD 297 (343)
Q Consensus 280 ~~~ii~GV~lLs~~~~~~ 297 (343)
.++++.|+.+..+.+.+|
T Consensus 316 ~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 316 GILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 888999999887654443
No 12
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.62 E-value=2e-05 Score=75.43 Aligned_cols=257 Identities=14% Similarity=0.104 Sum_probs=139.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC---CCCC--CC--------CCcccccchhH----HHHHHHHHHHHHH
Q 019292 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN---GARA--GS--------GGYGYLLEPLW----WVGMFTMIVGEIA 66 (343)
Q Consensus 4 ~~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~---~~r~--~~--------~~~~~l~~p~W----~~G~~~~~~g~i~ 66 (343)
|...|+.+.+.+.++.+.+.+.-|.+....+.. ..|. +. ..+...+++.| +.|.. +.....+
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~ 87 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYL 87 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHH
Confidence 457789999999999999999999865432210 0010 00 00011122233 45543 4566677
Q ss_pred HHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCccCcCCHHHHHHHhcChhHH
Q 019292 67 NFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFL 146 (343)
Q Consensus 67 ~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~~~~~s~~el~~~~~~p~fl 146 (343)
.+.++.+.|.+...-+.....++..++++ ||.+ ++.+..+++.|+.+++..+.+.++......++-
T Consensus 88 ~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~-------- 153 (293)
T PRK10532 88 FYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLLPLGQDVSHVDLTGAALA-------- 153 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheeeecCCCcccCChHHHHHH--------
Confidence 88899999999887777777777777663 5544 455677778888776533222111111111111
Q ss_pred HHHHHHHHHHHHHHH-HhcccCCCc-chhHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccchhHHHHH-HHHHHHHH
Q 019292 147 LYVGSVVAVALVLIL-YCAPRYGQT-NILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIF-AMVALTCV 223 (343)
Q Consensus 147 ~y~~v~~~~~~~Li~-~~~~r~g~~-~~l~y~~i~gllg~~tvl~~K~v~~~l~~~~~g~~~~~~~~~y~~-l~~~~~~~ 223 (343)
....+....+ ...++..++ ..... ....++++.-... .. ...+.....++..|.. +...+.+.
T Consensus 154 -----l~aa~~~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~l~~---~~-----~~~~~~~~~~~~~~~~~l~lgv~~t 219 (293)
T PRK10532 154 -----LGAGACWAIYILSGQRAGAEHGPATV-AIGSLIAALIFVP---IG-----ALQAGEALWHWSILPLGLAVAILST 219 (293)
T ss_pred -----HHHHHHHHHHHHHHHHHhccCCchHH-HHHHHHHHHHHHH---HH-----HHccCcccCCHHHHHHHHHHHHHHH
Confidence 1111111111 112222111 11111 2223333221110 11 0111122234555533 34555667
Q ss_pred HHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhccccCCC
Q 019292 224 ITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTREP 296 (343)
Q Consensus 224 l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs~~~~~ 296 (343)
..+....|+++++-+++.+.+.. ...++++++.|.++++|. .++.+ ..|.++++.|++...+.+.+
T Consensus 220 ~~~~~l~~~~~~~~~a~~as~~~-~l~Pv~a~l~~~l~lgE~--~~~~~----~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 220 ALPYSLEMIALTRLPTRTFGTLM-SMEPALAAVSGMIFLGET--LTLIQ----WLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHHHHHHhcChhHHHHHH-HhHHHHHHHHHHHHhCCC--CcHHH----HHHHHHHHHHHHHHHhcCCC
Confidence 77888889999999998776664 678899999999999995 34543 45666677777766555433
No 13
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.61 E-value=3.4e-06 Score=80.83 Aligned_cols=224 Identities=16% Similarity=0.131 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCccCcCCH
Q 019292 54 WVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSV 133 (343)
Q Consensus 54 ~~G~~~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~~~~~s~ 133 (343)
..|+. +.+...++..++.+.+++..+=+-+...+++++++++++|||++++.+.|.+++++|+.+.. ..+.+....
T Consensus 70 ~~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~---~~~~~~~~~ 145 (302)
T TIGR00817 70 PVAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS---DTELSFNWA 145 (302)
T ss_pred HHHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc---CCcccccHH
Confidence 34555 46777789999999999999999999999999999999999999999999999999997542 222211111
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHH--Hhcc--cCCCcchhHHHHHHHhhhHHHHHH-HHHHHHHHHHHhcCccccc
Q 019292 134 QEIWVLATQPAFLLYVGSVVAVALVLIL--YCAP--RYGQTNILIYIGICSVIGSLTVMS-VKAIGIAIKLTLEGLNQAK 208 (343)
Q Consensus 134 ~el~~~~~~p~fl~y~~v~~~~~~~Li~--~~~~--r~g~~~~l~y~~i~gllg~~tvl~-~K~v~~~l~~~~~g~~~~~ 208 (343)
.+++. ........+..++ +..+ ++.......|....+.+.-.-... ............+......
T Consensus 146 G~~~~----------l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T TIGR00817 146 GFLSA----------MISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVN 215 (302)
T ss_pred HHHHH----------HHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccC
Confidence 11111 0011111111110 1111 222223344443322211110100 0000000000000000000
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhh
Q 019292 209 CIETWIFA-MVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGT 287 (343)
Q Consensus 209 ~~~~y~~l-~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV 287 (343)
....|... .....+.......-+.++++-+++...-. ..+-++++++.|.++++|. .++. ..+|.++++.|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~-~~l~pv~~~~~~~~~lge~--lt~~----~~~G~~lil~Gv 288 (302)
T TIGR00817 216 VTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVG-NCMKRVVVIVVSILFFGTK--ISPQ----QVFGTGIAIAGV 288 (302)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHH-hhhhhhheeeeehhhcCCC--Cchh----HHHHHHHHHHHH
Confidence 01123212 22222322222233457887776554444 6677888999999999994 4454 346777899999
Q ss_pred hhccccCCCCC
Q 019292 288 SVLHSTREPDT 298 (343)
Q Consensus 288 ~lLs~~~~~~~ 298 (343)
++-++.|..++
T Consensus 289 ~l~~~~k~~~~ 299 (302)
T TIGR00817 289 FLYSRVKAQKP 299 (302)
T ss_pred HHHHHHhccCc
Confidence 99887766554
No 14
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.54 E-value=1.6e-05 Score=76.15 Aligned_cols=260 Identities=13% Similarity=0.097 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccC---CCCCCC--------CCcccccc---hhHHHHHHHHHHHHHHHHHHHhh
Q 019292 8 GFILAVVSSAFIGSSFIIKKKGLRKAGAN---GARAGS--------GGYGYLLE---PLWWVGMFTMIVGEIANFVAYIY 73 (343)
Q Consensus 8 Gv~LAl~ss~~~a~g~vlqk~~~~~~~~~---~~r~~~--------~~~~~l~~---p~W~~G~~~~~~g~i~~~~Al~~ 73 (343)
+..+++.+.++-+..+...|.+....+.- ..|-.. ..++..++ +....|.+.+.....+.+.++.+
T Consensus 5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~ 84 (295)
T PRK11689 5 ATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGY 84 (295)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45667777888888888888765432210 011000 00011111 12223333333444455555544
Q ss_pred ----cchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCccCcCCHHHHHHHh-cChhHHHH
Q 019292 74 ----APAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLA-TQPAFLLY 148 (343)
Q Consensus 74 ----ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~~~~~s~~el~~~~-~~p~fl~y 148 (343)
.|.+...-+..+..++..+++++++|||++++++.|+++...|++++....+. .+.++.+... .++ ..+
T Consensus 85 ~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~----~~~~~~~~~~~~~~--~G~ 158 (295)
T PRK11689 85 ANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNG----LSLAELINNIASNP--LSY 158 (295)
T ss_pred hhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCcc----chhhhhhhccccCh--HHH
Confidence 35555566778889999999999999999999999999999999877643211 0111110000 001 111
Q ss_pred HHHHHHHHHHHHH-HhcccCCC-cchhHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCc-cccchhHHHHHHHHHHHHHHH
Q 019292 149 VGSVVAVALVLIL-YCAPRYGQ-TNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGL-NQAKCIETWIFAMVALTCVIT 225 (343)
Q Consensus 149 ~~v~~~~~~~Li~-~~~~r~g~-~~~l~y~~i~gllg~~tvl~~K~v~~~l~~~~~g~-~~~~~~~~y~~l~~~~~~~l~ 225 (343)
........+...+ ...+|..+ .+...+.. ..++..... .. .+++. ..-.++..|..++....+...
T Consensus 159 ~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~----~~----~~~~~~~~~~~~~~~~~l~~~~~~t~~ 227 (295)
T PRK11689 159 GLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWI----KY----FLSPQPAMVFSLPAIIKLLLAAAAMGF 227 (295)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHH----HH----HHhcCccccCCHHHHHHHHHHHHHHHH
Confidence 1111111111111 12233222 12222111 111111110 00 11221 112234444433333233333
Q ss_pred HHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhcc
Q 019292 226 QLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLH 291 (343)
Q Consensus 226 Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs 291 (343)
-..+.|+++++.+++.+.+.. -..++++++.|.++++|.- ++. ...|.++++.|+++..
T Consensus 228 ~~~l~~~al~~~~a~~~s~~~-~l~Pv~a~i~~~~~lgE~~--~~~----~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 228 GYAAWNVGILHGNMTLLATAS-YFTPVLSAALAALLLSTPL--SFS----FWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHHHHHccCHHHHHHHH-HhHHHHHHHHHHHHhCCCC--cHH----HHHHHHHHHHhHHHHh
Confidence 344679999999988666655 5678899999999999953 343 4467777888877654
No 15
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.50 E-value=9.8e-07 Score=74.69 Aligned_cols=110 Identities=25% Similarity=0.358 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcc---------------------CCCCCCCCCcccccchhHHHHH---HHHHHHH
Q 019292 9 FILAVVSSAFIGSSFIIKKKGLRKAGA---------------------NGARAGSGGYGYLLEPLWWVGM---FTMIVGE 64 (343)
Q Consensus 9 v~LAl~ss~~~a~g~vlqk~~~~~~~~---------------------~~~r~~~~~~~~l~~p~W~~G~---~~~~~g~ 64 (343)
.+.|+.|++|.++..++-|-|.+.... .+.-.. ..-...+.|..=+ +.-.++-
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~---~~~~~~k~~lflilSGla~glsw 81 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQA---GGEIGPKSWLFLILSGLAGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceec---ccccCcceehhhhHHHHHHHHHH
Confidence 567899999999999999998763211 011100 0112233342211 3345677
Q ss_pred HHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeE
Q 019292 65 IANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (343)
Q Consensus 65 i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv 121 (343)
.+.|.|+.-++++.|.|+-..+.++..+++..+||||++..+|+|+.++++|++++.
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 788999999999999999999999999999999999999999999999999998764
No 16
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.48 E-value=1e-06 Score=73.21 Aligned_cols=101 Identities=14% Similarity=0.210 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHH--HHHHHHHHHHHHHHhhcchhhhhcchhhHHH
Q 019292 11 LAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGM--FTMIVGEIANFVAYIYAPAVLVTPLGALSII 88 (343)
Q Consensus 11 LAl~ss~~~a~g~vlqk~~~~~~~~~~~r~~~~~~~~l~~p~W~~G~--~~~~~g~i~~~~Al~~ap~slV~Plga~~lv 88 (343)
+-+.|.++-..|.+..|++.+..+. + ... .++.++.+. ..+.++..+...++...|++...|+-+++.+
T Consensus 5 ~l~~ai~~ev~g~~~lK~s~~~~~~-----~---~~~-~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v 75 (111)
T PRK15051 5 TLVFASLLSVAGQLCQKQATRPVAI-----G---KRR-KHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFV 75 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCc-----c---hhh-hHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 3445566677788888887333221 0 111 133445555 5578889999999999999999999999999
Q ss_pred HHHHHHHHHhccccccchhhhHHHHhhhheee
Q 019292 89 VSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (343)
Q Consensus 89 ~~~~la~~~l~e~~~~~~~~G~~lii~G~~~v 120 (343)
++.+++++++|||++.++++|+++++.|++++
T Consensus 76 ~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 76 WVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998765
No 17
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.43 E-value=7e-05 Score=69.52 Aligned_cols=211 Identities=17% Similarity=0.229 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHH-HHhccccccchhhhHHHHhhhheeeEeecCCccCcCCH
Q 019292 55 VGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAH-FMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSV 133 (343)
Q Consensus 55 ~G~~~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~-~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~~~~~s~ 133 (343)
.|......+..+.+.++...|....+++...+.++..+++. +++|||+++++|.|..+...|+.++......+......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~ 154 (292)
T COG0697 75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLL 154 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHH
Confidence 34444667778899999999999999999999999999998 77799999999999999999987775543333221001
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHhhhHHHHHHHHHHHHHHHH-HhcCccccchhHH
Q 019292 134 QEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKL-TLEGLNQAKCIET 212 (343)
Q Consensus 134 ~el~~~~~~p~fl~y~~v~~~~~~~Li~~~~~r~g~~~~l~y~~i~gllg~~tvl~~K~v~~~l~~-~~~g~~~~~~~~~ 212 (343)
.++ +........ .+.....++..+......... .... ......-. .....+....+..
T Consensus 155 g~~-----------~~l~a~~~~-a~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~ 213 (292)
T COG0697 155 GLL-----------LALAAALLW-ALYTALVKRLSRLGPVTLALL------LQLL---LALLLLLLFFLSGFGAPILSRA 213 (292)
T ss_pred HHH-----------HHHHHHHHH-HHHHHHHHHhcCCChHHHHHH------HHHH---HHHHHHHHHHhccccccCCHHH
Confidence 111 111111111 111111221111111111100 0000 11110000 0111122223333
Q ss_pred HHHHH-HHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhcc
Q 019292 213 WIFAM-VALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLH 291 (343)
Q Consensus 213 y~~l~-~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs 291 (343)
|..+. ..+.+...-....+++++..++..+.|.. ...+..+++.+.++++|.- +..+ ..|..+++.|+.+..
T Consensus 214 ~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~~--~~~~----~~G~~li~~g~~l~~ 286 (292)
T COG0697 214 WLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLS-LLEPVFAALLGVLLLGEPL--SPAQ----LLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHhCCCC--cHHH----HHHHHHHHHHHHHHh
Confidence 33332 23333334555778999999998887776 5677778889999999953 3443 345577888888876
Q ss_pred cc
Q 019292 292 ST 293 (343)
Q Consensus 292 ~~ 293 (343)
..
T Consensus 287 ~~ 288 (292)
T COG0697 287 LR 288 (292)
T ss_pred cc
Confidence 55
No 18
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.42 E-value=8.6e-07 Score=73.22 Aligned_cols=67 Identities=31% Similarity=0.474 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEee
Q 019292 56 GMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH 123 (343)
Q Consensus 56 G~~~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ 123 (343)
|.+...++..+.+.|+.++| ..+.++.+++.+++.+++.+++|||+++++|.|++++.+|++++...
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~ 107 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWS 107 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 34444578889999999999 58999999999999999999999999999999999999999877553
No 19
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.29 E-value=9.4e-07 Score=73.62 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=79.2
Q ss_pred HHHHHHHHhhhhhhccC-CC-CCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhcch-hhHHHHHHHHHHH
Q 019292 20 GSSFIIKKKGLRKAGAN-GA-RAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHF 96 (343)
Q Consensus 20 a~g~vlqk~~~~~~~~~-~~-r~~~~~~~~l~~p~W~~G~~~~~~g~i~~~~Al~~ap~slV~Plg-a~~lv~~~~la~~ 96 (343)
+...-+-|||.+..++. .. +.-.+....++||..++++++...|++..+..++-+|+|+..|+. +++++++++.+++
T Consensus 9 G~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~ 88 (113)
T PF10639_consen 9 GCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWL 88 (113)
T ss_pred cCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHH
Confidence 34445567765443321 10 011133467899999999999999999999999999999999996 9999999999977
Q ss_pred HhccccccchhhhHHHHhhhheee
Q 019292 97 MLNEKLQKMGMLGCLLCVVGSTMI 120 (343)
Q Consensus 97 ~l~e~~~~~~~~G~~lii~G~~~v 120 (343)
+-+|..+++.+.|+.+++.|+.+.
T Consensus 89 lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 89 LGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred hcCcccchhHHHHHHHHHcCeeee
Confidence 777777888899999999998765
No 20
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.28 E-value=0.00024 Score=68.37 Aligned_cols=224 Identities=13% Similarity=0.184 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCccCcC
Q 019292 52 LWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLN 131 (343)
Q Consensus 52 ~W~~G~~~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~~~~~ 131 (343)
.+..+ .+..++..++-.|+.+.|...-+=+-+..++++++++.+++|+|.+++++++++++++|++++.....++++..
T Consensus 67 ~~~~~-~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~ 145 (303)
T PF08449_consen 67 YAILS-FLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSS 145 (303)
T ss_pred HHHHH-HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccccc
Confidence 34444 44557778888999999999999999999999999999999999999999999999999998877655444332
Q ss_pred CHHH-HHHHhcChhHHHHHHHHHHHHH--H-HHH--HhcccCCCc--chhHHHHHHHhhhHHH-HHHHHHHHHHHHHHhc
Q 019292 132 SVQE-IWVLATQPAFLLYVGSVVAVAL--V-LIL--YCAPRYGQT--NILIYIGICSVIGSLT-VMSVKAIGIAIKLTLE 202 (343)
Q Consensus 132 s~~e-l~~~~~~p~fl~y~~v~~~~~~--~-Li~--~~~~r~g~~--~~l~y~~i~gllg~~t-vl~~K~v~~~l~~~~~ 202 (343)
+.++ -+.. +.+ .+.....+ + -.+ +..++++.. ..+.|.-.-++..... ....+ ..+... .+
T Consensus 146 ~~~~~~~~~----G~~---ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~-~~~~~~-~~- 215 (303)
T PF08449_consen 146 NSSSFSSAL----GII---LLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLP-TGEFRS-AI- 215 (303)
T ss_pred ccccccchh----HHH---HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH-hhHhhH-HH-
Confidence 2211 1110 111 11111111 0 001 122234332 2355554444332221 11111 111110 00
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHH
Q 019292 203 GLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFIT 282 (343)
Q Consensus 203 g~~~~~~~~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ 282 (343)
.....||..+..++....+...-..+.+.-.+++++....=+. ..=...+++.+.++|++ +.++.++. |.++
T Consensus 216 -~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~-t~Rk~~sillS~~~f~~--~~~~~~~~----G~~l 287 (303)
T PF08449_consen 216 -RFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVT-TLRKFLSILLSVIIFGH--PLSPLQWI----GIVL 287 (303)
T ss_pred -HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHH-HHHHHHHHHHHHHhcCC--cCChHHHH----HHHH
Confidence 1223677776666666666444445667778888775544433 33466788899999986 56676664 4445
Q ss_pred HHHhhhhccccC
Q 019292 283 VLSGTSVLHSTR 294 (343)
Q Consensus 283 ii~GV~lLs~~~ 294 (343)
++.|+.+=+..|
T Consensus 288 v~~g~~~~~~~~ 299 (303)
T PF08449_consen 288 VFAGIFLYSYAK 299 (303)
T ss_pred hHHHHHHHHHhh
Confidence 666666544333
No 21
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.19 E-value=5.1e-05 Score=74.75 Aligned_cols=287 Identities=14% Similarity=0.121 Sum_probs=154.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc---------------------cCCCCCCCCCccccc---chhHHHH
Q 019292 1 MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAG---------------------ANGARAGSGGYGYLL---EPLWWVG 56 (343)
Q Consensus 1 ~~~~~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~---------------------~~~~r~~~~~~~~l~---~p~W~~G 56 (343)
|+++..+|++..+++.++.+.=.+=|||. ++=+ .-..| +...+++ ...|..+
T Consensus 1 m~~~~~~G~~~~~i~~~~~GS~~~p~K~~-k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~---~f~~~~~~~~~~~~~~~ 76 (345)
T PRK13499 1 MSNAIILGIIWHLIGGASSGSFYAPFKKV-KKWSWETMWSVGGIFSWLILPWLIAALLLP---DFWAYYSSFSGSTLLPV 76 (345)
T ss_pred CCchhHHHHHHHHHHHHHhhccccccccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHhcCHHHHHHH
Confidence 67788999999999999999999999983 2110 00111 1122332 3556666
Q ss_pred HHH---HHHHHHHHHHHHhhcchhhhhcch-hhHHHHHHHHHHHHhcccc---c----cchhhhHHHHhhhheeeEeecC
Q 019292 57 MFT---MIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKL---Q----KMGMLGCLLCVVGSTMIVLHAP 125 (343)
Q Consensus 57 ~~~---~~~g~i~~~~Al~~ap~slV~Plg-a~~lv~~~~la~~~l~e~~---~----~~~~~G~~lii~G~~~vv~~ap 125 (343)
++. -.+|++.++.+..+...|+-.|++ +++++.+.++..++++|=- + ....+|++++++|+++....+.
T Consensus 77 ~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 77 FLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 644 467999999999999999999997 6789999999999988632 3 2346799999999988766443
Q ss_pred CccCcCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHh---------cccCCCcchh-HHHHHHH-hhhHHHHHHHHHHH
Q 019292 126 LEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYC---------APRYGQTNIL-IYIGICS-VIGSLTVMSVKAIG 194 (343)
Q Consensus 126 ~~~~~~s~~el~~~~~~p~fl~y~~v~~~~~~~Li~~~---------~~r~g~~~~l-~y~~i~g-llg~~tvl~~K~v~ 194 (343)
..++..+.||-.+.-...+ +..+.+..+......+.+ .+..|...+- .....++ ++|++..-..=+.-
T Consensus 157 ~k~~~~~~~~~~~~~~~KG-i~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~ 235 (345)
T PRK13499 157 LKERKMGIKKAEEFNLKKG-LILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFI 235 (345)
T ss_pred hcccccccccccccchHhH-HHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222110000000112 222222222111110000 0112211110 0011112 23443222111111
Q ss_pred HHHH-HHhcCccccch-----hHHHHHHHHHHHHHHHHHHHHhHhhccc-Cc--ccccchhHhHHhHHHHHHHHHHhccc
Q 019292 195 IAIK-LTLEGLNQAKC-----IETWIFAMVALTCVITQLNYLNMALDTF-NT--AVVSPIYYAMFTSFTIFASAIMFKDY 265 (343)
Q Consensus 195 ~~l~-~~~~g~~~~~~-----~~~y~~l~~~~~~~l~Q~~~Ln~aL~~~-~a--~~v~P~~~v~~t~~~i~~g~i~f~E~ 265 (343)
.+-| .+.+....+.. +..+++....-+.=..|..+.-.+-+.- .+ ....++-+-...+.+.+.|+ ++|||
T Consensus 236 ~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~ 314 (345)
T PRK13499 236 RLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEW 314 (345)
T ss_pred HHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhc
Confidence 1001 11110112222 4445555544444445543332222211 11 11223333444466777787 59999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhcccc
Q 019292 266 SGQSASSIASELCGFITVLSGTSVLHST 293 (343)
Q Consensus 266 ~~~~~~~~~~~~~G~~~ii~GV~lLs~~ 293 (343)
+..+..+.....+|+++++.|.+++...
T Consensus 315 K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 315 KGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred cCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 9988999999999999999999988654
No 22
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.18 E-value=0.00029 Score=69.43 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeE
Q 019292 53 WWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (343)
Q Consensus 53 W~~G~~~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv 121 (343)
...|+.-. .+..+...++.+.+++..+=+-+.+.+++++++++++|||++++.+.|+++++.|+.+..
T Consensus 118 lp~gl~~~-~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 118 LPQGLCHL-FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHH-HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 34444333 235556689999999999999999999999999999999999999999999999998765
No 23
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.13 E-value=0.00022 Score=68.04 Aligned_cols=214 Identities=13% Similarity=0.211 Sum_probs=126.9
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHhhcchhhhhcch-hhHHHHHHHHHHHHhccccccchh----hhHHHHhhhheeeEe
Q 019292 51 PLWWVGMFT---MIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMGM----LGCLLCVVGSTMIVL 122 (343)
Q Consensus 51 p~W~~G~~~---~~~g~i~~~~Al~~ap~slV~Plg-a~~lv~~~~la~~~l~e~~~~~~~----~G~~lii~G~~~vv~ 122 (343)
..|+.+++. -.+|+++++.++.....|.-.|++ +.+++.|.+.+.++++|--+..++ .+.+++++|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 567777755 468999999999999999999998 899999999999999998887665 488899999887766
Q ss_pred ecCCccCcCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHhhhHHHHHHHHHHHHHHHHHh-
Q 019292 123 HAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTL- 201 (343)
Q Consensus 123 ~ap~~~~~~s~~el~~~~~~p~fl~y~~v~~~~~~~Li~~~~~r~g~~~~l~y~~i~gllg~~tvl~~K~v~~~l~~~~- 201 (343)
...++++..+.++..+ ..+ + +.+..+....|..-||..+-+ +.+.++-++++..+-...
T Consensus 123 ~~~~~~~~~~~~~~~k-----gi~-~--Ll~stigy~~Y~~~~~~~~~~------------~~~~~lPqaiGm~i~a~i~ 182 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKK-----GIL-A--LLISTIGYWIYSVIPKAFHVS------------GWSAFLPQAIGMLIGAFIF 182 (269)
T ss_pred ccccccccccccchhh-----HHH-H--HHHHHHHHHHHHHHHHhcCCC------------hhHhHHHHHHHHHHHHHHH
Confidence 5555444333222221 111 1 111112223344445553322 233333333333222111
Q ss_pred c--CccccchhHHHHHHHHHHHHHHHHH-HHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHH
Q 019292 202 E--GLNQAKCIETWIFAMVALTCVITQL-NYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELC 278 (343)
Q Consensus 202 ~--g~~~~~~~~~y~~l~~~~~~~l~Q~-~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~ 278 (343)
. ..+++.+..+|.=++..+.-.+.=+ +++... .--.+.-.|+-|.. .+.+.++|+.++||.+ +..++....+
T Consensus 183 ~~~~~~~~~~k~~~~nil~G~~w~ignl~~~is~~--~~G~a~af~lSQ~~-vvIStlgGI~il~E~K--t~ke~~~~~~ 257 (269)
T PF06800_consen 183 NLFSKKPFFEKKSWKNILTGLIWGIGNLFYLISAQ--KNGVATAFTLSQLG-VVISTLGGIFILKEKK--TKKEMIYTLI 257 (269)
T ss_pred hhcccccccccchHHhhHHHHHHHHHHHHHHHhHH--hccchhhhhHHhHH-HHHHHhhhheEEEecC--chhhHHHHHH
Confidence 0 0233333344433333332211111 111111 11223344555555 5567889999999976 4678889999
Q ss_pred HHHHHHHhhhh
Q 019292 279 GFITVLSGTSV 289 (343)
Q Consensus 279 G~~~ii~GV~l 289 (343)
|+++++.|.++
T Consensus 258 G~~Liv~G~il 268 (269)
T PF06800_consen 258 GLILIVIGAIL 268 (269)
T ss_pred HHHHHHHhhhc
Confidence 99999888765
No 24
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.04 E-value=0.00073 Score=63.07 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeE
Q 019292 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (343)
Q Consensus 60 ~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv 121 (343)
+..+..+.+.|+...|.+..+-+....-++.++++++++|||+++++|.|+++..+|+++++
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999999999999999999999999999999999999999999987654
No 25
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.98 E-value=2.4e-05 Score=74.85 Aligned_cols=125 Identities=18% Similarity=0.122 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC---CC-----------CCCCCcccccch-----hHHHHHHHHHHHHH
Q 019292 5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGANG---AR-----------AGSGGYGYLLEP-----LWWVGMFTMIVGEI 65 (343)
Q Consensus 5 ~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~~---~r-----------~~~~~~~~l~~p-----~W~~G~~~~~~g~i 65 (343)
..+|.++++.++++.+...++.||..++.+... .. ...+. ....++ .++.|+...+++..
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~lgv~~t~~~~~ 224 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAG-EALWHWSILPLGLAVAILSTALPYS 224 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccC-cccCCHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999998777533221100 00 00000 011121 24566677778888
Q ss_pred HHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCccCc
Q 019292 66 ANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESL 130 (343)
Q Consensus 66 ~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~~~~ 130 (343)
++..++...|++.++++..+..+++.+++.++++|+++..+++|.++++.|+.......++|++.
T Consensus 225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~ 289 (293)
T PRK10532 225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKI 289 (293)
T ss_pred HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999988775555555544
No 26
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.69 E-value=0.00029 Score=65.32 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC---CC--------------CCCCCcccccchhHH----HHHHHHHH
Q 019292 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANG---AR--------------AGSGGYGYLLEPLWW----VGMFTMIV 62 (343)
Q Consensus 4 ~~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~~---~r--------------~~~~~~~~l~~p~W~----~G~~~~~~ 62 (343)
++..|..+++.|+++.+...++.||..++.+... .+ ...+.........|+ .|....++
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTAL 204 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999654322100 00 000011111222332 34444567
Q ss_pred HHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhh
Q 019292 63 GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGS 117 (343)
Q Consensus 63 g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~ 117 (343)
+..+++.++...|++.+..+..+..+++.+++.+++||+++..++.|+++++.|+
T Consensus 205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999999999999999999999986
No 27
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.63 E-value=0.00024 Score=70.46 Aligned_cols=122 Identities=18% Similarity=0.207 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-------------------CCCCCCCcccc--cchhHHHHHHH----
Q 019292 5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGANG-------------------ARAGSGGYGYL--LEPLWWVGMFT---- 59 (343)
Q Consensus 5 ~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~~-------------------~r~~~~~~~~l--~~p~W~~G~~~---- 59 (343)
+.+|.++++.|+++.+.+.++||+-.++-+... ...+.+..... .+. ++..++.
T Consensus 187 ~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~i~y~~i~ 265 (358)
T PLN00411 187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDI-TLITIVTMAII 265 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccch-HHHHHHHHHHH
Confidence 577999999999999999999998654422100 00000000000 111 1112221
Q ss_pred HHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCc
Q 019292 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (343)
Q Consensus 60 ~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~ 127 (343)
..++..++..+....+++.+..+.-+..+++++++..+++|+++..+++|+++++.|+.++.....+|
T Consensus 266 t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 266 TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 22356667778889999999999999999999999999999999999999999999998765443433
No 28
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.57 E-value=0.00089 Score=56.50 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhcc-hhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecC
Q 019292 53 WWVGMFTMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (343)
Q Consensus 53 W~~G~~~~~~g~i~~~~Al~~ap~slV~Pl-ga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap 125 (343)
|+..+.+++++..+...|+...|+++.-|+ .+++.+...+.+.+++||+++..+++|+.+++.|++.+=..++
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 456666788888899999999999999999 5799999999999999999999999999999999987744443
No 29
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.55 E-value=0.00062 Score=56.55 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=63.7
Q ss_pred chhHHH-HHHHHHHHHHHHHHHHhhcchhhhhcc-hhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeec
Q 019292 50 EPLWWV-GMFTMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA 124 (343)
Q Consensus 50 ~p~W~~-G~~~~~~g~i~~~~Al~~ap~slV~Pl-ga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~a 124 (343)
+|.|.. .+.+++++...-..|+...|.++.-|. .+++.+.+.+.+.+++||+++..+++|..+++.|++.+-..+
T Consensus 29 ~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 29 RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 455544 445577778888889999999999999 779999999999999999999999999999999998774433
No 30
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.48 E-value=0.0071 Score=56.94 Aligned_cols=69 Identities=20% Similarity=0.335 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCC
Q 019292 58 FTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (343)
Q Consensus 58 ~~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~ 126 (343)
+++.+.+.+.++++...|++.-|=+...-++++++++.++||+|+++++|++..+.+.|++++-.....
T Consensus 25 ~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 25 LLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 668999999999999999999999999999999999999999999999999999999999887654433
No 31
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.48 E-value=9e-05 Score=60.16 Aligned_cols=67 Identities=25% Similarity=0.465 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheee
Q 019292 54 WVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (343)
Q Consensus 54 ~~G~~~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~v 120 (343)
..|.+...++..+...++...|++.++++..++.+++.+++.+++||+++++++.|+++++.|++++
T Consensus 58 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 58 FLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4455555778889999999999999999999999999999999999999999999999999998754
No 32
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.44 E-value=0.00071 Score=64.65 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC----------------CCCCCCCCcccccchhHH----HHHHHHHHH
Q 019292 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN----------------GARAGSGGYGYLLEPLWW----VGMFTMIVG 63 (343)
Q Consensus 4 ~~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~----------------~~r~~~~~~~~l~~p~W~----~G~~~~~~g 63 (343)
++..|..+++.|+++.+.+.+.+||..++.+.. ..-.+...........|+ .|+...+++
T Consensus 147 ~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~ 226 (292)
T PRK11272 147 GNPWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA 226 (292)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 346799999999999999999988843221100 000000000101112232 344445677
Q ss_pred HHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheee
Q 019292 64 EIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (343)
Q Consensus 64 ~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~v 120 (343)
..++..++...|.+.+..+..+..+++++++.+++||+++..+++|+++++.|+.+.
T Consensus 227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~ 283 (292)
T PRK11272 227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLV 283 (292)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999999999999998765
No 33
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.44 E-value=0.00034 Score=66.45 Aligned_cols=114 Identities=18% Similarity=0.095 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-C-C--C-----C-C---------CCccc-ccchhH----HHHHHHHH
Q 019292 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANG-A-R--A-----G-S---------GGYGY-LLEPLW----WVGMFTMI 61 (343)
Q Consensus 6 ~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~~-~-r--~-----~-~---------~~~~~-l~~p~W----~~G~~~~~ 61 (343)
..|..+++.++++.+.+.++.|+..++.+... . . . . . +.... ...+.| +.+.....
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 222 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIG 222 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence 35777899999999999888887532211100 0 0 0 0 0 00000 011122 22333345
Q ss_pred HHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhhee
Q 019292 62 VGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (343)
Q Consensus 62 ~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~ 119 (343)
++..+++.++...|++.+.++.-++.+++.+++.+++||+++..+++|.++++.|+.+
T Consensus 223 l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 223 GAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 6778889999999999999999999999999999999999999999999999999864
No 34
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.42 E-value=0.00072 Score=64.21 Aligned_cols=266 Identities=22% Similarity=0.321 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccC--CCCC------CCCCcccccchh--------HH--HHHHHHHHHHHHH
Q 019292 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGAN--GARA------GSGGYGYLLEPL--------WW--VGMFTMIVGEIAN 67 (343)
Q Consensus 6 ~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~--~~r~------~~~~~~~l~~p~--------W~--~G~~~~~~g~i~~ 67 (343)
.+|+.+.-+| .+...+.++-+|.....+.. ..|- .-...-|.+.|. |+ -|+.-. .|..+.
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~-tgvmlm 114 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGF-TGVMLM 114 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhh-hHHHHH
Confidence 3577888888 77777777766654333221 0110 000112223222 21 122221 344566
Q ss_pred HHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeE----eecCCccCcCCHHHHHHHhcCh
Q 019292 68 FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV----LHAPLEESLNSVQEIWVLATQP 143 (343)
Q Consensus 68 ~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv----~~ap~~~~~~s~~el~~~~~~p 143 (343)
..||.+.|++=-.=+.-.+-+++.++|+.+||||.++.|.+|......|+++++ +|+.+++...+.+ .-...|
T Consensus 115 yya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~---~~~~~~ 191 (346)
T KOG4510|consen 115 YYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQ---VEYDIP 191 (346)
T ss_pred HHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccc---ccccCC
Confidence 777777776655556677889999999999999999999999999999998874 5555443322221 011223
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCc-ch---hHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccch-hHH-HHHHH
Q 019292 144 AFLLYVGSVVAVALVLILYCAPRYGQT-NI---LIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKC-IET-WIFAM 217 (343)
Q Consensus 144 ~fl~y~~v~~~~~~~Li~~~~~r~g~~-~~---l~y~~i~gllg~~tvl~~K~v~~~l~~~~~g~~~~~~-~~~-y~~l~ 217 (343)
.-..-..-+.....+.+ +-|.-|++ +. +-|-+.-+++-+ ++-.-. -|.-|+.| +.= |+++.
T Consensus 192 gt~aai~s~lf~asvyI--ilR~iGk~~h~~msvsyf~~i~lV~s--~I~~~~---------ig~~~lP~cgkdr~l~~~ 258 (346)
T KOG4510|consen 192 GTVAAISSVLFGASVYI--ILRYIGKNAHAIMSVSYFSLITLVVS--LIGCAS---------IGAVQLPHCGKDRWLFVN 258 (346)
T ss_pred chHHHHHhHhhhhhHHH--HHHHhhccccEEEEehHHHHHHHHHH--HHHHhh---------ccceecCccccceEEEEE
Confidence 32211111111111111 11111221 11 222221111111 111111 12222222 222 33444
Q ss_pred HHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhccccCCCC
Q 019292 218 VALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTREPD 297 (343)
Q Consensus 218 ~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs~~~~~~ 297 (343)
..+.+.+.|+ ++.+++|+=.+-- +.++..++.+++.+.-+++|+||-. .|.+ +|.+.++..++.-+..|-..
T Consensus 259 lGvfgfigQI-llTm~lQiErAGp-vaim~~~dvvfAf~wqv~ff~~~Pt--~ws~----~Ga~~vvsS~v~~a~~kwa~ 330 (346)
T KOG4510|consen 259 LGVFGFIGQI-LLTMGLQIERAGP-VAIMTYTDVVFAFFWQVLFFGHWPT--IWSW----VGAVMVVSSTVWVALKKWAG 330 (346)
T ss_pred ehhhhhHHHH-HHHHHhhhhccCC-eehhhHHHHHHHHHHHHHHhcCCCh--HHHh----hceeeeehhHHHHHHHHHhc
Confidence 5555666776 9999998755533 3567788899999999999999853 4544 45444555555545444433
No 35
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.32 E-value=0.001 Score=63.79 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCC------------CCCCCcccccchhHHHHH----HHHHHHHHHHHH
Q 019292 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGAR------------AGSGGYGYLLEPLWWVGM----FTMIVGEIANFV 69 (343)
Q Consensus 6 ~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~~~r------------~~~~~~~~l~~p~W~~G~----~~~~~g~i~~~~ 69 (343)
..|..+++.|+++.+.+.++.||-.++.+..... .-.+....-.++..|..+ ...+++..++..
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~~~ 234 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAAWNV 234 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999998853221100000 000000111122222112 124557778899
Q ss_pred HHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheee
Q 019292 70 AYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (343)
Q Consensus 70 Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~v 120 (343)
++...|++.++++..+..+++.+++.++++|+++..+++|+++++.|+.+.
T Consensus 235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC 285 (295)
T ss_pred HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999999999999998655
No 36
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.25 E-value=0.0021 Score=61.69 Aligned_cols=116 Identities=20% Similarity=0.223 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC--------C----------CCCcc------cccchhHH-----H
Q 019292 5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA--------G----------SGGYG------YLLEPLWW-----V 55 (343)
Q Consensus 5 ~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~~~r~--------~----------~~~~~------~l~~p~W~-----~ 55 (343)
+..|..+++.++++.+...+++||-.++.+...... + .++.. .-.++.+| .
T Consensus 141 ~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 220 (299)
T PRK11453 141 AMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL 220 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence 357999999999999999999998533221100000 0 00000 00122222 2
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheee
Q 019292 56 GMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (343)
Q Consensus 56 G~~~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~v 120 (343)
|+...+++..+++.++.-.++.-+.++..+..+++.+++.++++|+++..+++|.++++.|+.+.
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~ 285 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 33445566777777778889999999999999999999999999999999999999999998654
No 37
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.23 E-value=0.0025 Score=54.29 Aligned_cols=77 Identities=13% Similarity=0.246 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhh
Q 019292 209 CIETWIFAMVALTC-VITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGT 287 (343)
Q Consensus 209 ~~~~y~~l~~~~~~-~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV 287 (343)
++..|.+++..... .+..+ +.=+||+.++++.|.|+= -.....+++-+..+++|..+ ..+ ..|++++.+|+
T Consensus 63 ~~k~~lflilSGla~glswl-~Yf~ALk~G~as~VvPld-k~svvl~~lls~lfL~E~ls--~~~----~iG~~LI~~Ga 134 (140)
T COG2510 63 GPKSWLFLILSGLAGGLSWL-LYFRALKKGKASRVVPLD-KTSVVLAVLLSILFLGERLS--LPT----WIGIVLIVIGA 134 (140)
T ss_pred CcceehhhhHHHHHHHHHHH-HHHHHHhcCCcceEEEcc-cccHHHHHHHHHHHhcCCCC--HHH----HHHHHHHHhCe
Confidence 45555544444333 33333 333699999999999984 45667788899999999654 333 37888999999
Q ss_pred hhcccc
Q 019292 288 SVLHST 293 (343)
Q Consensus 288 ~lLs~~ 293 (343)
++++++
T Consensus 135 ilvs~~ 140 (140)
T COG2510 135 ILVSLR 140 (140)
T ss_pred eeEecC
Confidence 998763
No 38
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.00 E-value=0.0039 Score=49.97 Aligned_cols=64 Identities=16% Similarity=0.067 Sum_probs=37.1
Q ss_pred chhHHHHHH-HHHHHHHHHHHHHhhcchhhhhcc-hhhHHHHHHHHHHHHhccccccchhhhHHHH
Q 019292 50 EPLWWVGMF-TMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLC 113 (343)
Q Consensus 50 ~p~W~~G~~-~~~~g~i~~~~Al~~ap~slV~Pl-ga~~lv~~~~la~~~l~e~~~~~~~~G~~li 113 (343)
++.|..+.+ +++++..+...|+...|.++.-|+ .+++.+...+.+.++.||+++..++.|+.++
T Consensus 28 ~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 28 QLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp ------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 455555555 577888888999999999999997 5699999999999999999999999999875
No 39
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.93 E-value=0.013 Score=48.72 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=58.6
Q ss_pred cchhHHHHHHH-HHHHHHHHHHHHhhcchhhhhcch-hhHHHHHHHHHHHHhccccccchhhhHHHHhhhheee
Q 019292 49 LEPLWWVGMFT-MIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (343)
Q Consensus 49 ~~p~W~~G~~~-~~~g~i~~~~Al~~ap~slV~Plg-a~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~v 120 (343)
++|.|.+.+.. ++++..+--.|+...|..+.-+.= +++.+...+.+.++.||+++..++.|..+++.|++.+
T Consensus 33 ~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 33 RRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 45666666544 555666667778888999888874 5889999999999999999999999999999998754
No 40
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=96.89 E-value=0.021 Score=47.31 Aligned_cols=80 Identities=16% Similarity=0.309 Sum_probs=59.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHh
Q 019292 207 AKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSG 286 (343)
Q Consensus 207 ~~~~~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~G 286 (343)
+++|...........+...-..++..++++-|..+.+|+.+ .-.+.+.+.|..+|+|. .++.+ .+|..+++.|
T Consensus 31 ~~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~--ls~~~----~~Gi~lii~G 103 (111)
T PRK15051 31 KRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEP--VSPRH----WCGVAFIIGG 103 (111)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCC--CCHHH----HHHHHHHHHH
Confidence 45554444444444555556678888999999999999999 67777888999999995 44554 4677788899
Q ss_pred hhhcccc
Q 019292 287 TSVLHST 293 (343)
Q Consensus 287 V~lLs~~ 293 (343)
+++++++
T Consensus 104 v~~i~~~ 110 (111)
T PRK15051 104 IVILGST 110 (111)
T ss_pred HHHHhcc
Confidence 9988765
No 41
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.76 E-value=0.0065 Score=56.29 Aligned_cols=116 Identities=26% Similarity=0.291 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-CCC--------------CCCCC-cccc-cchhH--HHHHHHHHHHHHH
Q 019292 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGAN-GAR--------------AGSGG-YGYL-LEPLW--WVGMFTMIVGEIA 66 (343)
Q Consensus 6 ~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~-~~r--------------~~~~~-~~~l-~~p~W--~~G~~~~~~g~i~ 66 (343)
..|..+++.++++.+...+++|+-. +.... ... ..... .... +...+ +.|+...+++..+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999998643 11100 000 00000 0111 11111 1333334456778
Q ss_pred HHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEe
Q 019292 67 NFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122 (343)
Q Consensus 67 ~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~ 122 (343)
.+.++...|...++++..+..+++.+++.++++|+++..++.|+++++.|..+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999999876533
No 42
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.58 E-value=0.0073 Score=49.78 Aligned_cols=71 Identities=18% Similarity=0.068 Sum_probs=58.1
Q ss_pred chhHHHHHHH-HHHHHHHHHHHHhhcchhhhhcch-hhHHHHHHHHHHHHhccccccchhhhHHHHhhhheee
Q 019292 50 EPLWWVGMFT-MIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (343)
Q Consensus 50 ~p~W~~G~~~-~~~g~i~~~~Al~~ap~slV~Plg-a~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~v 120 (343)
++.|++.++. +.++..+-..|+...|.++.-++= +++.+.+.+.+.++.||+++..++.|+.+++.|++.+
T Consensus 28 ~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 28 RLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 5566555543 566666777778888998887764 4999999999999999999999999999999998765
No 43
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.01 Score=49.02 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=58.1
Q ss_pred chhHHHHHHH-HHHHHHHHHHHHhhcchhhhhcc-hhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheee
Q 019292 50 EPLWWVGMFT-MIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (343)
Q Consensus 50 ~p~W~~G~~~-~~~g~i~~~~Al~~ap~slV~Pl-ga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~v 120 (343)
|+.|.+.++. +++.+.+-..|+...|..+.-++ ++++.+..++.+.+++||+++..+++|..+++.|++.+
T Consensus 29 ~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 29 RLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 4566665544 56666677778888888887665 78899999999999999999999999999999998754
No 44
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.29 E-value=0.049 Score=46.44 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHH-HHhccccCCCHHHHHHHHHHHHHHHHhhhhccccC
Q 019292 216 AMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASA-IMFKDYSGQSASSIASELCGFITVLSGTSVLHSTR 294 (343)
Q Consensus 216 l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~-i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs~~~ 294 (343)
+...+++.......++.+|++.|.+...|+....+....+.+-. ++|+|.. ++. ..+|.++++.||+++++++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~l--s~~----~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETF--SLK----KTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHH----HHHHHHHHHHHHHHhccCC
Confidence 34455566667778999999999999999998877554444443 4899953 444 4578889999999998765
Q ss_pred CC
Q 019292 295 EP 296 (343)
Q Consensus 295 ~~ 296 (343)
+.
T Consensus 125 ~~ 126 (129)
T PRK02971 125 TK 126 (129)
T ss_pred CC
Confidence 53
No 45
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.24 E-value=0.22 Score=49.06 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCC
Q 019292 54 WVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (343)
Q Consensus 54 ~~G~~~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~ 126 (343)
-+=-+++.+-+-.+++++...|++.=|....+-++.++++...+|++|+++++|...++...|+.++=+..++
T Consensus 96 ~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~ 168 (345)
T KOG2234|consen 96 SVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLS 168 (345)
T ss_pred HHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC
Confidence 3334677787779999999999999999999999999999999999999999999999999999877533333
No 46
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.13 E-value=0.086 Score=43.76 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=60.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH
Q 019292 206 QAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLS 285 (343)
Q Consensus 206 ~~~~~~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~ 285 (343)
.|+++.+.+.. +++...-..++.+++++.|..+.+|+-...=+..+.+.|.++|+|.. ++. ...|..+++.
T Consensus 26 gf~~~~~~i~~---~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~--~~~----~~~gi~lIi~ 96 (110)
T PRK09541 26 GFTRLWPSVGT---IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL--DLP----AIIGMMLICA 96 (110)
T ss_pred CCCchhHHHHH---HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCC--CHH----HHHHHHHHHH
Confidence 46777776644 33444456688999999999999998887788888999999999954 454 3467778999
Q ss_pred hhhhccccC
Q 019292 286 GTSVLHSTR 294 (343)
Q Consensus 286 GV~lLs~~~ 294 (343)
||+++....
T Consensus 97 GVi~l~l~~ 105 (110)
T PRK09541 97 GVLVINLLS 105 (110)
T ss_pred HHHHHhcCC
Confidence 999996543
No 47
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.90 E-value=0.033 Score=53.51 Aligned_cols=115 Identities=19% Similarity=0.185 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC--CC-----CC----CCc---ccccchhHH----HHHHHHHHHHHH
Q 019292 5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGA--RA-----GS----GGY---GYLLEPLWW----VGMFTMIVGEIA 66 (343)
Q Consensus 5 ~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~~~--r~-----~~----~~~---~~l~~p~W~----~G~~~~~~g~i~ 66 (343)
...|+..++.|+++.+.-.+.-|+.. ..+..-. .. +. -.+ +-..++.+| .|+. ..+++.+
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~ 227 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAFG-VDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFF 227 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcC-CCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHH
Confidence 36799999999999988888777532 1110000 00 00 000 111222333 4444 4677778
Q ss_pred HHHHHh-hcchhhhhcchhhHHHHHHHHHHHHhccccccchh----hhHHHHhhhheeeE
Q 019292 67 NFVAYI-YAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGM----LGCLLCVVGSTMIV 121 (343)
Q Consensus 67 ~~~Al~-~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~----~G~~lii~G~~~vv 121 (343)
.+.+.. ..+.+.-.++..+..+.+.+.+.+++||+.+++++ +|+++++.|+.++.
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 888888 99999999999999999999999999999999999 99999999987654
No 48
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.88 E-value=0.048 Score=44.96 Aligned_cols=80 Identities=10% Similarity=0.192 Sum_probs=61.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHH
Q 019292 205 NQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVL 284 (343)
Q Consensus 205 ~~~~~~~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii 284 (343)
+.|+++.++++.++ +...-.+++.+|+|+-|..+.+++-...=+..+.+.|.++|+|.. ++.+ .+|+.+++
T Consensus 24 ~gf~~~~~~~~~i~---~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~--~~~~----~~gi~lIi 94 (105)
T PRK11431 24 HGFSRLTPSIITVT---AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESA--SPAR----LLSLALIV 94 (105)
T ss_pred hCCccHHHHHHHHH---HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCC--CHHH----HHHHHHHH
Confidence 34778877776543 334445789999999999888888888888888999999999954 4543 46677899
Q ss_pred Hhhhhcccc
Q 019292 285 SGTSVLHST 293 (343)
Q Consensus 285 ~GV~lLs~~ 293 (343)
.||+.|...
T Consensus 95 ~GVv~l~l~ 103 (105)
T PRK11431 95 AGIIGLKLS 103 (105)
T ss_pred HHHHhhhcc
Confidence 999998544
No 49
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=95.79 E-value=0.016 Score=55.45 Aligned_cols=62 Identities=15% Similarity=0.007 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEe
Q 019292 61 IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122 (343)
Q Consensus 61 ~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~ 122 (343)
.++..+.+.++...|++.++++.-++.+++.+++.++++|+++...+.|+++++.|+.++..
T Consensus 224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999999999999999999999999999999999988876543
No 50
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.48 E-value=0.13 Score=50.85 Aligned_cols=126 Identities=21% Similarity=0.261 Sum_probs=80.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC------C--------CC-CCCCCcccccchhHHHHHHH-HHHHHHH
Q 019292 3 SSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN------G--------AR-AGSGGYGYLLEPLWWVGMFT-MIVGEIA 66 (343)
Q Consensus 3 ~~~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~------~--------~r-~~~~~~~~l~~p~W~~G~~~-~~~g~i~ 66 (343)
++.++|=++++.|+++.|++.++|++-.++.++. | .- .--|+ .-+++-.|=..... ++...++
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~-~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILER-SGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheeh-hhhhccCCChhhHHHHHHHHHH
Confidence 4678999999999999999999999976553321 0 00 00000 11111112112222 3333445
Q ss_pred HHHHHhhcchhhh------hcch-hhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCccC
Q 019292 67 NFVAYIYAPAVLV------TPLG-ALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEES 129 (343)
Q Consensus 67 ~~~Al~~ap~slV------~Plg-a~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~~~ 129 (343)
.+.-|...|..+. .-++ ..+-++++++..++.|+++++.-++|.+++++|.++.....+++++
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 6666766666442 2222 3457889999999999999999999999999998877665554443
No 51
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=95.43 E-value=0.078 Score=44.00 Aligned_cols=78 Identities=17% Similarity=0.240 Sum_probs=59.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHH
Q 019292 205 NQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVL 284 (343)
Q Consensus 205 ~~~~~~~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii 284 (343)
+.|++|.+.+..++. ...=.+++.+|+|+-|..+.+|+-...-+..+.+.|.++|+|.. ++. ...|..+++
T Consensus 30 ~gf~~~~~~~~~~~~---~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~--~~~----~~~gi~lIi 100 (109)
T PRK10650 30 DGFRRKIYGILSLAA---VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRL--NRK----GWIGLVLLL 100 (109)
T ss_pred cCCcchHHHHHHHHH---HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHH----HHHHHHHHH
Confidence 347788776554433 33445689999999999998888888888899999999999954 454 346677888
Q ss_pred Hhhhhcc
Q 019292 285 SGTSVLH 291 (343)
Q Consensus 285 ~GV~lLs 291 (343)
.||+.|.
T Consensus 101 ~GVi~lk 107 (109)
T PRK10650 101 AGMVMIK 107 (109)
T ss_pred HHHHHhc
Confidence 9998874
No 52
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.40 E-value=0.73 Score=46.04 Aligned_cols=74 Identities=16% Similarity=0.238 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHH---HHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCcc
Q 019292 55 VGMFTMIVGEIAN---FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEE 128 (343)
Q Consensus 55 ~G~~~~~~g~i~~---~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~~ 128 (343)
.+..+..+-+++| =+||++-.++-.+=+.+.+=+|+..++..+.+||++....+++++++.|++++.....++.
T Consensus 161 ~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~ 237 (416)
T KOG2765|consen 161 LSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN 237 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence 4444444444444 3578999999999999999999999999999999999999999999999887776655443
No 53
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=95.31 E-value=3 Score=40.35 Aligned_cols=118 Identities=19% Similarity=0.168 Sum_probs=75.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh----hhhh--hcc------------CCCCCCCCCcccccchhHHHHHHHHHHHH
Q 019292 3 SSNLIGFILAVVSSAFIGSSFIIKKK----GLRK--AGA------------NGARAGSGGYGYLLEPLWWVGMFTMIVGE 64 (343)
Q Consensus 3 ~~~~iGv~LAl~ss~~~a~g~vlqk~----~~~~--~~~------------~~~r~~~~~~~~l~~p~W~~G~~~~~~g~ 64 (343)
.+.--|+++++.+.++-|.--..-|. +..+ ++| .-.|.-.+.++..++|+=+....+..+=.
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 34556899999999887765433332 2111 000 00011112345677887777776665555
Q ss_pred HHHHHHHhhcchh---hhhcchh-hHHHHHHHHHHHHhccccccchhhhHHHHhhhheee
Q 019292 65 IANFVAYIYAPAV---LVTPLGA-LSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (343)
Q Consensus 65 i~~~~Al~~ap~s---lV~Plga-~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~v 120 (343)
..|..-+-+||-. +=+.+|= +.-++|.++++.++|||+++.+|+.+.+..+|+..-
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~ 142 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQ 142 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 5777778888765 2223332 234678999999999999999999999999998643
No 54
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=95.28 E-value=0.3 Score=41.25 Aligned_cols=70 Identities=17% Similarity=0.327 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhccccCC
Q 019292 220 LTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTRE 295 (343)
Q Consensus 220 ~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs~~~~ 295 (343)
+++...-.+++.+++++-|..+.+|+....=++.+.+.|..+|+|.. +.. -.+|..+++.||+.+....+
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~--s~~----~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESL--SLM----KIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCC--CHH----HHHHHHHHHHHHHHhhcCCC
Confidence 34444556789999999999999999887888888999999999954 444 44677889999999965543
No 55
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.20 E-value=0.14 Score=40.92 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=32.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHH
Q 019292 206 QAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASE 276 (343)
Q Consensus 206 ~~~~~~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~ 276 (343)
.++++...+.. +.+...-..++.+|+++-|..+.+|+....=+....+.|..+|+|. .++.++.+.
T Consensus 25 g~~~~~~~~~~---~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~--~s~~~~~gi 90 (93)
T PF00893_consen 25 GFTQLIPTILA---VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGES--LSLSKWLGI 90 (93)
T ss_dssp ---------HH---HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred hhcchhhHHHH---HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCC--CCHHHHhhe
Confidence 35555554433 2344555679999999999999999999888889999999999995 445555443
No 56
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=94.80 E-value=0.054 Score=51.78 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC-------C----------CCCccccc------------chhHH
Q 019292 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA-------G----------SGGYGYLL------------EPLWW 54 (343)
Q Consensus 4 ~~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~~~r~-------~----------~~~~~~l~------------~p~W~ 54 (343)
.+..|.++++.|+++.++..++.||-.++.+.+..+. + .++..... ...|.
T Consensus 142 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (302)
T TIGR00817 142 FNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT 221 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence 4567999999999999999999888543111000000 0 00000000 01121
Q ss_pred HHHHH----HHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheee
Q 019292 55 VGMFT----MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (343)
Q Consensus 55 ~G~~~----~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~v 120 (343)
.+... +...+..++.++...+++-.+-.+.+.-+++.+++.++++|+++..+++|.++++.|+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~ 291 (302)
T TIGR00817 222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLY 291 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence 12111 1112234456777888888888888889999999999999999999999999999998654
No 57
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=94.64 E-value=0.18 Score=42.81 Aligned_cols=56 Identities=18% Similarity=0.424 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhhee
Q 019292 64 EIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (343)
Q Consensus 64 ~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~ 119 (343)
+..++.......+.--+=++.+--+...+++..+++|+++..++.|+++++.|...
T Consensus 95 n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 95 NLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 34556666667777777788888899999999999999999999999999999764
No 58
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=94.10 E-value=0.17 Score=48.73 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEee
Q 019292 54 WVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH 123 (343)
Q Consensus 54 ~~G~~~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ 123 (343)
..=.++.+.|..+..++|.+..++--|-+-+.-++|..+++.-+||++++.++|+|...+..|.+.+...
T Consensus 90 l~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 90 LPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred cChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 3356788899999999999999999999999999999999999999999999999999999999887654
No 59
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=93.56 E-value=0.32 Score=40.23 Aligned_cols=78 Identities=21% Similarity=0.208 Sum_probs=58.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHh
Q 019292 207 AKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSG 286 (343)
Q Consensus 207 ~~~~~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~G 286 (343)
|+++.+++..++. ...-..+|.+|+++-|..+.+++-.-.=+..+.+.|.++|+|.. ++. -..|..++++|
T Consensus 27 f~~~~~~il~~v~---~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l--~~~----~~~gl~LiiaG 97 (106)
T COG2076 27 FTRLWPSILTIVG---YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESL--SLI----KLLGLALILAG 97 (106)
T ss_pred ccccchHHHHHHH---HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcC--CHH----HHHHHHHHHHH
Confidence 5666665544333 33345688999999999988888888888889999999999954 444 34677789999
Q ss_pred hhhcccc
Q 019292 287 TSVLHST 293 (343)
Q Consensus 287 V~lLs~~ 293 (343)
++.|...
T Consensus 98 vi~Lk~~ 104 (106)
T COG2076 98 VIGLKLG 104 (106)
T ss_pred HHHhhhc
Confidence 9988643
No 60
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=93.18 E-value=1.6 Score=35.56 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=47.7
Q ss_pred HHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhccccCCC
Q 019292 222 CVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTREP 296 (343)
Q Consensus 222 ~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs~~~~~ 296 (343)
+...+......|++..+ ..+.|+ +.+.++++.+.|.++|+| +.++.. ..|.+++..|++++..++..
T Consensus 44 ~~~~~~~~~~~a~~~~~-~~v~~i-~~~~pi~~~ll~~~~~~e--r~~~~~----~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 44 GFGVAYLLFFYALSYAP-ALVAAI-FSLSPIFTALLSWLFFKE--RLSPRR----WLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHHHhCc-HHHHHH-HHHHHHHHHHHHHHHhcC--CCCHHH----HHHHHHHHHHHHHHhhhhcc
Confidence 33344556667888888 466644 557999999999999999 445553 35667788899988765543
No 61
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=92.50 E-value=0.68 Score=44.40 Aligned_cols=86 Identities=10% Similarity=0.151 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhh
Q 019292 210 IETWIFAMVALTC-VITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTS 288 (343)
Q Consensus 210 ~~~y~~l~~~~~~-~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~ 288 (343)
+..+...++.-.+ .+.|. ..=++.+.---+...|+-+.+--+.+.+.|+++|+||... .+...=.+++++++.|++
T Consensus 42 ~~~~~~~~lsG~~W~iGq~-~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~--~~~~~G~~Al~liiiGv~ 118 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQI-GQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTT--TQKIIGFLALVLIIIGVI 118 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCc--chHHHHHHHHHHHHHHHH
Confidence 3444443333333 55555 3335667777788899999998899999999999999863 455555668889999999
Q ss_pred hccccCCCCC
Q 019292 289 VLHSTREPDT 298 (343)
Q Consensus 289 lLs~~~~~~~ 298 (343)
+-+.+++.++
T Consensus 119 lts~~~~~~~ 128 (269)
T PF06800_consen 119 LTSYQDKKSD 128 (269)
T ss_pred Hhcccccccc
Confidence 8776655554
No 62
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=92.26 E-value=0.69 Score=45.37 Aligned_cols=71 Identities=20% Similarity=0.326 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEe
Q 019292 51 PLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122 (343)
Q Consensus 51 p~W~~G~~~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~ 122 (343)
+.-..|.. ..+|-+..-.|+..-|.+.+|-+-++..++++++++++.+|+.++..+.-.+.++.|+.+-..
T Consensus 85 ~llpl~~~-~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 85 TLLPLGLV-FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred HHHHHHHH-HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 33334433 447777778899999999999999999999999999999999999999888888888765433
No 63
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=92.22 E-value=0.29 Score=39.23 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhcc
Q 019292 218 VALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLH 291 (343)
Q Consensus 218 ~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs 291 (343)
....+...-....++|+++-+++.+.++.+ ..+..+.+.+.++++|.- ++. ...|.++++.|++++.
T Consensus 59 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~~--~~~----~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 59 LGLLGTALAYLLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGERP--SWR----QIIGIILIIIGVVLIS 125 (126)
T ss_pred hhccceehHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCCC--CHH----HHHHHHHHHHHHHHHH
Confidence 333433444557888999999999998887 789999999999999953 444 4456667777777653
No 64
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=92.14 E-value=0.64 Score=42.40 Aligned_cols=115 Identities=18% Similarity=0.245 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-----C-------------C--CCCCC--CCcccc--cchhHHHHHHH
Q 019292 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGA-----N-------------G--ARAGS--GGYGYL--LEPLWWVGMFT 59 (343)
Q Consensus 4 ~~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~-----~-------------~--~r~~~--~~~~~l--~~p~W~~G~~~ 59 (343)
+.+.|+...+.+.++.+..-+.|+|+.++.+. + + .+++. ...+.+ ..+.+|.-.++
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL 161 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence 45667777777777788888888887553210 0 0 00000 011111 12333333344
Q ss_pred HHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhhe
Q 019292 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGST 118 (343)
Q Consensus 60 ~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~ 118 (343)
...|.++-...+.+++.....=...+..+++.+++.++.+|+++...|.|+.++..|+.
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 56677777777888899999999999999999999999999999999999999998864
No 65
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=91.87 E-value=5 Score=38.82 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc-chhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCcc
Q 019292 51 PLWWVGMFTMIVGEIANFVAYIYA-PAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEE 128 (343)
Q Consensus 51 p~W~~G~~~~~~g~i~~~~Al~~a-p~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~~ 128 (343)
+.|..=+.++-.-++.|=.|+.|. |.-+=.=+=+-+++.|+.++..++|+|-+.+++..++++.+|+++.-++..++.
T Consensus 65 k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~ 143 (330)
T KOG1583|consen 65 KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDG 143 (330)
T ss_pred hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcch
Confidence 345444555555566776677664 222222346778999999999999999999999999999999998877766554
No 66
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=91.37 E-value=1 Score=37.03 Aligned_cols=48 Identities=17% Similarity=0.376 Sum_probs=39.7
Q ss_pred hhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCc
Q 019292 79 VTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (343)
Q Consensus 79 V~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~ 127 (343)
-+.-|.+-++.++.-....-|.+.++.||.|.+.|.+|+. ++.++|..
T Consensus 61 YAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~-vil~~pR~ 108 (109)
T COG1742 61 YAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVA-VILFGPRG 108 (109)
T ss_pred HHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhcee-eeEeCCCC
Confidence 4556788888999999999999999999999999999954 55666643
No 67
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=90.99 E-value=0.53 Score=44.77 Aligned_cols=122 Identities=18% Similarity=0.170 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCC-----------------CCCCCcccccchhHHHHHHHHHH----
Q 019292 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGAR-----------------AGSGGYGYLLEPLWWVGMFTMIV---- 62 (343)
Q Consensus 4 ~~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~~~r-----------------~~~~~~~~l~~p~W~~G~~~~~~---- 62 (343)
-...|+.+|+.+..|-+.=.+.-||.-+.. ++.+ ..+.+..++.-+.-..+...-++
T Consensus 145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSal 222 (292)
T COG5006 145 LDPVGVALALGAGACWALYIVLGQRAGRAE--HGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSAL 222 (292)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHcchhcccC--CCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhccc
Confidence 356799999999999887777766643211 1110 01112233332333334433333
Q ss_pred HHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCc
Q 019292 63 GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (343)
Q Consensus 63 g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~ 127 (343)
=..+..+|+.-.|...-.-+.++.-.+.++.+..+|+|+++..+|+|+++++.++....+...++
T Consensus 223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~ 287 (292)
T COG5006 223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP 287 (292)
T ss_pred chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence 34578999999999999999999999999999999999999999999999999987665544443
No 68
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=90.71 E-value=19 Score=35.78 Aligned_cols=282 Identities=15% Similarity=0.215 Sum_probs=144.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhh---------h-------hcc----CCCCCCCCCccccc----chhHHHH
Q 019292 1 MFSSNLIGFILAVVSSAFIGSSFIIKKKGLR---------K-------AGA----NGARAGSGGYGYLL----EPLWWVG 56 (343)
Q Consensus 1 ~~~~~~iGv~LAl~ss~~~a~g~vlqk~~~~---------~-------~~~----~~~r~~~~~~~~l~----~p~W~~G 56 (343)
|.+.-.+|++.-.+++++.+.-.+=.||-.. + .|- -.. + +..++++ +-+|+.-
T Consensus 1 m~~~ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv~gi~swli~P~~~a~l~i-p--~~~~i~~~~~~~~l~~~~ 77 (344)
T PF06379_consen 1 MNSAIILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLVQGIFSWLIVPWLWALLAI-P--DFFSIYSATPASTLFWTF 77 (344)
T ss_pred CCchHHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhC-C--cHHHHHHhCChhHHHHHH
Confidence 5677888999999999998877766666211 0 000 000 0 1112221 1222222
Q ss_pred HH--HHHHHHHHHHHHHhhcchhhhhcch-hhHHHHHHHHHHHHhcc-------ccccchhhhHHHHhhhheeeEeecCC
Q 019292 57 MF--TMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNE-------KLQKMGMLGCLLCVVGSTMIVLHAPL 126 (343)
Q Consensus 57 ~~--~~~~g~i~~~~Al~~ap~slV~Plg-a~~lv~~~~la~~~l~e-------~~~~~~~~G~~lii~G~~~vv~~ap~ 126 (343)
.. +-.+|.+..-.+..+.-.++-+.+. .++.++..++-..+.++ +-.....+|++++.+|++++...+..
T Consensus 78 l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 78 LFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred HHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHh
Confidence 11 1234444445555555555555432 23344444554444332 22334578999999999988776643
Q ss_pred ccCcC--CHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhc---c------cCCCcchhHHHH----HHHhhhHHHHHHHH
Q 019292 127 EESLN--SVQEIWVLATQPAFLLYVGSVVAVALVLILYCA---P------RYGQTNILIYIG----ICSVIGSLTVMSVK 191 (343)
Q Consensus 127 ~~~~~--s~~el~~~~~~p~fl~y~~v~~~~~~~Li~~~~---~------r~g~~~~l~y~~----i~gllg~~tvl~~K 191 (343)
.++.. +.+|. --..+ +.-+.+..+.....-+-.. | .+|... .|.. +--+.||++.-+.=
T Consensus 158 Ke~~~~~~~~ef---n~~kG-l~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~--l~~~l~~~vvv~~GGf~tN~~y 231 (344)
T PF06379_consen 158 KEKELGEEAKEF---NFKKG-LIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNP--LYANLPVYVVVLWGGFITNLIY 231 (344)
T ss_pred hhhhhccchhhh---hhhhh-HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCc--HHHhCchhhhhhhhHHHHHHHH
Confidence 32222 22331 11122 2212222222222111111 1 122211 1111 11256666666655
Q ss_pred HHHHHHH-HHhc--Cccccchh---HHHHHHHHHHHHHHHHHHHHhHhhcccCc---ccccchhHhHHhHHHHHHHHHHh
Q 019292 192 AIGIAIK-LTLE--GLNQAKCI---ETWIFAMVALTCVITQLNYLNMALDTFNT---AVVSPIYYAMFTSFTIFASAIMF 262 (343)
Q Consensus 192 ~v~~~l~-~~~~--g~~~~~~~---~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a---~~v~P~~~v~~t~~~i~~g~i~f 262 (343)
++-...+ .+.+ ++.....+ .-|++....-+.=..|..+.-.+=.+-.+ ...-++...+..+++-+.| +..
T Consensus 232 c~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwG-l~l 310 (344)
T PF06379_consen 232 CLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWG-LIL 310 (344)
T ss_pred HHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHH-HHH
Confidence 5544333 1121 12111122 22555555555557888888765543332 3455666666666666666 568
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHhhhhccc
Q 019292 263 KDYSGQSASSIASELCGFITVLSGTSVLHS 292 (343)
Q Consensus 263 ~E~~~~~~~~~~~~~~G~~~ii~GV~lLs~ 292 (343)
+||++.+......+.+|+++++..++++..
T Consensus 311 kEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 311 KEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 999999988888899999999988887643
No 69
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=89.97 E-value=16 Score=33.84 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=54.2
Q ss_pred HHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCc
Q 019292 64 EIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (343)
Q Consensus 64 ~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~ 127 (343)
+-....|+--..++.++.+.+..-.|-.+++...||+|+...+++..++.+.|++++.. ++.|
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay-~DN~ 129 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAY-ADNE 129 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEe-ccch
Confidence 34567788889999999999999999999999999999999999999999999876654 4444
No 70
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=89.84 E-value=1.9 Score=42.47 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=38.9
Q ss_pred HHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhhee
Q 019292 70 AYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (343)
Q Consensus 70 Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~ 119 (343)
++.-.++.--+=.+.+.-++..+++.++++|+++..+++|+++++.|+.+
T Consensus 296 ~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l 345 (350)
T PTZ00343 296 CLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL 345 (350)
T ss_pred HHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence 34444444444455566678889999999999999999999999999864
No 71
>PRK02237 hypothetical protein; Provisional
Probab=88.28 E-value=2 Score=35.61 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=38.8
Q ss_pred hcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCC
Q 019292 80 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (343)
Q Consensus 80 ~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~ 126 (343)
+.-|++-++.+.+-.+..-|+|.++.|++|.++|.+|+.++ .++|.
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI-~~~pR 108 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI-MYAPR 108 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh-eecCC
Confidence 44577888888899999999999999999999999998755 35554
No 72
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=88.24 E-value=0.61 Score=38.59 Aligned_cols=78 Identities=19% Similarity=0.314 Sum_probs=63.7
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhcch-hhHHHHHHHHHHHHhccccc-cchhhhHHHHhhhheee
Q 019292 43 GGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQ-KMGMLGCLLCVVGSTMI 120 (343)
Q Consensus 43 ~~~~~l~~p~W~~G~~~~~~g~i~~~~Al~~ap~slV~Plg-a~~lv~~~~la~~~l~e~~~-~~~~~G~~lii~G~~~v 120 (343)
+.+..+.+...|+=+++---|+...+.-++-+|.++-.|.. ++++.++++++..+ +|+.. ++-++|+.+++.|+.+.
T Consensus 45 e~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 45 EMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccceeehhhhHHhhhhhhe
Confidence 34566778888899999888999999999999999999985 67889999988664 66665 45578999999998765
Q ss_pred E
Q 019292 121 V 121 (343)
Q Consensus 121 v 121 (343)
+
T Consensus 124 i 124 (125)
T KOG4831|consen 124 I 124 (125)
T ss_pred e
Confidence 3
No 73
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=86.11 E-value=2.7 Score=35.11 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=49.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHh
Q 019292 207 AKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSG 286 (343)
Q Consensus 207 ~~~~~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~G 286 (343)
+.+|+..+-.+.=..+.+ ...-.|.+.|-+..+|+.+..--+++.+.|..+.+|..+ +. -..|+.+++.|
T Consensus 39 l~n~~y~ipf~lNq~GSv----~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~--~~----~~~G~~Li~~G 108 (113)
T PF10639_consen 39 LLNPKYIIPFLLNQSGSV----LFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVIS--RR----TWLGMALILAG 108 (113)
T ss_pred HHhHHHHHHHHHHHHHHH----HHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccc--hh----HHHHHHHHHcC
Confidence 445554443333333333 223368889999999999999889999999888777533 22 35788888888
Q ss_pred hhh
Q 019292 287 TSV 289 (343)
Q Consensus 287 V~l 289 (343)
+.+
T Consensus 109 v~L 111 (113)
T PF10639_consen 109 VAL 111 (113)
T ss_pred eee
Confidence 875
No 74
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=84.79 E-value=2 Score=40.85 Aligned_cols=223 Identities=14% Similarity=0.171 Sum_probs=130.6
Q ss_pred ccchhHHHHHHH---HHHHHHHHHHHHhhcchhhhhcch-hhHHHHHHHHHHHHhccccccch----hhhHHHHhhhhee
Q 019292 48 LLEPLWWVGMFT---MIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMG----MLGCLLCVVGSTM 119 (343)
Q Consensus 48 l~~p~W~~G~~~---~~~g~i~~~~Al~~ap~slV~Plg-a~~lv~~~~la~~~l~e~~~~~~----~~G~~lii~G~~~ 119 (343)
+.-..|..|++. -..|+..||-|..+...|.-.|+. +.+++-+.+++-+.+||=-+..+ .++.+++++|..+
T Consensus 54 ~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~l 133 (288)
T COG4975 54 LTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYL 133 (288)
T ss_pred cchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheE
Confidence 334567788765 346888899999999999999996 67899999999999999887655 3467788888877
Q ss_pred eEeecCCccCcCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 019292 120 IVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKL 199 (343)
Q Consensus 120 vv~~ap~~~~~~s~~el~~~~~~p~fl~y~~v~~~~~~~Li~~~~~r~g~~~~l~y~~i~gllg~~tvl~~K~v~~~l~~ 199 (343)
-..-.+.+.+..+++.+.+-..- +.|.. .-...|.+.+|- . -+.+.++++-++++..+-.
T Consensus 134 Ts~~~~~nk~~~~~~n~kkgi~~---L~iSt-----~GYv~yvvl~~~----f--------~v~g~saiLPqAiGMv~~a 193 (288)
T COG4975 134 TSKQDRNNKEEENPSNLKKGIVI---LLIST-----LGYVGYVVLFQL----F--------DVDGLSAILPQAIGMVIGA 193 (288)
T ss_pred eeeeccccccccChHhhhhheee---eeeec-----cceeeeEeeecc----c--------cccchhhhhHHHHHHHHHH
Confidence 66655544444455444321100 00000 000001111110 0 1556667777776654432
Q ss_pred H---hcCccccchhHHHHHHHHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHH
Q 019292 200 T---LEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASE 276 (343)
Q Consensus 200 ~---~~g~~~~~~~~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~ 276 (343)
. ....+-..+-.+|.-++..+.-+..-+.++=.+=+.+.++-.+ +-+. -.+.+.++|..+++|.+ +..++...
T Consensus 194 li~~~~~~~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FS-lSQl-gViisTiGGIl~L~ekK--tkkEm~~v 269 (288)
T COG4975 194 LILGFFKMEKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFS-LSQL-GVIISTIGGILFLGEKK--TKKEMVYV 269 (288)
T ss_pred HHHhhcccccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeee-Hhhh-eeeeeecceEEEEeccC--chhhhhhh
Confidence 2 1222345556666666555544433333332211222221100 0000 11235678999999965 57899999
Q ss_pred HHHHHHHHHhhhhccccC
Q 019292 277 LCGFITVLSGTSVLHSTR 294 (343)
Q Consensus 277 ~~G~~~ii~GV~lLs~~~ 294 (343)
..|.++++.|..+|.--|
T Consensus 270 ~iGiilivvgai~lg~~K 287 (288)
T COG4975 270 IIGIILIVVGAILLGIAK 287 (288)
T ss_pred hhhHHHHHHHhhhhheec
Confidence 999999999999887544
No 75
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=81.66 E-value=43 Score=31.96 Aligned_cols=210 Identities=12% Similarity=0.116 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhcch-hhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCC----ccCc
Q 019292 56 GMFTMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL----EESL 130 (343)
Q Consensus 56 G~~~~~~g~i~~~~Al~~ap~slV~Plg-a~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~----~~~~ 130 (343)
--+.+.+..+.+=-|+.+.|.-- |-+| +.--+--++++-.+.|.+-++++..-+.+|++|++++..--.+ |++.
T Consensus 91 cs~sYLlAMVssN~Alq~vpYPT-qVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t 169 (337)
T KOG1580|consen 91 CSASYLLAMVSSNQALQYVPYPT-QVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKT 169 (337)
T ss_pred HHHHHHHHHHhccchhcccCCcH-HHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccc
Confidence 33445566665555666666421 1011 0111223567777889999999999999999999888664222 2233
Q ss_pred CCHHHHHHHhcChhHHHHHHHHHH-HHHHHHHHh--cccCCCcchhHHHHH-HHhhhHHHHHHHHHHHHHHHHHhcCccc
Q 019292 131 NSVQEIWVLATQPAFLLYVGSVVA-VALVLILYC--APRYGQTNILIYIGI-CSVIGSLTVMSVKAIGIAIKLTLEGLNQ 206 (343)
Q Consensus 131 ~s~~el~~~~~~p~fl~y~~v~~~-~~~~Li~~~--~~r~g~~~~l~y~~i-~gllg~~tvl~~K~v~~~l~~~~~g~~~ 206 (343)
.-..|+...++ ...- ..-..-=++ +.+++..+++.|.-. +.+.=|...+++--.=+.+. ..
T Consensus 170 ~g~GElLL~lS---------L~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~y------F~ 234 (337)
T KOG1580|consen 170 FGFGELLLILS---------LAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFY------FV 234 (337)
T ss_pred cchHHHHHHHH---------HHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHH------HH
Confidence 33345422110 0000 000000011 123344556665432 33333333333222111111 12
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHh
Q 019292 207 AKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSG 286 (343)
Q Consensus 207 ~~~~~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~G 286 (343)
-.||..|-=+....+|..+..+|.=+....|.+.. +.+.+..=-.++|++++++|+. ..++.||++ .++++.|
T Consensus 235 ~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLt-CSivTTTRKfFTil~SVllf~n--pls~rQwlg----tvlVF~a 307 (337)
T KOG1580|consen 235 QRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLT-CSIVTTTRKFFTILISVLLFNN--PLSGRQWLG----TVLVFSA 307 (337)
T ss_pred HhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCee-EEEEeehHHHHHHHHHHHHhcC--cCcHHHHHH----HHHHHHH
Confidence 34666654444444554444446667777776632 2333445567889999999997 446766654 4444444
Q ss_pred hh
Q 019292 287 TS 288 (343)
Q Consensus 287 V~ 288 (343)
..
T Consensus 308 L~ 309 (337)
T KOG1580|consen 308 LT 309 (337)
T ss_pred hh
Confidence 33
No 76
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=80.70 E-value=1.8 Score=35.76 Aligned_cols=46 Identities=24% Similarity=0.499 Sum_probs=38.6
Q ss_pred hcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCC
Q 019292 80 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (343)
Q Consensus 80 ~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~ 126 (343)
+.-|++-++.+.+-.+.+-|+|.++.|++|..+|.+|+.++ .++|.
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI-~~~PR 106 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII-LFAPR 106 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe-EecCC
Confidence 34567788899999999999999999999999999998765 44553
No 77
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=76.13 E-value=2.8 Score=39.82 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=58.8
Q ss_pred chhHHHHHHHHHHHH-HHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHh
Q 019292 208 KCIETWIFAMVALTC-VITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSG 286 (343)
Q Consensus 208 ~~~~~y~~l~~~~~~-~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~G 286 (343)
.+++.+++-++.-.. .+.|++-+ ||.+.-..+.-.|+-+-+--+.+-+.|++.|+||.+ +.+.+.=....++++.|
T Consensus 54 ~T~~~~iv~~isG~~Ws~GQ~~Qf-ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t--~~~~IlG~iAliliviG 130 (288)
T COG4975 54 LTLTIFIVGFISGAFWSFGQANQF-KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTT--PTQIILGFIALILIVIG 130 (288)
T ss_pred cchhhHHHHHHhhhHhhhhhhhhh-hheeeeeeeccccccchhhHhhceeeeEEEEeccCc--chhHHHHHHHHHHHHHh
Confidence 344444433333222 56666544 466666777888999998889999999999999986 56666556667889999
Q ss_pred hhhccccCC
Q 019292 287 TSVLHSTRE 295 (343)
Q Consensus 287 V~lLs~~~~ 295 (343)
+++=+..++
T Consensus 131 ~~lTs~~~~ 139 (288)
T COG4975 131 IYLTSKQDR 139 (288)
T ss_pred heEeeeecc
Confidence 997655443
No 78
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=74.42 E-value=15 Score=35.24 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC--C------------------CCCc----ccccchhHHHHHHH-H
Q 019292 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA--G------------------SGGY----GYLLEPLWWVGMFT-M 60 (343)
Q Consensus 6 ~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~~~r~--~------------------~~~~----~~l~~p~W~~G~~~-~ 60 (343)
..|+++.+.|-++.|.-.+.|+|-.++.+.+..+. . .+.. -..+.|..+.-+++ .
T Consensus 153 ~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s 232 (303)
T PF08449_consen 153 ALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS 232 (303)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH
Confidence 45999999999999999999999765443221000 0 0000 01122333333222 3
Q ss_pred HHHHHHHHHH---HhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhhee
Q 019292 61 IVGEIANFVA---YIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (343)
Q Consensus 61 ~~g~i~~~~A---l~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~ 119 (343)
+.+.+++..- ...-.+...+=.+.+--+++.+++..+.+++++..+|.|.+++..|..+
T Consensus 233 ~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~ 294 (303)
T PF08449_consen 233 LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL 294 (303)
T ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence 3344433222 2223333344455566678889999999999999999999999999754
No 79
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=69.79 E-value=34 Score=32.07 Aligned_cols=109 Identities=19% Similarity=0.289 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC--------------------CCCCC--CCCccccc--chhHHHHHHH
Q 019292 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN--------------------GARAG--SGGYGYLL--EPLWWVGMFT 59 (343)
Q Consensus 4 ~~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~--------------------~~r~~--~~~~~~l~--~p~W~~G~~~ 59 (343)
+..+|+++.++++++.|.+.+...|-+|+.+.+ -.+.+ ......+. +++=|.=+.+
T Consensus 111 ~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~ 190 (244)
T PF04142_consen 111 NPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFL 190 (244)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHH
Confidence 467899999999999999988877766543210 00000 00112222 2222232333
Q ss_pred HHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHH
Q 019292 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLL 112 (343)
Q Consensus 60 ~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~l 112 (343)
..+|-+.-...+.+++-.+=.=-.+++++.+++++..+.+.+++..-.+|+.+
T Consensus 191 ~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 191 QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 45555555556777776666666788899999999999999998877776654
No 80
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=69.50 E-value=2 Score=41.10 Aligned_cols=56 Identities=29% Similarity=0.544 Sum_probs=49.1
Q ss_pred HHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEee
Q 019292 68 FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH 123 (343)
Q Consensus 68 ~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ 123 (343)
.-||.+....-++-|-.-+++.-.+++.++||.|-+..++.|++.|++|++.++..
T Consensus 96 V~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~s 151 (336)
T KOG2766|consen 96 VKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFS 151 (336)
T ss_pred eeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEe
Confidence 44677777778888888999999999999999999999999999999999887654
No 81
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.22 E-value=44 Score=27.44 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=60.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHH---Hhhcchhh
Q 019292 2 FSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVA---YIYAPAVL 78 (343)
Q Consensus 2 ~~~~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~~~r~~~~~~~~l~~p~W~~G~~~~~~g~i~~~~A---l~~ap~sl 78 (343)
|+.+...++|=+.|++|+...- +||.+...++ .-..---.|=+.+.=+.+..-+|=+. |+-+-+-.
T Consensus 5 ~~~~l~~vlLL~~SNvFMTFAW----YghLk~~~~p-------l~~~i~~SWGIA~fEY~LqvPaNRiG~~v~s~~QLK~ 73 (116)
T COG3169 5 MSVYLYPVLLLIGSNVFMTFAW----YGHLKFTNKP-------LVIVILASWGIAFFEYLLQVPANRIGHQVYSAAQLKT 73 (116)
T ss_pred CchHHHHHHHHHhhHHHHHHHH----HHHHhccCCc-------hhHHHHHHhhHHHHHHHHhCccchhhhhhccHHHHHH
Confidence 6677888899999999987765 6665543210 11111123433333233322222222 22222222
Q ss_pred hhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhhe
Q 019292 79 VTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGST 118 (343)
Q Consensus 79 V~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~ 118 (343)
.| -.+++.+=..++.+++||+++...+.|..++..|+.
T Consensus 74 mQ--EVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~ 111 (116)
T COG3169 74 MQ--EVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVY 111 (116)
T ss_pred HH--HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 22 245666678899999999999988888877776654
No 82
>PRK13499 rhamnose-proton symporter; Provisional
Probab=66.44 E-value=39 Score=33.61 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=51.8
Q ss_pred HHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCC-CHHHHHHHHHHHHHHHHhhhhccc
Q 019292 223 VITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQ-SASSIASELCGFITVLSGTSVLHS 292 (343)
Q Consensus 223 ~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~-~~~~~~~~~~G~~~ii~GV~lLs~ 292 (343)
.+.|+.+. ++.+.---+.-.|+-.-.-.+.+.+-+.++++||... +..+......|+++++.|+.+-+.
T Consensus 84 ~iG~i~~~-~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 84 GIGGITYG-LTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HhhhhhHH-HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 45555332 4566666677889988888889999999999999722 233444588899999999999887
No 83
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=60.52 E-value=1.1e+02 Score=31.11 Aligned_cols=74 Identities=15% Similarity=0.260 Sum_probs=39.0
Q ss_pred cchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCC-------------ccCcCCHHHHHHHhcChhHHH
Q 019292 81 PLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL-------------EESLNSVQEIWVLATQPAFLL 147 (343)
Q Consensus 81 Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~-------------~~~~~s~~el~~~~~~p~fl~ 147 (343)
--|+++....+.++-++.....+..-|++....++=..++....|+ +++..+.+|++++++.|.|..
T Consensus 145 ~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~ 224 (412)
T PF01306_consen 145 MWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWF 224 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHH
T ss_pred HHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHH
Confidence 3477788788887777776555555566554322211121122211 112234567889999998876
Q ss_pred HHHHHHH
Q 019292 148 YVGSVVA 154 (343)
Q Consensus 148 y~~v~~~ 154 (343)
+...+..
T Consensus 225 ~~l~v~g 231 (412)
T PF01306_consen 225 FVLFVIG 231 (412)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444333
No 84
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=57.93 E-value=9.3 Score=31.60 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHH---HHHHHHH-------Hhhcchh
Q 019292 8 GFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVG---EIANFVA-------YIYAPAV 77 (343)
Q Consensus 8 Gv~LAl~ss~~~a~g~vlqk~~~~~~~~~~~r~~~~~~~~l~~p~W~~G~~~~~~g---~i~~~~A-------l~~ap~s 77 (343)
.+.|=++|++|+...- +||.|..+ .+|+|.+=.+.-.+. ...+.=| ++.+-+-
T Consensus 3 ti~LL~~SN~FMTfAW----YGHLK~~~-------------~~pl~~ail~SWgIAffEY~l~VPANRiG~~~~s~~QLK 65 (108)
T PF04342_consen 3 TILLLILSNIFMTFAW----YGHLKFKS-------------SKPLWIAILISWGIAFFEYCLQVPANRIGYQTFSLAQLK 65 (108)
T ss_pred hhHHHHHHHHHHHHHH----HHHhhccc-------------cCcHHHHHHHHHHHHHHHHHHhCcchhhhccccCHHHHH
Confidence 3566788999988776 77766541 126665433322111 1122111 2222222
Q ss_pred hhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhhe
Q 019292 78 LVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGST 118 (343)
Q Consensus 78 lV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~ 118 (343)
..|= ++++..=.+++.+++||++++....|-++++.++.
T Consensus 66 i~QE--vitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~ 104 (108)
T PF04342_consen 66 IIQE--VITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVY 104 (108)
T ss_pred HHHH--HHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhh
Confidence 2222 23444447789999999999998888887766543
No 85
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=52.63 E-value=2.7e+02 Score=28.40 Aligned_cols=76 Identities=11% Similarity=0.063 Sum_probs=51.9
Q ss_pred HHHHHHHHhHhhcccCc---ccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhccccCCCCC
Q 019292 223 VITQLNYLNMALDTFNT---AVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTREPDT 298 (343)
Q Consensus 223 ~l~Q~~~Ln~aL~~~~a---~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs~~~~~~~ 298 (343)
-..|-.|+.-.-|.-|. ..++-+.|++.....++++.++=+-.+++++..+.-..-+..++.....+++.-+.|++
T Consensus 104 ~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r 182 (403)
T PF03209_consen 104 HASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPR 182 (403)
T ss_pred hHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 56788888777776655 66788888888876666665544445567787777666666656555666665555555
No 86
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=50.77 E-value=2e+02 Score=30.85 Aligned_cols=199 Identities=12% Similarity=0.142 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheee----EeecC
Q 019292 50 EPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI----VLHAP 125 (343)
Q Consensus 50 ~p~W~~G~~~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~v----v~~ap 125 (343)
+++|..++....-+..+-...+.+=|..-.+.-+- ..-.+|++.+.||+|.+|.+.|.+++ -+.+.
T Consensus 194 ~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~----------~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~ 263 (599)
T PF06609_consen 194 GWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGR----------KLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGY 263 (599)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccc----------cCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCC
Q ss_pred CccCcCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccCCC-cchhHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCc
Q 019292 126 LEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQ-TNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGL 204 (343)
Q Consensus 126 ~~~~~~s~~el~~~~~~p~fl~y~~v~~~~~~~Li~~~~~r~g~-~~~l~y~~i~gllg~~tvl~~K~v~~~l~~~~~g~ 204 (343)
...+=.|. -+-..+++..+++.++.+.++++. |++++ ..
T Consensus 264 ~~~~W~Sa------------~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~----------------------------P~ 303 (599)
T PF06609_consen 264 PYYPWKSA------------HVIAPLVIGFVLLVAFVVWEWFGAPKDPLF----------------------------PH 303 (599)
T ss_pred CCCCCCCc------------cchhhHHHHHHHHHHHHHhhhhccCCCCcC----------------------------CH
Q ss_pred cccchhHHHHHHHHH---HHHHHHH--HHHHhHhhcccCcccc---cchhHhHHhHHHHHHHHHHhccccCCCHHHHHHH
Q 019292 205 NQAKCIETWIFAMVA---LTCVITQ--LNYLNMALDTFNTAVV---SPIYYAMFTSFTIFASAIMFKDYSGQSASSIASE 276 (343)
Q Consensus 205 ~~~~~~~~y~~l~~~---~~~~l~Q--~~~Ln~aL~~~~a~~v---~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~ 276 (343)
..|+++..+...++. ......+ ..|-+.....|+.... .-.+......+++..|.+++.=..+.-...=-.+
T Consensus 304 ~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~l 383 (599)
T PF06609_consen 304 RLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQL 383 (599)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHH
Q ss_pred HHHHHHHHHhhhhccccCCCCC
Q 019292 277 LCGFITVLSGTSVLHSTREPDT 298 (343)
Q Consensus 277 ~~G~~~ii~GV~lLs~~~~~~~ 298 (343)
+.|.+.+..++-+++..+.++.
T Consensus 384 i~~~~~~ta~~Gama~~~~~n~ 405 (599)
T PF06609_consen 384 IFGSVLMTAFCGAMAAVRPDNK 405 (599)
T ss_pred HHHHHHHHHHHHHHHHccCCCc
No 87
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=50.48 E-value=1.9e+02 Score=26.00 Aligned_cols=56 Identities=16% Similarity=0.080 Sum_probs=35.2
Q ss_pred HHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhh
Q 019292 226 QLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTS 288 (343)
Q Consensus 226 Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~ 288 (343)
|-.+.+..++.+|++ ..-+...+-...+.+.+..+|+|. .++. ...|..+++.|++
T Consensus 165 ~~~~v~~vlk~~~~~-~~~~~~~~~~~~s~lls~~~f~~~--ls~~----~~~g~~lV~~~~~ 220 (222)
T TIGR00803 165 GGLCIGGVVRYADNT-TKSFVTALSIILSTLASVRLFDAK--ISST----FYLGAILVFLATF 220 (222)
T ss_pred cCceeeehhHHhHHH-HHHHHHHHHHHHHHHHHHHHhcCC--ccHH----HHHHHHHHHeeeE
Confidence 333566777777766 444555566677788888888873 3444 3455556666654
No 88
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=47.87 E-value=1.6e+02 Score=27.15 Aligned_cols=90 Identities=23% Similarity=0.343 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-hhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHH---HHHHhhcchhh--
Q 019292 5 NLIGFILAVVSSAFIGSSFIIKKK-GLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIAN---FVAYIYAPAVL-- 78 (343)
Q Consensus 5 ~~iGv~LAl~ss~~~a~g~vlqk~-~~~~~~~~~~r~~~~~~~~l~~p~W~~G~~~~~~g~i~~---~~Al~~ap~sl-- 78 (343)
...|++--++.++..|+..-+..+ ..+--+++ -+||.||=+++...+....| +.+-+|.|.++
T Consensus 123 ~~~GlItlll~a~vgGfamy~my~y~yr~~ad~-----------sqr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~ 191 (226)
T COG4858 123 QVYGLITLLLTAVVGGFAMYIMYYYAYRMRADN-----------SQRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNP 191 (226)
T ss_pred cchhHHHHHHHHHhhhHHHHHHHHHHHHhhccc-----------ccCCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCc
Confidence 345666666666666666544444 22111111 23688888887776666655 34566777775
Q ss_pred hhcchhhHHHHHHHHH-HHHhccccccc
Q 019292 79 VTPLGALSIIVSAVLA-HFMLNEKLQKM 105 (343)
Q Consensus 79 V~Plga~~lv~~~~la-~~~l~e~~~~~ 105 (343)
.-|--++.++-.++++ +|++|+|.+.+
T Consensus 192 ~L~pi~l~IiGav~lalRfylkkk~NIq 219 (226)
T COG4858 192 QLPPIALTIIGAVILALRFYLKKKKNIQ 219 (226)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3344455555555555 66778887754
No 89
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=47.77 E-value=2.7e+02 Score=26.93 Aligned_cols=81 Identities=7% Similarity=0.011 Sum_probs=49.5
Q ss_pred cccchhHHHHHHHHHHHH-HHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Q 019292 205 NQAKCIETWIFAMVALTC-VITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITV 283 (343)
Q Consensus 205 ~~~~~~~~y~~l~~~~~~-~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~i 283 (343)
..+.+|..-...+.+.++ ...--..-.-||++-++.. .-+..+..+..+-+.|.++++|. .++.||+...+= +..
T Consensus 201 ~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~-F~~LlSLePa~aAl~G~i~L~e~--ls~~qwlaI~~V-iaA 276 (292)
T COG5006 201 PALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPART-FGTLLSLEPALAALSGLIFLGET--LTLIQWLAIAAV-IAA 276 (292)
T ss_pred hhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhH-HHHHHHhhHHHHHHHHHHHhcCC--CCHHHHHHHHHH-HHH
Confidence 456666655444433333 3322233344888877653 34556788889999999999995 467777665543 344
Q ss_pred HHhhhh
Q 019292 284 LSGTSV 289 (343)
Q Consensus 284 i~GV~l 289 (343)
..|+.+
T Consensus 277 saG~~l 282 (292)
T COG5006 277 SAGSTL 282 (292)
T ss_pred Hhcccc
Confidence 555554
No 90
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=46.76 E-value=17 Score=30.88 Aligned_cols=43 Identities=7% Similarity=0.104 Sum_probs=31.3
Q ss_pred HHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhccccCCCCC
Q 019292 256 FASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTREPDT 298 (343)
Q Consensus 256 ~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs~~~~~~~ 298 (343)
+.-++.|--..+-++|+..++++.+++++.|+++|.++-..+.
T Consensus 20 LEemlW~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANR 62 (125)
T PF15048_consen 20 LEEMLWFFRVEDATPWNYSILALSFVVLVISFFLLGRSIQANR 62 (125)
T ss_pred HHHHHHheecCCCCCcchHHHHHHHHHHHHHHHHHHHHhHhcc
Confidence 3344533334456799999999999999999999977644433
No 91
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=46.67 E-value=2.5e+02 Score=26.73 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=32.3
Q ss_pred HhHHhHHHHHHHHH-----HhccccCCCHHHHHHHHHHHHHHHHhhhhccccCCCC
Q 019292 247 YAMFTSFTIFASAI-----MFKDYSGQSASSIASELCGFITVLSGTSVLHSTREPD 297 (343)
Q Consensus 247 ~v~~t~~~i~~g~i-----~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs~~~~~~ 297 (343)
+..|...+++.|.. +|++..+ .+..-.+=.+|.++++.|..+.+.-|+++
T Consensus 85 ~liW~s~n~l~Gw~~grfGlFg~~~~-~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 85 MLIWGSVNCLTGWASGRFGLFGLDPQ-VPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHHHHHHHHHHHhhceecccccc-ccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 45778888888776 5665443 45555555667777777777776655554
No 92
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=44.71 E-value=77 Score=30.72 Aligned_cols=80 Identities=14% Similarity=0.276 Sum_probs=52.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHH----HHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccc---ch----hhhHHHHh
Q 019292 46 GYLLEPLWWVGMFTMIVGEIANF----VAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQK---MG----MLGCLLCV 114 (343)
Q Consensus 46 ~~l~~p~W~~G~~~~~~g~i~~~----~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~---~~----~~G~~lii 114 (343)
.-+++|.-|.=++.++...+.|. -|+..-+.++|.|+--.......+++...+-+..+. .+ ..|+..++
T Consensus 205 ~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii 284 (300)
T PF05653_consen 205 NQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIII 284 (300)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 44556665544444444444332 378888999999999998888877777655433443 23 35888899
Q ss_pred hhheeeEeecC
Q 019292 115 VGSTMIVLHAP 125 (343)
Q Consensus 115 ~G~~~vv~~ap 125 (343)
.|+.++..+.+
T Consensus 285 ~GV~lL~~~~~ 295 (300)
T PF05653_consen 285 IGVFLLSSSKD 295 (300)
T ss_pred HhhheeeccCc
Confidence 99877744333
No 93
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=43.49 E-value=39 Score=26.11 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=35.9
Q ss_pred cccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhh
Q 019292 239 TAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTS 288 (343)
Q Consensus 239 a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~ 288 (343)
...++|+.|++-.++-++.+..-+.+..+.+|.-+...+.++...+.|.+
T Consensus 13 ~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~V 62 (76)
T PF11970_consen 13 SMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFV 62 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHH
Confidence 45678888888888888888888875555566666777777777766653
No 94
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=41.50 E-value=56 Score=27.95 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHH----HhccccccchhhhHHHHhhhhe
Q 019292 84 ALSIIVSAVLAHF----MLNEKLQKMGMLGCLLCVVGST 118 (343)
Q Consensus 84 a~~lv~~~~la~~----~l~e~~~~~~~~G~~lii~G~~ 118 (343)
.-+++.++++-|+ .-|+|++..+.+|.+++++|+.
T Consensus 99 ~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 99 AGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred HHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 3455666777776 4678999999999999999975
No 95
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=37.72 E-value=2e+02 Score=22.54 Aligned_cols=23 Identities=13% Similarity=0.327 Sum_probs=16.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHH
Q 019292 46 GYLLEPLWWVGMFTMIVGEIANF 68 (343)
Q Consensus 46 ~~l~~p~W~~G~~~~~~g~i~~~ 68 (343)
..+++|.||++++..++-.+-++
T Consensus 6 vR~kN~~~w~ali~~i~l~vq~~ 28 (84)
T PF04531_consen 6 VRFKNKAFWVALISAILLLVQQV 28 (84)
T ss_pred hcccCHHHHHHHHHHHHHHHHHH
Confidence 45789999999987655555444
No 96
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=36.76 E-value=2.5e+02 Score=25.41 Aligned_cols=87 Identities=22% Similarity=0.290 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHH---HHHhhcchhh---hhc
Q 019292 8 GFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANF---VAYIYAPAVL---VTP 81 (343)
Q Consensus 8 Gv~LAl~ss~~~a~g~vlqk~~~~~~~~~~~r~~~~~~~~l~~p~W~~G~~~~~~g~i~~~---~Al~~ap~sl---V~P 81 (343)
|+.--++.++..++.+.+-.+-..+... .-+++.||-.++..++..+.++ ....+.|..+ +.|
T Consensus 112 gi~tli~~~i~~G~~~~~~~~~i~~~~~-----------~~~r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~ 180 (206)
T PF06570_consen 112 GIITLILVSIVGGLVFYFIFKYIYPYKK-----------KKKRPSWWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPP 180 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccc-----------cccccHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCH
Confidence 5544455566666665544333322111 1123455555544444444333 2233345543 444
Q ss_pred chhhHHHHHHHHHHHHhccccccc
Q 019292 82 LGALSIIVSAVLAHFMLNEKLQKM 105 (343)
Q Consensus 82 lga~~lv~~~~la~~~l~e~~~~~ 105 (343)
...+-+-..+...++++|.|.+-+
T Consensus 181 ~~~iiig~i~~~~~~~lkkk~~i~ 204 (206)
T PF06570_consen 181 WVYIIIGVIAFALRFYLKKKYNIT 204 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444544455667888888887654
No 97
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=36.18 E-value=2.8e+02 Score=27.11 Aligned_cols=70 Identities=10% Similarity=0.006 Sum_probs=41.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHH
Q 019292 207 AKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCG 279 (343)
Q Consensus 207 ~~~~~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G 279 (343)
.++|.++..+.....-+-.|..-.=.|..+....... .=|-..|+++++.|.++|+|. .++.|++...++
T Consensus 66 ~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaS-LGY~InPL~~VllG~lflkEr--ls~~Q~iAV~lA 135 (293)
T COG2962 66 LKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEAS-LGYFINPLVNVLLGRLFLKER--LSRLQWIAVGLA 135 (293)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHH-hHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHH
Confidence 4567776666555555555554433344433332222 223456778999999999994 567777655544
No 98
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=33.62 E-value=3.6e+02 Score=26.67 Aligned_cols=188 Identities=14% Similarity=0.154 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecCCccCcCCHHHHHHH
Q 019292 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVL 139 (343)
Q Consensus 60 ~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap~~~~~~s~~el~~~ 139 (343)
-.++.-++..||-+..--...=-=+.=++--++...++-|+|.+..|.+-.+++..|+.++.++..+++...+.+|
T Consensus 93 n~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~---- 168 (327)
T KOG1581|consen 93 NTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRE---- 168 (327)
T ss_pred hhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCC----
Confidence 3566777888888776554443344556667888888999999999999999999999999888555422222111
Q ss_pred hcChhHHHHHHHHHHHHHHHHH---------HhcccC--CCcchhHHHHHHHhhhHHH-HHHHHHHHHHHHHHhcCcccc
Q 019292 140 ATQPAFLLYVGSVVAVALVLIL---------YCAPRY--GQTNILIYIGICSVIGSLT-VMSVKAIGIAIKLTLEGLNQA 207 (343)
Q Consensus 140 ~~~p~fl~y~~v~~~~~~~Li~---------~~~~r~--g~~~~l~y~~i~gllg~~t-vl~~K~v~~~l~~~~~g~~~~ 207 (343)
...+.+.. ....|.+ ..-+.+ ..-+++.|.=.++.+-..+ .+..+..-..++ ..-
T Consensus 169 ---ns~~G~~L----l~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~------F~~ 235 (327)
T KOG1581|consen 169 ---NSPIGILL----LFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVS------FIK 235 (327)
T ss_pred ---CchHhHHH----HHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHH------HHH
Confidence 11111100 0111110 011122 1223444443333222111 111111111000 112
Q ss_pred chhHHHHHHHHHHHH-HHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhcccc
Q 019292 208 KCIETWIFAMVALTC-VITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYS 266 (343)
Q Consensus 208 ~~~~~y~~l~~~~~~-~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~ 266 (343)
.||+.+.=++..-.| ++.|. |.--.+++|-+.. ..+....=-.+++..+.+.|+...
T Consensus 236 ~hp~~~~Di~l~s~~gavGQ~-FI~~TI~~FGslt-~t~I~ttRk~~si~lS~i~f~h~~ 293 (327)
T KOG1581|consen 236 EHPDVAFDILLYSTCGAVGQL-FIFYTIERFGSLT-FTTIMTTRKMVSIMLSCIVFGHPL 293 (327)
T ss_pred cChhHHHHHHHHHHhhhhhhh-eehhhHhhcccHH-HHHHHHHHHHHHHHHHHHHhCCcc
Confidence 477775544444445 66666 5556677776433 233344455678999999998743
No 99
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=33.39 E-value=92 Score=31.54 Aligned_cols=118 Identities=14% Similarity=0.231 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-cCCCCC--C---------------------CCCcccccch----hHHHH
Q 019292 5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAG-ANGARA--G---------------------SGGYGYLLEP----LWWVG 56 (343)
Q Consensus 5 ~~iGv~LAl~ss~~~a~g~vlqk~~~~~~~-~~~~r~--~---------------------~~~~~~l~~p----~W~~G 56 (343)
..+|-++|+.||+++|+=.++-||-.-+++ +-..+. | .+..+.-.++ .-..|
T Consensus 245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ 324 (416)
T KOG2765|consen 245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNN 324 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhh
Confidence 478999999999999999988887544332 100000 0 0001111111 01234
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhheeeEe
Q 019292 57 MFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122 (343)
Q Consensus 57 ~~~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~ 122 (343)
.+.-++..-+|..|...-...+++-=..+++..+++.=..+-+.+.+...++|.+.+.+|-+++-+
T Consensus 325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNI 390 (416)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheec
Confidence 444555666777777766666666666777887777666666888999999999999999766644
No 100
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=30.07 E-value=2.6e+02 Score=25.62 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=29.6
Q ss_pred HHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHH
Q 019292 229 YLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCG 279 (343)
Q Consensus 229 ~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G 279 (343)
+...|+++-+.....-+ +...|+.+.+.+..++|| +.+..++....+|
T Consensus 86 ~~~~a~~~~~~~~a~~l-~~~~Pi~~~lla~~~l~E--k~~~~~~l~~~~~ 133 (256)
T TIGR00688 86 LFIWAVNNGSSLEVSLG-YLINPLVMVALGRVFLKE--RISRFQFIAVIIA 133 (256)
T ss_pred HHHHHHHcchHHHHHHH-HHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHH
Confidence 44556666554433333 345778888888899998 4456665555444
No 101
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=29.76 E-value=2.8e+02 Score=22.89 Aligned_cols=84 Identities=15% Similarity=0.256 Sum_probs=47.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHhhcccCcccccc--hhHhHHhHHHHHHHHHHhcc-ccCCCHHHHHHHHHHHHHHH
Q 019292 208 KCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSP--IYYAMFTSFTIFASAIMFKD-YSGQSASSIASELCGFITVL 284 (343)
Q Consensus 208 ~~~~~y~~l~~~~~~~l~Q~~~Ln~aL~~~~a~~v~P--~~~v~~t~~~i~~g~i~f~E-~~~~~~~~~~~~~~G~~~ii 284 (343)
.|-.+|+++++....+.. .+-+ +++...-+ ...=.+=+..++.|..++-+ +.+.+....+-..+|..++-
T Consensus 5 ~Hi~sWvl~iIlf~~a~~--~~~~-----g~~k~~k~~~MilRl~YlliiisG~~L~~~~~~~~~~l~~iK~l~gl~vI~ 77 (110)
T PF07457_consen 5 IHITSWVLLIILFIVAYF--LYSK-----GKTKKAKILHMILRLFYLLIIISGVWLFIRTFAGNPMLYIIKMLLGLIVIG 77 (110)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhc-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 356678777776665442 1112 11111111 11112333466666666665 66767778888899987766
Q ss_pred HhhhhccccCCCCC
Q 019292 285 SGTSVLHSTREPDT 298 (343)
Q Consensus 285 ~GV~lLs~~~~~~~ 298 (343)
.-=..++|+++.++
T Consensus 78 lmEm~l~rkkk~k~ 91 (110)
T PF07457_consen 78 LMEMALARKKKGKP 91 (110)
T ss_pred HHHHHHHHHHcCCC
Confidence 66666777666544
No 102
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=27.84 E-value=93 Score=19.60 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 019292 4 SNLIGFILAVVSSAFIGSSF 23 (343)
Q Consensus 4 ~~~iGv~LAl~ss~~~a~g~ 23 (343)
.|++|+.+|..-++++++.+
T Consensus 5 aWilG~~lA~~~~i~~a~wl 24 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAMWL 24 (28)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999988754
No 103
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=27.62 E-value=2.2e+02 Score=26.37 Aligned_cols=58 Identities=21% Similarity=0.412 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCC-CCCCCc------ccccchhHHHHHHHHHHHH
Q 019292 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGAR-AGSGGY------GYLLEPLWWVGMFTMIVGE 64 (343)
Q Consensus 6 ~iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~~~r-~~~~~~------~~l~~p~W~~G~~~~~~g~ 64 (343)
++|+.+.+++-.+-.+++. ||+..++.+++..+ -.++.+ .|+-+-.+|.|+.++..+.
T Consensus 122 ~~g~~l~~~g~~~E~~AD~-Q~~~fk~~~~n~g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~ 186 (235)
T PF06966_consen 122 ILGIALFLIGFLLETVADQ-QKYRFKKDPANKGKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISS 186 (235)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhCcccCCccccCCeeeeeeCchHHHHHHHHHHHHHHHHhh
Confidence 6678888888777777774 55556665543211 122333 4555667888888876655
No 104
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.42 E-value=33 Score=33.42 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhccccccchhhhHHHHhhhh
Q 019292 62 VGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGS 117 (343)
Q Consensus 62 ~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~~~l~e~~~~~~~~G~~lii~G~ 117 (343)
++-..|-..|.+.|.+.=+===++..+||.+++..+||+|-+..-..+|.+++.|-
T Consensus 114 ~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF 169 (347)
T KOG1442|consen 114 LMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGF 169 (347)
T ss_pred eehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehh
Confidence 33345666778888776666668889999999999999999999888998888883
No 105
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=25.33 E-value=1.3e+02 Score=29.24 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=41.5
Q ss_pred HHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhccccC
Q 019292 223 VITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTR 294 (343)
Q Consensus 223 ~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs~~~ 294 (343)
.+.-++|-=+-+...|++++. -.-++++++-+.++++| +.+++ .++|..+.+.||+++.|.+
T Consensus 110 gvmlmyya~~~mslaDA~vIt----FssPvft~ifaw~~LkE--~~t~~----eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 110 GVMLMYYALMYMSLADAVVIT----FSSPVFTIIFAWAFLKE--PFTKF----EALGSLITLLGVVLIVRPP 171 (346)
T ss_pred HHHHHHHHHhhcchhheEEEE----ecChHHHHHHHHHHHcC--CCcHH----HHHHHHHhhheEEEEecCC
Confidence 445566655666667774432 11233577888999999 45565 5678888999999998643
No 106
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=25.13 E-value=6e+02 Score=24.19 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=30.4
Q ss_pred HHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHH
Q 019292 222 CVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVL 284 (343)
Q Consensus 222 ~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii 284 (343)
+.+.=.+.++--+++|+ .|++ .+|.-.-+..--..++|.++.++.++..+..|+++++
T Consensus 67 gi~~~s~~i~~ll~~yp----~~t~-~fF~GLIlgSip~l~k~~~~~~~~~~~~~~~g~~i~~ 124 (257)
T PF04018_consen 67 GILLFSKVISYLLENYP----IPTY-SFFFGLILGSIPFLYKEIKKFSPKSIIFFLLGAIIAL 124 (257)
T ss_pred HHHHHHHHHHHHHHhCH----HHHH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 34555555666666665 2222 2222222223334566666667777777777765444
No 107
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=25.04 E-value=58 Score=31.10 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhccccccchhhhHHHHhhhheeeEeecC
Q 019292 87 IIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (343)
Q Consensus 87 lv~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ap 125 (343)
=.|+.+.+-++.+.+++.++|+|++++..+...-+..+.
T Consensus 278 KfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 278 KFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 367888899999999999999999999999887666654
No 108
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=24.94 E-value=4.2e+02 Score=24.64 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=26.6
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHhHhh
Q 019292 173 LIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMAL 234 (343)
Q Consensus 173 l~y~~i~gllg~~tvl~~K~v~~~l~~~~~g~~~~~~~~~y~~l~~~~~~~l~Q~~~Ln~aL 234 (343)
+....+|+++||+...+.-..................+..+...++.+...+...+++.++.
T Consensus 12 ~~~illg~~iGg~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~ 73 (248)
T PF11368_consen 12 LLLILLGGLIGGFIGFFIGRIGNLLDNISFSTFFNIPWISFIALLIIIILFLLTFYFIYKSR 73 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777765554333221111000011223344444444444445444554554433
No 109
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=24.35 E-value=6.6e+02 Score=24.33 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHH
Q 019292 7 IGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIAN 67 (343)
Q Consensus 7 iGv~LAl~ss~~~a~g~vlqk~~~~~~~~~~~r~~~~~~~~l~~p~W~~G~~~~~~g~i~~ 67 (343)
..+...+.+.+..-.++...|+|.++..+.+.|-+ ..+.-...-.+|.++.++|.+..
T Consensus 47 ~~i~~~ii~lvl~iia~~~lr~GF~~L~~~~~~~~---iG~tG~~Lilig~il~iig~i~~ 104 (285)
T PF06157_consen 47 VAIISLIIGLVLGIIAFYRLRRGFRILSSYDRDVG---IGKTGATLILIGYILIIIGAILA 104 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc---chhhhhHHHHHHHHHHHHHHHHH
Confidence 34555566666666777778888776553221211 12322333445555555555533
No 110
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=24.25 E-value=1.2e+02 Score=19.38 Aligned_cols=20 Identities=15% Similarity=0.193 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 019292 4 SNLIGFILAVVSSAFIGSSF 23 (343)
Q Consensus 4 ~~~iGv~LAl~ss~~~a~g~ 23 (343)
.|++|+.+|+.-++++++-+
T Consensus 5 aWilG~~lA~~~~v~~a~w~ 24 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAMWL 24 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999988766
No 111
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=23.63 E-value=4.6e+02 Score=22.52 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=36.1
Q ss_pred CCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccCC--Ccc----hhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 019292 131 NSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYG--QTN----ILIYIGICSVIGSLTVMSVKAIGIAIKL 199 (343)
Q Consensus 131 ~s~~el~~~~~~p~fl~y~~v~~~~~~~Li~~~~~r~g--~~~----~l~y~~i~gllg~~tvl~~K~v~~~l~~ 199 (343)
.+.+|-.++++ +.++.|..+..++-+.++++.+.++. ++. ....+....++++......|..+...++
T Consensus 55 Tn~~Ea~ells-~~~~~~~l~~~vlP~~~l~~~~i~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~Rn 128 (156)
T PF08019_consen 55 TNTAEASELLS-WKLILWLLLLGVLPALLLWRVRIKKRSWKRELLRRLLLILLSLLVIAGIAFLFYKDYASFFRN 128 (156)
T ss_pred cCHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 45677777665 66677766666654455444433221 111 1222222334555566777777766653
No 112
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=23.48 E-value=2.1e+02 Score=23.12 Aligned_cols=53 Identities=9% Similarity=-0.008 Sum_probs=26.5
Q ss_pred CHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHhhhHH
Q 019292 132 SVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSL 185 (343)
Q Consensus 132 s~~el~~~~~~p~fl~y~~v~~~~~~~Li~~~~~r~g~~~~l~y~~i~gllg~~ 185 (343)
.-+++++.+.++.-.+|..+...+..++- ..+...+.++.++-+.+||+++-.
T Consensus 7 ~W~~ll~wl~~~~~~~~~a~lA~~mA~LR-~~Y~g~~~~r~llea~lCg~lal~ 59 (100)
T PF05106_consen 7 FWAQLLAWLQSHWPQIYGALLAFVMALLR-GAYGGGSWRRRLLEALLCGLLALF 59 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHH
Confidence 34555555553332333333322222221 112344556788889999987643
No 113
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=22.92 E-value=2e+02 Score=28.89 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=31.7
Q ss_pred hhhhcchhhHHHHHHHHHHHHhcc---------------------------ccccchhhhHHHHhhhheeeEeecCC
Q 019292 77 VLVTPLGALSIIVSAVLAHFMLNE---------------------------KLQKMGMLGCLLCVVGSTMIVLHAPL 126 (343)
Q Consensus 77 slV~Plga~~lv~~~~la~~~l~e---------------------------~~~~~~~~G~~lii~G~~~vv~~ap~ 126 (343)
.+.-|-.-++.+..++.+.+.=|| +.++.-+.++.+-..|++.+++++.-
T Consensus 167 ~V~iPat~ig~~~~a~~~~~~GkeL~~Dp~yq~rl~~g~~~~~~~~~~~~~~~~~~Ak~SV~iFl~gv~~VV~~g~f 243 (364)
T PF03605_consen 167 AVTIPATLIGVLVAAFVSSRRGKELDDDPEYQERLADGLVKPPIKEESTEKELPPSAKLSVLIFLLGVVAVVLYGSF 243 (364)
T ss_pred HhhHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHhccccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHc
Confidence 455566777777777777665222 23344467777777787777666543
No 114
>COG3952 Predicted membrane protein [Function unknown]
Probab=21.30 E-value=4.8e+02 Score=21.68 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=44.5
Q ss_pred HHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhccccCC
Q 019292 223 VITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTRE 295 (343)
Q Consensus 223 ~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs~~~~ 295 (343)
.+.|-.|.-+ ...-|+|+.+=.+.+.+-+.-.++|-. +.+|-.+++..||..+-+.-..+.++.+.
T Consensus 41 f~VQw~~se~-----a~rsv~P~~FW~~sllGg~l~L~Yfi~--~~DpV~Vl~~~~glF~~l~nL~L~~ker~ 106 (113)
T COG3952 41 FVVQWLASEH-----ANRSVIPVLFWYFSLLGGLLLLSYFIR--RQDPVFVLGQACGLFIYLRNLWLIIKERR 106 (113)
T ss_pred HHHHHHHHHh-----cCCCcchHHHHHHHHHhhHHHHHHHHH--hcchHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 3455544433 234578888766666555555555544 56799999999999999888888775544
No 115
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=21.22 E-value=6e+02 Score=27.65 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=32.7
Q ss_pred HHHHHHhccccc---cchhhhHHHHhhhheeeEeecCCccCcCCHHHHHHHhcChhHHHHHHHHHHHH
Q 019292 92 VLAHFMLNEKLQ---KMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVA 156 (343)
Q Consensus 92 ~la~~~l~e~~~---~~~~~G~~lii~G~~~vv~~ap~~~~~~s~~el~~~~~~p~fl~y~~v~~~~~ 156 (343)
++++++.|-+.+ +||++... ...|+. +...+|-.+-..+.||..+.+. +..+.|...+.+.+
T Consensus 214 ~~s~~f~~~~~~e~~~reilsAa-aAaGva-vaFgAPIGGVlFslEev~~~fp-~ktlw~sff~aLsA 278 (696)
T KOG0475|consen 214 IFSKIFPKYRLNEAKKREILSAA-AAAGVA-VAFGAPIGGVLFSLEEVSYYFP-LKTLWRSFFCALSA 278 (696)
T ss_pred hHhhhhhhhccchhHHHHHHHHH-hhccch-hhcCCccceeeeehhhhhhcCC-ccchHHHHHHHHHH
Confidence 344555444433 45555443 334432 3344566666678888774433 56666655555443
No 116
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=20.36 E-value=9.9e+02 Score=24.93 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=26.6
Q ss_pred HHhcccCCCcchhHHHHHHHhhhHHHHHHHHHHH
Q 019292 161 LYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIG 194 (343)
Q Consensus 161 ~~~~~r~g~~~~l~y~~i~gllg~~tvl~~K~v~ 194 (343)
-++..|+|||+.+....+-+++++......|...
T Consensus 81 ~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~ 114 (485)
T KOG0569|consen 81 GLLADRFGRKNALLLSNLLAVLAALLMGLSKSAP 114 (485)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567899999888877777888888888877644
Done!