Query 019301
Match_columns 343
No_of_seqs 119 out of 521
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:20:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2952 Cell cycle control pro 100.0 2E-111 4E-116 801.2 26.3 322 18-343 15-350 (351)
2 COG5035 CDC50 Cell cycle contr 100.0 2.5E-98 5E-103 698.1 22.6 320 19-343 16-371 (372)
3 PF03381 CDC50: LEM3 (ligand-e 100.0 8.5E-85 1.8E-89 619.9 22.6 261 66-337 1-278 (278)
4 PF01102 Glycophorin_A: Glycop 83.9 0.93 2E-05 38.5 2.7 24 306-329 66-89 (122)
5 PF01102 Glycophorin_A: Glycop 58.7 16 0.00034 31.0 4.2 30 303-332 66-95 (122)
6 PF05915 DUF872: Eukaryotic pr 56.9 23 0.00049 29.7 4.8 24 46-69 44-67 (115)
7 COG1470 Predicted membrane pro 56.6 45 0.00097 34.6 7.7 58 263-330 455-512 (513)
8 PF11797 DUF3324: Protein of u 51.1 14 0.00031 31.6 2.8 47 246-293 85-131 (140)
9 PF05393 Hum_adeno_E3A: Human 44.0 35 0.00076 27.3 3.7 32 297-328 26-57 (94)
10 PF05399 EVI2A: Ectropic viral 41.8 42 0.0009 31.2 4.4 21 303-323 129-149 (227)
11 PF10204 DuoxA: Dual oxidase m 41.7 22 0.00048 34.4 2.8 31 300-333 240-270 (281)
12 PF12669 P12: Virus attachment 41.7 19 0.0004 26.5 1.8 26 309-334 2-27 (58)
13 PF12273 RCR: Chitin synthesis 38.6 20 0.00044 30.2 1.8 24 46-69 1-24 (130)
14 PF12158 DUF3592: Protein of u 35.7 52 0.0011 27.4 3.9 24 45-68 121-147 (148)
15 PF05915 DUF872: Eukaryotic pr 33.5 37 0.0008 28.5 2.5 27 300-326 42-68 (115)
16 PF14991 MLANA: Protein melan- 33.3 10 0.00022 31.8 -0.8 42 281-334 11-52 (118)
17 PF04835 Pox_A9: A9 protein co 29.4 93 0.002 22.6 3.6 26 49-74 25-51 (54)
18 PF09788 Tmemb_55A: Transmembr 29.3 57 0.0012 31.1 3.3 25 45-69 194-218 (256)
19 PF08507 COPI_assoc: COPI asso 29.0 88 0.0019 26.5 4.2 28 305-332 85-112 (136)
20 PF12606 RELT: Tumour necrosis 28.9 60 0.0013 23.3 2.6 25 306-330 2-26 (50)
21 KOG4753 Predicted membrane pro 27.1 1.6E+02 0.0035 24.9 5.2 29 40-68 45-73 (124)
22 PHA02898 virion envelope prote 26.0 74 0.0016 25.5 2.9 22 311-332 17-38 (92)
23 PF02009 Rifin_STEVOR: Rifin/s 25.5 73 0.0016 31.1 3.4 31 303-333 257-287 (299)
24 PF05767 Pox_A14: Poxvirus vir 25.5 88 0.0019 25.2 3.2 33 301-335 9-41 (92)
25 PRK02935 hypothetical protein; 25.5 91 0.002 25.9 3.4 66 44-119 35-105 (110)
26 PF15048 OSTbeta: Organic solu 25.4 97 0.0021 26.4 3.7 25 306-330 37-61 (125)
27 PF13038 DUF3899: Domain of un 24.4 75 0.0016 24.9 2.7 24 51-74 4-27 (92)
28 PF10260 SAYSvFN: Uncharacteri 22.6 1.1E+02 0.0024 23.5 3.2 30 311-340 18-48 (71)
29 PF04639 Baculo_E56: Baculovir 22.6 37 0.0008 33.0 0.7 34 296-329 270-303 (305)
30 PF14914 LRRC37AB_C: LRRC37A/B 22.4 1.9E+02 0.004 25.5 4.9 38 299-336 116-153 (154)
31 PF01034 Syndecan: Syndecan do 22.3 33 0.00071 25.9 0.3 9 323-331 31-39 (64)
32 PF01299 Lamp: Lysosome-associ 22.0 63 0.0014 31.2 2.3 24 309-332 275-298 (306)
33 PF09788 Tmemb_55A: Transmembr 21.8 67 0.0015 30.6 2.3 40 295-334 187-227 (256)
34 PF04478 Mid2: Mid2 like cell 21.6 14 0.00029 32.6 -2.2 9 299-307 47-55 (154)
35 PF05399 EVI2A: Ectropic viral 21.5 3E+02 0.0066 25.7 6.3 22 46-67 128-149 (227)
36 PHA02680 ORF090 IMV phosphoryl 21.5 1E+02 0.0022 24.7 2.9 20 311-330 17-36 (91)
37 PHA02726 hypothetical protein; 21.5 1.4E+02 0.0029 24.0 3.6 22 301-322 7-28 (94)
38 PF06679 DUF1180: Protein of u 21.4 1.6E+02 0.0035 26.2 4.5 29 300-328 90-118 (163)
39 KOG2887 Membrane protein invol 21.0 1E+02 0.0022 27.8 3.1 32 302-334 47-78 (175)
40 PF04277 OAD_gamma: Oxaloaceta 20.9 1.6E+02 0.0035 22.2 3.9 22 305-326 6-27 (79)
41 COG5102 SFT2 Membrane protein 20.9 91 0.002 28.1 2.8 53 278-334 44-100 (201)
42 PF07234 DUF1426: Protein of u 20.9 1.2E+02 0.0026 24.9 3.2 24 302-325 16-39 (117)
43 PF06365 CD34_antigen: CD34/Po 20.7 76 0.0016 29.3 2.4 23 306-328 103-125 (202)
44 PHA02692 hypothetical protein; 20.6 1.4E+02 0.0031 22.9 3.4 27 302-328 42-68 (70)
45 PF02038 ATP1G1_PLM_MAT8: ATP1 20.3 83 0.0018 22.6 2.0 23 304-326 14-36 (50)
No 1
>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-111 Score=801.24 Aligned_cols=322 Identities=50% Similarity=0.896 Sum_probs=295.5
Q ss_pred CccccCCCCCCCcccccccCCcccccchhHHHHHHHHHHHHHHHHHHhhhhhcCceEEEEEeCCCCCCCCccCCCceeee
Q 019301 18 IPIQSRRAKVFYQFTQQNLPACKPVLTPSWIVTTFLLMGVIFIPIGLVTLRTSHSVIEIVERYDTECIPEKFRGNKVSYI 97 (343)
Q Consensus 18 ~~~~~s~~p~~~~f~QQ~l~aw~p~ltp~~v~~~f~~ig~ifi~iGi~~~~~s~~v~E~~i~Y~~~c~~~~~~~~~~~~~ 97 (343)
...+++|||++++|+|||||||||++||++|+++||++|++|++||+++++++++|.|++++|++ |.+.+....+.+++
T Consensus 15 ~~~~~s~rP~~t~f~QQrLpA~qPilt~~~vlp~f~i~g~vFipiGv~l~~as~~v~Ei~i~YTd-c~~~~~~~~~~~~~ 93 (351)
T KOG2952|consen 15 GNRKKSRRPKNTAFKQQRLPAWQPILTPRTVLPLFFIIGVVFLPIGVGLLFASSKVIEITIRYTD-CIPTGFRTNPSEYI 93 (351)
T ss_pred chhhhccCCccccchhccccccccccCcchHHHHHHHHHHHHHhhhhheeEeecceEEEEEeccc-Cccccccccchhhh
Confidence 35667899999999999999999999999999999999999999999999999999999999977 87755445555555
Q ss_pred ecC-CCCceeEEEEEecCCCCCceEEEEEecchhhhhhhhhcCCCchhhcCCCCCC-CCCCCCcccCCCC-ceeeechhh
Q 019301 98 KDS-TILKNCSLYLKVPKHMKAPIYIYYQLDNYYQNHRRYVKSRNDQQLLHGLKSN-DTSSCQPEDSSNG-LPIVPCGLI 174 (343)
Q Consensus 98 ~~~-~~~~~C~v~f~i~~~mk~pVyvYY~L~NFyQNHrry~~S~s~~QL~G~~~~~-~~~~C~P~~~~~g-~~~~PCGli 174 (343)
+.. .+.+.|+++|+||++|++|||+||+|+|||||||||++|||++||+|+.... ..++|+|+++.++ ++|+|||||
T Consensus 94 ~~~~~~~~~C~~~f~vp~~~k~pVy~YY~L~nfyQNhRRYvkSr~d~QL~G~~~~~~~~~~C~Pl~~~~~~kpi~PCGlI 173 (351)
T KOG2952|consen 94 QGHFDQTKSCTITFTVPKDMKGPVYLYYELTNFYQNHRRYVKSRDDKQLRGEPSKELNVKSCAPLEYNEGGKPIYPCGLI 173 (351)
T ss_pred hcccCcccceEEEEEccccCCCCEEEEEehhHHHHHHHHHHhcccHHHhcCCCccccCccCCCcceecCCCceeeecchh
Confidence 532 2346799999999999999999999999999999999999999999997753 3366999998766 999999999
Q ss_pred hhcccccceecccCCc---eeeeecccccccCccccccCCCCC-------CCCCCCCccCCCCcCCCCCCCCCchhHHHH
Q 019301 175 AWSLFNDTFKFIRESS---ELVVNRKNIAWKSDRNHKFGKQVY-------PFNFQNGTFIGGGSLDPSVPLSDQEDLIVW 244 (343)
Q Consensus 175 A~S~FNDtf~l~~~~~---~i~~~~~gIaw~sD~~~kf~~~~~-------p~~w~~~~~~~~~~~~~~~~~~~ne~FivW 244 (343)
|||||||||++...+. .++++++||||++|+ +||+++.+ |+||+++.+.+| ..|.+.|+.+||+||||
T Consensus 174 AnSlFNDTf~~~~~~~~~~~~~l~~kgIaW~sDk-~kf~~p~~n~~~~~pPpnW~k~~~~gg-~~d~n~pl~~nedfivW 251 (351)
T KOG2952|consen 174 ANSLFNDTFELSLTNDGDSDYPLTTKGIAWESDK-HKFRKPIYNASGIVPPPNWQKGYPEGG-YTDDNIPLSENEDFIVW 251 (351)
T ss_pred cchhcccccchhcccCCCccceeccCCccchhhh-hhhcCCCCccccccCCccccccCCcCC-cCCCCCCchhhHHHHHH
Confidence 9999999999976533 789999999999999 79998755 999999999887 78888898999999999
Q ss_pred hhcCCCCchhhhhhhcccC-CCCCceEEEEEEeeecCcccCceEEEEEEeccccCCCCchhhHHHHHHHHHHHHHHHHHH
Q 019301 245 MRTAALPSFRKMYGRIEED-LDADDVIAVHLMNNYNTYSFGGKKKLVLSTSSWLGGKNDFLGVAYVFVGSSSIIISLVFM 323 (343)
Q Consensus 245 Mr~Aalp~FrKLYg~i~~~-l~~g~~y~v~I~nnypv~~F~G~K~ivlst~s~~GgkN~~Lgi~yivvG~i~~i~~i~f~ 323 (343)
||+||||+||||||||+++ |++| +|+++|++||||.+|+|+|.+||+|+||+||||+||||+|||||++|+++|++|+
T Consensus 252 MRtAAlPtFrKLy~~i~~~gL~~G-~y~l~i~~Nypv~sf~G~K~~vlst~SwlGgkN~FLgI~YLvVG~ic~~l~~~f~ 330 (351)
T KOG2952|consen 252 MRTAALPTFRKLYRIIESNGLPKG-TYQLNITNNYPVRSFNGKKKFVLSTTSWLGGKNPFLGIAYLVVGSICILLGLIFL 330 (351)
T ss_pred HHhcccchHHHHHhhhccCCCCCc-eEEEEEecccceeecCCceEEEEeeccccccCCccceehHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 8888 6999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCcccccCC
Q 019301 324 LLHVKNPRPYGETAYLSWNR 343 (343)
Q Consensus 324 ~~~~~~pr~~gd~~~l~w~~ 343 (343)
++|+++||++||++||+|++
T Consensus 331 ~~~l~~~r~~~d~~~l~~~~ 350 (351)
T KOG2952|consen 331 VIYLFKPRRLGDPSYLSWNR 350 (351)
T ss_pred HHHhhcccccCCcccccccc
Confidence 99999999999999999985
No 2
>COG5035 CDC50 Cell cycle control protein [Cell division and chromosome partitioning / Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-98 Score=698.13 Aligned_cols=320 Identities=37% Similarity=0.661 Sum_probs=283.8
Q ss_pred ccccCCCCCCCcccccccCCcccccchhHHHHHHHHHHHHHHHHHHhhhhhcCceEEEEEeCCCCCCCCcc------CC-
Q 019301 19 PIQSRRAKVFYQFTQQNLPACKPVLTPSWIVTTFLLMGVIFIPIGLVTLRTSHSVIEIVERYDTECIPEKF------RG- 91 (343)
Q Consensus 19 ~~~~s~~p~~~~f~QQ~l~aw~p~ltp~~v~~~f~~ig~ifi~iGi~~~~~s~~v~E~~i~Y~~~c~~~~~------~~- 91 (343)
...++|||.+++|+|||||||||++||+.|+++||++|++|.+||+.+++++.+|+|++|+|++ |...+. +.
T Consensus 16 ~~~k~r~p~nt~F~QQrL~awqpilsp~~vLpL~flig~vf~plG~gl~~~~s~VqeltI~Ytd-c~t~as~~f~~iPs~ 94 (372)
T COG5035 16 SLLKSRRPPNTAFRQQRLKAWQPILSPRTVLPLLFLIGIVFAPLGGGLLVASSSVQELTIDYTD-CMTLASDEFSDIPSE 94 (372)
T ss_pred ccccccCCchhhHHHhhccccccccCchHHHHHHHHHHHHHhhccceEEEEeeeeeeeeecccc-cccccchhhhhCchh
Confidence 4567899999999999999999999999999999999999999999999999999999999999 765441 11
Q ss_pred -------------Cceeeeec-CCCCceeEEEEEecCCCCCceEEEEEecchhhhhhhhhcCCCchhhcCCCCCCCC--C
Q 019301 92 -------------NKVSYIKD-STILKNCSLYLKVPKHMKAPIYIYYQLDNYYQNHRRYVKSRNDQQLLHGLKSNDT--S 155 (343)
Q Consensus 92 -------------~~~~~~~~-~~~~~~C~v~f~i~~~mk~pVyvYY~L~NFyQNHrry~~S~s~~QL~G~~~~~~~--~ 155 (343)
..|....+ ..+...|++.|++|++||.|||+||+|+|||||||||++|.|.+||+|+..+.+. +
T Consensus 95 ~~~~~f~~~~~~~pqW~~~~~~~~d~~~C~irf~vp~~~k~~vfiyyrl~nFyQNhrRY~~S~d~dQl~Ge~~~~~~l~~ 174 (372)
T COG5035 95 YIQFHFKKKVNVLPQWRFSTDEEDDFQKCQIRFTVPSDMKKPVFIYYRLTNFYQNHRRYVKSFDEDQLRGEALKSDDLKS 174 (372)
T ss_pred heeeeeecccccccceeecccccCCcceeEEEEEchhhcccceeeeehhHHHHHhhHHHHhccCHHHhcCcccccccccc
Confidence 11222211 1234579999999999999999999999999999999999999999999776432 7
Q ss_pred CCCcccCCCCceeeechhhhhcccccceeccc----CCceeeeecccccccCccccccCCC-------CCCCCCCCCccC
Q 019301 156 SCQPEDSSNGLPIVPCGLIAWSLFNDTFKFIR----ESSELVVNRKNIAWKSDRNHKFGKQ-------VYPFNFQNGTFI 224 (343)
Q Consensus 156 ~C~P~~~~~g~~~~PCGliA~S~FNDtf~l~~----~~~~i~~~~~gIaw~sD~~~kf~~~-------~~p~~w~~~~~~ 224 (343)
.|.|+.+..+|+||||||||||||||||+... +++.+.++.+||||++|++ +|+.+ ++||+|.+.++.
T Consensus 175 nC~PL~~nedK~~YPcGLIaNSmfNDtf~~~l~~i~Dts~Y~lttkgIaW~sDr~-rykktkYn~sdIvpPPnW~k~ypd 253 (372)
T COG5035 175 NCKPLSYNEDKIIYPCGLIANSMFNDTFSSLLTGIEDTSNYNLTTKGIAWESDRH-RYKKTKYNASDIVPPPNWAKMYPD 253 (372)
T ss_pred cCCcccccCCCeeecccccccccccccchhhccccccccccccccCCccchhhcc-cccCCCCChhhcCCCCchHhhCCC
Confidence 89999998889999999999999999998754 3456889999999999998 89865 579999877766
Q ss_pred CCCcCCCCCC-CCCchhHHHHhhcCCCCchhhhhhhcccC-CCCCceEEEEEEeeecCcccCceEEEEEEeccccCCCCc
Q 019301 225 GGGSLDPSVP-LSDQEDLIVWMRTAALPSFRKMYGRIEED-LDADDVIAVHLMNNYNTYSFGGKKKLVLSTSSWLGGKND 302 (343)
Q Consensus 225 ~~~~~~~~~~-~~~ne~FivWMr~Aalp~FrKLYg~i~~~-l~~g~~y~v~I~nnypv~~F~G~K~ivlst~s~~GgkN~ 302 (343)
| .-|.++| +.++|.|+||||+||||+|+||++|.+.| |.+| +|+++|+.||||..|+|+|+|||+|.|.+||||+
T Consensus 254 G--Ytd~NiPDls~wE~Fq~WMrtAafP~F~KLa~~N~~d~l~~G-~Y~lnI~l~fPv~~f~GtKsi~Ltt~SviGgkN~ 330 (372)
T COG5035 254 G--YTDDNIPDLSTWEEFQNWMRTAAFPKFSKLAMRNVNDVLPPG-TYQLNITLNFPVLEFNGTKSIVLTTNSVIGGKNY 330 (372)
T ss_pred C--CCccCCCcchhHHHHHHHhhcccCchHHHHhcccccccCCCc-eEEEEEEeecceeecCCceEEEEEecccccCCCc
Confidence 5 3355666 67999999999999999999999998765 6676 6999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccCC
Q 019301 303 FLGVAYVFVGSSSIIISLVFMLLHVKNPRPYGETAYLSWNR 343 (343)
Q Consensus 303 ~Lgi~yivvG~i~~i~~i~f~~~~~~~pr~~gd~~~l~w~~ 343 (343)
||||+|||||++|.++|++|++.++++||++||++||+||.
T Consensus 331 fLGI~ylivg~ical~~~if~~~~~f~pR~~~Dh~yLnw~~ 371 (372)
T COG5035 331 FLGIVYLIVGGICALLGLIFLIKWLFKPRKMADHSYLNWNM 371 (372)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhCCcccCCcccccccC
Confidence 99999999999999999999999999999999999999984
No 3
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=100.00 E-value=8.5e-85 Score=619.91 Aligned_cols=261 Identities=47% Similarity=0.841 Sum_probs=227.3
Q ss_pred hhhhcCceEEEEEeCCCCCCCCccCCCceeeeecCCCCceeEEEEEecCCCCCceEEEEEecchhhhhhhhhcCCCchhh
Q 019301 66 TLRTSHSVIEIVERYDTECIPEKFRGNKVSYIKDSTILKNCSLYLKVPKHMKAPIYIYYQLDNYYQNHRRYVKSRNDQQL 145 (343)
Q Consensus 66 ~~~~s~~v~E~~i~Y~~~c~~~~~~~~~~~~~~~~~~~~~C~v~f~i~~~mk~pVyvYY~L~NFyQNHrry~~S~s~~QL 145 (343)
|++++++++|++++||++|...... ........++|.++|+||++|++||||||||+|||||||||++|||++||
T Consensus 1 ll~~s~~v~E~~~~Yd~~~~~~~~~-----~~~~~~~~~~c~v~f~i~~~~~~pVyvYY~L~nFYQNhr~y~~S~~~~QL 75 (278)
T PF03381_consen 1 LLVASNSVVEIEIRYDDCCDCQNCY-----INEFSPIPCTCSVTFNIPEDMKGPVYVYYELTNFYQNHRRYVKSRSDSQL 75 (278)
T ss_pred CEEEeCCEEEEEEECCCCCCCCCcc-----ccccCCCCceEEEEEEcCccCCCCEEEEEEEehhhHHhHHHHhcCCHHHh
Confidence 4678999999999999988653210 00111224589999999999999999999999999999999999999999
Q ss_pred cCCCCCCC-CCCCCcccCC---CCceeeechhhhhcccccceeccc----CCceeeeecccccccCccccccCCCC----
Q 019301 146 LHGLKSND-TSSCQPEDSS---NGLPIVPCGLIAWSLFNDTFKFIR----ESSELVVNRKNIAWKSDRNHKFGKQV---- 213 (343)
Q Consensus 146 ~G~~~~~~-~~~C~P~~~~---~g~~~~PCGliA~S~FNDtf~l~~----~~~~i~~~~~gIaw~sD~~~kf~~~~---- 213 (343)
+|+..+.+ .++|+|+++. ++++++||||||||||||||++.. .++.++++++||||++|++.+|+++.
T Consensus 76 ~G~~~~~~~~~~C~p~~~~~~~~~~~~~PCGliA~S~FNDtF~l~~~~~~~~~~~~~~~~gIaw~~d~~~~fk~~~~~~~ 155 (278)
T PF03381_consen 76 KGKIVSKSDLSDCDPLRTNNENNGKIIYPCGLIANSMFNDTFSLYRRNSGNNENIPLDETGIAWSSDRESKFKNPHYNNS 155 (278)
T ss_pred CCCccccCCCCCCCCceeccCCCCCEeecccHhHhhhccceEEeeecccCCCceeeeecccccCchHHHHhcCCCCCccc
Confidence 99985543 3799999976 789999999999999999999974 34679999999999999988999853
Q ss_pred ---CCCCCCCCccCCCCcCCCCCCCC-CchhHHHHhhcCCCCchhhhhhhc-ccCCCCCceEEEEEEeeecCcccCceEE
Q 019301 214 ---YPFNFQNGTFIGGGSLDPSVPLS-DQEDLIVWMRTAALPSFRKMYGRI-EEDLDADDVIAVHLMNNYNTYSFGGKKK 288 (343)
Q Consensus 214 ---~p~~w~~~~~~~~~~~~~~~~~~-~ne~FivWMr~Aalp~FrKLYg~i-~~~l~~g~~y~v~I~nnypv~~F~G~K~ 288 (343)
+|++|... .+.+...|.. +|||||||||+||||+|||||||| +++|++|. |+|+|+|||||+.|+|+|+
T Consensus 156 ~~~~~~~W~~~-----~~~~~~~p~~~~ne~fivWMr~a~lp~FrKLYg~i~~~~L~~G~-y~i~I~nnypv~~f~G~K~ 229 (278)
T PF03381_consen 156 NTVPPPNWRPG-----YENDTPWPDNSENEHFIVWMRPAALPTFRKLYGRIDNDDLPAGN-YTIDITNNYPVSSFGGKKS 229 (278)
T ss_pred cccCCCceeee-----ccCCCCCCcccccHHHHHHhccccCCCeeEeEeeeccCCCCCce-EEEEEEEeecccccCcEEE
Confidence 46677431 2233334443 699999999999999999999999 88999996 9999999999999999999
Q ss_pred EEEEeccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc
Q 019301 289 LVLSTSSWLGGKNDFLGVAYVFVGSSSIIISLVFMLLHVKNPRPYGETA 337 (343)
Q Consensus 289 ivlst~s~~GgkN~~Lgi~yivvG~i~~i~~i~f~~~~~~~pr~~gd~~ 337 (343)
|||+|+||+||||+||||+||++|+||+++|++|+++|+++||++||++
T Consensus 230 ivlst~s~~Ggkn~~Lgi~ylvvg~i~~v~~i~~~~~~~~~~r~~gD~~ 278 (278)
T PF03381_consen 230 IVLSTTSWFGGKNYFLGIAYLVVGGICLVLAIIFLIIHYFKPRKLGDTS 278 (278)
T ss_pred EEEEeccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999985
No 4
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=83.93 E-value=0.93 Score=38.46 Aligned_cols=24 Identities=8% Similarity=0.254 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 019301 306 VAYVFVGSSSIIISLVFMLLHVKN 329 (343)
Q Consensus 306 i~yivvG~i~~i~~i~f~~~~~~~ 329 (343)
|+.||+|+++-++++++++.++.+
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666665553
No 5
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=58.65 E-value=16 Score=31.05 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 019301 303 FLGVAYVFVGSSSIIISLVFMLLHVKNPRP 332 (343)
Q Consensus 303 ~Lgi~yivvG~i~~i~~i~f~~~~~~~pr~ 332 (343)
-.||+|-|++||.+++.+++++++..++|.
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 588888888888888887777777666653
No 6
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=56.91 E-value=23 Score=29.72 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Q 019301 46 SWIVTTFLLMGVIFIPIGLVTLRT 69 (343)
Q Consensus 46 ~~v~~~f~~ig~ifi~iGi~~~~~ 69 (343)
.....+++++|++++.+|++++..
T Consensus 44 I~la~~Lli~G~~li~~g~l~~~~ 67 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLFFG 67 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345567778889999999888764
No 7
>COG1470 Predicted membrane protein [Function unknown]
Probab=56.55 E-value=45 Score=34.59 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=35.7
Q ss_pred CCCCCceEEEEEEeeecCcccCceEEEEEEeccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 019301 263 DLDADDVIAVHLMNNYNTYSFGGKKKLVLSTSSWLGGKNDFLGVAYVFVGSSSIIISLVFMLLHVKNP 330 (343)
Q Consensus 263 ~l~~g~~y~v~I~nnypv~~F~G~K~ivlst~s~~GgkN~~Lgi~yivvG~i~~i~~i~f~~~~~~~p 330 (343)
+-.+|+ |.+.|+-.=+...+..+=.+++-+.|-- .++|| +.|.++++.++++++-+.+
T Consensus 455 ~a~aGd-Y~i~i~~ksDq~s~e~tlrV~V~~sS~s----t~iGI-----~Ii~~~v~~L~fviRK~GR 512 (513)
T COG1470 455 DAGAGD-YRITITAKSDQASSEDTLRVVVGQSSTS----TYIGI-----AIIVLVVLGLIFVIRKFGR 512 (513)
T ss_pred CCCCCc-EEEEEEEeeccccccceEEEEEeccccc----hhhhH-----HHHHHHHHHHHhhhHHhcC
Confidence 455776 8888887777888877777777776642 24444 4444445555555544443
No 8
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=51.08 E-value=14 Score=31.60 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=32.0
Q ss_pred hcCCCCchhhhhhhcccCCCCCceEEEEEEeeecCcccCceEEEEEEe
Q 019301 246 RTAALPSFRKMYGRIEEDLDADDVIAVHLMNNYNTYSFGGKKKLVLST 293 (343)
Q Consensus 246 r~Aalp~FrKLYg~i~~~l~~g~~y~v~I~nnypv~~F~G~K~ivlst 293 (343)
+.|+-++|.=.-..=++.|.|| +|++.++-...-..|.-+|.|.|+.
T Consensus 85 ~mAPNS~f~~~i~~~~~~lk~G-~Y~l~~~~~~~~~~W~f~k~F~It~ 131 (140)
T PF11797_consen 85 QMAPNSNFNFPIPLGGKKLKPG-KYTLKITAKSGKKTWTFTKDFTITA 131 (140)
T ss_pred EECCCCeEEeEecCCCcCccCC-EEEEEEEEEcCCcEEEEEEEEEECH
Confidence 4455555442211113478888 5999999888888888889998864
No 9
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=43.95 E-value=35 Score=27.35 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=20.6
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 019301 297 LGGKNDFLGVAYVFVGSSSIIISLVFMLLHVK 328 (343)
Q Consensus 297 ~GgkN~~Lgi~yivvG~i~~i~~i~f~~~~~~ 328 (343)
+|..-.-||+.|++++++.+++.+++++-.+.
T Consensus 26 ~~n~~~~Lgm~~lvI~~iFil~VilwfvCC~k 57 (94)
T PF05393_consen 26 FVNNWPNLGMWFLVICGIFILLVILWFVCCKK 57 (94)
T ss_pred ecCCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444578888998888766665555544433
No 10
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=41.82 E-value=42 Score=31.20 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 019301 303 FLGVAYVFVGSSSIIISLVFM 323 (343)
Q Consensus 303 ~Lgi~yivvG~i~~i~~i~f~ 323 (343)
.+=|.+||+|++.+|..++|+
T Consensus 129 amLIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 129 AMLICLIIIAVLFLICTLLFL 149 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888777777776
No 11
>PF10204 DuoxA: Dual oxidase maturation factor; InterPro: IPR018469 DuoxA (Dual oxidase maturation factor) is the essential protein necessary for the final release of DUOX2 (an NADPH:O2 oxidoreductase flavoprotein) from the endoplasmic reticulum. Dual oxidases (DUOX1 and DUOX2) constitute the catalytic core of the hydrogen peroxide generator, which generates H2O2 at the apical membrane of thyroid follicular cells, essential for iodination of thyroglobulin by thyroid peroxidases. DuoxA carries five membrane-integral regions including a reverse signal-anchor with external N terminus (type III) and two N-glycosylation sites []. It is conserved from nematodes to humans.; GO: 0015031 protein transport, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=41.75 E-value=22 Score=34.39 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=25.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 019301 300 KNDFLGVAYVFVGSSSIIISLVFMLLHVKNPRPY 333 (343)
Q Consensus 300 kN~~Lgi~yivvG~i~~i~~i~f~~~~~~~pr~~ 333 (343)
.+.+|- +++|.+|+++|+++.++++.+|.++
T Consensus 240 ~~Fwl~---LatGiLc~l~G~~i~~ld~~~p~~l 270 (281)
T PF10204_consen 240 WCFWLT---LATGILCLLLGLIIVFLDYIRPHKL 270 (281)
T ss_pred cHHHHH---HHHHHHHHHHHHHHHHHHHhChHHH
Confidence 455433 6799999999999999999999765
No 12
>PF12669 P12: Virus attachment protein p12 family
Probab=41.66 E-value=19 Score=26.47 Aligned_cols=26 Identities=8% Similarity=0.151 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCC
Q 019301 309 VFVGSSSIIISLVFMLLHVKNPRPYG 334 (343)
Q Consensus 309 ivvG~i~~i~~i~f~~~~~~~pr~~g 334 (343)
||||+|.+++++..++.++++.++-|
T Consensus 2 iII~~Ii~~~~~~v~~r~~~k~~K~G 27 (58)
T PF12669_consen 2 IIIGIIILAAVAYVAIRKFIKDKKKG 27 (58)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34555555444433446666666665
No 13
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=38.58 E-value=20 Score=30.18 Aligned_cols=24 Identities=4% Similarity=0.387 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Q 019301 46 SWIVTTFLLMGVIFIPIGLVTLRT 69 (343)
Q Consensus 46 ~~v~~~f~~ig~ifi~iGi~~~~~ 69 (343)
+|++.++|++.++++++++.+...
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666665555543
No 14
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=35.73 E-value=52 Score=27.40 Aligned_cols=24 Identities=33% Similarity=0.646 Sum_probs=16.7
Q ss_pred hhHHHHHHHHH---HHHHHHHHHhhhh
Q 019301 45 PSWIVTTFLLM---GVIFIPIGLVTLR 68 (343)
Q Consensus 45 p~~v~~~f~~i---g~ifi~iGi~~~~ 68 (343)
..++..+++++ |++|+++|+.+++
T Consensus 121 ~~~~~~~~~~~~~lG~~~~~~gl~~~v 147 (148)
T PF12158_consen 121 GLWLMFIFGFGFILGLIFFLVGLFMLV 147 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555544 8999999998775
No 15
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=33.50 E-value=37 Score=28.45 Aligned_cols=27 Identities=33% Similarity=0.456 Sum_probs=18.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHH
Q 019301 300 KNDFLGVAYVFVGSSSIIISLVFMLLH 326 (343)
Q Consensus 300 kN~~Lgi~yivvG~i~~i~~i~f~~~~ 326 (343)
|-..|+++.+++|.++++++++.++-+
T Consensus 42 K~I~la~~Lli~G~~li~~g~l~~~~~ 68 (115)
T PF05915_consen 42 KSIALAVFLLIFGTVLIIIGLLLFFGH 68 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 555777777777777777777665554
No 16
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=33.32 E-value=10 Score=31.77 Aligned_cols=42 Identities=21% Similarity=0.394 Sum_probs=1.6
Q ss_pred cccCceEEEEEEeccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 019301 281 YSFGGKKKLVLSTSSWLGGKNDFLGVAYVFVGSSSIIISLVFMLLHVKNPRPYG 334 (343)
Q Consensus 281 ~~F~G~K~ivlst~s~~GgkN~~Lgi~yivvG~i~~i~~i~f~~~~~~~pr~~g 334 (343)
..|.|+..-.|+.---.| +|.+.+|+|+++++--|+.+|+-|
T Consensus 11 ~~~kg~~~syitAEEAaG------------IGiL~VILgiLLliGCWYckRRSG 52 (118)
T PF14991_consen 11 YPFKGKGHSYITAEEAAG------------IGILIVILGILLLIGCWYCKRRSG 52 (118)
T ss_dssp -----------------S------------SS----------------------
T ss_pred CccccCCcceeeHHHhcc------------ceeHHHHHHHHHHHhheeeeecch
Confidence 346677777777665543 577778888888888888777655
No 17
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=29.38 E-value=93 Score=22.62 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=17.8
Q ss_pred HHHHHHHH-HHHHHHHHhhhhhcCceE
Q 019301 49 VTTFLLMG-VIFIPIGLVTLRTSHSVI 74 (343)
Q Consensus 49 ~~~f~~ig-~ifi~iGi~~~~~s~~v~ 74 (343)
+++=.+++ ++++.+|+++++.+++-.
T Consensus 25 Viik~vismimylilGi~L~yis~~~~ 51 (54)
T PF04835_consen 25 VIIKSVISMIMYLILGIALIYISSNDD 51 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcc
Confidence 33333444 788999999998887654
No 18
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=29.26 E-value=57 Score=31.13 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh
Q 019301 45 PSWIVTTFLLMGVIFIPIGLVTLRT 69 (343)
Q Consensus 45 p~~v~~~f~~ig~ifi~iGi~~~~~ 69 (343)
++.-.++|+++|++|+++|+.+.+.
T Consensus 194 aRkR~i~f~llgllfliiaigltvG 218 (256)
T PF09788_consen 194 ARKRAIIFFLLGLLFLIIAIGLTVG 218 (256)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455788999999999999988754
No 19
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=29.00 E-value=88 Score=26.49 Aligned_cols=28 Identities=11% Similarity=0.390 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 019301 305 GVAYVFVGSSSIIISLVFMLLHVKNPRP 332 (343)
Q Consensus 305 gi~yivvG~i~~i~~i~f~~~~~~~pr~ 332 (343)
++..+++|.+.+++|+++++.|+.++++
T Consensus 85 ~~~~~i~g~~~~~~G~~~i~l~~~~~~~ 112 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYIILGFFCPIK 112 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7777889999999999999999987765
No 20
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=28.90 E-value=60 Score=23.26 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Q 019301 306 VAYVFVGSSSIIISLVFMLLHVKNP 330 (343)
Q Consensus 306 i~yivvG~i~~i~~i~f~~~~~~~p 330 (343)
+++++|+.++++.-+.+++.|..+.
T Consensus 2 ~~~~iV~i~iv~~lLg~~I~~~~K~ 26 (50)
T PF12606_consen 2 IAFLIVSIFIVMGLLGLSICTTLKA 26 (50)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567788887777777777777655
No 21
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=27.07 E-value=1.6e+02 Score=24.92 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=18.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhh
Q 019301 40 KPVLTPSWIVTTFLLMGVIFIPIGLVTLR 68 (343)
Q Consensus 40 ~p~ltp~~v~~~f~~ig~ifi~iGi~~~~ 68 (343)
|+-+.......+++++|++.|.+|.+++.
T Consensus 45 r~P~k~i~lavvL~~fg~Lli~lg~fl~~ 73 (124)
T KOG4753|consen 45 RHPVKEIALAVVLLVFGLLLIGLGFFLAG 73 (124)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 33343444556677778888877766654
No 22
>PHA02898 virion envelope protein; Provisional
Probab=26.02 E-value=74 Score=25.54 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCC
Q 019301 311 VGSSSIIISLVFMLLHVKNPRP 332 (343)
Q Consensus 311 vG~i~~i~~i~f~~~~~~~pr~ 332 (343)
.|.+.+++|.+|.++-+.|..+
T Consensus 17 ~GIiLL~~ACIfAfidfSK~~~ 38 (92)
T PHA02898 17 FGIILLIVACICAYIELSKSEK 38 (92)
T ss_pred HHHHHHHHHHHHheehhhcCCC
Confidence 3555555555555555444433
No 23
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=25.55 E-value=73 Score=31.14 Aligned_cols=31 Identities=6% Similarity=0.261 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 019301 303 FLGVAYVFVGSSSIIISLVFMLLHVKNPRPY 333 (343)
Q Consensus 303 ~Lgi~yivvG~i~~i~~i~f~~~~~~~pr~~ 333 (343)
.+++..+++=+|.+|+-|+++|++++|.|+|
T Consensus 257 ~I~aSiiaIliIVLIMvIIYLILRYRRKKKm 287 (299)
T PF02009_consen 257 AIIASIIAILIIVLIMVIIYLILRYRRKKKM 287 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444555666666777777676665
No 24
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=25.54 E-value=88 Score=25.22 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=24.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 019301 301 NDFLGVAYVFVGSSSIIISLVFMLLHVKNPRPYGE 335 (343)
Q Consensus 301 N~~Lgi~yivvG~i~~i~~i~f~~~~~~~pr~~gd 335 (343)
|++=|+ ++.|.+.+++|.+|.+.-+.|..+-+|
T Consensus 9 n~~S~v--li~GiiLL~~aCIfAfidfsK~~~~~~ 41 (92)
T PF05767_consen 9 NYFSGV--LIGGIILLIAACIFAFIDFSKNTKPTD 41 (92)
T ss_pred hccchH--HHHHHHHHHHHHHHHhhhhccCCCCch
Confidence 444444 346888889999999988888876655
No 25
>PRK02935 hypothetical protein; Provisional
Probab=25.48 E-value=91 Score=25.87 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=37.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhh----cCceEEEEEeCCCCCCCCccCCCceeeeecCCCCc-eeEEEEEecCCCCC
Q 019301 44 TPSWIVTTFLLMGVIFIPIGLVTLRT----SHSVIEIVERYDTECIPEKFRGNKVSYIKDSTILK-NCSLYLKVPKHMKA 118 (343)
Q Consensus 44 tp~~v~~~f~~ig~ifi~iGi~~~~~----s~~v~E~~i~Y~~~c~~~~~~~~~~~~~~~~~~~~-~C~v~f~i~~~mk~ 118 (343)
+...++.+|+++|++++..+.+++.- |.+.+.+ . |-+.+.. ...+ .+.+-+ .|.-..++++++++
T Consensus 35 ~~~~~m~ifm~~G~l~~l~S~vvYFwiGmlStkavqV--~----CP~C~K~---TKmL-GrvD~CM~C~~PLTLd~~leg 104 (110)
T PRK02935 35 ESIIIMTIFMLLGFLAVIASTVVYFWIGMLSTKAVQV--I----CPSCEKP---TKML-GRVDACMHCNQPLTLDRSLEG 104 (110)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccceee--E----CCCCCch---hhhc-cceeecCcCCCcCCcCccccc
Confidence 46688999999999999888777643 3444444 2 4221100 0000 001112 47777888887776
Q ss_pred c
Q 019301 119 P 119 (343)
Q Consensus 119 p 119 (343)
+
T Consensus 105 k 105 (110)
T PRK02935 105 K 105 (110)
T ss_pred c
Confidence 5
No 26
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=25.36 E-value=97 Score=26.41 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Q 019301 306 VAYVFVGSSSIIISLVFMLLHVKNP 330 (343)
Q Consensus 306 i~yivvG~i~~i~~i~f~~~~~~~p 330 (343)
++-|+.+++++++|++++.+.....
T Consensus 37 ysiL~Ls~vvlvi~~~LLgrsi~AN 61 (125)
T PF15048_consen 37 YSILALSFVVLVISFFLLGRSIQAN 61 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhc
Confidence 4557788899999998888776643
No 27
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=24.37 E-value=75 Score=24.93 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcCceE
Q 019301 51 TFLLMGVIFIPIGLVTLRTSHSVI 74 (343)
Q Consensus 51 ~f~~ig~ifi~iGi~~~~~s~~v~ 74 (343)
++|.+|++++++|.++++......
T Consensus 4 ~~Fl~~l~lliig~~~~v~~~GfF 27 (92)
T PF13038_consen 4 ILFLVGLILLIIGGFLFVFQSGFF 27 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCch
Confidence 356778888888888888776654
No 28
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=22.63 E-value=1.1e+02 Score=23.49 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHH-HhCCCCCCCCcccc
Q 019301 311 VGSSSIIISLVFMLLH-VKNPRPYGETAYLS 340 (343)
Q Consensus 311 vG~i~~i~~i~f~~~~-~~~pr~~gd~~~l~ 340 (343)
.|.+.++++.++++.. +-++|+-|+.++-|
T Consensus 18 fG~vf~i~s~f~~I~~Nl~~~r~~ge~SAYS 48 (71)
T PF10260_consen 18 FGPVFFILSGFYLIFTNLGTPRKPGELSAYS 48 (71)
T ss_pred hhHHHHHHHHHHHHHHcCCCCCCCCCccchh
Confidence 3455555554444333 33459999987755
No 29
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=22.62 E-value=37 Score=32.95 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=18.8
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhC
Q 019301 296 WLGGKNDFLGVAYVFVGSSSIIISLVFMLLHVKN 329 (343)
Q Consensus 296 ~~GgkN~~Lgi~yivvG~i~~i~~i~f~~~~~~~ 329 (343)
.--..+.++.++++|.|++.+++-..|+++.+.+
T Consensus 270 s~S~s~~l~piil~IG~vl~i~~Ig~~ifK~~~~ 303 (305)
T PF04639_consen 270 SKSVSDSLLPIILIIGGVLLIVFIGYFIFKRLMN 303 (305)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHhhheeeEeecc
Confidence 3345677888887765555444444444433333
No 30
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=22.35 E-value=1.9e+02 Score=25.53 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=20.5
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 019301 299 GKNDFLGVAYVFVGSSSIIISLVFMLLHVKNPRPYGET 336 (343)
Q Consensus 299 gkN~~Lgi~yivvG~i~~i~~i~f~~~~~~~pr~~gd~ 336 (343)
|.|.-|-++..|++++.+++.++-++--+..+|+.++.
T Consensus 116 gY~nklilaisvtvv~~iliii~CLiei~shr~a~~~~ 153 (154)
T PF14914_consen 116 GYNNKLILAISVTVVVMILIIIFCLIEICSHRRASEED 153 (154)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 44444555656666655555444444444466666653
No 31
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=22.30 E-value=33 Score=25.88 Aligned_cols=9 Identities=11% Similarity=0.194 Sum_probs=0.4
Q ss_pred HHHHHhCCC
Q 019301 323 MLLHVKNPR 331 (343)
Q Consensus 323 ~~~~~~~pr 331 (343)
++++.++.|
T Consensus 31 f~iyR~rkk 39 (64)
T PF01034_consen 31 FLIYRMRKK 39 (64)
T ss_dssp ------S--
T ss_pred HHHHHHHhc
Confidence 333433444
No 32
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=22.05 E-value=63 Score=31.23 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Q 019301 309 VFVGSSSIIISLVFMLLHVKNPRP 332 (343)
Q Consensus 309 ivvG~i~~i~~i~f~~~~~~~pr~ 332 (343)
|+||+...++.|+.++.+++.+||
T Consensus 275 IaVG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 275 IAVGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred HHHHHHHHHHHHHHHHhheeEecc
Confidence 447777666666666777665443
No 33
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=21.80 E-value=67 Score=30.65 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=28.3
Q ss_pred cccCC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 019301 295 SWLGG-KNDFLGVAYVFVGSSSIIISLVFMLLHVKNPRPYG 334 (343)
Q Consensus 295 s~~Gg-kN~~Lgi~yivvG~i~~i~~i~f~~~~~~~pr~~g 334 (343)
|..|. -..--+|+|+++|.+.+++|+.+.+.-+..-+..|
T Consensus 187 SSVG~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~ 227 (256)
T PF09788_consen 187 SSVGPRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYG 227 (256)
T ss_pred ccccchHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcC
Confidence 34454 33456889999999999999998877766544444
No 34
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=21.63 E-value=14 Score=32.63 Aligned_cols=9 Identities=44% Similarity=0.615 Sum_probs=5.8
Q ss_pred CCCchhhHH
Q 019301 299 GKNDFLGVA 307 (343)
Q Consensus 299 gkN~~Lgi~ 307 (343)
.||..+|+.
T Consensus 47 nknIVIGvV 55 (154)
T PF04478_consen 47 NKNIVIGVV 55 (154)
T ss_pred CccEEEEEE
Confidence 456677766
No 35
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=21.55 E-value=3e+02 Score=25.69 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 019301 46 SWIVTTFLLMGVIFIPIGLVTL 67 (343)
Q Consensus 46 ~~v~~~f~~ig~ifi~iGi~~~ 67 (343)
.-.+++|++||++|++.-++++
T Consensus 128 ~amLIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 128 MAMLICLIIIAVLFLICTLLFL 149 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888777666555
No 36
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=21.53 E-value=1e+02 Score=24.69 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q 019301 311 VGSSSIIISLVFMLLHVKNP 330 (343)
Q Consensus 311 vG~i~~i~~i~f~~~~~~~p 330 (343)
.|.+.+++|.+|.++-+.|.
T Consensus 17 ~GIiLL~~ACIFAfidFSK~ 36 (91)
T PHA02680 17 CGVLLLTAACVFAFVDFSKN 36 (91)
T ss_pred HHHHHHHHHHHHhhhhhhcc
Confidence 46666666666666665553
No 37
>PHA02726 hypothetical protein; Provisional
Probab=21.50 E-value=1.4e+02 Score=24.00 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=17.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHH
Q 019301 301 NDFLGVAYVFVGSSSIIISLVF 322 (343)
Q Consensus 301 N~~Lgi~yivvG~i~~i~~i~f 322 (343)
|+.|++.|.|+|-++-++..++
T Consensus 7 npilsifYfiig~vs~l~~yl~ 28 (94)
T PHA02726 7 NPILNIFYFMIRKISGIISLLL 28 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999876665443
No 38
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=21.39 E-value=1.6e+02 Score=26.20 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=20.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 019301 300 KNDFLGVAYVFVGSSSIIISLVFMLLHVK 328 (343)
Q Consensus 300 kN~~Lgi~yivvG~i~~i~~i~f~~~~~~ 328 (343)
-...+--+++|+++++.++.+.|++.-+.
T Consensus 90 d~~~l~R~~~Vl~g~s~l~i~yfvir~~R 118 (163)
T PF06679_consen 90 DSPMLKRALYVLVGLSALAILYFVIRTFR 118 (163)
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 33456677788888888887777776654
No 39
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.95 E-value=1e+02 Score=27.84 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=25.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 019301 302 DFLGVAYVFVGSSSIIISLVFMLLHVKNPRPYG 334 (343)
Q Consensus 302 ~~Lgi~yivvG~i~~i~~i~f~~~~~~~pr~~g 334 (343)
..+++. ++.|.+|+++|.+.+.....+||+.+
T Consensus 47 ~~F~~c-l~~gv~c~~l~~~lf~v~~~~~~kFa 78 (175)
T KOG2887|consen 47 MGFGIC-LAGGVLCFLLAMVLFPVLVVSPRKFA 78 (175)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcccccceee
Confidence 345554 56899999999998888888888875
No 40
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=20.90 E-value=1.6e+02 Score=22.20 Aligned_cols=22 Identities=9% Similarity=0.336 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 019301 305 GVAYVFVGSSSIIISLVFMLLH 326 (343)
Q Consensus 305 gi~yivvG~i~~i~~i~f~~~~ 326 (343)
.+..+.+|.+.+++.++.++++
T Consensus 6 ~i~i~Gm~iVF~~L~lL~~~i~ 27 (79)
T PF04277_consen 6 QIMIIGMGIVFLVLILLILVIS 27 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 41
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=20.87 E-value=91 Score=28.09 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=30.4
Q ss_pred ecCcccCceEEEEEEeccccCCC----CchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 019301 278 YNTYSFGGKKKLVLSTSSWLGGK----NDFLGVAYVFVGSSSIIISLVFMLLHVKNPRPYG 334 (343)
Q Consensus 278 ypv~~F~G~K~ivlst~s~~Ggk----N~~Lgi~yivvG~i~~i~~i~f~~~~~~~pr~~g 334 (343)
+|+.++++..+. ++||||=. -..+|+. +..++.|..++..++=+-..+||+.+
T Consensus 44 ~pt~~~dl~~~~---q~s~F~Lsr~eR~vlF~~C-lLGa~ac~a~~~fmfpVl~lkPrkFi 100 (201)
T COG5102 44 FPTRKYDLEHYF---QSSEFGLSRFERAVLFSAC-LLGAGACSAFLYFMFPVLRLKPRKFI 100 (201)
T ss_pred cccccccccccc---ccchhhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHhcCcccee
Confidence 577777776654 68888843 3355566 33455555333323222334898875
No 42
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=20.86 E-value=1.2e+02 Score=24.94 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=19.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 019301 302 DFLGVAYVFVGSSSIIISLVFMLL 325 (343)
Q Consensus 302 ~~Lgi~yivvG~i~~i~~i~f~~~ 325 (343)
.|+|.+|+.+..+.++++++|-+-
T Consensus 16 LF~~AIFiAItIlYILLalL~EvP 39 (117)
T PF07234_consen 16 LFFGAIFIAITILYILLALLFEVP 39 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 478888888888888888887543
No 43
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=20.73 E-value=76 Score=29.28 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 019301 306 VAYVFVGSSSIIISLVFMLLHVK 328 (343)
Q Consensus 306 i~yivvG~i~~i~~i~f~~~~~~ 328 (343)
|+.+++|++|++++++..+-+++
T Consensus 103 I~lv~~g~~lLla~~~~~~Y~~~ 125 (202)
T PF06365_consen 103 IALVTSGSFLLLAILLGAGYCCH 125 (202)
T ss_pred EehHHhhHHHHHHHHHHHHHHhh
Confidence 44566787777766655533333
No 44
>PHA02692 hypothetical protein; Provisional
Probab=20.63 E-value=1.4e+02 Score=22.88 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=14.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHh
Q 019301 302 DFLGVAYVFVGSSSIIISLVFMLLHVK 328 (343)
Q Consensus 302 ~~Lgi~yivvG~i~~i~~i~f~~~~~~ 328 (343)
.+.....++++.+..++.++|.+.+++
T Consensus 42 ~~~~~~~ii~~~~~~~~~vll~flYLK 68 (70)
T PHA02692 42 GVPWTTVFLIGLIAAAIGVLLCFHYLK 68 (70)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444454545555555556665553
No 45
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=20.35 E-value=83 Score=22.56 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 019301 304 LGVAYVFVGSSSIIISLVFMLLH 326 (343)
Q Consensus 304 Lgi~yivvG~i~~i~~i~f~~~~ 326 (343)
|-+.=++++++.|+++++.++.+
T Consensus 14 LrigGLi~A~vlfi~Gi~iils~ 36 (50)
T PF02038_consen 14 LRIGGLIFAGVLFILGILIILSG 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhccchHHHHHHHHHHHHHHHcC
Confidence 34444778888888888777654
Done!