Query 019296
Match_columns 343
No_of_seqs 364 out of 2212
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:18:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02370 acyl-ACP thioesterase 100.0 2.2E-55 4.7E-60 429.9 33.9 284 38-341 120-404 (419)
2 PF01643 Acyl-ACP_TE: Acyl-ACP 100.0 6.2E-53 1.3E-57 394.4 24.5 260 55-339 1-261 (261)
3 COG3884 FatA Acyl-ACP thioeste 100.0 8E-35 1.7E-39 258.6 18.1 239 57-339 3-241 (250)
4 PRK10800 acyl-CoA thioesterase 100.0 7.8E-28 1.7E-32 201.6 18.1 128 57-191 2-129 (130)
5 COG0824 FcbC Predicted thioest 99.9 5.2E-26 1.1E-30 192.9 17.4 131 55-193 3-133 (137)
6 TIGR02799 thio_ybgC tol-pal sy 99.9 6.6E-26 1.4E-30 188.1 16.2 124 58-189 1-125 (126)
7 TIGR00051 acyl-CoA thioester h 99.9 8.4E-25 1.8E-29 178.5 15.9 117 61-184 1-117 (117)
8 PF13279 4HBT_2: Thioesterase- 99.9 6.1E-22 1.3E-26 163.2 16.8 119 64-191 1-121 (121)
9 PRK07531 bifunctional 3-hydrox 99.9 1.2E-21 2.5E-26 198.8 18.7 136 52-195 340-475 (495)
10 cd00586 4HBT 4-hydroxybenzoyl- 99.8 3.6E-17 7.8E-22 129.9 15.2 110 58-174 1-110 (110)
11 COG0824 FcbC Predicted thioest 99.7 1.9E-17 4.1E-22 140.4 10.4 95 222-341 6-114 (137)
12 PRK10800 acyl-CoA thioesterase 99.7 1.4E-16 3.1E-21 133.2 10.5 94 224-341 5-112 (130)
13 PF13279 4HBT_2: Thioesterase- 99.6 3.4E-15 7.4E-20 122.8 10.6 91 228-342 1-106 (121)
14 TIGR02799 thio_ybgC tol-pal sy 99.6 2.9E-15 6.4E-20 124.0 10.1 93 224-341 3-110 (126)
15 TIGR00051 acyl-CoA thioester h 99.6 6.6E-15 1.4E-19 119.8 10.4 92 226-341 2-107 (117)
16 cd03442 BFIT_BACH Brown fat-in 99.4 6.4E-12 1.4E-16 102.9 15.8 114 55-184 5-123 (123)
17 PRK07531 bifunctional 3-hydrox 99.4 2.4E-12 5.2E-17 130.9 10.7 95 223-341 347-454 (495)
18 cd00586 4HBT 4-hydroxybenzoyl- 99.3 6.6E-12 1.4E-16 99.4 9.9 95 224-341 3-110 (110)
19 cd03440 hot_dog The hotdog fol 99.0 1.5E-08 3.2E-13 75.6 13.5 98 59-170 2-99 (100)
20 PF03061 4HBT: Thioesterase su 98.9 1.6E-08 3.5E-13 76.1 11.5 79 72-164 1-79 (79)
21 cd03442 BFIT_BACH Brown fat-in 98.8 6.9E-08 1.5E-12 78.8 10.5 96 223-341 9-114 (123)
22 cd03443 PaaI_thioesterase PaaI 98.7 4.5E-07 9.7E-12 72.9 14.4 100 57-171 13-112 (113)
23 PF01643 Acyl-ACP_TE: Acyl-ACP 98.7 1E-07 2.2E-12 89.3 10.3 97 54-170 162-259 (261)
24 PRK10694 acyl-CoA esterase; Pr 98.7 1.4E-06 2.9E-11 73.6 15.1 111 59-185 13-131 (133)
25 PLN02370 acyl-ACP thioesterase 98.6 2E-07 4.2E-12 92.4 10.9 98 222-341 140-256 (419)
26 PF03061 4HBT: Thioesterase su 98.6 3.9E-07 8.5E-12 68.4 8.6 72 236-331 1-79 (79)
27 cd03440 hot_dog The hotdog fol 98.5 9.2E-07 2E-11 65.7 9.9 89 225-337 4-99 (100)
28 PLN02647 acyl-CoA thioesterase 98.5 1.2E-05 2.6E-10 80.3 18.1 218 63-287 99-361 (437)
29 COG1607 Acyl-CoA hydrolase [Li 98.3 3E-05 6.5E-10 66.9 15.2 113 60-187 16-132 (157)
30 cd03443 PaaI_thioesterase PaaI 98.1 3.3E-05 7.2E-10 61.9 10.0 92 222-338 14-112 (113)
31 COG3884 FatA Acyl-ACP thioeste 98.0 2.1E-05 4.7E-10 71.1 8.7 89 56-170 151-239 (250)
32 TIGR00369 unchar_dom_1 unchara 97.9 0.00045 9.8E-09 56.4 13.5 98 59-171 19-116 (117)
33 TIGR02286 PaaD phenylacetic ac 97.8 0.00099 2.1E-08 54.2 13.9 96 60-172 18-113 (114)
34 PRK10293 acyl-CoA esterase; Pr 97.4 0.0068 1.5E-07 51.3 14.4 100 59-173 37-136 (136)
35 PRK10254 thioesterase; Provisi 97.3 0.019 4.1E-07 48.6 15.4 100 59-173 37-136 (137)
36 COG5496 Predicted thioesterase 97.2 0.015 3.3E-07 48.1 13.6 110 53-177 2-118 (130)
37 PRK11688 hypothetical protein; 97.1 0.017 3.7E-07 49.7 13.8 111 59-172 40-153 (154)
38 COG2050 PaaI HGG motif-contain 96.9 0.041 8.8E-07 46.5 13.6 104 58-175 36-139 (141)
39 KOG3328 HGG motif-containing t 96.8 0.024 5.3E-07 48.2 11.4 99 60-172 41-139 (148)
40 PLN02322 acyl-CoA thioesterase 96.6 0.13 2.9E-06 44.4 14.9 101 60-174 30-135 (154)
41 TIGR02286 PaaD phenylacetic ac 96.3 0.076 1.7E-06 42.9 11.1 94 223-339 17-113 (114)
42 cd03449 R_hydratase (R)-hydrat 96.3 0.054 1.2E-06 44.1 10.2 58 113-171 68-127 (128)
43 PRK10694 acyl-CoA esterase; Pr 96.2 0.077 1.7E-06 44.6 10.9 97 224-342 14-122 (133)
44 PLN02647 acyl-CoA thioesterase 96.0 0.24 5.2E-06 49.9 15.2 115 57-185 290-414 (437)
45 cd01288 FabZ FabZ is a 17kD be 95.5 0.47 1E-05 38.7 12.7 87 74-172 44-130 (131)
46 PLN02864 enoyl-CoA hydratase 95.3 2 4.2E-05 41.4 18.1 59 116-174 95-157 (310)
47 PF14539 DUF4442: Domain of un 95.2 0.39 8.5E-06 40.1 11.5 99 57-171 30-131 (132)
48 COG4109 Predicted transcriptio 95.2 0.16 3.4E-06 49.3 9.9 108 46-170 321-428 (432)
49 PRK11688 hypothetical protein; 95.0 0.27 5.8E-06 42.2 10.0 92 222-338 39-152 (154)
50 PRK00006 fabZ (3R)-hydroxymyri 94.9 1.3 2.7E-05 37.4 13.9 86 75-174 60-146 (147)
51 cd03455 SAV4209 SAV4209 is a S 94.6 0.28 6.1E-06 40.1 8.9 55 115-170 67-122 (123)
52 KOG4366 Predicted thioesterase 94.5 0.0073 1.6E-07 53.0 -0.9 107 61-174 54-161 (213)
53 TIGR02447 yiiD_Cterm thioester 94.4 1.9 4.2E-05 36.2 13.8 99 60-173 26-137 (138)
54 cd00556 Thioesterase_II Thioes 94.2 0.29 6.3E-06 37.8 7.9 58 113-171 41-98 (99)
55 TIGR00369 unchar_dom_1 unchara 94.2 0.82 1.8E-05 36.9 10.7 93 222-338 18-116 (117)
56 cd00493 FabA_FabZ FabA/Z, beta 94.1 1.8 3.9E-05 35.1 12.9 86 72-167 41-126 (131)
57 cd03447 FAS_MaoC FAS_MaoC, the 94.0 0.68 1.5E-05 38.4 10.0 55 116-170 69-123 (126)
58 PRK13691 (3R)-hydroxyacyl-ACP 93.8 0.86 1.9E-05 39.8 10.7 61 116-177 85-149 (166)
59 TIGR01750 fabZ beta-hydroxyacy 93.7 2.3 5.1E-05 35.4 12.9 87 74-171 52-139 (140)
60 PRK04424 fatty acid biosynthes 93.6 0.85 1.8E-05 40.5 10.5 58 113-172 124-181 (185)
61 cd03441 R_hydratase_like (R)-h 93.6 0.69 1.5E-05 37.3 9.2 56 113-169 66-125 (127)
62 PRK13692 (3R)-hydroxyacyl-ACP 93.2 1.2 2.6E-05 38.6 10.5 60 118-178 87-150 (159)
63 KOG4366 Predicted thioesterase 92.9 0.0075 1.6E-07 53.0 -3.6 84 230-336 59-156 (213)
64 cd03446 MaoC_like MoaC_like 92.7 0.67 1.4E-05 38.5 8.1 51 120-171 83-139 (140)
65 cd03454 YdeM YdeM is a Bacillu 92.7 0.57 1.2E-05 39.0 7.7 51 120-171 81-138 (140)
66 cd03449 R_hydratase (R)-hydrat 92.6 0.84 1.8E-05 36.9 8.4 54 262-336 72-125 (128)
67 cd03451 FkbR2 FkbR2 is a Strep 92.3 0.7 1.5E-05 38.7 7.7 52 120-172 84-142 (146)
68 cd03453 SAV4209_like SAV4209_l 92.3 0.99 2.2E-05 37.1 8.5 52 117-169 70-125 (127)
69 cd03453 SAV4209_like SAV4209_l 90.9 2.3 5.1E-05 34.8 9.3 58 260-336 68-125 (127)
70 COG1607 Acyl-CoA hydrolase [Li 90.5 5 0.00011 34.8 11.1 64 224-287 16-84 (157)
71 PF13452 MaoC_dehydrat_N: N-te 90.3 0.95 2E-05 37.2 6.4 52 113-165 73-131 (132)
72 cd03455 SAV4209 SAV4209 is a S 90.2 2.3 4.9E-05 34.7 8.6 55 260-336 67-121 (123)
73 cd03447 FAS_MaoC FAS_MaoC, the 88.6 3.5 7.7E-05 34.0 8.6 54 261-336 69-122 (126)
74 PRK08190 bifunctional enoyl-Co 88.5 3.5 7.5E-05 42.0 10.2 66 114-180 82-149 (466)
75 cd03452 MaoC_C MaoC_C The C-t 88.4 1.9 4.2E-05 36.2 7.1 52 120-172 81-138 (142)
76 PRK10293 acyl-CoA esterase; Pr 88.3 10 0.00022 31.8 11.4 93 221-339 35-135 (136)
77 cd03446 MaoC_like MoaC_like 87.1 3.6 7.8E-05 34.0 7.9 55 266-337 84-138 (140)
78 PF07977 FabA: FabA-like domai 86.7 17 0.00037 30.1 12.3 88 72-167 47-138 (138)
79 cd03445 Thioesterase_II_repeat 86.6 6.7 0.00014 30.7 8.7 53 116-170 40-92 (94)
80 PF13622 4HBT_3: Thioesterase- 86.5 4.6 9.9E-05 37.0 9.0 57 115-174 34-90 (255)
81 cd03441 R_hydratase_like (R)-h 86.2 7.6 0.00016 31.0 9.2 57 260-335 68-124 (127)
82 PRK13691 (3R)-hydroxyacyl-ACP 85.9 4.9 0.00011 35.0 8.3 57 265-340 89-145 (166)
83 PRK13188 bifunctional UDP-3-O- 85.4 35 0.00076 34.8 15.2 123 34-173 330-460 (464)
84 KOG3328 HGG motif-containing t 85.4 2.8 6E-05 35.8 6.2 92 221-336 38-136 (148)
85 COG2050 PaaI HGG motif-contain 85.3 11 0.00024 31.5 10.0 95 223-341 37-138 (141)
86 PRK13692 (3R)-hydroxyacyl-ACP 84.1 5.4 0.00012 34.5 7.7 55 265-338 89-143 (159)
87 cd03451 FkbR2 FkbR2 is a Strep 84.0 5 0.00011 33.4 7.3 58 265-338 84-141 (146)
88 PRK10254 thioesterase; Provisi 83.7 25 0.00053 29.6 11.3 93 221-338 35-134 (137)
89 cd03452 MaoC_C MaoC_C The C-t 82.9 4.6 0.0001 33.9 6.7 57 265-338 81-137 (142)
90 PRK00006 fabZ (3R)-hydroxymyri 82.1 8.8 0.00019 32.2 8.2 53 266-342 95-147 (147)
91 cd01289 FabA_like Domain of un 82.0 29 0.00062 29.0 13.9 120 37-170 10-134 (138)
92 PRK04424 fatty acid biosynthes 78.8 11 0.00023 33.4 7.8 53 263-339 129-181 (185)
93 cd03454 YdeM YdeM is a Bacillu 77.7 13 0.00028 30.7 7.7 57 265-337 81-137 (140)
94 PF13452 MaoC_dehydrat_N: N-te 77.4 6.5 0.00014 32.1 5.7 26 263-288 78-103 (132)
95 PF03756 AfsA: A-factor biosyn 77.3 39 0.00084 27.7 12.9 88 72-172 40-132 (132)
96 cd01287 FabA FabA, beta-hydrox 75.3 51 0.0011 28.1 12.1 93 72-173 49-147 (150)
97 PLN02322 acyl-CoA thioesterase 75.2 53 0.0012 28.3 11.1 94 222-339 28-133 (154)
98 cd01288 FabZ FabZ is a 17kD be 74.8 16 0.00036 29.4 7.5 51 264-338 79-129 (131)
99 PRK08190 bifunctional enoyl-Co 74.4 17 0.00037 37.0 8.9 57 262-339 85-141 (466)
100 cd00556 Thioesterase_II Thioes 72.6 31 0.00068 26.1 8.2 53 260-336 43-96 (99)
101 COG0764 FabA 3-hydroxymyristoy 72.2 50 0.0011 28.3 9.9 61 113-174 85-145 (147)
102 cd03444 Thioesterase_II_repeat 68.8 35 0.00076 27.0 7.9 56 114-170 47-102 (104)
103 TIGR00189 tesB acyl-CoA thioes 68.3 22 0.00048 32.9 7.6 54 116-171 45-98 (271)
104 cd03448 HDE_HSD HDE_HSD The R 67.2 35 0.00076 27.9 7.7 48 115-167 70-117 (122)
105 PF14539 DUF4442: Domain of un 66.9 30 0.00065 28.6 7.4 95 221-338 30-131 (132)
106 COG2030 MaoC Acyl dehydratase 66.6 35 0.00075 29.3 7.9 59 114-173 93-155 (159)
107 TIGR01750 fabZ beta-hydroxyacy 65.4 40 0.00086 27.8 7.9 49 265-337 90-138 (140)
108 PF01575 MaoC_dehydratas: MaoC 63.0 14 0.0003 29.9 4.6 31 114-144 75-105 (122)
109 cd03450 NodN NodN (nodulation 62.1 76 0.0016 26.9 9.1 29 115-143 85-113 (149)
110 PF03756 AfsA: A-factor biosyn 58.1 1E+02 0.0022 25.2 9.2 73 248-339 48-132 (132)
111 PF13622 4HBT_3: Thioesterase- 57.9 1.2E+02 0.0026 27.5 10.4 57 260-341 34-90 (255)
112 cd03448 HDE_HSD HDE_HSD The R 55.6 64 0.0014 26.3 7.3 25 261-285 71-95 (122)
113 PRK10526 acyl-CoA thioesterase 53.8 60 0.0013 30.7 7.8 55 115-171 55-109 (286)
114 COG4109 Predicted transcriptio 53.5 61 0.0013 31.9 7.7 62 226-287 337-402 (432)
115 COG3777 Uncharacterized conser 51.4 65 0.0014 30.0 7.2 148 111-287 76-250 (273)
116 PRK11563 bifunctional aldehyde 49.4 41 0.00089 35.9 6.5 49 121-170 617-671 (675)
117 COG2030 MaoC Acyl dehydratase 49.3 68 0.0015 27.4 6.8 59 262-339 96-154 (159)
118 PLN02864 enoyl-CoA hydratase 48.5 87 0.0019 30.1 8.1 52 115-171 253-304 (310)
119 TIGR02278 PaaN-DH phenylacetic 47.9 54 0.0012 35.0 7.1 50 120-170 604-659 (663)
120 PF01575 MaoC_dehydratas: MaoC 47.5 27 0.00058 28.3 3.8 28 260-287 76-103 (122)
121 PRK13693 (3R)-hydroxyacyl-ACP 46.5 1.7E+02 0.0038 24.4 9.1 51 118-169 81-138 (142)
122 cd00493 FabA_FabZ FabA/Z, beta 46.3 1.1E+02 0.0023 24.4 7.3 47 265-335 81-127 (131)
123 TIGR00189 tesB acyl-CoA thioes 45.5 1.3E+02 0.0028 27.7 8.6 55 116-171 215-269 (271)
124 COG0764 FabA 3-hydroxymyristoy 45.4 1.3E+02 0.0028 25.7 7.8 54 265-341 92-145 (147)
125 COG1946 TesB Acyl-CoA thioeste 45.0 2.9E+02 0.0062 26.4 10.7 103 61-173 179-283 (289)
126 PRK11563 bifunctional aldehyde 41.2 68 0.0015 34.3 6.7 54 266-336 617-670 (675)
127 cd03450 NodN NodN (nodulation 41.0 82 0.0018 26.7 6.0 23 265-287 90-112 (149)
128 TIGR02278 PaaN-DH phenylacetic 40.2 81 0.0018 33.7 7.0 55 265-336 604-658 (663)
129 PF11456 DUF3019: Protein of u 39.1 84 0.0018 25.1 5.3 35 150-184 65-99 (102)
130 PF09500 YiiD_Cterm: Putative 37.5 2.6E+02 0.0056 23.8 13.3 90 68-173 39-143 (144)
131 PF02551 Acyl_CoA_thio: Acyl-C 36.3 2.1E+02 0.0046 24.0 7.5 53 117-169 77-129 (131)
132 PF07977 FabA: FabA-like domai 36.3 1.3E+02 0.0027 24.8 6.3 24 264-287 88-112 (138)
133 KOG2763 Acyl-CoA thioesterase 32.5 2.2E+02 0.0047 28.1 7.9 208 72-286 23-269 (357)
134 PRK13188 bifunctional UDP-3-O- 30.2 2.3E+02 0.005 29.0 8.0 52 266-340 409-460 (464)
135 TIGR02447 yiiD_Cterm thioester 29.8 3.2E+02 0.007 22.6 7.8 59 223-285 25-93 (138)
136 PRK10526 acyl-CoA thioesterase 29.6 4.8E+02 0.01 24.5 11.9 59 113-172 224-282 (286)
137 PLN02868 acyl-CoA thioesterase 29.4 1.8E+02 0.0038 29.0 7.1 55 115-171 181-235 (413)
138 PRK05174 3-hydroxydecanoyl-(ac 28.1 4E+02 0.0087 23.2 13.4 119 37-172 31-164 (172)
139 cd01289 FabA_like Domain of un 24.1 3.6E+02 0.0077 22.3 7.0 22 266-287 85-107 (138)
140 cd03445 Thioesterase_II_repeat 23.8 3.4E+02 0.0074 20.8 9.8 53 235-287 14-66 (94)
No 1
>PLN02370 acyl-ACP thioesterase
Probab=100.00 E-value=2.2e-55 Score=429.88 Aligned_cols=284 Identities=57% Similarity=0.989 Sum_probs=241.4
Q ss_pred CCCCcccccccccccCCCeeEEEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEE
Q 019296 38 PDNSPLRACLLGRFVEDRFVYRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVV 117 (343)
Q Consensus 38 ~~~~~~~~~~~g~~~~~~~~f~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv 117 (343)
.+.-++|++++|++++|+++|+++|+||+||||++|+++.+.+++|||+++..|+..+|+..+||+...+|.+.|++|||
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~~~f~Ir~yEvD~~g~lsl~~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVL 199 (419)
T PLN02370 120 RSDMLIDPFGIGRIVQDGLVFRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVV 199 (419)
T ss_pred CCcccccccccCceeccCcEEEEEEEEeeEEECCCCCCCHHHHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEE
Confidence 45567999999999999999999999999999999999999999999999999999999866677655788999999999
Q ss_pred EeeEEEEeecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceeCCCHHHHHhhcccccc
Q 019296 118 TRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWVIMNRETRRLSKIPEQVRQEVLPFYLN 197 (343)
Q Consensus 118 ~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD~~trRp~riP~ev~e~l~~~~~~ 197 (343)
++++|+|.+||+|||+|+|+||+.+++++++.|+|.|+|.++|+++++|.|+||+||+++|||+|||+++++.+.+|..+
T Consensus 200 tr~~I~~~R~P~~gD~V~V~Twv~~~~k~~~~Rdf~I~D~~~Ge~la~A~SvWV~mD~~TRRpvRIP~Evr~~i~~y~~~ 279 (419)
T PLN02370 200 TRMQVLVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVRDCKTGETLTRASSVWVMMNKLTRRLSKIPEEVRGEIEPYFLN 279 (419)
T ss_pred EEEEEEeCcCCCCCCEEEEEEEEeeCCCCEEEEEEEEEECCCCeEEEEEEEEEEEEECCCCcccCCCHHHHHhhhhcccc
Confidence 99999999999999999999999999999999999999965799999999999999999999999999998887777543
Q ss_pred cc-cccccccccCCccCCCcccccccccccccccccCccccccchhhHHHHHHhhccHhHHhhCcceEEEEEEcccCCCC
Q 019296 198 TF-AIDKEKTDVGKIDKLTDQTAGRIRSGLAPRWSDMDANQHVNNVKYIGWILESVPIHVLEDYNMTSMTLEYRRECRQS 276 (343)
Q Consensus 198 ~~-~~~~~~~~~~ki~~l~~~~~~~~~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~~~~~~~~~i~Y~~e~~~g 276 (343)
.. .++ ...+|++++.+...+.....++|||+|||.||||||++|++|++|.+|.+++..+.+++++|+|++||++|
T Consensus 280 ~~~~i~---~~~~kl~~l~~~~~~~~~~~~~VRysDLD~NgHVNNvkYi~Wild~lP~e~l~~~~l~~i~I~Y~kE~~~g 356 (419)
T PLN02370 280 SDPVVN---EDSRKLPKLDDKTADYIRKGLTPRWSDLDVNQHVNNVKYIGWILESAPPPIMESHELAAITLEYRRECGRD 356 (419)
T ss_pred cccccc---cccccCCccccccccceeeeeeecHHHCcccCccccHHHHHHHHhhCchhhhhcceEEEEEEEEcccCCCC
Confidence 22 111 23566766654322233456999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEecC
Q 019296 277 NLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQSKD 341 (343)
Q Consensus 277 d~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~~~ 341 (343)
|.|.+.+..... +... ........+.|.++ ..||+++|+++|+|++|.
T Consensus 357 d~V~s~~~~~~~----~~~~------------~~~~~~~~~~h~~~-~~dG~e~a~a~t~Wr~~~ 404 (419)
T PLN02370 357 SVLQSLTAVSGT----GIGN------------LGTAGDVECQHLLR-LEDGAEIVRGRTEWRPKH 404 (419)
T ss_pred CEEEEEEeeccc----cccc------------ccCCCcceEEEEEE-cCCCeEEEEEEEEEEECC
Confidence 999998875431 1000 00012235777776 458999999999999984
No 2
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=100.00 E-value=6.2e-53 Score=394.39 Aligned_cols=260 Identities=34% Similarity=0.657 Sum_probs=186.8
Q ss_pred CeeEEEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEE
Q 019296 55 RFVYRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVV 134 (343)
Q Consensus 55 ~~~f~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V 134 (343)
+.+|+++++|+++|||.+|+++++.+++|||+++..|+..+|++.+.||..+.|.+.|++|||++++|++.++|++||+|
T Consensus 1 g~~y~~~~~v~~~e~d~~~~l~l~~l~~~~qe~a~~h~~~lG~~~~~~~~~~~l~~~~~~Wvl~r~~i~i~r~P~~~e~i 80 (261)
T PF01643_consen 1 GLVYEKEFTVRYYECDPNGRLKLSALLNYFQEAATEHAESLGFGMDYFGSTPELKKQGLAWVLSRYQIEIHRYPRWGEKI 80 (261)
T ss_dssp ---EEEEEE--GGGB-TTSBB-HHHHHHHHHHHHHHHHHHTT-SHHH------HHCTTEEEEEEEEEEEESS--BTT-EE
T ss_pred CceEEEEEEEcceeeCCCCCCCHHHHHHHHHHHHHHHHHHhCCCcccchhhhhHhhcCcEEEEEEEEEEEEecCCCCCEE
Confidence 46899999999999999999999999999999999999999988644333344899999999999999999999999999
Q ss_pred EEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceeCCCHHHHHhhccccccccccccc-ccccCCccC
Q 019296 135 EIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWVIMNRETRRLSKIPEQVRQEVLPFYLNTFAIDKE-KTDVGKIDK 213 (343)
Q Consensus 135 ~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD~~trRp~riP~ev~e~l~~~~~~~~~~~~~-~~~~~ki~~ 213 (343)
+|+||+.+.+++++.|+|.|++..+|+++++|+|.||+||+++|||+|+|+++.+.+.++.++. ++.+ ....+++++
T Consensus 81 ~i~Tw~~~~~~~~~~R~f~i~d~~~G~~l~~a~s~WvliD~~trr~~ri~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 158 (261)
T PF01643_consen 81 TIETWPSGFKRFFAYRDFEIYDAEDGELLARATSIWVLIDLETRRPVRIPEEIIEEYGPFFPDE--LPEEDIRKLPKIPK 158 (261)
T ss_dssp EEEEEEEEE-SSEEEEEEEEE--TTS-EEEEEEEEEEEEETTT-SEE---GGCTCCGGGGB------T-EESSS------
T ss_pred EEEEEeccCCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEhhhCCcccCCHHHHhhhhhhcccc--cccccccccccccc
Confidence 9999999999999999999999338999999999999999999999999998877664333332 1111 112333322
Q ss_pred CCcccccccccccccccccCccccccchhhHHHHHHhhccHhHHhhCcceEEEEEEcccCCCCCEEEEEEEeeccccccC
Q 019296 214 LTDQTAGRIRSGLAPRWSDMDANQHVNNVKYIGWILESVPIHVLEDYNMTSMTLEYRRECRQSNLLESLTSTTASVTEDS 293 (343)
Q Consensus 214 l~~~~~~~~~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~~~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~ 293 (343)
.+. .......+++|||+|||.||||||++|++|++|++|.++++.+.+++++|.|++|+.+||.|.+.+.+... + +
T Consensus 159 ~~~-~~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~~~~~~~~~~~i~I~y~~E~~~gd~i~~~~~~~~~--~-~ 234 (261)
T PF01643_consen 159 NPP-EEPEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPEEFLEKYQIKSIDINYKKEIRYGDTITSYTEVEKD--E-E 234 (261)
T ss_dssp -----TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-HHHHCCEEEEEEEEEE-S--BTT-EEEEEEEEEEE--C-C
T ss_pred cCC-hhhheeecccccHHHCCCCCCcCHHHHHHHHHHhCcchhhccCCcEEEEEEEccccCCCCEEEEEEEEccc--c-c
Confidence 222 12334568999999999999999999999999999999999999999999999999999999999886541 0 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEe
Q 019296 294 NNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQS 339 (343)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~ 339 (343)
.....+.|.|+.+ +|+++|+++|+|++
T Consensus 235 ------------------~~~~~~~h~i~~~-~g~~~~~~~~~W~~ 261 (261)
T PF01643_consen 235 ------------------EDGLSTLHEIRNE-DGEEVARARTEWQK 261 (261)
T ss_dssp ------------------TTEEEEEEEEECT--TCEEEEEEEEEE-
T ss_pred ------------------CCceEEEEEEEcC-CCceEEEEEEEEcC
Confidence 2346799999976 49999999999985
No 3
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=100.00 E-value=8e-35 Score=258.56 Aligned_cols=239 Identities=19% Similarity=0.260 Sum_probs=195.4
Q ss_pred eEEEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEE
Q 019296 57 VYRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEI 136 (343)
Q Consensus 57 ~f~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I 136 (343)
+++..+.|.+++.|+.|++..+..+++..+++..+...+|... ...+.+.++.|+|.++.|++.+||.++|.++|
T Consensus 3 ~~k~~~~vP~~~~d~~g~i~~~~~l~l~~~i~~~Qsi~lg~~~-----~~~lee~~l~WiV~~~~i~~ir~pef~e~iti 77 (250)
T COG3884 3 VDKQNMPVPFYWPDAVGDIDITSRLRLDLQIRGIQSIGLGQLD-----VAGLEEYHLLWIVRRTEIDVIRPPEFGEMITI 77 (250)
T ss_pred chhhcCCCccchhhhcCCcchhhhhhhhhhhcceeecccchhh-----hhhHhhcCceEEEEEEEEEEeeccccCCcceE
Confidence 3456778889999999999999999999999887766555221 14567889999999999999999999999999
Q ss_pred EEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceeCCCHHHHHhhcccccccccccccccccCCccCCCc
Q 019296 137 DTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWVIMNRETRRLSKIPEQVRQEVLPFYLNTFAIDKEKTDVGKIDKLTD 216 (343)
Q Consensus 137 ~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD~~trRp~riP~ev~e~l~~~~~~~~~~~~~~~~~~ki~~l~~ 216 (343)
+||+.++.++++.|.|.+.+ .|+.+..+.+.|++||.+||||.++++++.+.+..-...+.-.. ++.+.+ +.
T Consensus 78 ~t~~~s~~~ffcyrrf~~~~--~gg~Lie~~a~wilmn~dTrkp~ri~~d~la~~~~t~~~k~~r~-----~~~l~~-~~ 149 (250)
T COG3884 78 ETWCSSISNFFCYRRFRLDG--RGGGLIEIEAFWILMNRDTRKPARITDDLLAPFNLTTEKKRLRW-----PKYLSS-RL 149 (250)
T ss_pred EEeeccccceEEEEEEEEec--CCCcEEEEEEEEEEEccccccceeccHHHhhhhcccchhheecc-----ccccCc-cc
Confidence 99999999999999999998 58889999999999999999999999999876653222111111 111111 11
Q ss_pred ccccccccccccccccCccccccchhhHHHHHHhhccHhHHhhCcceEEEEEEcccCCCCCEEEEEEEeeccccccCCCC
Q 019296 217 QTAGRIRSGLAPRWSDMDANQHVNNVKYIGWILESVPIHVLEDYNMTSMTLEYRRECRQSNLLESLTSTTASVTEDSNNN 296 (343)
Q Consensus 217 ~~~~~~~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~~~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~ 296 (343)
+ ......+.||+.|||+||||||++|+.|+.|.++.+++..+++.++.+.|.+|+.+|++|++.+.+...
T Consensus 150 e--~s~~~~f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~~~~p~r~~l~y~keva~G~~iti~~e~~~~-------- 219 (250)
T COG3884 150 E--ASEIHDFPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKLYGPLRLTLEYVKEVAPGEKITIVYEVHPL-------- 219 (250)
T ss_pred c--ccccccceeEEEeeccccccccceehHHHHHHHhhhhHhhcccceeEEEEEcccCCCCeEEEEEEEccc--------
Confidence 1 112357999999999999999999999999999999999999999999999999999999999988763
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEe
Q 019296 297 NKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQS 339 (343)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~ 339 (343)
.+..+|.| ||.+.+-+-++|..
T Consensus 220 ---------------~s~~~f~~------d~~v~~lt~i~~d~ 241 (250)
T COG3884 220 ---------------ESKHQFTS------DGQVNALTYIVGDE 241 (250)
T ss_pred ---------------CceeeecC------CcceEEEEEEEehh
Confidence 11233443 78888888888865
No 4
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=99.96 E-value=7.8e-28 Score=201.58 Aligned_cols=128 Identities=8% Similarity=0.163 Sum_probs=120.0
Q ss_pred eEEEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEE
Q 019296 57 VYRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEI 136 (343)
Q Consensus 57 ~f~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I 136 (343)
+|..+++|||+|||++|||+|+.|++|||+|+.+++..+|++. ..+...|++|++++++|+|.+|+++||+|+|
T Consensus 2 ~f~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~------~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v 75 (130)
T PRK10800 2 LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQ------QALLAERVAFVVRKMTVEYYAPARLDDMLEV 75 (130)
T ss_pred ceEEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCH------HHHHhCCCEEEEEEEEEEEcCcccCCCEEEE
Confidence 5788999999999999999999999999999999999998763 4566789999999999999999999999999
Q ss_pred EEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceeCCCHHHHHhh
Q 019296 137 DTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWVIMNRETRRLSKIPEQVRQEV 191 (343)
Q Consensus 137 ~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD~~trRp~riP~ev~e~l 191 (343)
+||+.+++++++...|++++. +|+++++|.++||++|.+++||+++|+++++.+
T Consensus 76 ~t~v~~~~~~s~~~~~~i~~~-~g~~~a~~~~~~v~~d~~~~r~~~iP~~l~~~~ 129 (130)
T PRK10800 76 QSEITSMRGTSLTFTQRIVNA-EGTLLNEAEVLIVCVDPLKMKPRALPKSIVAEF 129 (130)
T ss_pred EEEEEeeCcEEEEEEEEEEcC-CCeEEEEEEEEEEEEECCCCcCcCCCHHHHHhh
Confidence 999999999999999999985 799999999999999999999999999998864
No 5
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=99.94 E-value=5.2e-26 Score=192.88 Aligned_cols=131 Identities=15% Similarity=0.293 Sum_probs=123.2
Q ss_pred CeeEEEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEE
Q 019296 55 RFVYRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVV 134 (343)
Q Consensus 55 ~~~f~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V 134 (343)
...|+.+++|||+|||++|||+|++|+.|||+|+.++++.+|++. ..+...|+.|++++++|+|++|.++||.+
T Consensus 3 ~~~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~------~~~~~~~~~~~v~~~~i~y~~p~~~~d~l 76 (137)
T COG0824 3 SFPFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDY------ADLEEGGIAFVVVEAEIDYLRPARLGDVL 76 (137)
T ss_pred CcceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCH------HHHhhCCcEEEEEEEEeEECCCccCCCEE
Confidence 467899999999999999999999999999999999999988773 56777789999999999999999999999
Q ss_pred EEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceeCCCHHHHHhhcc
Q 019296 135 EIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWVIMNRETRRLSKIPEQVRQEVLP 193 (343)
Q Consensus 135 ~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD~~trRp~riP~ev~e~l~~ 193 (343)
+|+||+.++++.++.+.|+|++. ++++++|.+++|++|.+++||+++|+++++.+..
T Consensus 77 ~v~~~v~~~~~~s~~~~~~i~~~--~~l~a~~~~~~V~v~~~~~kp~~~P~~~~~~l~~ 133 (137)
T COG0824 77 TVRTRVEELGGKSLTLGYEIVNE--DELLATGETTLVCVDLKTGKPVPLPPELREALEA 133 (137)
T ss_pred EEEEEEEeecCeEEEEEEEEEeC--CEEEEEEEEEEEEEECCCCCcccCCHHHHHHHHH
Confidence 99999999999999999999995 4999999999999999999999999999998764
No 6
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=99.94 E-value=6.6e-26 Score=188.10 Aligned_cols=124 Identities=11% Similarity=0.210 Sum_probs=115.6
Q ss_pred EEEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHh-hCCcEEEEEeeEEEEeecCCCCCEEEE
Q 019296 58 YRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMS-LRKLIWVVTRIHIQVQRYSSWGDVVEI 136 (343)
Q Consensus 58 f~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~-~~g~~wVv~r~~ie~~r~p~~gD~V~I 136 (343)
|+.+++|||+|||++|||+++.|++||++|+..++..+|++. ..+. +.|.+|++++.+|+|.+|+++||.|.|
T Consensus 1 f~~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~------~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v 74 (126)
T TIGR02799 1 FRWPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQ------SALLEETGLVFVVRSMELDYLKPARLDDLLTV 74 (126)
T ss_pred CcceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCH------HHHhhcCCcEEEEEEEEEEEcCcccCCCEEEE
Confidence 457899999999999999999999999999999999999863 3453 569999999999999999999999999
Q ss_pred EEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceeCCCHHHHH
Q 019296 137 DTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWVIMNRETRRLSKIPEQVRQ 189 (343)
Q Consensus 137 ~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD~~trRp~riP~ev~e 189 (343)
+||+.++++.++.+.|.++. +|+++++|.++||++|.+++||+++|+++++
T Consensus 75 ~~~v~~~~~~~~~~~~~i~~--~g~~~a~~~~~~v~vd~~~~~~~~~p~~~~~ 125 (126)
T TIGR02799 75 TTRVVELKGASLVFAQEVRR--GDTLLCEATVEVACVDASDMRPRRLPAELRA 125 (126)
T ss_pred EEEEEecCceEEEEEEEEEe--CCEEEEEEEEEEEEEECCCCcCcCCCHHHhh
Confidence 99999999999999999995 6899999999999999999999999999876
No 7
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=99.93 E-value=8.4e-25 Score=178.47 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=108.7
Q ss_pred EEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEEEEE
Q 019296 61 TFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEIDTWV 140 (343)
Q Consensus 61 ~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~T~v 140 (343)
+++|+|+|||++|||+++.|++|||+|+..++..+|++. ..+.+.|++|++++++++|++|+++||.|+|+||+
T Consensus 1 ~~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~------~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~ 74 (117)
T TIGR00051 1 PVRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQ------SVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQI 74 (117)
T ss_pred CEEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCH------HHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEE
Confidence 368999999999999999999999999999999988763 46777899999999999999999999999999999
Q ss_pred eecCCceEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceeCCC
Q 019296 141 DASGKNAMRRDWIIRDYRTQDIITRATSTWVIMNRETRRLSKIP 184 (343)
Q Consensus 141 ~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD~~trRp~riP 184 (343)
.+++++++.+.|+|++. +|++++.+.++||++|++++||+++|
T Consensus 75 ~~~~~~s~~~~~~i~~~-~~~~~~~~~~~~v~~d~~~~r~~~ip 117 (117)
T TIGR00051 75 EELNGFSFVFSQEIFNE-DEALLKAATVIVVCVDPKKQKPVAIP 117 (117)
T ss_pred EecCcEEEEEEEEEEeC-CCcEEEeeEEEEEEEECCCCeEcCCC
Confidence 99999999999999985 67888888888999999999999997
No 8
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=99.89 E-value=6.1e-22 Score=163.21 Aligned_cols=119 Identities=19% Similarity=0.274 Sum_probs=100.9
Q ss_pred eeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEEEEEeec
Q 019296 64 IRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEIDTWVDAS 143 (343)
Q Consensus 64 Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~T~v~~~ 143 (343)
|||+||| +|||+|+.|++||++|+.+++...|+ . ..+...|+++++++.+|+|++|++++|.++|++++.++
T Consensus 1 Vr~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~-~------~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~ 72 (121)
T PF13279_consen 1 VRWSDTD-NGHVNNARYLRYFEEAREEFLEELGL-Y------DELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEI 72 (121)
T ss_dssp --GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTS-C------HHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEE
T ss_pred CCHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcch-h------hHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEE
Confidence 7999999 99999999999999999999999887 3 56788899999999999999999999999999999999
Q ss_pred CCceEEEEEEEEECCCCcE--EEEEEEEEEEEeCCCCceeCCCHHHHHhh
Q 019296 144 GKNAMRRDWIIRDYRTQDI--ITRATSTWVIMNRETRRLSKIPEQVRQEV 191 (343)
Q Consensus 144 ~~~~~~r~f~I~d~~~Ge~--ia~a~s~wV~vD~~trRp~riP~ev~e~l 191 (343)
++.++...|.|++.++|+. +|+|.+++|++|.++ |++++|++++++|
T Consensus 73 ~~~s~~~~~~i~~~~~g~~~~~a~~~~~~v~~d~~~-r~~~~P~~~~~~l 121 (121)
T PF13279_consen 73 GGKSFRFEQEIFRPADGKGELAATGRTVMVFVDYKT-RSVPIPDELREAL 121 (121)
T ss_dssp ESSEEEEEEEEEECSTTEEEEEEEEEEEEEEEETTT-CE-B--HHHHHHH
T ss_pred CCcEEEEEEEEEEcCCCceEEEEEEEEEEEEEeCCC-CcCCCCHHHHhcC
Confidence 9999999999998545655 999999999999998 7999999999864
No 9
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.88 E-value=1.2e-21 Score=198.76 Aligned_cols=136 Identities=10% Similarity=0.080 Sum_probs=123.7
Q ss_pred cCCCeeEEEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCC
Q 019296 52 VEDRFVYRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWG 131 (343)
Q Consensus 52 ~~~~~~f~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~g 131 (343)
..+..+++.+++|++++||++|||+|+.|++||++|+.+++..+|++. .....+++|++++.+|+|.+|+++|
T Consensus 340 ~~~~~~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~-------~~~~~~~~~vvv~~~i~y~rp~~~g 412 (495)
T PRK07531 340 DLSQPLRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDA-------AYVAAGHSYYTVETHIRHLGEAKAG 412 (495)
T ss_pred cCCCceEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCH-------HHHhcCCcEEEEEEEEEEcccCCCC
Confidence 344566688999999999999999999999999999999999998763 3344589999999999999999999
Q ss_pred CEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceeCCCHHHHHhhcccc
Q 019296 132 DVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWVIMNRETRRLSKIPEQVRQEVLPFY 195 (343)
Q Consensus 132 D~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD~~trRp~riP~ev~e~l~~~~ 195 (343)
|.|+|+||+.+++++++.+.|+|++. +|++++++.++||++|+++|||+++|+++++.+..+.
T Consensus 413 D~v~I~t~v~~~~~~s~~~~~~i~~~-~g~l~A~g~~~~v~vD~~trr~~~iP~e~r~~l~~~~ 475 (495)
T PRK07531 413 QALHVETQLLSGDEKRLHLFHTLYDA-GGELIATAEHMLLHVDLKAGKAVPAPAAVLAALKPIA 475 (495)
T ss_pred CEEEEEEEEEecCCcEEEEEEEEECC-CCcEEEEEEEEEEEEECCCCccCCCCHHHHHHHHHHH
Confidence 99999999999999999999999984 8999999999999999999999999999999886543
No 10
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.75 E-value=3.6e-17 Score=129.86 Aligned_cols=110 Identities=16% Similarity=0.211 Sum_probs=102.2
Q ss_pred EEEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEE
Q 019296 58 YRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEID 137 (343)
Q Consensus 58 f~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~ 137 (343)
|.+++.|+++|||++||++++.|++|+++++..++...|.+. ..+...+..|++.+.+++|.+|+.+||+|.|+
T Consensus 1 ~~~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~ 74 (110)
T cd00586 1 FTLEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGY------DELEEQGLGLVVVELEIDYLRPLRLGDRLTVE 74 (110)
T ss_pred CcEEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCH------HHHHhCCceEEEEEeEeeEcCccCCCCEEEEE
Confidence 457899999999999999999999999999999999998763 34567899999999999999999999999999
Q ss_pred EEEeecCCceEEEEEEEEECCCCcEEEEEEEEEEEEe
Q 019296 138 TWVDASGKNAMRRDWIIRDYRTQDIITRATSTWVIMN 174 (343)
Q Consensus 138 T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD 174 (343)
+|+.+.++.++.+.+.+++. +|++++++.+.|+++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~-~g~~~a~~~~~~~~~d 110 (110)
T cd00586 75 TRVLRLGRKSFTFEQEIFRE-DGELLATAETVLVCVD 110 (110)
T ss_pred EEEEecCcEEEEEEEEEECC-CCeEEEEEEEEEEEeC
Confidence 99999999999999999985 7999999999999987
No 11
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=99.73 E-value=1.9e-17 Score=140.42 Aligned_cols=95 Identities=20% Similarity=0.290 Sum_probs=84.2
Q ss_pred cccccccccccCccccccchhhHHHHHHhhccHhHHhhC--------------cceEEEEEEcccCCCCCEEEEEEEeec
Q 019296 222 IRSGLAPRWSDMDANQHVNNVKYIGWILESVPIHVLEDY--------------NMTSMTLEYRRECRQSNLLESLTSTTA 287 (343)
Q Consensus 222 ~~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~~~--------------~~~~~~i~Y~~e~~~gd~i~v~t~~~~ 287 (343)
...+++|||+|+|.+|||||++|+.|| |.++.++++.. .+.+.+|+|++|+++||.++|.+++..
T Consensus 6 ~~~~~~V~~~d~D~~GhV~~a~Yl~~f-E~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~v~~~v~~ 84 (137)
T COG0824 6 FSTPIRVRYEDTDAMGHVNNANYLVFF-EEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDVLTVRTRVEE 84 (137)
T ss_pred eEEEEEEEhhhcCcccEEecchHHHHH-HHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCEEEEEEEEEe
Confidence 346789999999999999999999999 78899988652 478999999999999999999999998
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEecC
Q 019296 288 SVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQSKD 341 (343)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~~~ 341 (343)
+ + +.++.|.|+|.++ + .++++|+++++|.+
T Consensus 85 ~----~------------------~~s~~~~~~i~~~-~-~l~a~~~~~~V~v~ 114 (137)
T COG0824 85 L----G------------------GKSLTLGYEIVNE-D-ELLATGETTLVCVD 114 (137)
T ss_pred e----c------------------CeEEEEEEEEEeC-C-EEEEEEEEEEEEEE
Confidence 4 3 5689999999875 3 99999999999976
No 12
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=99.69 E-value=1.4e-16 Score=133.20 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=80.1
Q ss_pred cccccccccCccccccchhhHHHHHHhhccHhHHhhC--------------cceEEEEEEcccCCCCCEEEEEEEeeccc
Q 019296 224 SGLAPRWSDMDANQHVNNVKYIGWILESVPIHVLEDY--------------NMTSMTLEYRRECRQSNLLESLTSTTASV 289 (343)
Q Consensus 224 ~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~~~--------------~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~ 289 (343)
.+++|||+|+|.+|||||++|++|+ |.++.+++... .+.+.+|+|++|+++||.|.+.+++..+
T Consensus 5 ~~~~Vr~~d~D~~Ghv~~~~y~~~~-e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~- 82 (130)
T PRK10800 5 WPVRVYYEDTDAGGVVYHASYVAFY-ERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDMLEVQSEITSM- 82 (130)
T ss_pred EEEEEeehhcCCCCeEehHHHHHHH-HHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCEEEEEEEEEee-
Confidence 4688999999999999999999999 45566654432 3689999999999999999999999984
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEecC
Q 019296 290 TEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQSKD 341 (343)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~~~ 341 (343)
+ +.++.|.|.+++. +|+++++|+++|++.+
T Consensus 83 ---~------------------~~s~~~~~~i~~~-~g~~~a~~~~~~v~~d 112 (130)
T PRK10800 83 ---R------------------GTSLTFTQRIVNA-EGTLLNEAEVLIVCVD 112 (130)
T ss_pred ---C------------------cEEEEEEEEEEcC-CCeEEEEEEEEEEEEE
Confidence 2 4578899998864 7999999999999865
No 13
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=99.62 E-value=3.4e-15 Score=122.84 Aligned_cols=91 Identities=26% Similarity=0.391 Sum_probs=70.9
Q ss_pred cccccCccccccchhhHHHHHHhhccHhHHhh-------------CcceEEEEEEcccCCCCCEEEEEEEeeccccccCC
Q 019296 228 PRWSDMDANQHVNNVKYIGWILESVPIHVLED-------------YNMTSMTLEYRRECRQSNLLESLTSTTASVTEDSN 294 (343)
Q Consensus 228 vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~~-------------~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~ 294 (343)
|||+|+| +|||||++|+.|+ |.++.+++.. ..+.+.+|+|++|+++||.+.+.+++..+ +
T Consensus 1 Vr~~D~D-~ghv~n~~Y~~~~-e~ar~~~~~~~g~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~----~- 73 (121)
T PF13279_consen 1 VRWSDTD-NGHVNNARYLRYF-EEAREEFLEELGLYDELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEI----G- 73 (121)
T ss_dssp --GGGB--TSSB-HHHHHHHH-HHHHHHHHHHHTSCHHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEE----E-
T ss_pred CCHHHcc-CCeEcHHHHHHHH-HHHHHHHHHhcchhhHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEE----C-
Confidence 7899999 9999999999999 6689988853 24788999999999999999999999874 3
Q ss_pred CCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcE--EEEEEEEEEecCC
Q 019296 295 NNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAE--IIRARSEWQSKDE 342 (343)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~--i~~~~t~W~~~~~ 342 (343)
+.++.+.|.+.+.++|+. +|+|++++++.+.
T Consensus 74 -----------------~~s~~~~~~i~~~~~g~~~~~a~~~~~~v~~d~ 106 (121)
T PF13279_consen 74 -----------------GKSFRFEQEIFRPADGKGELAATGRTVMVFVDY 106 (121)
T ss_dssp -----------------SSEEEEEEEEEECSTTEEEEEEEEEEEEEEEET
T ss_pred -----------------CcEEEEEEEEEEcCCCceEEEEEEEEEEEEEeC
Confidence 567899999987445655 9999999998653
No 14
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=99.61 E-value=2.9e-15 Score=123.99 Aligned_cols=93 Identities=23% Similarity=0.292 Sum_probs=78.1
Q ss_pred cccccccccCccccccchhhHHHHHHhhccHhHHhhC---------------cceEEEEEEcccCCCCCEEEEEEEeecc
Q 019296 224 SGLAPRWSDMDANQHVNNVKYIGWILESVPIHVLEDY---------------NMTSMTLEYRRECRQSNLLESLTSTTAS 288 (343)
Q Consensus 224 ~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~~~---------------~~~~~~i~Y~~e~~~gd~i~v~t~~~~~ 288 (343)
.+++|||+|+|.+|||||++|+.|| +.++.+++... .+.+++|+|++|+++||.|.+.+++..+
T Consensus 3 ~~~~vr~~d~D~~Ghv~~~~y~~~~-~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v~~~v~~~ 81 (126)
T TIGR02799 3 WPIRVYYEDTDAGGVVYHANYLKFM-ERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDLLTVTTRVVEL 81 (126)
T ss_pred ceEEEEEeccCCCceEEechHHHHH-HHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCEEEEEEEEEec
Confidence 3578999999999999999999999 55566655432 3678999999999999999999999884
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEecC
Q 019296 289 VTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQSKD 341 (343)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~~~ 341 (343)
+ ..++.+.+.+.. +|.++|+|.++|++.+
T Consensus 82 ----~------------------~~~~~~~~~i~~--~g~~~a~~~~~~v~vd 110 (126)
T TIGR02799 82 ----K------------------GASLVFAQEVRR--GDTLLCEATVEVACVD 110 (126)
T ss_pred ----C------------------ceEEEEEEEEEe--CCEEEEEEEEEEEEEE
Confidence 2 467888888883 6889999999999865
No 15
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=99.60 E-value=6.6e-15 Score=119.81 Aligned_cols=92 Identities=17% Similarity=0.271 Sum_probs=74.4
Q ss_pred cccccccCccccccchhhHHHHHHhhccHhHHhh--------------CcceEEEEEEcccCCCCCEEEEEEEeeccccc
Q 019296 226 LAPRWSDMDANQHVNNVKYIGWILESVPIHVLED--------------YNMTSMTLEYRRECRQSNLLESLTSTTASVTE 291 (343)
Q Consensus 226 ~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~~--------------~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~ 291 (343)
++|||+|+|.+|||||++|+.|++++ +.+++.. +.+.+++|+|++|+++||.|.+.+++..+
T Consensus 2 ~~V~~~d~D~~G~v~~~~y~~~~~~a-~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~~~~--- 77 (117)
T TIGR00051 2 VRVYYEDTDAQGIVYHANYLRYCERA-RTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQIEEL--- 77 (117)
T ss_pred EEEEEeccCCCcEEEehHHHHHHHHH-HHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEEEec---
Confidence 67999999999999999999999555 4444332 24789999999999999999999999884
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEecC
Q 019296 292 DSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQSKD 341 (343)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~~~ 341 (343)
+ +.++.+.|.+.+. ++..++.+.+.|++.+
T Consensus 78 -~------------------~~s~~~~~~i~~~-~~~~~~~~~~~~v~~d 107 (117)
T TIGR00051 78 -N------------------GFSFVFSQEIFNE-DEALLKAATVIVVCVD 107 (117)
T ss_pred -C------------------cEEEEEEEEEEeC-CCcEEEeeEEEEEEEE
Confidence 2 4578889998864 6677777777787754
No 16
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.44 E-value=6.4e-12 Score=102.91 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=95.3
Q ss_pred CeeEEEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEee-EEEEeecCCCCCE
Q 019296 55 RFVYRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRI-HIQVQRYSSWGDV 133 (343)
Q Consensus 55 ~~~f~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~-~ie~~r~p~~gD~ 133 (343)
.-.+...++|++.+||+.|+++.+.|+.++++++..++.... +..+++... +++|.+|..+||.
T Consensus 5 ~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~---------------~~~~~~~~~~~~~f~~p~~~gd~ 69 (123)
T cd03442 5 DTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHA---------------GGRVVTASVDRIDFLKPVRVGDV 69 (123)
T ss_pred ccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHh---------------CCcEEEEEECceEEcCccccCcE
Confidence 345678999999999999999999999999999877653321 112334444 7999999999999
Q ss_pred EEEEEEEeecCCceEEEEEEEEECC----CCcEEEEEEEEEEEEeCCCCceeCCC
Q 019296 134 VEIDTWVDASGKNAMRRDWIIRDYR----TQDIITRATSTWVIMNRETRRLSKIP 184 (343)
Q Consensus 134 V~I~T~v~~~~~~~~~r~f~I~d~~----~Ge~ia~a~s~wV~vD~~trRp~riP 184 (343)
|.+++++.+.++.++..++.+++.+ +++++++|..++|++| .++||.++|
T Consensus 70 l~i~~~v~~~g~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~-~~~~~~~~p 123 (123)
T cd03442 70 VELSARVVYTGRTSMEVGVEVEAEDPLTGERRLVTSAYFTFVALD-EDGKPRPVP 123 (123)
T ss_pred EEEEEEEEEecCCeEEEEEEEEEecCCCCcEEEEEEEEEEEEEEC-CCCCeeeCC
Confidence 9999999999999999999999853 2479999999999999 468999887
No 17
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.36 E-value=2.4e-12 Score=130.88 Aligned_cols=95 Identities=16% Similarity=0.063 Sum_probs=81.5
Q ss_pred ccccccccccCccccccchhhHHHHHHhhccHhHHhhC-------------cceEEEEEEcccCCCCCEEEEEEEeeccc
Q 019296 223 RSGLAPRWSDMDANQHVNNVKYIGWILESVPIHVLEDY-------------NMTSMTLEYRRECRQSNLLESLTSTTASV 289 (343)
Q Consensus 223 ~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~~~-------------~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~ 289 (343)
..+++|++.|+|.+|||||++|+.|| |.++.+++... .+.+++|+|++|+++||.|+|.|++..+
T Consensus 347 ~~~~~V~~~~~D~~Ghvnn~~Yl~~~-e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~~i~y~rp~~~gD~v~I~t~v~~~- 424 (495)
T PRK07531 347 LVETKVPPAWVDYNGHMTEHRYLQVF-GDTTDALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQALHVETQLLSG- 424 (495)
T ss_pred EEeEEECHHHcCCCCeEcHHHHHHHH-HHHHHHHHHHcCCCHHHHhcCCcEEEEEEEEEEcccCCCCCEEEEEEEEEec-
Confidence 45789999999999999999999999 55666665432 4689999999999999999999999884
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEecC
Q 019296 290 TEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQSKD 341 (343)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~~~ 341 (343)
+ +.++.+.|.++. .+|+++++|+++|++.+
T Consensus 425 ---~------------------~~s~~~~~~i~~-~~g~l~A~g~~~~v~vD 454 (495)
T PRK07531 425 ---D------------------EKRLHLFHTLYD-AGGELIATAEHMLLHVD 454 (495)
T ss_pred ---C------------------CcEEEEEEEEEC-CCCcEEEEEEEEEEEEE
Confidence 2 467889999986 48999999999999865
No 18
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.34 E-value=6.6e-12 Score=99.37 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=75.0
Q ss_pred cccccccccCccccccchhhHHHHHHhhccHhHHh-------------hCcceEEEEEEcccCCCCCEEEEEEEeecccc
Q 019296 224 SGLAPRWSDMDANQHVNNVKYIGWILESVPIHVLE-------------DYNMTSMTLEYRRECRQSNLLESLTSTTASVT 290 (343)
Q Consensus 224 ~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~-------------~~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~ 290 (343)
..+.|+++|+|.+||+||..|++|+++++...+.. .+.+.+.+++|++|+++||.|.+.+++...
T Consensus 3 ~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~-- 80 (110)
T cd00586 3 LEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRL-- 80 (110)
T ss_pred EEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEec--
Confidence 35789999999999999999999997665432221 134688999999999999999999999873
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEecC
Q 019296 291 EDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQSKD 341 (343)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~~~ 341 (343)
+ +....+.+.+... +|+++|++.+.|...+
T Consensus 81 --~------------------~~~~~~~~~~~~~-~g~~~a~~~~~~~~~d 110 (110)
T cd00586 81 --G------------------RKSFTFEQEIFRE-DGELLATAETVLVCVD 110 (110)
T ss_pred --C------------------cEEEEEEEEEECC-CCeEEEEEEEEEEEeC
Confidence 1 3345566666654 7999999999998753
No 19
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=99.01 E-value=1.5e-08 Score=75.59 Aligned_cols=98 Identities=18% Similarity=0.207 Sum_probs=87.7
Q ss_pred EEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEEE
Q 019296 59 RQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEIDT 138 (343)
Q Consensus 59 ~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~T 138 (343)
...++|+++++|.+++++...++.+++.++..++...+. .+..+++.+.+++|.+|+..||.|.+++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~g~~v~~~~ 68 (100)
T cd03440 2 VLRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGG-------------RGLGAVTLSLDVRFLRPVRPGDTLTVEA 68 (100)
T ss_pred EEEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhcc-------------CCCeEEEEEEEeEEecCCCCCCEEEEEE
Confidence 347899999999999999999999999999998876431 4678999999999999999999999999
Q ss_pred EEeecCCceEEEEEEEEECCCCcEEEEEEEEE
Q 019296 139 WVDASGKNAMRRDWIIRDYRTQDIITRATSTW 170 (343)
Q Consensus 139 ~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~w 170 (343)
++.+.++.++.....+.+. +|++++.+...+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 99 (100)
T cd03440 69 EVVRVGRSSVTVEVEVRNE-DGKLVATATATF 99 (100)
T ss_pred EEEeccccEEEEEEEEECC-CCCEEEEEEEEe
Confidence 9999999999999999985 799999997765
No 20
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=98.94 E-value=1.6e-08 Score=76.07 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=70.7
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEE
Q 019296 72 DKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRD 151 (343)
Q Consensus 72 ~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~ 151 (343)
+|+|+.+.|+.|+++|+..++...+.+ +...++.+.+++|.+|.+.||.|++++|+.+.++.++...
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~-------------~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~ 67 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGD-------------GRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVE 67 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSS-------------TEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccC-------------CcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEE
Confidence 699999999999999999998876531 5789999999999999999999999999999999999999
Q ss_pred EEEEECCCCcEEE
Q 019296 152 WIIRDYRTQDIIT 164 (343)
Q Consensus 152 f~I~d~~~Ge~ia 164 (343)
+++++. +++++|
T Consensus 68 ~~v~~~-~~~~~~ 79 (79)
T PF03061_consen 68 VEVYSE-DGRLCA 79 (79)
T ss_dssp EEEEET-TSCEEE
T ss_pred EEEEEC-CCcEEC
Confidence 999996 677765
No 21
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=98.77 E-value=6.9e-08 Score=78.82 Aligned_cols=96 Identities=9% Similarity=0.106 Sum_probs=74.3
Q ss_pred ccccccccccCccccccchhhHHHHHHhhccHhHHhh-----CcceEE-EEEEcccCCCCCEEEEEEEeeccccccCCCC
Q 019296 223 RSGLAPRWSDMDANQHVNNVKYIGWILESVPIHVLED-----YNMTSM-TLEYRRECRQSNLLESLTSTTASVTEDSNNN 296 (343)
Q Consensus 223 ~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~~-----~~~~~~-~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~ 296 (343)
...+.|++.++|..||||+..|+.|+.+ +...+... .....+ +++|++|+.+||.|.+.+++... +
T Consensus 9 ~~~~~v~~~~~d~~g~v~~g~~~~~~d~-a~~~~~~~~~~~~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~----g--- 80 (123)
T cd03442 9 STRELVLPEDTNHHGTIFGGWLLEWMDE-LAGIAAYRHAGGRVVTASVDRIDFLKPVRVGDVVELSARVVYT----G--- 80 (123)
T ss_pred EEEEEeCCcccCcCCcEeHHHHHHHHHH-HHHHHHHHHhCCcEEEEEECceEEcCccccCcEEEEEEEEEEe----c---
Confidence 4578999999999999999999999954 44433221 234456 79999999999999999999873 3
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEEEEEecC----CCcEEEEEEEEEEecC
Q 019296 297 NKNKNSHNHNSSNNRKADLEYTHLLRMQA----DKAEIIRARSEWQSKD 341 (343)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~h~l~~~~----dg~~i~~~~t~W~~~~ 341 (343)
+.++.+...++..+ +++++++|.+++++.+
T Consensus 81 ---------------~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~ 114 (123)
T cd03442 81 ---------------RTSMEVGVEVEAEDPLTGERRLVTSAYFTFVALD 114 (123)
T ss_pred ---------------CCeEEEEEEEEEecCCCCcEEEEEEEEEEEEEEC
Confidence 44667777777653 3578999999999864
No 22
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=98.74 E-value=4.5e-07 Score=72.92 Aligned_cols=100 Identities=11% Similarity=0.070 Sum_probs=87.7
Q ss_pred eEEEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEE
Q 019296 57 VYRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEI 136 (343)
Q Consensus 57 ~f~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I 136 (343)
.....+++.+.++|..|.++...++.+++.++...+.... ..+...++.+++++|.+|+.. +.|.+
T Consensus 13 ~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~-------------~~~~~~~~~~~~i~f~~p~~~-~~v~~ 78 (113)
T cd03443 13 RVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSAL-------------PPGALAVTVDLNVNYLRPARG-GDLTA 78 (113)
T ss_pred eEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhcc-------------CCCCceEEEEEEEeEEcCCCC-CeEEE
Confidence 4567899999999999999999999999999987765432 124567889999999999999 99999
Q ss_pred EEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEE
Q 019296 137 DTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWV 171 (343)
Q Consensus 137 ~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV 171 (343)
++++.+.++..+..+..+++. +|+++++|..+|+
T Consensus 79 ~~~v~~~g~~~~~~~~~~~~~-~~~~~a~a~~~~~ 112 (113)
T cd03443 79 RARVVKLGRRLAVVEVEVTDE-DGKLVATARGTFA 112 (113)
T ss_pred EEEEEecCceEEEEEEEEECC-CCCEEEEEEEEEe
Confidence 999999999999999999985 6999999999886
No 23
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=98.69 E-value=1e-07 Score=89.29 Aligned_cols=97 Identities=14% Similarity=0.275 Sum_probs=70.7
Q ss_pred CCeeEEEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCE
Q 019296 54 DRFVYRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDV 133 (343)
Q Consensus 54 ~~~~f~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~ 133 (343)
....+...++||++|+|.+|||||..|++|+.++--..+. + ...+.+..|.|.+...+||.
T Consensus 162 ~~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~~~~----------------~---~~~~~~i~I~y~~E~~~gd~ 222 (261)
T PF01643_consen 162 EEPEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPEEFL----------------E---KYQIKSIDINYKKEIRYGDT 222 (261)
T ss_dssp -TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-HHHH----------------C---CEEEEEEEEEE-S--BTT-E
T ss_pred hhhheeecccccHHHCCCCCCcCHHHHHHHHHHhCcchhh----------------c---cCCcEEEEEEEccccCCCCE
Confidence 3556788999999999999999999999999987443221 1 24588999999999999999
Q ss_pred EEEEEEEeec-CCceEEEEEEEEECCCCcEEEEEEEEE
Q 019296 134 VEIDTWVDAS-GKNAMRRDWIIRDYRTQDIITRATSTW 170 (343)
Q Consensus 134 V~I~T~v~~~-~~~~~~r~f~I~d~~~Ge~ia~a~s~w 170 (343)
|.+.+.+... ........+.|.+. +|+.++++.+.|
T Consensus 223 i~~~~~~~~~~~~~~~~~~h~i~~~-~g~~~~~~~~~W 259 (261)
T PF01643_consen 223 ITSYTEVEKDEEEDGLSTLHEIRNE-DGEEVARARTEW 259 (261)
T ss_dssp EEEEEEEEEECCTTEEEEEEEEECT--TCEEEEEEEEE
T ss_pred EEEEEEEcccccCCceEEEEEEEcC-CCceEEEEEEEE
Confidence 9999987643 34455677889885 599999999999
No 24
>PRK10694 acyl-CoA esterase; Provisional
Probab=98.65 E-value=1.4e-06 Score=73.58 Aligned_cols=111 Identities=14% Similarity=0.030 Sum_probs=90.0
Q ss_pred EEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEee-EEEEeecCCCCCEEEEE
Q 019296 59 RQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRI-HIQVQRYSSWGDVVEID 137 (343)
Q Consensus 59 ~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~-~ie~~r~p~~gD~V~I~ 137 (343)
...+.|.+.+++..|.++-..++.|+.+++.-.+... .+-.++.+.. .++|.+|.+.||.|.++
T Consensus 13 ~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~---------------~~~~~vtv~vd~i~F~~Pv~~Gd~l~~~ 77 (133)
T PRK10694 13 VLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEI---------------AHGRVVTVRVEGMTFLRPVAVGDVVCCY 77 (133)
T ss_pred EEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHH---------------cCCceEEEEECceEECCCcccCcEEEEE
Confidence 3467899999999999999999999999877665432 1224677777 67999999999999999
Q ss_pred EEEeecCCceEEEEEEEEECC-----CC--cEEEEEEEEEEEEeCCCCceeCCCH
Q 019296 138 TWVDASGKNAMRRDWIIRDYR-----TQ--DIITRATSTWVIMNRETRRLSKIPE 185 (343)
Q Consensus 138 T~v~~~~~~~~~r~f~I~d~~-----~G--e~ia~a~s~wV~vD~~trRp~riP~ 185 (343)
+++...++.++....+++... .| ..++.+..++|.+| +.+||.++|+
T Consensus 78 a~V~~~g~sS~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd-~~g~p~~vp~ 131 (133)
T PRK10694 78 ARCVKTGTTSISINIEVWVKKVASEPIGQRYKATEALFTYVAVD-PEGKPRALPV 131 (133)
T ss_pred EEEEEccCceEEEEEEEEEeecccCCCCcEEEEEEEEEEEEEEC-CCCCEEeCCC
Confidence 999999999999888887421 12 34678888999998 5789999885
No 25
>PLN02370 acyl-ACP thioesterase
Probab=98.63 E-value=2e-07 Score=92.41 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=81.5
Q ss_pred cccccccccccCccccccchhhHHHHHHhhccHhH---------------Hh----hCcceEEEEEEcccCCCCCEEEEE
Q 019296 222 IRSGLAPRWSDMDANQHVNNVKYIGWILESVPIHV---------------LE----DYNMTSMTLEYRRECRQSNLLESL 282 (343)
Q Consensus 222 ~~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~---------------l~----~~~~~~~~i~Y~~e~~~gd~i~v~ 282 (343)
++.++.|||+|+|.+|++.=...+.||+|++-.+. +. .+.|.+++|+|.++.++||.|+|.
T Consensus 140 y~~~f~Ir~yEvD~~g~lsl~~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~~I~~~R~P~~gD~V~V~ 219 (419)
T PLN02370 140 FRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRMQVLVDRYPTWGDVVQVD 219 (419)
T ss_pred EEEEEEEeeEEECCCCCCCHHHHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEEEEEEEeCcCCCCCCEEEEE
Confidence 45679999999999999999999999999876553 11 256899999999999999999999
Q ss_pred EEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEecC
Q 019296 283 TSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQSKD 341 (343)
Q Consensus 283 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~~~ 341 (343)
||+... + +..+.+.+.|+..++|+++++|.++|++.+
T Consensus 220 Twv~~~----~------------------k~~~~Rdf~I~D~~~Ge~la~A~SvWV~mD 256 (419)
T PLN02370 220 TWVSAS----G------------------KNGMRRDWLVRDCKTGETLTRASSVWVMMN 256 (419)
T ss_pred EEEeeC----C------------------CCEEEEEEEEEECCCCeEEEEEEEEEEEEE
Confidence 999873 2 344556677776557999999999999864
No 26
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=98.57 E-value=3.9e-07 Score=68.42 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=56.6
Q ss_pred ccccchhhHHHHHHhhccHhHHhh-------CcceEEEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCC
Q 019296 236 NQHVNNVKYIGWILESVPIHVLED-------YNMTSMTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSS 308 (343)
Q Consensus 236 ngHVNN~~Y~~w~~e~~~~~~l~~-------~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (343)
+|||||..|+.|+ |.+...++.. ..+.+++|+|++|++.||.|++.+++... +
T Consensus 1 ~G~v~~g~~~~~~-d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~----g--------------- 60 (79)
T PF03061_consen 1 NGIVHGGVYLSLF-DEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRV----G--------------- 60 (79)
T ss_dssp TSSBCHHHHHHHH-HHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEE----E---------------
T ss_pred CCEEhHHHHHHHH-HHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEEEEE----C---------------
Confidence 6999999999999 5555555433 34688999999999999999999999984 3
Q ss_pred CCCCCCcEEEEEEEecCCCcEEE
Q 019296 309 NNRKADLEYTHLLRMQADKAEII 331 (343)
Q Consensus 309 ~~~~~~~~~~h~l~~~~dg~~i~ 331 (343)
+.++.+.++++.+ ++.++|
T Consensus 61 ---~~~~~~~~~v~~~-~~~~~~ 79 (79)
T PF03061_consen 61 ---RKSFTVEVEVYSE-DGRLCA 79 (79)
T ss_dssp ---SSEEEEEEEEEET-TSCEEE
T ss_pred ---CEEEEEEEEEEEC-CCcEEC
Confidence 4567888888875 666665
No 27
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=98.54 E-value=9.2e-07 Score=65.66 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=70.5
Q ss_pred ccccccccCccccccchhhHHHHHHhhccHhHHh-------hCcceEEEEEEcccCCCCCEEEEEEEeeccccccCCCCC
Q 019296 225 GLAPRWSDMDANQHVNNVKYIGWILESVPIHVLE-------DYNMTSMTLEYRRECRQSNLLESLTSTTASVTEDSNNNN 297 (343)
Q Consensus 225 ~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~-------~~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~ 297 (343)
.+.+++.|+|.++|+|+..|+.|+... ...++. ...+.+++++|++|+++||.+.+.+++... +
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~----~---- 74 (100)
T cd03440 4 RLTVTPEDIDGGGIVHGGLLLALADEA-AGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRV----G---- 74 (100)
T ss_pred EEEeCHHHcCcCCccchHHHHHHHHHH-HHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEEEec----c----
Confidence 467899999999999999999999544 455544 246788999999999999999999999872 2
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEE
Q 019296 298 KNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEW 337 (343)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W 337 (343)
...+.+...+..+ +|.+++.+...|
T Consensus 75 --------------~~~~~~~~~~~~~-~~~~~~~~~~~~ 99 (100)
T cd03440 75 --------------RSSVTVEVEVRNE-DGKLVATATATF 99 (100)
T ss_pred --------------ccEEEEEEEEECC-CCCEEEEEEEEe
Confidence 2345666666654 689999998776
No 28
>PLN02647 acyl-CoA thioesterase
Probab=98.45 E-value=1.2e-05 Score=80.28 Aligned_cols=218 Identities=11% Similarity=0.046 Sum_probs=139.4
Q ss_pred EeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEe-eEEEEeecCCCCCEEEEEEEEe
Q 019296 63 SIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTR-IHIQVQRYSSWGDVVEIDTWVD 141 (343)
Q Consensus 63 ~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r-~~ie~~r~p~~gD~V~I~T~v~ 141 (343)
.++..+.++.|.+.-..++.+|.+++..-+...--.. +.....+..|.+. -+|+|.+|++.||.|.|...+.
T Consensus 99 ~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~-------~~~~~p~~vVTAsVD~i~F~~Pi~~g~~v~l~g~Vt 171 (437)
T PLN02647 99 ILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDD-------DSTTRPLLLVTASVDKIVLKKPIRVDVDLKIVGAVT 171 (437)
T ss_pred hhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCC-------cccCCcceEEEEEECcEEEcCCCcCCcEEEEEEEEE
Confidence 5777779999999999999999998876554432110 0111222334433 3789999999999999999999
Q ss_pred ecCCceEEEEEEEEECC------CCcEEEEEEEEEEEEeCCCCceeCCCHHH------HHhhcccccc---cc-------
Q 019296 142 ASGKNAMRRDWIIRDYR------TQDIITRATSTWVIMNRETRRLSKIPEQV------RQEVLPFYLN---TF------- 199 (343)
Q Consensus 142 ~~~~~~~~r~f~I~d~~------~Ge~ia~a~s~wV~vD~~trRp~riP~ev------~e~l~~~~~~---~~------- 199 (343)
..|++|+...-.++... ...++++|..++|.+|.+++||+++|+-. +..+...... +.
T Consensus 172 ~vGrSSMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA~D~~~gkp~pVp~l~pete~Ek~~~e~a~~R~~~Rk~~r~~~~ 251 (437)
T PLN02647 172 WVGRSSMEIQLEVIQPTKDESNTSDSVALTANFTFVARDSKTGKSAPVNRLSPETEEEKLLFEEAEARNKLRKKKRGEQK 251 (437)
T ss_pred EecCCeEEEEEEEEEccccCCCCcEEEEEEEEEEEEEEcCCCCCeeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999998877777531 12478899999999998789999887532 1111100000 00
Q ss_pred --ccccccc----------ccCCccCCCcc-----cccccccccccccccCccccccchhhHHHHHHhhccHhHHh--hC
Q 019296 200 --AIDKEKT----------DVGKIDKLTDQ-----TAGRIRSGLAPRWSDMDANQHVNNVKYIGWILESVPIHVLE--DY 260 (343)
Q Consensus 200 --~~~~~~~----------~~~ki~~l~~~-----~~~~~~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~--~~ 260 (343)
..+.+.. .+...+.+.+. ........+.+.+.|...+|.+.-..-+.|+.|.+-.-..+ ..
T Consensus 252 ~~~~~~e~~~l~~l~~~~~~~~~~p~l~~~~~v~m~dT~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~a~~ 331 (437)
T PLN02647 252 REFENGEAERLEALLAEGRVFCDMPALADRNSILIRDTRLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAFAGL 331 (437)
T ss_pred ccCCchHHHHHHHHHHhccccccCcccCCccceeccccceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHHcCC
Confidence 0000000 00001111000 00112334568899999999999999999997766432221 12
Q ss_pred cce--E-EEEEEcccCCCCCEEEEEEEeec
Q 019296 261 NMT--S-MTLEYRRECRQSNLLESLTSTTA 287 (343)
Q Consensus 261 ~~~--~-~~i~Y~~e~~~gd~i~v~t~~~~ 287 (343)
.+. . =.|.|++|+..||.|.+...+.-
T Consensus 332 ~~vt~svd~v~F~~PV~vGdil~l~A~V~y 361 (437)
T PLN02647 332 RPYFLEVDHVDFLRPVDVGDFLRFKSCVLY 361 (437)
T ss_pred ceEEEEecceEecCccccCcEEEEEEEEEE
Confidence 222 2 27899999999999998765543
No 29
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=98.33 E-value=3e-05 Score=66.93 Aligned_cols=113 Identities=13% Similarity=0.143 Sum_probs=90.0
Q ss_pred EEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEEEE
Q 019296 60 QTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEIDTW 139 (343)
Q Consensus 60 ~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~T~ 139 (343)
....|-+.|++++|.++=..++.||.+++.-.+...- .+..--+.=-++.|.+|.+.||.|.+.++
T Consensus 16 ~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a--------------~~~vVTasvd~v~F~~Pv~vGd~v~~~a~ 81 (157)
T COG1607 16 LRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHA--------------GGRVVTASVDSVDFKKPVRVGDIVCLYAR 81 (157)
T ss_pred EEEEecCCccCcccccccHHHHHHHHHHHHHHHHHHh--------------CCeEEEEEeceEEEccccccCcEEEEEEE
Confidence 5788999999999999999999999999876654421 12222222347999999999999999999
Q ss_pred EeecCCceEEEEEEEEECC----CCcEEEEEEEEEEEEeCCCCceeCCCHHH
Q 019296 140 VDASGKNAMRRDWIIRDYR----TQDIITRATSTWVIMNRETRRLSKIPEQV 187 (343)
Q Consensus 140 v~~~~~~~~~r~f~I~d~~----~Ge~ia~a~s~wV~vD~~trRp~riP~ev 187 (343)
+...|+.|+...-+++..+ .....+.|..++|.+|-+ +||.++|+..
T Consensus 82 v~~~GrTSm~V~Vev~~~~~~~~~~~~~t~~~ft~VAvd~~-gkP~~vp~~~ 132 (157)
T COG1607 82 VVYTGRTSMEVGVEVWAEDIRSGERRLATSAYFTFVAVDED-GKPTPVPREE 132 (157)
T ss_pred EeecCcccEEEEEEEEEecccCCcceEeeeEEEEEEEECCC-CCcccCCccC
Confidence 9999999998887777531 234567888999999965 9999999754
No 30
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=98.09 E-value=3.3e-05 Score=61.89 Aligned_cols=92 Identities=11% Similarity=0.034 Sum_probs=72.5
Q ss_pred cccccccccccCccccccchhhHHHHHHhhccHhHHhh-------CcceEEEEEEcccCCCCCEEEEEEEeeccccccCC
Q 019296 222 IRSGLAPRWSDMDANQHVNNVKYIGWILESVPIHVLED-------YNMTSMTLEYRRECRQSNLLESLTSTTASVTEDSN 294 (343)
Q Consensus 222 ~~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~~-------~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~ 294 (343)
....+++.+.++|..|++++..|..|+ |.+...++.. ..+.+++++|++|+.. +.+.+.+++... +
T Consensus 14 ~~~~~~~~~~~~n~~g~vhgg~l~~l~-d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~-~~v~~~~~v~~~----g- 86 (113)
T cd03443 14 VVLRLPVRPRHLNPGGIVHGGAIATLA-DTAGGLAALSALPPGALAVTVDLNVNYLRPARG-GDLTARARVVKL----G- 86 (113)
T ss_pred EEEEeeCcHhhcCCCCeEeHHHHHHHH-HHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC-CeEEEEEEEEec----C-
Confidence 455788999999999999999999999 5555444322 2468899999999999 999999998872 2
Q ss_pred CCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEE
Q 019296 295 NNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQ 338 (343)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~ 338 (343)
+....+...++.+ +|+++++|...|.
T Consensus 87 -----------------~~~~~~~~~~~~~-~~~~~a~a~~~~~ 112 (113)
T cd03443 87 -----------------RRLAVVEVEVTDE-DGKLVATARGTFA 112 (113)
T ss_pred -----------------ceEEEEEEEEECC-CCCEEEEEEEEEe
Confidence 3345666677653 6899999999986
No 31
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=98.04 E-value=2.1e-05 Score=71.10 Aligned_cols=89 Identities=9% Similarity=-0.033 Sum_probs=68.9
Q ss_pred eeEEEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEE
Q 019296 56 FVYRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVE 135 (343)
Q Consensus 56 ~~f~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~ 135 (343)
..+...|.||++|+|.+|||||+.|++|+.|.-..++..+- ...++.++|.+|..+|++|+
T Consensus 151 ~s~~~~f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~~~-------------------~p~r~~l~y~keva~G~~it 211 (250)
T COG3884 151 ASEIHDFPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKLY-------------------GPLRLTLEYVKEVAPGEKIT 211 (250)
T ss_pred ccccccceeEEEeeccccccccceehHHHHHHHhhhhHhhc-------------------ccceeEEEEEcccCCCCeEE
Confidence 35667899999999999999999999999998775554321 13588899999999999999
Q ss_pred EEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEE
Q 019296 136 IDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTW 170 (343)
Q Consensus 136 I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~w 170 (343)
|.+.....+..- .| .. +|.+.+.+..+|
T Consensus 212 i~~e~~~~~s~~-----~f-~~-d~~v~~lt~i~~ 239 (250)
T COG3884 212 IVYEVHPLESKH-----QF-TS-DGQVNALTYIVG 239 (250)
T ss_pred EEEEEcccCcee-----ee-cC-CcceEEEEEEEe
Confidence 999998766442 12 22 677776666655
No 32
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=97.89 E-value=0.00045 Score=56.35 Aligned_cols=98 Identities=12% Similarity=-0.027 Sum_probs=80.9
Q ss_pred EEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEEE
Q 019296 59 RQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEIDT 138 (343)
Q Consensus 59 ~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~T 138 (343)
...+.+....+++.|.+.=..++.+++.+........ ...+...+.+..+++|.+|++-| .|.++.
T Consensus 19 ~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~-------------~~~~~~~vt~~l~i~f~~p~~~g-~l~a~a 84 (117)
T TIGR00369 19 EATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLC-------------NSGGQAVVGLELNANHLRPAREG-KVRAIA 84 (117)
T ss_pred EEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhh-------------cCCCceEEEEEEEeeeccccCCC-EEEEEE
Confidence 5678889999999999999999999998873322111 11234567789999999999999 999999
Q ss_pred EEeecCCceEEEEEEEEECCCCcEEEEEEEEEE
Q 019296 139 WVDASGKNAMRRDWIIRDYRTQDIITRATSTWV 171 (343)
Q Consensus 139 ~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV 171 (343)
++.+.++.....+-+++|. +|+++|+|++++.
T Consensus 85 ~v~~~gr~~~~~~~~i~~~-~g~~va~~~~t~~ 116 (117)
T TIGR00369 85 QVVHLGRQTGVAEIEIVDE-QGRLCALSRGTTA 116 (117)
T ss_pred EEEecCceEEEEEEEEECC-CCCEEEEEEEEEc
Confidence 9999999999999999996 7999999998864
No 33
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=97.80 E-value=0.00099 Score=54.18 Aligned_cols=96 Identities=15% Similarity=0.061 Sum_probs=79.0
Q ss_pred EEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEEEE
Q 019296 60 QTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEIDTW 139 (343)
Q Consensus 60 ~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~T~ 139 (343)
..+.++...+++.|.+.=..++.+++.+....+... +..-+....+++|.+|.+.||.|.++.+
T Consensus 18 ~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~----------------~~~~~t~~~~i~f~rp~~~G~~l~~~a~ 81 (114)
T TIGR02286 18 VAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNSY----------------GDAAVAAQCTIDFLRPGRAGERLEAEAV 81 (114)
T ss_pred EEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcCC----------------CCceEEEEEEEEEecCCCCCCEEEEEEE
Confidence 478888999999999999999999999864332111 1112457889999999999999999999
Q ss_pred EeecCCceEEEEEEEEECCCCcEEEEEEEEEEE
Q 019296 140 VDASGKNAMRRDWIIRDYRTQDIITRATSTWVI 172 (343)
Q Consensus 140 v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~ 172 (343)
+.+.++.....+-.+++. +|+++|.++.+|-.
T Consensus 82 v~~~g~~~~~~~~~i~~~-~~~~va~~~~t~~~ 113 (114)
T TIGR02286 82 EVSRGGRTGTYDVEVVNQ-EGELVALFRGTSRR 113 (114)
T ss_pred EEEeCCcEEEEEEEEEcC-CCCEEEEEEEEEEE
Confidence 999998888888899985 89999999998854
No 34
>PRK10293 acyl-CoA esterase; Provisional
Probab=97.44 E-value=0.0068 Score=51.26 Aligned_cols=100 Identities=14% Similarity=-0.076 Sum_probs=82.2
Q ss_pred EEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEEE
Q 019296 59 RQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEIDT 138 (343)
Q Consensus 59 ~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~T 138 (343)
+.++.|+...+.+.|.++=..++.+++.+........ ...+...+-.+.+++|.+|.+-| .|+.+.
T Consensus 37 ~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~-------------~~~~~~~vTiel~infl~p~~~g-~l~a~a 102 (136)
T PRK10293 37 EATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLC-------------TEGEQKVVGLEINANHVRSAREG-RVRGVC 102 (136)
T ss_pred EEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhc-------------ccCCceEEEEEEEeEEecccCCc-eEEEEE
Confidence 4578888888999999999999999987654332221 11345678889999999999877 699999
Q ss_pred EEeecCCceEEEEEEEEECCCCcEEEEEEEEEEEE
Q 019296 139 WVDASGKNAMRRDWIIRDYRTQDIITRATSTWVIM 173 (343)
Q Consensus 139 ~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~v 173 (343)
++.+.|+.....+-+++|+ +|++++.++.++.++
T Consensus 103 ~vv~~Gr~~~~~~~~v~d~-~g~l~A~~~~t~~i~ 136 (136)
T PRK10293 103 KPLHLGSRHQVWQIEIFDE-KGRLCCSSRLTTAIL 136 (136)
T ss_pred EEEecCCCEEEEEEEEEeC-CCCEEEEEEEEEEEC
Confidence 9999999999999999996 899999999998763
No 35
>PRK10254 thioesterase; Provisional
Probab=97.29 E-value=0.019 Score=48.61 Aligned_cols=100 Identities=10% Similarity=-0.077 Sum_probs=83.2
Q ss_pred EEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEEE
Q 019296 59 RQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEIDT 138 (343)
Q Consensus 59 ~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~T 138 (343)
+.++.|+...+.+.|.++=..++.+++.|........ ...+...+-++..++|.+|.+-| .|..+.
T Consensus 37 ~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~-------------~~~g~~~vTiel~in~Lrp~~~g-~l~a~a 102 (137)
T PRK10254 37 EAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLM-------------TRDGQCVVGTELNATHHRPVSEG-KVRGVC 102 (137)
T ss_pred EEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhh-------------CCCCCeEEEEEEEeEEeccCcCC-eEEEEE
Confidence 4577788888999999999999999998765444321 12356789999999999999876 799999
Q ss_pred EEeecCCceEEEEEEEEECCCCcEEEEEEEEEEEE
Q 019296 139 WVDASGKNAMRRDWIIRDYRTQDIITRATSTWVIM 173 (343)
Q Consensus 139 ~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~v 173 (343)
.+.+.|+.....+-+++|. +|++++.++.+..++
T Consensus 103 ~vi~~Gr~~~v~~~~v~d~-~g~l~a~~~~t~~i~ 136 (137)
T PRK10254 103 QPLHLGRQNQSWEIVVFDE-QGRRCCTCRLGTAVL 136 (137)
T ss_pred EEEecCcCEEEEEEEEEcC-CCCEEEEEEEEEEEe
Confidence 9999999999999999996 899999999887664
No 36
>COG5496 Predicted thioesterase [General function prediction only]
Probab=97.24 E-value=0.015 Score=48.05 Aligned_cols=110 Identities=16% Similarity=0.168 Sum_probs=87.4
Q ss_pred CCCeeEEEEEEeeeCCCCCC-------CCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEe
Q 019296 53 EDRFVYRQTFSIRSYEIGPD-------KTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQ 125 (343)
Q Consensus 53 ~~~~~f~~~~~Vr~~d~D~~-------G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~ 125 (343)
++++.++.++.|+...+++- ..+--+.++.||++|+.+.+... ...|.+-|-++..++-.
T Consensus 2 ~~g~~~e~~~lv~dn~t~~~~~~~~~~~VlATp~mi~~~E~a~~el~~~~-------------Ld~g~ttVG~ev~vrHl 68 (130)
T COG5496 2 MDGLTLEGEFLVRDNHTVPPAEGSGMLNVLATPAMIGFMENASYELLQPY-------------LDNGETTVGTEVLVRHL 68 (130)
T ss_pred CCceeeEEEEEecccccCchhHhCCccceeehHHHHHHHHHHHHHHHHhh-------------CcCCcceeeEEEEeeec
Confidence 45678888999998888832 33445678899999988877531 23477889999999999
Q ss_pred ecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEEEEeCCC
Q 019296 126 RYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWVIMNRET 177 (343)
Q Consensus 126 r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD~~t 177 (343)
++.-.|.+|.|.+.+.++.+....+.-+..+ +|+.+++|+.+-+.+|.++
T Consensus 69 a~~~~G~~V~i~~~l~~v~Gr~v~f~i~a~~--~~~~Ig~g~h~R~iv~~~k 118 (130)
T COG5496 69 AATPPGLTVTIGARLEKVEGRKVKFRIIAME--GGDKIGEGTHTRVIVPREK 118 (130)
T ss_pred cCCCCCCeEEEEEEEEEEeccEEEEEEEEee--CCcEEeeeEEEEEEecHHH
Confidence 9999999999999999998777766555553 7999999999999988653
No 37
>PRK11688 hypothetical protein; Provisional
Probab=97.14 E-value=0.017 Score=49.67 Aligned_cols=111 Identities=13% Similarity=0.126 Sum_probs=79.6
Q ss_pred EEEEEeeeCCCC--CCCCcCHHHHHHHHHHHHHHHHHhcCCC-CCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEE
Q 019296 59 RQTFSIRSYEIG--PDKTATMETLMNLLQETALNHVTSSGLA-GNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVE 135 (343)
Q Consensus 59 ~~~~~Vr~~d~D--~~G~v~~~~yl~~lqeaa~~~~~~lG~~-~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~ 135 (343)
...+.++...++ +.|.+.=..++.+++.+....+...... ...... ..........+-++++++|.+|.+ |+.|+
T Consensus 40 ~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~-~~~~~~~~~~vTi~l~i~fl~p~~-g~~l~ 117 (154)
T PRK11688 40 ELSFKMQPELVGNIAQSILHGGVIASVLDVAGGLVCVGGILARHEDISE-EELRQRLSRLGTIDLRVDYLRPGR-GERFT 117 (154)
T ss_pred EEEeeCCHHHcCCCCcCeeeHHHHHHHHHHHHHHHHHhhcccccccccc-cccccccccceEEEEEEEeeccCC-CCeEE
Confidence 346677777785 6899999999999988876554332111 000000 000011223467799999999996 99999
Q ss_pred EEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEEE
Q 019296 136 IDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWVI 172 (343)
Q Consensus 136 I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~ 172 (343)
++.++.+.++.....+-+|++. +|+++|+++.+|..
T Consensus 118 a~a~v~~~g~r~~~~~~~i~~~-~g~lvA~a~~t~~v 153 (154)
T PRK11688 118 ATSSVLRAGNKVAVARMELHNE-QGVHIASGTATYLV 153 (154)
T ss_pred EEEEEEEccCCEEEEEEEEECC-CCCEEEEEEEEEEe
Confidence 9999999998888888899986 79999999998863
No 38
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.87 E-value=0.041 Score=46.47 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=85.3
Q ss_pred EEEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEE
Q 019296 58 YRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEID 137 (343)
Q Consensus 58 f~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~ 137 (343)
-+..+.+......+.|.++=..++.+++.+.........- ....-+-+..+++|.||.+.|+ |+.+
T Consensus 36 ~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~-------------~~~~~~ti~l~i~flr~~~~g~-v~a~ 101 (141)
T COG2050 36 AEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLG-------------VVALAVTLELNINFLRPVKEGD-VTAE 101 (141)
T ss_pred EEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccC-------------ccceeEEEEEEehhccCCCCCe-EEEE
Confidence 3457778888888999999999999999998766654321 1122377899999999999999 9999
Q ss_pred EEEeecCCceEEEEEEEEECCCCcEEEEEEEEEEEEeC
Q 019296 138 TWVDASGKNAMRRDWIIRDYRTQDIITRATSTWVIMNR 175 (343)
Q Consensus 138 T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD~ 175 (343)
..+.+.|+.....+.++++.+.++++|.++.++..++.
T Consensus 102 a~v~~~G~~~~v~~i~v~~~~~~~lva~~~~t~~v~~~ 139 (141)
T COG2050 102 ARVLHLGRRVAVVEIEVKNDEGGRLVAKGTGTYAVLRK 139 (141)
T ss_pred EEEEeeCCEEEEEEEEEEECCCCeEEEEEEEEEEEecC
Confidence 99999999988888899965467999999999988864
No 39
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=96.81 E-value=0.024 Score=48.20 Aligned_cols=99 Identities=16% Similarity=0.084 Sum_probs=81.1
Q ss_pred EEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEEEE
Q 019296 60 QTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEIDTW 139 (343)
Q Consensus 60 ~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~T~ 139 (343)
-.++|....|+++|.+.-...+.+.+......+... .....-|-+.+++.|..+...||.|.|+..
T Consensus 41 ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~--------------~~~~~gvsvdLsvsyL~~AklGe~l~i~a~ 106 (148)
T KOG3328|consen 41 CELKVTPDHLNRFKTLHGGATATLVDLITSAALLMT--------------SGFKPGVSVDLSVSYLSSAKLGEELEIEAT 106 (148)
T ss_pred EEEEeCHHHcCccccccccchhhHHHHHhhHHHHhc--------------cCCCCceEEEEEhhhccccCCCCeEEEEEE
Confidence 589999999999999999998888888766532211 112234788999999999999999999999
Q ss_pred EeecCCceEEEEEEEEECCCCcEEEEEEEEEEE
Q 019296 140 VDASGKNAMRRDWIIRDYRTQDIITRATSTWVI 172 (343)
Q Consensus 140 v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~ 172 (343)
+.+.|+.-...+.+++...+|++++.++-+..+
T Consensus 107 ~vr~Gk~la~t~v~l~~K~t~kiia~grhtk~~ 139 (148)
T KOG3328|consen 107 VVRVGKTLAFTDVELRRKSTGKIIAKGRHTKYF 139 (148)
T ss_pred EeecCceEEEEEEEEEEcCCCeEEEecceEEEe
Confidence 999999988888899988789999998755433
No 40
>PLN02322 acyl-CoA thioesterase
Probab=96.61 E-value=0.13 Score=44.41 Aligned_cols=101 Identities=11% Similarity=-0.007 Sum_probs=80.0
Q ss_pred EEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEEEE
Q 019296 60 QTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEIDTW 139 (343)
Q Consensus 60 ~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~T~ 139 (343)
..+.|+...+.+.|.+.=..++.+++.|.. +..... ..+...+-+++.++|.+|.+.|+.|..+..
T Consensus 30 ~~m~v~~~~~N~~G~vHGGv~atLaDta~g-~A~~~~-------------~~~~~~vTiel~infLrpa~~G~~L~Aea~ 95 (154)
T PLN02322 30 GRLPVSPMCCQPFKVLHGGVSALIAESLAS-LGAHMA-------------SGFKRVAGIQLSINHLKSADLGDLVFAEAT 95 (154)
T ss_pred EEEECCHHHcCCCCCccHHHHHHHHHHHHH-HHHhhc-------------cCCCceEEEEEEEEEeccCCCCCEEEEEEE
Confidence 467788888999999999999999986644 221110 112346889999999999999999999999
Q ss_pred EeecCCceEEEEEEEEECC-----CCcEEEEEEEEEEEEe
Q 019296 140 VDASGKNAMRRDWIIRDYR-----TQDIITRATSTWVIMN 174 (343)
Q Consensus 140 v~~~~~~~~~r~f~I~d~~-----~Ge~ia~a~s~wV~vD 174 (343)
+.+.|+.....+-+|++.. +|++++.++.+..++.
T Consensus 96 vv~~Gr~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~~~ 135 (154)
T PLN02322 96 PVSTGKTIQVWEVKLWKTTDKDKANKILISSSRVTLICNL 135 (154)
T ss_pred EEecCCCEEEEEEEEEECCCCcccCCeEEEEEEEEEEEcc
Confidence 9999999998899999831 2789999998886554
No 41
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=96.29 E-value=0.076 Score=42.94 Aligned_cols=94 Identities=10% Similarity=0.029 Sum_probs=67.6
Q ss_pred ccccccccccCccccccchhhHHHHHHhhccHhHHhh---CcceEEEEEEcccCCCCCEEEEEEEeeccccccCCCCCCC
Q 019296 223 RSGLAPRWSDMDANQHVNNVKYIGWILESVPIHVLED---YNMTSMTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKN 299 (343)
Q Consensus 223 ~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~~---~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~ 299 (343)
...+.++...+..+|-++=..++.++...+....... ..-.+++++|++|+..||.|.+..++... +
T Consensus 17 ~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~~~~~~t~~~~i~f~rp~~~G~~l~~~a~v~~~----g------ 86 (114)
T TIGR02286 17 RVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNSYGDAAVAAQCTIDFLRPGRAGERLEAEAVEVSR----G------ 86 (114)
T ss_pred EEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEEecCCCCCCEEEEEEEEEEe----C------
Confidence 3467888889999999999999999944432221111 12357899999999999999999998762 2
Q ss_pred CCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEe
Q 019296 300 KNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQS 339 (343)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~ 339 (343)
+....+.-.++. .+|+++|.++-+|..
T Consensus 87 ------------~~~~~~~~~i~~-~~~~~va~~~~t~~~ 113 (114)
T TIGR02286 87 ------------GRTGTYDVEVVN-QEGELVALFRGTSRR 113 (114)
T ss_pred ------------CcEEEEEEEEEc-CCCCEEEEEEEEEEE
Confidence 212223335565 589999999999975
No 42
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=96.26 E-value=0.054 Score=44.12 Aligned_cols=58 Identities=9% Similarity=0.064 Sum_probs=47.7
Q ss_pred cEEEEEeeEEEEeecCCCCCEEEEEEEEeecCC--ceEEEEEEEEECCCCcEEEEEEEEEE
Q 019296 113 LIWVVTRIHIQVQRYSSWGDVVEIDTWVDASGK--NAMRRDWIIRDYRTQDIITRATSTWV 171 (343)
Q Consensus 113 ~~wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~--~~~~r~f~I~d~~~Ge~ia~a~s~wV 171 (343)
-..+....+++|.+|.+.||+|.++.++.+... ..+.....+.+. +|++++++..+..
T Consensus 68 ~~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~~-~g~~v~~g~~~~~ 127 (128)
T cd03449 68 PGTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTNQ-NGEVVIEGEAVVL 127 (128)
T ss_pred ceEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEeC-CCCEEEEEEEEEe
Confidence 355677899999999999999999999987654 566777788885 7999999987643
No 43
>PRK10694 acyl-CoA esterase; Provisional
Probab=96.20 E-value=0.077 Score=44.64 Aligned_cols=97 Identities=8% Similarity=0.021 Sum_probs=70.9
Q ss_pred cccccccccCccccccchhhHHHHHHhhccHhHHhh----CcceEE-EEEEcccCCCCCEEEEEEEeeccccccCCCCCC
Q 019296 224 SGLAPRWSDMDANQHVNNVKYIGWILESVPIHVLED----YNMTSM-TLEYRRECRQSNLLESLTSTTASVTEDSNNNNK 298 (343)
Q Consensus 224 ~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~~----~~~~~~-~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~ 298 (343)
..+.+.+.|+..+|-+.--..+.|+.+.+-....+- ....++ .|+|++|++.||.|.+.+++... +
T Consensus 14 ~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~~~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~----g----- 84 (133)
T PRK10694 14 LRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKT----G----- 84 (133)
T ss_pred EEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHHcCCceEEEEECceEECCCcccCcEEEEEEEEEEc----c-----
Confidence 356788999999999999999999977654433211 234556 66999999999999999999873 3
Q ss_pred CCCCCCCCCCCCCCCCcEEEEEEEecC---C----CcEEEEEEEEEEecCC
Q 019296 299 NKNSHNHNSSNNRKADLEYTHLLRMQA---D----KAEIIRARSEWQSKDE 342 (343)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~h~l~~~~---d----g~~i~~~~t~W~~~~~ 342 (343)
++++....++..++ + ...++.+.-+++..+.
T Consensus 85 -------------~sS~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd~ 122 (133)
T PRK10694 85 -------------TTSISINIEVWVKKVASEPIGQRYKATEALFTYVAVDP 122 (133)
T ss_pred -------------CceEEEEEEEEEeecccCCCCcEEEEEEEEEEEEEECC
Confidence 45677777776421 1 2347788888887653
No 44
>PLN02647 acyl-CoA thioesterase
Probab=96.02 E-value=0.24 Score=49.86 Aligned_cols=115 Identities=11% Similarity=0.067 Sum_probs=81.9
Q ss_pred eEEEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEE
Q 019296 57 VYRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEI 136 (343)
Q Consensus 57 ~f~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I 136 (343)
..+..+.+.+.|.+..|.++=..++.|+.+++..-+.... .+-.-.+.=-.++|.+|...||.|.+
T Consensus 290 ~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~a--------------~~~~vt~svd~v~F~~PV~vGdil~l 355 (437)
T PLN02647 290 RLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAFA--------------GLRPYFLEVDHVDFLRPVDVGDFLRF 355 (437)
T ss_pred ceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHHc--------------CCceEEEEecceEecCccccCcEEEE
Confidence 3556778999999999999999999999998875443321 12223334458999999999999998
Q ss_pred EEEEeec-----CCceEEEEEE--EEEC--CCCcEEEEEEEEEEEEeC-CCCceeCCCH
Q 019296 137 DTWVDAS-----GKNAMRRDWI--IRDY--RTQDIITRATSTWVIMNR-ETRRLSKIPE 185 (343)
Q Consensus 137 ~T~v~~~-----~~~~~~r~f~--I~d~--~~Ge~ia~a~s~wV~vD~-~trRp~riP~ 185 (343)
+..+... ++.++..+-. ..++ .+++++.++..++|..|- ..++|+++|+
T Consensus 356 ~A~V~yt~~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva~d~~~~g~p~~Vp~ 414 (437)
T PLN02647 356 KSCVLYTELENSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTVRPEAAMKNGFKIRN 414 (437)
T ss_pred EEEEEEEeEEecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEEeccccCCCCccCCe
Confidence 7655544 4444544333 3333 245678899999999885 3678888875
No 45
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=95.46 E-value=0.47 Score=38.74 Aligned_cols=87 Identities=10% Similarity=-0.031 Sum_probs=60.8
Q ss_pred CcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEEEE
Q 019296 74 TATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWI 153 (343)
Q Consensus 74 ~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~ 153 (343)
.+.-.-.++++.+++..+....+. . ...+..+.+.-.+++|.+|.+.||++++++++...+........+
T Consensus 44 i~Pg~l~iE~~aQ~~~~~~~~~~~---------~-~~~~~~~l~~~~~~kf~~pv~pgd~l~i~~~v~~~~~~~~~~~~~ 113 (131)
T cd01288 44 IMPGVLIIEALAQAAGILGLKSLE---------D-FEGKLVYFAGIDKARFRKPVVPGDQLILEVELLKLRRGIGKFKGK 113 (131)
T ss_pred cCCchHHHHHHHHHHHHHhhhccc---------c-cCCcEEEEeeecccEEccccCCCCEEEEEEEEEEeeCCEEEEEEE
Confidence 334444667777776655432210 0 112344555558999999999999999999999887777777777
Q ss_pred EEECCCCcEEEEEEEEEEE
Q 019296 154 IRDYRTQDIITRATSTWVI 172 (343)
Q Consensus 154 I~d~~~Ge~ia~a~s~wV~ 172 (343)
++. +|+++++|+.+++.
T Consensus 114 ~~~--~g~~v~~~~~~~~~ 130 (131)
T cd01288 114 AYV--DGKLVAEAELMFAI 130 (131)
T ss_pred EEE--CCEEEEEEEEEEEE
Confidence 764 68999999887764
No 46
>PLN02864 enoyl-CoA hydratase
Probab=95.32 E-value=2 Score=41.42 Aligned_cols=59 Identities=7% Similarity=0.030 Sum_probs=48.1
Q ss_pred EEEeeEEEEeecCCCCCEEEEEEEEeecCC----ceEEEEEEEEECCCCcEEEEEEEEEEEEe
Q 019296 116 VVTRIHIQVQRYSSWGDVVEIDTWVDASGK----NAMRRDWIIRDYRTQDIITRATSTWVIMN 174 (343)
Q Consensus 116 Vv~r~~ie~~r~p~~gD~V~I~T~v~~~~~----~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD 174 (343)
|=.+..|++++|+..++.+++++++..+.. ..+..+..+.+..+|+++++..++.++-.
T Consensus 95 VHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~Rg 157 (310)
T PLN02864 95 LHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLRG 157 (310)
T ss_pred eeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEeC
Confidence 456789999999999999999999997632 22567777888558999999998888765
No 47
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=95.24 E-value=0.39 Score=40.14 Aligned_cols=99 Identities=16% Similarity=0.086 Sum_probs=66.1
Q ss_pred eEEEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEE
Q 019296 57 VYRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEI 136 (343)
Q Consensus 57 ~f~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I 136 (343)
....+++.++.-.+..|.++-.+++...+-+....+... + ..+..|++..++|+|.+|.+- .|..
T Consensus 30 ~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~-l------------~~~~~~~~k~~~i~f~kpa~g--~v~a 94 (132)
T PF14539_consen 30 RVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSN-L------------GDKYRVWDKSAEIDFLKPARG--DVTA 94 (132)
T ss_dssp EEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHH-S-------------TTEEEEEEEEEEEE-S---S---EEE
T ss_pred EEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHh-C------------CCcEEEEEEeeEEEEEeccCC--cEEE
Confidence 345678888899999999999999999999877665432 1 126778899999999999753 3444
Q ss_pred EEEEee--cC-CceEEEEEEEEECCCCcEEEEEEEEEE
Q 019296 137 DTWVDA--SG-KNAMRRDWIIRDYRTQDIITRATSTWV 171 (343)
Q Consensus 137 ~T~v~~--~~-~~~~~r~f~I~d~~~Ge~ia~a~s~wV 171 (343)
+..++. ++ +........++|. +|++++++..+|.
T Consensus 95 ~~~~~~e~~~~~~~~~~~v~i~D~-~G~~Va~~~~t~~ 131 (132)
T PF14539_consen 95 TAELTEEQIGERGELTVPVEITDA-DGEVVAEATITWY 131 (132)
T ss_dssp EEE-TCCHCCHEEEEEEEEEEEET-TC-EEEEEEEEEE
T ss_pred EEEcCHHHhCCCcEEEEEEEEEEC-CCCEEEEEEEEEE
Confidence 444443 33 4556677888996 8999999999984
No 48
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=95.20 E-value=0.16 Score=49.26 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=89.3
Q ss_pred cccccccCCCeeEEEEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEe
Q 019296 46 CLLGRFVEDRFVYRQTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQ 125 (343)
Q Consensus 46 ~~~g~~~~~~~~f~~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~ 125 (343)
..+..|.+..-.+...++|.+.-++..|.+.+..+..++.++....+... .+-..++=.+.+-|.
T Consensus 321 ~I~~~l~e~~~~~~~t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~---------------~~~niiIE~i~iyfl 385 (432)
T COG4109 321 QIANNLSEKGDEYGVTVEVEPQMINSLGTISNGVFTELLTEVVQRVLRKK---------------KKRNIIIENITIYFL 385 (432)
T ss_pred HHHhhhhhhccccceEEEechhhccccccchHHHHHHHHHHHHHHHHHHh---------------cCCceEEEeeeeeee
Confidence 34455676666677779999999999999999999999999988666542 223467788999999
Q ss_pred ecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEE
Q 019296 126 RYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTW 170 (343)
Q Consensus 126 r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~w 170 (343)
+|....+.++|..++.+.||.+...+++|+. +|.+++.|-...
T Consensus 386 k~vqid~~l~I~prIl~~gR~~a~idvei~~--~~~ivaKAiv~~ 428 (432)
T COG4109 386 KPVQIDSVLEIYPRILEEGRKFAKIDVEIYH--DGQIVAKAIVTV 428 (432)
T ss_pred cceecccEEEEeeeeeccccccceeEEEEee--Ccchhhhheeee
Confidence 9999999999999999999999999999998 577787775443
No 49
>PRK11688 hypothetical protein; Provisional
Probab=94.96 E-value=0.27 Score=42.19 Aligned_cols=92 Identities=8% Similarity=0.069 Sum_probs=64.6
Q ss_pred cccccccccccCc--cccccchhhHHHHHHhhccHhHHhh-------------------CcceEEEEEEcccCCCCCEEE
Q 019296 222 IRSGLAPRWSDMD--ANQHVNNVKYIGWILESVPIHVLED-------------------YNMTSMTLEYRRECRQSNLLE 280 (343)
Q Consensus 222 ~~~~~~vr~~DiD--~ngHVNN~~Y~~w~~e~~~~~~l~~-------------------~~~~~~~i~Y~~e~~~gd~i~ 280 (343)
....++++...+. ..|.++=......+..++....+.. ..=.+++++|++|+. |+.|.
T Consensus 39 ~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~-g~~l~ 117 (154)
T PRK11688 39 VELSFKMQPELVGNIAQSILHGGVIASVLDVAGGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVDYLRPGR-GERFT 117 (154)
T ss_pred EEEEeeCCHHHcCCCCcCeeeHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceEEEEEEEeeccCC-CCeEE
Confidence 3456778888785 5689999999999954443333211 112578999999996 99999
Q ss_pred EEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEE-EEEecCCCcEEEEEEEEEE
Q 019296 281 SLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTH-LLRMQADKAEIIRARSEWQ 338 (343)
Q Consensus 281 v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~l~~~~dg~~i~~~~t~W~ 338 (343)
...++... + .++.+.. .++. ++|+++|+++.+|.
T Consensus 118 a~a~v~~~----g-------------------~r~~~~~~~i~~-~~g~lvA~a~~t~~ 152 (154)
T PRK11688 118 ATSSVLRA----G-------------------NKVAVARMELHN-EQGVHIASGTATYL 152 (154)
T ss_pred EEEEEEEc----c-------------------CCEEEEEEEEEC-CCCCEEEEEEEEEE
Confidence 99998872 2 2343433 4554 47999999999885
No 50
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=94.90 E-value=1.3 Score=37.40 Aligned_cols=86 Identities=8% Similarity=0.019 Sum_probs=58.9
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEe-eEEEEeecCCCCCEEEEEEEEeecCCceEEEEEE
Q 019296 75 ATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTR-IHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWI 153 (343)
Q Consensus 75 v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r-~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~ 153 (343)
+.-..+++++-+++..++... . ...+..+.+.. -+++|.+|.+.||+|+++.++...++........
T Consensus 60 ~PG~l~iE~~aQ~~~~~~~~~--~----------~~~~~~~~l~gi~~~kF~~pv~pGd~l~i~~~i~~~~~~~v~~~~~ 127 (147)
T PRK00006 60 MPGVLIIEAMAQAAGVLALKS--E----------ENKGKLVYFAGIDKARFKRPVVPGDQLILEVELLKQRRGIWKFKGV 127 (147)
T ss_pred CchhHHHHHHHHHHHHHHhcC--c----------CcCCcEEEEeeeeEEEEccccCCCCEEEEEEEEEEeeCCEEEEEEE
Confidence 444456666666655443211 1 01233344444 4799999999999999999999877666677777
Q ss_pred EEECCCCcEEEEEEEEEEEEe
Q 019296 154 IRDYRTQDIITRATSTWVIMN 174 (343)
Q Consensus 154 I~d~~~Ge~ia~a~s~wV~vD 174 (343)
+.. +|+++++|+...+.-|
T Consensus 128 ~~~--~g~~v~~~~~~~~~~~ 146 (147)
T PRK00006 128 ATV--DGKLVAEAELMFAIRD 146 (147)
T ss_pred EEE--CCEEEEEEEEEEEEEc
Confidence 764 7999999999887543
No 51
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=94.61 E-value=0.28 Score=40.12 Aligned_cols=55 Identities=16% Similarity=0.127 Sum_probs=44.1
Q ss_pred EEEEeeEEEEeecCCCCCEEEEEEEEeecCCc-eEEEEEEEEECCCCcEEEEEEEEE
Q 019296 115 WVVTRIHIQVQRYSSWGDVVEIDTWVDASGKN-AMRRDWIIRDYRTQDIITRATSTW 170 (343)
Q Consensus 115 wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~-~~~r~f~I~d~~~Ge~ia~a~s~w 170 (343)
..+.+.+++|.+|...||+|+++.++.+.... ......++.+. +|+++++++.+.
T Consensus 67 ~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~nq-~G~~v~~g~a~v 122 (123)
T cd03455 67 ARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWARNS-EGDHVMAGTATV 122 (123)
T ss_pred ceEEEEEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEEcC-CCCEEEeEEEEE
Confidence 45567899999999999999999999875432 55677788885 899988887654
No 52
>KOG4366 consensus Predicted thioesterase [General function prediction only]
Probab=94.52 E-value=0.0073 Score=53.04 Aligned_cols=107 Identities=9% Similarity=-0.052 Sum_probs=84.8
Q ss_pred EEEeeeCCCCCCC-CcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEEEE
Q 019296 61 TFSIRSYEIGPDK-TATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEIDTW 139 (343)
Q Consensus 61 ~~~Vr~~d~D~~G-~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~T~ 139 (343)
+...-..|+|-.- |+||+.|++=+.-||.+|....|+- ..+...+...|..-.-+.|.|.++.=++..|.|+
T Consensus 54 ~g~cls~dlDtll~HmnNArYfrElDfAR~~~~~r~~l~-------~~lr~~~~~~v~~As~~ryrr~Irpfh~y~v~sR 126 (213)
T KOG4366|consen 54 EGLCLSTDLDTLLSHMNNARYFRELDFARVNFYCRTGLY-------LMLRSKRGPYVQGASVFRYRREIRPFHPYSVSSR 126 (213)
T ss_pred cceeecchHHHHHHHhhhhHHHHHhhHHHHHHHHHHhHH-------HHHHhcCCCeeechhhhhhhhhcCCCCccceeeE
Confidence 4455567888666 9999999999999999999887642 2345556666777777889999999999999999
Q ss_pred EeecCCceEEEEEEEEECCCCcEEEEEEEEEEEEe
Q 019296 140 VDASGKNAMRRDWIIRDYRTQDIITRATSTWVIMN 174 (343)
Q Consensus 140 v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD 174 (343)
+..-....++.+.++....+|=+++-+.+..++.|
T Consensus 127 iI~WDekaiyle~rFv~~sd~fvcala~~kq~l~d 161 (213)
T KOG4366|consen 127 IICWDEKAIYLESRFVILSDGFVCALALTKQVLKD 161 (213)
T ss_pred EEEEchhhhhhhhheeeccCceEeehHHHHHHHhc
Confidence 99877666655555555558999999999999998
No 53
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=94.41 E-value=1.9 Score=36.22 Aligned_cols=99 Identities=14% Similarity=0.072 Sum_probs=68.3
Q ss_pred EEEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEEEE
Q 019296 60 QTFSIRSYEIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEIDTW 139 (343)
Q Consensus 60 ~~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~T~ 139 (343)
.+..++. ...+.|.++=..++..+..|.+..+... + .. ...+..-|..+.+|+|.+|.+- + +.++..
T Consensus 26 v~~pl~~-n~N~~G~~hGG~l~tlad~a~~~~~~~~-~--------~~-~~~~~~~vt~~~~i~yl~P~~~-~-~~a~~~ 92 (138)
T TIGR02447 26 LSAPLAA-NINHHGTMFGGSLYTLATLSGWGLLWLR-L--------QE-LGIDGDIVIADSHIRYLAPVTG-D-PVANCE 92 (138)
T ss_pred EEeECCC-CcCCCCceehhHHHHHHHHHHHHHHHHH-H--------HH-hCCCCcEEEEEeeeEEcCCcCC-C-eEEEEE
Confidence 4566776 4899999999999999976544322110 0 00 1112345788999999999974 3 555555
Q ss_pred E-------------eecCCceEEEEEEEEECCCCcEEEEEEEEEEEE
Q 019296 140 V-------------DASGKNAMRRDWIIRDYRTQDIITRATSTWVIM 173 (343)
Q Consensus 140 v-------------~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~v 173 (343)
+ ..-++..+..+-+|++ +|+++|+++.+++.+
T Consensus 93 ~~~~~~~~~~~~~l~~~gr~~~~~~~~v~~--~~~lvA~~~g~~~~~ 137 (138)
T TIGR02447 93 APDLESWEAFLATLQRGGKARVKLEAQISS--DGKLAATFSGEYVAL 137 (138)
T ss_pred cCCHHHHHHHHHHHHhCCceEEEEEEEEEE--CCEEEEEEEEEEEEe
Confidence 5 3446677678888886 689999999998875
No 54
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=94.24 E-value=0.29 Score=37.79 Aligned_cols=58 Identities=12% Similarity=0.069 Sum_probs=51.2
Q ss_pred cEEEEEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEE
Q 019296 113 LIWVVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWV 171 (343)
Q Consensus 113 ~~wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV 171 (343)
..-+...+++.|.+|+..++.+..+.++...++......-.+++. +|++++.+.....
T Consensus 41 ~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~-~G~lva~~~~~~~ 98 (99)
T cd00556 41 SGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQR-DGKLVASATQSFL 98 (99)
T ss_pred CCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEECC-CCcEEEEEEEeEc
Confidence 345778999999999999999999999999999999999999985 7999999987653
No 55
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=94.20 E-value=0.82 Score=36.90 Aligned_cols=93 Identities=3% Similarity=-0.118 Sum_probs=64.8
Q ss_pred cccccccccccCccccccchhhHHHHHHhhccHhHHh------hCcceEEEEEEcccCCCCCEEEEEEEeeccccccCCC
Q 019296 222 IRSGLAPRWSDMDANQHVNNVKYIGWILESVPIHVLE------DYNMTSMTLEYRRECRQSNLLESLTSTTASVTEDSNN 295 (343)
Q Consensus 222 ~~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~------~~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~ 295 (343)
....+.+.+..+...|.++=.....++..++...... ...-.+++|+|++|+..| .|.+..++... +
T Consensus 18 ~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g-~l~a~a~v~~~----g-- 90 (117)
T TIGR00369 18 LEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG-KVRAIAQVVHL----G-- 90 (117)
T ss_pred EEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC-EEEEEEEEEec----C--
Confidence 3456788888899999999999999984333111111 123367899999999999 89998888762 2
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEE
Q 019296 296 NNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQ 338 (343)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~ 338 (343)
+....+.=.++. ++|+++++++.++.
T Consensus 91 ----------------r~~~~~~~~i~~-~~g~~va~~~~t~~ 116 (117)
T TIGR00369 91 ----------------RQTGVAEIEIVD-EQGRLCALSRGTTA 116 (117)
T ss_pred ----------------ceEEEEEEEEEC-CCCCEEEEEEEEEc
Confidence 222223335555 48999999998863
No 56
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=94.14 E-value=1.8 Score=35.09 Aligned_cols=86 Identities=10% Similarity=0.028 Sum_probs=63.9
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEE
Q 019296 72 DKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRD 151 (343)
Q Consensus 72 ~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~ 151 (343)
++.+--...++++-+++..++...+... . ........+.--.++|.+|.+.||+++++.++...+.......
T Consensus 41 ~p~lPg~~~iE~~aQ~~~~~~~~~~~~~-------~-~~~~~~~l~~~~~~kf~~~v~pgd~l~i~~~i~~~~~~~~~~~ 112 (131)
T cd00493 41 DPVMPGVLGIEAMAQAAAALAGLLGLGK-------G-NPPRLGYLAGVRKVKFRGPVLPGDTLTLEVELLKVRRGLGKFD 112 (131)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhccccc-------c-cCCcEEEEEEcceeEECCCcCCCCEEEEEEEEEEeeCCEEEEE
Confidence 3667778888999998888776543210 0 1123344444568999999999999999999998776667777
Q ss_pred EEEEECCCCcEEEEEE
Q 019296 152 WIIRDYRTQDIITRAT 167 (343)
Q Consensus 152 f~I~d~~~Ge~ia~a~ 167 (343)
..++. +|++++++.
T Consensus 113 ~~~~~--~g~~v~~~~ 126 (131)
T cd00493 113 GRAYV--DGKLVAEAE 126 (131)
T ss_pred EEEEE--CCEEEEEEE
Confidence 78886 599999988
No 57
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=93.99 E-value=0.68 Score=38.35 Aligned_cols=55 Identities=11% Similarity=-0.040 Sum_probs=43.1
Q ss_pred EEEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEE
Q 019296 116 VVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTW 170 (343)
Q Consensus 116 Vv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~w 170 (343)
.+.+.+++|.+|.+.||+|+++.++.+...-.....+.+.+.++|+++.++....
T Consensus 69 ~~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~nq~~g~~V~~g~~~v 123 (126)
T cd03447 69 RVRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEARNEETGELVLRGEAEV 123 (126)
T ss_pred eEEEEEEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEEECCCCCEEEEEEEEE
Confidence 3456799999999999999999999886555566777888853388887777543
No 58
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=93.81 E-value=0.86 Score=39.76 Aligned_cols=61 Identities=8% Similarity=0.034 Sum_probs=47.5
Q ss_pred EEEeeEEEEeecCCCCCEEEEEEEEeecC----CceEEEEEEEEECCCCcEEEEEEEEEEEEeCCC
Q 019296 116 VVTRIHIQVQRYSSWGDVVEIDTWVDASG----KNAMRRDWIIRDYRTQDIITRATSTWVIMNRET 177 (343)
Q Consensus 116 Vv~r~~ie~~r~p~~gD~V~I~T~v~~~~----~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD~~t 177 (343)
+-...+++|.+|.+.||+|+++..+.+.. +-.......+.|. +|++++++..+++.-...+
T Consensus 85 v~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~NQ-~Ge~V~~~~~~~~~~~~~~ 149 (166)
T PRK13691 85 VQVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTND-DGELVMEAYTTLMGQQGDN 149 (166)
T ss_pred eeeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEECC-CCCEEEEEEEEEEEecCCC
Confidence 33557888999999999999999988652 2346677788885 8999999998877665443
No 59
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=93.70 E-value=2.3 Score=35.38 Aligned_cols=87 Identities=9% Similarity=-0.049 Sum_probs=58.4
Q ss_pred CcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEe-eEEEEeecCCCCCEEEEEEEEeecCCceEEEEE
Q 019296 74 TATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTR-IHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDW 152 (343)
Q Consensus 74 ~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r-~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f 152 (343)
.+--.-+++++-+++..++... .. .....+....+.. -+++|.++.+.||++++...+..........+.
T Consensus 52 v~Pg~l~iE~~aQ~~~~~~~~~-~~--------~~~~~~~~~~l~~~~~~kF~~~v~pGd~l~i~~~i~~~~~~~~~~~~ 122 (140)
T TIGR01750 52 IMPGVLIVEALAQAGGVLAILS-LG--------GEIGKGKLVYFAGIDKAKFRRPVVPGDQLILHAEFLKKRRKIGKFKG 122 (140)
T ss_pred cChHHHHHHHHHHHHHHHhecc-cc--------ccCCCCcEEEEeecceeEECCccCCCCEEEEEEEEEEccCCEEEEEE
Confidence 3545557777777766543211 00 0011222334445 599999999999999999999877666666777
Q ss_pred EEEECCCCcEEEEEEEEEE
Q 019296 153 IIRDYRTQDIITRATSTWV 171 (343)
Q Consensus 153 ~I~d~~~Ge~ia~a~s~wV 171 (343)
.++. +|+++++|+.+.+
T Consensus 123 ~~~~--~g~~va~~~~~~~ 139 (140)
T TIGR01750 123 EATV--DGKVVAEAEITFA 139 (140)
T ss_pred EEEE--CCEEEEEEEEEEE
Confidence 7754 7999999988764
No 60
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=93.63 E-value=0.85 Score=40.50 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=46.5
Q ss_pred cEEEEEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEEE
Q 019296 113 LIWVVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWVI 172 (343)
Q Consensus 113 ~~wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~ 172 (343)
...+.....++|.+|...||+|.+++.+.+.++........++. +|+++++|..+.+.
T Consensus 124 ~~~~~~i~~irF~kPV~pGD~L~~ea~v~~~~~~~~~v~~~~~v--~g~~V~ege~~~~~ 181 (185)
T PRK04424 124 ELALTGVANIRFKRPVKLGERVVAKAEVVRKKGNKYIVEVKSYV--GDELVFRGKFIMYR 181 (185)
T ss_pred cEEEEEeeeEEEccCCCCCCEEEEEEEEEEccCCEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 34455667999999999999999999999877665555556664 79999999988765
No 61
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=93.59 E-value=0.69 Score=37.30 Aligned_cols=56 Identities=9% Similarity=-0.026 Sum_probs=44.6
Q ss_pred cEEEEEeeEEEEeecCCCCCEEEEEEEEeecCC----ceEEEEEEEEECCCCcEEEEEEEE
Q 019296 113 LIWVVTRIHIQVQRYSSWGDVVEIDTWVDASGK----NAMRRDWIIRDYRTQDIITRATST 169 (343)
Q Consensus 113 ~~wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~----~~~~r~f~I~d~~~Ge~ia~a~s~ 169 (343)
..+++...+++|.+|.+.||+|+++.++..... .......+..+. +|+++..+...
T Consensus 66 ~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~-~g~~v~~g~~~ 125 (127)
T cd03441 66 DGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARNQ-GGEVVLSGEAT 125 (127)
T ss_pred ccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEeC-CCCEEEEEEEE
Confidence 456788999999999999999999999988643 345677777775 78888776653
No 62
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=93.18 E-value=1.2 Score=38.58 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=48.0
Q ss_pred EeeEEEEeecCCCCCEEEEEEEEeecC----CceEEEEEEEEECCCCcEEEEEEEEEEEEeCCCC
Q 019296 118 TRIHIQVQRYSSWGDVVEIDTWVDASG----KNAMRRDWIIRDYRTQDIITRATSTWVIMNRETR 178 (343)
Q Consensus 118 ~r~~ie~~r~p~~gD~V~I~T~v~~~~----~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD~~tr 178 (343)
...+++|.+|.+.||+|+++..+.+.. +-.......+++. +|++++++.++.+.-..+.+
T Consensus 87 ~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~Nq-~Ge~V~~~~~~~~~r~~~~~ 150 (159)
T PRK13692 87 VDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTNE-EGDVVQETYTTLAGRAGEDG 150 (159)
T ss_pred eeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEcC-CCCEEEEEEEEEEEecCCcC
Confidence 347899999999999999999997542 2356777788885 89999999999888766544
No 63
>KOG4366 consensus Predicted thioesterase [General function prediction only]
Probab=92.94 E-value=0.0075 Score=52.99 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=59.9
Q ss_pred cccCcccc-ccchhhHHHHHHhhccHhHHhhCc-------------ceEEEEEEcccCCCCCEEEEEEEeeccccccCCC
Q 019296 230 WSDMDANQ-HVNNVKYIGWILESVPIHVLEDYN-------------MTSMTLEYRRECRQSNLLESLTSTTASVTEDSNN 295 (343)
Q Consensus 230 ~~DiD~ng-HVNN~~Y~~w~~e~~~~~~l~~~~-------------~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~ 295 (343)
.+|+|..- |+||++|++=+ |-+|.+++...+ ..--.+.|++++++=++-.|.+.+.-. .
T Consensus 59 s~dlDtll~HmnNArYfrEl-DfAR~~~~~r~~l~~~lr~~~~~~v~~As~~ryrr~Irpfh~y~v~sRiI~W--D---- 131 (213)
T KOG4366|consen 59 STDLDTLLSHMNNARYFREL-DFARVNFYCRTGLYLMLRSKRGPYVQGASVFRYRREIRPFHPYSVSSRIICW--D---- 131 (213)
T ss_pred cchHHHHHHHhhhhHHHHHh-hHHHHHHHHHHhHHHHHHhcCCCeeechhhhhhhhhcCCCCccceeeEEEEE--c----
Confidence 48999887 99999999998 888888765422 233356799999999999999888653 1
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEE
Q 019296 296 NNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSE 336 (343)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~ 336 (343)
...+...|.+...+||-++|-+.+.
T Consensus 132 ----------------ekaiyle~rFv~~sd~fvcala~~k 156 (213)
T KOG4366|consen 132 ----------------EKAIYLESRFVILSDGFVCALALTK 156 (213)
T ss_pred ----------------hhhhhhhhheeeccCceEeehHHHH
Confidence 2234444555555677777655543
No 64
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=92.75 E-value=0.67 Score=38.48 Aligned_cols=51 Identities=8% Similarity=0.122 Sum_probs=40.6
Q ss_pred eEEEEeecCCCCCEEEEEEEEeecCC------ceEEEEEEEEECCCCcEEEEEEEEEE
Q 019296 120 IHIQVQRYSSWGDVVEIDTWVDASGK------NAMRRDWIIRDYRTQDIITRATSTWV 171 (343)
Q Consensus 120 ~~ie~~r~p~~gD~V~I~T~v~~~~~------~~~~r~f~I~d~~~Ge~ia~a~s~wV 171 (343)
.+++|.+|.+.||+|.++.++.+... -.......+.+. +|++++++.++.+
T Consensus 83 ~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq-~g~~v~~~~~~~l 139 (140)
T cd03446 83 DNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQ-RGEVVQSGEMSLL 139 (140)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEcC-CCCEEEEEEEeee
Confidence 48999999999999999999987632 235566777775 8999999887654
No 65
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=92.73 E-value=0.57 Score=39.03 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=41.3
Q ss_pred eEEEEeecCCCCCEEEEEEEEeecC-------CceEEEEEEEEECCCCcEEEEEEEEEE
Q 019296 120 IHIQVQRYSSWGDVVEIDTWVDASG-------KNAMRRDWIIRDYRTQDIITRATSTWV 171 (343)
Q Consensus 120 ~~ie~~r~p~~gD~V~I~T~v~~~~-------~~~~~r~f~I~d~~~Ge~ia~a~s~wV 171 (343)
..++|.+|.+.||+|.++.++.+.. +-.......+.+. +|++++++..+.+
T Consensus 81 ~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq-~g~~v~~~~~~~~ 138 (140)
T cd03454 81 DELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLNQ-RGEVVLTFEATVL 138 (140)
T ss_pred eeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEcC-CCCEEEEEEehhe
Confidence 4899999999999999999998753 2255677788885 8999999887654
No 66
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=92.60 E-value=0.84 Score=36.95 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=40.1
Q ss_pred ceEEEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEE
Q 019296 262 MTSMTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSE 336 (343)
Q Consensus 262 ~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~ 336 (343)
..+.+++|++|++.||+|.+..++... .. +...+.+...+.++ +|+++++|+.+
T Consensus 72 ~~~~~~~f~~Pv~~gd~l~~~~~v~~~----~~----------------~~~~v~~~~~~~~~-~g~~v~~g~~~ 125 (128)
T cd03449 72 YLSQSLRFLRPVFIGDTVTATVTVTEK----RE----------------DKKRVTLETVCTNQ-NGEVVIEGEAV 125 (128)
T ss_pred EEEEEEEECCCccCCCEEEEEEEEEEE----ec----------------CCCEEEEEEEEEeC-CCCEEEEEEEE
Confidence 456899999999999999999998763 10 01234566666664 78999998865
No 67
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=92.32 E-value=0.7 Score=38.67 Aligned_cols=52 Identities=8% Similarity=-0.013 Sum_probs=41.3
Q ss_pred eEEEEeecCCCCCEEEEEEEEeecCC-------ceEEEEEEEEECCCCcEEEEEEEEEEE
Q 019296 120 IHIQVQRYSSWGDVVEIDTWVDASGK-------NAMRRDWIIRDYRTQDIITRATSTWVI 172 (343)
Q Consensus 120 ~~ie~~r~p~~gD~V~I~T~v~~~~~-------~~~~r~f~I~d~~~Ge~ia~a~s~wV~ 172 (343)
.+++|.+|.+.||+|+++..+.+... ..+.....+.+. +|+++++++.+.++
T Consensus 84 ~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq-~g~~V~~~~~~~~~ 142 (146)
T cd03451 84 DEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQ-DGEPVLSFERTALV 142 (146)
T ss_pred cEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECC-CCCEEEEEEehhEE
Confidence 48999999999999999999987542 255666777764 89999999876543
No 68
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=92.29 E-value=0.99 Score=37.07 Aligned_cols=52 Identities=10% Similarity=0.005 Sum_probs=41.3
Q ss_pred EEeeEEEEeecCCCCCEEEEEEEEeecC----CceEEEEEEEEECCCCcEEEEEEEE
Q 019296 117 VTRIHIQVQRYSSWGDVVEIDTWVDASG----KNAMRRDWIIRDYRTQDIITRATST 169 (343)
Q Consensus 117 v~r~~ie~~r~p~~gD~V~I~T~v~~~~----~~~~~r~f~I~d~~~Ge~ia~a~s~ 169 (343)
+.++.++|.+|.+.||+|+++.++.+.. +-......++.+. +|+++.+++..
T Consensus 70 i~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~nq-~g~~v~~g~a~ 125 (127)
T cd03453 70 VVSFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATDQ-AGGKKVLGRAI 125 (127)
T ss_pred eEEEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEEc-CCCEEEEEEEE
Confidence 4678899999999999999999997642 2356677888885 78888887754
No 69
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=90.86 E-value=2.3 Score=34.83 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=40.9
Q ss_pred CcceEEEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEE
Q 019296 260 YNMTSMTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSE 336 (343)
Q Consensus 260 ~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~ 336 (343)
..+.++++.|++|++.||+|.+..++.+. .+ . .+...+.+...++++ +|.+++.|+.+
T Consensus 68 ~~i~~~~~rf~~Pv~~Gdtl~~~~~v~~~-~~-~----------------~~~~~v~~~~~~~nq-~g~~v~~g~a~ 125 (127)
T cd03453 68 GRVVSFGVRFTKPVPVPDTLTCTGIVVEK-TV-A----------------DGEDALTVTVDATDQ-AGGKKVLGRAI 125 (127)
T ss_pred cceEEEEEEECCcCcCCCEEEEEEEEEEE-Ee-c----------------CCCcEEEEEEEEEEc-CCCEEEEEEEE
Confidence 34678899999999999999999988762 01 1 012235566677775 77888887653
No 70
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=90.49 E-value=5 Score=34.78 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=49.3
Q ss_pred cccccccccCccccccchhhHHHHHHhhccHhHHh---hCcc-eE-EEEEEcccCCCCCEEEEEEEeec
Q 019296 224 SGLAPRWSDMDANQHVNNVKYIGWILESVPIHVLE---DYNM-TS-MTLEYRRECRQSNLLESLTSTTA 287 (343)
Q Consensus 224 ~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~---~~~~-~~-~~i~Y~~e~~~gd~i~v~t~~~~ 287 (343)
....+-++|+..+|-+.--.-+.|+.+.+-....+ ...+ .+ =.|+|++|++.||.|.+++++..
T Consensus 16 ~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a~~~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~ 84 (157)
T COG1607 16 LRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAGGRVVTASVDSVDFKKPVRVGDIVCLYARVVY 84 (157)
T ss_pred EEEEecCCccCcccccccHHHHHHHHHHHHHHHHHHhCCeEEEEEeceEEEccccccCcEEEEEEEEee
Confidence 35668899999999999999999996665433222 2222 22 27899999999999999999987
No 71
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=90.26 E-value=0.95 Score=37.25 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=37.8
Q ss_pred cEEEEEeeEEEEeecCCCCCEEEEEEEEeecCC-------ceEEEEEEEEECCCCcEEEE
Q 019296 113 LIWVVTRIHIQVQRYSSWGDVVEIDTWVDASGK-------NAMRRDWIIRDYRTQDIITR 165 (343)
Q Consensus 113 ~~wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~-------~~~~r~f~I~d~~~Ge~ia~ 165 (343)
...+-...+++|++|++.||+|++++.+..+.. ..+.....++|. +|+++++
T Consensus 73 ~~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~-~Ge~v~t 131 (132)
T PF13452_consen 73 TRLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTDQ-DGELVAT 131 (132)
T ss_dssp GGEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-C-TTEEEEE
T ss_pred hhEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEECC-CCCEEEe
Confidence 345667899999999999999999999987532 234567778885 7998875
No 72
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=90.23 E-value=2.3 Score=34.66 Aligned_cols=55 Identities=9% Similarity=0.067 Sum_probs=40.7
Q ss_pred CcceEEEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEE
Q 019296 260 YNMTSMTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSE 336 (343)
Q Consensus 260 ~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~ 336 (343)
..+.++++.|++|++.||+|.+..++.+. . . .. .+.+...++++ +|..+++++.+
T Consensus 67 ~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~----~-~---------------~~-~v~~~~~~~nq-~G~~v~~g~a~ 121 (123)
T cd03455 67 ARVKSFAFRLGAPLYAGDTLRFGGRVTAK----R-D---------------DE-VVTVELWARNS-EGDHVMAGTAT 121 (123)
T ss_pred ceEEEEEEEeeccccCCCEEEEEEEEEee----c-c---------------Cc-EEEEEEEEEcC-CCCEEEeEEEE
Confidence 35677899999999999999999998762 1 0 01 45566667664 78888888754
No 73
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=88.56 E-value=3.5 Score=34.04 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=39.2
Q ss_pred cceEEEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEE
Q 019296 261 NMTSMTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSE 336 (343)
Q Consensus 261 ~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~ 336 (343)
.+...++.|++|++.||+|.+..++.+. . .....+...++++++|+.++.+..+
T Consensus 69 ~~~~~~~rf~~PV~~gdtl~~~~~v~~~----~------------------~~~~~~~~~~~nq~~g~~V~~g~~~ 122 (126)
T cd03447 69 RVRSFTASFVGMVLPNDELEVRLEHVGM----V------------------DGRKVIKVEARNEETGELVLRGEAE 122 (126)
T ss_pred eEEEEEEEEcccCcCCCEEEEEEEEEEE----e------------------CCeEEEEEEEEECCCCCEEEEEEEE
Confidence 3567899999999999999998888762 1 1123555667776338888888754
No 74
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=88.54 E-value=3.5 Score=41.99 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=49.6
Q ss_pred EEEEEeeEEEEeecCCCCCEEEEEEEEeec--CCceEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCce
Q 019296 114 IWVVTRIHIQVQRYSSWGDVVEIDTWVDAS--GKNAMRRDWIIRDYRTQDIITRATSTWVIMNRETRRL 180 (343)
Q Consensus 114 ~wVv~r~~ie~~r~p~~gD~V~I~T~v~~~--~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD~~trRp 180 (343)
+.+....+++|.+|.+.||+|+++.++.+. ++.......++.+. +|+++.+++.++++-...-.+|
T Consensus 82 ~~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~nq-~G~~V~~g~~~~l~~~~~~~~~ 149 (466)
T PRK08190 82 GTIYLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCTNQ-DGEVVITGTAEVIAPTEKVRRP 149 (466)
T ss_pred ceEEEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEEeC-CCCEEEEEEEEeeccccccccc
Confidence 345567899999999999999999999764 33455666777884 8999999988776554443334
No 75
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=88.42 E-value=1.9 Score=36.20 Aligned_cols=52 Identities=8% Similarity=0.082 Sum_probs=41.1
Q ss_pred eEEEEeecCCCCCEEEEEEEEeecC--C----ceEEEEEEEEECCCCcEEEEEEEEEEE
Q 019296 120 IHIQVQRYSSWGDVVEIDTWVDASG--K----NAMRRDWIIRDYRTQDIITRATSTWVI 172 (343)
Q Consensus 120 ~~ie~~r~p~~gD~V~I~T~v~~~~--~----~~~~r~f~I~d~~~Ge~ia~a~s~wV~ 172 (343)
.+++|.+|.+.||+|+++..+.... . ..+.....+.+. +|++++++.....+
T Consensus 81 ~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq-~g~~V~~~~~~~~~ 138 (142)
T cd03452 81 ENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTNQ-NGELVASYDILTLV 138 (142)
T ss_pred ceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEec-CCCEEEEEEehHee
Confidence 4899999999999999999998763 1 245677778875 79999998865543
No 76
>PRK10293 acyl-CoA esterase; Provisional
Probab=88.29 E-value=10 Score=31.80 Aligned_cols=93 Identities=5% Similarity=-0.070 Sum_probs=64.7
Q ss_pred ccccccccccccCccccccchhhHHHHHHhhcc-HhHHh----hC--cceEEEEEEcccCCCCCEEEEEEEeeccccccC
Q 019296 221 RIRSGLAPRWSDMDANQHVNNVKYIGWILESVP-IHVLE----DY--NMTSMTLEYRRECRQSNLLESLTSTTASVTEDS 293 (343)
Q Consensus 221 ~~~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~-~~~l~----~~--~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~ 293 (343)
..+.+++++...+-..|-++=..+...+ |.+- ..... .. .=.++.++|.+|+..| .|....++... |
T Consensus 35 ~~~~~~~v~~~~~n~~G~lHGGv~~tLa-D~a~~~a~~~~~~~~~~~vTiel~infl~p~~~g-~l~a~a~vv~~----G 108 (136)
T PRK10293 35 TLEATMPVDSRTKQPFGLLHGGASVVLA-ESIGSVAGYLCTEGEQKVVGLEINANHVRSAREG-RVRGVCKPLHL----G 108 (136)
T ss_pred EEEEEEEcCHHHcCCcCcccHHHHHHHH-HHHHHHHHHhcccCCceEEEEEEEeEEecccCCc-eEEEEEEEEec----C
Confidence 3456788888899999999999999999 5432 11111 11 2257889999999988 57777777662 2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcEE-EEEEEecCCCcEEEEEEEEEEe
Q 019296 294 NNNNKNKNSHNHNSSNNRKADLEY-THLLRMQADKAEIIRARSEWQS 339 (343)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~l~~~~dg~~i~~~~t~W~~ 339 (343)
.+..+ .=.++. ++|+++|.++.+|..
T Consensus 109 -------------------r~~~~~~~~v~d-~~g~l~A~~~~t~~i 135 (136)
T PRK10293 109 -------------------SRHQVWQIEIFD-EKGRLCCSSRLTTAI 135 (136)
T ss_pred -------------------CCEEEEEEEEEe-CCCCEEEEEEEEEEE
Confidence 23333 334555 489999999998864
No 77
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=87.06 E-value=3.6 Score=33.99 Aligned_cols=55 Identities=5% Similarity=0.014 Sum_probs=38.0
Q ss_pred EEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEE
Q 019296 266 TLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEW 337 (343)
Q Consensus 266 ~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W 337 (343)
++.|++|++.||+|.+..++... .+ .. +.....+.+...++++ +|++++++++..
T Consensus 84 ~~~f~~pv~~GD~l~~~~~v~~~-~~-~~--------------~~~~~~v~~~~~~~nq-~g~~v~~~~~~~ 138 (140)
T cd03446 84 NLRFLNPVFIGDTIRAEAEVVEK-EE-KD--------------GEDAGVVTRRIEVVNQ-RGEVVQSGEMSL 138 (140)
T ss_pred eEEEcCCCCCCCEEEEEEEEEEe-cc-cC--------------CCCceEEEEEEEEEcC-CCCEEEEEEEee
Confidence 89999999999999999998762 01 10 0011234555566664 899999988764
No 78
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=86.71 E-value=17 Score=30.15 Aligned_cols=88 Identities=18% Similarity=0.155 Sum_probs=56.8
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCC-EEEEEEEEee---cCCce
Q 019296 72 DKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGD-VVEIDTWVDA---SGKNA 147 (343)
Q Consensus 72 ~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD-~V~I~T~v~~---~~~~~ 147 (343)
+..+--.-+++.+-+++..++...+... ..+ ......+...--.++|.++...|| .++++..+.+ .....
T Consensus 47 ~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~ 120 (138)
T PF07977_consen 47 DPVMPGVLLIEAMAQAAGFLAGYSGLAE-GTG-----EARKVPFLAGIRNVKFRGPVYPGDKTLRIEVEIKKIRRREGGM 120 (138)
T ss_dssp S--B-HHHHHHHHHHHHHHHHHHHCCSS-SCC-----CCCEEEEEEEEEEEEE-S-B-TTE-EEEEEEEEEEEEEEETTE
T ss_pred CCCCCeEhHHHHHHHHHHhHhhhccccc-cCC-----CcceEEEeccccEEEECccEeCCCcEEEEEEEEEEeecccCCE
Confidence 3445555577788777777766654321 000 001345566677899999999999 9999999988 56667
Q ss_pred EEEEEEEEECCCCcEEEEEE
Q 019296 148 MRRDWIIRDYRTQDIITRAT 167 (343)
Q Consensus 148 ~~r~f~I~d~~~Ge~ia~a~ 167 (343)
...+..++- +|+.+++|.
T Consensus 121 ~~~~~~~~v--dg~~v~~~~ 138 (138)
T PF07977_consen 121 AIFDGTAYV--DGELVAEAE 138 (138)
T ss_dssp EEEEEEEEE--TTEEEEEEE
T ss_pred EEEEEEEEE--CCEEEEEEC
Confidence 777777876 799998874
No 79
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=86.65 E-value=6.7 Score=30.66 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=46.6
Q ss_pred EEEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEE
Q 019296 116 VVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTW 170 (343)
Q Consensus 116 Vv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~w 170 (343)
.+...++.|.+|+..+.+|++++.+..-||.+..+.-.... +|+++..+...+
T Consensus 40 ~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~Q--~g~~~~~a~~sf 92 (94)
T cd03445 40 VPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAVQ--NGKVIFTATASF 92 (94)
T ss_pred CeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEEE--CCEEEEEEEEEE
Confidence 46789999999999999999999999999999999888876 689888887654
No 80
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=86.52 E-value=4.6 Score=37.02 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=47.6
Q ss_pred EEEEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEEEEe
Q 019296 115 WVVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWVIMN 174 (343)
Q Consensus 115 wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD 174 (343)
..+..+++.|.+|...+ .+++++...+.||.+..+.-+++. +|+++++|...+..-+
T Consensus 34 ~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~q--~~~~~~~a~~~f~~~~ 90 (255)
T PF13622_consen 34 FDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELSQ--DGKVVATATASFGRPE 90 (255)
T ss_dssp SEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEEE--TTEEEEEEEEEEE--T
T ss_pred CceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEEE--CCcCEEEEEEEEccCc
Confidence 67899999999999999 999999999999999999989987 6888888888765554
No 81
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=86.20 E-value=7.6 Score=31.04 Aligned_cols=57 Identities=9% Similarity=0.084 Sum_probs=39.8
Q ss_pred CcceEEEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEE
Q 019296 260 YNMTSMTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARS 335 (343)
Q Consensus 260 ~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t 335 (343)
..+...++.|++|++.||+|++..++... ... . +...+.+.....++ +|..++.|..
T Consensus 68 ~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~----~~~-------------~-~~~~v~~~~~~~n~-~g~~v~~g~~ 124 (127)
T cd03441 68 ANLGSQSVRFLAPVFPGDTLRVEVEVLGK----RPS-------------K-GRGVVTVRTEARNQ-GGEVVLSGEA 124 (127)
T ss_pred ceeEEeEEEEeCCcCCCCEEEEEEEEEEe----ecc-------------C-CCcEEEEEEEEEeC-CCCEEEEEEE
Confidence 45678999999999999999999998872 100 0 11234566666665 6777777654
No 82
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=85.86 E-value=4.9 Score=35.00 Aligned_cols=57 Identities=7% Similarity=0.028 Sum_probs=40.3
Q ss_pred EEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEec
Q 019296 265 MTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQSK 340 (343)
Q Consensus 265 ~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~~ 340 (343)
-+..|++|++.||+|.+...+... .+.. ...-+.+...+.++ +|.+++++..++...
T Consensus 89 q~~~f~rPV~~GDtL~~~~~V~~~-~~~~-----------------~~g~V~~~~~~~NQ-~Ge~V~~~~~~~~~~ 145 (166)
T PRK13691 89 QRFVFHKPVLAGDKLWARMDIHSV-DERF-----------------GADIVVTRNVCTND-DGELVMEAYTTLMGQ 145 (166)
T ss_pred eEEEEeCCcCCCCEEEEEEEEEEE-EEcC-----------------CCcEEEEEEEEECC-CCCEEEEEEEEEEEe
Confidence 477899999999999999998763 1100 01235566666654 899999988877643
No 83
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=85.43 E-value=35 Score=34.81 Aligned_cols=123 Identities=6% Similarity=-0.114 Sum_probs=74.5
Q ss_pred ccCCCCCCcccccccccccCCCeeEEEEEEeeeCCCCC------CCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHH
Q 019296 34 QSQQPDNSPLRACLLGRFVEDRFVYRQTFSIRSYEIGP------DKTATMETLMNLLQETALNHVTSSGLAGNGFGATRE 107 (343)
Q Consensus 34 ~~~~~~~~~~~~~~~g~~~~~~~~f~~~~~Vr~~d~D~------~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~ 107 (343)
.+..+++-++|++..-. + ...+....|...+.=. +..+.-.-.+++|-+++...+.. +.+
T Consensus 330 LPHR~PmLLVDrIl~~e--~--~~i~a~k~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~-~~~--------- 395 (464)
T PRK13188 330 LPHRYPFLLVDKIIELG--D--TKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLN-TVP--------- 395 (464)
T ss_pred CCCCCCeEEEEEEeEEe--C--CEEEEEEEcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhh-ccC---------
Confidence 34467778888887532 2 2233444555444222 23344444577777766544321 111
Q ss_pred HhhCCcEEEEEe-eEEEEeecCCCCCEEEEEEEEee-cCCceEEEEEEEEECCCCcEEEEEEEEEEEE
Q 019296 108 MSLRKLIWVVTR-IHIQVQRYSSWGDVVEIDTWVDA-SGKNAMRRDWIIRDYRTQDIITRATSTWVIM 173 (343)
Q Consensus 108 ~~~~g~~wVv~r-~~ie~~r~p~~gD~V~I~T~v~~-~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~v 173 (343)
...+-.+.+.. -+++|.+|.+.||++++++.+.. ..+........++. +|+++++|....++.
T Consensus 396 -~~~g~lg~LlgI~kvKF~~PV~PGDtL~I~veI~~~~~~giv~f~g~~~v--dGelVaeael~~~v~ 460 (464)
T PRK13188 396 -DPENYSTYFMKIDKVKFRQKVVPGDTLIFKVELLSPIRRGICQMQGKAYV--NGKLVCEAELMAQIV 460 (464)
T ss_pred -CCCCceEEEEeccEEEEcCCCCCCCEEEEEEEEEEEecCCEEEEEEEEEE--CCEEEEEEEEEEEEe
Confidence 01232334445 48999999999999999999876 33344455666663 799999999888765
No 84
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=85.41 E-value=2.8 Score=35.84 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=67.7
Q ss_pred ccccccccccccCccccccchhhHHHHHHhhccHh-HHh-----hCcceEEEEEEcccCCCCCEEEEEEEeeccccccCC
Q 019296 221 RIRSGLAPRWSDMDANQHVNNVKYIGWILESVPIH-VLE-----DYNMTSMTLEYRRECRQSNLLESLTSTTASVTEDSN 294 (343)
Q Consensus 221 ~~~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~-~l~-----~~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~ 294 (343)
.+..+++|....++..+-.++-.-.... |.+... .+. ...-.++.|.|+.++.+||.|++...+... |
T Consensus 38 rv~ce~kV~~~~~N~~k~LHGG~tAtLv-D~i~s~~~~~~~~~~~gvsvdLsvsyL~~AklGe~l~i~a~~vr~----G- 111 (148)
T KOG3328|consen 38 RVSCELKVTPDHLNRFKTLHGGATATLV-DLITSAALLMTSGFKPGVSVDLSVSYLSSAKLGEELEIEATVVRV----G- 111 (148)
T ss_pred eEEEEEEeCHHHcCccccccccchhhHH-HHHhhHHHHhccCCCCceEEEEEhhhccccCCCCeEEEEEEEeec----C-
Confidence 4566899999999999999998877777 444332 221 123477899999999999999999988772 3
Q ss_pred CCCCCCCCCCCCCCCCCCCCcEEE-EEEEecCCCcEEEEEEEE
Q 019296 295 NNNKNKNSHNHNSSNNRKADLEYT-HLLRMQADKAEIIRARSE 336 (343)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~-h~l~~~~dg~~i~~~~t~ 336 (343)
..+.|. -+|++..+|+.++.++-+
T Consensus 112 ------------------k~la~t~v~l~~K~t~kiia~grht 136 (148)
T KOG3328|consen 112 ------------------KTLAFTDVELRRKSTGKIIAKGRHT 136 (148)
T ss_pred ------------------ceEEEEEEEEEEcCCCeEEEecceE
Confidence 234444 367777799999987644
No 85
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.28 E-value=11 Score=31.45 Aligned_cols=95 Identities=2% Similarity=0.009 Sum_probs=64.9
Q ss_pred ccccccccccCccccccchhhHHHHHHhhccHhHHhhCc--c----eEEEEEEcccCCCCCEEEEEEEeeccccccCCCC
Q 019296 223 RSGLAPRWSDMDANQHVNNVKYIGWILESVPIHVLEDYN--M----TSMTLEYRRECRQSNLLESLTSTTASVTEDSNNN 296 (343)
Q Consensus 223 ~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~~~~--~----~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~ 296 (343)
...+.+....+-..|-++=-..+..+..++......... . .++.|+|.++++.|+ +.....+... |
T Consensus 37 ~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~~~g~-v~a~a~v~~~----G--- 108 (141)
T COG2050 37 EATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPVKEGD-VTAEARVLHL----G--- 108 (141)
T ss_pred EEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCCCCCe-EEEEEEEEee----C---
Confidence 445677777777889999999999984333332222221 1 478899999999999 8888888772 2
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEE-EEEecCCCcEEEEEEEEEEecC
Q 019296 297 NKNKNSHNHNSSNNRKADLEYTH-LLRMQADKAEIIRARSEWQSKD 341 (343)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~h-~l~~~~dg~~i~~~~t~W~~~~ 341 (343)
.+..+.. +++..+.++++|+++.+|.-..
T Consensus 109 ----------------~~~~v~~i~v~~~~~~~lva~~~~t~~v~~ 138 (141)
T COG2050 109 ----------------RRVAVVEIEVKNDEGGRLVAKGTGTYAVLR 138 (141)
T ss_pred ----------------CEEEEEEEEEEECCCCeEEEEEEEEEEEec
Confidence 2333433 4444445589999999987654
No 86
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=84.13 E-value=5.4 Score=34.46 Aligned_cols=55 Identities=5% Similarity=0.063 Sum_probs=39.0
Q ss_pred EEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEE
Q 019296 265 MTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQ 338 (343)
Q Consensus 265 ~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~ 338 (343)
.++.|++|++.||+|.+...+... .+ +. ...-+.+...++++ +|.+++.++.+-.
T Consensus 89 q~~~f~~PV~~GDtL~~~~eV~~~-~~-~~----------------~~giv~~~~~v~Nq-~Ge~V~~~~~~~~ 143 (159)
T PRK13692 89 QVLKFEKPIVAGDKLYCDVYVDSV-RE-AH----------------GTQIIVTKNIVTNE-EGDVVQETYTTLA 143 (159)
T ss_pred eEEEEeCCccCCCEEEEEEEEEEE-EE-cC----------------CceEEEEEEEEEcC-CCCEEEEEEEEEE
Confidence 689999999999999999888652 01 10 12245677778775 7888887776543
No 87
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=83.96 E-value=5 Score=33.37 Aligned_cols=58 Identities=9% Similarity=0.020 Sum_probs=38.6
Q ss_pred EEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEE
Q 019296 265 MTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQ 338 (343)
Q Consensus 265 ~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~ 338 (343)
-++.|++|++.||+|++...+... .+ ... ..+..-+.+...+.++ +|+.++.++.+..
T Consensus 84 ~~~~f~~pv~~GDtl~~~~~v~~~-~~-~~~-------------~~~~~~v~~~~~~~nq-~g~~V~~~~~~~~ 141 (146)
T cd03451 84 DEVRFPAPVFHGDTLYAESEVLSK-RE-SKS-------------RPDAGIVTVRTVGYNQ-DGEPVLSFERTAL 141 (146)
T ss_pred cEEEecCCCCCCCEEEEEEEEEEE-ec-CCC-------------CCCCeEEEEEEEEECC-CCCEEEEEEehhE
Confidence 389999999999999999988762 11 000 0011223455556554 8999999887654
No 88
>PRK10254 thioesterase; Provisional
Probab=83.67 E-value=25 Score=29.62 Aligned_cols=93 Identities=3% Similarity=-0.094 Sum_probs=63.3
Q ss_pred ccccccccccccCccccccchhhHHHHHHhhccHhHHh----hCc--ceEEEEEEcccCCCCCEEEEEEEeeccccccCC
Q 019296 221 RIRSGLAPRWSDMDANQHVNNVKYIGWILESVPIHVLE----DYN--MTSMTLEYRRECRQSNLLESLTSTTASVTEDSN 294 (343)
Q Consensus 221 ~~~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~----~~~--~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~ 294 (343)
..+.++.++...+-..|.++=..+...+..++...... ... =.++.++|++|+.-| .|.....+... |
T Consensus 35 ~~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp~~~g-~l~a~a~vi~~----G- 108 (137)
T PRK10254 35 VLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRPVSEG-KVRGVCQPLHL----G- 108 (137)
T ss_pred EEEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEeccCcCC-eEEEEEEEEec----C-
Confidence 34567888899999999999999999993332222211 122 256788999999877 68887777662 2
Q ss_pred CCCCCCCCCCCCCCCCCCCCcE-EEEEEEecCCCcEEEEEEEEEE
Q 019296 295 NNNKNKNSHNHNSSNNRKADLE-YTHLLRMQADKAEIIRARSEWQ 338 (343)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~-~~h~l~~~~dg~~i~~~~t~W~ 338 (343)
.+.. +.=.++. ++|+++|.++.+-.
T Consensus 109 ------------------r~~~v~~~~v~d-~~g~l~a~~~~t~~ 134 (137)
T PRK10254 109 ------------------RQNQSWEIVVFD-EQGRRCCTCRLGTA 134 (137)
T ss_pred ------------------cCEEEEEEEEEc-CCCCEEEEEEEEEE
Confidence 2333 3335554 58999998887644
No 89
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=82.90 E-value=4.6 Score=33.90 Aligned_cols=57 Identities=4% Similarity=-0.022 Sum_probs=38.5
Q ss_pred EEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEE
Q 019296 265 MTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQ 338 (343)
Q Consensus 265 ~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~ 338 (343)
-++.|++|++.||+|.+...+.+. .+ .. ......+.+...+.++ +|+++++++..+-
T Consensus 81 ~~~rf~~PV~~GDtl~~~~~V~~~-~~-~~--------------~~~~~~v~~~~~~~nq-~g~~V~~~~~~~~ 137 (142)
T cd03452 81 ENLRFLEPVYPGDTIQVRLTCKRK-IP-RD--------------GQDYGVVRWDAEVTNQ-NGELVASYDILTL 137 (142)
T ss_pred ceEEECCCCCCCCEEEEEEEEEEE-ee-cC--------------CCCcEEEEEEEEEEec-CCCEEEEEEehHe
Confidence 389999999999999999988762 11 00 0011234555566654 7899998886543
No 90
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=82.14 E-value=8.8 Score=32.18 Aligned_cols=53 Identities=9% Similarity=0.127 Sum_probs=39.5
Q ss_pred EEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEecCC
Q 019296 266 TLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQSKDE 342 (343)
Q Consensus 266 ~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~~~~ 342 (343)
++.|++|++.||+|++..++... . .....+...+. .+|+.+++|+.....+++
T Consensus 95 ~~kF~~pv~pGd~l~i~~~i~~~----~------------------~~~v~~~~~~~--~~g~~v~~~~~~~~~~~~ 147 (147)
T PRK00006 95 KARFKRPVVPGDQLILEVELLKQ----R------------------RGIWKFKGVAT--VDGKLVAEAELMFAIRDK 147 (147)
T ss_pred EEEEccccCCCCEEEEEEEEEEe----e------------------CCEEEEEEEEE--ECCEEEEEEEEEEEEEcC
Confidence 79999999999999999988762 1 12344555554 378999999988766553
No 91
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=81.99 E-value=29 Score=29.00 Aligned_cols=120 Identities=7% Similarity=-0.073 Sum_probs=73.9
Q ss_pred CCCCCcccccccccccCCCeeEEEEEEeeeCC--CC-CCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCc
Q 019296 37 QPDNSPLRACLLGRFVEDRFVYRQTFSIRSYE--IG-PDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKL 113 (343)
Q Consensus 37 ~~~~~~~~~~~~g~~~~~~~~f~~~~~Vr~~d--~D-~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~ 113 (343)
.+++-++|++..-. +.. .+-...|...+ .+ .++.+....++++|-+++..+....... .-....+
T Consensus 10 r~PmllvD~v~~~~--~~~--~~~~~~v~~~~~f~~~~~~~~P~~l~iE~mAQa~a~~~g~~~~~--------~~~~~~~ 77 (138)
T cd01289 10 DGPMCLLDRVISWD--DDS--IHCRATVHPDPLFPLRAHGRLPAWVGIEYMAQAIAAHGGLLARQ--------QGNPPRP 77 (138)
T ss_pred CCCeEEEEEEEEEc--CCE--EEEEEEeCCCCcCccccCCCcchHHHHHHHHHHHHHHHHHHHHh--------cCCCCCc
Confidence 45556666666521 221 22334444332 22 2368888899999999877664211100 0012235
Q ss_pred EEEEEeeEEEEeecCCC-CCEEEEEEEEeecCC-ceEEEEEEEEECCCCcEEEEEEEEE
Q 019296 114 IWVVTRIHIQVQRYSSW-GDVVEIDTWVDASGK-NAMRRDWIIRDYRTQDIITRATSTW 170 (343)
Q Consensus 114 ~wVv~r~~ie~~r~p~~-gD~V~I~T~v~~~~~-~~~~r~f~I~d~~~Ge~ia~a~s~w 170 (343)
+..+.=-.++|.++... ||.+.|+.......+ .....+-.++- +|+++|+|+...
T Consensus 78 g~l~~i~~~~f~~~v~p~Gd~l~i~~~~~~~~~~~~~~~~~~~~v--~~~~va~a~l~~ 134 (138)
T cd01289 78 GFLLGSRKYEAHVDRFDLGSTLLIVVAELLQGDSGLGVFECTIED--QGGVLASGRLNV 134 (138)
T ss_pred EEEEEEEEEEEEcceeCCCCeeEEEeeeeeeCCCcEEEEEEEEEE--CCEEEEEEEEEE
Confidence 55555568999998766 999999998777653 55566667765 689999997653
No 92
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=78.75 E-value=11 Score=33.45 Aligned_cols=53 Identities=4% Similarity=0.009 Sum_probs=36.5
Q ss_pred eEEEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEe
Q 019296 263 TSMTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQS 339 (343)
Q Consensus 263 ~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~ 339 (343)
....+.|++|+.+||+|.+...+... . .....+.=... .+|+++++|......
T Consensus 129 ~i~~irF~kPV~pGD~L~~ea~v~~~----~------------------~~~~~v~~~~~--v~g~~V~ege~~~~~ 181 (185)
T PRK04424 129 GVANIRFKRPVKLGERVVAKAEVVRK----K------------------GNKYIVEVKSY--VGDELVFRGKFIMYR 181 (185)
T ss_pred EeeeEEEccCCCCCCEEEEEEEEEEc----c------------------CCEEEEEEEEE--ECCEEEEEEEEEEEE
Confidence 34599999999999999999998862 1 11122222222 378899999876543
No 93
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=77.70 E-value=13 Score=30.73 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=37.4
Q ss_pred EEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEE
Q 019296 265 MTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEW 337 (343)
Q Consensus 265 ~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W 337 (343)
.++.|++|++.||+|.+..++... .+ ... .....-+.+...+.++ +|++++.+..+.
T Consensus 81 ~~~~f~~pv~~Gd~l~~~~~v~~~-~~-~~~-------------~~~~~~v~~~~~~~nq-~g~~v~~~~~~~ 137 (140)
T cd03454 81 DELRWPRPVRPGDTLSVEVEVLDK-RP-SRS-------------RPDRGIVTLRSETLNQ-RGEVVLTFEATV 137 (140)
T ss_pred eeeEeCCCCCCCCEEEEEEEEEEE-ee-cCC-------------CCCCeEEEEEEEEEcC-CCCEEEEEEehh
Confidence 489999999999999999998773 11 000 0011223455555554 888998887653
No 94
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=77.39 E-value=6.5 Score=32.14 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=21.9
Q ss_pred eEEEEEEcccCCCCCEEEEEEEeecc
Q 019296 263 TSMTLEYRRECRQSNLLESLTSTTAS 288 (343)
Q Consensus 263 ~~~~i~Y~~e~~~gd~i~v~t~~~~~ 288 (343)
.+.++.|++|++.||+|++.+.+..+
T Consensus 78 ~~~~~~~h~Pl~~Gd~l~~~~~v~~v 103 (132)
T PF13452_consen 78 GEQDIEFHRPLRPGDTLTATSRVTDV 103 (132)
T ss_dssp EEEEEEESS--BSSEEEEEEEEEEEE
T ss_pred cCcEEEEeCCCCCCCEEEEEEEEEEE
Confidence 57899999999999999999999884
No 95
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=77.28 E-value=39 Score=27.72 Aligned_cols=88 Identities=8% Similarity=0.143 Sum_probs=58.4
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEEEEEeecCC-----c
Q 019296 72 DKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEIDTWVDASGK-----N 146 (343)
Q Consensus 72 ~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~-----~ 146 (343)
.+|+..--+++-+-++........+ + ...+..+++..+.++|.++..+.-.+.|+..+..... .
T Consensus 40 ~dh~~gmll~Ea~RQa~~~~~h~~~-~----------vp~~~~~~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~~ 108 (132)
T PF03756_consen 40 GDHVPGMLLLEAARQAGIALAHRFY-G----------VPLDHQFVLTSLDFTFSRFAELDVPADLTVRITCRDRRGGRPR 108 (132)
T ss_pred CCccChHHHHHHHHHHHHHhhcccc-C----------CCCCceEEEEEEEEEEccccccCCCEEEEEEEEeccccCCccc
Confidence 4466665555555555544332211 1 1134568999999999999888888888887774332 3
Q ss_pred eEEEEEEEEECCCCcEEEEEEEEEEE
Q 019296 147 AMRRDWIIRDYRTQDIITRATSTWVI 172 (343)
Q Consensus 147 ~~~r~f~I~d~~~Ge~ia~a~s~wV~ 172 (343)
.+.....++. +|+++++++..+-|
T Consensus 109 ~~~~~v~~~q--~g~~~a~~~~~~tc 132 (132)
T PF03756_consen 109 GLRFRVTVSQ--GGRVVATASMTFTC 132 (132)
T ss_pred eEEEEEEEEE--CCEEEEEEEEEEEC
Confidence 5566677776 79999999988754
No 96
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=75.33 E-value=51 Score=28.13 Aligned_cols=93 Identities=11% Similarity=-0.090 Sum_probs=60.8
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhh-CCcEEEEEeeEEEEeecCCCCC-EEEEEEEEeecCC----
Q 019296 72 DKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSL-RKLIWVVTRIHIQVQRYSSWGD-VVEIDTWVDASGK---- 145 (343)
Q Consensus 72 ~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~-~g~~wVv~r~~ie~~r~p~~gD-~V~I~T~v~~~~~---- 145 (343)
+..+--.-.++.|-++...++...+... .... ..+++...--.++|+++...|| +++++..+.+.++
T Consensus 49 ~pvmPG~L~iEamaQ~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l~~e~~i~~~~~~~~~ 121 (150)
T cd01287 49 DPVMPGSLGLEAMIQLLQFYLIWLGLGT-------GVDNPRFQGAPGGPGEWKYRGQITPHNKKVTYEVHIKEVGRDGPR 121 (150)
T ss_pred CCcCchHHHHHHHHHHHHHHHhhccccc-------ccCcccceeEeccceEEEECccCcCCCEEEEEEEEEEEEEccCCc
Confidence 4445555677777777665554433210 0001 1234445556799999999999 8999999998863
Q ss_pred ceEEEEEEEEECCCCcEEEEEEEEEEEE
Q 019296 146 NAMRRDWIIRDYRTQDIITRATSTWVIM 173 (343)
Q Consensus 146 ~~~~r~f~I~d~~~Ge~ia~a~s~wV~v 173 (343)
.....+-.++- +|+++++|+..-|.+
T Consensus 122 ~~~~~~~~~~v--dg~~v~~a~~~~~~~ 147 (150)
T cd01287 122 PYIIADASLWV--DGLRIYEAKDIAVRL 147 (150)
T ss_pred cEEEEEEEEEE--CCEEEEEEEccEEEe
Confidence 55555556665 799999998766554
No 97
>PLN02322 acyl-CoA thioesterase
Probab=75.24 E-value=53 Score=28.28 Aligned_cols=94 Identities=9% Similarity=0.009 Sum_probs=64.2
Q ss_pred cccccccccccCccccccchhhHHHHHHhhc-cHhHH-hh----CcceEEEEEEcccCCCCCEEEEEEEeeccccccCCC
Q 019296 222 IRSGLAPRWSDMDANQHVNNVKYIGWILESV-PIHVL-ED----YNMTSMTLEYRRECRQSNLLESLTSTTASVTEDSNN 295 (343)
Q Consensus 222 ~~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~-~~~~l-~~----~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~ 295 (343)
...++.++...+...|-++=..+...+ |.+ ..... .. ..=.++.|+|++|+..|+.|.....+... |
T Consensus 28 ~~~~m~v~~~~~N~~G~vHGGv~atLa-Dta~g~A~~~~~~~~~~vTiel~infLrpa~~G~~L~Aea~vv~~----G-- 100 (154)
T PLN02322 28 VTGRLPVSPMCCQPFKVLHGGVSALIA-ESLASLGAHMASGFKRVAGIQLSINHLKSADLGDLVFAEATPVST----G-- 100 (154)
T ss_pred EEEEEECCHHHcCCCCCccHHHHHHHH-HHHHHHHHhhccCCCceEEEEEEEEEeccCCCCCEEEEEEEEEec----C--
Confidence 445677888889999999999999999 543 22111 11 12267889999999999999998888762 2
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEE-EEEecC-----CCcEEEEEEEEEEe
Q 019296 296 NNKNKNSHNHNSSNNRKADLEYTH-LLRMQA-----DKAEIIRARSEWQS 339 (343)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~h-~l~~~~-----dg~~i~~~~t~W~~ 339 (343)
.+..+.. .++..+ +|.+++.++.+-.+
T Consensus 101 -----------------r~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~ 133 (154)
T PLN02322 101 -----------------KTIQVWEVKLWKTTDKDKANKILISSSRVTLIC 133 (154)
T ss_pred -----------------CCEEEEEEEEEECCCCcccCCeEEEEEEEEEEE
Confidence 2333333 455421 26889988887744
No 98
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=74.85 E-value=16 Score=29.41 Aligned_cols=51 Identities=8% Similarity=-0.018 Sum_probs=36.8
Q ss_pred EEEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEE
Q 019296 264 SMTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQ 338 (343)
Q Consensus 264 ~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~ 338 (343)
--++.|+++++.||++++..++... + .....+.-.+. .+|+++++|+....
T Consensus 79 ~~~~kf~~pv~pgd~l~i~~~v~~~----~------------------~~~~~~~~~~~--~~g~~v~~~~~~~~ 129 (131)
T cd01288 79 IDKARFRKPVVPGDQLILEVELLKL----R------------------RGIGKFKGKAY--VDGKLVAEAELMFA 129 (131)
T ss_pred ecccEEccccCCCCEEEEEEEEEEe----e------------------CCEEEEEEEEE--ECCEEEEEEEEEEE
Confidence 3588999999999999999998762 1 12334444453 36889999987653
No 99
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=74.36 E-value=17 Score=36.98 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=41.5
Q ss_pred ceEEEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEe
Q 019296 262 MTSMTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQS 339 (343)
Q Consensus 262 ~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~ 339 (343)
....++.|.+|++.||+|++..++... . . ...-+.+...+.++ +|.+++.++.++..
T Consensus 85 ~~~~~~rF~~PV~~GDtl~~~~~V~~~----~-~---------------~~~~v~~~~~~~nq-~G~~V~~g~~~~l~ 141 (466)
T PRK08190 85 YLGQSLRFRRPVRIGDTLTVTVTVREK----D-P---------------EKRIVVLDCRCTNQ-DGEVVITGTAEVIA 141 (466)
T ss_pred EEEEEEEEeCCcCCCCEEEEEEEEEEE----E-C---------------CCCEEEEEEEEEeC-CCCEEEEEEEEeec
Confidence 356799999999999999999988762 1 0 12234565666664 88899988877654
No 100
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=72.60 E-value=31 Score=26.06 Aligned_cols=53 Identities=9% Similarity=0.043 Sum_probs=37.8
Q ss_pred CcceEEEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEE-EEEecCCCcEEEEEEEE
Q 019296 260 YNMTSMTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTH-LLRMQADKAEIIRARSE 336 (343)
Q Consensus 260 ~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~l~~~~dg~~i~~~~t~ 336 (343)
....++.+.|.++...++.+....++... + .++.+.+ .++ +.+|++++.+.-+
T Consensus 43 ~~t~~~~i~F~~~~~~~~~~~~~~~~~~~----g-------------------~~~~~~~~~i~-~~~G~lva~~~~~ 96 (99)
T cd00556 43 FASLDHHIYFHRPGDADEWLLYEVESLRD----G-------------------RSRALRRGRAY-QRDGKLVASATQS 96 (99)
T ss_pred eeeeEEEEEEcCCCCCCccEEEEEEeccc----C-------------------CCceEEEEEEE-CCCCcEEEEEEEe
Confidence 34678899999999999999988877662 2 2233443 344 4479999988754
No 101
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=72.16 E-value=50 Score=28.26 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=45.7
Q ss_pred cEEEEEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEEEEe
Q 019296 113 LIWVVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWVIMN 174 (343)
Q Consensus 113 ~~wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD 174 (343)
+...+.=-+.+|+++...||.+.++......++..+........ .+|+++++|+...+.++
T Consensus 85 ~~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~~~~~~~~~~~a~-Vdg~~v~~a~~~~~~~~ 145 (147)
T COG0764 85 LGYFLGIDNAKFKRPVLPGDQLELEVKLLKSRRLGIGKAKGVAT-VDGKVVAEAELLFAGVE 145 (147)
T ss_pred EEEEEEecceeecCccCCCCEEEEEEEEEEecccceEEEEEEEE-ECCEEEEEEEEEEEEee
Confidence 56666667899999999999999999998877343333223333 27999999998887765
No 102
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=68.83 E-value=35 Score=26.99 Aligned_cols=56 Identities=9% Similarity=-0.069 Sum_probs=45.8
Q ss_pred EEEEEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEE
Q 019296 114 IWVVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTW 170 (343)
Q Consensus 114 ~wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~w 170 (343)
.-.-..+.|.|..++...|=+..+.+....+.-+..-.=.|+++ +|+++|......
T Consensus 47 ~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~~~-~G~LvAs~~Q~~ 102 (104)
T cd03444 47 ASASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIFTR-DGELVASVAQEG 102 (104)
T ss_pred ceEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEECC-CCCEEEEEEEee
Confidence 34566788999999998899999999888877777777789996 899999887654
No 103
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=68.33 E-value=22 Score=32.95 Aligned_cols=54 Identities=11% Similarity=0.042 Sum_probs=47.6
Q ss_pred EEEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEE
Q 019296 116 VVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWV 171 (343)
Q Consensus 116 Vv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV 171 (343)
.+..+++.|.+++..+..|++++....-||.+..|.-.++. +|++++++...+.
T Consensus 45 ~~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~Q--~g~~~~~a~asf~ 98 (271)
T TIGR00189 45 IPHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAVQ--HGKTIFTLQASFQ 98 (271)
T ss_pred CcceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEEE--CCEEEEEEEEEcc
Confidence 45689999999999999999999999999999999888876 6899988877655
No 104
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=67.16 E-value=35 Score=27.91 Aligned_cols=48 Identities=8% Similarity=0.143 Sum_probs=32.4
Q ss_pred EEEEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEE
Q 019296 115 WVVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRAT 167 (343)
Q Consensus 115 wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~ 167 (343)
..+....++|.+|...||+|.++.|.. ++ ......... ++|+++..+.
T Consensus 70 ~~~~~~~~rF~~PV~~gDtl~~~~~~~--~~-~v~~~~~~~--~~g~~v~~g~ 117 (122)
T cd03448 70 ARFKAIKVRFSSPVFPGETLRTEMWKE--GN-RVIFQTKVV--ERDVVVLSNG 117 (122)
T ss_pred ceeEEEEEEEcCCccCCCEEEEEEEEe--CC-EEEEEEEEc--cCCcEEEECC
Confidence 346677999999999999999999854 33 333333332 3566655543
No 105
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=66.94 E-value=30 Score=28.65 Aligned_cols=95 Identities=15% Similarity=0.151 Sum_probs=52.2
Q ss_pred ccccccccccccCccccccchhhHHHHHHhhccHhHH-hhC------cceEEEEEEcccCCCCCEEEEEEEeeccccccC
Q 019296 221 RIRSGLAPRWSDMDANQHVNNVKYIGWILESVPIHVL-EDY------NMTSMTLEYRRECRQSNLLESLTSTTASVTEDS 293 (343)
Q Consensus 221 ~~~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l-~~~------~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~ 293 (343)
.+...+..++.-....|-++-..-+..+ |.+..-.+ ... .+++++|+|++++. ..|...+.+.+ ++-
T Consensus 30 ~~~v~l~~~~~~~N~~gt~h~gAl~~la-E~~~g~~~~~~l~~~~~~~~k~~~i~f~kpa~--g~v~a~~~~~~---e~~ 103 (132)
T PF14539_consen 30 RVVVRLPLRPRNRNHVGTIHAGALFTLA-EPAYGLLLMSNLGDKYRVWDKSAEIDFLKPAR--GDVTATAELTE---EQI 103 (132)
T ss_dssp EEEEEE-S-CCGB-TTSSB-HHHHHHHH-HCHHHHHHHHHS-TTEEEEEEEEEEEE-S-----S-EEEEEE-TC---CHC
T ss_pred EEEEEEcCCccccCcCcchHHHHHHHHH-HHHHHHHHHHhCCCcEEEEEEeeEEEEEeccC--CcEEEEEEcCH---HHh
Confidence 3455677888888888888888888877 54433222 111 36899999999964 33455555544 101
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEE
Q 019296 294 NNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQ 338 (343)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~ 338 (343)
..+..+.+.-.+++ .+|.++++++.+|.
T Consensus 104 ----------------~~~~~~~~~v~i~D-~~G~~Va~~~~t~~ 131 (132)
T PF14539_consen 104 ----------------GERGELTVPVEITD-ADGEVVAEATITWY 131 (132)
T ss_dssp ----------------CHEEEEEEEEEEEE-TTC-EEEEEEEEEE
T ss_pred ----------------CCCcEEEEEEEEEE-CCCCEEEEEEEEEE
Confidence 01223444445555 58999999999994
No 106
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=66.59 E-value=35 Score=29.29 Aligned_cols=59 Identities=8% Similarity=-0.023 Sum_probs=41.9
Q ss_pred EEEEEeeEEEEeecCCCCCEEEEEEEEeecC--C--ceEEEEEEEEECCCCcEEEEEEEEEEEE
Q 019296 114 IWVVTRIHIQVQRYSSWGDVVEIDTWVDASG--K--NAMRRDWIIRDYRTQDIITRATSTWVIM 173 (343)
Q Consensus 114 ~wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~--~--~~~~r~f~I~d~~~Ge~ia~a~s~wV~v 173 (343)
+-.+.-..++|.+|.+.||+|..++++.+.. + -........++. .|+....+...+++.
T Consensus 93 ~~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~~~-~g~~v~~~~~~~~~~ 155 (159)
T COG2030 93 GANLGGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETVNQ-EGELVLTLEATVLVL 155 (159)
T ss_pred eeeccccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEEcc-CCcEEEEEEEeEeEe
Confidence 4456677899999999999999999998643 1 122333445553 788888887776654
No 107
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=65.43 E-value=40 Score=27.83 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=35.2
Q ss_pred EEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEE
Q 019296 265 MTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEW 337 (343)
Q Consensus 265 ~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W 337 (343)
-++.|+++++.||++++..++... . ..-..+.-.+. .+|+++|.|+...
T Consensus 90 ~~~kF~~~v~pGd~l~i~~~i~~~----~------------------~~~~~~~~~~~--~~g~~va~~~~~~ 138 (140)
T TIGR01750 90 DKAKFRRPVVPGDQLILHAEFLKK----R------------------RKIGKFKGEAT--VDGKVVAEAEITF 138 (140)
T ss_pred ceeEECCccCCCCEEEEEEEEEEc----c------------------CCEEEEEEEEE--ECCEEEEEEEEEE
Confidence 389999999999999999888752 1 11233444443 3789999998764
No 108
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=63.01 E-value=14 Score=29.94 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=25.8
Q ss_pred EEEEEeeEEEEeecCCCCCEEEEEEEEeecC
Q 019296 114 IWVVTRIHIQVQRYSSWGDVVEIDTWVDASG 144 (343)
Q Consensus 114 ~wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~ 144 (343)
...+.+..++|.+|.+.||+|.++.++.+..
T Consensus 75 ~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~ 105 (122)
T PF01575_consen 75 PARLGRFNVRFRAPVFPGDTLTAEVEVTEKR 105 (122)
T ss_dssp CEEEEEEEEEESS--BTTEEEEEEEEEEEEE
T ss_pred ceEEEEEEEEEeccccCCCEEEEEEEEEEEE
Confidence 5678899999999999999999999998743
No 109
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=62.06 E-value=76 Score=26.94 Aligned_cols=29 Identities=7% Similarity=-0.209 Sum_probs=24.1
Q ss_pred EEEEeeEEEEeecCCCCCEEEEEEEEeec
Q 019296 115 WVVTRIHIQVQRYSSWGDVVEIDTWVDAS 143 (343)
Q Consensus 115 wVv~r~~ie~~r~p~~gD~V~I~T~v~~~ 143 (343)
+.+...+++|.+|.+.||+|+++..+.+.
T Consensus 85 ~~~g~~~~rF~~PV~~GDtl~~~~~V~~~ 113 (149)
T cd03450 85 VNYGLDKVRFPAPVPVGSRVRGRFTLLSV 113 (149)
T ss_pred EEeeccEEEeCcceeCCcEEEEEEEEEEE
Confidence 34445689999999999999999998764
No 110
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=58.14 E-value=1e+02 Score=25.16 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=46.9
Q ss_pred HHhhccHhHHh------------hCcceEEEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCc
Q 019296 248 ILESVPIHVLE------------DYNMTSMTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADL 315 (343)
Q Consensus 248 ~~e~~~~~~l~------------~~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (343)
+.|++|+..+. ...+.++++.|.+.+.++-++.+...+... . .. .......
T Consensus 48 l~Ea~RQa~~~~~h~~~~vp~~~~~~~~~l~~~f~~~~e~~~P~~~~~~~~~~--~-~~--------------~~~~~~~ 110 (132)
T PF03756_consen 48 LLEAARQAGIALAHRFYGVPLDHQFVLTSLDFTFSRFAELDVPADLTVRITCR--D-RR--------------GGRPRGL 110 (132)
T ss_pred HHHHHHHHHHHhhccccCCCCCceEEEEEEEEEEccccccCCCEEEEEEEEec--c-cc--------------CCccceE
Confidence 44777775432 135789999999998888788887776651 0 10 0012223
Q ss_pred EEEEEEEecCCCcEEEEEEEEEEe
Q 019296 316 EYTHLLRMQADKAEIIRARSEWQS 339 (343)
Q Consensus 316 ~~~h~l~~~~dg~~i~~~~t~W~~ 339 (343)
.+.-.+. .+|+.++++...|.|
T Consensus 111 ~~~v~~~--q~g~~~a~~~~~~tc 132 (132)
T PF03756_consen 111 RFRVTVS--QGGRVVATASMTFTC 132 (132)
T ss_pred EEEEEEE--ECCEEEEEEEEEEEC
Confidence 3333343 489999999999987
No 111
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=57.88 E-value=1.2e+02 Score=27.50 Aligned_cols=57 Identities=9% Similarity=0.124 Sum_probs=38.4
Q ss_pred CcceEEEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEe
Q 019296 260 YNMTSMTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQS 339 (343)
Q Consensus 260 ~~~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~ 339 (343)
..+.++++.|.+++..| .+++.+..... | .++...+.-.. ++|++++++...+..
T Consensus 34 ~~~~s~~~~fl~p~~~~-~~~~~v~~~r~----G-------------------r~~~~~~v~~~-q~~~~~~~a~~~f~~ 88 (255)
T PF13622_consen 34 FDPHSLHVYFLRPVPPG-PVEYRVEVLRD----G-------------------RSFSTRQVELS-QDGKVVATATASFGR 88 (255)
T ss_dssp SEEEEEEEEESS--BSC-EEEEEEEEEEE----S-------------------SSEEEEEEEEE-ETTEEEEEEEEEEE-
T ss_pred CceEEEEeEeccccccC-CEEEEEEEeeC----C-------------------CcEEEEEEEEE-ECCcCEEEEEEEEcc
Confidence 46999999999999999 99998887762 3 23444432223 378899999888766
Q ss_pred cC
Q 019296 340 KD 341 (343)
Q Consensus 340 ~~ 341 (343)
.+
T Consensus 89 ~~ 90 (255)
T PF13622_consen 89 PE 90 (255)
T ss_dssp -T
T ss_pred Cc
Confidence 43
No 112
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=55.61 E-value=64 Score=26.33 Aligned_cols=25 Identities=4% Similarity=0.109 Sum_probs=21.8
Q ss_pred cceEEEEEEcccCCCCCEEEEEEEe
Q 019296 261 NMTSMTLEYRRECRQSNLLESLTST 285 (343)
Q Consensus 261 ~~~~~~i~Y~~e~~~gd~i~v~t~~ 285 (343)
.+...++.|++|++.||+|.+..+.
T Consensus 71 ~~~~~~~rF~~PV~~gDtl~~~~~~ 95 (122)
T cd03448 71 RFKAIKVRFSSPVFPGETLRTEMWK 95 (122)
T ss_pred eeEEEEEEEcCCccCCCEEEEEEEE
Confidence 3577899999999999999998774
No 113
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=53.80 E-value=60 Score=30.68 Aligned_cols=55 Identities=15% Similarity=0.030 Sum_probs=48.4
Q ss_pred EEEEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEE
Q 019296 115 WVVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWV 171 (343)
Q Consensus 115 wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV 171 (343)
.++..+++-|.+|...+..|+.++....-||++..|.-..+. +|+++.++...+-
T Consensus 55 ~~~hSlh~~Fl~pg~~~~pi~y~Ve~lRdGRSfstr~V~a~Q--~g~~if~~~~sF~ 109 (286)
T PRK10526 55 RLVHSFHSYFLRPGDSQKPIIYDVETLRDGNSFSARRVAAIQ--NGKPIFYMTASFQ 109 (286)
T ss_pred CCceEEEEEcCCCCCCCCCEEEEEEEEeCCCceEeEEEEEEE--CCEEEEEEEEEec
Confidence 478899999999999999999999999999999999888886 6899888876654
No 114
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=53.46 E-value=61 Score=31.94 Aligned_cols=62 Identities=10% Similarity=0.123 Sum_probs=51.9
Q ss_pred cccccccCccccccchhhHHHHHHhhccHhHHh----hCcceEEEEEEcccCCCCCEEEEEEEeec
Q 019296 226 LAPRWSDMDANQHVNNVKYIGWILESVPIHVLE----DYNMTSMTLEYRRECRQSNLLESLTSTTA 287 (343)
Q Consensus 226 ~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~l~----~~~~~~~~i~Y~~e~~~gd~i~v~t~~~~ 287 (343)
+.|.+.-++.+|-+.|.++...+.+..-..+.. ...+..+.+.|++|+...+.++++..+..
T Consensus 337 ~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~~~~niiIE~i~iyflk~vqid~~l~I~prIl~ 402 (432)
T COG4109 337 VEVEPQMINSLGTISNGVFTELLTEVVQRVLRKKKKRNIIIENITIYFLKPVQIDSVLEIYPRILE 402 (432)
T ss_pred EEechhhccccccchHHHHHHHHHHHHHHHHHHhcCCceEEEeeeeeeecceecccEEEEeeeeec
Confidence 569999999999999999999997665433322 23578899999999999999999999877
No 115
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=51.43 E-value=65 Score=30.04 Aligned_cols=148 Identities=14% Similarity=0.132 Sum_probs=91.9
Q ss_pred CCcEEEEEeeEEEEeecCCCCCEEEEEEEEeec--------CCceEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceeC
Q 019296 111 RKLIWVVTRIHIQVQRYSSWGDVVEIDTWVDAS--------GKNAMRRDWIIRDYRTQDIITRATSTWVIMNRETRRLSK 182 (343)
Q Consensus 111 ~g~~wVv~r~~ie~~r~p~~gD~V~I~T~v~~~--------~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~vD~~trRp~r 182 (343)
..-.| ....+.|..|.+.|++.+..-.+..+ ...+.++...+.. .|++|.+=.-+.|.-+...-+
T Consensus 76 ~RRmW--a~G~l~f~~pl~lgqe~t~~e~Iq~i~ek~g~~g~ltfvT~~h~~~~--~~~l~l~Err~ivY~n~~~s~--- 148 (273)
T COG3777 76 RRRMW--AGGELVFHLPLRLGQEYTCHETIQYIEEKHGRSGELTFVTVPHVYSS--PGQLCLFERRTIVYTNAPASK--- 148 (273)
T ss_pred hhhhh--ccceEEEecceecCceeehhHHHHHHHHhcccccceeEEeccceecc--CcceeeeeeeeEEEecCCCCC---
Confidence 34456 35678999999999998876665532 1234455555554 688888888888877754222
Q ss_pred CCHHHHHhhcccccccccccccccccCCcc-CCCcccccccccccccccccCcccccc--chhhHHHHHHhhccH-----
Q 019296 183 IPEQVRQEVLPFYLNTFAIDKEKTDVGKID-KLTDQTAGRIRSGLAPRWSDMDANQHV--NNVKYIGWILESVPI----- 254 (343)
Q Consensus 183 iP~ev~e~l~~~~~~~~~~~~~~~~~~ki~-~l~~~~~~~~~~~~~vr~~DiD~ngHV--NN~~Y~~w~~e~~~~----- 254 (343)
|.-.. ..+.| ..++- .+.. .+ ..-+|||-+-.|||. +|.-|..+. |.-|.
T Consensus 149 -p~~~~---------s~~~p-----~~~w~~~~tp--tp----vllfrYsaltfN~HrIHyD~~Yat~v-EgYpgLVvhG 206 (273)
T COG3777 149 -PAVKM---------SVAEP-----NGKWLKNFTP--TP----VLLFRYSALTFNGHRIHYDAPYATYV-EGYPGLVVHG 206 (273)
T ss_pred -ccccC---------CCCCC-----CCchhhcCCC--Cc----hheeehhhhccCceeeeccCcceeec-cCCCCceecc
Confidence 21100 00111 11121 1111 01 245899999999997 678888887 54432
Q ss_pred --------hHHh---hCcceEEEEEEcccCCCCCEEEEEEEeec
Q 019296 255 --------HVLE---DYNMTSMTLEYRRECRQSNLLESLTSTTA 287 (343)
Q Consensus 255 --------~~l~---~~~~~~~~i~Y~~e~~~gd~i~v~t~~~~ 287 (343)
+++. ...+++++..=++|++.++++++.-....
T Consensus 207 Pl~atlll~~~~~~~pq~~~Rf~fR~L~p~f~~~~lti~~~l~~ 250 (273)
T COG3777 207 PLIATLLLRAFQPFLPQPIRRFRFRNLSPAFPNETLTICGSLSG 250 (273)
T ss_pred hHHHHHHHHHhhhhccccchheeccccccccCCCCeeEeeEecC
Confidence 1111 23478999999999999999999766554
No 116
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=49.41 E-value=41 Score=35.92 Aligned_cols=49 Identities=8% Similarity=0.100 Sum_probs=38.9
Q ss_pred EEEEeecCCCCCEEEEEEEEeecCC------ceEEEEEEEEECCCCcEEEEEEEEE
Q 019296 121 HIQVQRYSSWGDVVEIDTWVDASGK------NAMRRDWIIRDYRTQDIITRATSTW 170 (343)
Q Consensus 121 ~ie~~r~p~~gD~V~I~T~v~~~~~------~~~~r~f~I~d~~~Ge~ia~a~s~w 170 (343)
.++|.+|.+.||+|+++..+..... ........+.+. +|+++.++....
T Consensus 617 ~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq-~G~~V~~~~~~~ 671 (675)
T PRK11563 617 NLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTNQ-DGELVATYDILT 671 (675)
T ss_pred eEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEEC-CCCEEEEEEEHH
Confidence 7999999999999999999987631 245677778874 799888877643
No 117
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=49.33 E-value=68 Score=27.43 Aligned_cols=59 Identities=5% Similarity=0.012 Sum_probs=40.0
Q ss_pred ceEEEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEe
Q 019296 262 MTSMTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQS 339 (343)
Q Consensus 262 ~~~~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~ 339 (343)
+..-++.|.+|++.||+|...+++.+. ... .+...+...+....+ .|.++..+...|..
T Consensus 96 ~g~~~vRF~~PV~~Gdtl~~~~~v~~~--~~~----------------~~~G~v~~~~~~~~~-~g~~v~~~~~~~~~ 154 (159)
T COG2030 96 LGGDEVRFVKPVFPGDTLRARVEVLDK--RPS----------------KSRGLVTLRLETVNQ-EGELVLTLEATVLV 154 (159)
T ss_pred ccccceEecCCCCCCCEEEEEEEEEEe--eec----------------CCceEEEEEEEEEcc-CCcEEEEEEEeEeE
Confidence 455689999999999999999988761 001 001234556666654 77788777776654
No 118
>PLN02864 enoyl-CoA hydratase
Probab=48.50 E-value=87 Score=30.09 Aligned_cols=52 Identities=10% Similarity=0.090 Sum_probs=36.1
Q ss_pred EEEEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEE
Q 019296 115 WVVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWV 171 (343)
Q Consensus 115 wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV 171 (343)
..+.+.+++|.+|...||+|.++.|.. ++ ...++... + ++|+++..+.....
T Consensus 253 ~~~~~~~~rF~~PV~pGdtl~~~~~~~--~~-~v~~~~~~-~-~~g~~vl~G~a~~~ 304 (310)
T PLN02864 253 TAVKTISGRFLLHVYPGETLVTEMWLE--GL-RVIYQTKV-K-ERNKAVLSGYVDLR 304 (310)
T ss_pred ceEEEEEEEEcCCccCCCEEEEEEEeC--CC-EEEEEEEE-e-cCCeEEEEEEEEEe
Confidence 356788999999999999999999864 22 23333333 2 46788777765543
No 119
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=47.86 E-value=54 Score=35.03 Aligned_cols=50 Identities=6% Similarity=-0.003 Sum_probs=38.7
Q ss_pred eEEEEeecCCCCCEEEEEEEEeecC--C---c-eEEEEEEEEECCCCcEEEEEEEEE
Q 019296 120 IHIQVQRYSSWGDVVEIDTWVDASG--K---N-AMRRDWIIRDYRTQDIITRATSTW 170 (343)
Q Consensus 120 ~~ie~~r~p~~gD~V~I~T~v~~~~--~---~-~~~r~f~I~d~~~Ge~ia~a~s~w 170 (343)
.+++|.+|.+.||+|+++..+.+.. + . .+.....+.+. +|+++.++....
T Consensus 604 ~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~nq-~G~~Vl~~~~~~ 659 (663)
T TIGR02278 604 ENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVNQ-NGEPVATYDVLT 659 (663)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEcC-CCCEEEEEEEHH
Confidence 4899999999999999999998652 1 1 45666777774 789888877644
No 120
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=47.49 E-value=27 Score=28.25 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=23.2
Q ss_pred CcceEEEEEEcccCCCCCEEEEEEEeec
Q 019296 260 YNMTSMTLEYRRECRQSNLLESLTSTTA 287 (343)
Q Consensus 260 ~~~~~~~i~Y~~e~~~gd~i~v~t~~~~ 287 (343)
..+.++++.|++|++.||+|.+..++..
T Consensus 76 ~~~~~~~~rF~~PV~~gdtl~~~~~v~~ 103 (122)
T PF01575_consen 76 ARLGRFNVRFRAPVFPGDTLTAEVEVTE 103 (122)
T ss_dssp EEEEEEEEEESS--BTTEEEEEEEEEEE
T ss_pred eEEEEEEEEEeccccCCCEEEEEEEEEE
Confidence 3578899999999999999999988876
No 121
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=46.52 E-value=1.7e+02 Score=24.40 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=34.9
Q ss_pred EeeEEEEeecCCCC-C----EEEEEEEEeec--CCceEEEEEEEEECCCCcEEEEEEEE
Q 019296 118 TRIHIQVQRYSSWG-D----VVEIDTWVDAS--GKNAMRRDWIIRDYRTQDIITRATST 169 (343)
Q Consensus 118 ~r~~ie~~r~p~~g-D----~V~I~T~v~~~--~~~~~~r~f~I~d~~~Ge~ia~a~s~ 169 (343)
.+..++|.+|.+.| | +++++..+.+. ++........+.+. +++++++|..+
T Consensus 81 ~~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~ 138 (142)
T PRK13693 81 TEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATTG-GKKIFGRAIAS 138 (142)
T ss_pred EEEEEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEEEEEEEC-CcEEEEEEEEE
Confidence 47899999999964 4 88888888865 33355666666653 45556665544
No 122
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=46.33 E-value=1.1e+02 Score=24.36 Aligned_cols=47 Identities=9% Similarity=0.027 Sum_probs=33.9
Q ss_pred EEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEE
Q 019296 265 MTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARS 335 (343)
Q Consensus 265 ~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t 335 (343)
-++.|+++++.||++++..++... . .....+.-.+.. +|+++++++.
T Consensus 81 ~~~kf~~~v~pgd~l~i~~~i~~~----~------------------~~~~~~~~~~~~--~g~~v~~~~~ 127 (131)
T cd00493 81 RKVKFRGPVLPGDTLTLEVELLKV----R------------------RGLGKFDGRAYV--DGKLVAEAEL 127 (131)
T ss_pred ceeEECCCcCCCCEEEEEEEEEEe----e------------------CCEEEEEEEEEE--CCEEEEEEEE
Confidence 489999999999999999888762 1 112344445543 5889998873
No 123
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=45.47 E-value=1.3e+02 Score=27.72 Aligned_cols=55 Identities=9% Similarity=-0.120 Sum_probs=42.2
Q ss_pred EEEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEE
Q 019296 116 VVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWV 171 (343)
Q Consensus 116 Vv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV 171 (343)
.-..+.|.|.++...++-+..+++....+.-...-.=.|+|. +|+++|.+...-+
T Consensus 215 aSldhtv~fh~~~~~~~W~l~~~~s~~~~~Grg~~~~~l~d~-~G~lvAs~~Qe~l 269 (271)
T TIGR00189 215 ASLDHSIWFHRPFRADDWLLYKCSSPSASGSRGLVEGKIFTR-DGVLIASTVQEGL 269 (271)
T ss_pred EeeeeeEEEeCCCCCCeeEEEEEEeccccCCceEEEEEEECC-CCCEEEEEEeeee
Confidence 466788899998788999999998886654444445688996 8999998876543
No 124
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=45.41 E-value=1.3e+02 Score=25.69 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=36.1
Q ss_pred EEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEecC
Q 019296 265 MTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQSKD 341 (343)
Q Consensus 265 ~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~~~ 341 (343)
-++.|++++.+||.+.+...+... . ...+....-... -||+++|.|......+.
T Consensus 92 d~~kF~~~V~PGd~l~l~~~~~~~----~------------------~~~~~~~~~~a~-Vdg~~v~~a~~~~~~~~ 145 (147)
T COG0764 92 DNAKFKRPVLPGDQLELEVKLLKS----R------------------RLGIGKAKGVAT-VDGKVVAEAELLFAGVE 145 (147)
T ss_pred cceeecCccCCCCEEEEEEEEEEe----c------------------ccceEEEEEEEE-ECCEEEEEEEEEEEEee
Confidence 378999999999999998887661 1 011222222222 38999999988776543
No 125
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=44.98 E-value=2.9e+02 Score=26.45 Aligned_cols=103 Identities=14% Similarity=0.048 Sum_probs=65.1
Q ss_pred EEEeeeCCCCCCCCcCHHHHHHHHHHHHHHHHH--hcCCCCCCCCchHHHhhCCcEEEEEeeEEEEeecCCCCCEEEEEE
Q 019296 61 TFSIRSYEIGPDKTATMETLMNLLQETALNHVT--SSGLAGNGFGATREMSLRKLIWVVTRIHIQVQRYSSWGDVVEIDT 138 (343)
Q Consensus 61 ~~~Vr~~d~D~~G~v~~~~yl~~lqeaa~~~~~--~lG~~~~g~~~~~~~~~~g~~wVv~r~~ie~~r~p~~gD~V~I~T 138 (343)
.+-||...-=++-..-+..++-|+.+--.-... ..|++ +...++.-+-..+.|-|.||.+.+|-+.-.+
T Consensus 179 ~vWira~~~~pdd~~~~~~lLay~SD~~ll~tal~~Hg~~---------~~~~~~~~aSLDHs~wFhrp~~~ddWlLy~~ 249 (289)
T COG1946 179 QVWIRARGELPDDPRLHQALLAYLSDFTLLDTALQPHGLG---------FLTPGIQVASLDHSMWFHRPFRLDDWLLYAQ 249 (289)
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHhccchhhhhhhccCCCc---------cccCcceEeeccceEEEeccccCCCEEEEEe
Confidence 345555555555566666677777765432211 11211 1234566677788999999999999998888
Q ss_pred EEeecCCceEEEEEEEEECCCCcEEEEEEEEEEEE
Q 019296 139 WVDASGKNAMRRDWIIRDYRTQDIITRATSTWVIM 173 (343)
Q Consensus 139 ~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~v 173 (343)
........+..-.=.|++. +|+++|...-..++.
T Consensus 250 ~sp~A~~~rgl~~G~lf~r-~G~LiA~~~QEG~~r 283 (289)
T COG1946 250 ESPSASGGRGLVRGQLFDR-DGQLIASVVQEGLIR 283 (289)
T ss_pred eCCcccCCcceeeeEEEcC-CCCEEEEEeeeEEEe
Confidence 7776543333333356674 899999887766654
No 126
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=41.16 E-value=68 Score=34.26 Aligned_cols=54 Identities=7% Similarity=0.052 Sum_probs=37.5
Q ss_pred EEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEE
Q 019296 266 TLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSE 336 (343)
Q Consensus 266 ~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~ 336 (343)
++.|++|++.||+|++...+.+. .+ .. ..+...+.+...++++ +|+.+..++..
T Consensus 617 ~~rF~~PV~~GDtl~~~~~V~~~-~~-~~--------------~~~~~~v~~~~~~~nq-~G~~V~~~~~~ 670 (675)
T PRK11563 617 NLRFLTPVKPGDTIQVRLTCKRK-TP-RR--------------QAPYGVVRWDVEVTNQ-DGELVATYDIL 670 (675)
T ss_pred eEEEcCCCCCCCEEEEEEEEEEE-Ee-cC--------------CCCceEEEEEEEEEEC-CCCEEEEEEEH
Confidence 79999999999999999998763 11 00 0011235666677764 88988888754
No 127
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=41.04 E-value=82 Score=26.72 Aligned_cols=23 Identities=0% Similarity=-0.036 Sum_probs=21.1
Q ss_pred EEEEEcccCCCCCEEEEEEEeec
Q 019296 265 MTLEYRRECRQSNLLESLTSTTA 287 (343)
Q Consensus 265 ~~i~Y~~e~~~gd~i~v~t~~~~ 287 (343)
-++.|++|++.||+|.+...+.+
T Consensus 90 ~~~rF~~PV~~GDtl~~~~~V~~ 112 (149)
T cd03450 90 DKVRFPAPVPVGSRVRGRFTLLS 112 (149)
T ss_pred cEEEeCcceeCCcEEEEEEEEEE
Confidence 47999999999999999998877
No 128
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=40.20 E-value=81 Score=33.68 Aligned_cols=55 Identities=7% Similarity=0.070 Sum_probs=36.9
Q ss_pred EEEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEE
Q 019296 265 MTLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSE 336 (343)
Q Consensus 265 ~~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~ 336 (343)
-++.|++|++.||+|++...+.+. .+ .. ......+++...++++ +|+.++.++-.
T Consensus 604 ~~~rF~~PV~~GDtl~~~~~V~e~-~~-~~--------------~~~~g~v~~~~~v~nq-~G~~Vl~~~~~ 658 (663)
T TIGR02278 604 ENLRFLEPVGPGDTIQVRLTVKRK-TP-RD--------------EKTYGVVEWAAEVVNQ-NGEPVATYDVL 658 (663)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEE-Ee-cC--------------CCCceEEEEEEEEEcC-CCCEEEEEEEH
Confidence 389999999999999999988762 01 00 0011134566666664 78888887653
No 129
>PF11456 DUF3019: Protein of unknown function (DUF3019); InterPro: IPR021559 This is a bacterial family of uncharacterised proteins.
Probab=39.06 E-value=84 Score=25.10 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=27.1
Q ss_pred EEEEEEECCCCcEEEEEEEEEEEEeCCCCceeCCC
Q 019296 150 RDWIIRDYRTQDIITRATSTWVIMNRETRRLSKIP 184 (343)
Q Consensus 150 r~f~I~d~~~Ge~ia~a~s~wV~vD~~trRp~riP 184 (343)
..|.++|.+++.++|.+......+..++||-.|.|
T Consensus 65 ~~f~L~~~~~~~~la~~~v~V~~~~~k~Rrr~r~p 99 (102)
T PF11456_consen 65 TQFSLRDSDTGQPLAQVKVKVTWVSPKVRRRRRNP 99 (102)
T ss_pred eEEEEEeCCCCcEEEEEEEEEEEeccCcCCccCCC
Confidence 45788888889999988887777767777766654
No 130
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=37.52 E-value=2.6e+02 Score=23.79 Aligned_cols=90 Identities=13% Similarity=0.082 Sum_probs=55.6
Q ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhC--CcEEEEEeeEEEEeecCCCCCEEEEEEEEe----
Q 019296 68 EIGPDKTATMETLMNLLQETALNHVTSSGLAGNGFGATREMSLR--KLIWVVTRIHIQVQRYSSWGDVVEIDTWVD---- 141 (343)
Q Consensus 68 d~D~~G~v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~--g~~wVv~r~~ie~~r~p~~gD~V~I~T~v~---- 141 (343)
.++..|.++-..+...+--+.+..+.- .+.+. +-..||.+.+|+|.+|..- | ++..+.+.
T Consensus 39 N~N~~~T~FgGSl~slatLaGW~lv~l------------~l~e~~~~~~IVi~~~~i~Y~~Pv~~-d-~~A~~~~~~~~~ 104 (144)
T PF09500_consen 39 NINHHGTMFGGSLYSLATLAGWGLVWL------------QLKEAGLNGDIVIADSNIRYLKPVTG-D-FTARCSLPEPED 104 (144)
T ss_dssp GB-TTSSB-HHHHHHHHHHHHHHHHHH------------HHHHHT---EEEEEEEEEEE-S---S----EEEEE------
T ss_pred CcCCCCCcchHHHHHHHHHHHHHHHHH------------HHHHhCCCCcEEEEeCceEEcCCCCC-C-cEEEEeccccch
Confidence 566678888888888888887765432 11222 2467899999999999963 3 44444433
Q ss_pred ---------ecCCceEEEEEEEEECCCCcEEEEEEEEEEEE
Q 019296 142 ---------ASGKNAMRRDWIIRDYRTQDIITRATSTWVIM 173 (343)
Q Consensus 142 ---------~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~v 173 (343)
.-+|.++...-.|++ +|+.+++-+..+|.+
T Consensus 105 ~~~~~~~l~~~grari~l~~~i~~--~~~~~a~f~G~yv~l 143 (144)
T PF09500_consen 105 WERFLQTLARGGRARITLEVEIYS--GGELAAEFTGRYVAL 143 (144)
T ss_dssp -S---GGGGCTS-EEEEEEEEEEE--TTEEEEEEEEEEEEE
T ss_pred hHHHHHHHHcCCcEEEEEEEEEEE--CCEEEEEEEEEEEEE
Confidence 235667778888887 688999999888875
No 131
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=36.35 E-value=2.1e+02 Score=24.02 Aligned_cols=53 Identities=6% Similarity=-0.111 Sum_probs=34.1
Q ss_pred EEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEE
Q 019296 117 VTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATST 169 (343)
Q Consensus 117 v~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~ 169 (343)
-....|=|.+|.+..|-+.-.+.............=.+++..+|+++|++...
T Consensus 77 SlDHs~wFHrpfr~ddWlLY~~~sp~A~~~Rgl~~G~~f~~q~G~Lvas~~QE 129 (131)
T PF02551_consen 77 SLDHSMWFHRPFRADDWLLYAIESPSASGGRGLVRGRFFDTQDGELVASVVQE 129 (131)
T ss_dssp EEEEEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCEEECTTEEEEEEEEE
T ss_pred ecceeEEEcCCCCCCCCEEEEEEcCccccCcccccCceEecCCCCEEEEEecC
Confidence 66788899999999999888887665444433344456622489999987654
No 132
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=36.33 E-value=1.3e+02 Score=24.79 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=17.6
Q ss_pred EEEEEEcccCCCCC-EEEEEEEeec
Q 019296 264 SMTLEYRRECRQSN-LLESLTSTTA 287 (343)
Q Consensus 264 ~~~i~Y~~e~~~gd-~i~v~t~~~~ 287 (343)
--.+.|++++..|| .+++...+..
T Consensus 88 ~~~~kF~~~v~Pg~~~l~~~v~i~~ 112 (138)
T PF07977_consen 88 IRNVKFRGPVYPGDKTLRIEVEIKK 112 (138)
T ss_dssp EEEEEE-S-B-TTE-EEEEEEEEEE
T ss_pred ccEEEECccEeCCCcEEEEEEEEEE
Confidence 34899999999999 8888877766
No 133
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=32.48 E-value=2.2e+02 Score=28.11 Aligned_cols=208 Identities=13% Similarity=0.066 Sum_probs=111.8
Q ss_pred CCCcCHH-HHHHHHHHHHHHHHHhcCCCCCCCCchHHHhhCCcEEEEEee-EEEEeecCCCCC-EEEEEEEEeecCCceE
Q 019296 72 DKTATME-TLMNLLQETALNHVTSSGLAGNGFGATREMSLRKLIWVVTRI-HIQVQRYSSWGD-VVEIDTWVDASGKNAM 148 (343)
Q Consensus 72 ~G~v~~~-~yl~~lqeaa~~~~~~lG~~~~g~~~~~~~~~~g~~wVv~r~-~ie~~r~p~~gD-~V~I~T~v~~~~~~~~ 148 (343)
.|..... .+..|+++...-.....-.. + ......-+..|.+.. .|+|.+++.-|+ .+.+.--++..++.++
T Consensus 23 s~~~~~~prigk~lE~ld~~a~~~hc~~-~-----~~~~~~p~~~VtAsV~~i~f~~~~~~~~~d~i~~a~Vt~a~~sSM 96 (357)
T KOG2763|consen 23 SGNTFVGPRIGKILEDLDALAVYRHCSE-A-----EEGATLPRTIVTASVDRIDFEKPSEVGQVDIIIVAKVTWAGKSSM 96 (357)
T ss_pred ccceecchHHHHHHHHhhhhhheeeccc-c-----cccCccceEEEEeeEEEEEeeccccccceeEEEEEEEEeccccce
Confidence 3333333 89999999863222100000 0 001111145555553 688999888884 4555567777888888
Q ss_pred EEEEEEEE--CC--CCcEEEEEEEEEEEEeCCCCceeCCCHHHHH------hhccccc---ccccccc------------
Q 019296 149 RRDWIIRD--YR--TQDIITRATSTWVIMNRETRRLSKIPEQVRQ------EVLPFYL---NTFAIDK------------ 203 (343)
Q Consensus 149 ~r~f~I~d--~~--~Ge~ia~a~s~wV~vD~~trRp~riP~ev~e------~l~~~~~---~~~~~~~------------ 203 (343)
...-.+.. .. ...++-.|..++|.-|..++ ++++++-.-+ .+...-. -+...+.
T Consensus 97 Ev~i~V~q~~~~~~~~~~~~kA~f~fVard~~~~-~~~l~~l~p~te~e~~~~~~aeer~k~R~~~~~~~~~~~~~~~l~ 175 (357)
T KOG2763|consen 97 EVSIYVMQEDLATGEKSLVLKATFTFVARDATNG-KAPLNGLTPETEDEKVLYREAEERNKVRKVSEDISSCKQLEEELA 175 (357)
T ss_pred EEEEEEEEehhccchhhheeeeEEEEEEecCCCC-ccccCCccCCCCccceehhhHHHhhhhhccccccchhHHHHHHhh
Confidence 76555554 22 24578899999999998887 7766531100 0000000 0000000
Q ss_pred cccccCCccCC--Cc--cccc--ccccccccccccCccccccchhhHHHHHHhhccHhH---HhhC-cceEE-EEEEccc
Q 019296 204 EKTDVGKIDKL--TD--QTAG--RIRSGLAPRWSDMDANQHVNNVKYIGWILESVPIHV---LEDY-NMTSM-TLEYRRE 272 (343)
Q Consensus 204 ~~~~~~ki~~l--~~--~~~~--~~~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~~---l~~~-~~~~~-~i~Y~~e 272 (343)
+...+..+..+ +. -++. ......-+.+.+-..+|-+.-..-++|++|.+-... .... .++++ .|+|.+|
T Consensus 176 ~~~~~~d~~~lv~~~~~~~m~dT~v~sseI~~P~~~N~~G~iFGGflMrka~ElA~~~A~~f~~~~p~~rsVD~i~F~~p 255 (357)
T KOG2763|consen 176 ERWVPGDMVALVLSPKMVWMKDTKVSSSEICQPEHRNIHGTIFGGFLMRKALELAEITAKLFCKGRPATRSVDDIEFQKP 255 (357)
T ss_pred cccccCCceeeecCCcceEeeccceeEEEeecCcccCccCceehHHHHHHHHHHHHHHHHHHcCCCceEEEechhhccCc
Confidence 00011111111 00 0000 112233466777888888888888999988764322 1122 23444 5799999
Q ss_pred CCCCCEEEEEEEee
Q 019296 273 CRQSNLLESLTSTT 286 (343)
Q Consensus 273 ~~~gd~i~v~t~~~ 286 (343)
+.-|+.|.....+.
T Consensus 256 VdvG~~L~f~s~V~ 269 (357)
T KOG2763|consen 256 VDVGCVLTFSSFVT 269 (357)
T ss_pred ceeeeEEEEeeEEE
Confidence 99999998776654
No 134
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=30.18 E-value=2.3e+02 Score=28.98 Aligned_cols=52 Identities=10% Similarity=-0.003 Sum_probs=37.3
Q ss_pred EEEEcccCCCCCEEEEEEEeeccccccCCCCCCCCCCCCCCCCCCCCCCcEEEEEEEecCCCcEEEEEEEEEEec
Q 019296 266 TLEYRRECRQSNLLESLTSTTASVTEDSNNNNKNKNSHNHNSSNNRKADLEYTHLLRMQADKAEIIRARSEWQSK 340 (343)
Q Consensus 266 ~i~Y~~e~~~gd~i~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~l~~~~dg~~i~~~~t~W~~~ 340 (343)
.+.|+++++.||++++...+... . .+.-..|.-.+. . +|+++|.|+......
T Consensus 409 kvKF~~PV~PGDtL~I~veI~~~----~-----------------~~giv~f~g~~~-v-dGelVaeael~~~v~ 460 (464)
T PRK13188 409 KVKFRQKVVPGDTLIFKVELLSP----I-----------------RRGICQMQGKAY-V-NGKLVCEAELMAQIV 460 (464)
T ss_pred EEEEcCCCCCCCEEEEEEEEEEE----e-----------------cCCEEEEEEEEE-E-CCEEEEEEEEEEEEe
Confidence 88999999999999999887651 1 011235555555 3 789999998876543
No 135
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=29.83 E-value=3.2e+02 Score=22.58 Aligned_cols=59 Identities=7% Similarity=-0.026 Sum_probs=36.9
Q ss_pred ccccccccccCccccccchhhHHHHHHhhccHh----HHh------hCcceEEEEEEcccCCCCCEEEEEEEe
Q 019296 223 RSGLAPRWSDMDANQHVNNVKYIGWILESVPIH----VLE------DYNMTSMTLEYRRECRQSNLLESLTST 285 (343)
Q Consensus 223 ~~~~~vr~~DiD~ngHVNN~~Y~~w~~e~~~~~----~l~------~~~~~~~~i~Y~~e~~~gd~i~v~t~~ 285 (343)
...+.++.. +...|=++=..+...+ |.+-.. .+. .....+++|+|++|+.- + +...+..
T Consensus 25 ~v~~pl~~n-~N~~G~~hGG~l~tla-d~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl~P~~~-~-~~a~~~~ 93 (138)
T TIGR02447 25 RLSAPLAAN-INHHGTMFGGSLYTLA-TLSGWGLLWLRLQELGIDGDIVIADSHIRYLAPVTG-D-PVANCEA 93 (138)
T ss_pred EEEeECCCC-cCCCCceehhHHHHHH-HHHHHHHHHHHHHHhCCCCcEEEEEeeeEEcCCcCC-C-eEEEEEc
Confidence 345556664 7777888888888887 443211 111 23467899999999975 3 4444444
No 136
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=29.63 E-value=4.8e+02 Score=24.51 Aligned_cols=59 Identities=3% Similarity=-0.118 Sum_probs=44.4
Q ss_pred cEEEEEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEEE
Q 019296 113 LIWVVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWVI 172 (343)
Q Consensus 113 ~~wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV~ 172 (343)
..-.-..+.|.|+++.+.+|=+..+++....+.-+..-.=.|++. +|+++|.+.-..++
T Consensus 224 ~~~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a~~gr~~~~g~i~~~-~G~LvAs~~Qegl~ 282 (286)
T PRK10526 224 MQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQ-DGVLVASTVQEGVM 282 (286)
T ss_pred ceEEeeeEeEEEeCCCCCCceEEEEEECCcccCCceEEEEEEECC-CCCEEEEEEeeEEE
Confidence 334567788999999999999999998886543333333478886 89999999877654
No 137
>PLN02868 acyl-CoA thioesterase family protein
Probab=29.44 E-value=1.8e+02 Score=28.98 Aligned_cols=55 Identities=11% Similarity=-0.022 Sum_probs=46.0
Q ss_pred EEEEeeEEEEeecCCCCCEEEEEEEEeecCCceEEEEEEEEECCCCcEEEEEEEEEE
Q 019296 115 WVVTRIHIQVQRYSSWGDVVEIDTWVDASGKNAMRRDWIIRDYRTQDIITRATSTWV 171 (343)
Q Consensus 115 wVv~r~~ie~~r~p~~gD~V~I~T~v~~~~~~~~~r~f~I~d~~~Ge~ia~a~s~wV 171 (343)
..+..+++.|.++...+..|++++....-||++..|.-..+. +|++++++...+.
T Consensus 181 ~~~~s~~~~Fl~~~~~~~pv~~~V~~lr~Grs~~~r~v~~~Q--~g~~~~~~~~sf~ 235 (413)
T PLN02868 181 KLVHSLHAYFLLVGDINLPIIYQVERIRDGHNFATRRVDAIQ--KGKVIFTLFASFQ 235 (413)
T ss_pred CCceEeeeeecCCCCCCCCEEEEEEEEcCCCceEeeEEEEEE--CCeeEEEEeeccc
Confidence 357789999999998888999999999999999999888876 6888887765543
No 138
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=28.15 E-value=4e+02 Score=23.18 Aligned_cols=119 Identities=8% Similarity=-0.252 Sum_probs=69.4
Q ss_pred CCCCCcccccccccccCCC----e-eEEEEEEeeeCCCCCCCC------cCHHHHHHHHHHHHHHHHHhcCCCCCCCCch
Q 019296 37 QPDNSPLRACLLGRFVEDR----F-VYRQTFSIRSYEIGPDKT------ATMETLMNLLQETALNHVTSSGLAGNGFGAT 105 (343)
Q Consensus 37 ~~~~~~~~~~~~g~~~~~~----~-~f~~~~~Vr~~d~D~~G~------v~~~~yl~~lqeaa~~~~~~lG~~~~g~~~~ 105 (343)
.+++-+.|++..- .+++ . .-+-...|...+-=..|| +--.-.++.|-++...++...+.
T Consensus 31 ~~PmllIDrV~~~--~~~gg~~~~g~i~a~k~v~~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~-------- 100 (172)
T PRK05174 31 APPMLMMDRITEI--SETGGEFGKGYIVAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGG-------- 100 (172)
T ss_pred CCCeEEEEEEEEE--cCCCCcccceEEEEEEECCCCCccccCCCCCCCcCchHHHHHHHHHHHHHHHhcccc--------
Confidence 5667777777532 2221 0 122334444443212233 44455667777776655432211
Q ss_pred HHHhhCCcEEEEEeeEEEEeecCCCCCE-EEEEEEEeecC---CceEEEEEEEEECCCCcEEEEEEEEEEE
Q 019296 106 REMSLRKLIWVVTRIHIQVQRYSSWGDV-VEIDTWVDASG---KNAMRRDWIIRDYRTQDIITRATSTWVI 172 (343)
Q Consensus 106 ~~~~~~g~~wVv~r~~ie~~r~p~~gD~-V~I~T~v~~~~---~~~~~r~f~I~d~~~Ge~ia~a~s~wV~ 172 (343)
.+.+..+.--+.+|+++...+|+ +++++.+.+.. +.....+-.++- +|+++++|+-.-+-
T Consensus 101 -----~~~g~l~g~~~~kfr~~v~Pgd~~l~l~v~i~~~~~~~~~~~~~~~~i~v--~g~~va~a~~~~l~ 164 (172)
T PRK05174 101 -----PGKGRALGVGEVKFTGQVLPTAKKVTYEIDIKRVINRKLVMGIADGRVLV--DGEEIYTAKDLKVG 164 (172)
T ss_pred -----cCceEEeeccEEEECccCcCCCEEEEEEEEEEEEecCCCCEEEEEEEEEE--CCEEEEEEEeeEEE
Confidence 12234455567999999999998 89999888852 344556666664 69999888654443
No 139
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=24.12 E-value=3.6e+02 Score=22.29 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=18.8
Q ss_pred EEEEcccCCC-CCEEEEEEEeec
Q 019296 266 TLEYRRECRQ-SNLLESLTSTTA 287 (343)
Q Consensus 266 ~i~Y~~e~~~-gd~i~v~t~~~~ 287 (343)
.++|++++.. ||.+.+......
T Consensus 85 ~~~f~~~v~p~Gd~l~i~~~~~~ 107 (138)
T cd01289 85 KYEAHVDRFDLGSTLLIVVAELL 107 (138)
T ss_pred EEEEEcceeCCCCeeEEEeeeee
Confidence 8899999877 999999877655
No 140
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=23.84 E-value=3.4e+02 Score=20.84 Aligned_cols=53 Identities=13% Similarity=0.026 Sum_probs=35.5
Q ss_pred cccccchhhHHHHHHhhccHhHHhhCcceEEEEEEcccCCCCCEEEEEEEeec
Q 019296 235 ANQHVNNVKYIGWILESVPIHVLEDYNMTSMTLEYRRECRQSNLLESLTSTTA 287 (343)
Q Consensus 235 ~ngHVNN~~Y~~w~~e~~~~~~l~~~~~~~~~i~Y~~e~~~gd~i~v~t~~~~ 287 (343)
..+++|=-.-+.-.+.++....-....+.++.+.|.+++..+.++++......
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~~~~~~~~s~~~~Fl~p~~~~~pv~~~v~~lr 66 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTVPDDRVPHSLHSYFLRPGDPDQPIEYEVERLR 66 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhCCCCCCeEEEEEEecCCCCCCCCEEEEEEEEE
Confidence 34455544444444444333222235689999999999999999999888776
Done!