Query 019292
Match_columns 343
No_of_seqs 166 out of 630
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 13:50:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019292.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019292hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 38.0 34 0.0025 29.0 7.2 16 162-177 81-96 (447)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 13.8 81 0.0059 18.2 3.0 11 49-59 1-11 (34)
3 d1r3jc_ f.14.1.1 (C:) Potassiu 13.7 80 0.0058 22.1 3.8 42 241-290 41-82 (103)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 5.8 2.8E+02 0.021 15.9 3.2 22 210-231 16-37 (37)
5 d1q90b_ f.21.1.2 (B:) Cytochro 4.9 6.7E+02 0.049 19.6 6.4 38 50-94 112-149 (212)
6 d1xl4a2 f.14.1.1 (A:23-138) In 4.9 4.6E+02 0.033 17.9 4.8 42 240-289 60-101 (116)
7 d1rh5a_ f.41.1.1 (A:) Preprote 4.8 3.8E+02 0.028 23.4 5.1 70 43-115 101-174 (422)
8 d1rzhh2 f.23.10.1 (H:11-35) Ph 4.6 2.9E+02 0.021 14.6 2.6 11 209-219 7-17 (26)
9 d2p7tc1 f.14.1.1 (C:86-119) Po 4.3 2.6E+02 0.019 15.5 2.2 24 77-100 10-33 (34)
10 d1ciia1 f.1.1.1 (A:451-624) Co 4.1 1E+02 0.0075 24.4 0.4 45 60-104 124-169 (174)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=37.99 E-value=34 Score=28.97 Aligned_cols=16 Identities=13% Similarity=-0.197 Sum_probs=9.8
Q ss_pred HhcccCCCcchhHHHH
Q 019292 162 YCAPRYGQTNILIYIG 177 (343)
Q Consensus 162 ~~~~r~g~~~~l~y~~ 177 (343)
+...|+|+|+.+..+.
T Consensus 81 ~l~Dr~g~r~~~~~~~ 96 (447)
T d1pw4a_ 81 SVSDRSNPRVFLPAGL 96 (447)
T ss_dssp HHHHHSCHHHHHHHHH
T ss_pred HHHHHcCchHHHHHHH
Confidence 4456778777655443
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.84 E-value=81 Score=18.17 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=8.4
Q ss_pred cchhHHHHHHH
Q 019292 49 LEPLWWVGMFT 59 (343)
Q Consensus 49 ~~p~W~~G~~~ 59 (343)
|-|+|++|...
T Consensus 1 riPLWlv~tv~ 11 (34)
T d2axtj1 1 RIPLWIVATVA 11 (34)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcEEEeeehh
Confidence 45899988765
No 3
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=13.71 E-value=80 Score=22.14 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=22.6
Q ss_pred cccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhhc
Q 019292 241 VVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVL 290 (343)
Q Consensus 241 ~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~lL 290 (343)
....+|+++-|+.++. |+|..+.++. +-+++++.++.|+.+.
T Consensus 41 ~~~aly~~~vT~tTvG-----YGDi~P~t~~---gr~~~~~~~~~Gi~~~ 82 (103)
T d1r3jc_ 41 YPRALWWSVETATTVG-----YGDLYPVTLW---GRCVAVVVMVAGITSF 82 (103)
T ss_dssp HHHHHHHHHHHHTTCC-----CSSSCCCSHH---HHHHHHHHHHHHHHHH
T ss_pred hhhhhhhheeeecccc-----cCccccCChh---HHHHHHHHHHHHHHHH
Confidence 4445666666665544 7887665543 3334444455555443
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.81 E-value=2.8e+02 Score=15.92 Aligned_cols=22 Identities=5% Similarity=0.075 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 019292 210 IETWIFAMVALTCVITQLNYLN 231 (343)
Q Consensus 210 ~~~y~~l~~~~~~~l~Q~~~Ln 231 (343)
-..|-++++.+.+++.-.+|+|
T Consensus 16 sLy~GlLlifvl~vLFssYfFN 37 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhcC
Confidence 3445666666666777777765
No 5
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.92 E-value=6.7e+02 Score=19.64 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=24.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHH
Q 019292 50 EPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLA 94 (343)
Q Consensus 50 ~p~W~~G~~~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la 94 (343)
+-.|+.|+.++.+-....|..| +-|-+..+.=-..+..
T Consensus 112 e~~W~~Gv~l~~l~m~~aftGY-------~Lpw~q~sywa~~V~~ 149 (212)
T d1q90b_ 112 ELTWVTGVIMAVCTVSFGVTGY-------SLPWDQVGYWAVKIVT 149 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HTTCBHHHHHHHHHHH
T ss_pred cceehHhHHHHHHHHHHHHhhh-------hcchhhHHHHHHHHHH
Confidence 3469999988866666555554 4577777665444443
No 6
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=4.86 E-value=4.6e+02 Score=17.90 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=23.2
Q ss_pred ccccchhHhHHhHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhhhh
Q 019292 240 AVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSV 289 (343)
Q Consensus 240 ~~v~P~~~v~~t~~~i~~g~i~f~E~~~~~~~~~~~~~~G~~~ii~GV~l 289 (343)
+....+|+++-|..++. |+|..+.+ ....++..+.++.|+.+
T Consensus 60 ~~~~a~yfs~~T~tTvG-----YGDi~P~t---~~~r~~~~~~~~~G~~~ 101 (116)
T d1xl4a2 60 SFTDAFFFSVQTMATIG-----YGKLIPIG---PLANTLVTLEALCGMLG 101 (116)
T ss_dssp CHHHHHHHHHHHHTTCC-----CSSSCCCH---HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCC-----CCccccCC---cHHHHHHHHHHHHHHHH
Confidence 44556677766666555 77866543 33344444455555544
No 7
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.78 E-value=3.8e+02 Score=23.41 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=35.7
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHH---HHhccccccchhh-hHHHHhh
Q 019292 43 GGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAH---FMLNEKLQKMGML-GCLLCVV 115 (343)
Q Consensus 43 ~~~~~l~~p~W~~G~~~~~~g~i~~~~Al~~ap~slV~Plga~~lv~~~~la~---~~l~e~~~~~~~~-G~~lii~ 115 (343)
++++.+.+-..+..+.+.++-......+..+. ...|....-++..+..+. .+++|.++.+++- |+-+++.
T Consensus 101 ~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~---~~~~~~~~~iv~~L~aGt~~lmwL~E~It~~GiGnGiSLiI~ 174 (422)
T d1rh5a_ 101 ENRALFQGCQKLLSIIMCFVEAVLFVGAGAFG---ILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIA 174 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHH
Confidence 34566656666666666544333222221221 233433333343333333 3569999998876 6655543
No 8
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.60 E-value=2.9e+02 Score=14.60 Aligned_cols=11 Identities=27% Similarity=0.456 Sum_probs=6.2
Q ss_pred hhHHHHHHHHH
Q 019292 209 CIETWIFAMVA 219 (343)
Q Consensus 209 ~~~~y~~l~~~ 219 (343)
-|.+|.++..+
T Consensus 7 iw~fw~ffall 17 (26)
T d1rzhh2 7 IYSFWIFLAGL 17 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46666655444
No 9
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=4.34 E-value=2.6e+02 Score=15.55 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=13.6
Q ss_pred hhhhcchhhHHHHHHHHHHHHhcc
Q 019292 77 VLVTPLGALSIIVSAVLAHFMLNE 100 (343)
Q Consensus 77 slV~Plga~~lv~~~~la~~~l~e 100 (343)
..|+.+.+.++++.++-..+.=+|
T Consensus 10 vmvagits~glv~aa~atwfvgre 33 (34)
T d2p7tc1 10 VMVAGITSFGLVTAALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccchhhhHHHHHHHHhhccc
Confidence 345566666777766654444333
No 10
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=4.11 E-value=1e+02 Score=24.41 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcchhhhhcchhhHH-HHHHHHHHHHhcccccc
Q 019292 60 MIVGEIANFVAYIYAPAVLVTPLGALSI-IVSAVLAHFMLNEKLQK 104 (343)
Q Consensus 60 ~~~g~i~~~~Al~~ap~slV~Plga~~l-v~~~~la~~~l~e~~~~ 104 (343)
+++|.....++..+.|..+=+|+|.+++ +...+.+.++-...+..
T Consensus 124 ~~~g~~asav~a~~fs~~~g~~lgi~g~ali~~~v~a~Idd~~v~~ 169 (174)
T d1ciia1 124 IIAGNAATALVALVFSILTGSALGIIGYGLLMAVTGALIDESLVEK 169 (174)
T ss_dssp TBTTCBHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCHHHHHH
Done!