BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019296
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GAK|A Chain A, Crystal Structure Of Acyl-Acp Thioesterase From Spirosoma
Linguale
Length = 250
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 22/240 (9%)
Query: 56 FVYRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIW 115
F+ TF++R YE ++ L NL QE+A + G+ +++ + + W
Sbjct: 6 FIQTDTFTLRGYECDAFGRXSIPALXNLXQESANRNAIDYGIG------IADLAQKGVGW 59
Query: 116 VVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRT----QDIITRATSTWV 171
+ R +++ +Y +GD +++ T+ + + +I RD+R ++ A STW+
Sbjct: 60 XLXRFCLRIHQYPRYGDTIQLXTY-----PTTVDKYFIHRDFRVLATDGTLLADARSTWL 114
Query: 172 IMNRETRRLSKIPEQVRQEVLPFYLNTFAIDKEKTDVGKIDKLTDQTAGRIRSGLAPRWS 231
+ + E R +P+ +RQ P ++ K D + + ++ G W
Sbjct: 115 VFSXEKRSXVPLPDFIRQLSPPANVDPLPALPLKPDF-QTASFATAASKSVQVG----WL 169
Query: 232 DMDANQHVNNVKYIGWILESVPIHVLEDYNMTSMTLEYRRECRQSNLL--ESLTSTTASV 289
++D NQHVNNV Y+ W+LE V +++ + + L YR E + L +S+T T SV
Sbjct: 170 NIDQNQHVNNVAYVQWLLEGVDSEIVQTREIAEIDLVYRTESHWHDWLSVQSVTETDNSV 229
>pdb|2OWN|A Chain A, Crystal Structure Of Oleoyl Thioesterase (Putative)
(Np_784467.1) From Lactobacillus Plantarum At 2.00 A
Resolution
pdb|2OWN|B Chain B, Crystal Structure Of Oleoyl Thioesterase (Putative)
(Np_784467.1) From Lactobacillus Plantarum At 2.00 A
Resolution
Length = 262
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 103/238 (43%), Gaps = 33/238 (13%)
Query: 57 VYRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATRE-MSLRKLIW 115
+Y + I YE AT+ TL+++ V +S + G T E + + W
Sbjct: 11 LYSEQHRITYYECDRTGRATLTTLIDIA-------VLASEDQSDALGLTTEXVQSHGVGW 63
Query: 116 VVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWVIMNR 175
VVT+ I + R +VV I A R++ IRD Q + TS WV ++
Sbjct: 64 VVTQYAIDITRXPRQDEVVTIAVRGSAYNPYFAYREFWIRDADGQQL-AYITSIWVXXSQ 122
Query: 176 ETRRLSKIPEQVRQEVLPFYLNTFAIDKEKTDVGKIDKLT-----DQTAGRIRSGLAPRW 230
TRR+ KI ++ V P+ + V +I +L + T I R+
Sbjct: 123 TTRRIVKILPEL---VAPY---------QSEVVKRIPRLPRPISFEATDTTITKPYHVRF 170
Query: 231 SDMDANQHVNNVKYIGWILESVPIHVLEDYNMTSMTLEYRRECR-------QSNLLES 281
D+D N+HVNN Y W+++++P L +++ + + Y E + +N+L S
Sbjct: 171 FDIDPNRHVNNAHYFDWLVDTLPATFLLQHDLVHVDVRYENEVKYGQTVTAHANILPS 228
>pdb|2ESS|A Chain A, Crystal Structure Of An Acyl-Acp Thioesterase
(Np_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.90 A Resolution
Length = 248
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 85/197 (43%), Gaps = 14/197 (7%)
Query: 62 FSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIH 121
F + + + T L N L A H + GFG ++ WV++R+
Sbjct: 13 FVAEPFHVDFNGRLTXGVLGNHLLNCAGFHASD-----RGFGIAT-LNEDNYTWVLSRLA 66
Query: 122 IQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWVIMNRETRRLS 181
I++ + + TWV+ + R++ + D + I A S W +N TR+ +
Sbjct: 67 IELDEXPYQYEKFSVQTWVENVYRLFTDRNFAVID-KDGKKIGYARSVWAXINLNTRKPA 125
Query: 182 KIPEQVRQEVLPFYLNTFAIDKEKTDVGKIDKLTDQTAGRIRSGLAPRWSDMDANQHVNN 241
+ ++ + I E + K ++ T+ + + L ++SD+D N HVN+
Sbjct: 126 DLLALHGGSIVDY------ICDEPCPIEKPSRIK-VTSNQPVATLTAKYSDIDINGHVNS 178
Query: 242 VKYIGWILESVPIHVLE 258
++YI IL+ PI + +
Sbjct: 179 IRYIEHILDLFPIELYQ 195
>pdb|2FUJ|A Chain A, A Putative Acyl-Coa Thioesterase From Xanthomonas
Campestris (Xc229)
Length = 137
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 223 RSGLAPRWSDMDANQHVNNVKYIGWILES 251
R ++ RW DMD+ HVNN KYI ++ E+
Sbjct: 12 RVPISVRWRDMDSMGHVNNAKYISYLEEA 40
>pdb|3ING|A Chain A, Crystal Structure Of Homoserine Dehydrogenase
(Np_394635.1) From Thermoplasma Acidophilum At 1.95 A
Resolution
Length = 325
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 223 RSGLAPRWSDM--DANQHVNNVKYIGWILESVPIHVLEDYNM 262
+SGLA +W D+ ANQ+ ++Y + VP+ + DY++
Sbjct: 118 KSGLANKWHDIXDSANQNSKYIRYEATVAGGVPLFSVLDYSI 159
>pdb|2AV9|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|B Chain B, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|C Chain C, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|D Chain D, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|E Chain E, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|F Chain F, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|G Chain G, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|H Chain H, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|I Chain I, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|J Chain J, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|K Chain K, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|L Chain L, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1
Length = 147
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 229 RWSDMDANQHVNNVKYIGWILESVPIHVLE 258
RW D D HVNNV Y + +V +++E
Sbjct: 21 RWHDNDIYGHVNNVTYYAFFDTAVNTYLIE 50
>pdb|2O5U|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (c222).
pdb|2O5U|B Chain B, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (c222).
pdb|2O5U|C Chain C, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (c222)
Length = 148
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 229 RWSDMDANQHVNNVKYIGWILESVPIHVLE 258
RW D D HVNNV Y + +V +++E
Sbjct: 22 RWHDNDIYGHVNNVTYYAFFDTAVNTYLIE 51
>pdb|1G4U|S Chain S, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
pdb|1G4W|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp
Length = 383
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 110 LRKLIWVVTRIHIQVQRYSSWGDV-VEIDTWVD 141
L + +T I + V R+S WG E++ WVD
Sbjct: 67 LNDYVTTLTNIQVGVARFSQWGTCGGEVERWVD 99
>pdb|2O6B|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- New Crystal Form.
pdb|2O6B|B Chain B, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- New Crystal Form.
pdb|2O6T|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|C Chain C, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|E Chain E, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|G Chain G, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|I Chain I, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|K Chain K, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6U|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- New Crystal Form.
pdb|2O6U|B Chain B, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- New Crystal Form
Length = 149
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 229 RWSDMDANQHVNNVKYIGWILESVPIHVLE 258
RW D D HVNNV Y + +V +++E
Sbjct: 23 RWHDNDIYGHVNNVTYYAFFDTAVNTYLIE 52
>pdb|3IK5|A Chain A, Sivmac239 Nef In Complex With Tcr Zeta Itam 1 Polypeptide
(A63-R80)
pdb|3IK5|C Chain C, Sivmac239 Nef In Complex With Tcr Zeta Itam 1 Polypeptide
(A63-R80)
pdb|3IOZ|A Chain A, Sivmac239 Nef In Complex With A Tcr Zeta Polypeptide Dp1
(L51-D93)
Length = 143
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 225 GLAPRWSDMDANQHVNNVKYIGWILESVPIHV 256
G+ P W D + + K GW+ + VP++V
Sbjct: 59 GIIPDWQDYTSGPGIRYPKTFGWLWKLVPVNV 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,265,005
Number of Sequences: 62578
Number of extensions: 346427
Number of successful extensions: 855
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 836
Number of HSP's gapped (non-prelim): 17
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)