Query 019299
Match_columns 343
No_of_seqs 309 out of 1848
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 13:56:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 100.0 1.3E-37 4.6E-42 298.1 21.9 221 89-342 6-229 (320)
2 3v5u_A Uncharacterized membran 99.6 1.5E-15 5.1E-20 145.2 11.3 137 89-250 165-305 (320)
3 2kdc_A Diacylglycerol kinase; 22.8 2.2E+02 0.0076 22.4 6.6 40 79-118 43-83 (121)
4 3rko_M NADH-quinone oxidoreduc 12.8 9.1E+02 0.031 23.3 10.5 29 277-305 467-495 (509)
5 3lae_A UPF0053 protein HI0107; 12.8 89 0.0031 22.4 1.8 24 111-134 20-51 (81)
6 3llb_A Uncharacterized protein 12.7 93 0.0032 22.4 1.9 16 119-134 36-51 (83)
7 3arc_L Photosystem II reaction 11.3 3.1E+02 0.011 17.0 3.7 27 180-206 6-32 (37)
8 3mk7_C Cytochrome C oxidase, C 9.9 9E+02 0.031 21.5 8.4 7 227-233 6-12 (311)
9 2rk5_A Putative hemolysin; str 9.8 1.3E+02 0.0045 21.8 1.8 16 119-134 35-50 (87)
10 2pli_A Uncharacterized protein 8.2 1.7E+02 0.0057 21.4 1.9 24 111-134 29-60 (91)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=100.00 E-value=1.3e-37 Score=298.06 Aligned_cols=221 Identities=19% Similarity=0.152 Sum_probs=183.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cchhhhHHhhhc-chhHHHHHHHHhhCCCcceehhhhhhHHHHHHHHH
Q 019299 89 PWVFALSLLGLTPLAERVSFLTEQIAFYTG--PTVGGLLNATCG-NATELIIAIFALYGRKIDVVKYSLLGSILSNLLLV 165 (343)
Q Consensus 89 ~~~F~l~~l~ii~la~~l~~~~e~lA~~~G--~~vggll~a~~g-slpElivsi~Al~~g~~~iv~g~ilGSil~Nlllv 165 (343)
...|+++++.++++++++++++|++|+++| |.+.|++++++| |+||+++++.|.++|++|+++||++|||++|++++
T Consensus 6 ~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nillv 85 (320)
T 3v5u_A 6 VGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLV 85 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHHHH
Confidence 456889999999999999999999999999 899999999998 89999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccccchhhhcchHHHHHHHHHHHHHHHHHHHhhhcccchhhhccccchhHhHHHHHHHHHHHHHHH
Q 019299 166 LGTSLFCGGIANLRKEQKYDRKQADVNSLLLLLALLCHMLPLLFKYAAASSDITAKATLQLSRASSIVMLIGYFAYLVFQ 245 (343)
Q Consensus 166 lG~~~l~gg~~~~~~~~~~~~~~a~~~~~ll~la~l~l~lP~~~~~~~~~~~~~~~~~~~lsr~~siiLl~~Y~~yl~f~ 245 (343)
+|++.++++.+ .++.+. ++. .+++++.+.+ ++ +. .+. ++|++|++|++.|+.|++|+
T Consensus 86 lG~~~li~p~~---v~~~~~-~d~----~~~l~~~~~l-~~--~~-----------~~g-is~~~g~~Ll~~Y~~yl~~~ 142 (320)
T 3v5u_A 86 LGLSAIISPII---VDKNLQ-KNI----LVYLLFVIFA-AV--IG-----------IDG-FSWIDGVVLLILFIIYLRWT 142 (320)
T ss_dssp HHHHHHHSCBC---CCHHHH-HHH----HHHHHHHHHH-HH--HT-----------TTC-BCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccc---ccHHHH-HHH----HHHHHHHHHH-HH--HH-----------Hcc-cHHHHHHHHHHHHHHHHHHH
Confidence 99999998764 233332 221 2222222221 11 11 223 89999999999999999999
Q ss_pred HHhhhhhccccCCCCCCCCCCccCCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCchhHHHHHHHhhhhhH
Q 019299 246 LWTHREFFEAQEDSEDDDDVTEETPVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAA 325 (343)
Q Consensus 246 l~th~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~~~~i~~~s~~lV~si~~i~~~~gis~~fiGlillpi~tnlp 325 (343)
+++|++ +++ + ++++++.+.|+.+.+++++++++.++++++|++++.+++.+|+|+.++|++++|++||+|
T Consensus 143 ~~~~~~-----~~~-~----~~~~~~~~~~~~~~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslP 212 (320)
T 3v5u_A 143 VKNGSA-----EIE-E----NNDKNNPSVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLP 212 (320)
T ss_dssp HHHTBC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHH
T ss_pred HHhccc-----ccc-c----ccccccccHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccH
Confidence 999864 111 1 112234567888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcccC
Q 019299 326 EHAGAIIFAFKNKLVSN 342 (343)
Q Consensus 326 E~~~AI~aA~kgk~dla 342 (343)
|+++++.++|||+.|+|
T Consensus 213 E~~~sv~aa~~g~~~la 229 (320)
T 3v5u_A 213 ELMVSLAAAKRNLGGMV 229 (320)
T ss_dssp HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCCCcHH
Confidence 99999999999999975
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.62 E-value=1.5e-15 Score=145.22 Aligned_cols=137 Identities=19% Similarity=0.193 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cchhhhHHhhhc-chhHHHHHHHHhhCCCcceehhhhhhHHHHHHHHH
Q 019299 89 PWVFALSLLGLTPLAERVSFLTEQIAFYTG--PTVGGLLNATCG-NATELIIAIFALYGRKIDVVKYSLLGSILSNLLLV 165 (343)
Q Consensus 89 ~~~F~l~~l~ii~la~~l~~~~e~lA~~~G--~~vggll~a~~g-slpElivsi~Al~~g~~~iv~g~ilGSil~Nlllv 165 (343)
...++.+++.++.++++++++++++++.+| +.+.|+++.++| |+||+++++.|.++|+.|++.||++|||++|++++
T Consensus 165 ~~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslPE~~~sv~aa~~g~~~laig~iiGS~ifn~~~v 244 (320)
T 3v5u_A 165 LVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADIGGA 244 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccHHHHHHHHHHHcCCCcHHHHHHHhHHHHHHHHH
Confidence 456778899999999999999999999999 888899887777 99999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccccchhhhcchHHHHHHHHHHHHHHHHHHHhhhcccchhhhccccchhHhHHHHHHHHHH-HHHH
Q 019299 166 LGTSLFCGGIANLRKEQKYDRKQADVNSLLLLLALLCHMLPLLFKYAAASSDITAKATLQLSRASSIVMLIGYFA-YLVF 244 (343)
Q Consensus 166 lG~~~l~gg~~~~~~~~~~~~~~a~~~~~ll~la~l~l~lP~~~~~~~~~~~~~~~~~~~lsr~~siiLl~~Y~~-yl~f 244 (343)
+|++.++.+.. .+ .++.. .++..+++.. . .+ .+++++|++|++++..|++ |+++
T Consensus 245 ~g~~~li~p~~---~~----~~d~~---~~l~~~~ll~-~--~~------------~~~~i~~~eG~~ll~~Y~~~y~~~ 299 (320)
T 3v5u_A 245 LAVGSLFMHLP---AE----NVQMA---VLVIMSLLLY-L--FA------------KYSKIGRWQGILFLALYIIAIASL 299 (320)
T ss_dssp HHHHHHHSCBC---CC----HHHHH---HHHHHHHHHH-H--HH------------HHSCBSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhcccc---ch----HHHHH---HHHHHHHHHH-H--HH------------hCCcCcHHHHHHHHHHHHHHHHHH
Confidence 99999987542 21 22211 2222222221 1 11 3467899999999999999 9998
Q ss_pred HHHhhh
Q 019299 245 QLWTHR 250 (343)
Q Consensus 245 ~l~th~ 250 (343)
.++.++
T Consensus 300 ~~~~~~ 305 (320)
T 3v5u_A 300 RMGGGS 305 (320)
T ss_dssp CSSCC-
T ss_pred HHHhhc
Confidence 776543
No 3
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=22.83 E-value=2.2e+02 Score=22.41 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=30.2
Q ss_pred HHHHhhcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 019299 79 IIGQCFGFAE-PWVFALSLLGLTPLAERVSFLTEQIAFYTG 118 (343)
Q Consensus 79 i~~~~~~~~~-~~~F~l~~l~ii~la~~l~~~~e~lA~~~G 118 (343)
++.-+++.+. -|.+.+..++++..+|.+-.+.|.+.++.+
T Consensus 43 ~~~~~l~~s~~e~~~li~~i~lVl~~EllNTAIE~vvD~v~ 83 (121)
T 2kdc_A 43 VIACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIG 83 (121)
T ss_dssp HHHHHCCCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHTTCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333455443 566677777899999999999999999888
No 4
>3rko_M NADH-quinone oxidoreductase subunit M; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=12.85 E-value=9.1e+02 Score=23.35 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 019299 277 GFAWLVGMTAIIALLSEFVVGTIEDASNS 305 (343)
Q Consensus 277 ~i~~Lv~~~~~i~~~s~~lV~si~~i~~~ 305 (343)
.+..+++.++++.+..+.+.+-++..+++
T Consensus 467 ~~~~l~~~~~~lG~~p~~~~~~~~~~~~~ 495 (509)
T 3rko_M 467 MILLLVVLLVLLGFYPQPILDTSHSAIGN 495 (509)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44556666666777777877777776664
No 5
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=12.81 E-value=89 Score=22.41 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=18.6
Q ss_pred HHHHHHhC--------cchhhhHHhhhcchhH
Q 019299 111 EQIAFYTG--------PTVGGLLNATCGNATE 134 (343)
Q Consensus 111 e~lA~~~G--------~~vggll~a~~gslpE 134 (343)
+++.+.+| +++||+++.-+|..|+
T Consensus 20 ~dl~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~ 51 (81)
T 3lae_A 20 RDLNKMFNWELDTEDARTFNGLILEHLEEIPD 51 (81)
T ss_dssp HHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCC
T ss_pred HHHHHHhCCCCCCCCCccHHHHHHHHhCCCCC
Confidence 44555555 4999999999998886
No 6
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=12.70 E-value=93 Score=22.43 Aligned_cols=16 Identities=38% Similarity=0.642 Sum_probs=14.2
Q ss_pred cchhhhHHhhhcchhH
Q 019299 119 PTVGGLLNATCGNATE 134 (343)
Q Consensus 119 ~~vggll~a~~gslpE 134 (343)
+++||+++.-+|.+|+
T Consensus 36 ~Tl~G~i~~~lg~iP~ 51 (83)
T 3llb_A 36 DTVGGLVMSAFGHLPK 51 (83)
T ss_dssp SBHHHHHHHHHSSCCC
T ss_pred cCHHHHHHHHhCcCCC
Confidence 4999999999999886
No 7
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=11.26 E-value=3.1e+02 Score=16.96 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=15.1
Q ss_pred ccccchhhhcchHHHHHHHHHHHHHHH
Q 019299 180 KEQKYDRKQADVNSLLLLLALLCHMLP 206 (343)
Q Consensus 180 ~~~~~~~~~a~~~~~ll~la~l~l~lP 206 (343)
.+|.......+.+..++++-+++++.+
T Consensus 6 n~q~VELNRTSLy~GLLlifvlavlFs 32 (37)
T 3arc_L 6 NRQPVELNRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp TCCCBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceechhhHHHHHHHHHHHHHHhh
Confidence 344444444466667777666665544
No 8
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=9.90 E-value=9e+02 Score=21.48 Aligned_cols=7 Identities=14% Similarity=0.140 Sum_probs=2.8
Q ss_pred hhHhHHH
Q 019299 227 SRASSIV 233 (343)
Q Consensus 227 sr~~sii 233 (343)
|.++.++
T Consensus 6 ~~~~~~~ 12 (311)
T 3mk7_C 6 SGYIALL 12 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344433
No 9
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4
Probab=9.81 E-value=1.3e+02 Score=21.78 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=13.9
Q ss_pred cchhhhHHhhhcchhH
Q 019299 119 PTVGGLLNATCGNATE 134 (343)
Q Consensus 119 ~~vggll~a~~gslpE 134 (343)
+++||+++.-+|.+|+
T Consensus 35 dTl~G~v~~~lg~iP~ 50 (87)
T 2rk5_A 35 DTIAGFYLTGVGTIPS 50 (87)
T ss_dssp CBHHHHHHHHHCSCCC
T ss_pred ccHHHHHHHHhCcCCC
Confidence 4999999999998886
No 10
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=8.23 E-value=1.7e+02 Score=21.42 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=0.0
Q ss_pred HHHHHHhC--------cchhhhHHhhhcchhH
Q 019299 111 EQIAFYTG--------PTVGGLLNATCGNATE 134 (343)
Q Consensus 111 e~lA~~~G--------~~vggll~a~~gslpE 134 (343)
+++.+.+| +++||+++.-+|.+|+
T Consensus 29 ~dl~~~l~~~l~~~~~dTlgG~i~~~lg~iP~ 60 (91)
T 2pli_A 29 EDINTFFGTEYSSEEADTIGGLVIQELGHLPV 60 (91)
T ss_dssp HHHHHHHCCCCCCSSCCBHHHHHHHHHSSCCC
T ss_pred HHHHHHhCCCCCCCCCccHHHHHHHHhCCCCC
Done!