BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019302
         (343 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K7H|B Chain B, Crystal Structure Of The E95k Mutant Of The Indian
           Hedgehog N-Terminal Signalling Domain
          Length = 187

 Score = 29.3 bits (64), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 28/119 (23%)

Query: 252 ATSDDKYKDGGREKGKDYVFNDEKDKAGGRDTKQHRRDKDGSV---MRNENP-------- 300
           A S +++K+       D +F DEK+    R   Q  +D+  S+   + N+ P        
Sbjct: 57  ARSSERFKELTPNYNPDIIFKDEKNTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTE 116

Query: 301 ---------KTYLNYDGRKVN--------NEYDYYSPLKYSNGIDQMFSDENPNSYCSI 342
                    +  L+Y+GR V+        N+Y   + L    G D ++ +   + +CS+
Sbjct: 117 GWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSV 175


>pdb|3RHF|A Chain A, Crystal Structure Of Polyphosphate Kinase 2 From
           Arthrobacter Aurescens Tc1
 pdb|3RHF|B Chain B, Crystal Structure Of Polyphosphate Kinase 2 From
           Arthrobacter Aurescens Tc1
 pdb|3RHF|C Chain C, Crystal Structure Of Polyphosphate Kinase 2 From
           Arthrobacter Aurescens Tc1
 pdb|3RHF|D Chain D, Crystal Structure Of Polyphosphate Kinase 2 From
           Arthrobacter Aurescens Tc1
          Length = 289

 Score = 28.5 bits (62), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 54  RVDNQISEEKLKRKKKIHRNDIGSKQTEEGTYVMKIKLCCDSCNQKLRKIMKI 106
           RV       +L+R+     ND  S+ TE+GT ++K+ L      QK R I ++
Sbjct: 150 RVHGWADAAELERRYAA-INDFESRLTEQGTTIVKVXLNISKDEQKKRLIARL 201


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.130    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,449,196
Number of Sequences: 62578
Number of extensions: 469282
Number of successful extensions: 1014
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 32
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)