Query 019302
Match_columns 343
No_of_seqs 251 out of 1047
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 08:21:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1603 Copper chaperone [Inor 99.6 7E-15 1.5E-19 113.6 8.6 68 80-147 2-70 (73)
2 PF00403 HMA: Heavy-metal-asso 99.2 5.9E-11 1.3E-15 86.9 7.6 56 86-142 1-61 (62)
3 COG2608 CopZ Copper chaperone 98.9 7.2E-09 1.6E-13 80.0 7.9 62 83-145 2-68 (71)
4 KOG4656 Copper chaperone for s 98.8 1E-08 2.3E-13 96.0 8.1 64 83-147 7-71 (247)
5 KOG1603 Copper chaperone [Inor 98.6 8.4E-08 1.8E-12 74.2 5.8 44 2-45 28-71 (73)
6 PRK10671 copA copper exporting 98.1 5.2E-05 1.1E-09 81.1 13.7 133 2-144 27-161 (834)
7 PLN02957 copper, zinc superoxi 97.9 9.3E-05 2E-09 69.0 9.6 65 82-147 5-70 (238)
8 PRK10671 copA copper exporting 97.7 9.2E-05 2E-09 79.2 7.6 63 83-148 3-67 (834)
9 PF00403 HMA: Heavy-metal-asso 96.4 0.0075 1.6E-07 44.0 5.1 37 2-39 22-61 (62)
10 TIGR00003 copper ion binding p 96.3 0.039 8.4E-07 35.9 7.8 53 84-136 3-60 (68)
11 COG2217 ZntA Cation transport 96.1 0.014 3E-07 63.0 7.1 59 84-144 3-67 (713)
12 KOG0207 Cation transport ATPas 96.0 0.05 1.1E-06 60.3 10.7 111 2-144 93-211 (951)
13 KOG0207 Cation transport ATPas 95.4 0.13 2.9E-06 57.1 11.4 113 2-147 18-137 (951)
14 KOG4656 Copper chaperone for s 91.9 0.27 5.8E-06 47.1 5.0 45 2-47 30-74 (247)
15 PRK11033 zntA zinc/cadmium/mer 91.2 0.38 8.3E-06 51.8 5.9 61 83-144 53-116 (741)
16 COG2608 CopZ Copper chaperone 85.7 1.6 3.5E-05 33.7 4.6 42 2-44 26-70 (71)
17 PLN02957 copper, zinc superoxi 79.3 5.5 0.00012 37.4 6.3 47 2-49 29-75 (238)
18 TIGR02052 MerP mercuric transp 67.7 25 0.00053 25.5 6.2 53 84-136 24-81 (92)
19 PF01883 DUF59: Domain of unkn 54.5 19 0.00041 27.2 3.6 32 83-114 34-72 (72)
20 PF09510 Rtt102p: Rtt102p-like 54.4 8.6 0.00019 34.0 2.0 31 293-323 1-31 (130)
21 PRK13748 putative mercuric red 53.8 60 0.0013 33.2 8.1 58 86-144 3-64 (561)
22 cd00371 HMA Heavy-metal-associ 47.5 52 0.0011 18.6 6.8 47 90-136 6-55 (63)
23 PF04468 PSP1: PSP1 C-terminal 37.6 1.4E+02 0.0031 24.1 6.4 54 93-147 28-86 (88)
24 PRK11023 outer membrane lipopr 36.1 3.4E+02 0.0074 24.8 9.7 89 8-133 69-168 (191)
25 PF14437 MafB19-deam: MafB19-l 29.2 1E+02 0.0022 28.0 4.7 40 83-123 100-142 (146)
26 PRK06418 transcription elongat 26.7 3E+02 0.0064 25.4 7.3 66 82-147 5-96 (166)
27 PHA01634 hypothetical protein 23.1 33 0.00072 31.3 0.5 37 11-49 25-62 (156)
28 PLN02804 chalcone isomerase 21.9 82 0.0018 30.0 2.9 35 5-40 28-63 (206)
29 COG1888 Uncharacterized protei 20.8 3.9E+02 0.0085 23.0 6.3 70 82-154 5-84 (97)
30 PF05813 Orthopox_F7: Orthopox 20.2 21 0.00046 29.0 -1.2 19 185-203 60-78 (82)
No 1
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.58 E-value=7e-15 Score=113.55 Aligned_cols=68 Identities=29% Similarity=0.571 Sum_probs=62.8
Q ss_pred CcceEEEEEEeccchhHHHHHHhh-hcCCCceEEEEEcCCCEEEEEeecCHHHHHHHHHHHhCCceEEe
Q 019302 80 TEEGTYVMKIKLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVII 147 (343)
Q Consensus 80 p~~~TVvLKV~MhCeGCa~KIkKA-~kikGVeSVeVDlkkqkVTVtGtVDp~kLveaLrKKtgK~AeIV 147 (343)
+..++.+++|+|||+||+.+|++. +.++||+++.+|.++++|||.|++||..|++.|+++.++++.+|
T Consensus 2 ~~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~ 70 (73)
T KOG1603|consen 2 PPIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELW 70 (73)
T ss_pred CCccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEe
Confidence 345789999999999999999999 99999999999999999999999999999999997655888776
No 2
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.20 E-value=5.9e-11 Score=86.89 Aligned_cols=56 Identities=25% Similarity=0.501 Sum_probs=51.0
Q ss_pred EEEE-eccchhHHHHHHhh-hcCCCceEEEEEcCCCEEEEEeecC---HHHHHHHHHHHhCC
Q 019302 86 VMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVD---ITEVRSYIKDELKK 142 (343)
Q Consensus 86 vLKV-~MhCeGCa~KIkKA-~kikGVeSVeVDlkkqkVTVtGtVD---p~kLveaLrKKtgK 142 (343)
+|+| +|+|++|+++|+++ .+++||.++.+|+.+++|+|.+..+ +.+|.++|+ ++|.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhCc
Confidence 6889 99999999999999 9999999999999999999998755 599999997 5664
No 3
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.89 E-value=7.2e-09 Score=80.03 Aligned_cols=62 Identities=19% Similarity=0.418 Sum_probs=53.7
Q ss_pred eEEEEEE-eccchhHHHHHHhh-hcCCCceEEEEEcCCCEEE--EEe-ecCHHHHHHHHHHHhCCceE
Q 019302 83 GTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVK--VKG-TVDITEVRSYIKDELKKDVV 145 (343)
Q Consensus 83 ~TVvLKV-~MhCeGCa~KIkKA-~kikGVeSVeVDlkkqkVT--VtG-tVDp~kLveaLrKKtgK~Ae 145 (343)
+++.|+| +|+|++|+..|.++ ..++||.+|.||++.+.++ +.+ .++..+|..+|. .+|-.+.
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aGy~~~ 68 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAGYKVE 68 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcCCCee
Confidence 4688999 99999999999999 9999999999999995555 456 699999999996 5777663
No 4
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.82 E-value=1e-08 Score=95.96 Aligned_cols=64 Identities=19% Similarity=0.476 Sum_probs=60.8
Q ss_pred eEEEEEEeccchhHHHHHHhh-hcCCCceEEEEEcCCCEEEEEeecCHHHHHHHHHHHhCCceEEe
Q 019302 83 GTYVMKIKLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVII 147 (343)
Q Consensus 83 ~TVvLKV~MhCeGCa~KIkKA-~kikGVeSVeVDlkkqkVTVtGtVDp~kLveaLrKKtgK~AeIV 147 (343)
-+++|.|.|||++|+..|+.+ ..++||.+|+||++++.|.|.+++.+..|...|+ -|||+|.|.
T Consensus 7 ~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le-~tGr~Avl~ 71 (247)
T KOG4656|consen 7 YEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLE-NTGRDAVLR 71 (247)
T ss_pred eeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHH-hhChheEEe
Confidence 468999999999999999999 9999999999999999999999999999999996 799999666
No 5
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.60 E-value=8.4e-08 Score=74.23 Aligned_cols=44 Identities=34% Similarity=0.375 Sum_probs=40.8
Q ss_pred CCCCccEEEeecCCCeEEEEEecCHHHHHHHHHHHhCCceEEec
Q 019302 2 ADAGVKRVKGDSNSIKLEVTGMVDPWKIQELVEKETKKKVELIF 45 (343)
Q Consensus 2 ~leGVesV~vD~k~~KVTVtG~VDP~kVv~rLrKKTgKkaELVS 45 (343)
.++||++|.+|+++++|||+|++||..|+++|++++++++++|.
T Consensus 28 ~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~~ 71 (73)
T KOG1603|consen 28 KLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELWK 71 (73)
T ss_pred ccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEec
Confidence 68999999999999999999999999999999976669999885
No 6
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.07 E-value=5.2e-05 Score=81.08 Aligned_cols=133 Identities=10% Similarity=0.183 Sum_probs=93.4
Q ss_pred CCCCccEEEeecCCCeEEEEEecCHHHHHHHHHHHhCCceEEecCCCcchhhcccchhhHHHHHHhhhcCCCCCCCCCCc
Q 019302 2 ADAGVKRVKGDSNSIKLEVTGMVDPWKIQELVEKETKKKVELIFPLTQMAAKRVDNQISEEKLKRKKKIHRNDIGSKQTE 81 (343)
Q Consensus 2 ~leGVesV~vD~k~~KVTVtG~VDP~kVv~rLrKKTgKkaELVSp~Pkk~e~k~e~~~~~~kK~e~~k~~~kk~e~kkp~ 81 (343)
+++||.+|.+|. ++.+|.+.+++..+...++ .+|-.+++.++...+....... ..+.... .. ..... +...
T Consensus 27 ~~~gv~~v~v~~--~~~~v~~~~~~~~i~~~i~-~~Gy~~~~~~~~~~~~~~~~~~-~~~~~~~--~~--~~~~~-~~~~ 97 (834)
T PRK10671 27 QRPDVEQADVSI--TEAHVTGTASAEALIETIK-QAGYDASVSHPKAKPLTESSIP-SEALTAA--SE--ELPAA-TADD 97 (834)
T ss_pred cCCCcceEEEee--eEEEEEecCCHHHHHHHHH-hcCCcccccccccccccccccC-chhhhhh--hh--hcccc-ccCc
Confidence 579999999999 4677888899999999997 7999999986433221111100 0000000 00 00000 0011
Q ss_pred ceEEEEEE-eccchhHHHHHHhh-hcCCCceEEEEEcCCCEEEEEeecCHHHHHHHHHHHhCCce
Q 019302 82 EGTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDV 144 (343)
Q Consensus 82 ~~TVvLKV-~MhCeGCa~KIkKA-~kikGVeSVeVDlkkqkVTVtGtVDp~kLveaLrKKtgK~A 144 (343)
..++.|.| +|||.+|+..|.+. ..++||.++.+++..+++.|.+..++..+...+. .+|..+
T Consensus 98 ~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~-~~Gy~a 161 (834)
T PRK10671 98 DDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVE-KAGYGA 161 (834)
T ss_pred CceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHH-hcCCCc
Confidence 23577888 99999999999999 9999999999999999999987788888888875 567655
No 7
>PLN02957 copper, zinc superoxide dismutase
Probab=97.85 E-value=9.3e-05 Score=68.96 Aligned_cols=65 Identities=15% Similarity=0.420 Sum_probs=58.7
Q ss_pred ceEEEEEEeccchhHHHHHHhh-hcCCCceEEEEEcCCCEEEEEeecCHHHHHHHHHHHhCCceEEe
Q 019302 82 EGTYVMKIKLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVII 147 (343)
Q Consensus 82 ~~TVvLKV~MhCeGCa~KIkKA-~kikGVeSVeVDlkkqkVTVtGtVDp~kLveaLrKKtgK~AeIV 147 (343)
++.+.|.|+|+|+.|+..|.++ ..++||.++.+++..++++|.+.+++..|+..|+ .++..++++
T Consensus 5 ~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe-~~Gy~a~~~ 70 (238)
T PLN02957 5 ELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALE-QTGRKARLI 70 (238)
T ss_pred cEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHH-HcCCcEEEe
Confidence 3667899999999999999999 9999999999999999999998889999999986 788888555
No 8
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.68 E-value=9.2e-05 Score=79.24 Aligned_cols=63 Identities=17% Similarity=0.331 Sum_probs=56.3
Q ss_pred eEEEEEE-eccchhHHHHHHhh-hcCCCceEEEEEcCCCEEEEEeecCHHHHHHHHHHHhCCceEEec
Q 019302 83 GTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVIIF 148 (343)
Q Consensus 83 ~TVvLKV-~MhCeGCa~KIkKA-~kikGVeSVeVDlkkqkVTVtGtVDp~kLveaLrKKtgK~AeIVs 148 (343)
++++|.| +|+|.+|+.+|+++ .+++||.++.||+ ++++|.+..++..|...|+ .+|..+++.+
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~--~~~~v~~~~~~~~i~~~i~-~~Gy~~~~~~ 67 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSI--TEAHVTGTASAEALIETIK-QAGYDASVSH 67 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEee--eEEEEEecCCHHHHHHHHH-hcCCcccccc
Confidence 5789999 99999999999999 9999999999999 4677778899999999996 7899996653
No 9
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=96.40 E-value=0.0075 Score=44.00 Aligned_cols=37 Identities=32% Similarity=0.188 Sum_probs=32.5
Q ss_pred CCCCccEEEeecCCCeEEEEEec---CHHHHHHHHHHHhCC
Q 019302 2 ADAGVKRVKGDSNSIKLEVTGMV---DPWKIQELVEKETKK 39 (343)
Q Consensus 2 ~leGVesV~vD~k~~KVTVtG~V---DP~kVv~rLrKKTgK 39 (343)
+++||.+|.+|...++|+|.+.. ++.+|.+.|+ ++|.
T Consensus 22 ~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~Gy 61 (62)
T PF00403_consen 22 KLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAGY 61 (62)
T ss_dssp TSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTTS
T ss_pred cCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhCc
Confidence 68999999999999999999974 4599999997 5764
No 10
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=96.34 E-value=0.039 Score=35.88 Aligned_cols=53 Identities=19% Similarity=0.441 Sum_probs=44.8
Q ss_pred EEEEEE-eccchhHHHHHHhh-hcCCCceEEEEEcCCCEEEEEe---ecCHHHHHHHH
Q 019302 84 TYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKG---TVDITEVRSYI 136 (343)
Q Consensus 84 TVvLKV-~MhCeGCa~KIkKA-~kikGVeSVeVDlkkqkVTVtG---tVDp~kLveaL 136 (343)
++.+.| +|+|..|+..|... ..+.|+..+.+++....+.|.- ..+...+...+
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAI 60 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 467889 99999999999999 9999999999999999988873 35667776665
No 11
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.06 E-value=0.014 Score=62.97 Aligned_cols=59 Identities=14% Similarity=0.355 Sum_probs=51.2
Q ss_pred EEEEEE-eccchhHHHHHHhh-hcCCCceEEEEEcCCCEEEEEe---ecC-HHHHHHHHHHHhCCce
Q 019302 84 TYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKG---TVD-ITEVRSYIKDELKKDV 144 (343)
Q Consensus 84 TVvLKV-~MhCeGCa~KIkKA-~kikGVeSVeVDlkkqkVTVtG---tVD-p~kLveaLrKKtgK~A 144 (343)
++.|.| +|||..|+.+|. + .+++||.++.|++.+.+++|.. ..+ +..+...++ ..|-.+
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~-~~gy~~ 67 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE-KAGYSA 67 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHH-hcCccc
Confidence 578999 999999999999 9 9999999999999999999984 456 678888885 566655
No 12
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=95.95 E-value=0.05 Score=60.26 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=87.5
Q ss_pred CCCCccEEEeecCCCeEEEEE---ecCHHHHHHHHHHHhCCceEEecCCCcchhhcccchhhHHHHHHhhhcCCCCCCCC
Q 019302 2 ADAGVKRVKGDSNSIKLEVTG---MVDPWKIQELVEKETKKKVELIFPLTQMAAKRVDNQISEEKLKRKKKIHRNDIGSK 78 (343)
Q Consensus 2 ~leGVesV~vD~k~~KVTVtG---~VDP~kVv~rLrKKTgKkaELVSp~Pkk~e~k~e~~~~~~kK~e~~k~~~kk~e~k 78 (343)
+++||+++.+-.-..+-+|.= ...|..+.+.++ ..|=.++++.-.-. .
T Consensus 93 ~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie-~~gf~a~~i~~~~~------~---------------------- 143 (951)
T KOG0207|consen 93 KIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE-DLGFSAELIESVNG------N---------------------- 143 (951)
T ss_pred ccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-hcCccceehhcccC------C----------------------
Confidence 578999999988888888763 357889999998 67767776642200 0
Q ss_pred CCcceEEEEEE-eccchhHHHHHHhh-hcCCCceEEEEEcCCCEEEEE---eecCHHHHHHHHHHHhCCce
Q 019302 79 QTEEGTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK---GTVDITEVRSYIKDELKKDV 144 (343)
Q Consensus 79 kp~~~TVvLKV-~MhCeGCa~KIkKA-~kikGVeSVeVDlkkqkVTVt---GtVDp~kLveaLrKKtgK~A 144 (343)
.-.+++|.| +|.|.+|+.+|.+. .+++||.++.+++..+++.|. -..-|-.+++.|. .++-.+
T Consensus 144 --~~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie-~~~~~~ 211 (951)
T KOG0207|consen 144 --SNQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIE-ETGFEA 211 (951)
T ss_pred --CCCcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHH-hhcccc
Confidence 004589999 99999999999999 999999999999999999997 3467788888886 556555
No 13
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=95.42 E-value=0.13 Score=57.09 Aligned_cols=113 Identities=18% Similarity=0.309 Sum_probs=94.4
Q ss_pred CCCCccEEEeecCCCeEEEEE--ecCHHHHHHHHHHHhCCceEEecCCCcchhhcccchhhHHHHHHhhhcCCCCCCCCC
Q 019302 2 ADAGVKRVKGDSNSIKLEVTG--MVDPWKIQELVEKETKKKVELIFPLTQMAAKRVDNQISEEKLKRKKKIHRNDIGSKQ 79 (343)
Q Consensus 2 ~leGVesV~vD~k~~KVTVtG--~VDP~kVv~rLrKKTgKkaELVSp~Pkk~e~k~e~~~~~~kK~e~~k~~~kk~e~kk 79 (343)
..+||.++.+...++..+|.= .++|..+.+++. =+|-.+++++..-.
T Consensus 18 ~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ie-d~gf~~~~~~~~~~------------------------------ 66 (951)
T KOG0207|consen 18 RKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIE-DMGFEASLLSDSEI------------------------------ 66 (951)
T ss_pred cCCCceeEEEEeccccceEEEeeccCHHHHHHHhh-cccceeeecccCcc------------------------------
Confidence 578999999999999888864 589999999997 58888888863311
Q ss_pred CcceEEEEEE-eccchhHHHHHHhh-hcCCCceEEEEEcCCCEEEEE---eecCHHHHHHHHHHHhCCceEEe
Q 019302 80 TEEGTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK---GTVDITEVRSYIKDELKKDVVII 147 (343)
Q Consensus 80 p~~~TVvLKV-~MhCeGCa~KIkKA-~kikGVeSVeVDlkkqkVTVt---GtVDp~kLveaLrKKtgK~AeIV 147 (343)
...+-.|.| +|+|--|.+.|.+. +++.||+++.|-+-.....|. ....+..+++.+. .+|-.++++
T Consensus 67 -~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie-~~gf~a~~i 137 (951)
T KOG0207|consen 67 -TASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE-DLGFSAELI 137 (951)
T ss_pred -ccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-hcCccceeh
Confidence 113578999 99999999999999 999999999999999999887 3477899999997 778888655
No 14
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=91.92 E-value=0.27 Score=47.10 Aligned_cols=45 Identities=24% Similarity=0.209 Sum_probs=41.7
Q ss_pred CCCCccEEEeecCCCeEEEEEecCHHHHHHHHHHHhCCceEEecCC
Q 019302 2 ADAGVKRVKGDSNSIKLEVTGMVDPWKIQELVEKETKKKVELIFPL 47 (343)
Q Consensus 2 ~leGVesV~vD~k~~KVTVtG~VDP~kVv~rLrKKTgKkaELVSp~ 47 (343)
+++||++|.+|.++|-|.|-+.+-|..|...|+ -||++|-|.-.+
T Consensus 30 ~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le-~tGr~Avl~G~G 74 (247)
T KOG4656|consen 30 GVPGINSVEVDLEQQIVSVETSVPPSEIQNTLE-NTGRDAVLRGAG 74 (247)
T ss_pred cCCCcceEEEEhhhcEEEEEccCChHHHHHHHH-hhChheEEecCC
Confidence 578999999999999999999999999999997 699999998754
No 15
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=91.17 E-value=0.38 Score=51.82 Aligned_cols=61 Identities=20% Similarity=0.369 Sum_probs=45.8
Q ss_pred eEEEEEE-eccchhHHHHHHhh-hcCCCceEEEEEcCCCEEEEEeecC-HHHHHHHHHHHhCCce
Q 019302 83 GTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVD-ITEVRSYIKDELKKDV 144 (343)
Q Consensus 83 ~TVvLKV-~MhCeGCa~KIkKA-~kikGVeSVeVDlkkqkVTVtGtVD-p~kLveaLrKKtgK~A 144 (343)
+++.+.| +|||.+|+..|.++ ..++||.++.+++...++.|.-.-+ ...+...+. .+|-.+
T Consensus 53 ~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~-~~Gy~a 116 (741)
T PRK11033 53 TRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQ-KAGFSL 116 (741)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHH-hccccc
Confidence 4677889 99999999999999 9999999999999999888763211 144445543 345433
No 16
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=85.69 E-value=1.6 Score=33.69 Aligned_cols=42 Identities=31% Similarity=0.272 Sum_probs=33.5
Q ss_pred CCCCccEEEeecCC--CeEEEEE-ecCHHHHHHHHHHHhCCceEEe
Q 019302 2 ADAGVKRVKGDSNS--IKLEVTG-MVDPWKIQELVEKETKKKVELI 44 (343)
Q Consensus 2 ~leGVesV~vD~k~--~KVTVtG-~VDP~kVv~rLrKKTgKkaELV 44 (343)
.++||.+|++|+.. ..|++.+ .++...|.+.|. .+|=.+..+
T Consensus 26 ~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aGy~~~~~ 70 (71)
T COG2608 26 EVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAGYKVEEI 70 (71)
T ss_pred cCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcCCCeeec
Confidence 57899999999999 5555556 699999999997 577666543
No 17
>PLN02957 copper, zinc superoxide dismutase
Probab=79.30 E-value=5.5 Score=37.41 Aligned_cols=47 Identities=26% Similarity=0.198 Sum_probs=41.0
Q ss_pred CCCCccEEEeecCCCeEEEEEecCHHHHHHHHHHHhCCceEEecCCCc
Q 019302 2 ADAGVKRVKGDSNSIKLEVTGMVDPWKIQELVEKETKKKVELIFPLTQ 49 (343)
Q Consensus 2 ~leGVesV~vD~k~~KVTVtG~VDP~kVv~rLrKKTgKkaELVSp~Pk 49 (343)
.++||.++.+|+..++++|.+.+++..|++.|+ .++..+++++..++
T Consensus 29 ~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe-~~Gy~a~~~~~~~~ 75 (238)
T PLN02957 29 TLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALE-QTGRKARLIGQGDP 75 (238)
T ss_pred cCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHH-HcCCcEEEecCCCc
Confidence 578999999999999999999889999999997 68888988875433
No 18
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=67.67 E-value=25 Score=25.50 Aligned_cols=53 Identities=13% Similarity=0.374 Sum_probs=38.7
Q ss_pred EEEEEE-eccchhHHHHHHhh-hcCCCceEEEEEcCCCEEEEE--e-ecCHHHHHHHH
Q 019302 84 TYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK--G-TVDITEVRSYI 136 (343)
Q Consensus 84 TVvLKV-~MhCeGCa~KIkKA-~kikGVeSVeVDlkkqkVTVt--G-tVDp~kLveaL 136 (343)
++.+.+ +|+|..|...+... ....|+....++.....+.+. + ..+...+...+
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEAT 81 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHH
Confidence 345667 89999999999988 899999888888877775554 1 24555554444
No 19
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=54.55 E-value=19 Score=27.16 Aligned_cols=32 Identities=19% Similarity=0.519 Sum_probs=21.7
Q ss_pred eEEEEEEeccchhHH------HHHHhh-hcCCCceEEEE
Q 019302 83 GTYVMKIKLCCDSCN------QKLRKI-MKIKGLETVNM 114 (343)
Q Consensus 83 ~TVvLKV~MhCeGCa------~KIkKA-~kikGVeSVeV 114 (343)
.++.|.+.+.+.+|. ..|+.+ ..++||.+|.|
T Consensus 34 ~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 34 GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 467777766666665 566777 88999999976
No 20
>PF09510 Rtt102p: Rtt102p-like transcription regulator protein; InterPro: IPR018304 Rtt102p (Regulator of Ty1 Transposition Protein 102) is a transcription regulator protein found in fungi that appears to be integrally associated with both the Swi-Snf and the RSC chromatin remodelling complexes, []. RSC is involved in transcription regulation and nucleosome positioning, and is responsible for the transfer of a histone octamer from a nucleosome core particle to naked DNA. The reaction requires ATP and involves an activated RSC-nucleosome intermediate. Remodelling reaction also involves DNA translocation, DNA twist and conformational change. As a reconfigurer of centromeric and flanking nucleosomes, RSC complex is required both for proper kinetochore function in chromosome segregation and, via a PKC1-dependent signalling pathway, for organisation of the cellular cytoskeleton. It is a probable component of the SWI/SNF complex, an ATP-dependent chromatin-remodelling complex, is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.
Probab=54.42 E-value=8.6 Score=33.96 Aligned_cols=31 Identities=32% Similarity=0.592 Sum_probs=26.9
Q ss_pred CccccCCCceeeccCCccccccccccCcccc
Q 019302 293 SVMRNENPKTYLNYDGRKVNNEYDYYSPLKY 323 (343)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (343)
|+|+.-|--.|++-...++.=+||+|+|.+-
T Consensus 1 sli~~AN~~~y~~~~~~~~~W~yDWytP~k~ 31 (130)
T PF09510_consen 1 SLIERANKSGYGNSADKKIHWKYDWYTPSKS 31 (130)
T ss_pred ChhHhccccccccCCCCceeeEEeccccccc
Confidence 5778888888998888889999999999983
No 21
>PRK13748 putative mercuric reductase; Provisional
Probab=53.78 E-value=60 Score=33.19 Aligned_cols=58 Identities=16% Similarity=0.354 Sum_probs=43.7
Q ss_pred EEEE-eccchhHHHHHHhh-hcCCCceEEEEEcCCCEEEEEe--ecCHHHHHHHHHHHhCCce
Q 019302 86 VMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKG--TVDITEVRSYIKDELKKDV 144 (343)
Q Consensus 86 vLKV-~MhCeGCa~KIkKA-~kikGVeSVeVDlkkqkVTVtG--tVDp~kLveaLrKKtgK~A 144 (343)
.+.+ +|+|..|...+... ..++|+....+++....+.+.. ..+...+...+. ..+..+
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~-~~g~~~ 64 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVA-GLGYRA 64 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHH-HcCCee
Confidence 4557 89999999999999 8999999999999888877763 245566655553 455444
No 22
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=47.51 E-value=52 Score=18.63 Aligned_cols=47 Identities=28% Similarity=0.478 Sum_probs=33.3
Q ss_pred eccchhHHHHHHhh-hcCCCceEEEEEcCCCEEEEEee--cCHHHHHHHH
Q 019302 90 KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGT--VDITEVRSYI 136 (343)
Q Consensus 90 ~MhCeGCa~KIkKA-~kikGVeSVeVDlkkqkVTVtGt--VDp~kLveaL 136 (343)
+|+|..|...+... ..+.|+....+.+....+.+... .+...+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (63)
T cd00371 6 GMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAI 55 (63)
T ss_pred CeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHH
Confidence 78899999999888 88889888777777666555532 3444443333
No 23
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=37.59 E-value=1.4e+02 Score=24.12 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=44.8
Q ss_pred chhHHHHHHhh-hcCCCceEEEEEcCCCEEEEE----eecCHHHHHHHHHHHhCCceEEe
Q 019302 93 CDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK----GTVDITEVRSYIKDELKKDVVII 147 (343)
Q Consensus 93 CeGCa~KIkKA-~kikGVeSVeVDlkkqkVTVt----GtVDp~kLveaLrKKtgK~AeIV 147 (343)
..-|...++.. ..|+ +-+++..+..+++++- +.||--.|+..|.+..+-+++|.
T Consensus 28 l~~c~~~~~~~~L~m~-lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~~RIem~ 86 (88)
T PF04468_consen 28 LKFCRELVKELGLPMK-LVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFKTRIEMR 86 (88)
T ss_pred HHHHHHHHHHcCCCeE-EEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhCceEEEE
Confidence 45688888888 7776 7788889999999985 67999999999998888777553
No 24
>PRK11023 outer membrane lipoprotein; Provisional
Probab=36.09 E-value=3.4e+02 Score=24.76 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=54.7
Q ss_pred EEEeecCCCeEEEEEecCHHHHHHHHHHHhCCceEEecCCCcchhhcccchhhHHHHHHhhhcCCCCCCCCCCcceEEEE
Q 019302 8 RVKGDSNSIKLEVTGMVDPWKIQELVEKETKKKVELIFPLTQMAAKRVDNQISEEKLKRKKKIHRNDIGSKQTEEGTYVM 87 (343)
Q Consensus 8 sV~vD~k~~KVTVtG~VDP~kVv~rLrKKTgKkaELVSp~Pkk~e~k~e~~~~~~kK~e~~k~~~kk~e~kkp~~~TVvL 87 (343)
.+.+....+.||.+|.|+-.....+..+-. +++.=|.-. .=.|
T Consensus 69 ~I~V~v~~G~V~L~G~V~~~~~k~~A~~ia-~~v~GV~~V------------------------------------~N~l 111 (191)
T PRK11023 69 RINVTAYQGKVLLTGQSPNAELSERAKQIA-MGVEGVNEV------------------------------------YNEI 111 (191)
T ss_pred eEEEEEECCEEEEEEEeCCHHHHHHHHHHH-hcCCCceee------------------------------------ccee
Confidence 688999999999999999888777776432 222211100 0011
Q ss_pred EE--------eccchhHHHHHHhh-hcCCCce--EEEEEcCCCEEEEEeecCHHHHH
Q 019302 88 KI--------KLCCDSCNQKLRKI-MKIKGLE--TVNMDVQEDLVKVKGTVDITEVR 133 (343)
Q Consensus 88 KV--------~MhCeGCa~KIkKA-~kikGVe--SVeVDlkkqkVTVtGtVDp~kLv 133 (343)
.| .++-.-=..+|+.+ ..-+.+. .|.|...++.|++.|.++....-
T Consensus 112 ~V~~~~~~~~~~~D~~It~kik~~L~~~~~v~~~~I~V~t~~G~V~L~G~v~~~e~~ 168 (191)
T PRK11023 112 RQGQPIGLGTASKDTWITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQREAK 168 (191)
T ss_pred eeccccccccccCcHHHHHHHHHHHhcCCCCCcceEEEEEECcEEEEEEEeCHHHHH
Confidence 11 01112244567777 5545544 56677789999999999876543
No 25
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=29.21 E-value=1e+02 Score=27.99 Aligned_cols=40 Identities=18% Similarity=0.407 Sum_probs=31.9
Q ss_pred eEEEEEE-eccchhHHHHHHhh-hcCCCceEEEEEcC-CCEEEE
Q 019302 83 GTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQ-EDLVKV 123 (343)
Q Consensus 83 ~TVvLKV-~MhCeGCa~KIkKA-~kikGVeSVeVDlk-kqkVTV 123 (343)
..+++.| .--|..|...|... .++ |++++.|-.. .+++.+
T Consensus 100 ~~~tm~Vdr~vC~~C~~~i~~~a~~l-Gl~~L~I~~~~sG~~~~ 142 (146)
T PF14437_consen 100 RSMTMYVDRDVCGYCGGDIPSMAEKL-GLKSLTIHEPDSGKVYY 142 (146)
T ss_pred CeEEEEECcccchHHHHHHHHHHHHc-CCCeEEEEecCCCcEEE
Confidence 4577778 77899999999999 777 8999998776 665543
No 26
>PRK06418 transcription elongation factor NusA-like protein; Validated
Probab=26.75 E-value=3e+02 Score=25.41 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=41.4
Q ss_pred ceEEEEEEeccchhHHHHHHh------------h-hcC------CCceEEEEEcCCCEEEE-EeecCH------HHHHHH
Q 019302 82 EGTYVMKIKLCCDSCNQKLRK------------I-MKI------KGLETVNMDVQEDLVKV-KGTVDI------TEVRSY 135 (343)
Q Consensus 82 ~~TVvLKV~MhCeGCa~KIkK------------A-~ki------kGVeSVeVDlkkqkVTV-tGtVDp------~kLvea 135 (343)
+-.+=+|=++-|.+|.++|.. + .++ .+++-...=...++|++ ...=|. -..+++
T Consensus 5 ~~~~c~kt~ilC~~c~~~~~~G~v~~~dv~i~~~l~~l~~~~~l~~~~~~k~~~~ddrvIfvV~~gdg~aIGk~G~~ik~ 84 (166)
T PRK06418 5 ICEVCVKTGLLCPRCQSLLDSGEVTELDVEVSKVLLKLEEDKELKDVEYKKAYEVDDLVILLVTSGPRIPIGKGGKIAKA 84 (166)
T ss_pred eeeEEeccCccChhHHhHhhcCceEEeehHHHHHHHHhhccccccCceEEEEEEeCCEEEEEEeCCCcccccccchHHHH
Confidence 344556669999999998753 3 333 45444333222456654 322222 258899
Q ss_pred HHHHhCCceEEe
Q 019302 136 IKDELKKDVVII 147 (343)
Q Consensus 136 LrKKtgK~AeIV 147 (343)
|++.+||+++|+
T Consensus 85 l~~~lgk~VevV 96 (166)
T PRK06418 85 LSRKLGKKVRVV 96 (166)
T ss_pred HHHHhCCcEEEE
Confidence 999999999777
No 27
>PHA01634 hypothetical protein
Probab=23.14 E-value=33 Score=31.34 Aligned_cols=37 Identities=8% Similarity=-0.058 Sum_probs=23.3
Q ss_pred eecCCCeEEEEE-ecCHHHHHHHHHHHhCCceEEecCCCc
Q 019302 11 GDSNSIKLEVTG-MVDPWKIQELVEKETKKKVELIFPLTQ 49 (343)
Q Consensus 11 vD~k~~KVTVtG-~VDP~kVv~rLrKKTgKkaELVSp~Pk 49 (343)
+|..+.+|...| .+--..|.=.|+ --|+|-.+-|.|+
T Consensus 25 idvk~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~k 62 (156)
T PHA01634 25 LNVYQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEK 62 (156)
T ss_pred eeecCCEEEEecCCccchhhHHhhc--CccEEEEeccCHH
Confidence 577888888888 566777766664 3344544444433
No 28
>PLN02804 chalcone isomerase
Probab=21.91 E-value=82 Score=29.95 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=27.5
Q ss_pred CccEEEeecCCCeEEEEE-ecCHHHHHHHHHHHhCCc
Q 019302 5 GVKRVKGDSNSIKLEVTG-MVDPWKIQELVEKETKKK 40 (343)
Q Consensus 5 GVesV~vD~k~~KVTVtG-~VDP~kVv~rLrKKTgKk 40 (343)
|+..+++-...=|+|..| +++| .++..|.+|-||.
T Consensus 28 G~R~~~I~~~~iK~yAiGvYle~-~~~~~L~kwkgk~ 63 (206)
T PLN02804 28 GITDIEIHFLQIKFTAIGVYLEP-SVKGHLQSWKGKP 63 (206)
T ss_pred cccceEEEeEEEEEEEEEEEecH-HHHHHHHHhcCCC
Confidence 777777777767788899 8999 6888898776654
No 29
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.77 E-value=3.9e+02 Score=23.01 Aligned_cols=70 Identities=29% Similarity=0.340 Sum_probs=43.8
Q ss_pred ceEEEEEE-eccchhHHHHHHhh-hcCCCceEEEE-----E--cCCCEEEEEee-cCHHHHHHHHHHHhCCceEEecccc
Q 019302 82 EGTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNM-----D--VQEDLVKVKGT-VDITEVRSYIKDELKKDVVIIFPAE 151 (343)
Q Consensus 82 ~~TVvLKV-~MhCeGCa~KIkKA-~kikGVeSVeV-----D--lkkqkVTVtGt-VDp~kLveaLrKKtgK~AeIVsp~E 151 (343)
...++|-| .-|-+--.-.+-+. ++++||+.|.+ | ..+=++||.|+ +|-+.|.+.|+ .+|-- |-|-+|
T Consensus 5 iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE-~~Gg~--IHSiDe 81 (97)
T COG1888 5 IRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIE-ELGGA--IHSIDE 81 (97)
T ss_pred ceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHH-HcCCe--eeehhh
Confidence 34566666 33323333344455 78888776653 3 34557888896 99999999996 57753 445456
Q ss_pred ccC
Q 019302 152 VVI 154 (343)
Q Consensus 152 vVP 154 (343)
+|.
T Consensus 82 vva 84 (97)
T COG1888 82 VVA 84 (97)
T ss_pred hhh
Confidence 653
No 30
>PF05813 Orthopox_F7: Orthopoxvirus F7 protein; InterPro: IPR008725 The function of the orthopoxvirus F7L proteins are unknown.
Probab=20.17 E-value=21 Score=29.01 Aligned_cols=19 Identities=42% Similarity=0.623 Sum_probs=16.3
Q ss_pred CCCCCCcceEeeeeccccc
Q 019302 185 KKDDGNNATIDKKYRGAIT 203 (343)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ 203 (343)
+|.+-|+.-|+.||||||.
T Consensus 60 ~k~~intldikrryrhaie 78 (82)
T PF05813_consen 60 EKSDINTLDIKRRYRHAIE 78 (82)
T ss_pred cccccceehHHHHHHHhhh
Confidence 4567899999999999985
Done!