Query 019301
Match_columns 343
No_of_seqs 119 out of 521
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 13:58:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019301.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019301hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x4la1 g.39.1.3 (A:8-36) Four 39.0 2.3 0.00017 24.4 -0.5 19 279-297 7-25 (29)
2 d1x68a1 g.39.1.3 (A:8-36) Four 34.4 4.8 0.00035 23.0 0.4 18 279-296 7-24 (29)
3 d2h80a1 a.60.1.3 (A:11-81) Del 16.7 16 0.0012 25.0 0.4 20 240-259 13-32 (71)
4 d2dkya1 a.60.1.3 (A:8-85) Dele 15.5 21 0.0015 24.8 0.7 19 240-258 18-36 (78)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 13.5 1.1E+02 0.0079 16.8 3.6 17 314-330 10-26 (30)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 11.8 1.9E+02 0.014 20.0 5.5 29 304-332 30-58 (100)
7 d1rh5b_ f.23.28.1 (B:) Preprot 10.9 1.2E+02 0.0088 19.5 3.5 20 304-323 30-49 (56)
8 d2vkwa2 b.1.2.1 (A:601-693) Ne 10.0 1.8E+02 0.013 18.9 4.6 32 262-294 61-92 (93)
9 d1q90m_ f.23.25.1 (M:) PetM su 9.8 1.6E+02 0.012 16.5 3.9 24 304-327 6-29 (34)
10 d2cuma1 b.1.2.1 (A:7-99) Tenas 9.1 2.3E+02 0.017 18.1 4.9 31 262-293 58-88 (93)
No 1
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.02 E-value=2.3 Score=24.41 Aligned_cols=19 Identities=21% Similarity=0.520 Sum_probs=16.5
Q ss_pred cCcccCceEEEEEEecccc
Q 019301 279 NTYSFGGKKKLVLSTSSWL 297 (343)
Q Consensus 279 pv~~F~G~K~ivlst~s~~ 297 (343)
|.+.+||.|+|.+....|-
T Consensus 7 PItg~gg~kyisFE~R~WH 25 (29)
T d1x4la1 7 PISGLGGTKYISFEERQWH 25 (29)
T ss_dssp CCCCSSSCSCEECSSCEEC
T ss_pred cccccCCceEEEeeccccc
Confidence 7889999999999888773
No 2
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.41 E-value=4.8 Score=23.00 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=15.6
Q ss_pred cCcccCceEEEEEEeccc
Q 019301 279 NTYSFGGKKKLVLSTSSW 296 (343)
Q Consensus 279 pv~~F~G~K~ivlst~s~ 296 (343)
|.+.++|.|+|-+...-|
T Consensus 7 PItg~gG~k~isFedR~W 24 (29)
T d1x68a1 7 PISGLTGAKFICFQDSQW 24 (29)
T ss_dssp CCCTTTTCCEEEETTEEE
T ss_pred cccccCCceEEEeehhhc
Confidence 788899999999887766
No 3
>d2h80a1 a.60.1.3 (A:11-81) Deleted in Liver Cancer 2, DLC2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.71 E-value=16 Score=24.97 Aligned_cols=20 Identities=25% Similarity=0.800 Sum_probs=16.8
Q ss_pred hHHHHhhcCCCCchhhhhhh
Q 019301 240 DLIVWMRTAALPSFRKMYGR 259 (343)
Q Consensus 240 ~FivWMr~Aalp~FrKLYg~ 259 (343)
+=--|.|.|+||.+-.||.-
T Consensus 13 eAC~WLraaGFpqYAqlyEd 32 (71)
T d2h80a1 13 EACDWLRAAGFPQYAQLYED 32 (71)
T ss_dssp HHHHHHHHTTCHHHHHTTTT
T ss_pred HHHHHHHHcCChHHHHHhhh
Confidence 34579999999999999963
No 4
>d2dkya1 a.60.1.3 (A:8-85) Deleted in liver cancer 1 protein, DLC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.46 E-value=21 Score=24.80 Aligned_cols=19 Identities=21% Similarity=0.816 Sum_probs=16.5
Q ss_pred hHHHHhhcCCCCchhhhhh
Q 019301 240 DLIVWMRTAALPSFRKMYG 258 (343)
Q Consensus 240 ~FivWMr~Aalp~FrKLYg 258 (343)
+=--|.|.|+||.+-.||.
T Consensus 18 eAC~WLraaGFpqYAqlyE 36 (78)
T d2dkya1 18 EACDWLRATGFPQYAQLYE 36 (78)
T ss_dssp HHHHHHHHHTCTTHHHHHH
T ss_pred HHHHHHHHcCChHHHHHhh
Confidence 3457999999999999996
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.50 E-value=1.1e+02 Score=16.80 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhCC
Q 019301 314 SSIIISLVFMLLHVKNP 330 (343)
Q Consensus 314 i~~i~~i~f~~~~~~~p 330 (343)
+..++++.|+.+.+.-|
T Consensus 10 fac~i~lfffaiffrep 26 (30)
T d2axtt1 10 FACIIALFFFAIFFREP 26 (30)
T ss_dssp HHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 45556776766665544
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.83 E-value=1.9e+02 Score=19.98 Aligned_cols=29 Identities=3% Similarity=0.015 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 019301 304 LGVAYVFVGSSSIIISLVFMLLHVKNPRP 332 (343)
Q Consensus 304 Lgi~yivvG~i~~i~~i~f~~~~~~~pr~ 332 (343)
..+..++++.+.++.++++.+...++.|+
T Consensus 30 ~~v~~i~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 30 GFILVIIAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 34455555666666666665555555554
No 7
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=10.95 E-value=1.2e+02 Score=19.54 Aligned_cols=20 Identities=15% Similarity=0.188 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 019301 304 LGVAYVFVGSSSIIISLVFM 323 (343)
Q Consensus 304 Lgi~yivvG~i~~i~~i~f~ 323 (343)
-|+-++++|.+.+++-+++.
T Consensus 30 ~~iG~~i~G~IGf~I~li~~ 49 (56)
T d1rh5b_ 30 TALGISLLGIIGYIIHVPAT 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35556667777776655554
No 8
>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.98 E-value=1.8e+02 Score=18.93 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=19.9
Q ss_pred cCCCCCceEEEEEEeeecCcccCceEEEEEEec
Q 019301 262 EDLDADDVIAVHLMNNYNTYSFGGKKKLVLSTS 294 (343)
Q Consensus 262 ~~l~~g~~y~v~I~nnypv~~F~G~K~ivlst~ 294 (343)
.+|.+|..|.|.|.-. +..-.+---.+++.|+
T Consensus 61 ~~L~p~t~Y~~~V~A~-N~~G~s~ps~~~~~T~ 92 (93)
T d2vkwa2 61 KSLDWNAEYEVYVVAE-NQQGKSKAAHFVFRTA 92 (93)
T ss_dssp CSCCTTCEEEEEEEEE-ETTEECCCEEEEEECC
T ss_pred eccccceEEEEEEEEE-cCCCCcCCEeEEEEec
Confidence 4799999999999755 3333322234555443
No 9
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=9.76 E-value=1.6e+02 Score=16.54 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 019301 304 LGVAYVFVGSSSIIISLVFMLLHV 327 (343)
Q Consensus 304 Lgi~yivvG~i~~i~~i~f~~~~~ 327 (343)
-|.++..+|.-.+-+++-|.+++.
T Consensus 6 agta~tmig~tl~glaigfvllrv 29 (34)
T d1q90m_ 6 AGTALTMVGMTLVGLAIGFVLLRV 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhheee
Confidence 467777788777777777776653
No 10
>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.12 E-value=2.3e+02 Score=18.13 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=19.1
Q ss_pred cCCCCCceEEEEEEeeecCcccCceEEEEEEe
Q 019301 262 EDLDADDVIAVHLMNNYNTYSFGGKKKLVLST 293 (343)
Q Consensus 262 ~~l~~g~~y~v~I~nnypv~~F~G~K~ivlst 293 (343)
.+|.||..|.|.|.-.-. ...+..-...++|
T Consensus 58 ~~L~p~t~Y~~~V~a~~~-~g~s~~~~~~~tT 88 (93)
T d2cuma1 58 LGLFPSTSYNARLQAMWG-QSLLPPVSTSFTT 88 (93)
T ss_dssp CSCCTTCEEEEEEEEEBT-TBCCCCEEEEEEC
T ss_pred eCccCCCEEEEEEEEEeC-CCCCCCEEEEEEe
Confidence 479999999999975422 2222223444444
Done!