BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019302
         (343 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q99250|SCN2A_HUMAN Sodium channel protein type 2 subunit alpha OS=Homo sapiens GN=SCN2A
            PE=1 SV=3
          Length = 2005

 Score = 37.0 bits (84), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 52/104 (50%), Gaps = 1/104 (0%)

Query: 185  KKDDGNNATIDKKYRGAITVYEKFEGPSMVYKKNEGIDAVDEKTKGNATVDRKDKGTTPT 244
            K+++ +   I + YR  + + +K +  S +YKK++G +      K +  +D+ ++ +TP 
Sbjct: 1903 KQEEVSAIIIQRAYRRYL-LKQKVKKVSSIYKKDKGKECDGTPIKEDTLIDKLNENSTPE 1961

Query: 245  DAKSTGSATSDDKYKDGGREKGKDYVFNDEKDKAGGRDTKQHRR 288
                T S TS   Y    + + + +  +  + +  G+D ++ ++
Sbjct: 1962 KTDMTPSTTSPPSYDSVTKPEKEKFEKDKSEKEDKGKDIRESKK 2005


>sp|B9DNE5|RUVA_STACT Holliday junction ATP-dependent DNA helicase RuvA OS=Staphylococcus
           carnosus (strain TM300) GN=ruvA PE=3 SV=1
          Length = 201

 Score = 36.2 bits (82), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 37/182 (20%)

Query: 134 SYIKDELKKDVVIIFPAEVVIPTKKDDGAAYKKEKDAGTTRKKDRDDKATNKKDDGNNAT 193
           +YIK +L +    +FP  VV+ T   +G  Y+ +                      N+  
Sbjct: 3   AYIKGKLSQ----LFPTHVVVET---NGVGYEIQTP--------------------NSYR 35

Query: 194 IDKKYRGAITVYEKFEGPSMVYKKNEGI--DAVDEKTKGNATVDRKDKGTTPTDAKSTGS 251
             + Y+  +T+Y      S+V +++  +    + E+ KG      K  G  P  A +  +
Sbjct: 36  FQQYYQQEVTIYT-----SLVVREDAQLLYGFMSEEEKGMFLSLNKVTGIGPKSALAILA 90

Query: 252 ATSDDKYKDGGREKGKDYVFNDEKDKAGGRDTKQHRRDKDGSV-MRNENPKTYLNYDGRK 310
           A++ ++ K G   + + Y+   +    G +  +Q   D  G V +  ENP+T LN++G +
Sbjct: 91  ASTPNEVKIGIENENETYL--TKFPGIGKKTARQIILDLKGKVQITEENPETLLNFEGSE 148

Query: 311 VN 312
            N
Sbjct: 149 SN 150


>sp|P04775|SCN2A_RAT Sodium channel protein type 2 subunit alpha OS=Rattus norvegicus
            GN=Scn2a PE=1 SV=1
          Length = 2005

 Score = 35.4 bits (80), Expect = 0.62,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 51/104 (49%), Gaps = 1/104 (0%)

Query: 185  KKDDGNNATIDKKYRGAITVYEKFEGPSMVYKKNEGIDAVDEKTKGNATVDRKDKGTTPT 244
            K+++ +   I + YR  + + +K +  S +YKK++G +      K +   D+ ++ +TP 
Sbjct: 1903 KQEEVSAIVIQRAYRRYL-LKQKVKKVSSIYKKDKGKEDEGTPIKEDIITDKLNENSTPE 1961

Query: 245  DAKSTGSATSDDKYKDGGREKGKDYVFNDEKDKAGGRDTKQHRR 288
                T S TS   Y    + + + +  +  + +  G+D ++ ++
Sbjct: 1962 KTDVTPSTTSPPSYDSVTKPEKEKFEKDKSEKEDKGKDIRESKK 2005


>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
           OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
          Length = 153

 Score = 31.6 bits (70), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 17/119 (14%)

Query: 62  EKLKRKKKIHRNDIGSKQTEEGTYVMKIKLCCDSCNQKLRKIMK-IKGLETVNMDVQEDL 120
            K+K++K++        QT E    +K+K+ C+ C +K+R+ ++ +KG+ +V ++ +   
Sbjct: 17  HKIKKRKQL--------QTVE----IKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHK 64

Query: 121 VKVKGTVDITEVRSYIKDELKKDVVI--IFPAEVVIPTKKDDGAAYKKEKDAGTTRKKD 177
           V V G VD  +V + +     K V +    P +VV          Y K+  +G  R+ D
Sbjct: 65  VTVVGYVDPNKVVARMSHRTGKKVELWPYVPYDVV--AHPYAAGVYDKKAPSGYVRRVD 121


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.130    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,566,201
Number of Sequences: 539616
Number of extensions: 6339937
Number of successful extensions: 19423
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 293
Number of HSP's that attempted gapping in prelim test: 18652
Number of HSP's gapped (non-prelim): 839
length of query: 343
length of database: 191,569,459
effective HSP length: 118
effective length of query: 225
effective length of database: 127,894,771
effective search space: 28776323475
effective search space used: 28776323475
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)