BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019301
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FSR|A Chain A, Crystal Structure Of The Acetyltransferase From
Agrobacterium Tumefaciens Str. C58
Length = 195
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 152 NDTSSCQPEDSSNGLPIVPCGLIAWSLFNDTFKFIRESSELVVNRKNIAWKSDRNHKFGK 211
+T C + N P+ P + W L+ + + ++E V ++ A+++
Sbjct: 93 GETGECIGQIGINHGPLFPEKELGWLLY-EGHEGRGYAAEAAVALRDWAFETLNLPTLVS 151
Query: 212 QVYPFNFQNGTFIG--GGSLDPSVPLSDQEDLI 242
V P N ++ GG+LDP P SD EDL+
Sbjct: 152 YVSPQNRKSAAVAERIGGTLDPLAPRSDPEDLV 184
>pdb|2CB0|A Chain A, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
From Pyrococcus Furiosus
pdb|2CB0|B Chain B, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
From Pyrococcus Furiosus
Length = 333
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 216 FNFQNGTFIGGGSLDP---SVPLSDQEDLIVWMRTAALPSFRKMYG 258
F+FQN F+G G L P L +E I W + A P+F +G
Sbjct: 185 FDFQNVIFLGSGLLYPVALEASLKXKEXAIFW--SEAYPTFEVRHG 228
>pdb|1C72|A Chain A, Tyr115, Gln165 And Trp209 Contribute To The
1,2-Epoxy-3-(P- Nitrophenoxy)propane Conjugating
Activities Of Glutathione S-Transferase Cgstm1-1
pdb|1C72|B Chain B, Tyr115, Gln165 And Trp209 Contribute To The
1,2-Epoxy-3-(P- Nitrophenoxy)propane Conjugating
Activities Of Glutathione S-Transferase Cgstm1-1
pdb|1C72|C Chain C, Tyr115, Gln165 And Trp209 Contribute To The
1,2-Epoxy-3-(P- Nitrophenoxy)propane Conjugating
Activities Of Glutathione S-Transferase Cgstm1-1
pdb|1C72|D Chain D, Tyr115, Gln165 And Trp209 Contribute To The
1,2-Epoxy-3-(P- Nitrophenoxy)propane Conjugating
Activities Of Glutathione S-Transferase Cgstm1-1
Length = 219
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 70 SHSVIEIVERYDTECIPEKFRGNKVSYIKDSTILKNCSLYLKVPKHMKAPIYIYYQLDN 128
++ V++ + +C PE +GN +++ L+ S Y++ + MKAPI+ Y L N
Sbjct: 159 AYDVLDQQRMFVPDC-PE-LQGNLSQFLQRFEALEKISAYMRSGRFMKAPIFWYTALWN 215
>pdb|1GSU|A Chain A, An Avian Class-Mu Glutathione S-Transferase, Cgstm1-1 At
1.94 Angstrom Resolution
pdb|1GSU|B Chain B, An Avian Class-Mu Glutathione S-Transferase, Cgstm1-1 At
1.94 Angstrom Resolution
Length = 219
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 70 SHSVIEIVERYDTECIPEKFRGNKVSYIKDSTILKNCSLYLKVPKHMKAPIYIYYQLDN 128
++ V++ + +C PE +GN +++ L+ S Y++ + MKAPI+ Y L N
Sbjct: 159 AYDVLDQQRMFVPDC-PE-LQGNLSQFLQRFEALEKISAYMRSGRFMKAPIFWYTALWN 215
>pdb|3TLQ|A Chain A, Crystal Structure Of Eal-Like Domain Protein Ydiv
pdb|3TLQ|B Chain B, Crystal Structure Of Eal-Like Domain Protein Ydiv
Length = 242
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 126 LDNYYQNHRRYVKSRNDQQLLHGLKSNDTSSCQPEDSSNGLPIVPCGLIA-------WSL 178
L+N Y + ++ R++QQ+L G++ + ED + +P +IA W L
Sbjct: 10 LENLYHSDCYFLPIRDNQQVLVGVEL--ITHFSSEDGTVRIPT--SRVIAQLTEEQHWQL 65
Query: 179 FNDTFKFIRESSELVVNRKNIAW 201
F++ + ++ + K AW
Sbjct: 66 FSEQLELLKSCQHFFIQHKLFAW 88
>pdb|4ES4|A Chain A, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|C Chain C, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|E Chain E, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|G Chain G, Crystal Structure Of Ydiv And Flhd Complex
Length = 237
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 126 LDNYYQNHRRYVKSRNDQQLLHGLKSNDTSSCQPEDSSNGLPI--VPCGLIA---WSLFN 180
L+N Y + ++ R++QQ+L G++ + ED + +P V L W LF+
Sbjct: 5 LENLYHSDCYFLPIRDNQQVLVGVEL--ITHFSSEDGTVRIPTSRVIAQLTEEQHWQLFS 62
Query: 181 DTFKFIRESSELVVNRKNIAW 201
+ + ++ + K AW
Sbjct: 63 EQLELLKSCQHFFIQHKLFAW 83
>pdb|4GD3|A Chain A, Structure Of E. Coli Hydrogenase-1 In Complex With
Cytochrome B
pdb|4GD3|B Chain B, Structure Of E. Coli Hydrogenase-1 In Complex With
Cytochrome B
Length = 235
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 225 GGGSLDPSVPLSDQEDLIVWMRTAALPSFRKMYGRIEEDLDADDVIAVHLMNNYNTYSFG 284
GG S+D + L +W+ A + +Y + ED+ +DD + ++N Y ++ FG
Sbjct: 174 GGNSMD----IHSWHRLGMWLIGAFVIG--HVYMALREDIMSDDTVISTMVNGYRSHKFG 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,094,028
Number of Sequences: 62578
Number of extensions: 480850
Number of successful extensions: 826
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 818
Number of HSP's gapped (non-prelim): 13
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)