Query 019292
Match_columns 343
No_of_seqs 166 out of 630
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 13:50:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.7 6.3E-08 2.1E-12 79.0 10.0 99 10-123 5-104 (110)
2 2i68_A Protein EMRE; transmemb 98.6 6.6E-08 2.3E-12 82.1 6.1 99 10-123 5-104 (137)
3 3b5d_A Multidrug transporter E 97.2 0.0051 1.8E-07 49.6 11.7 69 220-294 37-105 (110)
4 2i68_A Protein EMRE; transmemb 97.1 0.0012 4E-08 55.7 7.3 70 219-294 36-105 (137)
5 3o7q_A L-fucose-proton symport 23.8 4E+02 0.014 24.0 11.1 19 162-180 83-101 (438)
6 3arc_J Photosystem II reaction 14.5 1.5E+02 0.0052 19.2 2.9 18 49-66 7-26 (40)
7 3o7q_A L-fucose-proton symport 13.9 6.7E+02 0.023 22.4 13.9 21 45-65 252-272 (438)
8 4a2n_B Isoprenylcysteine carbo 9.9 7.7E+02 0.026 20.7 8.4 23 42-65 118-140 (194)
9 2ih3_C Voltage-gated potassium 8.7 3.7E+02 0.013 20.8 4.3 27 239-270 60-86 (122)
10 3eff_K Voltage-gated potassium 8.4 1.6E+02 0.0054 23.4 2.0 27 239-270 39-65 (139)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.72 E-value=6.3e-08 Score=78.99 Aligned_cols=99 Identities=13% Similarity=0.076 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhcc-hhhHHH
Q 019292 10 ILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPL-GALSII 88 (343)
Q Consensus 10 ~LAl~ss~~~a~g~vlqk~~~~~~~~~~~r~~~~~~~~l~~p~W~~G~~~~~~g~i~~~~Al~~ap~slV~Pl-ga~~lv 88 (343)
++-+.+.++-..+....|++. + ..+.+.++.+...+.++..+...|+...|++.+.|+ .+++.+
T Consensus 5 l~l~~a~~~e~~~~~~lK~s~------~---------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v 69 (110)
T 3b5d_A 5 IYLGGAILAEVIGTTLMKFSE------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhcc------C---------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHH
Confidence 455667788888888888851 0 112355667778889999999999999999999999 899999
Q ss_pred HHHHHHHHHhccccccchhhhHHHHhhhheeeEee
Q 019292 89 VSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH 123 (343)
Q Consensus 89 ~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ 123 (343)
++.+++.+++||+++..+++|+++++.|++++-..
T Consensus 70 ~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999877543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.57 E-value=6.6e-08 Score=82.05 Aligned_cols=99 Identities=13% Similarity=0.076 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhcc-hhhHHH
Q 019292 10 ILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPL-GALSII 88 (343)
Q Consensus 10 ~LAl~ss~~~a~g~vlqk~~~~~~~~~~~r~~~~~~~~l~~p~W~~G~~~~~~g~i~~~~Al~~ap~slV~Pl-ga~~lv 88 (343)
++-+++.++-..|.++.|++. . ..+.+.++.|+++++++..+...++...|++.+.|+ .+++.+
T Consensus 5 l~Ll~ail~ev~~~~~lK~s~---g------------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv 69 (137)
T 2i68_A 5 IYLGGAILAEVIGTTLMKFSE---G------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (137)
T ss_dssp HHHHHHHHHHHHHHHHC---------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc---c------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence 345667788888888888862 1 012345578888899999999999999999999999 999999
Q ss_pred HHHHHHHHHhccccccchhhhHHHHhhhheeeEee
Q 019292 89 VSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH 123 (343)
Q Consensus 89 ~~~~la~~~l~e~~~~~~~~G~~lii~G~~~vv~~ 123 (343)
++.+++.+++||+++..+++|++++++|++++...
T Consensus 70 ~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999877543
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.18 E-value=0.0051 Score=49.58 Aligned_cols=69 Identities=13% Similarity=0.215 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhccccC
Q 019292 220 LTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTR 294 (343)
Q Consensus 220 ~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs~~~ 294 (343)
+++...-..++++++++.|.+.++|+....-++.+.+.|.++|+|. .++.+ .+|..+++.||++++..+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~--~s~~~----~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR--LDLPA----IIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCC--CCHHH----HHHHHHHHHHHHHHhcCC
Confidence 3344444568888999999999999988889999999999999995 34544 578888999999997654
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.09 E-value=0.0012 Score=55.75 Aligned_cols=70 Identities=13% Similarity=0.207 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhHhhcccCcccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhccccC
Q 019292 219 ALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTR 294 (343)
Q Consensus 219 ~~~~~l~Q~~~Ln~aL~~~~a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lLs~~~ 294 (343)
.+++...-..++++++++.|.+..+|+....-++.+.+.|.++|+|.. ++. ..+|.++++.||+++.+.+
T Consensus 36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~l--s~~----~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL--DLP----AIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCC--CHH----HHHHHHHHHHHHHHHhcCC
Confidence 334444456688999999999999999878889999999999999954 343 3578888999999997654
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=23.84 E-value=4e+02 Score=23.97 Aligned_cols=19 Identities=5% Similarity=-0.228 Sum_probs=11.5
Q ss_pred HhcccCCCcchhHHHHHHH
Q 019292 162 YCAPRYGQTNILIYIGICS 180 (343)
Q Consensus 162 ~~~~r~g~~~~l~y~~i~g 180 (343)
+...|+|+|+.+..+.+..
T Consensus 83 ~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 83 ILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHH
Confidence 4556788887765544433
No 6
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=14.51 E-value=1.5e+02 Score=19.23 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=11.7
Q ss_pred cchhHHHHHHH--HHHHHHH
Q 019292 49 LEPLWWVGMFT--MIVGEIA 66 (343)
Q Consensus 49 ~~p~W~~G~~~--~~~g~i~ 66 (343)
|-|+|++|.+. .+++.++
T Consensus 7 RiPLWlvgtv~G~~vi~~~g 26 (40)
T 3arc_J 7 RIPLWIVATVAGMGVIVIVG 26 (40)
T ss_dssp SSCHHHHHHHHHHHHHHHHH
T ss_pred cccEEeeeeehhhhhhheee
Confidence 56999999865 3344443
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=13.92 E-value=6.7e+02 Score=22.38 Aligned_cols=21 Identities=5% Similarity=-0.116 Sum_probs=12.4
Q ss_pred cccccchhHHHHHHHHHHHHH
Q 019292 45 YGYLLEPLWWVGMFTMIVGEI 65 (343)
Q Consensus 45 ~~~l~~p~W~~G~~~~~~g~i 65 (343)
++.+++|.+|..++.......
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~ 272 (438)
T 3o7q_A 252 SRLARIRHWRWAVLAQFCYVG 272 (438)
T ss_dssp HHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHH
Confidence 356677777776665544333
No 8
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=9.89 E-value=7.7e+02 Score=20.71 Aligned_cols=23 Identities=13% Similarity=0.410 Sum_probs=15.2
Q ss_pred CCCcccccchhHHHHHHHHHHHHH
Q 019292 42 SGGYGYLLEPLWWVGMFTMIVGEI 65 (343)
Q Consensus 42 ~~~~~~l~~p~W~~G~~~~~~g~i 65 (343)
++.+++.|+|.. .|.+++.+|..
T Consensus 118 ~G~y~~vRHP~Y-~G~~l~~~g~~ 140 (194)
T 4a2n_B 118 EGIYKNIRHPMY-AHLWLWVITQG 140 (194)
T ss_dssp SSTTTTBSSHHH-HHHHHHHHHHH
T ss_pred cCcchhccCccH-HHHHHHHHHHH
Confidence 367899999974 55555555543
No 9
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=8.70 E-value=3.7e+02 Score=20.80 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=17.3
Q ss_pred cccccchhHhHHhHHHHHHHHHHhccccCCCH
Q 019292 239 TAVVSPIYYAMFTSFTIFASAIMFKDYSGQSA 270 (343)
Q Consensus 239 a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~ 270 (343)
.+....+|+++-|..++. |+|..+.++
T Consensus 60 ~~~~~a~y~~~~T~tTvG-----yGDi~P~t~ 86 (122)
T 2ih3_C 60 ITYPRALWWACETATTVA-----YGDLYPVTL 86 (122)
T ss_dssp CSHHHHHHHHHHHHTTCC-----CSSSCCCSH
T ss_pred Cccccchhheeeeeeeee-----cCCCCCCCc
Confidence 355666777766666554 778766554
No 10
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=8.37 E-value=1.6e+02 Score=23.39 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=18.0
Q ss_pred cccccchhHhHHhHHHHHHHHHHhccccCCCH
Q 019292 239 TAVVSPIYYAMFTSFTIFASAIMFKDYSGQSA 270 (343)
Q Consensus 239 a~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~ 270 (343)
.+....+|+++-|..++. |+|..+.++
T Consensus 39 ~~~~~a~yf~~~T~tTvG-----yGd~~P~t~ 65 (139)
T 3eff_K 39 ITYPRALWWSVETATTVG-----YGDLYPVTL 65 (139)
T ss_dssp CCHHHHHHHHHHHHTTCC-----CSSSCCCSS
T ss_pred CCHHHHHHHHheeeeccc-----CCCCcCCCc
Confidence 355667777777776655 888776554
Done!