Query 019301
Match_columns 343
No_of_seqs 119 out of 521
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 13:58:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 69.5 9.2 0.00031 25.7 4.9 32 301-332 7-38 (44)
2 2ks1_B Epidermal growth factor 63.0 5.2 0.00018 26.9 2.6 31 302-332 9-39 (44)
3 2jwa_A Receptor tyrosine-prote 41.1 33 0.0011 23.0 3.8 29 301-329 9-37 (44)
4 2k9y_A Ephrin type-A receptor 34.1 38 0.0013 21.6 3.2 20 304-323 13-32 (41)
5 2k1k_A Ephrin type-A receptor 34.0 63 0.0022 20.7 4.2 24 306-329 13-36 (38)
6 1afo_A Glycophorin A; integral 27.3 68 0.0023 20.9 3.4 25 305-329 11-35 (40)
7 2jo1_A Phospholemman; FXYD1, N 26.6 52 0.0018 24.2 3.1 26 303-328 15-40 (72)
8 2jp3_A FXYD domain-containing 22.3 34 0.0011 25.0 1.4 23 304-326 17-39 (67)
9 3mp7_B Preprotein translocase 21.5 92 0.0032 22.1 3.6 22 303-324 36-57 (61)
10 2zvv_Y Cyclin-dependent kinase 18.8 18 0.00062 21.2 -0.6 15 125-139 8-22 (26)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=69.46 E-value=9.2 Score=25.69 Aligned_cols=32 Identities=9% Similarity=0.026 Sum_probs=21.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 019301 301 NDFLGVAYVFVGSSSIIISLVFMLLHVKNPRP 332 (343)
Q Consensus 301 N~~Lgi~yivvG~i~~i~~i~f~~~~~~~pr~ 332 (343)
....+|+=-|+|++.+++.+++.+..+.+.|+
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 34456888888888887777666555555443
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=62.99 E-value=5.2 Score=26.90 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=20.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 019301 302 DFLGVAYVFVGSSSIIISLVFMLLHVKNPRP 332 (343)
Q Consensus 302 ~~Lgi~yivvG~i~~i~~i~f~~~~~~~pr~ 332 (343)
...+|+--|+|++.+++.+++++..+.+.|+
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcceEEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 3456777888888887777666555555544
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=41.10 E-value=33 Score=22.96 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=16.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhC
Q 019301 301 NDFLGVAYVFVGSSSIIISLVFMLLHVKN 329 (343)
Q Consensus 301 N~~Lgi~yivvG~i~~i~~i~f~~~~~~~ 329 (343)
.+...|+=.++|.+++++..+.++.++.+
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhheeh
Confidence 44556788888866555544444444443
No 4
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=34.05 E-value=38 Score=21.59 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 019301 304 LGVAYVFVGSSSIIISLVFM 323 (343)
Q Consensus 304 Lgi~yivvG~i~~i~~i~f~ 323 (343)
.+|+--+++++.++++++++
T Consensus 13 ~~I~~~vv~Gv~ll~~iv~~ 32 (41)
T 2k9y_A 13 LAVIGGVAVGVVLLLVLAGV 32 (41)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeehhHHHHHHHHHHHH
Confidence 34555566777765544443
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=34.05 E-value=63 Score=20.72 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 019301 306 VAYVFVGSSSIIISLVFMLLHVKN 329 (343)
Q Consensus 306 i~yivvG~i~~i~~i~f~~~~~~~ 329 (343)
|+=+|+|++.-++.++.++..+.+
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeeeehHHHHHHHHHHHHHHHHee
Confidence 555666666544433333333333
No 6
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=27.30 E-value=68 Score=20.87 Aligned_cols=25 Identities=8% Similarity=0.207 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC
Q 019301 305 GVAYVFVGSSSIIISLVFMLLHVKN 329 (343)
Q Consensus 305 gi~yivvG~i~~i~~i~f~~~~~~~ 329 (343)
-++.++.|.++-+++.++++.+..+
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~ 35 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777888888888888777553
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=26.64 E-value=52 Score=24.22 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 019301 303 FLGVAYVFVGSSSIIISLVFMLLHVK 328 (343)
Q Consensus 303 ~Lgi~yivvG~i~~i~~i~f~~~~~~ 328 (343)
.|-+.=||++++.|+++|++++..-.
T Consensus 15 tLRiGGLifA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 15 SLQIGGLVIAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchHHHHHHHHHHHHHHHcCcc
Confidence 34455578899999999998887743
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=22.34 E-value=34 Score=24.95 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 019301 304 LGVAYVFVGSSSIIISLVFMLLH 326 (343)
Q Consensus 304 Lgi~yivvG~i~~i~~i~f~~~~ 326 (343)
|-+.=||+++|.|+++|+.++..
T Consensus 17 LRigGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 17 LQLGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred heecchhhHHHHHHHHHHHHHcC
Confidence 44445778889999999888766
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=21.55 E-value=92 Score=22.09 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 019301 303 FLGVAYVFVGSSSIIISLVFML 324 (343)
Q Consensus 303 ~Lgi~yivvG~i~~i~~i~f~~ 324 (343)
..|+.++++|.+.+++-+++.+
T Consensus 36 ~~~iG~~i~G~iGf~Ikli~~~ 57 (61)
T 3mp7_B 36 ITGLGIILIGLIGMLIRIVGIL 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888877666654
No 10
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=18.77 E-value=18 Score=21.16 Aligned_cols=15 Identities=27% Similarity=0.715 Sum_probs=11.9
Q ss_pred EecchhhhhhhhhcC
Q 019301 125 QLDNYYQNHRRYVKS 139 (343)
Q Consensus 125 ~L~NFyQNHrry~~S 139 (343)
.|++|||.-||.+-+
T Consensus 8 s~TDFYhsKRRlvf~ 22 (26)
T 2zvv_Y 8 SMTDFYHSKRRLIFS 22 (26)
T ss_pred chhHHHhhhceEEEE
Confidence 478999999987644
Done!