Query 019303
Match_columns 343
No_of_seqs 211 out of 1496
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 08:21:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 6.2E-71 1.4E-75 509.1 33.8 305 5-314 1-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 2.8E-69 6E-74 488.4 31.9 315 4-323 11-335 (336)
3 PRK09912 L-glyceraldehyde 3-ph 100.0 2.6E-63 5.6E-68 466.4 32.5 306 4-314 12-334 (346)
4 TIGR01293 Kv_beta voltage-depe 100.0 2.5E-63 5.5E-68 461.7 31.7 298 7-311 1-316 (317)
5 PRK10625 tas putative aldo-ket 100.0 4.7E-63 1E-67 465.3 33.1 304 5-313 1-339 (346)
6 COG0656 ARA1 Aldo/keto reducta 100.0 1.1E-63 2.4E-68 444.0 25.4 258 4-315 2-266 (280)
7 PLN02587 L-galactose dehydroge 100.0 3.2E-60 6.9E-65 440.6 31.3 286 7-313 1-300 (314)
8 PRK10376 putative oxidoreducta 100.0 1.2E-58 2.6E-63 425.1 31.7 281 1-314 1-289 (290)
9 cd06660 Aldo_ket_red Aldo-keto 100.0 1.2E-58 2.7E-63 424.8 31.2 280 7-310 1-284 (285)
10 KOG1577 Aldo/keto reductase fa 100.0 5.3E-58 1.1E-62 407.5 24.8 258 7-315 6-287 (300)
11 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.2E-57 2.6E-62 417.8 25.4 276 19-312 1-282 (283)
12 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.1E-56 2.4E-61 407.3 27.6 245 16-314 2-253 (267)
13 PRK14863 bifunctional regulato 100.0 5.2E-56 1.1E-60 406.9 24.4 268 14-310 2-279 (292)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 7.8E-55 1.7E-59 396.5 28.0 254 6-314 5-263 (275)
15 COG4989 Predicted oxidoreducta 100.0 1.8E-54 4E-59 368.9 22.9 284 5-314 1-294 (298)
16 KOG1576 Predicted oxidoreducta 100.0 4.8E-51 1E-55 350.4 22.9 309 4-334 21-337 (342)
17 COG1453 Predicted oxidoreducta 100.0 3.5E-50 7.6E-55 360.9 24.2 272 5-313 1-285 (391)
18 KOG3023 Glutamate-cysteine lig 97.8 3.3E-05 7.1E-10 66.8 5.9 71 136-207 155-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 94.1 2.5 5.3E-05 39.2 15.0 156 36-212 134-291 (316)
20 cd03316 MR_like Mandelate race 86.1 27 0.00059 32.8 14.2 152 36-207 139-298 (357)
21 COG1748 LYS9 Saccharopine dehy 82.0 6.3 0.00014 37.7 7.8 80 39-133 80-159 (389)
22 PRK10550 tRNA-dihydrouridine s 82.0 29 0.00062 32.3 12.0 133 36-180 73-224 (312)
23 cd03315 MLE_like Muconate lact 81.5 40 0.00086 30.2 15.2 157 36-212 85-243 (265)
24 PRK07945 hypothetical protein; 80.9 22 0.00047 33.4 11.0 103 39-156 112-226 (335)
25 PRK08392 hypothetical protein; 80.7 37 0.0008 29.5 11.8 146 40-205 16-179 (215)
26 cd03174 DRE_TIM_metallolyase D 79.2 13 0.00028 33.2 8.7 106 100-207 15-135 (265)
27 PRK08609 hypothetical protein; 77.7 19 0.00041 36.5 10.1 149 40-204 351-522 (570)
28 PRK13958 N-(5'-phosphoribosyl) 75.9 7.4 0.00016 33.8 5.8 67 113-181 16-83 (207)
29 COG0159 TrpA Tryptophan syntha 75.8 62 0.0013 29.3 12.3 29 174-202 96-124 (265)
30 cd00739 DHPS DHPS subgroup of 75.8 36 0.00077 30.7 10.4 101 101-207 21-127 (257)
31 PF03102 NeuB: NeuB family; I 75.6 17 0.00037 32.4 8.1 108 35-162 53-182 (241)
32 cd00423 Pterin_binding Pterin 75.4 43 0.00094 30.0 10.9 103 101-209 21-129 (258)
33 cd04740 DHOD_1B_like Dihydroor 75.2 66 0.0014 29.3 13.0 151 36-201 100-286 (296)
34 PF07021 MetW: Methionine bios 74.0 11 0.00025 32.2 6.3 150 42-213 5-172 (193)
35 COG0635 HemN Coproporphyrinoge 73.7 24 0.00051 34.2 9.2 60 101-162 201-276 (416)
36 PF05913 DUF871: Bacterial pro 73.4 9.3 0.0002 36.2 6.2 211 36-295 12-235 (357)
37 cd02930 DCR_FMN 2,4-dienoyl-Co 72.1 89 0.0019 29.4 12.9 16 44-59 143-158 (353)
38 PRK07535 methyltetrahydrofolat 70.1 78 0.0017 28.5 11.2 133 102-265 23-157 (261)
39 KOG0259 Tyrosine aminotransfer 69.9 91 0.002 29.8 11.5 66 16-89 62-136 (447)
40 PRK13796 GTPase YqeH; Provisio 69.1 1E+02 0.0023 29.2 12.4 120 35-165 54-176 (365)
41 cd03321 mandelate_racemase Man 68.1 1E+02 0.0023 29.0 12.2 150 37-205 142-293 (355)
42 PRK01222 N-(5'-phosphoribosyl) 67.6 13 0.00028 32.3 5.5 66 114-181 19-85 (210)
43 COG2102 Predicted ATPases of P 67.4 14 0.00029 32.4 5.4 125 110-262 51-176 (223)
44 cd03323 D-glucarate_dehydratas 65.6 1.3E+02 0.0028 28.9 14.6 150 36-209 168-321 (395)
45 PRK00164 moaA molybdenum cofac 65.4 1.2E+02 0.0025 28.2 13.2 153 35-205 49-228 (331)
46 cd00308 enolase_like Enolase-s 64.5 46 0.001 29.1 8.5 87 122-212 120-208 (229)
47 COG2089 SpsE Sialic acid synth 64.5 1.2E+02 0.0027 28.2 11.3 114 36-167 88-221 (347)
48 TIGR02370 pyl_corrinoid methyl 64.5 74 0.0016 27.3 9.5 145 36-201 10-164 (197)
49 COG0218 Predicted GTPase [Gene 63.3 99 0.0021 26.7 10.4 100 38-149 91-198 (200)
50 PRK07379 coproporphyrinogen II 63.2 47 0.001 32.0 8.9 59 101-161 179-254 (400)
51 COG2069 CdhD CO dehydrogenase/ 63.0 88 0.0019 28.7 9.7 95 112-211 158-262 (403)
52 PRK06294 coproporphyrinogen II 62.6 54 0.0012 31.2 9.1 61 100-162 166-243 (370)
53 COG1140 NarY Nitrate reductase 62.5 2.9 6.4E-05 39.2 0.5 54 149-202 263-317 (513)
54 PRK07259 dihydroorotate dehydr 61.4 1.3E+02 0.0028 27.5 11.3 153 36-201 102-289 (301)
55 PF05690 ThiG: Thiazole biosyn 61.3 61 0.0013 28.7 8.2 112 18-152 9-125 (247)
56 cd03322 rpsA The starvation se 60.7 1.5E+02 0.0033 28.0 14.5 147 36-209 126-274 (361)
57 PRK05660 HemN family oxidoredu 60.7 61 0.0013 30.9 9.1 61 100-162 170-243 (378)
58 cd03318 MLE Muconate Lactonizi 59.6 1.6E+02 0.0034 27.8 13.9 153 38-210 144-300 (365)
59 TIGR00381 cdhD CO dehydrogenas 59.5 1.3E+02 0.0028 28.8 10.7 106 103-213 127-253 (389)
60 COG0135 TrpF Phosphoribosylant 59.4 43 0.00093 29.1 7.1 82 114-204 18-102 (208)
61 PF00682 HMGL-like: HMGL-like 59.4 91 0.002 27.3 9.5 162 35-211 11-194 (237)
62 TIGR00735 hisF imidazoleglycer 59.4 78 0.0017 28.2 9.1 91 110-203 160-253 (254)
63 PRK04452 acetyl-CoA decarbonyl 59.3 1.5E+02 0.0033 27.6 11.2 95 112-209 83-184 (319)
64 cd03317 NAAAR N-acylamino acid 58.1 1.6E+02 0.0036 27.5 14.5 149 38-210 139-289 (354)
65 TIGR01928 menC_lowGC/arch o-su 57.0 1.7E+02 0.0036 27.2 14.9 153 36-212 132-286 (324)
66 TIGR01502 B_methylAsp_ase meth 56.8 66 0.0014 31.1 8.6 86 123-209 265-357 (408)
67 PRK08446 coproporphyrinogen II 55.4 1.4E+02 0.0031 28.0 10.6 61 100-162 161-231 (350)
68 PRK05414 urocanate hydratase; 55.2 34 0.00074 33.7 6.2 138 13-171 94-254 (556)
69 TIGR01228 hutU urocanate hydra 54.7 34 0.00074 33.6 6.1 148 13-181 85-258 (545)
70 PRK00730 rnpA ribonuclease P; 54.5 77 0.0017 25.6 7.3 63 78-149 46-110 (138)
71 PRK09058 coproporphyrinogen II 53.9 61 0.0013 31.7 8.0 29 100-129 226-254 (449)
72 PRK10558 alpha-dehydro-beta-de 53.6 1.3E+02 0.0028 27.0 9.5 66 143-210 10-79 (256)
73 PRK05692 hydroxymethylglutaryl 53.6 1.7E+02 0.0038 26.7 10.5 104 100-206 22-139 (287)
74 PRK06424 transcription factor; 52.5 52 0.0011 26.8 6.1 82 190-272 23-110 (144)
75 cd00740 MeTr MeTr subgroup of 51.1 1.8E+02 0.004 26.0 12.1 105 101-209 23-128 (252)
76 PRK13347 coproporphyrinogen II 51.1 69 0.0015 31.4 7.9 61 100-162 215-291 (453)
77 TIGR00126 deoC deoxyribose-pho 50.5 1E+02 0.0022 26.8 8.0 72 36-121 130-205 (211)
78 COG2355 Zn-dependent dipeptida 50.0 1.1E+02 0.0025 28.3 8.6 106 39-159 150-260 (313)
79 PRK13803 bifunctional phosphor 49.3 71 0.0015 32.7 7.9 68 115-182 20-88 (610)
80 PF11242 DUF2774: Protein of u 49.1 25 0.00054 24.0 3.1 22 250-271 15-36 (63)
81 cd00945 Aldolase_Class_I Class 48.5 1.6E+02 0.0034 24.5 9.2 98 36-149 11-109 (201)
82 TIGR00190 thiC thiamine biosyn 48.5 2.6E+02 0.0056 27.0 11.0 147 36-213 75-225 (423)
83 cd00408 DHDPS-like Dihydrodipi 48.1 2.1E+02 0.0045 25.7 15.6 121 35-170 15-149 (281)
84 PRK15072 bifunctional D-altron 48.1 1.4E+02 0.003 28.7 9.4 84 122-209 232-317 (404)
85 PRK09613 thiH thiamine biosynt 48.0 2.4E+02 0.0052 27.9 11.0 169 35-205 28-237 (469)
86 cd02070 corrinoid_protein_B12- 48.0 1.8E+02 0.0038 24.9 10.9 145 36-201 9-162 (201)
87 cd00405 PRAI Phosphoribosylant 47.7 1.2E+02 0.0027 25.8 8.2 47 112-165 67-113 (203)
88 PRK05628 coproporphyrinogen II 47.4 1.3E+02 0.0029 28.4 9.1 28 100-128 171-198 (375)
89 PF00682 HMGL-like: HMGL-like 47.2 1.9E+02 0.0042 25.2 9.6 97 101-203 11-124 (237)
90 cd07944 DRE_TIM_HOA_like 4-hyd 47.2 1.7E+02 0.0037 26.4 9.3 109 97-206 13-128 (266)
91 cd07943 DRE_TIM_HOA 4-hydroxy- 47.1 1.6E+02 0.0035 26.4 9.1 105 100-206 18-131 (263)
92 cd04731 HisF The cyclase subun 47.1 2E+02 0.0043 25.3 12.0 144 36-198 82-242 (243)
93 PRK02901 O-succinylbenzoate sy 47.0 1.7E+02 0.0036 27.4 9.4 71 140-212 173-244 (327)
94 COG1801 Uncharacterized conser 46.8 2.2E+02 0.0048 25.7 11.3 109 19-133 4-115 (263)
95 cd03314 MAL Methylaspartate am 46.4 1.9E+02 0.0042 27.5 9.9 85 125-209 230-321 (369)
96 KOG0059 Lipid exporter ABCA1 a 46.4 97 0.0021 33.3 8.7 72 100-173 669-769 (885)
97 PRK00208 thiG thiazole synthas 46.2 2.2E+02 0.0048 25.5 13.8 105 100-206 72-181 (250)
98 PLN02389 biotin synthase 46.0 2.8E+02 0.006 26.6 11.5 101 35-151 116-227 (379)
99 smart00642 Aamy Alpha-amylase 45.5 25 0.00054 29.3 3.4 22 189-210 72-93 (166)
100 cd01973 Nitrogenase_VFe_beta_l 45.0 3.1E+02 0.0068 26.9 12.5 113 58-179 65-194 (454)
101 PF14871 GHL6: Hypothetical gl 44.9 35 0.00076 27.3 4.0 25 186-210 43-67 (132)
102 PRK10415 tRNA-dihydrouridine s 44.8 2.6E+02 0.0057 25.9 12.2 134 36-180 75-224 (321)
103 PF13378 MR_MLE_C: Enolase C-t 44.7 26 0.00057 26.6 3.2 54 158-212 3-57 (111)
104 PRK09061 D-glutamate deacylase 44.7 2E+02 0.0044 28.6 10.2 111 40-157 171-282 (509)
105 COG1121 ZnuC ABC-type Mn/Zn tr 44.4 1.1E+02 0.0024 27.5 7.4 64 102-168 113-205 (254)
106 CHL00076 chlB photochlorophyll 44.4 3.2E+02 0.007 27.3 11.5 89 122-210 117-248 (513)
107 TIGR03247 glucar-dehydr glucar 44.2 3.2E+02 0.0069 26.7 14.0 86 124-209 252-338 (441)
108 COG2185 Sbm Methylmalonyl-CoA 43.9 68 0.0015 26.1 5.4 59 153-215 18-78 (143)
109 PRK08599 coproporphyrinogen II 43.7 1.4E+02 0.0031 28.2 8.7 60 100-161 163-239 (377)
110 PLN02363 phosphoribosylanthran 43.7 67 0.0015 28.9 6.0 74 102-181 56-130 (256)
111 PRK08208 coproporphyrinogen II 43.5 1.4E+02 0.003 29.1 8.6 61 100-162 204-275 (430)
112 TIGR03822 AblA_like_2 lysine-2 43.2 2.8E+02 0.006 25.8 12.2 104 36-151 120-228 (321)
113 TIGR00538 hemN oxygen-independ 43.1 1.2E+02 0.0025 29.8 8.1 61 100-162 214-290 (455)
114 PRK05283 deoxyribose-phosphate 42.7 1.7E+02 0.0038 26.3 8.4 78 36-123 144-227 (257)
115 PF01175 Urocanase: Urocanase; 42.6 51 0.0011 32.5 5.3 124 44-181 108-257 (546)
116 PRK14017 galactonate dehydrata 42.2 1.8E+02 0.0039 27.7 9.1 84 122-209 203-288 (382)
117 cd06543 GH18_PF-ChiA-like PF-C 42.1 2.8E+02 0.006 25.5 13.9 186 14-212 67-265 (294)
118 TIGR01496 DHPS dihydropteroate 41.9 2.6E+02 0.0056 25.1 13.0 99 101-207 20-125 (257)
119 TIGR02026 BchE magnesium-proto 41.5 2.1E+02 0.0045 28.4 9.7 90 110-201 289-392 (497)
120 KOG1549 Cysteine desulfurase N 41.5 1.9E+02 0.0041 28.1 8.8 64 139-204 144-215 (428)
121 cd02810 DHOD_DHPD_FMN Dihydroo 41.4 2.7E+02 0.0058 25.1 11.9 130 36-179 109-271 (289)
122 cd03329 MR_like_4 Mandelate ra 41.4 3.1E+02 0.0068 25.9 14.5 151 36-207 143-299 (368)
123 PRK10128 2-keto-3-deoxy-L-rham 40.8 2.8E+02 0.006 25.1 9.8 66 143-209 9-77 (267)
124 PRK09427 bifunctional indole-3 40.8 62 0.0013 31.8 5.7 65 114-182 273-338 (454)
125 PRK13352 thiamine biosynthesis 40.8 3.5E+02 0.0075 26.2 11.1 148 36-214 75-229 (431)
126 TIGR03239 GarL 2-dehydro-3-deo 40.4 2.5E+02 0.0054 25.1 9.2 65 144-210 4-72 (249)
127 PRK02083 imidazole glycerol ph 40.4 2.6E+02 0.0057 24.7 10.2 87 114-203 162-251 (253)
128 PRK05799 coproporphyrinogen II 40.1 2E+02 0.0043 27.2 9.0 28 100-128 162-189 (374)
129 PLN02591 tryptophan synthase 40.0 2.8E+02 0.006 24.9 10.8 76 121-202 29-108 (250)
130 cd07943 DRE_TIM_HOA 4-hydroxy- 39.9 2.8E+02 0.006 24.8 15.2 157 35-211 19-198 (263)
131 COG1751 Uncharacterized conser 39.8 1.1E+02 0.0025 25.1 6.0 75 35-120 11-85 (186)
132 PRK06582 coproporphyrinogen II 39.7 1.7E+02 0.0037 28.0 8.5 61 100-162 173-250 (390)
133 cd04728 ThiG Thiazole synthase 39.5 2.8E+02 0.0061 24.8 13.1 104 100-205 72-180 (248)
134 COG4555 NatA ABC-type Na+ tran 39.5 1.4E+02 0.0029 26.3 6.8 70 100-171 104-202 (245)
135 PRK00507 deoxyribose-phosphate 39.4 1.5E+02 0.0033 25.9 7.5 75 36-121 134-209 (221)
136 PRK14461 ribosomal RNA large s 39.3 3E+02 0.0064 26.3 9.7 88 124-211 231-352 (371)
137 cd01974 Nitrogenase_MoFe_beta 39.0 1.5E+02 0.0033 28.8 8.1 109 57-177 63-191 (435)
138 PRK05588 histidinol-phosphatas 38.9 1.2E+02 0.0026 27.0 7.0 78 39-131 17-103 (255)
139 COG4130 Predicted sugar epimer 38.7 1.6E+02 0.0035 25.8 7.1 80 161-260 50-136 (272)
140 PHA02128 hypothetical protein 38.2 96 0.0021 23.7 5.1 70 137-206 60-150 (151)
141 COG3623 SgaU Putative L-xylulo 37.9 48 0.001 29.3 3.9 76 12-88 65-155 (287)
142 PRK05406 LamB/YcsF family prot 37.8 1.3E+02 0.0027 27.0 6.6 80 21-117 13-95 (246)
143 PRK09413 IS2 repressor TnpA; R 37.5 37 0.0008 26.6 3.0 41 35-77 13-53 (121)
144 PRK13753 dihydropteroate synth 37.1 3.3E+02 0.0071 24.9 11.5 102 101-210 22-129 (279)
145 PRK09856 fructoselysine 3-epim 36.5 2E+02 0.0044 25.5 8.2 52 161-212 14-72 (275)
146 PRK08195 4-hyroxy-2-oxovalerat 36.3 3.3E+02 0.0071 25.5 9.7 103 99-206 20-134 (337)
147 cd03327 MR_like_2 Mandelate ra 36.2 3.6E+02 0.0079 25.1 14.9 152 36-207 120-280 (341)
148 TIGR01927 menC_gamma/gm+ o-suc 36.2 2.6E+02 0.0056 25.7 8.9 73 141-213 196-270 (307)
149 PLN02746 hydroxymethylglutaryl 36.2 2.2E+02 0.0048 26.9 8.4 101 100-206 64-181 (347)
150 PRK12569 hypothetical protein; 36.1 1.5E+02 0.0032 26.5 6.8 80 21-117 14-98 (245)
151 PF00290 Trp_syntA: Tryptophan 36.0 1.7E+02 0.0038 26.3 7.4 90 102-202 22-117 (259)
152 PF01402 RHH_1: Ribbon-helix-h 35.8 63 0.0014 19.3 3.3 21 247-267 10-30 (39)
153 TIGR00035 asp_race aspartate r 35.7 1.5E+02 0.0033 25.9 7.0 63 101-164 14-88 (229)
154 CHL00162 thiG thiamin biosynth 35.7 3.3E+02 0.0072 24.5 9.7 52 100-151 80-138 (267)
155 PRK12928 lipoyl synthase; Prov 35.4 3.2E+02 0.007 25.0 9.3 161 35-209 87-280 (290)
156 cd02803 OYE_like_FMN_family Ol 35.4 3.6E+02 0.0077 24.8 13.7 93 80-179 207-310 (327)
157 COG1679 Predicted aconitase [G 35.3 4.1E+02 0.0088 25.4 10.4 102 42-150 208-316 (403)
158 PF07994 NAD_binding_5: Myo-in 35.1 92 0.002 28.7 5.6 146 102-289 130-283 (295)
159 COG4464 CapC Capsular polysacc 34.3 1E+02 0.0022 27.0 5.3 28 36-63 18-45 (254)
160 PRK02910 light-independent pro 34.3 4.4E+02 0.0095 26.4 10.7 100 66-179 69-194 (519)
161 PF10668 Phage_terminase: Phag 34.1 72 0.0016 21.8 3.5 17 250-266 24-40 (60)
162 cd08583 PI-PLCc_GDPD_SF_unchar 34.0 3.2E+02 0.0069 23.8 8.9 22 37-58 14-35 (237)
163 PRK10605 N-ethylmaleimide redu 33.9 4.2E+02 0.009 25.1 14.4 92 83-177 227-318 (362)
164 TIGR02631 xylA_Arthro xylose i 33.9 3.9E+02 0.0086 25.5 9.9 59 18-76 7-79 (382)
165 COG2987 HutU Urocanate hydrata 33.9 93 0.002 30.3 5.4 100 64-177 148-261 (561)
166 TIGR02026 BchE magnesium-proto 33.7 3.2E+02 0.007 27.1 9.6 105 101-209 222-345 (497)
167 TIGR03217 4OH_2_O_val_ald 4-hy 33.5 4.1E+02 0.0088 24.9 9.9 104 99-205 19-132 (333)
168 TIGR00676 fadh2 5,10-methylene 33.5 3.6E+02 0.0078 24.3 15.8 149 38-203 15-186 (272)
169 cd01301 rDP_like renal dipepti 33.2 2.7E+02 0.0059 25.7 8.5 107 38-159 154-263 (309)
170 COG1151 6Fe-6S prismane cluste 33.1 1.6E+02 0.0035 29.5 7.1 95 104-203 360-463 (576)
171 COG4152 ABC-type uncharacteriz 33.1 2.8E+02 0.006 25.2 7.9 70 100-171 101-199 (300)
172 TIGR03597 GTPase_YqeH ribosome 32.3 4E+02 0.0087 25.1 9.7 120 35-165 48-170 (360)
173 PRK06015 keto-hydroxyglutarate 32.0 1.1E+02 0.0024 26.4 5.3 87 102-205 14-102 (201)
174 COG3215 PilZ Tfp pilus assembl 32.0 1.8E+02 0.0038 22.2 5.6 79 36-116 18-106 (117)
175 PF01118 Semialdhyde_dh: Semia 31.8 67 0.0014 24.9 3.7 27 36-62 75-101 (121)
176 PRK09249 coproporphyrinogen II 31.7 2.2E+02 0.0049 27.8 8.1 61 100-162 214-290 (453)
177 cd03325 D-galactonate_dehydrat 31.7 4.4E+02 0.0095 24.7 15.8 153 36-207 123-285 (352)
178 cd07948 DRE_TIM_HCS Saccharomy 31.5 3.9E+02 0.0084 24.0 10.7 24 36-59 20-43 (262)
179 cd01965 Nitrogenase_MoFe_beta_ 31.3 3.5E+02 0.0076 26.1 9.3 108 59-178 61-187 (428)
180 cd01297 D-aminoacylase D-amino 31.3 4.8E+02 0.01 25.0 11.5 102 39-151 168-275 (415)
181 TIGR03822 AblA_like_2 lysine-2 31.2 4.3E+02 0.0094 24.5 12.3 109 102-213 120-240 (321)
182 PRK14459 ribosomal RNA large s 31.1 3.7E+02 0.0081 25.7 9.1 89 123-211 240-359 (373)
183 COG2256 MGS1 ATPase related to 30.7 2.7E+02 0.0059 26.9 8.0 102 42-161 37-142 (436)
184 cd07939 DRE_TIM_NifV Streptomy 30.7 3.9E+02 0.0084 23.8 13.3 154 98-301 14-182 (259)
185 PF04476 DUF556: Protein of un 30.6 3.9E+02 0.0084 23.7 9.0 150 36-203 9-183 (235)
186 PRK08255 salicylyl-CoA 5-hydro 30.3 6.7E+02 0.015 26.4 13.6 94 79-179 616-716 (765)
187 PF11020 DUF2610: Domain of un 30.3 1.3E+02 0.0028 21.7 4.4 28 242-269 48-75 (82)
188 TIGR00126 deoC deoxyribose-pho 30.2 3.7E+02 0.008 23.4 9.8 100 35-149 15-114 (211)
189 TIGR01182 eda Entner-Doudoroff 29.7 1.2E+02 0.0027 26.2 5.2 87 102-205 18-106 (204)
190 cd07937 DRE_TIM_PC_TC_5S Pyruv 29.6 4.2E+02 0.0092 23.9 15.9 123 35-168 18-154 (275)
191 cd07948 DRE_TIM_HCS Saccharomy 29.3 3.5E+02 0.0076 24.3 8.3 100 100-207 18-132 (262)
192 PF01904 DUF72: Protein of unk 29.1 3.9E+02 0.0085 23.3 11.0 135 44-205 12-147 (230)
193 PRK09856 fructoselysine 3-epim 28.7 4.1E+02 0.009 23.5 11.0 52 190-261 93-144 (275)
194 PLN00191 enolase 28.5 4.3E+02 0.0093 26.1 9.3 97 101-206 295-394 (457)
195 TIGR01278 DPOR_BchB light-inde 28.4 4.7E+02 0.01 26.1 9.8 103 60-178 66-193 (511)
196 TIGR00048 radical SAM enzyme, 28.3 3.3E+02 0.0071 25.8 8.3 88 124-211 218-333 (355)
197 PF01527 HTH_Tnp_1: Transposas 28.3 62 0.0013 22.5 2.7 27 246-273 21-47 (76)
198 PRK00912 ribonuclease P protei 28.2 4.1E+02 0.0088 23.2 13.0 24 38-61 16-39 (237)
199 TIGR02530 flg_new flagellar op 28.2 66 0.0014 24.2 2.8 36 286-321 18-53 (96)
200 cd08590 PI-PLCc_Rv2075c_like C 28.1 2.1E+02 0.0045 25.9 6.6 18 43-60 46-63 (267)
201 TIGR02534 mucon_cyclo muconate 28.1 5.1E+02 0.011 24.4 14.6 86 123-212 214-301 (368)
202 PF13407 Peripla_BP_4: Peripla 28.0 2E+02 0.0043 24.9 6.6 51 103-159 13-63 (257)
203 smart00052 EAL Putative diguan 27.7 2.6E+02 0.0057 23.8 7.2 99 105-206 100-209 (241)
204 PRK12581 oxaloacetate decarbox 27.6 6.1E+02 0.013 25.1 14.4 112 36-161 103-215 (468)
205 TIGR02660 nifV_homocitr homoci 27.5 5.3E+02 0.012 24.4 12.6 141 107-296 25-180 (365)
206 PRK14462 ribosomal RNA large s 27.4 5.4E+02 0.012 24.4 9.7 86 126-211 225-338 (356)
207 COG0502 BioB Biotin synthase a 27.3 4.3E+02 0.0093 24.8 8.6 133 36-187 85-234 (335)
208 TIGR03070 couple_hipB transcri 27.0 71 0.0015 20.5 2.7 21 250-270 6-26 (58)
209 COG3172 NadR Predicted ATPase/ 27.0 3E+02 0.0065 23.2 6.6 98 49-150 78-185 (187)
210 PF00809 Pterin_bind: Pterin b 27.0 3E+02 0.0065 23.7 7.3 90 114-209 28-125 (210)
211 PRK07094 biotin synthase; Prov 27.0 3.6E+02 0.0077 24.8 8.3 21 36-56 71-91 (323)
212 cd01075 NAD_bind_Leu_Phe_Val_D 26.9 2.1E+02 0.0045 24.5 6.2 73 191-272 123-196 (200)
213 cd02932 OYE_YqiM_FMN Old yello 26.2 5.3E+02 0.012 23.9 12.7 94 79-179 219-319 (336)
214 PRK02714 O-succinylbenzoate sy 26.0 5.3E+02 0.011 23.8 14.7 85 122-212 192-277 (320)
215 PF02679 ComA: (2R)-phospho-3- 25.9 52 0.0011 29.3 2.3 98 107-205 24-131 (244)
216 PF14502 HTH_41: Helix-turn-he 25.8 73 0.0016 20.7 2.3 30 248-277 6-37 (48)
217 PRK14457 ribosomal RNA large s 25.8 5.7E+02 0.012 24.1 10.5 106 106-211 196-330 (345)
218 PRK14465 ribosomal RNA large s 25.7 4.6E+02 0.0099 24.7 8.6 88 124-211 215-329 (342)
219 PRK13111 trpA tryptophan synth 25.7 4.9E+02 0.011 23.4 10.4 76 121-202 39-119 (258)
220 TIGR00539 hemN_rel putative ox 25.6 5.1E+02 0.011 24.3 9.1 28 100-128 163-190 (360)
221 PRK14463 ribosomal RNA large s 25.3 5.6E+02 0.012 24.2 9.2 87 125-211 211-325 (349)
222 PRK15108 biotin synthase; Prov 25.3 5.7E+02 0.012 24.0 11.8 102 35-151 76-185 (345)
223 TIGR03849 arch_ComA phosphosul 25.2 1.6E+02 0.0035 26.1 5.2 97 107-205 11-118 (237)
224 cd00959 DeoC 2-deoxyribose-5-p 25.2 4.3E+02 0.0093 22.5 8.0 70 36-119 129-202 (203)
225 PF01081 Aldolase: KDPG and KH 25.1 1.2E+02 0.0025 26.2 4.2 87 102-205 18-106 (196)
226 cd00019 AP2Ec AP endonuclease 25.1 3.6E+02 0.0077 24.1 7.8 15 191-205 89-103 (279)
227 PRK06256 biotin synthase; Vali 25.0 5.5E+02 0.012 23.7 10.2 140 35-192 91-246 (336)
228 PRK14460 ribosomal RNA large s 24.9 5.9E+02 0.013 24.0 9.8 98 113-211 207-332 (354)
229 cd03324 rTSbeta_L-fuconate_deh 24.9 6.4E+02 0.014 24.4 14.7 152 36-207 196-352 (415)
230 PF15221 LEP503: Lens epitheli 24.6 84 0.0018 20.8 2.4 26 2-27 9-37 (61)
231 PF00356 LacI: Bacterial regul 24.5 88 0.0019 19.9 2.6 41 251-297 2-42 (46)
232 PRK06740 histidinol-phosphatas 24.4 5.9E+02 0.013 23.8 11.1 48 108-156 156-220 (331)
233 cd03320 OSBS o-Succinylbenzoat 24.1 3.1E+02 0.0068 24.4 7.1 84 123-211 154-238 (263)
234 cd02933 OYE_like_FMN Old yello 23.7 6.1E+02 0.013 23.7 13.6 17 45-61 159-175 (338)
235 PF10171 DUF2366: Uncharacteri 23.7 1.5E+02 0.0033 24.9 4.5 47 108-157 67-113 (173)
236 cd08556 GDPD Glycerophosphodie 23.5 3.7E+02 0.0081 21.9 7.1 23 37-59 12-34 (189)
237 PRK09454 ugpQ cytoplasmic glyc 23.4 5.1E+02 0.011 22.8 13.1 23 36-58 20-42 (249)
238 PTZ00413 lipoate synthase; Pro 22.9 6.9E+02 0.015 24.1 11.0 159 35-211 177-373 (398)
239 TIGR02090 LEU1_arch isopropylm 22.8 6.5E+02 0.014 23.8 9.7 26 35-60 19-44 (363)
240 PF00697 PRAI: N-(5'phosphorib 22.8 80 0.0017 27.0 2.8 67 113-183 14-81 (197)
241 COG0673 MviM Predicted dehydro 22.8 1.9E+02 0.0041 26.6 5.6 66 250-315 42-117 (342)
242 PF07287 DUF1446: Protein of u 22.7 1E+02 0.0022 29.3 3.7 19 189-207 60-78 (362)
243 TIGR03471 HpnJ hopanoid biosyn 22.6 5.4E+02 0.012 25.2 9.0 155 36-201 228-392 (472)
244 PF07027 DUF1318: Protein of u 22.6 1.8E+02 0.0039 21.8 4.3 30 242-271 44-73 (95)
245 cd02801 DUS_like_FMN Dihydrour 22.4 5E+02 0.011 22.3 9.5 132 36-179 65-212 (231)
246 PF08418 Pol_alpha_B_N: DNA po 22.4 84 0.0018 28.0 3.0 26 245-270 9-34 (253)
247 cd03313 enolase Enolase: Enola 22.3 7.1E+02 0.015 24.0 10.2 96 101-205 261-361 (408)
248 PF13518 HTH_28: Helix-turn-he 22.3 1.1E+02 0.0024 19.3 2.8 22 250-272 14-35 (52)
249 PRK15440 L-rhamnonate dehydrat 22.3 2.4E+02 0.0053 27.1 6.3 68 139-206 247-318 (394)
250 cd03174 DRE_TIM_metallolyase D 22.3 5.4E+02 0.012 22.6 13.5 25 36-60 17-41 (265)
251 PRK15108 biotin synthase; Prov 22.2 6.6E+02 0.014 23.6 10.0 108 101-212 76-196 (345)
252 TIGR03217 4OH_2_O_val_ald 4-hy 22.2 6.5E+02 0.014 23.5 16.3 24 35-58 21-44 (333)
253 PRK08776 cystathionine gamma-s 21.9 3.3E+02 0.0072 26.2 7.2 66 140-205 113-180 (405)
254 PRK08561 rps15p 30S ribosomal 21.7 3.5E+02 0.0075 22.2 6.0 63 247-312 33-96 (151)
255 PRK00077 eno enolase; Provisio 21.6 7.5E+02 0.016 24.0 10.1 96 101-205 261-361 (425)
256 cd04742 NPD_FabD 2-Nitropropan 21.5 3E+02 0.0065 26.7 6.7 87 114-207 7-102 (418)
257 PRK08195 4-hyroxy-2-oxovalerat 21.5 6.8E+02 0.015 23.4 16.1 24 35-58 22-45 (337)
258 PRK06552 keto-hydroxyglutarate 21.5 2.3E+02 0.005 24.7 5.4 60 138-205 50-114 (213)
259 COG4626 Phage terminase-like p 21.5 3.1E+02 0.0068 27.6 6.8 73 134-209 410-485 (546)
260 cd00248 Mth938-like Mth938-lik 21.3 2.2E+02 0.0048 21.8 4.8 52 158-209 37-88 (109)
261 cd01948 EAL EAL domain. This d 21.3 5.1E+02 0.011 22.0 7.8 101 104-207 98-209 (240)
262 TIGR03569 NeuB_NnaB N-acetylne 21.2 6.9E+02 0.015 23.4 11.3 111 35-163 73-205 (329)
263 TIGR02311 HpaI 2,4-dihydroxyhe 21.2 5.9E+02 0.013 22.6 10.4 66 143-208 3-70 (249)
264 PF00148 Oxidored_nitro: Nitro 21.2 6.7E+02 0.015 23.7 9.2 133 66-210 58-227 (398)
265 PRK14456 ribosomal RNA large s 21.0 4.5E+02 0.0098 25.0 7.7 88 124-211 237-353 (368)
266 TIGR01290 nifB nitrogenase cof 21.0 7.9E+02 0.017 24.0 10.8 111 99-212 58-199 (442)
267 PTZ00081 enolase; Provisional 21.0 7.8E+02 0.017 24.1 9.5 96 101-205 281-381 (439)
268 TIGR02082 metH 5-methyltetrahy 20.8 1.2E+03 0.026 26.1 12.9 94 115-212 378-476 (1178)
269 cd00668 Ile_Leu_Val_MetRS_core 20.7 1.4E+02 0.0031 27.4 4.3 49 103-154 81-131 (312)
270 TIGR00737 nifR3_yhdG putative 20.7 6.7E+02 0.014 23.1 12.2 137 36-183 73-225 (319)
271 TIGR02351 thiH thiazole biosyn 20.6 6.2E+02 0.014 23.9 8.7 101 35-151 103-215 (366)
272 COG1104 NifS Cysteine sulfinat 20.5 2.2E+02 0.0047 27.4 5.3 15 281-295 328-342 (386)
273 PF02525 Flavodoxin_2: Flavodo 20.4 5.2E+02 0.011 21.7 7.8 100 37-147 94-196 (199)
274 COG3653 N-acyl-D-aspartate/D-g 20.3 8.3E+02 0.018 24.0 15.8 130 40-201 184-330 (579)
275 COG0145 HyuA N-methylhydantoin 20.2 1E+03 0.022 24.9 10.5 101 35-137 136-248 (674)
276 PF00388 PI-PLC-X: Phosphatidy 20.1 71 0.0015 25.7 1.9 21 42-62 30-50 (146)
277 PF01476 LysM: LysM domain; I 20.1 1.1E+02 0.0023 18.6 2.3 19 249-267 7-25 (44)
278 TIGR01428 HAD_type_II 2-haloal 20.1 1.6E+02 0.0035 24.6 4.2 63 107-171 62-128 (198)
279 PRK14470 ribosomal RNA large s 20.1 5.4E+02 0.012 24.1 7.9 87 125-211 208-322 (336)
280 PRK07531 bifunctional 3-hydrox 20.0 8.3E+02 0.018 24.2 9.7 124 121-270 80-218 (495)
281 PF05368 NmrA: NmrA-like famil 20.0 3.4E+02 0.0075 23.2 6.4 84 121-212 22-106 (233)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=6.2e-71 Score=509.10 Aligned_cols=305 Identities=43% Similarity=0.671 Sum_probs=275.1
Q ss_pred CceeeCCCCCceeCcceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCC-CCCEE
Q 019303 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGM-RERVE 83 (343)
Q Consensus 5 m~~~~Lg~tg~~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~-R~~~~ 83 (343)
|++++||++|++||+||||||.+|+.+.. .+.+++.++|++|+++||||||||+.||.|.||++||+||+..+ |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~-~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDD-EEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCc-hhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 88999999999999999999999864222 24557788999999999999999999999999999999999854 89999
Q ss_pred EEeecccccCC-CCC-CCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCc
Q 019303 84 LATKFGISFAD-GKR-EIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEAS 161 (343)
Q Consensus 84 i~tK~~~~~~~-~~~-~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 161 (343)
|+||++....+ ++. ..+.++++|+++++.||+|||||||||||+||||+..+.++++++|.+|+++||||+||+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 99999987642 322 2678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-CCeeEEeeeccccccchhhcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhh-ccccchh
Q 019303 162 ASTIRRAHAV-HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQY-LPRFQAE 239 (343)
Q Consensus 162 ~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~-~~~~~~~ 239 (343)
++++.+++.. .+++++|.+||+++|..+.+++++|+++||++++||||++|+|+ +++... ..+.|.. .+.+..+
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Lt-gk~~~~---~~~~r~~~~~~~~~~ 235 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLT-GKYLPG---PEGSRASELPRFQRE 235 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccC-CCcCCC---cchhhccccccchhh
Confidence 9999999999 59999999999999887778999999999999999999999999 764443 2233332 3677777
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhhcc
Q 019303 240 NLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIASA 314 (343)
Q Consensus 240 ~~~~~~~~~~~l~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~~ 314 (343)
.++....+.+.++++|+++|+|++|+||+|++++|.+++||+|+++++||++|++++++.|++++++.|++....
T Consensus 236 ~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 236 LTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 888899999999999999999999999999999999999999999999999999999999999999999988754
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.8e-69 Score=488.37 Aligned_cols=315 Identities=46% Similarity=0.726 Sum_probs=279.9
Q ss_pred cCceeeCCCCCceeCcceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhc--CCCCC
Q 019303 4 AVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRER 81 (343)
Q Consensus 4 ~m~~~~Lg~tg~~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~ 81 (343)
-|++++||++|++||++|||||.+.. |+...++++++++|++|+++|+||||||++||.|.||.++|++|++ .+|++
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~ 89 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDK 89 (336)
T ss_pred cceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCc
Confidence 38899999999999999999975533 4444789999999999999999999999999999999999999998 48999
Q ss_pred EEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCc
Q 019303 82 VELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEAS 161 (343)
Q Consensus 82 ~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 161 (343)
++|+||++... .+....+.+...+.+.++.|++||+++||||||+||+|+..+.++++++|.+++++|||++||+|+++
T Consensus 90 vviaTK~~~~~-~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~s 168 (336)
T KOG1575|consen 90 VVIATKFGFDY-GGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWS 168 (336)
T ss_pred EEEEEEEeccC-CCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCC
Confidence 99999998765 22224567889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC--eeEEeeeccccccchh-hcchHHHHHcCCeEEeccccccccCCCCC-CCCCCCCchhhhh----hc
Q 019303 162 ASTIRRAHAVHP--ITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYSPLGRGFFSSGP-KLVESFSKEDFRQ----YL 233 (343)
Q Consensus 162 ~~~l~~~~~~~~--~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~l~~~~-~~~~~~~~~~~~~----~~ 233 (343)
++++++++...+ +.++|++||++.|..+ .++++.|++.||++++||||++|+|+ |+ ...+..+.++.+. ..
T Consensus 169 a~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Lt-gk~~~~e~~~~~~~~~~~~~~~ 247 (336)
T KOG1575|consen 169 AEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLT-GKYKLGEDSRNGDKRFQFLGLS 247 (336)
T ss_pred HHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceec-cCcccccccccccccccccccc
Confidence 999999999876 9999999999999854 46999999999999999999999999 55 4445555554332 23
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhhc
Q 019303 234 PRFQAENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIAS 313 (343)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~ 313 (343)
|++... ...+.+++++.++|+++|+|++|+||+|+++++.+++||||+++++||+||++|+.+.||++++.+|+++.+
T Consensus 248 ~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~~ 325 (336)
T KOG1575|consen 248 PQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEIID 325 (336)
T ss_pred cccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhhc
Confidence 333332 567788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCc
Q 019303 314 ADAVKGDRYV 323 (343)
Q Consensus 314 ~~~~~~~~~~ 323 (343)
+....+.+|.
T Consensus 326 ~~~~~~~~~~ 335 (336)
T KOG1575|consen 326 KILGFGPRSI 335 (336)
T ss_pred cccCcCCCCC
Confidence 8888877764
No 3
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=2.6e-63 Score=466.39 Aligned_cols=306 Identities=25% Similarity=0.469 Sum_probs=254.2
Q ss_pred cCceeeCCCCCceeCcceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCC--CcHHHHHHHHhhcC---C
Q 019303 4 AVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGP--HTNEILLGKALKGG---M 78 (343)
Q Consensus 4 ~m~~~~Lg~tg~~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~--g~sE~~lG~al~~~---~ 78 (343)
.|+|++||+||++||+||||||+. +|...+.+++.++|+.|+++|||+||||+.||. |.||+.+|++|++. .
T Consensus 12 ~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~ 88 (346)
T PRK09912 12 QMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAY 88 (346)
T ss_pred CcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCC
Confidence 399999999999999999999972 243335677899999999999999999999995 89999999999863 6
Q ss_pred CCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCC
Q 019303 79 RERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLS 158 (343)
Q Consensus 79 R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS 158 (343)
|++++|+||++....++....+.+++.+++++++||+|||+||||+|++|||++..+.++++++|++|+++||||+||||
T Consensus 89 Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGvS 168 (346)
T PRK09912 89 RDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGIS 168 (346)
T ss_pred CCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEec
Confidence 99999999997531122112346899999999999999999999999999999888999999999999999999999999
Q ss_pred CCcHHHHHHHhcC-----CCeeEEeeeccccccchh-hcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhh-
Q 019303 159 EASASTIRRAHAV-----HPITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQ- 231 (343)
Q Consensus 159 n~~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~- 231 (343)
||++++++++.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|+ +++... .+.+....
T Consensus 169 n~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt-~~~~~~-~~~~~~~~~ 246 (346)
T PRK09912 169 SYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLT-GKYLNG-IPQDSRMHR 246 (346)
T ss_pred CCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCcccc-CCCCCC-CCCCccccc
Confidence 9999988765442 467899999999998654 47999999999999999999999999 553221 11111000
Q ss_pred ---hccccchhh-hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhc-CCCCCHHHHH
Q 019303 232 ---YLPRFQAEN-LEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKAL-SVKLTLEEMV 306 (343)
Q Consensus 232 ---~~~~~~~~~-~~~~~~~~~~l~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~-~~~Lt~e~~~ 306 (343)
..+.|.+.. .+..+++.+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||++|++++ .++|++++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~~~ 326 (346)
T PRK09912 247 EGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEELA 326 (346)
T ss_pred cccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHHHH
Confidence 001122111 13345667889999999999999999999999999999999999999999999998 4899999999
Q ss_pred HHHHhhcc
Q 019303 307 ELESIASA 314 (343)
Q Consensus 307 ~l~~~~~~ 314 (343)
.|+++.++
T Consensus 327 ~l~~~~~~ 334 (346)
T PRK09912 327 QIDQHIAD 334 (346)
T ss_pred HHHHhhCc
Confidence 99999865
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2.5e-63 Score=461.72 Aligned_cols=298 Identities=28% Similarity=0.426 Sum_probs=250.8
Q ss_pred eeeCCCCCceeCcceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcC--CCCCEEE
Q 019303 7 RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGG--MRERVEL 84 (343)
Q Consensus 7 ~~~Lg~tg~~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~--~R~~~~i 84 (343)
||+||++|++||+||||||.+ +|...+.+++.++|+.|+++|||+||||+.||.|.||+++|++|+.. +|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 578999999999999999974 23334778899999999999999999999999999999999999852 6999999
Q ss_pred EeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHH
Q 019303 85 ATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASAST 164 (343)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~ 164 (343)
+||++.... .....+.+++.+++++++||+||||||||+|++|||++..+++++|++|++|+++||||+||+|||+.++
T Consensus 78 aTK~~~~~~-~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~ 156 (317)
T TIGR01293 78 TTKIFWGGK-AETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSME 156 (317)
T ss_pred EeeeccCCC-CCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHH
Confidence 999864211 0111356899999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHhcC------CCeeEEeeeccccccch-hhcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhhcc---
Q 019303 165 IRRAHAV------HPITAVQLEWSLWSRDV-EAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLP--- 234 (343)
Q Consensus 165 l~~~~~~------~~~~~~q~~~n~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~--- 234 (343)
++++... .+++++|++||++.+.. +..++++|+++||++++|+||++|+|+ +++... ++.+. +...+
T Consensus 157 l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Lt-g~~~~~-~~~~~-~~~~~~~~ 233 (317)
T TIGR01293 157 IMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVS-GKYDSG-IPPYS-RATLKGYQ 233 (317)
T ss_pred HHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccC-CCCCCC-CCCcc-cccccccc
Confidence 8776432 46789999999999874 568999999999999999999999999 654322 22221 11111
Q ss_pred ccc----hhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcCC--CCCHHHHHHH
Q 019303 235 RFQ----AENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSV--KLTLEEMVEL 308 (343)
Q Consensus 235 ~~~----~~~~~~~~~~~~~l~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~--~Lt~e~~~~l 308 (343)
++. .+........++.+.++|+++|+|++|+||+|++++|+++++|+|+++++||++|+++++. +||++++++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l 313 (317)
T TIGR01293 234 WLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEI 313 (317)
T ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 111 1222334567788999999999999999999999999999999999999999999999997 9999999999
Q ss_pred HHh
Q 019303 309 ESI 311 (343)
Q Consensus 309 ~~~ 311 (343)
+++
T Consensus 314 ~~~ 316 (317)
T TIGR01293 314 DSI 316 (317)
T ss_pred Hhh
Confidence 875
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=4.7e-63 Score=465.27 Aligned_cols=304 Identities=29% Similarity=0.409 Sum_probs=252.9
Q ss_pred CceeeCCCCCceeCcceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCC-------CCcHHHHHHHHhhcC
Q 019303 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYG-------PHTNEILLGKALKGG 77 (343)
Q Consensus 5 m~~~~Lg~tg~~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-------~g~sE~~lG~al~~~ 77 (343)
|+|++||+||++||+||||||++|+ ..+.+++.++|+.|+++|||+||||+.|| .|.||+.+|++|+..
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999863 23678899999999999999999999998 489999999999853
Q ss_pred -CCCCEEEEeecccccCC-CC---CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCC-----------------CCC
Q 019303 78 -MRERVELATKFGISFAD-GK---REIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDT-----------------RVP 135 (343)
Q Consensus 78 -~R~~~~i~tK~~~~~~~-~~---~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~-----------------~~~ 135 (343)
+|++++|+||++..... +. ...+.+++.+++++++||+|||+||||||++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 69999999998642210 00 012468999999999999999999999999999965 246
Q ss_pred HHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhc------CCCeeEEeeeccccccchhhcchHHHHHcCCeEEecccc
Q 019303 136 IEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHA------VHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 136 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~------~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl 209 (343)
++++|++|++|+++||||+||+|||+.++++++.. ...+.++|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 78999999999999999999999999998876543 235789999999999876668999999999999999999
Q ss_pred ccccCCCCCCCCCCCCchhhhhhccccchhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHH
Q 019303 210 GRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENC 289 (343)
Q Consensus 210 ~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l 289 (343)
++|+|+ +++.....+.+......+.|.........++.+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||
T Consensus 237 ~~G~Lt-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l 315 (346)
T PRK10625 237 AFGTLT-GKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQL 315 (346)
T ss_pred cCeecc-CCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHH
Confidence 999999 5532222221111011112211112345567789999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHhhc
Q 019303 290 NQNIKALSVKLTLEEMVELESIAS 313 (343)
Q Consensus 290 ~~nl~a~~~~Lt~e~~~~l~~~~~ 313 (343)
++|+++++++|++++++.|+++.+
T Consensus 316 ~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 316 KTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHHhhccCCCCHHHHHHHHHHHh
Confidence 999999999999999999999975
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.1e-63 Score=444.03 Aligned_cols=258 Identities=33% Similarity=0.485 Sum_probs=231.6
Q ss_pred cCceeeCCCCCceeCcceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhc--CCCCC
Q 019303 4 AVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRER 81 (343)
Q Consensus 4 ~m~~~~Lg~tg~~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~ 81 (343)
+|.+.+| ++|.+||.||||||++++ .+...+.|.+|++.|+|+||||..|| ||+.+|+++++ .+|++
T Consensus 2 ~~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Ree 70 (280)
T COG0656 2 MKTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREE 70 (280)
T ss_pred CCceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHH
Confidence 4667888 577889999999999852 23388999999999999999999999 99999999998 48999
Q ss_pred EEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC--CCHHHHHHHHHHHHHhCCccEEeCCC
Q 019303 82 VELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR--VPIEVTIGELKKLVEEGKIKYIGLSE 159 (343)
Q Consensus 82 ~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~--~~~~~~~~~l~~l~~~G~ir~iGvSn 159 (343)
+||+||++.. +.+++.+.+++++||+|||+||||||+||||.+. ..+.|+|++|++++++||||+|||||
T Consensus 71 lFittKvw~~--------~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSN 142 (280)
T COG0656 71 LFITTKVWPS--------DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSN 142 (280)
T ss_pred eEEEeecCCc--------cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeC
Confidence 9999999975 4578899999999999999999999999999763 33689999999999999999999999
Q ss_pred CcHHHHHHHhcC--CCeeEEeeeccccccchhhcchHHHHHcCCeEEecccccccc-CCCCCCCCCCCCchhhhhhcccc
Q 019303 160 ASASTIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGF-FSSGPKLVESFSKEDFRQYLPRF 236 (343)
Q Consensus 160 ~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~-l~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
|+.++++++++. ..|+++|++||++.+.. +++++|+++||.++|||||+.|. +..
T Consensus 143 F~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~~-------------------- 200 (280)
T COG0656 143 FGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLLD-------------------- 200 (280)
T ss_pred CCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCccccccccc--------------------
Confidence 999999998876 45899999999999964 59999999999999999999643 320
Q ss_pred chhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhhccC
Q 019303 237 QAENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIASAD 315 (343)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~~~ 315 (343)
-+.+.++|++||.|++|++|+|+++++. ++||.+++++|+++|++++++.||+|||+.|+++....
T Consensus 201 -----------~~~l~~Ia~k~g~t~AQv~L~W~i~~gv--~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~ 266 (280)
T COG0656 201 -----------NPVLAEIAKKYGKTPAQVALRWHIQRGV--IVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGY 266 (280)
T ss_pred -----------ChHHHHHHHHhCCCHHHHHHHHHHhCCc--EEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhcccc
Confidence 1278999999999999999999999995 99999999999999999999999999999999998754
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=3.2e-60 Score=440.57 Aligned_cols=286 Identities=28% Similarity=0.407 Sum_probs=243.8
Q ss_pred eeeCCCCCceeCcceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhc--CCCCCEEE
Q 019303 7 RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRERVEL 84 (343)
Q Consensus 7 ~~~Lg~tg~~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~~i 84 (343)
||+||+||++||+||||||++|+.|+. .+.+++.++|++|+++|||+||||+.||.|.||+.+|++|++ .+|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 688999999999999999999876664 477889999999999999999999999999999999999987 36999999
Q ss_pred EeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC---CCHHHHHHHHHHHHHhCCccEEeCCCCc
Q 019303 85 ATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR---VPIEVTIGELKKLVEEGKIKYIGLSEAS 161 (343)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~---~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 161 (343)
+||++.... ..+++++.+++++++||+|||+||||+|++|+|+.. .+++++|++|++|+++||||+||+|||+
T Consensus 80 ~TK~~~~~~----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 155 (314)
T PLN02587 80 STKCGRYGE----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLP 155 (314)
T ss_pred EeccccCCC----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 999985321 135689999999999999999999999999999742 3467899999999999999999999999
Q ss_pred HHHHHHHhcC-----CCeeEEeeeccccccchhhcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhhcccc
Q 019303 162 ASTIRRAHAV-----HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRF 236 (343)
Q Consensus 162 ~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
+++++.+... ..+..+|+.||+.++.. .+++++|+++||++++|+||++|+|+ ++..+. +
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~-~~~~~~-------------~ 220 (314)
T PLN02587 156 LAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLT-ENGPPE-------------W 220 (314)
T ss_pred HHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccC-CCCCCC-------------C
Confidence 9888766542 23444678899887643 48999999999999999999999998 432111 0
Q ss_pred chhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcC----CCCCHHHHHHHHHhh
Q 019303 237 QAENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALS----VKLTLEEMVELESIA 312 (343)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~----~~Lt~e~~~~l~~~~ 312 (343)
.. ..+....+++.++++|+++|+|++|+||+|++++|.|+++|+|+++++||++|+++++ .+|+++++++|+++.
T Consensus 221 ~~-~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~ 299 (314)
T PLN02587 221 HP-APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAIL 299 (314)
T ss_pred CC-CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhh
Confidence 00 0123345677889999999999999999999999999999999999999999999976 379999999999988
Q ss_pred c
Q 019303 313 S 313 (343)
Q Consensus 313 ~ 313 (343)
.
T Consensus 300 ~ 300 (314)
T PLN02587 300 A 300 (314)
T ss_pred c
Confidence 5
No 8
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.2e-58 Score=425.09 Aligned_cols=281 Identities=28% Similarity=0.458 Sum_probs=241.0
Q ss_pred CcccCceeeCCCCCceeCcceeccccCCc--CCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCC
Q 019303 1 MAGAVKRIKLGSQGLEVSAQGLGCMGMSA--FYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGM 78 (343)
Q Consensus 1 ~~~~m~~~~Lg~tg~~vs~lglG~~~~g~--~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~ 78 (343)
|.-+|...++.-+|++||+||||||++|+ .||...+++++.++|+.|+++|||+||||+.||.|.+|+.+|++++. .
T Consensus 1 ~~~~~~~~~~~l~g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~ 79 (290)
T PRK10376 1 MSTIMSSGTFTLGGRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-Y 79 (290)
T ss_pred CcccccCCceecCCeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-C
Confidence 44566544443349999999999999975 46765577889999999999999999999999999999999999975 6
Q ss_pred CCCEEEEeecccccCC-CCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCC-----CCCHHHHHHHHHHHHHhCCc
Q 019303 79 RERVELATKFGISFAD-GKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDT-----RVPIEVTIGELKKLVEEGKI 152 (343)
Q Consensus 79 R~~~~i~tK~~~~~~~-~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~-----~~~~~~~~~~l~~l~~~G~i 152 (343)
|++++|+||++..... +....+.+++.+++++++||+|||+||||+|++|+++. ..+++++|++|++|+++|||
T Consensus 80 R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gki 159 (290)
T PRK10376 80 PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLV 159 (290)
T ss_pred CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCce
Confidence 9999999998754321 11123568999999999999999999999999888521 23578999999999999999
Q ss_pred cEEeCCCCcHHHHHHHhcCCCeeEEeeeccccccchhhcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhh
Q 019303 153 KYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQY 232 (343)
Q Consensus 153 r~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~ 232 (343)
|+||+|||++++++++....+++++|++||++++.. .+++++|+++||++++|+||+++...
T Consensus 160 r~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~~~----------------- 221 (290)
T PRK10376 160 RHIGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFTPL----------------- 221 (290)
T ss_pred eEEEecCCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCChh-----------------
Confidence 999999999999999988889999999999999763 57999999999999999999743100
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhh
Q 019303 233 LPRFQAENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIA 312 (343)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~ 312 (343)
..+.+.++|+++|+|++|+||+|+++++.++++|+|+++++|+++|+++++++|++++++.|+++.
T Consensus 222 --------------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~ 287 (290)
T PRK10376 222 --------------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIA 287 (290)
T ss_pred --------------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 024788999999999999999999998777789999999999999999999999999999999987
Q ss_pred cc
Q 019303 313 SA 314 (343)
Q Consensus 313 ~~ 314 (343)
++
T Consensus 288 ~~ 289 (290)
T PRK10376 288 RE 289 (290)
T ss_pred hc
Confidence 54
No 9
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.2e-58 Score=424.80 Aligned_cols=280 Identities=40% Similarity=0.605 Sum_probs=248.3
Q ss_pred eeeCCCCCceeCcceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCC-CCCEEEE
Q 019303 7 RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGM-RERVELA 85 (343)
Q Consensus 7 ~~~Lg~tg~~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~-R~~~~i~ 85 (343)
+++||+||++||+||||||.++..| .+.+++.++++.|+++|||+||||+.||.|.||+.+|++|++.+ |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999987544 36789999999999999999999999999999999999999865 9999999
Q ss_pred eecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC-HHHHHHHHHHHHHhCCccEEeCCCCcHHH
Q 019303 86 TKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVP-IEVTIGELKKLVEEGKIKYIGLSEASAST 164 (343)
Q Consensus 86 tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~-~~~~~~~l~~l~~~G~ir~iGvSn~~~~~ 164 (343)
||++..... ..+.+++.+++++++||++||+||||+|+||+|+.... ..++|++|++++++|+||+||+|||+++.
T Consensus 78 tK~~~~~~~---~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~ 154 (285)
T cd06660 78 TKVGPRPGD---GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQ 154 (285)
T ss_pred eeecCCCCC---CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHH
Confidence 999865321 13568999999999999999999999999999988766 88999999999999999999999999999
Q ss_pred HHHHhcC--CCeeEEeeeccccccchhhcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhhccccchhhhH
Q 019303 165 IRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLE 242 (343)
Q Consensus 165 l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (343)
+.++... .+|+++|++||++++..+.+++++|+++||++++|+||++|.++.........+.
T Consensus 155 l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~---------------- 218 (285)
T cd06660 155 LEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPE---------------- 218 (285)
T ss_pred HHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCCh----------------
Confidence 9999887 8999999999999997655799999999999999999999998722221111110
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcCCCCCHHHHHHHHH
Q 019303 243 HNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELES 310 (343)
Q Consensus 243 ~~~~~~~~l~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~l~~ 310 (343)
......+..++.+++++++|+|++|++++|.++++|+|+++++||++|+++...+|++++++.|++
T Consensus 219 --~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 219 --GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred --hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 013457899999999999999999999999999999999999999999999999999999999976
No 10
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=5.3e-58 Score=407.53 Aligned_cols=258 Identities=30% Similarity=0.453 Sum_probs=230.4
Q ss_pred eeeCCCCCceeCcceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhc------CCCC
Q 019303 7 RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG------GMRE 80 (343)
Q Consensus 7 ~~~Lg~tg~~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~------~~R~ 80 (343)
+.+| ++|.++|.||||||+. +..+..+.++.|++.||||||||..|+ +|+-+|+||++ .+|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 6788 8999999999999984 567789999999999999999999999 89999999985 3899
Q ss_pred CEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC----------------CCHHHHHHHHH
Q 019303 81 RVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR----------------VPIEVTIGELK 144 (343)
Q Consensus 81 ~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~----------------~~~~~~~~~l~ 144 (343)
++||+||++.. ...++.++.++++||++||+||+|||++|||-.. .+..++|++|+
T Consensus 74 diFiTSKlw~~--------~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE 145 (300)
T KOG1577|consen 74 DIFITSKLWPT--------DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAME 145 (300)
T ss_pred hheeeeccCcc--------ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHH
Confidence 99999999975 3578999999999999999999999999999543 34678999999
Q ss_pred HHHHhCCccEEeCCCCcHHHHHHHhcC--CCeeEEeeeccccccchhhcchHHHHHcCCeEEeccccccccCCCCCCCCC
Q 019303 145 KLVEEGKIKYIGLSEASASTIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVE 222 (343)
Q Consensus 145 ~l~~~G~ir~iGvSn~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~ 222 (343)
+++++|++|+||||||+..+|++++.. .+|.++|+++|++.+ +.+++++|+++||.|.|||||+.+--. .
T Consensus 146 ~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~--Q~~L~~fCk~~~I~v~AYSpLg~~~~~----~-- 217 (300)
T KOG1577|consen 146 KLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQ--QKKLVEFCKSKGIVVTAYSPLGSPGRG----S-- 217 (300)
T ss_pred HHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcC--hHHHHHHHhhCCcEEEEecCCCCCCCc----c--
Confidence 999999999999999999999999877 678999999999887 468999999999999999999975210 0
Q ss_pred CCCchhhhhhccccchhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcCCCCCH
Q 019303 223 SFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTL 302 (343)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~ 302 (343)
.+. --+.+.++|++||.|++|++|||.++++. +|||.++|++|++||++++++.||+
T Consensus 218 ~ll---------------------~~~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~~~~Ri~eN~~vfdf~Lt~ 274 (300)
T KOG1577|consen 218 DLL---------------------EDPVLKEIAKKYNKTPAQILLRWALQRGV--SVIPKSSNPERIKENFKVFDFELTE 274 (300)
T ss_pred ccc---------------------cCHHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEeccCCHHHHHHHHhhccccCCH
Confidence 000 01389999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHhhccC
Q 019303 303 EEMVELESIASAD 315 (343)
Q Consensus 303 e~~~~l~~~~~~~ 315 (343)
||++.|+......
T Consensus 275 ed~~~i~~~~~~~ 287 (300)
T KOG1577|consen 275 EDMKKLDSLNSNE 287 (300)
T ss_pred HHHHHHhhccccc
Confidence 9999999776543
No 11
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.2e-57 Score=417.76 Aligned_cols=276 Identities=33% Similarity=0.505 Sum_probs=231.7
Q ss_pred cceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhc--CCCCCEEEEeecccccCCCC
Q 019303 19 AQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRERVELATKFGISFADGK 96 (343)
Q Consensus 19 ~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~~i~tK~~~~~~~~~ 96 (343)
+||||||++|+. ..+.+++.++|+.|++.|||+||||+.||+|.||+.+|++|++ .+|++++|+||+.. ...
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~---~~~ 74 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYG---DGK 74 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEES---SSS
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccc---ccc
Confidence 589999998642 4689999999999999999999999999999999999999998 69999999999921 112
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC-HHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHH--hcCCC
Q 019303 97 REIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVP-IEVTIGELKKLVEEGKIKYIGLSEASASTIRRA--HAVHP 173 (343)
Q Consensus 97 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~-~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~--~~~~~ 173 (343)
.....+++.+++++++||++||+||||+|++|+|+.... .+++|++|++|+++|+||+||||||+++.++.+ ....+
T Consensus 75 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 154 (283)
T PF00248_consen 75 PEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIP 154 (283)
T ss_dssp TGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-
T ss_pred ccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 235779999999999999999999999999999999888 899999999999999999999999999999999 55588
Q ss_pred eeEEeeeccccccchhhcchHHHHHcCCeEEeccccccccCCCCCC-CCCCCCchhhhhhccccchhhhHHHHHHHHHHH
Q 019303 174 ITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPK-LVESFSKEDFRQYLPRFQAENLEHNKKLFERVN 252 (343)
Q Consensus 174 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 252 (343)
|+++|++||++.+....+++++|+++||++++|+||++|+|+ ++. .....+....+. ......+.+.
T Consensus 155 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~-~~~~~~~~~~~~~~~~-----------~~~~~~~~l~ 222 (283)
T PF00248_consen 155 PDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLT-GKYKSPPPPPSRASLR-----------DAQELADALR 222 (283)
T ss_dssp ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGG-TTTTTTTTSTTTSGSS-----------THGGGHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccCccc-cccccCCCcccccccc-----------hhhhhhhhhh
Confidence 999999999997777789999999999999999999999998 442 222111111000 0233456899
Q ss_pred HHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhh
Q 019303 253 EIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIA 312 (343)
Q Consensus 253 ~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~ 312 (343)
++++++|+|++|+||+|+++++.+.++|+|+++++||++|+++++++||++++++|+++.
T Consensus 223 ~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 223 ELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999875
No 12
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.1e-56 Score=407.29 Aligned_cols=245 Identities=27% Similarity=0.411 Sum_probs=220.2
Q ss_pred eeCcceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhc--CCCCCEEEEeecccccC
Q 019303 16 EVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRERVELATKFGISFA 93 (343)
Q Consensus 16 ~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~~i~tK~~~~~~ 93 (343)
+||+||||||+++ .+++.++++.|++.|||+||||+.|| +|+.+|++|++ .+|+++||+||++..
T Consensus 2 ~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~-- 68 (267)
T PRK11172 2 SIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID-- 68 (267)
T ss_pred CCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC--
Confidence 6999999999863 36789999999999999999999999 79999999985 369999999998632
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC--CCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcC
Q 019303 94 DGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR--VPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV 171 (343)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~--~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 171 (343)
..+++.+++++++||+|||+||||+|++|||++. .+.+++|++|++|+++||||+||||||+.++++++++.
T Consensus 69 ------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~ 142 (267)
T PRK11172 69 ------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAA 142 (267)
T ss_pred ------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHh
Confidence 3578999999999999999999999999999763 56789999999999999999999999999999888764
Q ss_pred ---CCeeEEeeeccccccchhhcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhhccccchhhhHHHHHHH
Q 019303 172 ---HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLF 248 (343)
Q Consensus 172 ---~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (343)
.+++++|++||++.+. .+++++|+++||++++|+||++|.+. ..
T Consensus 143 ~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~-~~------------------------------ 189 (267)
T PRK11172 143 VGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVL-KD------------------------------ 189 (267)
T ss_pred cCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCccc-CC------------------------------
Confidence 3689999999999874 58999999999999999999998654 10
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhhcc
Q 019303 249 ERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIASA 314 (343)
Q Consensus 249 ~~l~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~~ 314 (343)
+.+.++|+++|+|++|+||+|+++++. ++|+|+++++||++|+++++++||++++++|+++.+.
T Consensus 190 ~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 190 PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 257889999999999999999999975 7999999999999999999999999999999998753
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=5.2e-56 Score=406.91 Aligned_cols=268 Identities=20% Similarity=0.259 Sum_probs=227.0
Q ss_pred CceeCcceeccccCCcC-------CCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEe
Q 019303 14 GLEVSAQGLGCMGMSAF-------YGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELAT 86 (343)
Q Consensus 14 g~~vs~lglG~~~~g~~-------~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~t 86 (343)
+++||+||||||+||+. ||. .+++++.++|+.|+++||||||||+.||. ||+.+|++|+...+.+++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFGR--AETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhhh--HHHHHhhhhccCCceEeeccc
Confidence 57899999999999853 443 58899999999999999999999999975 999999999763346788999
Q ss_pred ecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCH-HHHHHHHHHHHHhCCccEEeCCCCcHHH
Q 019303 87 KFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR-VPI-EVTIGELKKLVEEGKIKYIGLSEASAST 164 (343)
Q Consensus 87 K~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~-~~~-~~~~~~l~~l~~~G~ir~iGvSn~~~~~ 164 (343)
|.. +.+++.+++++++||+|||+||||+|++|+|++. .+. +++|++|++|+++||||+||+|||++++
T Consensus 79 k~~----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~ 148 (292)
T PRK14863 79 VRA----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDD 148 (292)
T ss_pred ccc----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHH
Confidence 842 2368999999999999999999999999999763 333 6789999999999999999999999999
Q ss_pred HHHHhcCCCeeEEeeeccccccchh-hcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhhccccchhhhHH
Q 019303 165 IRRAHAVHPITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEH 243 (343)
Q Consensus 165 l~~~~~~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (343)
+..+....+|+++|++||++++..+ .+++++|+++||++++|+||++|+|+ +.. ...+ .. +..
T Consensus 149 ~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~-~~~--~~~~--------~~-----~~~ 212 (292)
T PRK14863 149 PVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLF-LPP--DRVP--------AQ-----LKG 212 (292)
T ss_pred HHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCcccc-CCc--ccCc--------cc-----hhh
Confidence 8888777889999999999998654 46999999999999999999999997 321 0010 00 111
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcCCCCCHHHHHHHHH
Q 019303 244 NKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELES 310 (343)
Q Consensus 244 ~~~~~~~l~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~l~~ 310 (343)
....+..+.+++.++++|++|+||+|++++|.|+++|+|+++++||++|+++.+.+++++.+++|..
T Consensus 213 ~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 213 ASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccC
Confidence 2234567788888899999999999999999999999999999999999999998999988776643
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=7.8e-55 Score=396.50 Aligned_cols=254 Identities=27% Similarity=0.376 Sum_probs=224.1
Q ss_pred ceeeCCCCCceeCcceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcC--CCCCEE
Q 019303 6 KRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGG--MRERVE 83 (343)
Q Consensus 6 ~~~~Lg~tg~~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~--~R~~~~ 83 (343)
++..| ++|+.||+||||||++ +.+++.++|++|++.|||+||||+.|| +|+.+|++|+.. +|++++
T Consensus 5 ~~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~ 72 (275)
T PRK11565 5 TVIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELF 72 (275)
T ss_pred ceEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEE
Confidence 34667 8999999999999986 457899999999999999999999998 799999999863 689999
Q ss_pred EEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHhCCccEEeCCCCcH
Q 019303 84 LATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRV-PIEVTIGELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 84 i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~-~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 162 (343)
|+||++.. +++.+++++++||+|||+||||+|++|+|++.. +..++|++|++|+++|+||+||+|||++
T Consensus 73 i~tK~~~~----------~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 142 (275)
T PRK11565 73 ITTKLWND----------DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQI 142 (275)
T ss_pred EEEEecCc----------chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCH
Confidence 99998632 568999999999999999999999999998753 4789999999999999999999999999
Q ss_pred HHHHHHhcC--CCeeEEeeeccccccchhhcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhhccccchhh
Q 019303 163 STIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAEN 240 (343)
Q Consensus 163 ~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+++++++.. ..++++|++||++.+. .+++++|+++||.+++|+||++|... .+.
T Consensus 143 ~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~~-------------------~~~--- 198 (275)
T PRK11565 143 HHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGKG-------------------VFD--- 198 (275)
T ss_pred HHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCcc-------------------ccc---
Confidence 999888754 3578999999999873 57999999999999999999976210 000
Q ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhhcc
Q 019303 241 LEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIASA 314 (343)
Q Consensus 241 ~~~~~~~~~~l~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~~ 314 (343)
.+.+.++|+++|+|++|+||+|+++++. ++|+|+++++|+++|+++++++|+++++++|+++...
T Consensus 199 -------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~ 263 (275)
T PRK11565 199 -------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQG 263 (275)
T ss_pred -------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhccc
Confidence 1368899999999999999999999976 6899999999999999999999999999999999753
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.8e-54 Score=368.87 Aligned_cols=284 Identities=29% Similarity=0.440 Sum_probs=252.8
Q ss_pred CceeeCCCCCceeCcceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhc--CCCCCE
Q 019303 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRERV 82 (343)
Q Consensus 5 m~~~~Lg~tg~~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~ 82 (343)
|++.+||+.|+++|+|.+|+|++.. |+. +.++...++..|++.|||+||-|+.||+|..|+++|.+|+- ..|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~~--~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WNM--SARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-ccC--CHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 7899999999999999999999853 433 55789999999999999999999999999999999999976 479999
Q ss_pred EEEeecccccCCC----CCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCC
Q 019303 83 ELATKFGISFADG----KREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLS 158 (343)
Q Consensus 83 ~i~tK~~~~~~~~----~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS 158 (343)
.|+||+|...... -...+.|.++|.+++++||+||+|||+|+++||+||+-.+.+|+.+|+..|+++||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999999764311 134688999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHhcC--CCeeEEeeeccccccc-hhhcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhhccc
Q 019303 159 EASASTIRRAHAV--HPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPR 235 (343)
Q Consensus 159 n~~~~~l~~~~~~--~~~~~~q~~~n~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~ 235 (343)
||++.+++-+... .++++||+++|+++.. ..++.+++|+.+.|.+++||||++|.+..|.
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~----------------- 220 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD----------------- 220 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC-----------------
Confidence 9999999887766 4578999999999865 3468999999999999999999998554221
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhhcc
Q 019303 236 FQAENLEHNKKLFERVNEIATRKG-CTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIASA 314 (343)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~a~~~g-~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~~ 314 (343)
++.+.+.+.+..+|.++| +|..+++++|++.+|.-..||+|+.|++++++.++|++..||.++|-+|..+...
T Consensus 221 ------~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G 294 (298)
T COG4989 221 ------DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIG 294 (298)
T ss_pred ------cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 122345678999999999 7999999999999999999999999999999999999999999999999888743
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4.8e-51 Score=350.36 Aligned_cols=309 Identities=24% Similarity=0.316 Sum_probs=252.4
Q ss_pred cCceeeCCCCCceeCcceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEE
Q 019303 4 AVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVE 83 (343)
Q Consensus 4 ~m~~~~Lg~tg~~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~ 83 (343)
+|.||.||+||++||+||||+..++..||. .+.++....+..|+++|||+|||++.||.++||..+|.++++.||+.+|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYy 99 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYY 99 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhee
Confidence 499999999999999999999999988887 3677777777789999999999999999999999999999999999999
Q ss_pred EEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC----CCHHHHHHHHHHHHHhCCccEEeCCC
Q 019303 84 LATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR----VPIEVTIGELKKLVEEGKIKYIGLSE 159 (343)
Q Consensus 84 i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~----~~~~~~~~~l~~l~~~G~ir~iGvSn 159 (343)
|+||++...-+.....+++++.+++++++||+||++||+|++++|..+.. ..+.|++.+|++++++||||+||++.
T Consensus 100 IaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitg 179 (342)
T KOG1576|consen 100 IATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITG 179 (342)
T ss_pred eeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeecc
Confidence 99999976444344578999999999999999999999999999987643 44679999999999999999999999
Q ss_pred CcHHHHHHHhcC--CCeeEEe--eeccccccchhhcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhhccc
Q 019303 160 ASASTIRRAHAV--HPITAVQ--LEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPR 235 (343)
Q Consensus 160 ~~~~~l~~~~~~--~~~~~~q--~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~ 235 (343)
++.+.+.+..+. ..++++- .+|++.+.. .-..+++.+.+|++|+.-++++.|+|+ ....++ ++|
T Consensus 180 ypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt-~~gp~~---------wHP- 247 (342)
T KOG1576|consen 180 YPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLT-NQGPPP---------WHP- 247 (342)
T ss_pred cchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhh-cCCCCC---------CCC-
Confidence 999999988876 3466665 566665543 236788888999999999999999998 321111 112
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhhccC
Q 019303 236 FQAENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIASAD 315 (343)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~~~ 315 (343)
..++..+...+..++|.+.|+..+.+|+.|.++.++++++++|+++.++|+.|+++....||.-+-++...+.++.
T Consensus 248 ----aS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~~~r~~ 323 (342)
T KOG1576|consen 248 ----ASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLRILREI 323 (342)
T ss_pred ----CCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHHHHHHH
Confidence 1234455667788999999999999999999999999999999999999999999877778874334444443320
Q ss_pred CCCCCCCccccccccCCCC
Q 019303 316 AVKGDRYVGKASTYEDSET 334 (343)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~ 334 (343)
++ +-++..|++...
T Consensus 324 -~~----~~kn~~W~g~~~ 337 (342)
T KOG1576|consen 324 -LK----ETKNEEWEGGIL 337 (342)
T ss_pred -hh----hhccCCCCCCCC
Confidence 00 113457776654
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=3.5e-50 Score=360.93 Aligned_cols=272 Identities=29% Similarity=0.368 Sum_probs=240.6
Q ss_pred CceeeCCCCCceeCcceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEE
Q 019303 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVEL 84 (343)
Q Consensus 5 m~~~~Lg~tg~~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i 84 (343)
|.||++|+||.++|.||||||++-..|+...|.+.+.++|++|+++||||||||..|..|.||..+|+||++..|++|++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 89999999999999999999998765666678999999999999999999999999988889999999999989999999
Q ss_pred EeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHH-----HHHHHHHHHHHhCCccEEeCCC
Q 019303 85 ATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIE-----VTIGELKKLVEEGKIKYIGLSE 159 (343)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~-----~~~~~l~~l~~~G~ir~iGvSn 159 (343)
+||+.... --+.+.+++-++++|++||+||+|+|+||..+. ..++ ..++.+++++++|+||++|+|.
T Consensus 81 aTKlp~~~-------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFSf 152 (391)
T COG1453 81 ATKLPSWP-------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFSF 152 (391)
T ss_pred EeecCCcc-------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeecC
Confidence 99998542 347899999999999999999999999999977 3343 3699999999999999999999
Q ss_pred Cc-HHHHHHHhcCCCeeEEeeeccccccchh--hcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhhcccc
Q 019303 160 AS-ASTIRRAHAVHPITAVQLEWSLWSRDVE--AEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRF 236 (343)
Q Consensus 160 ~~-~~~l~~~~~~~~~~~~q~~~n~~~~~~~--~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
|+ .+.+.+++...+++++|++||.++.... .+.+.+|.++|++|+.++|+.+|-|. . .+ |
T Consensus 153 Hgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~-~-----~v---------P-- 215 (391)
T COG1453 153 HGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLL-Y-----NV---------P-- 215 (391)
T ss_pred CCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcc-c-----CC---------C--
Confidence 85 5678889988999999999999997643 38899999999999999999998766 1 11 1
Q ss_pred chhhhHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcCC--C-CCHHHHHHHHHh
Q 019303 237 QAENLEHNKKLFERVNEIATRKG--CTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSV--K-LTLEEMVELESI 311 (343)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~a~~~g--~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~--~-Lt~e~~~~l~~~ 311 (343)
+++.++++.++ .||+.+|+||++++|.|+++++|+++++|++||++..+. + ||++|.+.|.++
T Consensus 216 ------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v 283 (391)
T COG1453 216 ------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKV 283 (391)
T ss_pred ------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 36778888765 589999999999999999999999999999999998864 3 999999888777
Q ss_pred hc
Q 019303 312 AS 313 (343)
Q Consensus 312 ~~ 313 (343)
.+
T Consensus 284 ~~ 285 (391)
T COG1453 284 EE 285 (391)
T ss_pred HH
Confidence 64
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.84 E-value=3.3e-05 Score=66.79 Aligned_cols=71 Identities=20% Similarity=0.201 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcC--CCeeEEeeeccccccchhhcchHHHHHcCCeEEecc
Q 019303 136 IEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 136 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 207 (343)
+.+.|+.|++++.+|+|..||+|.|++.+|++++.. ..|.++|+...-.+.-+ .++..+|.+++|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 346899999999999999999999999999999876 56788898777655443 589999999999988765
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.07 E-value=2.5 Score=39.24 Aligned_cols=156 Identities=13% Similarity=0.059 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 115 (343)
+.++..+.++.+.+.|++.|+.--.-......+.+ +++++.-. ++-|.-+... .++.+.. ..+-+.|+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v-~~lr~~~g-~~~l~vD~n~---------~~~~~~A-~~~~~~l~ 201 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERI-RAIREAAP-DARLRVDANQ---------GWTPEEA-VELLRELA 201 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHH-HHHHHhCC-CCeEEEeCCC---------CcCHHHH-HHHHHHHH
Confidence 55667788888899999999975311110122233 34443222 5666666543 2355443 33445555
Q ss_pred HcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCcc-EEeCCCCcHHHHHHHhcCCCeeEEeeecccccc-chhhcch
Q 019303 116 RLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIV 193 (343)
Q Consensus 116 ~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~ 193 (343)
.++++ ++-.|-+. +-++.+.+|++...|. ..|=+-++.+.++++++....+++|+.-+..-. ..-..+.
T Consensus 202 ~~~l~-----~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~ 272 (316)
T cd03319 202 ELGVE-----LIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIA 272 (316)
T ss_pred hcCCC-----EEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHH
Confidence 55543 33444322 2366777888887776 345566889999999998889999998665432 1124789
Q ss_pred HHHHHcCCeEEeccccccc
Q 019303 194 PTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 194 ~~~~~~gi~v~a~spl~~G 212 (343)
.+|+++||.++..+-+..+
T Consensus 273 ~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 273 DLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHcCCCEEEECchhhH
Confidence 9999999999887655443
No 20
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=86.08 E-value=27 Score=32.82 Aligned_cols=152 Identities=13% Similarity=0.094 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCC------CcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGP------HTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAA 109 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~------g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 109 (343)
+.++..+.++.+.+.|++.|-.--..+. -...+.+ +++++.-.+++.|...... .++.+...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~g~~~~l~vDaN~---------~~~~~~a~~- 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAVGPDVDLMVDANG---------RWDLAEAIR- 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhhCCCCEEEEECCC---------CCCHHHHHH-
Confidence 3566777788888999999875432221 0112222 3444422345555555421 345544433
Q ss_pred HHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCcc-EEeCCCCcHHHHHHHhcCCCeeEEeeeccccccc-
Q 019303 110 CEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSRD- 187 (343)
Q Consensus 110 ~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~- 187 (343)
-+++|. ..++.++..|-+. +.++.+.++++.-.|. ..|=|.++++.+.++++....+++|+.....-.-
T Consensus 208 ---~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 278 (357)
T cd03316 208 ---LARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGIT 278 (357)
T ss_pred ---HHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 333332 2245556666432 2466778888876665 4455667899999999887889998876654321
Q ss_pred hhhcchHHHHHcCCeEEecc
Q 019303 188 VEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 188 ~~~~l~~~~~~~gi~v~a~s 207 (343)
.-..+...|+++|+.++..+
T Consensus 279 ~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 279 EAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHHHHHHHHcCCeEeccC
Confidence 12478999999999987765
No 21
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.02 E-value=6.3 Score=37.67 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcC
Q 019303 39 DMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLD 118 (343)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~ 118 (343)
....++++|++.|++++|||...- ....+.... .+..+.+..-+|.. +..+--.....+++--+ .
T Consensus 80 ~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~a---~~Agit~v~~~G~d-------PGi~nv~a~~a~~~~~~--~ 144 (389)
T COG1748 80 VDLTILKACIKTGVDYVDTSYYEE---PPWKLDEEA---KKAGITAVLGCGFD-------PGITNVLAAYAAKELFD--E 144 (389)
T ss_pred hhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHHH---HHcCeEEEcccCcC-------cchHHHHHHHHHHHhhc--c
Confidence 345889999999999999998765 322222222 34556666666654 23333333333333333 5
Q ss_pred CCcccEEEeecCCCC
Q 019303 119 IDCIDLYYQHRIDTR 133 (343)
Q Consensus 119 ~d~iDl~~lH~p~~~ 133 (343)
+++||+|..+-|++.
T Consensus 145 i~si~iy~g~~g~~~ 159 (389)
T COG1748 145 IESIDIYVGGLGEHG 159 (389)
T ss_pred ccEEEEEEecCCCCC
Confidence 899999999998765
No 22
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=81.97 E-value=29 Score=32.25 Aligned_cols=133 Identities=11% Similarity=0.026 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc---C-----CCCCC----cHHHHHHHHhhcC---CCCCEEEEeecccccCCCCCCCC
Q 019303 36 PESDMIALIHHAINSGITLLDTS---D-----IYGPH----TNEILLGKALKGG---MRERVELATKFGISFADGKREIR 100 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA---~-----~Yg~g----~sE~~lG~al~~~---~R~~~~i~tK~~~~~~~~~~~~~ 100 (343)
+.++..+....+.+.|+..||-- + .||.| ..-+.+.+.++.. -.+++-|+.|+...+.
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC-------
Confidence 56777777778888999999943 2 35554 2334455555442 1224778888764321
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHH-H--HHHHHHHHHHhCCccEEeCCC-CcHHHHHHHhcCCCeeE
Q 019303 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIE-V--TIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITA 176 (343)
Q Consensus 101 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~-~--~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~~ 176 (343)
+.+.. ..+-+.++..| +|.+.+|.-....... . -|+...++++.-.|--||..+ .++++..++++....+.
T Consensus 146 -~~~~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~Dg 220 (312)
T PRK10550 146 -SGERK-FEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDA 220 (312)
T ss_pred -CchHH-HHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCE
Confidence 11222 35666677777 5777788643222111 1 267777888877788888777 47888888887777777
Q ss_pred Eeee
Q 019303 177 VQLE 180 (343)
Q Consensus 177 ~q~~ 180 (343)
+++-
T Consensus 221 VmiG 224 (312)
T PRK10550 221 VMIG 224 (312)
T ss_pred EEEc
Confidence 7663
No 23
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=81.45 E-value=40 Score=30.24 Aligned_cols=157 Identities=15% Similarity=0.145 Sum_probs=94.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 115 (343)
+.++..+.++.+.+.|++.|-.--.-.. ..+.-.=+++++.-.+++.|.-... ..++.+...+-+ +.|+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~-~~d~~~v~~vr~~~g~~~~l~vDan---------~~~~~~~a~~~~-~~l~ 153 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDP-ARDVAVVAALREAVGDDAELRVDAN---------RGWTPKQAIRAL-RALE 153 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCH-HHHHHHHHHHHHhcCCCCEEEEeCC---------CCcCHHHHHHHH-HHHH
Confidence 4466677778888999998876432111 1111122344442233454433332 234555444332 3445
Q ss_pred HcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCcc-EEeCCCCcHHHHHHHhcCCCeeEEeeecccccc-chhhcch
Q 019303 116 RLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIV 193 (343)
Q Consensus 116 ~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~ 193 (343)
.++ +.++..|-+. +.++.+.++++.-.+. ..|=+-++.+.+.++++...++++|+..+..-. ..-..+.
T Consensus 154 ~~~-----i~~iEeP~~~----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~ 224 (265)
T cd03315 154 DLG-----LDYVEQPLPA----DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVL 224 (265)
T ss_pred hcC-----CCEEECCCCc----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHH
Confidence 544 4445566432 2356777788776665 445566788999988888888999988766442 1225789
Q ss_pred HHHHHcCCeEEeccccccc
Q 019303 194 PTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 194 ~~~~~~gi~v~a~spl~~G 212 (343)
..|+++|+.++..+.+..+
T Consensus 225 ~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 225 AVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHcCCcEEecCccchH
Confidence 9999999999987666544
No 24
>PRK07945 hypothetical protein; Provisional
Probab=80.92 E-value=22 Score=33.41 Aligned_cols=103 Identities=15% Similarity=0.100 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHcCCCeEeCcCCCCC-----CcHHHHHHHHh------hcCCCC-CEEEEeecccccCCCCCCCCCCHHHH
Q 019303 39 DMIALIHHAINSGITLLDTSDIYGP-----HTNEILLGKAL------KGGMRE-RVELATKFGISFADGKREIRGDPAYV 106 (343)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DTA~~Yg~-----g~sE~~lG~al------~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~i 106 (343)
...+++++|.+.|+..+=.++|... +.+...+-+.+ ++.-++ +|++.--+... ++.+.+.
T Consensus 112 ~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~d~~-------~~g~~~~- 183 (335)
T PRK07945 112 PIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEVDIL-------DDGSLDQ- 183 (335)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEeccc-------CCCCcch-
Confidence 3668999999999998877766421 11222222222 221122 22222222221 1112222
Q ss_pred HHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEe
Q 019303 107 RAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIG 156 (343)
Q Consensus 107 ~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iG 156 (343)
.++.|+. .||+ +..+|+... .+.++..+.|.++.+.+.+.-+|
T Consensus 184 ---~~~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlg 226 (335)
T PRK07945 184 ---EPELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLG 226 (335)
T ss_pred ---hHHHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEe
Confidence 2333443 5676 778898643 33466778888888888877777
No 25
>PRK08392 hypothetical protein; Provisional
Probab=80.74 E-value=37 Score=29.46 Aligned_cols=146 Identities=16% Similarity=0.127 Sum_probs=73.6
Q ss_pred HHHHHHHHHHcCCCeEeCcCCCCCC---cHHHHHHHH--hhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHH
Q 019303 40 MIALIHHAINSGITLLDTSDIYGPH---TNEILLGKA--LKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASL 114 (343)
Q Consensus 40 ~~~~l~~A~~~Gi~~~DTA~~Yg~g---~sE~~lG~a--l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 114 (343)
..++++.|.+.|++.|=.+++.... .-+..+-+. +++..+=++++..-++.. +.. ....++.+
T Consensus 16 ~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~-----------~~~-~~~~~~~~ 83 (215)
T PRK08392 16 VRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANIT-----------PNG-VDITDDFA 83 (215)
T ss_pred HHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeec-----------CCc-chhHHHHH
Confidence 5688999999999999777665311 011112111 222111122222222221 111 12333444
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCC-------Cc-HHHHHHH----hcC-CCeeEEeeec
Q 019303 115 KRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSE-------AS-ASTIRRA----HAV-HPITAVQLEW 181 (343)
Q Consensus 115 ~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn-------~~-~~~l~~~----~~~-~~~~~~q~~~ 181 (343)
++ .||+ +..+|........++..+.+.++.+.|.+.-+|=-. .. .+.++++ .+. ..+.+|
T Consensus 84 ~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiN---- 156 (215)
T PRK08392 84 KK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEIS---- 156 (215)
T ss_pred hh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEe----
Confidence 43 4666 677884322233567788888889999866665321 11 1232222 222 222333
Q ss_pred cccccchhhcchHHHHHcCCeEEe
Q 019303 182 SLWSRDVEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 182 n~~~~~~~~~l~~~~~~~gi~v~a 205 (343)
-..+.+...+++.|++.|+.++.
T Consensus 157 -t~~~~p~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 157 -SRYRVPDLEFIRECIKRGIKLTF 179 (215)
T ss_pred -CCCCCCCHHHHHHHHHcCCEEEE
Confidence 21222345789999999977543
No 26
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=79.21 E-value=13 Score=33.16 Aligned_cols=106 Identities=14% Similarity=0.099 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhC-CccEEeCCCCcHHHHHHHhcCCCeeEEe
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEG-KIKYIGLSEASASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G-~ir~iGvSn~~~~~l~~~~~~~~~~~~q 178 (343)
.++.+...+ +-+.|..+|+++|.+-..-.+......++.++.++.+++.+ .++...++.-..+.++.+.+.. ++.++
T Consensus 15 ~~s~e~~~~-i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~ 92 (265)
T cd03174 15 TFSTEDKLE-IAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVR 92 (265)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEE
Confidence 446666555 44557889998888765543321111245688888898888 5676677765566777776653 56666
Q ss_pred eeccccc--------cch------hhcchHHHHHcCCeEEecc
Q 019303 179 LEWSLWS--------RDV------EAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 179 ~~~n~~~--------~~~------~~~l~~~~~~~gi~v~a~s 207 (343)
+.+.... +.. -...+.+++++|+.+...-
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 6655441 111 1367888899998876544
No 27
>PRK08609 hypothetical protein; Provisional
Probab=77.68 E-value=19 Score=36.48 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=81.7
Q ss_pred HHHHHHHHHHcCCCeEeCcCCCC-----CCcHHHHHHHH------hhc-CCCCCEEEEeecccccCCCCCCCCCCHHHHH
Q 019303 40 MIALIHHAINSGITLLDTSDIYG-----PHTNEILLGKA------LKG-GMRERVELATKFGISFADGKREIRGDPAYVR 107 (343)
Q Consensus 40 ~~~~l~~A~~~Gi~~~DTA~~Yg-----~g~sE~~lG~a------l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~ 107 (343)
..++++.|.+.|+.+|=.++|+. .|.+...+-.. +++ ...=+|++..-+... ++...
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~-----------~~g~~ 419 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDIL-----------PDGSL 419 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeec-----------CCcch
Confidence 45699999999999998888862 12233322222 222 111133333333322 11112
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCC---------Cc--HHHHHHHhcCCCeeE
Q 019303 108 AACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSE---------AS--ASTIRRAHAVHPITA 176 (343)
Q Consensus 108 ~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn---------~~--~~~l~~~~~~~~~~~ 176 (343)
.-.+..|+. .||+ +.-+|++ ...+.+++.+.+.++.+.|.+.-||=-. +. .+.+.+++.... .+
T Consensus 420 d~~~~~L~~--~D~v-I~SvH~~-~~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~~ 494 (570)
T PRK08609 420 DYDDEVLAE--LDYV-IAAIHSS-FSQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-TA 494 (570)
T ss_pred hhcHHHHHh--hCEE-EEEeecC-CCCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-CE
Confidence 223334554 4776 7788975 3345677888999999888877665332 11 122222221122 35
Q ss_pred EeeeccccccchhhcchHHHHHcCCeEE
Q 019303 177 VQLEWSLWSRDVEAEIVPTCRELGIGIV 204 (343)
Q Consensus 177 ~q~~~n~~~~~~~~~l~~~~~~~gi~v~ 204 (343)
+|+.-+.+.......++..|.+.|+.++
T Consensus 495 lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 495 LELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 5555554433334578888999998653
No 28
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=75.86 E-value=7.4 Score=33.79 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=45.4
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCC-CCcHHHHHHHhcCCCeeEEeeec
Q 019303 113 SLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEW 181 (343)
Q Consensus 113 sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~ 181 (343)
....+|.||+=+++...-....+.+.+ +.+.+.. .+.++.+||. |-+++.+.++.+...++++|++-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 345699999998743322222344433 3333322 3568899995 78899999999888899999864
No 29
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=75.79 E-value=62 Score=29.27 Aligned_cols=29 Identities=7% Similarity=0.021 Sum_probs=18.9
Q ss_pred eeEEeeeccccccchhhcchHHHHHcCCe
Q 019303 174 ITAVQLEWSLWSRDVEAEIVPTCRELGIG 202 (343)
Q Consensus 174 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 202 (343)
+-+++.-||+..+.-.+..++.|++.|+.
T Consensus 96 Pivlm~Y~Npi~~~Gie~F~~~~~~~Gvd 124 (265)
T COG0159 96 PIVLMTYYNPIFNYGIEKFLRRAKEAGVD 124 (265)
T ss_pred CEEEEEeccHHHHhhHHHHHHHHHHcCCC
Confidence 45667777776654445667777777765
No 30
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=75.76 E-value=36 Score=30.65 Aligned_cols=101 Identities=21% Similarity=0.121 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-eecCCCC-CCHHH----HHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCCCe
Q 019303 101 GDPAYVRAACEASLKRLDIDCIDLYY-QHRIDTR-VPIEV----TIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPI 174 (343)
Q Consensus 101 ~~~~~i~~~~~~sL~~L~~d~iDl~~-lH~p~~~-~~~~~----~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 174 (343)
.+.+.+.+...+.+ +-|-|+||+=- -.+|+.. .+.++ +...++.+++.-.+. +-+-++.++.++++++...
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~- 97 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGA- 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCC-
Confidence 45566655555443 55889999842 2344432 22332 333456666553333 7888999999999998752
Q ss_pred eEEeeeccccccchhhcchHHHHHcCCeEEecc
Q 019303 175 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 175 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 207 (343)
+. -+..+.... ..++++.++++|..++.+.
T Consensus 98 ~i-INdisg~~~--~~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 98 DI-INDVSGGSD--DPAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred CE-EEeCCCCCC--ChHHHHHHHHcCCCEEEEC
Confidence 22 233344332 2578999999999999844
No 31
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=75.58 E-value=17 Score=32.38 Aligned_cols=108 Identities=19% Similarity=0.134 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHH--------------------HHhhcCCCCCEEEEeecccccCC
Q 019303 35 KPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLG--------------------KALKGGMRERVELATKFGISFAD 94 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG--------------------~al~~~~R~~~~i~tK~~~~~~~ 94 (343)
.+.++-.++.++|-+.||.||=|.-.-. +-..+- +.+.+ ...-++|+|=..
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~s----- 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMS----- 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHH-hCCcEEEECCCC-----
Confidence 3678889999999999999997765322 222221 11111 334466666443
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCC-CCCHHH-HHHHHHHHHHhCCccEEeCCCCcH
Q 019303 95 GKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDT-RVPIEV-TIGELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~-~~~~~~-~~~~l~~l~~~G~ir~iGvSn~~~ 162 (343)
+.+.|.++++...++-+ -++.++|+... ..+.++ -++.|..|++.=- --||+|.|+.
T Consensus 124 -------tl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~ 182 (241)
T PF03102_consen 124 -------TLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTD 182 (241)
T ss_dssp --------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SS
T ss_pred -------CHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCC
Confidence 55677777766644443 69999999853 345554 3777777776522 5789999875
No 32
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=75.44 E-value=43 Score=30.01 Aligned_cols=103 Identities=18% Similarity=0.105 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-eecCCCC-CC----HHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCCCe
Q 019303 101 GDPAYVRAACEASLKRLDIDCIDLYY-QHRIDTR-VP----IEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPI 174 (343)
Q Consensus 101 ~~~~~i~~~~~~sL~~L~~d~iDl~~-lH~p~~~-~~----~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 174 (343)
.+.+.+.+..++.+ .-|-|+||+=- --+|+.. .+ .+.+...++.+++.-.+ -|.+-++.++.++.+++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 45666666655554 66899999852 2334321 11 23355666666655333 378899999999999987622
Q ss_pred eEEeeeccccccchhhcchHHHHHcCCeEEecccc
Q 019303 175 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 175 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl 209 (343)
+-+..+.... ..++++.++++|..++.+..-
T Consensus 99 --iINdis~~~~--~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 99 --IINDVSGGRG--DPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred --EEEeCCCCCC--ChHHHHHHHHcCCCEEEECcC
Confidence 2233333322 257899999999998886543
No 33
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=75.23 E-value=66 Score=29.34 Aligned_cols=151 Identities=11% Similarity=0.129 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc----------CCCCCCcHHHHHHHHhhcCCCC-CEEEEeecccccCCCCCCCCCCHH
Q 019303 36 PESDMIALIHHAINSGITLLDTS----------DIYGPHTNEILLGKALKGGMRE-RVELATKFGISFADGKREIRGDPA 104 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA----------~~Yg~g~sE~~lG~al~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~ 104 (343)
+.++..+..+.+.+.|+..||.- ..|+. +.+.+-+.++...+. ++-|..|+.+. . +
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~--~~~~~~eiv~~vr~~~~~Pv~vKl~~~---------~--~ 166 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGT--DPEAVAEIVKAVKKATDVPVIVKLTPN---------V--T 166 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccC--CHHHHHHHHHHHHhccCCCEEEEeCCC---------c--h
Confidence 45677788888888999999873 22332 556666666553222 67788898643 1 1
Q ss_pred HHHHHHHHHHHHcCCCcccEEE------eecCC--C-----------CCCHHHHHHHHHHHHHhCCccEEeCCCC-cHHH
Q 019303 105 YVRAACEASLKRLDIDCIDLYY------QHRID--T-----------RVPIEVTIGELKKLVEEGKIKYIGLSEA-SAST 164 (343)
Q Consensus 105 ~i~~~~~~sL~~L~~d~iDl~~------lH~p~--~-----------~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~ 164 (343)
.+ ..+-+.+...|.|.|++.- +|.-. + .....-.++.+.++++.=.|.-||+... +++.
T Consensus 167 ~~-~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~d 245 (296)
T cd04740 167 DI-VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGED 245 (296)
T ss_pred hH-HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 22 2344567788987776531 11100 0 0001124677777777667888998884 7888
Q ss_pred HHHHhcCCCeeEEeeeccccc-c----chhhcchHHHHHcCC
Q 019303 165 IRRAHAVHPITAVQLEWSLWS-R----DVEAEIVPTCRELGI 201 (343)
Q Consensus 165 l~~~~~~~~~~~~q~~~n~~~-~----~~~~~l~~~~~~~gi 201 (343)
+.+++... .+.+|+-=.++. + ...+++.++.+++|.
T Consensus 246 a~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 246 ALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 88888654 577876433332 1 122456666666664
No 34
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=73.96 E-value=11 Score=32.17 Aligned_cols=150 Identities=20% Similarity=0.212 Sum_probs=93.0
Q ss_pred HHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHH-----------H
Q 019303 42 ALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAA-----------C 110 (343)
Q Consensus 42 ~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~-----------~ 110 (343)
+++..-++-|-+.+|-.-..| .+-+.|++ .+ ++.. .| ...+++.+.++ +
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG------~LL~~L~~-~k-~v~g---~G---------vEid~~~v~~cv~rGv~Viq~Dl 64 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG------ELLAYLKD-EK-QVDG---YG---------VEIDPDNVAACVARGVSVIQGDL 64 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch------HHHHHHHH-hc-CCeE---EE---------EecCHHHHHHHHHcCCCEEECCH
Confidence 455566677888888776555 13355544 11 1110 01 13345555555 4
Q ss_pred HHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhc--CCCeeEEeeeccccccc-
Q 019303 111 EASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHA--VHPITAVQLEWSLWSRD- 187 (343)
Q Consensus 111 ~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~--~~~~~~~q~~~n~~~~~- 187 (343)
++.|....-+.+|.+.+..--. .....-..|+++.+-|+-.-|++.||.-+..+..+- ---|.+-..+|+-++..
T Consensus 65 d~gL~~f~d~sFD~VIlsqtLQ--~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPN 142 (193)
T PF07021_consen 65 DEGLADFPDQSFDYVILSQTLQ--AVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPN 142 (193)
T ss_pred HHhHhhCCCCCccEEehHhHHH--hHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCC
Confidence 4555556556666666654211 122334567788888998889999999887665443 23355667777776642
Q ss_pred ----hhhcchHHHHHcCCeEEecccccccc
Q 019303 188 ----VEAEIVPTCRELGIGIVAYSPLGRGF 213 (343)
Q Consensus 188 ----~~~~l~~~~~~~gi~v~a~spl~~G~ 213 (343)
.-.+..++|++.||.|.-..++.++.
T Consensus 143 ih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 143 IHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred cccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 12588999999999999999998764
No 35
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=73.73 E-value=24 Score=34.25 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEe-ecCCCC----------CCH-H---HHHHHH-HHHHHhCCccEEeCCCCcH
Q 019303 101 GDPAYVRAACEASLKRLDIDCIDLYYQ-HRIDTR----------VPI-E---VTIGEL-KKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 101 ~~~~~i~~~~~~sL~~L~~d~iDl~~l-H~p~~~----------~~~-~---~~~~~l-~~l~~~G~ir~iGvSn~~~ 162 (343)
-+.+.+.+.++..+ .|+.|+|.+|.+ |-|... .+. + +.++.. +.|.+.|. +.+|+|||.-
T Consensus 201 QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 201 QTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 36777777777665 478999999977 444210 111 1 344444 44555666 9999999975
No 36
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=73.44 E-value=9.3 Score=36.17 Aligned_cols=211 Identities=19% Similarity=0.137 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHH---HHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLG---KALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEA 112 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG---~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 112 (343)
+.++..+.|+.|.+.|++.+=|+=+...+..+..+. +.++......+.|..=+.+..-. ....+.+.+ .
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~---~lg~~~~dl-----~ 83 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLK---KLGISYDDL-----S 83 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHH---TTT-BTTBT-----H
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH---HcCCCHHHH-----H
Confidence 577889999999999999999998776433332222 22221233445555444432000 001111111 2
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCC-CeeEEeeeccccccchh--
Q 019303 113 SLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH-PITAVQLEWSLWSRDVE-- 189 (343)
Q Consensus 113 sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~-- 189 (343)
.++.||++.|= .|...+.+ .+.+|-+.|.--.+=.|+.+.+.+..+.+.. .++-+..-+|.+-+...
T Consensus 84 ~~~~lGi~~lR------lD~Gf~~~----~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGL 153 (357)
T PF05913_consen 84 FFKELGIDGLR------LDYGFSGE----EIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTGL 153 (357)
T ss_dssp HHHHHT-SEEE------ESSS-SCH----HHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-SB
T ss_pred HHHHcCCCEEE------ECCCCCHH----HHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCCC
Confidence 35566654332 13333333 3334444477667778888888888887763 23333333344333211
Q ss_pred -----hcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhhccccchhhhHHHHHHHHHHHHHHHHhCCCHHH
Q 019303 190 -----AEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCTPSQ 264 (343)
Q Consensus 190 -----~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~aq 264 (343)
.+.=.+.++.||.+.|+-|--.+. . |+ ..+.+|.-+ +|---+..
T Consensus 154 s~~~f~~~n~~~k~~gi~~~AFI~g~~~~-r-GP-l~~GLPTlE----------------------------~hR~~~p~ 202 (357)
T PF05913_consen 154 SEEFFIEKNQLLKEYGIKTAAFIPGDENK-R-GP-LYEGLPTLE----------------------------KHRNLPPY 202 (357)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEEE--SSS--B-TT-T-S--BSBG----------------------------GGTTS-HH
T ss_pred CHHHHHHHHHHHHHCCCcEEEEecCCCcc-c-CC-ccCCCCccH----------------------------HHcCCCHH
Confidence 234456789999999988765321 1 22 111122111 12222345
Q ss_pred HHHHHHHhCCCCeEeccCCC--CHHHHHHHHhh
Q 019303 265 LALAWVHHQGDDVCPIPGTT--KVENCNQNIKA 295 (343)
Q Consensus 265 lal~w~l~~~~v~~~i~g~~--~~~~l~~nl~a 295 (343)
+|...+...+.+.-|++|-. +.+.+++....
T Consensus 203 ~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 203 AAALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp HHHHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred HHHHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 57778888888889999876 45555555444
No 37
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=72.08 E-value=89 Score=29.44 Aligned_cols=16 Identities=13% Similarity=0.057 Sum_probs=11.2
Q ss_pred HHHHHHcCCCeEeCcC
Q 019303 44 IHHAINSGITLLDTSD 59 (343)
Q Consensus 44 l~~A~~~Gi~~~DTA~ 59 (343)
.+.|.++|+..++--.
T Consensus 143 A~~a~~aGfDgVeih~ 158 (353)
T cd02930 143 AALAREAGYDGVEIMG 158 (353)
T ss_pred HHHHHHcCCCEEEEec
Confidence 3445678999998743
No 38
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=70.14 E-value=78 Score=28.52 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcC--CCeeEEee
Q 019303 102 DPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV--HPITAVQL 179 (343)
Q Consensus 102 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~--~~~~~~q~ 179 (343)
+.+.+.+...+. ..-|-|+||+=.- +......+.+...++.+++.-.+ -|-+-+++++.++.+++. ...-+ +
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iI--N 96 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLI--N 96 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEE--E
Confidence 445555544443 4668999998532 11122233455556666554222 378888999999999886 33222 3
Q ss_pred eccccccchhhcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhhccccchhhhHHHHHHHHHHHHHHHHhC
Q 019303 180 EWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKG 259 (343)
Q Consensus 180 ~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g 259 (343)
..|..... .+.+++.++++|..++...--..|. +. ..+...+.++.+.+.|.++|
T Consensus 97 sIs~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~-------P~-----------------t~~~~~~~l~~~v~~a~~~G 151 (261)
T PRK07535 97 SVSAEGEK-LEVVLPLVKKYNAPVVALTMDDTGI-------PK-----------------DAEDRLAVAKELVEKADEYG 151 (261)
T ss_pred eCCCCCcc-CHHHHHHHHHhCCCEEEEecCCCCC-------CC-----------------CHHHHHHHHHHHHHHHHHcC
Confidence 33332211 3478999999999998754322231 00 01222344556667777888
Q ss_pred CCHHHH
Q 019303 260 CTPSQL 265 (343)
Q Consensus 260 ~s~aql 265 (343)
+++.++
T Consensus 152 I~~~~I 157 (261)
T PRK07535 152 IPPEDI 157 (261)
T ss_pred CCHhHE
Confidence 876554
No 39
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=69.94 E-value=91 Score=29.80 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=41.1
Q ss_pred eeCcceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCC----cHHHHHHHHhhc-----CCCCCEEEEe
Q 019303 16 EVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPH----TNEILLGKALKG-----GMRERVELAT 86 (343)
Q Consensus 16 ~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g----~sE~~lG~al~~-----~~R~~~~i~t 86 (343)
.|-+++.|==+. |+.-.+..++.+.|..|+..|- ...|+.. .+-+.+.+.+.+ ...++|||++
T Consensus 62 ~iipl~~GDPsv---~~~~~ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~lts 133 (447)
T KOG0259|consen 62 PILPLGHGDPSV---YPCFRTSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTS 133 (447)
T ss_pred eeccCCCCCCCc---cccccCCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEec
Confidence 455555553222 2322345678888999999883 4567652 355666777644 2678999987
Q ss_pred ecc
Q 019303 87 KFG 89 (343)
Q Consensus 87 K~~ 89 (343)
-+.
T Consensus 134 GC~ 136 (447)
T KOG0259|consen 134 GCS 136 (447)
T ss_pred cch
Confidence 765
No 40
>PRK13796 GTPase YqeH; Provisional
Probab=69.11 E-value=1e+02 Score=29.20 Aligned_cols=120 Identities=15% Similarity=0.153 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHHcC---CCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHH
Q 019303 35 KPESDMIALIHHAINSG---ITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~G---i~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 111 (343)
.+.++..++++..-+.- +-.+|..+.-+. -...+.+.+. .+.-++|.+|.-... .....+.+.+-++
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s--~~~~L~~~~~--~kpviLViNK~DLl~------~~~~~~~i~~~l~ 123 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS--WIPGLHRFVG--NNPVLLVGNKADLLP------KSVKKNKVKNWLR 123 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCc--hhHHHHHHhC--CCCEEEEEEchhhCC------CccCHHHHHHHHH
Confidence 46667777777776655 556887665442 2333444432 456688999987532 1224556666666
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHH
Q 019303 112 ASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTI 165 (343)
Q Consensus 112 ~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 165 (343)
...+.+|....|++.+..-. ...++++++.+.+..+.+.+--+|.+|..-..|
T Consensus 124 ~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 124 QEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred HHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 66777786555777665433 456788889888887777888999999876554
No 41
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=68.11 E-value=1e+02 Score=28.96 Aligned_cols=150 Identities=9% Similarity=0.027 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHH
Q 019303 37 ESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKR 116 (343)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 116 (343)
.++..+.+..+.+.|++.|=.--....-..+.-.=+++++.-.+++.|..-.. ..++.+...+-+ +.|+.
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN---------~~~~~~~A~~~~-~~l~~ 211 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYN---------QSLTVPEAIERG-QALDQ 211 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCC---------CCcCHHHHHHHH-HHHHc
Confidence 35555666777788887653221111101222222455543334554443322 234555443322 33344
Q ss_pred cCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCcc-EEeCCCCcHHHHHHHhcCCCeeEEeeeccccccc-hhhcchH
Q 019303 117 LDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSRD-VEAEIVP 194 (343)
Q Consensus 117 L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~ 194 (343)
+ ++.++..|-.. +-++.+.++++..-|. ..|=+.++..++..+++...++++|+..+..-.- .-.++..
T Consensus 212 ~-----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~ 282 (355)
T cd03321 212 E-----GLTWIEEPTLQ----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASA 282 (355)
T ss_pred C-----CCCEEECCCCC----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHH
Confidence 4 45555555432 2467778888875543 5666778999999998887889998877654321 1247899
Q ss_pred HHHHcCCeEEe
Q 019303 195 TCRELGIGIVA 205 (343)
Q Consensus 195 ~~~~~gi~v~a 205 (343)
+|+.+|+.++.
T Consensus 283 ~A~~~gi~~~~ 293 (355)
T cd03321 283 LAEQAGIPMSS 293 (355)
T ss_pred HHHHcCCeecc
Confidence 99999999753
No 42
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=67.60 E-value=13 Score=32.32 Aligned_cols=66 Identities=23% Similarity=0.264 Sum_probs=43.6
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCC-CCcHHHHHHHhcCCCeeEEeeec
Q 019303 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEW 181 (343)
Q Consensus 114 L~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~ 181 (343)
+..+|.|++=+++...-....+.+ ..+.+.+.. .+.+..+||. |-+++.+.++.+...++++|++-
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~-~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg 85 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPE-QAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHG 85 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 346899999987433222223333 333333322 3568899986 67889999998888999999954
No 43
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=67.40 E-value=14 Score=32.39 Aligned_cols=125 Identities=15% Similarity=0.170 Sum_probs=70.7
Q ss_pred HHHHHHHcCCCcccEEEeecCC-CCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCCCeeEEeeeccccccch
Q 019303 110 CEASLKRLDIDCIDLYYQHRID-TRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDV 188 (343)
Q Consensus 110 ~~~sL~~L~~d~iDl~~lH~p~-~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~ 188 (343)
++..-+-+|+. ++..---. .+...++..++|..++-+|.+.-==.|.+...+++.+++...+.+ |.|+....
T Consensus 51 ~~~~Ae~~gi~---l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl~~----~~PLWg~d 123 (223)
T COG2102 51 AELQAEAMGIP---LVTFDTSGEEEREVEELKEALRRLKVDGIVAGAIASEYQKERVERLCEELGLKV----YAPLWGRD 123 (223)
T ss_pred HHHHHHhcCCc---eEEEecCccchhhHHHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHhCCEE----eecccCCC
Confidence 34444556644 33332222 223456677777777733332221235566677777777655443 45555554
Q ss_pred hhcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhhccccchhhhHHHHHHHHHHHHHHHHhCCCH
Q 019303 189 EAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCTP 262 (343)
Q Consensus 189 ~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~ 262 (343)
..+++...-+.|..++.-+.-+.|+-. ......+ + .+.++.+..++++||+.|
T Consensus 124 ~~ell~e~~~~Gf~~~Iv~Vsa~gL~~--~~lGr~i------------~-------~~~~e~l~~l~~~ygi~~ 176 (223)
T COG2102 124 PEELLEEMVEAGFEAIIVAVSAEGLDE--SWLGRRI------------D-------REFLEELKSLNRRYGIHP 176 (223)
T ss_pred HHHHHHHHHHcCCeEEEEEEeccCCCh--HHhCCcc------------C-------HHHHHHHHHHHHhcCCCc
Confidence 568888888888877776666666521 0111111 1 234568899999999876
No 44
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=65.65 E-value=1.3e+02 Score=28.88 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHH-cCCCeEeCcCCCCCCcH-HHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHH
Q 019303 36 PESDMIALIHHAIN-SGITLLDTSDIYGPHTN-EILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEAS 113 (343)
Q Consensus 36 ~~~~~~~~l~~A~~-~Gi~~~DTA~~Yg~g~s-E~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~s 113 (343)
+.++..+.++.+.+ .|++.|=.-..-..... .+.+ +++++.- .++.|..-.. ..++++... +.
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v-~avRea~-~~~~l~vDaN---------~~w~~~~A~----~~ 232 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAV-KALAEAF-PGARLRLDPN---------GAWSLETAI----RL 232 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHH-HHHHHhC-CCCcEEEeCC---------CCcCHHHHH----HH
Confidence 55656666667765 69998754321011011 1222 3333321 1333333222 234554433 33
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCcc-EEeCCCCcHHHHHHHhcCCCeeEEeeeccccccc-hhhc
Q 019303 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSRD-VEAE 191 (343)
Q Consensus 114 L~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~ 191 (343)
+++|. - ++.++-.|-+ .++.|.+|++...+. ..|-|.++.++++.+++...++++|...+..-.- .-.+
T Consensus 233 ~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~k 303 (395)
T cd03323 233 AKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVR 303 (395)
T ss_pred HHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHH
Confidence 34553 2 6666666543 478888898887765 6677778888999998888889998876654321 1248
Q ss_pred chHHHHHcCCeEEecccc
Q 019303 192 IVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 192 l~~~~~~~gi~v~a~spl 209 (343)
+...|+++||.+..++..
T Consensus 304 ia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 304 VAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHcCCeEEEecCc
Confidence 899999999999887754
No 45
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=65.40 E-value=1.2e+02 Score=28.20 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCC--CcHHHHHHHHhhcC-CCCCEEEEeecccccCCCCCCCCCCHHHHHHHHH
Q 019303 35 KPESDMIALIHHAINSGITLLDTSDIYGP--HTNEILLGKALKGG-MRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~--g~sE~~lG~al~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 111 (343)
.+.++..++++.+.+.|++.|.-...-.. -.-.+++- .+++. .-.++.|+|-... +.+ .-
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~-~i~~~~~~~~i~itTNG~l---------------l~~-~~ 111 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIA-ALAALPGIRDLALTTNGYL---------------LAR-RA 111 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHH-HHHhcCCCceEEEEcCchh---------------HHH-HH
Confidence 46788999999999999988765421000 01222222 23331 1234556555321 112 22
Q ss_pred HHHHHcCCCcccEEEeecCCC--------CCCHHHHHHHHHHHHHhCC----ccEEeCCCCcHHHHHHHhc---CCCeeE
Q 019303 112 ASLKRLDIDCIDLYYQHRIDT--------RVPIEVTIGELKKLVEEGK----IKYIGLSEASASTIRRAHA---VHPITA 176 (343)
Q Consensus 112 ~sL~~L~~d~iDl~~lH~p~~--------~~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~l~~~~~---~~~~~~ 176 (343)
+.|...|++.|- +-||..++ ...+++++++++.+++.|. |..+.+...+.+++.++.+ ..++.+
T Consensus 112 ~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v 190 (331)
T PRK00164 112 AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQL 190 (331)
T ss_pred HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeE
Confidence 345555665543 44454432 2357889999999999886 3344444445455544433 244555
Q ss_pred Eeeeccccccc---------hhhcchHHHHHcCCeEEe
Q 019303 177 VQLEWSLWSRD---------VEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 177 ~q~~~n~~~~~---------~~~~l~~~~~~~gi~v~a 205 (343)
.-++|.++... ...++++..+++|+.+..
T Consensus 191 ~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 191 RFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred EEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 55555554322 113577777777665443
No 46
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=64.53 E-value=46 Score=29.05 Aligned_cols=87 Identities=10% Similarity=0.032 Sum_probs=60.4
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHhCCcc-EEeCCCCcHHHHHHHhcCCCeeEEeeeccccccc-hhhcchHHHHHc
Q 019303 122 IDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTCREL 199 (343)
Q Consensus 122 iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~~~~ 199 (343)
.++.++-.|-+.. -++.+.+|++...+. ..+=|.++.+.+.+++....++++|+..+..-.- .-.++..+|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 4566666664432 356677788887765 4455667788887777777788998877664321 124788999999
Q ss_pred CCeEEeccccccc
Q 019303 200 GIGIVAYSPLGRG 212 (343)
Q Consensus 200 gi~v~a~spl~~G 212 (343)
|+.++..+.+..+
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999988776544
No 47
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=64.46 E-value=1.2e+02 Score=28.21 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCC--------------C----cHHHHHHHHhhcCCCCCEEEEeecccccCCCCC
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGP--------------H----TNEILLGKALKGGMRERVELATKFGISFADGKR 97 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~--------------g----~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~ 97 (343)
+.+.-.++.++|-+.|+-+|=|--.+.. + ....+|-...+ ..+.+.++|-..
T Consensus 88 p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGma-------- 157 (347)
T COG2089 88 PLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGMA-------- 157 (347)
T ss_pred CHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEcccc--------
Confidence 5566778889999999988866544431 0 01122222211 233566666543
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCC-CCCHHHH-HHHHHHHHHhCCccEEeCCCCcHHHHHH
Q 019303 98 EIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDT-RVPIEVT-IGELKKLVEEGKIKYIGLSEASASTIRR 167 (343)
Q Consensus 98 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~-~~~~~~~-~~~l~~l~~~G~ir~iGvSn~~~~~l~~ 167 (343)
+-+.+.++++...++=. .|+.+||+... ..+.+++ +.+|..|++.= ---||+|.|+..-+.-
T Consensus 158 ----~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~ 221 (347)
T COG2089 158 ----TIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAP 221 (347)
T ss_pred ----cHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHH
Confidence 45667777766555433 39999999753 3556553 66677776653 4579999998764433
No 48
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=64.46 E-value=74 Score=27.26 Aligned_cols=145 Identities=12% Similarity=0.003 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhc----CCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG----GMRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 111 (343)
|.+.+.++++.+++.|++..|.- +..+..+++. ..+++++++-= ....+.+++.+.
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~iG~~w~~gei~va~~------------~~a~~~~~~~l~ 69 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI--------EKGLMAGMGVVGKLFEDGELFLPHV------------MMSADAMLAGIK 69 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHcCCCccHHHH------------HHHHHHHHHHHH
Confidence 67889999999999998776543 2333344432 13445544211 123444555555
Q ss_pred HHHHHcCCC----cccEEEeecCCCCCCHHHHHHHHHHHHHhCC-ccEEeCCCCcHHHHHHHhcCCCeeEEeeecccccc
Q 019303 112 ASLKRLDID----CIDLYYQHRIDTRVPIEVTIGELKKLVEEGK-IKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSR 186 (343)
Q Consensus 112 ~sL~~L~~d----~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~ 186 (343)
.....+..+ .---+++-.+..+...-...-.-.-++..|. +.++|. +-+.+.+.+......++++.+..+....
T Consensus 70 ~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~~~ 148 (197)
T TIGR02370 70 VLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMTTT 148 (197)
T ss_pred HHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEccccccC
Confidence 555555421 1112333333322222222333334566776 777885 4466777777777778888777665443
Q ss_pred ch-hhcchHHHHHcCC
Q 019303 187 DV-EAEIVPTCRELGI 201 (343)
Q Consensus 187 ~~-~~~l~~~~~~~gi 201 (343)
.. -.++++.+++.|.
T Consensus 149 ~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 149 MYGQKDINDKLKEEGY 164 (197)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 21 2578888888864
No 49
>COG0218 Predicted GTPase [General function prediction only]
Probab=63.34 E-value=99 Score=26.69 Aligned_cols=100 Identities=11% Similarity=-0.051 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHH------cCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHH
Q 019303 38 SDMIALIHHAIN------SGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (343)
Q Consensus 38 ~~~~~~l~~A~~------~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 111 (343)
+.-.+++...++ ..+-.+|.-..--. .+..+=++|......=+++.||..-. ......+.+.
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~--~D~em~~~l~~~~i~~~vv~tK~DKi----------~~~~~~k~l~ 158 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKD--LDREMIEFLLELGIPVIVVLTKADKL----------KKSERNKQLN 158 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCcH--HHHHHHHHHHHcCCCeEEEEEccccC----------ChhHHHHHHH
Confidence 334555655554 35667886654432 56677788888777888999998743 5566778888
Q ss_pred HHHHHcCCCcccE--EEeecCCCCCCHHHHHHHHHHHHHh
Q 019303 112 ASLKRLDIDCIDL--YYQHRIDTRVPIEVTIGELKKLVEE 149 (343)
Q Consensus 112 ~sL~~L~~d~iDl--~~lH~p~~~~~~~~~~~~l~~l~~~ 149 (343)
...++|+.+..|- +++........++++++.+.+...+
T Consensus 159 ~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 159 KVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 9999998877775 5555555556688888888776553
No 50
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=63.23 E-value=47 Score=31.97 Aligned_cols=59 Identities=17% Similarity=0.034 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeec-CCCC------------CCHHH---HH-HHHHHHHHhCCccEEeCCCCc
Q 019303 101 GDPAYVRAACEASLKRLDIDCIDLYYQHR-IDTR------------VPIEV---TI-GELKKLVEEGKIKYIGLSEAS 161 (343)
Q Consensus 101 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~-p~~~------------~~~~~---~~-~~l~~l~~~G~ir~iGvSn~~ 161 (343)
-+.+.+++.++..+ +|+.++|.+|.+.- |... .+.++ .+ .+.+.|.+.|.. ++++|||.
T Consensus 179 qt~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa 254 (400)
T PRK07379 179 QTLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYA 254 (400)
T ss_pred CCHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheE
Confidence 46777777666554 48888888887752 2110 01111 22 355567777764 67888886
No 51
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=62.97 E-value=88 Score=28.71 Aligned_cols=95 Identities=16% Similarity=0.220 Sum_probs=66.2
Q ss_pred HHHHHcCCCcccEEEeecCCC-----CCCHHHHHHHHHHHHHhCCcc-EEeCCCC---cHHHHHHHhcCCCee-EEeeec
Q 019303 112 ASLKRLDIDCIDLYYQHRIDT-----RVPIEVTIGELKKLVEEGKIK-YIGLSEA---SASTIRRAHAVHPIT-AVQLEW 181 (343)
Q Consensus 112 ~sL~~L~~d~iDl~~lH~p~~-----~~~~~~~~~~l~~l~~~G~ir-~iGvSn~---~~~~l~~~~~~~~~~-~~q~~~ 181 (343)
+..++.| .|++.+|-.+. +.+.+|+.+.|+++.+.=++- -||=|.. +++.++++.+...=. |.-...
T Consensus 158 k~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSa 234 (403)
T COG2069 158 KCVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASA 234 (403)
T ss_pred HHHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecc
Confidence 3446677 68888886643 367789999999999998875 4677764 577888887763222 222222
Q ss_pred cccccchhhcchHHHHHcCCeEEecccccc
Q 019303 182 SLWSRDVEAEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 182 n~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 211 (343)
|+ +.. -+.+.+.+.++|=.|++|+++.-
T Consensus 235 nl-dlD-y~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 235 NL-DLD-YERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred cc-ccC-HHHHHHHHHhcCceEEEeeccCh
Confidence 32 222 25789999999999999998853
No 52
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=62.55 E-value=54 Score=31.17 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeec-CCCC-----------CCHH----HH-HHHHHHHHHhCCccEEeCCCCcH
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHR-IDTR-----------VPIE----VT-IGELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~-p~~~-----------~~~~----~~-~~~l~~l~~~G~ir~iGvSn~~~ 162 (343)
.-+.+.+++.++..+ .|+.++|.+|.+.- |... .+.+ +. ..+.+.|.+.|. .++++|||.-
T Consensus 166 gqt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 166 TQSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CCCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 447888888887766 48999999988762 2210 0111 12 234455666776 5578888763
No 53
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=62.52 E-value=2.9 Score=39.16 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=35.5
Q ss_pred hCCccEEeCCCCcHHHHHHHhcCCC-eeEEeeeccccccchhhcchHHHHHcCCe
Q 019303 149 EGKIKYIGLSEASASTIRRAHAVHP-ITAVQLEWSLWSRDVEAEIVPTCRELGIG 202 (343)
Q Consensus 149 ~G~ir~iGvSn~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 202 (343)
-|+||++||--++++++.++..... -+..+.+..++.-..+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 4999999999999999988876522 22223333333322345677777777775
No 54
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=61.43 E-value=1.3e+02 Score=27.47 Aligned_cols=153 Identities=13% Similarity=0.131 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHcC-CCeEeC-------cC-CCCCCcHHHHHHHHhhcCCC-CCEEEEeecccccCCCCCCCCCCHHH
Q 019303 36 PESDMIALIHHAINSG-ITLLDT-------SD-IYGPHTNEILLGKALKGGMR-ERVELATKFGISFADGKREIRGDPAY 105 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~G-i~~~DT-------A~-~Yg~g~sE~~lG~al~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~ 105 (343)
+.++..+..+.+.+.| +..||- +. .|..+.+.+.+-+.++...+ -++-|..|+.+. .+.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~-----------~~~ 170 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN-----------VTD 170 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC-----------chh
Confidence 5677778888888888 999976 21 12223355666666655211 267788898743 122
Q ss_pred HHHHHHHHHHHcCCCcccEEE-eecC--CCCC--C--------------HHHHHHHHHHHHHhCCccEEeCCCC-cHHHH
Q 019303 106 VRAACEASLKRLDIDCIDLYY-QHRI--DTRV--P--------------IEVTIGELKKLVEEGKIKYIGLSEA-SASTI 165 (343)
Q Consensus 106 i~~~~~~sL~~L~~d~iDl~~-lH~p--~~~~--~--------------~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l 165 (343)
+ ..+-+.|+..|.|.|++.- ++.. +... + ..-.++.+.++++.=.+--||+... +++.+
T Consensus 171 ~-~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da 249 (301)
T PRK07259 171 I-VEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDA 249 (301)
T ss_pred H-HHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 3 2344567788987776531 1111 0000 0 0114666677777656888888884 78888
Q ss_pred HHHhcCCCeeEEeeeccccc-c----chhhcchHHHHHcCC
Q 019303 166 RRAHAVHPITAVQLEWSLWS-R----DVEAEIVPTCRELGI 201 (343)
Q Consensus 166 ~~~~~~~~~~~~q~~~n~~~-~----~~~~~l~~~~~~~gi 201 (343)
.+++... .+.+|+-=-++. + ...+++-.++.++|.
T Consensus 250 ~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 250 IEFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 8877644 577776333322 1 112455566666664
No 55
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=61.25 E-value=61 Score=28.74 Aligned_cols=112 Identities=16% Similarity=0.010 Sum_probs=61.8
Q ss_pred CcceeccccCCcCCCCCCCHHHHHHHHHHHHH-cCCCeEeCcCCCCC--C-cHHHHHHHHhhcCCCCCEEEEeecccccC
Q 019303 18 SAQGLGCMGMSAFYGPPKPESDMIALIHHAIN-SGITLLDTSDIYGP--H-TNEILLGKALKGGMRERVELATKFGISFA 93 (343)
Q Consensus 18 s~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~-~Gi~~~DTA~~Yg~--g-~sE~~lG~al~~~~R~~~~i~tK~~~~~~ 93 (343)
|+|.+||..+. +. +++..|++ .|-..+=.|----+ + ..+.. .+.-.+++++.+.--..
T Consensus 9 SRL~lGTgky~-------s~----~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~---~~~~i~~~~~~lLPNTa---- 70 (247)
T PF05690_consen 9 SRLILGTGKYP-------SP----EVMREAIEASGAEVVTVALRRVNLGSKPGGDN---ILDYIDRSGYTLLPNTA---- 70 (247)
T ss_dssp -SEEEE-STSS-------SH----HHHHHHHHHTT-SEEEEECCGSTTTS-TTCHH---CCCCTTCCTSEEEEE-T----
T ss_pred cceEEecCCCC-------CH----HHHHHHHHHhCCcEEEEEEecccCCCCCCCcc---HHHHhcccCCEECCcCC----
Confidence 89999998762 33 45566654 47666655531110 0 01111 22223556665443322
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCHHHHHHHHHHHHHhCCc
Q 019303 94 DGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR-VPIEVTIGELKKLVEEGKI 152 (343)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~-~~~~~~~~~l~~l~~~G~i 152 (343)
-..+.+...+..+-..+-++++.|=|=.+..+..- -+..|++++-+.|+++|-+
T Consensus 71 -----Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~ 125 (247)
T PF05690_consen 71 -----GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV 125 (247)
T ss_dssp -----T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-E
T ss_pred -----CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCE
Confidence 13477778888888889999998887666555432 3467899999999999863
No 56
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=60.72 E-value=1.5e+02 Score=27.96 Aligned_cols=147 Identities=10% Similarity=0.043 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 115 (343)
+.++..+.+..+.+.|++.|=.-- .+.+ +++++.-.+++.|..-.. ..++.+... +-++
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv-------~~~v-~avre~~G~~~~l~vDaN---------~~w~~~~A~----~~~~ 184 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL-------PKLF-EAVREKFGFEFHLLHDVH---------HRLTPNQAA----RFGK 184 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH-------HHHH-HHHHhccCCCceEEEECC---------CCCCHHHHH----HHHH
Confidence 445566677777889999874311 2222 344442223444432221 234554432 2233
Q ss_pred HcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCcc-EEeCCCCcHHHHHHHhcCCCeeEEeeeccccccc-hhhcch
Q 019303 116 RLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSRD-VEAEIV 193 (343)
Q Consensus 116 ~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~ 193 (343)
.|. .+++.++-.|-+. +-++.+.+|++...+. ..|=|-++...++.++....++++|+.....-.- .-.++.
T Consensus 185 ~l~--~~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia 258 (361)
T cd03322 185 DVE--PYRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIA 258 (361)
T ss_pred Hhh--hcCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHH
Confidence 332 2466666666432 2377788898887775 6778888999999998888889999877654321 124789
Q ss_pred HHHHHcCCeEEecccc
Q 019303 194 PTCRELGIGIVAYSPL 209 (343)
Q Consensus 194 ~~~~~~gi~v~a~spl 209 (343)
+.|+++|+.++.++..
T Consensus 259 ~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 259 DLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHHHcCCeeeccCCC
Confidence 9999999999876443
No 57
>PRK05660 HemN family oxidoreductase; Provisional
Probab=60.67 E-value=61 Score=30.90 Aligned_cols=61 Identities=10% Similarity=0.011 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee-cCCCC-------C-CHHHHH---H-HHHHHHHhCCccEEeCCCCcH
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQH-RIDTR-------V-PIEVTI---G-ELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH-~p~~~-------~-~~~~~~---~-~l~~l~~~G~ir~iGvSn~~~ 162 (343)
..+.+.+.+.++..++ |+.|+|.+|.+- .|+.. . +.++.+ + +.+.|.+.|. ..+++|||.-
T Consensus 170 gqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 243 (378)
T PRK05660 170 DQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAK 243 (378)
T ss_pred CCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccC
Confidence 3477788777777554 899999988764 22210 1 112222 2 3344566675 5578888853
No 58
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=59.60 E-value=1.6e+02 Score=27.79 Aligned_cols=153 Identities=10% Similarity=0.067 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcC-CCeEeCcCC-CCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHH
Q 019303 38 SDMIALIHHAINSG-ITLLDTSDI-YGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (343)
Q Consensus 38 ~~~~~~l~~A~~~G-i~~~DTA~~-Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 115 (343)
++..+.+..+++.| ++.|=.--. -......+.+ +++++.-.+++-|.-=.. ..++.+...+ +-+.|+
T Consensus 144 ~~~~~~~~~~~~~G~f~~~KiKvg~~~~~~d~~~v-~avr~~~g~~~~l~iDaN---------~~~~~~~A~~-~~~~l~ 212 (365)
T cd03318 144 ERDIAEAEEMLEAGRHRRFKLKMGARPPADDLAHV-EAIAKALGDRASVRVDVN---------QAWDESTAIR-ALPRLE 212 (365)
T ss_pred HHHHHHHHHHHhCCCceEEEEEeCCCChHHHHHHH-HHHHHHcCCCcEEEEECC---------CCCCHHHHHH-HHHHHH
Confidence 44445566778889 888754211 0110122333 344442223333322111 2345544322 223444
Q ss_pred HcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCcc-EEeCCCCcHHHHHHHhcCCCeeEEeeecccccc-chhhcch
Q 019303 116 RLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIV 193 (343)
Q Consensus 116 ~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~ 193 (343)
.+ ++.++-.|-+. +.++.+.+|+++..|. ..|=|-++..++..+++...++++|+.....-. ..-..+.
T Consensus 213 ~~-----~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~ 283 (365)
T cd03318 213 AA-----GVELIEQPVPR----ENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVA 283 (365)
T ss_pred hc-----CcceeeCCCCc----ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHH
Confidence 44 44455555332 2467788888887665 667777889999998887778888887665432 1124788
Q ss_pred HHHHHcCCeEEeccccc
Q 019303 194 PTCRELGIGIVAYSPLG 210 (343)
Q Consensus 194 ~~~~~~gi~v~a~spl~ 210 (343)
.+|+++|+.++..+-..
T Consensus 284 ~~a~~~gi~~~~~~~~~ 300 (365)
T cd03318 284 AIAEAAGIALYGGTMLE 300 (365)
T ss_pred HHHHHcCCceeecCcch
Confidence 99999999988654443
No 59
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=59.55 E-value=1.3e+02 Score=28.76 Aligned_cols=106 Identities=17% Similarity=0.188 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHH-----------HHcCCCcccEEEeecCCCC-----CCHHHHHHHHHHHHHhCCccE-EeCC---CCcH
Q 019303 103 PAYVRAACEASL-----------KRLDIDCIDLYYQHRIDTR-----VPIEVTIGELKKLVEEGKIKY-IGLS---EASA 162 (343)
Q Consensus 103 ~~~i~~~~~~sL-----------~~L~~d~iDl~~lH~p~~~-----~~~~~~~~~l~~l~~~G~ir~-iGvS---n~~~ 162 (343)
++.+++.+++.. +.++ +|++.||.-..+ .+.++..+..++..+.=.+-- |+=| ..++
T Consensus 127 ~~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~ 203 (389)
T TIGR00381 127 PKPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDP 203 (389)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCH
Confidence 366777776655 5565 788888875332 345577777777655444332 2222 4578
Q ss_pred HHHHHHhcCCCe-eEEeeeccccccchhhcchHHHHHcCCeEEecccccccc
Q 019303 163 STIRRAHAVHPI-TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGF 213 (343)
Q Consensus 163 ~~l~~~~~~~~~-~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 213 (343)
+.++.+++...= -++-..-|.-. .-+.+.+.|+++|..+++++|..-+.
T Consensus 204 eVLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 204 LVLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred HHHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcHHH
Confidence 888887765211 11111112110 13589999999999999999886553
No 60
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=59.42 E-value=43 Score=29.12 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=52.1
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCC-ccEEeCC-CCcHHHHHHHhcCCCeeEEeeeccccccchhhc
Q 019303 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGK-IKYIGLS-EASASTIRRAHAVHPITAVQLEWSLWSRDVEAE 191 (343)
Q Consensus 114 L~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~-ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~ 191 (343)
...+|.||+=+++.-.-....+. +...++.+.-. +..+||. |.+.+.+.++.+...++.+|++-. ...+
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs~----~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~-----e~~~ 88 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVSP----EQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGD-----EDPE 88 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCCH----HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCC-----CCHH
Confidence 35689999887655421122333 33334444433 8899986 578889999999999999998533 1335
Q ss_pred chHHHHHcC-CeEE
Q 019303 192 IVPTCRELG-IGIV 204 (343)
Q Consensus 192 l~~~~~~~g-i~v~ 204 (343)
.++..++.. +.|+
T Consensus 89 ~~~~l~~~~~~~v~ 102 (208)
T COG0135 89 YIDQLKEELGVPVI 102 (208)
T ss_pred HHHHHHhhcCCceE
Confidence 666666553 5554
No 61
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=59.42 E-value=91 Score=27.27 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc-CCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHH
Q 019303 35 KPESDMIALIHHAINSGITLLDTS-DIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEAS 113 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA-~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~s 113 (343)
.+.++..++++...+.||..|++. +..+. ...+.+.+..+..+...+ .+-+. ...+.++..++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~--~~~~~-----------~~~~~i~~~~~~~ 76 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARL--QALCR-----------ANEEDIERAVEAA 76 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEE--EEEEE-----------SCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhccccc--ceeee-----------ehHHHHHHHHHhh
Confidence 367888899999899999999999 44332 122334443333233222 22221 2355566656533
Q ss_pred HHHcCCCcccEEEeecCC-----CCCC----HHHHHHHHHHHHHhCCccEEeCCC---CcHHHHHHHhcC---CCeeEEe
Q 019303 114 LKRLDIDCIDLYYQHRID-----TRVP----IEVTIGELKKLVEEGKIKYIGLSE---ASASTIRRAHAV---HPITAVQ 178 (343)
Q Consensus 114 L~~L~~d~iDl~~lH~p~-----~~~~----~~~~~~~l~~l~~~G~ir~iGvSn---~~~~~l~~~~~~---~~~~~~q 178 (343)
...|.|.+.++.-=++. .... .+.+.+.++.+++.|....+++-. ++++.+.++.+. ..++.+.
T Consensus 77 -~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 155 (237)
T PF00682_consen 77 -KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIY 155 (237)
T ss_dssp -HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEE
T ss_pred -HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEE
Confidence 56787777765322220 0111 345566677778888888888754 455554443322 2345444
Q ss_pred eeccccccchh--hcchHHHHHc----CCeEEecccccc
Q 019303 179 LEWSLWSRDVE--AEIVPTCREL----GIGIVAYSPLGR 211 (343)
Q Consensus 179 ~~~n~~~~~~~--~~l~~~~~~~----gi~v~a~spl~~ 211 (343)
+.=+.-...+. .+++...+++ .|++..+.-++.
T Consensus 156 l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gl 194 (237)
T PF00682_consen 156 LADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGL 194 (237)
T ss_dssp EEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-
T ss_pred eeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccc
Confidence 43333222222 3555555543 355555555543
No 62
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=59.39 E-value=78 Score=28.25 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=52.9
Q ss_pred HHHHHHHcCCCcccEEEeecCCCCCCHH-HHHHHHHHHHHhCCccEEeCCC-CcHHHHHHHhcCCCeeEEeeeccccccc
Q 019303 110 CEASLKRLDIDCIDLYYQHRIDTRVPIE-VTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQLEWSLWSRD 187 (343)
Q Consensus 110 ~~~sL~~L~~d~iDl~~lH~p~~~~~~~-~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~~~q~~~n~~~~~ 187 (343)
+-+-|+.+| +|.+.+|..+...... --++.+.++++.-.+.-|.... .+++++.++......+.+.+---+....
T Consensus 160 ~~~~l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~ 236 (254)
T TIGR00735 160 WAKEVEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYRE 236 (254)
T ss_pred HHHHHHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCC
Confidence 444456677 5666667654422111 1255566666665666665554 4678888888776566654422222221
Q ss_pred -hhhcchHHHHHcCCeE
Q 019303 188 -VEAEIVPTCRELGIGI 203 (343)
Q Consensus 188 -~~~~l~~~~~~~gi~v 203 (343)
...++..+|+++||.+
T Consensus 237 ~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 237 ITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCHHHHHHHHHHCCCcc
Confidence 1357889999999874
No 63
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=59.27 E-value=1.5e+02 Score=27.57 Aligned_cols=95 Identities=16% Similarity=0.192 Sum_probs=53.5
Q ss_pred HHHHHcCCCcccEEEeec-CCC-CCCHHHHHHHHHHHHHhCCccE-EeCCCC---cHHHHHHHhcCCC-eeEEeeecccc
Q 019303 112 ASLKRLDIDCIDLYYQHR-IDT-RVPIEVTIGELKKLVEEGKIKY-IGLSEA---SASTIRRAHAVHP-ITAVQLEWSLW 184 (343)
Q Consensus 112 ~sL~~L~~d~iDl~~lH~-p~~-~~~~~~~~~~l~~l~~~G~ir~-iGvSn~---~~~~l~~~~~~~~-~~~~q~~~n~~ 184 (343)
+.-+.+|.|+||+-+.-. |+. +...++....++...+.=.+-- |..|.. +++.++++++... -..+-...+
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat-- 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE-- 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC--
Confidence 344688988888754322 322 2234445555555444433333 665532 6788888776522 011111111
Q ss_pred ccchhhcchHHHHHcCCeEEecccc
Q 019303 185 SRDVEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 185 ~~~~~~~l~~~~~~~gi~v~a~spl 209 (343)
...-+.+.+.|+++|..|++.+|.
T Consensus 161 -~en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 161 -EDNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred -HHHHHHHHHHHHHhCCeEEEEcHH
Confidence 111358999999999999998755
No 64
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=58.07 E-value=1.6e+02 Score=27.52 Aligned_cols=149 Identities=18% Similarity=0.126 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHc
Q 019303 38 SDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRL 117 (343)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 117 (343)
++..+.+..+.+.|++.|=.-- +.....+.+ +++++.-. ++-|.-=.. ..++.+... + +++|
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~~g-~~~l~lDaN---------~~~~~~~a~--~---~~~l 200 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRERFP-DIPLMADAN---------SAYTLADIP--L---LKRL 200 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHHCC-CCeEEEECC---------CCCCHHHHH--H---HHHh
Confidence 5566777888899998873321 221223333 44443211 332222111 234554432 2 3444
Q ss_pred CCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCc-cEEeCCCCcHHHHHHHhcCCCeeEEeeecccccc-chhhcchHH
Q 019303 118 DIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPT 195 (343)
Q Consensus 118 ~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~i-r~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~ 195 (343)
. ..++.++-.|-+. +-+..+.++++.-.+ -..|=|-++.+.+..+++...++++|+..+..-. ..-..+...
T Consensus 201 ~--~~~i~~iEeP~~~----~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~ 274 (354)
T cd03317 201 D--EYGLLMIEQPLAA----DDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDL 274 (354)
T ss_pred h--cCCccEEECCCCh----hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHH
Confidence 2 2456666655432 236677777776443 3567788999999999988888899987665432 112478999
Q ss_pred HHHcCCeEEeccccc
Q 019303 196 CRELGIGIVAYSPLG 210 (343)
Q Consensus 196 ~~~~gi~v~a~spl~ 210 (343)
|+.+|+.++..+...
T Consensus 275 A~~~gi~~~~g~~~e 289 (354)
T cd03317 275 CQEHGIPVWCGGMLE 289 (354)
T ss_pred HHHcCCcEEecCccc
Confidence 999999987655443
No 65
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=57.02 E-value=1.7e+02 Score=27.23 Aligned_cols=153 Identities=17% Similarity=0.115 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 115 (343)
+.++..+.+..+.+.|++.|=.-- +. ..+.-+=+++++.- .++-|.-=.. ..++.+.++ . ++
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~-~~~~l~vDaN---------~~~~~~~a~--~---~~ 193 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRF-PQIPLVIDAN---------ESYDLQDFP--R---LK 193 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhC-CCCcEEEECC---------CCCCHHHHH--H---HH
Confidence 446666777888899999873321 11 12222224444422 2222221111 234555431 1 33
Q ss_pred HcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCcc-EEeCCCCcHHHHHHHhcCCCeeEEeeeccccccc-hhhcch
Q 019303 116 RLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSRD-VEAEIV 193 (343)
Q Consensus 116 ~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~ 193 (343)
+|. ..++.++-.|-+ .+.++.+.++++...+. ..|=|.++...+..+++...++++|+..+..-.- .-..+.
T Consensus 194 ~l~--~~~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~ 267 (324)
T TIGR01928 194 ELD--RYQLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAI 267 (324)
T ss_pred HHh--hCCCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHH
Confidence 432 235555555543 23467788888886665 6678889999999999888889999876654321 124789
Q ss_pred HHHHHcCCeEEeccccccc
Q 019303 194 PTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 194 ~~~~~~gi~v~a~spl~~G 212 (343)
..|+++||.++..+.+..|
T Consensus 268 ~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 268 ETCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHHcCCeEEEcceEccc
Confidence 9999999999877655544
No 66
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=56.85 E-value=66 Score=31.11 Aligned_cols=86 Identities=12% Similarity=-0.019 Sum_probs=61.9
Q ss_pred cEEEeecCCCCCCHHHHHHHHHHHHHh------CCccEEeCCCCcHHHHHHHhcCCCeeEEeeeccccccc-hhhcchHH
Q 019303 123 DLYYQHRIDTRVPIEVTIGELKKLVEE------GKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPT 195 (343)
Q Consensus 123 Dl~~lH~p~~~~~~~~~~~~l~~l~~~------G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~ 195 (343)
++ ++-.|-+..+.++.++.|.+|+++ ..=-..+=|.++.+.+.++++..-.+++|+..+-.-.- .-.++.++
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 44 677776544445568888888876 22234566778899999998888889999877754321 12589999
Q ss_pred HHHcCCeEEecccc
Q 019303 196 CRELGIGIVAYSPL 209 (343)
Q Consensus 196 ~~~~gi~v~a~spl 209 (343)
|+++||.++..+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999987665
No 67
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=55.40 E-value=1.4e+02 Score=27.97 Aligned_cols=61 Identities=16% Similarity=0.100 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeec-CCCC--------CCHHHHHH-HHHHHHHhCCccEEeCCCCcH
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHR-IDTR--------VPIEVTIG-ELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~-p~~~--------~~~~~~~~-~l~~l~~~G~ir~iGvSn~~~ 162 (343)
.-+.+.+++.++..+ +|+.++|.+|.+.- |... .+.++.+. +.+.|.+.|. ..+++|||.-
T Consensus 161 gqt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 161 LDNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 346777777776644 58899988887653 2110 11223333 4555666675 5788888863
No 68
>PRK05414 urocanate hydratase; Provisional
Probab=55.21 E-value=34 Score=33.71 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=83.9
Q ss_pred CCceeCcceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeE--eCcCCCC--------CCcHHHHHHHHhhc---CCC
Q 019303 13 QGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLL--DTSDIYG--------PHTNEILLGKALKG---GMR 79 (343)
Q Consensus 13 tg~~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~--DTA~~Yg--------~g~sE~~lG~al~~---~~R 79 (343)
|-..-|++.+-...+-+.|. +.+.. ...-+.|+..+ -||..|. .|--|.++..+-+. ..+
T Consensus 94 th~~APRVliaN~~lVp~wa---~~e~f----~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~ 166 (556)
T PRK05414 94 THPDAPRVLIANSNLVPHWA---NWEHF----NELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLA 166 (556)
T ss_pred CCCCCCeEEEEcCccccCCC---CHHHH----HHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCc
Confidence 33344555544433322232 33433 44456676644 3554442 24455554444332 157
Q ss_pred CCEEEEeecccccCCCC----------CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHh
Q 019303 80 ERVELATKFGISFADGK----------REIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE 149 (343)
Q Consensus 80 ~~~~i~tK~~~~~~~~~----------~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~ 149 (343)
.++||++-+|......+ .....++. +.-+|+.+.|+|.+ ..+++++++..++.+++
T Consensus 167 G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~-------ri~kR~~~gyld~~-------~~~Ldeal~~~~~a~~~ 232 (556)
T PRK05414 167 GRLVLTAGLGGMGGAQPLAATMAGAVCLAVEVDES-------RIDKRLRTGYLDEK-------ADDLDEALALAEEAKAA 232 (556)
T ss_pred eeEEEEecCCccccccHHHHHhcCceEEEEEECHH-------HHHHHHhCCcceeE-------cCCHHHHHHHHHHHHHc
Confidence 78999988875422100 00122333 33478889999965 35689999999999999
Q ss_pred CCccEEeCCCCcHHHHHHHhcC
Q 019303 150 GKIKYIGLSEASASTIRRAHAV 171 (343)
Q Consensus 150 G~ir~iGvSn~~~~~l~~~~~~ 171 (343)
|+..+||+-..-++.++++.+.
T Consensus 233 ~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 233 GEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred CCceEEEEeccHHHHHHHHHHc
Confidence 9999999998888888888765
No 69
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=54.70 E-value=34 Score=33.55 Aligned_cols=148 Identities=14% Similarity=0.094 Sum_probs=87.6
Q ss_pred CCceeCcceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeE--eCcCCCC--------CCcHHHHHHHHhhc---CCC
Q 019303 13 QGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLL--DTSDIYG--------PHTNEILLGKALKG---GMR 79 (343)
Q Consensus 13 tg~~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~--DTA~~Yg--------~g~sE~~lG~al~~---~~R 79 (343)
|-..-|++.+-...+-+.|. +.+.. +..-+.|+..+ -||..|. .|--|.++..+-+. ..+
T Consensus 85 th~~APRVliaNs~lVp~wa---~~e~f----~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~ 157 (545)
T TIGR01228 85 THENAPRVLIANSNLVPHWA---DWEHF----HELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLK 157 (545)
T ss_pred CCCCCCeEEEEcCccccCCC---CHHHH----HHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCc
Confidence 33444555554433322232 33443 44456677654 3554442 14455554433332 156
Q ss_pred CCEEEEeecccccCCCC----------CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHh
Q 019303 80 ERVELATKFGISFADGK----------REIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE 149 (343)
Q Consensus 80 ~~~~i~tK~~~~~~~~~----------~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~ 149 (343)
.++||++-+|......+ .....++. +.-+|+.+.|+|.+ ..+++++++..++.+++
T Consensus 158 G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~-------ri~kR~~~gyld~~-------~~~ldeal~~~~~a~~~ 223 (545)
T TIGR01228 158 GKWVLTAGLGGMGGAQPLAVTMNGGVSIAVEVDES-------RIDKRLETKYCDEQ-------TDSLDEALARAEEAKAE 223 (545)
T ss_pred eeEEEEeCCCccccccHHHHHHcCceEEEEEECHH-------HHHHHHhcCcceeE-------cCCHHHHHHHHHHHHHc
Confidence 78888888875421100 00122333 33478889999964 35689999999999999
Q ss_pred CCccEEeCCCCcHHHHHHHhcC---CCeeEEeeec
Q 019303 150 GKIKYIGLSEASASTIRRAHAV---HPITAVQLEW 181 (343)
Q Consensus 150 G~ir~iGvSn~~~~~l~~~~~~---~~~~~~q~~~ 181 (343)
|+..+||+-..-++.++++.+. +.+.+-|...
T Consensus 224 ~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSa 258 (545)
T TIGR01228 224 GKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSA 258 (545)
T ss_pred CCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcc
Confidence 9999999999888888888775 2333445543
No 70
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=54.50 E-value=77 Score=25.61 Aligned_cols=63 Identities=6% Similarity=0.177 Sum_probs=45.8
Q ss_pred CCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcC--CCcccEEEeecCCCCCCHHHHHHHHHHHHHh
Q 019303 78 MRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLD--IDCIDLYYQHRIDTRVPIEVTIGELKKLVEE 149 (343)
Q Consensus 78 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~ 149 (343)
+|=-+.|+-|++.- ..+..|++.+.++.+.+. ....|++++.......++.++.+.|..+.++
T Consensus 46 ~RlG~sVSKKvg~A---------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGKA---------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEecccccc---------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 34456777777642 356778888888887763 3568999999987767788887777777665
No 71
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=53.95 E-value=61 Score=31.75 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeec
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHR 129 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~ 129 (343)
.-+.+.+++.++..+ .|+.++|++|.+.-
T Consensus 226 gqT~e~~~~~l~~~~-~l~~~~is~y~L~~ 254 (449)
T PRK09058 226 GQTPEIWQQDLAIVR-DLGLDGVDLYALNL 254 (449)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEecccc
Confidence 347777877777665 48999999998763
No 72
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=53.61 E-value=1.3e+02 Score=27.04 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=40.6
Q ss_pred HHHHHHhCCccEEeC--CCCcHHHHHHHhcC--CCeeEEeeeccccccchhhcchHHHHHcCCeEEeccccc
Q 019303 143 LKKLVEEGKIKYIGL--SEASASTIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLG 210 (343)
Q Consensus 143 l~~l~~~G~ir~iGv--Sn~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~ 210 (343)
|.+-.++|+. -+|+ +.-++.. .+++.. ..+.++=.++++++...-..++..|+..|+..+..-|-.
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~-~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPIT-TEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHH-HHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 4455556774 3443 2333433 333333 445555668888877555678888999999888876554
No 73
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=53.60 E-value=1.7e+02 Score=26.69 Aligned_cols=104 Identities=12% Similarity=0.053 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCCCeeEEee
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~ 179 (343)
.++.+.. ..+-+.|.++|+++|.+-..+.|...-...+.++.+..+.+...++...+. .....++.+.+. .++.+.+
T Consensus 22 ~~s~e~k-~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~-g~~~v~i 98 (287)
T PRK05692 22 FIPTADK-IALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA-GADEVAV 98 (287)
T ss_pred CcCHHHH-HHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc-CCCEEEE
Confidence 4455554 447777999999999987555553211112234555555444445555554 467778887765 2233333
Q ss_pred ecccc--------ccch------hhcchHHHHHcCCeEEec
Q 019303 180 EWSLW--------SRDV------EAEIVPTCRELGIGIVAY 206 (343)
Q Consensus 180 ~~n~~--------~~~~------~~~l~~~~~~~gi~v~a~ 206 (343)
-++.- .+.. -.+.+++++++|+.+.++
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~ 139 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGY 139 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 32221 1111 136889999999988643
No 74
>PRK06424 transcription factor; Provisional
Probab=52.48 E-value=52 Score=26.78 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=40.3
Q ss_pred hcchHHHHHcCCeEEec---ccccc--ccCCCCCCC-CCCCCchhhhhhccccchhhhHHHHHHHHHHHHHHHHhCCCHH
Q 019303 190 AEIVPTCRELGIGIVAY---SPLGR--GFFSSGPKL-VESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCTPS 263 (343)
Q Consensus 190 ~~l~~~~~~~gi~v~a~---spl~~--G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~a 263 (343)
-.+-+-|.+.|..|..+ +|... -..+..... .........+.. ..+.....+.....-+.|+.+-++.|+|..
T Consensus 23 l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ~ 101 (144)
T PRK06424 23 LNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKKYK-KKASDEDLDIVEDYAELVKNARERLSMSQA 101 (144)
T ss_pred eehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCCcc-CcccHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 46778899999999998 55543 111101000 000000000000 011111122223345567777788899999
Q ss_pred HHHHHHHHh
Q 019303 264 QLALAWVHH 272 (343)
Q Consensus 264 qlal~w~l~ 272 (343)
++|-+--.+
T Consensus 102 eLA~~iGvs 110 (144)
T PRK06424 102 DLAAKIFER 110 (144)
T ss_pred HHHHHhCCC
Confidence 988665443
No 75
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=51.13 E-value=1.8e+02 Score=25.99 Aligned_cols=105 Identities=12% Similarity=-0.006 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCCCeeEEeee
Q 019303 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLE 180 (343)
Q Consensus 101 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~ 180 (343)
.+++.+.+..++.++ -|-|+||+=. .|......++.-+.+..+++.-. .-|-+-+++++.++.+++...=..+-+.
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~iINs 98 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKCVVNS 98 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCcEEEe
Confidence 466777777777765 5999999854 23321222333333333332212 2377888999999999876211222233
Q ss_pred cccccc-chhhcchHHHHHcCCeEEecccc
Q 019303 181 WSLWSR-DVEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 181 ~n~~~~-~~~~~l~~~~~~~gi~v~a~spl 209 (343)
.+.... .....+++.++++|..++.+..-
T Consensus 99 Is~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 99 INLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred CCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 443321 11346889999999998886543
No 76
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=51.12 E-value=69 Score=31.39 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEe-ecCCC----------CC-CHHH----HHHHHHHHHHhCCccEEeCCCCcH
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQ-HRIDT----------RV-PIEV----TIGELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~l-H~p~~----------~~-~~~~----~~~~l~~l~~~G~ir~iGvSn~~~ 162 (343)
.-+.+.+.+.++..+ +|+.++|.+|.+ |.|.. .. +.++ ...+.+.|.+.|. ..+|+++|.-
T Consensus 215 gqt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~far 291 (453)
T PRK13347 215 HQTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY-VPIGLDHFAL 291 (453)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 347788877777665 689999998866 33321 01 1222 2235566777887 5589999864
No 77
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=50.49 E-value=1e+02 Score=26.85 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCC-CCcHH---HHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYG-PHTNE---ILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~g~sE---~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 111 (343)
++++...+.+.+.+.|..|+=|+..|+ .|.+. +.+.+.++ +. +-.|.... .+ +.+...+-++
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~--v~IKaaGG-------ir-t~~~a~~~i~ 195 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DT--IGVKASGG-------VR-TAEDAIAMIE 195 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cC--CeEEEeCC-------CC-CHHHHHHHHH
Confidence 557778999999999999999999997 34333 33344432 22 33443322 12 7788889999
Q ss_pred HHHHHcCCCc
Q 019303 112 ASLKRLDIDC 121 (343)
Q Consensus 112 ~sL~~L~~d~ 121 (343)
.--.|+|++.
T Consensus 196 aGa~riGts~ 205 (211)
T TIGR00126 196 AGASRIGASA 205 (211)
T ss_pred HhhHHhCcch
Confidence 9999999875
No 78
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=49.99 E-value=1.1e+02 Score=28.31 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcC
Q 019303 39 DMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLD 118 (343)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~ 118 (343)
.-+++|+.+-+.|| .+|.|.. |++.+=+++.- -+..+|+|......- .+..++---++++...++=|
T Consensus 150 ~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~~--s~~PviaSHSN~~al-----~~h~RNl~D~qlkaI~~~gG 216 (313)
T COG2355 150 FGKELVREMNELGI-IIDLSHL-----SDKTFWDVLDL--SKAPVVASHSNARAL-----VDHPRNLSDEQLKAIAETGG 216 (313)
T ss_pred HHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHhc--cCCceEEecCCchhc-----cCCCCCCCHHHHHHHHhcCC
Confidence 36799999999999 9999987 77777777764 455677777654421 12222223344555555555
Q ss_pred CCcccEEEeecC-----CCCCCHHHHHHHHHHHHHhCCccEEeCCC
Q 019303 119 IDCIDLYYQHRI-----DTRVPIEVTIGELKKLVEEGKIKYIGLSE 159 (343)
Q Consensus 119 ~d~iDl~~lH~p-----~~~~~~~~~~~~l~~l~~~G~ir~iGvSn 159 (343)
+ |.+.++-.. ....+++++.+.+..+++.+=+++||+.+
T Consensus 217 v--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 217 V--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred E--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 3 444433222 23457899999999999998899999976
No 79
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=49.31 E-value=71 Score=32.71 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=46.5
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCC-CCcHHHHHHHhcCCCeeEEeeecc
Q 019303 115 KRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEWS 182 (343)
Q Consensus 115 ~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~n 182 (343)
..+|.|++=+++...-....+.+.....+.+....-.+..+||- |-+++.+.++.+...++++|+.-+
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~ 88 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGA 88 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 55899999987555433334455523333333333357789985 788999999888889999999643
No 80
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=49.11 E-value=25 Score=23.98 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHH
Q 019303 250 RVNEIATRKGCTPSQLALAWVH 271 (343)
Q Consensus 250 ~l~~~a~~~g~s~aqlal~w~l 271 (343)
.+.+||+++|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4678999999999999999974
No 81
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=48.49 E-value=1.6e+02 Score=24.46 Aligned_cols=98 Identities=18% Similarity=0.136 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCC-CEEEEeecccccCCCCCCCCCCHHHHHHHHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRE-RVELATKFGISFADGKREIRGDPAYVRAACEASL 114 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 114 (343)
+.+...++++.+++.|++-+-+.. ..+-.+.+. .++ ++-|..+++.... ....+...+.+++.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~~~------~~~~~~~~~~a~~a- 74 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFPTG------LTTTEVKVAEVEEA- 74 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCCCC------CCcHHHHHHHHHHH-
Confidence 678889999999999999886653 233333322 234 5777778775411 01134455555554
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHh
Q 019303 115 KRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE 149 (343)
Q Consensus 115 ~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~ 149 (343)
.++|.|.+.+..-+...+....+++.+.+.++.+.
T Consensus 75 ~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 75 IDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred HHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH
Confidence 45586655543222211111235555555555543
No 82
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=48.46 E-value=2.6e+02 Score=26.96 Aligned_cols=147 Identities=19% Similarity=0.168 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHcCCC-eEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccC---CCCCCCCCCHHHHHHHHH
Q 019303 36 PESDMIALIHHAINSGIT-LLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFA---DGKREIRGDPAYVRAACE 111 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~-~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~---~~~~~~~~~~~~i~~~~~ 111 (343)
+.+.-.+-++.|++.|-. ..|-+. .| .-..+-+.+-+ ...+-|-| +..+.. ......+.+++.+.+.++
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-Gg---dl~~iR~~il~--~s~vpvGT-VPiYqa~~~~~~~~~~mt~d~~~~~ie 147 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLST-GG---DLDEIRKAILD--AVPVPVGT-VPIYQAAEKVHGAVEDMDEDDMFRAIE 147 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHHH--cCCCCccC-ccHHHHHHHhcCChhhCCHHHHHHHHH
Confidence 445555668999999976 445543 34 23333333322 11121211 111000 001224678888888887
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCCCeeEEeeeccccccchhhc
Q 019303 112 ASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAE 191 (343)
Q Consensus 112 ~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~ 191 (343)
+-.+ |-+|.+-+|.-- +.+.++.++++|+ ..|+-+-...-+...+... -.=|++...+ +.
T Consensus 148 ~qa~----dGVDfmTiH~Gi-------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~------~~ENPlye~f-D~ 207 (423)
T TIGR00190 148 KQAK----DGVDFMTIHAGV-------LLEYVERLKRSGR--ITGIVSRGGAILAAWMLHH------HKENPLYKNF-DY 207 (423)
T ss_pred HHHH----hCCCEEEEccch-------hHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHc------CCcCchHHHH-HH
Confidence 7765 457889999742 5788889999885 5666655544444333221 1235555443 58
Q ss_pred chHHHHHcCCeEEecccccccc
Q 019303 192 IVPTCRELGIGIVAYSPLGRGF 213 (343)
Q Consensus 192 l~~~~~~~gi~v~a~spl~~G~ 213 (343)
+++.|+++++.+ +|+.|+
T Consensus 208 lLeI~~~yDVtl----SLGDgl 225 (423)
T TIGR00190 208 ILEIAKEYDVTL----SLGDGL 225 (423)
T ss_pred HHHHHHHhCeee----eccCCc
Confidence 999999999997 466655
No 83
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=48.11 E-value=2.1e+02 Score=25.74 Aligned_cols=121 Identities=14% Similarity=0.117 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCC----cHH--HHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHH
Q 019303 35 KPESDMIALIHHAINSGITLLDTSDIYGPH----TNE--ILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRA 108 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g----~sE--~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 108 (343)
.|.+...+.++..++.|++-+=.....|.+ ..| +++..+.+. -..++-|..-++.. +.+...+
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~-~~~~~~vi~gv~~~----------~~~~~i~ 83 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEA-VAGRVPVIAGVGAN----------STREAIE 83 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHH-hCCCCeEEEecCCc----------cHHHHHH
Confidence 588889999999999999988766655543 233 344444443 22344444444422 2222222
Q ss_pred HHHHHHHHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHhCCccEE----e-C--CCCcHHHHHHHhc
Q 019303 109 ACEASLKRLDIDCIDLYYQHRIDTRV-PIEVTIGELKKLVEEGKIKYI----G-L--SEASASTIRRAHA 170 (343)
Q Consensus 109 ~~~~sL~~L~~d~iDl~~lH~p~~~~-~~~~~~~~l~~l~~~G~ir~i----G-v--Sn~~~~~l~~~~~ 170 (343)
.. +..+.+| +|-+++.-|.... ..+++++.+.++.+.-.+--+ - . .+.+++.+.++.+
T Consensus 84 ~a-~~a~~~G---ad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 84 LA-RHAEEAG---ADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HH-HHHHHcC---CCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence 22 2335666 4555555554322 345666666666665222111 1 1 2345667777665
No 84
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=48.10 E-value=1.4e+02 Score=28.74 Aligned_cols=84 Identities=7% Similarity=-0.017 Sum_probs=61.0
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHhCCcc-EEeCCCCcHHHHHHHhcCCCeeEEeeecccccc-chhhcchHHHHHc
Q 019303 122 IDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCREL 199 (343)
Q Consensus 122 iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~ 199 (343)
.++.++-.|-+. +.++.+.+|++.-.|. ..|=|-++...++.+++...++++|+...-.-. ..-..+.+.|+.+
T Consensus 232 ~~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~ 307 (404)
T PRK15072 232 YRLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALY 307 (404)
T ss_pred cCCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHc
Confidence 355566555432 2367788888887665 667788899999999988888999987665432 1124789999999
Q ss_pred CCeEEecccc
Q 019303 200 GIGIVAYSPL 209 (343)
Q Consensus 200 gi~v~a~spl 209 (343)
|+.++.++..
T Consensus 308 gi~~~~h~~~ 317 (404)
T PRK15072 308 QVRTGSHGPT 317 (404)
T ss_pred CCceeeccCc
Confidence 9999886554
No 85
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=48.02 E-value=2.4e+02 Score=27.89 Aligned_cols=169 Identities=13% Similarity=0.181 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEeCcCCCCCCc---HHHHHHHH--hhc-CCCCCEEEEeecc--cccCC-----------
Q 019303 35 KPESDMIALIHHAINS-GITLLDTSDIYGPHT---NEILLGKA--LKG-GMRERVELATKFG--ISFAD----------- 94 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~-Gi~~~DTA~~Yg~g~---sE~~lG~a--l~~-~~R~~~~i~tK~~--~~~~~----------- 94 (343)
.+.+...++++.+++. +++.=|.+..+.... -|.+.-.| ++. .-.+.+++.+=+. +....
T Consensus 28 ~~~~~v~~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~Gn~I~lfapLyiSN~C~n~C~YCgfs~~n 107 (469)
T PRK09613 28 PDKDEIREILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIYGNRIVLFAPLYISNYCVNNCVYCGFRRSN 107 (469)
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHcCCEEEEEEeccccCCCCCCCccCCCccCC
Confidence 3556678888888863 666666665553211 22222222 222 1223444433221 11111
Q ss_pred C-CCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHH----hCCccEEeCC--CCcHHHHHH
Q 019303 95 G-KREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVE----EGKIKYIGLS--EASASTIRR 167 (343)
Q Consensus 95 ~-~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~----~G~ir~iGvS--n~~~~~l~~ 167 (343)
. ......+.+.|.+.++. +...|...+-|+.=..| +..+++.+.+.+..+++ .|.++.|+++ ..+.+.+++
T Consensus 108 ~~i~r~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~ 185 (469)
T PRK09613 108 KEIKRKKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKK 185 (469)
T ss_pred CCCCceECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHH
Confidence 1 11234688999998875 57799777766422222 33567777777777776 4677776664 366778877
Q ss_pred HhcC--CCeeEEeeeccc-----ccc-----chh--hcchHHHHHcCCeEEe
Q 019303 168 AHAV--HPITAVQLEWSL-----WSR-----DVE--AEIVPTCRELGIGIVA 205 (343)
Q Consensus 168 ~~~~--~~~~~~q~~~n~-----~~~-----~~~--~~l~~~~~~~gi~v~a 205 (343)
+.+. ..+...|--||. +++ ..+ -+.++.+++.||.-+.
T Consensus 186 LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg 237 (469)
T PRK09613 186 LKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVG 237 (469)
T ss_pred HHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeC
Confidence 7665 344555666542 111 111 2567788888987433
No 86
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=47.99 E-value=1.8e+02 Score=24.90 Aligned_cols=145 Identities=13% Similarity=0.056 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhc----CCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG----GMRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 111 (343)
|.+.+.+++..+++.|+...|.- +..+..+++. ..+++++++-= ....+.++..+.
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~vG~~w~~~~i~va~e------------~~as~~~~~~l~ 68 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDII--------EEGLAPGMDIVGDKYEEGEIFVPEL------------LMAADAMKAGLD 68 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHccCCeeHHHH------------HHHHHHHHHHHH
Confidence 67889999999999997655432 2233333332 13455554321 112333444444
Q ss_pred HHHHHcCCCc---ccEEEeecCCCCCCHHHHHHHHHHHHHhCC-ccEEeCCCCcHHHHHHHhcCCCeeEEeeeccccccc
Q 019303 112 ASLKRLDIDC---IDLYYQHRIDTRVPIEVTIGELKKLVEEGK-IKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRD 187 (343)
Q Consensus 112 ~sL~~L~~d~---iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~ 187 (343)
.....+.... ---+++-.+..+...-...-.-.-|+..|. +.++| .+.+.+.+.++.....++++-+..+.....
T Consensus 69 ~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~ 147 (201)
T cd02070 69 LLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTTM 147 (201)
T ss_pred HHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccH
Confidence 4444443221 113344444332222222222334566777 56778 566777777777777778877766544432
Q ss_pred -hhhcchHHHHHcCC
Q 019303 188 -VEAEIVPTCRELGI 201 (343)
Q Consensus 188 -~~~~l~~~~~~~gi 201 (343)
.-.++++.+++.+.
T Consensus 148 ~~~~~~i~~lr~~~~ 162 (201)
T cd02070 148 GGMKEVIEALKEAGL 162 (201)
T ss_pred HHHHHHHHHHHHCCC
Confidence 12477788887753
No 87
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=47.66 E-value=1.2e+02 Score=25.83 Aligned_cols=47 Identities=15% Similarity=0.108 Sum_probs=28.5
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHH
Q 019303 112 ASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTI 165 (343)
Q Consensus 112 ~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 165 (343)
+....++ +|.++||..++ . +..+.+.+......++.+|++++....+
T Consensus 67 ~ia~~~~---~d~Vqlhg~e~---~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 67 EIAEELG---LDVVQLHGDES---P-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred HHHHhcC---CCEEEECCCCC---H-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 3344555 78899998642 1 2333343333346788999998765443
No 88
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=47.40 E-value=1.3e+02 Score=28.43 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQH 128 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH 128 (343)
.-+.+.+++.++..+ +|+.+++.+|.+.
T Consensus 171 gqt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 171 GESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 457777877776554 5999999988876
No 89
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=47.21 E-value=1.9e+02 Score=25.16 Aligned_cols=97 Identities=16% Similarity=0.113 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhc---CCCeeEE
Q 019303 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHA---VHPITAV 177 (343)
Q Consensus 101 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~---~~~~~~~ 177 (343)
++.+.. ..+-+.|.++|+++|++- .|.......+.++.+.+.... .+-.+++....+.++.+.+ ...++.+
T Consensus 11 ~~~~~k-~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEK-LEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHH-HHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHH-HHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 455554 446667999999998886 332222233455555555555 4444555555566655433 2344444
Q ss_pred eeeccccc--c------------chhhcchHHHHHcCCeE
Q 019303 178 QLEWSLWS--R------------DVEAEIVPTCRELGIGI 203 (343)
Q Consensus 178 q~~~n~~~--~------------~~~~~l~~~~~~~gi~v 203 (343)
.+..+.-. . ..-.+.+.+++++|+.+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44333322 1 01146788999999998
No 90
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=47.20 E-value=1.7e+02 Score=26.36 Aligned_cols=109 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCH------HHHHHHHHHHHH-hCCccEEeCCCCcHHHHHHHh
Q 019303 97 REIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPI------EVTIGELKKLVE-EGKIKYIGLSEASASTIRRAH 169 (343)
Q Consensus 97 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~------~~~~~~l~~l~~-~G~ir~iGvSn~~~~~l~~~~ 169 (343)
....++.+...+-++. |.++|+|+|++=+.......... .+.++.+..+.+ .-++..+.-........-...
T Consensus 13 ~~~~f~~~~~~~ia~~-L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a 91 (266)
T cd07944 13 NNWDFGDEFVKAIYRA-LAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPA 91 (266)
T ss_pred cCccCCHHHHHHHHHH-HHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHH
Q ss_pred cCCCeeEEeeeccccccchhhcchHHHHHcCCeEEec
Q 019303 170 AVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 206 (343)
Q Consensus 170 ~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 206 (343)
....++.+.+.+..-....-.+.+++++++|+.+...
T Consensus 92 ~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 92 SGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred hcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
No 91
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=47.15 E-value=1.6e+02 Score=26.37 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCC-----CCCHHHHHHHHHHHHHh-CCccEEeCC---CCcHHHHHHHhc
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDT-----RVPIEVTIGELKKLVEE-GKIKYIGLS---EASASTIRRAHA 170 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~-----~~~~~~~~~~l~~l~~~-G~ir~iGvS---n~~~~~l~~~~~ 170 (343)
.++.+... ++-+.|.++|+++|.+-+...... .......++.++.+++. ..++...++ ....+.++.+.+
T Consensus 18 ~~~~~~k~-~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQVR-AIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 44555554 466669999999999975432110 00111234455555443 335655553 223566777665
Q ss_pred CCCeeEEeeeccccccchhhcchHHHHHcCCeEEec
Q 019303 171 VHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 206 (343)
Q Consensus 171 ~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 206 (343)
. .++.+.+..+.-+-..-.+.+++++++|+.+...
T Consensus 97 ~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 L-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred c-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 4 4555555444332222357888899999876553
No 92
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=47.09 E-value=2e+02 Score=25.25 Aligned_cols=144 Identities=13% Similarity=0.025 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEE--------------eecccccCCCCCCCCC
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELA--------------TKFGISFADGKREIRG 101 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~--------------tK~~~~~~~~~~~~~~ 101 (343)
+.+++.++ ++.|+..+..+...-. +-..+-++.+....+++.++ |+.|... ...
T Consensus 82 s~~d~~~~----l~~G~~~v~ig~~~~~--~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~------~~~ 149 (243)
T cd04731 82 SLEDARRL----LRAGADKVSINSAAVE--NPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKP------TGL 149 (243)
T ss_pred CHHHHHHH----HHcCCceEEECchhhh--ChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCcee------cCC
Confidence 44554444 4468888877764432 33445555554333344433 3333211 011
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHH-HHHHHHHHHHHhCCccEEeCCC-CcHHHHHHHhcCCCeeEEee
Q 019303 102 DPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIE-VTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 102 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~-~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~~~q~ 179 (343)
+. ..+-+.+..+| +|.+.+|..+...... --++.+.++++.-.+.-|.... .+++.+.++++....+.+++
T Consensus 150 ~~----~~~~~~l~~~G---~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 150 DA----VEWAKEVEELG---AGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred CH----HHHHHHHHHCC---CCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 21 12334456666 4556666654321111 1255556666655566555554 35677777776655555555
Q ss_pred eccccccch-hhcchHHHHH
Q 019303 180 EWSLWSRDV-EAEIVPTCRE 198 (343)
Q Consensus 180 ~~n~~~~~~-~~~l~~~~~~ 198 (343)
---+..... ..++..+|++
T Consensus 223 g~al~~~~~~~~~~~~~~~~ 242 (243)
T cd04731 223 ASIFHFGEYTIAELKEYLAE 242 (243)
T ss_pred eHHHHcCCCCHHHHHHHHhh
Confidence 322222211 2345555554
No 93
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=47.00 E-value=1.7e+02 Score=27.38 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=51.0
Q ss_pred HHHHHHHHHhCCcc-EEeCCCCcHHHHHHHhcCCCeeEEeeeccccccchhhcchHHHHHcCCeEEeccccccc
Q 019303 140 IGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 140 ~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 212 (343)
++.|.+++++-.|. +.|=|-++...+.+++.....+++|+..+.+-. -.+++..|+++||.++..+.+..+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG--it~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG--VRAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC--HHHHHHHHHHcCCcEEEeCCcccH
Confidence 56666776664443 455566778888888877788888887776543 246778899999999888777554
No 94
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=46.83 E-value=2.2e+02 Score=25.70 Aligned_cols=109 Identities=8% Similarity=-0.051 Sum_probs=62.9
Q ss_pred cceeccccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCC
Q 019303 19 AQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKRE 98 (343)
Q Consensus 19 ~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~ 98 (343)
.||.++|.....-|.-.++....+-..+.+...+|.+..-..|-.-.+++.+-+|.++ ..+++..+-|+..... +
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~p~~~t~~~W~~~-~p~~FrFsvK~~~~iT----H 78 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAPPSPETVLRWAEE-TPDDFRFSVKAPRAIT----H 78 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCCCCHHHHHHHHHh-CCCCeEEEEEeccccc----c
Confidence 4666666654322221122112222234445567777655433333477778888876 7899999999875321 0
Q ss_pred CCCC---HHHHHHHHHHHHHHcCCCcccEEEeecCCCC
Q 019303 99 IRGD---PAYVRAACEASLKRLDIDCIDLYYQHRIDTR 133 (343)
Q Consensus 99 ~~~~---~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~ 133 (343)
.... ...+.+.+.+-++.|| +.+..+++.-|...
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 79 QRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred hhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 1111 2344555555566777 58999999988654
No 95
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=46.40 E-value=1.9e+02 Score=27.50 Aligned_cols=85 Identities=16% Similarity=0.047 Sum_probs=57.9
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHh------CCccEEeCCCCcHHHHHHHhcCCCeeEEeeeccccccc-hhhcchHHHH
Q 019303 125 YYQHRIDTRVPIEVTIGELKKLVEE------GKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTCR 197 (343)
Q Consensus 125 ~~lH~p~~~~~~~~~~~~l~~l~~~------G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~~ 197 (343)
+++-.|-+..+.++-++.+.++++. +.=-..|=|.++.+.++++++....+++|+..+-.-.- .-..+.++|+
T Consensus 230 ~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~ 309 (369)
T cd03314 230 LRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCK 309 (369)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHH
Confidence 4555554333322446777777776 33335567778899999998888888999887754321 1257899999
Q ss_pred HcCCeEEecccc
Q 019303 198 ELGIGIVAYSPL 209 (343)
Q Consensus 198 ~~gi~v~a~spl 209 (343)
.+||.++..+..
T Consensus 310 a~Gi~~~~h~~~ 321 (369)
T cd03314 310 EHGVGAYLGGSC 321 (369)
T ss_pred HcCCcEEEeCCC
Confidence 999999986543
No 96
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=46.38 E-value=97 Score=33.30 Aligned_cols=72 Identities=15% Similarity=0.053 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHHHcC--------------------------CCcccEEEeecCCCCCCH---HHHHHHHHHHHHhC
Q 019303 100 RGDPAYVRAACEASLKRLD--------------------------IDCIDLYYQHRIDTRVPI---EVTIGELKKLVEEG 150 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~--------------------------~d~iDl~~lH~p~~~~~~---~~~~~~l~~l~~~G 150 (343)
+....++.+.++.+|+.++ +....+++|..|....+. ..+|+.+.++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4456788888999999887 245788888888765543 57999999999999
Q ss_pred CccEEeCCCCcHHHHHHHhcCCC
Q 019303 151 KIKYIGLSEASASTIRRAHAVHP 173 (343)
Q Consensus 151 ~ir~iGvSn~~~~~l~~~~~~~~ 173 (343)
+ +|=+.+|+.++.+.++....
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhhhh
Confidence 9 99999999999998877643
No 97
>PRK00208 thiG thiazole synthase; Reviewed
Probab=46.23 E-value=2.2e+02 Score=25.50 Aligned_cols=105 Identities=12% Similarity=-0.001 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCCCeeEEe
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR-VPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q 178 (343)
..+.+...+-.+-..+-++++.|=|=.+..+... .+..+++++.++|.++|.+-. =+++-++...+++.+. .+++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vl-pyc~~d~~~ak~l~~~-G~~~vm 149 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEEA-GCAAVM 149 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHc-CCCEeC
Confidence 4577777787888888889998888777766543 467899999999999998644 2455566666555554 344443
Q ss_pred eeccccccc---hhhcchHHHHH-cCCeEEec
Q 019303 179 LEWSLWSRD---VEAEIVPTCRE-LGIGIVAY 206 (343)
Q Consensus 179 ~~~n~~~~~---~~~~l~~~~~~-~gi~v~a~ 206 (343)
.-=+++-.. ...+++....+ .++.|++-
T Consensus 150 Plg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 150 PLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 211222111 01345666655 47777653
No 98
>PLN02389 biotin synthase
Probab=46.04 E-value=2.8e+02 Score=26.57 Aligned_cols=101 Identities=16% Similarity=0.131 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCC-C-CC--cHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHH
Q 019303 35 KPESDMIALIHHAINSGITLLDTSDIY-G-PH--TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAAC 110 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Y-g-~g--~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 110 (343)
.+.++..+.++.+.+.|++.|-..... + .+ ..-+.+-+.++......+.|....|.. +.+ .
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l----------~~E-----~ 180 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGML----------EKE-----Q 180 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCC----------CHH-----H
Confidence 477888888888999999987432111 1 11 012344455554332334455444322 332 3
Q ss_pred HHHHHHcCCCcccEEEeec-C------CCCCCHHHHHHHHHHHHHhCC
Q 019303 111 EASLKRLDIDCIDLYYQHR-I------DTRVPIEVTIGELKKLVEEGK 151 (343)
Q Consensus 111 ~~sL~~L~~d~iDl~~lH~-p------~~~~~~~~~~~~l~~l~~~G~ 151 (343)
-+-|+..|+|++-+-+ .. + -....+++.++.++.+++.|.
T Consensus 181 l~~LkeAGld~~~~~L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 181 AAQLKEAGLTAYNHNL-DTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHHcCCCEEEeee-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 3445566777643321 10 1 112457888999999999985
No 99
>smart00642 Aamy Alpha-amylase domain.
Probab=45.49 E-value=25 Score=29.29 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=17.7
Q ss_pred hhcchHHHHHcCCeEEeccccc
Q 019303 189 EAEIVPTCRELGIGIVAYSPLG 210 (343)
Q Consensus 189 ~~~l~~~~~~~gi~v~a~spl~ 210 (343)
-+.+++.||++||.|+.=-++.
T Consensus 72 ~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 72 FKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHCCCEEEEEECCC
Confidence 3689999999999998755554
No 100
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=44.97 E-value=3.1e+02 Score=26.89 Aligned_cols=113 Identities=13% Similarity=0.082 Sum_probs=59.6
Q ss_pred cCCCCCCcHHHHHHHHhhc----CC-CCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHH-HcCCCcccEEEeecCC
Q 019303 58 SDIYGPHTNEILLGKALKG----GM-RERVELATKFGISFADGKREIRGDPAYVRAACEASLK-RLDIDCIDLYYQHRID 131 (343)
Q Consensus 58 A~~Yg~g~sE~~lG~al~~----~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~-~L~~d~iDl~~lH~p~ 131 (343)
.-.|| .|+-|-++|+. .+ .+=++|.|-+.... ..-+.+.+.+.+++-++ ...--.+.++.+|.|+
T Consensus 65 d~VfG---G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~ei------IGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpg 135 (454)
T cd01973 65 SAVFG---GAKRVEEGVLVLARRYPDLRVIPIITTCSTEI------IGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPS 135 (454)
T ss_pred ceEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHhh------hccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCC
Confidence 34788 56667777765 22 23367877765432 11233344333333221 1110137899999998
Q ss_pred CCCCH-HHHHHHHHHHHH--------hCCccEEeCCC--CcHHHHHHHhcCCCeeEEee
Q 019303 132 TRVPI-EVTIGELKKLVE--------EGKIKYIGLSE--ASASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 132 ~~~~~-~~~~~~l~~l~~--------~G~ir~iGvSn--~~~~~l~~~~~~~~~~~~q~ 179 (343)
..... ...-.+++.+.+ +++|.-||-.+ .+.+.++++++...+.++.+
T Consensus 136 F~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 136 FKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred cCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 76432 223333333332 46688887443 34466777777666665543
No 101
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=44.86 E-value=35 Score=27.29 Aligned_cols=25 Identities=40% Similarity=0.635 Sum_probs=21.1
Q ss_pred cchhhcchHHHHHcCCeEEeccccc
Q 019303 186 RDVEAEIVPTCRELGIGIVAYSPLG 210 (343)
Q Consensus 186 ~~~~~~l~~~~~~~gi~v~a~spl~ 210 (343)
+....++++.|+++||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4445789999999999999988775
No 102
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=44.78 E-value=2.6e+02 Score=25.95 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCC----------CCC--CcHHHHHHHHhhcC-CCCCEEEEeecccccCCCCCCCCCC
Q 019303 36 PESDMIALIHHAINSGITLLDTSDI----------YGP--HTNEILLGKALKGG-MRERVELATKFGISFADGKREIRGD 102 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~----------Yg~--g~sE~~lG~al~~~-~R~~~~i~tK~~~~~~~~~~~~~~~ 102 (343)
+.++..+..+.+.+.|+..||.--. +|. ...-+.+.+.++.. ..-++-|+.|+...+. .+
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~-------~~ 147 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA-------PE 147 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc-------CC
Confidence 5677777777778899999995432 221 11233444444331 1113457777753321 11
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCH--HHHHHHHHHHHHhCCccEEeCCC-CcHHHHHHHhcCCCeeEEee
Q 019303 103 PAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPI--EVTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 103 ~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~--~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~~~q~ 179 (343)
.... ..+-+-++..| +|.+.+|.-...... ..-|+.+.++++.=.|--||... .++++++++++....+.+|+
T Consensus 148 ~~~~-~~~a~~le~~G---~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 148 HRNC-VEIAQLAEDCG---IQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred cchH-HHHHHHHHHhC---CCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 1112 23334467777 466778865322111 12377778888877788888777 47888888887777788877
Q ss_pred e
Q 019303 180 E 180 (343)
Q Consensus 180 ~ 180 (343)
-
T Consensus 224 G 224 (321)
T PRK10415 224 G 224 (321)
T ss_pred C
Confidence 4
No 103
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=44.74 E-value=26 Score=26.63 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=40.3
Q ss_pred CCCcHHHHHHHhcCCCeeEEeeecccccc-chhhcchHHHHHcCCeEEeccccccc
Q 019303 158 SEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 158 Sn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~spl~~G 212 (343)
|.++...++++++...++++|+.....-. ..-..+.++|+++|+.++..+. .++
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 56788889999988888999987655421 1125799999999999999886 443
No 104
>PRK09061 D-glutamate deacylase; Validated
Probab=44.71 E-value=2e+02 Score=28.60 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=63.1
Q ss_pred HHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCC
Q 019303 40 MIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDI 119 (343)
Q Consensus 40 ~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~ 119 (343)
..++++.|++.|+..|=+...|-.+.+...+-+.++...+-...|...+.... ..++.....++++.++....
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~-------~~~~~~e~~av~~~i~lA~~ 243 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLS-------NVDPRSSVDAYQELIAAAAE 243 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcc-------cCCchhHHHHHHHHHHHHHH
Confidence 57778889999999998766675444555565665543444566666554220 01112222334444333221
Q ss_pred CcccEEEeecCCC-CCCHHHHHHHHHHHHHhCCccEEeC
Q 019303 120 DCIDLYYQHRIDT-RVPIEVTIGELKKLVEEGKIKYIGL 157 (343)
Q Consensus 120 d~iDl~~lH~p~~-~~~~~~~~~~l~~l~~~G~ir~iGv 157 (343)
--.-+.+.|--.. ..+..+.++.+++++++|.--..-+
T Consensus 244 ~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~ 282 (509)
T PRK09061 244 TGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEA 282 (509)
T ss_pred hCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEe
Confidence 1134666676432 2346788999999999985333333
No 105
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=44.38 E-value=1.1e+02 Score=27.53 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHHcCC--------------------------CcccEEEeecCCCCCCH---HHHHHHHHHHHHhCCc
Q 019303 102 DPAYVRAACEASLKRLDI--------------------------DCIDLYYQHRIDTRVPI---EVTIGELKKLVEEGKI 152 (343)
Q Consensus 102 ~~~~i~~~~~~sL~~L~~--------------------------d~iDl~~lH~p~~~~~~---~~~~~~l~~l~~~G~i 152 (343)
+.+. ++.++++|++.|. ...|+++|..|-...+. .++++-|.+|+++|+
T Consensus 113 ~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~- 190 (254)
T COG1121 113 NKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK- 190 (254)
T ss_pred cHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC-
Confidence 4444 6889999999883 46799999999766654 478999999999987
Q ss_pred cEEeCCCCcHHHHHHH
Q 019303 153 KYIGLSEASASTIRRA 168 (343)
Q Consensus 153 r~iGvSn~~~~~l~~~ 168 (343)
.|=+.+|+...+.+.
T Consensus 191 -tIl~vtHDL~~v~~~ 205 (254)
T COG1121 191 -TVLMVTHDLGLVMAY 205 (254)
T ss_pred -EEEEEeCCcHHhHhh
Confidence 666677776665544
No 106
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=44.36 E-value=3.2e+02 Score=27.28 Aligned_cols=89 Identities=17% Similarity=0.281 Sum_probs=48.4
Q ss_pred ccEEEeecCCCCCCH----HHHHHHHHHH---------------HHhCCccEEeCCC------CcHHHHHHHhcCCCeeE
Q 019303 122 IDLYYQHRIDTRVPI----EVTIGELKKL---------------VEEGKIKYIGLSE------ASASTIRRAHAVHPITA 176 (343)
Q Consensus 122 iDl~~lH~p~~~~~~----~~~~~~l~~l---------------~~~G~ir~iGvSn------~~~~~l~~~~~~~~~~~ 176 (343)
++++.+|.|...... +.+++++.+. ...++|.-||.++ .+.+.|+++++...+.+
T Consensus 117 ~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~v 196 (513)
T CHL00076 117 SDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEI 196 (513)
T ss_pred CCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeE
Confidence 689999999765322 2223332221 1235688898774 34566777777655555
Q ss_pred Eee----------------eccccc-cchhhcchHHHH-HcCCeEEeccccc
Q 019303 177 VQL----------------EWSLWS-RDVEAEIVPTCR-ELGIGIVAYSPLG 210 (343)
Q Consensus 177 ~q~----------------~~n~~~-~~~~~~l~~~~~-~~gi~v~a~spl~ 210 (343)
+.+ ..|+.. +.....+-++.+ +.|++++...|++
T Consensus 197 n~v~~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 197 NQIIPEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred EEEECCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 522 122221 111122334443 5589888777875
No 107
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=44.17 E-value=3.2e+02 Score=26.75 Aligned_cols=86 Identities=8% Similarity=0.070 Sum_probs=56.8
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhCCcc-EEeCCCCcHHHHHHHhcCCCeeEEeeeccccccchhhcchHHHHHcCCe
Q 019303 124 LYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIG 202 (343)
Q Consensus 124 l~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 202 (343)
+.++-.|-+..+..+-++.|.+|++...|. ..|=+.++.++++.+++...++++|......--..-..+.+.|+.+||.
T Consensus 252 ~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCE
Confidence 345555543322112377788888876654 4466778889999988887788888875321111124789999999999
Q ss_pred EEecccc
Q 019303 203 IVAYSPL 209 (343)
Q Consensus 203 v~a~spl 209 (343)
+..++..
T Consensus 332 v~~h~~~ 338 (441)
T TIGR03247 332 WGSHSNN 338 (441)
T ss_pred EEEeCCc
Confidence 8776543
No 108
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=43.85 E-value=68 Score=26.09 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=42.7
Q ss_pred cEEeCCCCc--HHHHHHHhcCCCeeEEeeeccccccchhhcchHHHHHcCCeEEeccccccccCC
Q 019303 153 KYIGLSEAS--ASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFS 215 (343)
Q Consensus 153 r~iGvSn~~--~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~ 215 (343)
--+|...|+ ...+..+++...|+++- .-+.+. .++.+..+-++++.++.-|.+.++.++
T Consensus 18 ak~GlDgHd~gakvia~~l~d~GfeVi~---~g~~~t-p~e~v~aA~~~dv~vIgvSsl~g~h~~ 78 (143)
T COG2185 18 AKLGLDGHDRGAKVIARALADAGFEVIN---LGLFQT-PEEAVRAAVEEDVDVIGVSSLDGGHLT 78 (143)
T ss_pred eccCccccccchHHHHHHHHhCCceEEe---cCCcCC-HHHHHHHHHhcCCCEEEEEeccchHHH
Confidence 345777775 45678888888888763 233333 358888889999999999999887544
No 109
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=43.69 E-value=1.4e+02 Score=28.23 Aligned_cols=60 Identities=12% Similarity=0.004 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee-cCCCC-----------C-CHH---HH-HHHHHHHHHhCCccEEeCCCCc
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQH-RIDTR-----------V-PIE---VT-IGELKKLVEEGKIKYIGLSEAS 161 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH-~p~~~-----------~-~~~---~~-~~~l~~l~~~G~ir~iGvSn~~ 161 (343)
.-+.+.+.+.++. +.+|+.+++.+|.+. .|... . +.+ +. -.+++.|.+.|. ..+++|||.
T Consensus 163 gqt~~~~~~~l~~-~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~~~~~~fa 239 (377)
T PRK08599 163 GQTIEDFKESLAK-ALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF-HQYEISNFA 239 (377)
T ss_pred CCCHHHHHHHHHH-HHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-cEeeeeeee
Confidence 4477778777765 466999998888654 22110 0 111 12 235566666675 467888875
No 110
>PLN02363 phosphoribosylanthranilate isomerase
Probab=43.65 E-value=67 Score=28.90 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCC-CCcHHHHHHHhcCCCeeEEeee
Q 019303 102 DPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLE 180 (343)
Q Consensus 102 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~ 180 (343)
+++.++.+ .++|.|++=+++...-....+.+. .+.+.+......++.+||. |-+++.+.++.+...++++|+.
T Consensus 56 ~~eda~~a-----~~~GaD~iGfIf~~~SpR~Vs~e~-a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAMA-----VEAGADFIGMILWPKSKRSISLSV-AKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHHH-----HHcCCCEEEEecCCCCCCcCCHHH-HHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 45555444 458999999874332222233443 3333333333246679985 7889999999888899999996
Q ss_pred c
Q 019303 181 W 181 (343)
Q Consensus 181 ~ 181 (343)
-
T Consensus 130 G 130 (256)
T PLN02363 130 G 130 (256)
T ss_pred C
Confidence 4
No 111
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=43.50 E-value=1.4e+02 Score=29.09 Aligned_cols=61 Identities=13% Similarity=-0.079 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCC-CC-----C-CHH---HHH-HHHHHHHHhCCccEEeCCCCcH
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRID-TR-----V-PIE---VTI-GELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~-~~-----~-~~~---~~~-~~l~~l~~~G~ir~iGvSn~~~ 162 (343)
.-+.+.+.+.++..+ +|+.++|.+|.+.-.. .. . ..+ +.+ .+.+.|.+.|. +.+++|||.-
T Consensus 204 ~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 204 GQTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 457788888777776 5899999998775321 10 0 111 223 34555666675 5689999864
No 112
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=43.17 E-value=2.8e+02 Score=25.77 Aligned_cols=104 Identities=17% Similarity=0.079 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHc-CCCeEeCcCCCCCCcHHHHHHHHh---hcC-CCCCEEEEeecccccCCCCCCCCCCHHHHHHHH
Q 019303 36 PESDMIALIHHAINS-GITLLDTSDIYGPHTNEILLGKAL---KGG-MRERVELATKFGISFADGKREIRGDPAYVRAAC 110 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~-Gi~~~DTA~~Yg~g~sE~~lG~al---~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 110 (343)
+.++..+++++..++ ||+.+--+..=..=.+...+.+.+ ++. ....+-|.|+.... .+..+...+
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~----------~p~rit~el 189 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA----------DPARVTPAL 189 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCccc----------ChhhcCHHH
Confidence 556777778777655 887552221000001222233333 322 22345667765321 233444555
Q ss_pred HHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCC
Q 019303 111 EASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGK 151 (343)
Q Consensus 111 ~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ 151 (343)
-+.|++.|. . ..+.+|...+..-.+++.++++.|++.|.
T Consensus 190 l~~L~~~g~-~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi 228 (321)
T TIGR03822 190 IAALKTSGK-T-VYVALHANHARELTAEARAACARLIDAGI 228 (321)
T ss_pred HHHHHHcCC-c-EEEEecCCChhhcCHHHHHHHHHHHHcCC
Confidence 566677773 2 35777875544335778899999998885
No 113
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=43.11 E-value=1.2e+02 Score=29.81 Aligned_cols=61 Identities=16% Similarity=0.236 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEe-ecCC----------CCC-CHHH---HHH-HHHHHHHhCCccEEeCCCCcH
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQ-HRID----------TRV-PIEV---TIG-ELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~l-H~p~----------~~~-~~~~---~~~-~l~~l~~~G~ir~iGvSn~~~ 162 (343)
.-+.+.+.+.++..++ |+.++|.+|.+ +.|. ... +.++ .++ +.+.|.+.|. ..++++||.-
T Consensus 214 gqt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 214 KQTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 3478888887776554 89999999876 2221 001 1222 223 3444555665 6799999864
No 114
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=42.65 E-value=1.7e+02 Score=26.31 Aligned_cols=78 Identities=13% Similarity=0.045 Sum_probs=52.4
Q ss_pred CHH-HHHHHHHHHHHcCCCeEeCcCCCCC-CcHHH---HHHHHhhcC-CCCCEEEEeecccccCCCCCCCCCCHHHHHHH
Q 019303 36 PES-DMIALIHHAINSGITLLDTSDIYGP-HTNEI---LLGKALKGG-MRERVELATKFGISFADGKREIRGDPAYVRAA 109 (343)
Q Consensus 36 ~~~-~~~~~l~~A~~~Gi~~~DTA~~Yg~-g~sE~---~lG~al~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 109 (343)
+++ +...+.+.|.++|..|+=|+..|+. |.+.+ ++-+.+++. ...+ +--|.... -.+.+...+-
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGG--------Irt~~~A~~~ 213 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAGG--------VRTAEDAAQY 213 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccCC--------CCCHHHHHHH
Confidence 344 4778899999999999999999974 44333 333444321 0122 33344221 2277888999
Q ss_pred HHHHHHHcCCCccc
Q 019303 110 CEASLKRLDIDCID 123 (343)
Q Consensus 110 ~~~sL~~L~~d~iD 123 (343)
++.--+.||.++++
T Consensus 214 i~ag~~~lg~~~~~ 227 (257)
T PRK05283 214 LALADEILGADWAD 227 (257)
T ss_pred HHHHHHHhChhhcC
Confidence 99999999998887
No 115
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=42.60 E-value=51 Score=32.53 Aligned_cols=124 Identities=19% Similarity=0.133 Sum_probs=68.1
Q ss_pred HHHHHHcCCCeE--eCcCCCCC--------CcHHHHHHHHhhc---CCCCCEEEEeecccccCC--------CC--CCCC
Q 019303 44 IHHAINSGITLL--DTSDIYGP--------HTNEILLGKALKG---GMRERVELATKFGISFAD--------GK--REIR 100 (343)
Q Consensus 44 l~~A~~~Gi~~~--DTA~~Yg~--------g~sE~~lG~al~~---~~R~~~~i~tK~~~~~~~--------~~--~~~~ 100 (343)
.+...+.|+..+ -||..|.- |--|.++-.+-+. ..+.++||++-+|..... +. ....
T Consensus 108 f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~vE 187 (546)
T PF01175_consen 108 FERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLIVE 187 (546)
T ss_dssp HHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEEEE
T ss_pred HHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEEEE
Confidence 445567787765 35554421 3344443333222 367889999998854210 00 0012
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcC---CCeeEE
Q 019303 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV---HPITAV 177 (343)
Q Consensus 101 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~---~~~~~~ 177 (343)
.+++ +.-+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-++.++++.+. +.+.+-
T Consensus 188 vd~~-------ri~kR~~~g~ld~~-------~~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tD 253 (546)
T PF01175_consen 188 VDPS-------RIEKRLEQGYLDEV-------TDDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTD 253 (546)
T ss_dssp S-HH-------HHHHHHHTTSSSEE-------ESSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE--
T ss_pred ECHH-------HHHHHHhCCCeeEE-------cCCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccC
Confidence 2333 34468888999975 246899999999999999999999988888888888765 334444
Q ss_pred eeec
Q 019303 178 QLEW 181 (343)
Q Consensus 178 q~~~ 181 (343)
|...
T Consensus 254 QTS~ 257 (546)
T PF01175_consen 254 QTSA 257 (546)
T ss_dssp -SST
T ss_pred CCcc
Confidence 6644
No 116
>PRK14017 galactonate dehydratase; Provisional
Probab=42.17 E-value=1.8e+02 Score=27.66 Aligned_cols=84 Identities=12% Similarity=0.081 Sum_probs=60.2
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHhCCcc-EEeCCCCcHHHHHHHhcCCCeeEEeeecccccc-chhhcchHHHHHc
Q 019303 122 IDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCREL 199 (343)
Q Consensus 122 iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~ 199 (343)
+++.++-.|-+.. .++.+.+|++...+. ..|=|.++...++.+++...++++|+..+..-. ..-..+.+.|+++
T Consensus 203 ~~~~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~ 278 (382)
T PRK14017 203 YRPMFIEEPVLPE----NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAY 278 (382)
T ss_pred cCCCeEECCCCcC----CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHc
Confidence 3444555553322 357788888887765 567778899999999888888999987665432 1235899999999
Q ss_pred CCeEEecccc
Q 019303 200 GIGIVAYSPL 209 (343)
Q Consensus 200 gi~v~a~spl 209 (343)
||.++.++..
T Consensus 279 gi~~~~h~~~ 288 (382)
T PRK14017 279 DVALAPHCPL 288 (382)
T ss_pred CCeEeecCCC
Confidence 9999887543
No 117
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=42.05 E-value=2.8e+02 Score=25.48 Aligned_cols=186 Identities=15% Similarity=0.109 Sum_probs=91.6
Q ss_pred CceeCcceeccccCCcCCCCCCCHHHHHHHHHHHHH-cCCCeEeCcCCCCCC---cHHHHHHHHhhcC--CCCCEEEEee
Q 019303 14 GLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIN-SGITLLDTSDIYGPH---TNEILLGKALKGG--MRERVELATK 87 (343)
Q Consensus 14 g~~vs~lglG~~~~g~~~g~~~~~~~~~~~l~~A~~-~Gi~~~DTA~~Yg~g---~sE~~lG~al~~~--~R~~~~i~tK 87 (343)
|.+| .|.||++.-+.+.....+.++..+.+...++ .|++.||--.-|+.- .+-..+-++|+.. .+..+.|+--
T Consensus 67 G~kV-iiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~T 145 (294)
T cd06543 67 GGDV-IVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFT 145 (294)
T ss_pred CCeE-EEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEe
Confidence 3343 3567776632111121244555555555554 499999976555431 1124455666552 2335666655
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHHcCC--CcccEEEeecCCC--CCC-HHHHHHHHHHHHHhCCccEEeCCCCcH
Q 019303 88 FGISFADGKREIRGDPAYVRAACEASLKRLDI--DCIDLYYQHRIDT--RVP-IEVTIGELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~--d~iDl~~lH~p~~--~~~-~~~~~~~l~~l~~~G~ir~iGvSn~~~ 162 (343)
+...+ ..++++.+ .+-+..+..|+ |+|.++-+..-.. ..+ ...+..+.+.++.+=+--+=+. +.
T Consensus 146 lp~~p------~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~~---s~ 214 (294)
T cd06543 146 LPVLP------TGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPKL---SD 214 (294)
T ss_pred cCCCC------CCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccCC---CH
Confidence 54321 12333322 24444455553 5555554433222 122 3455666666666533323233 33
Q ss_pred HHHHHHhcCCCeeEEeeecc--ccccchhhcchHHHHHcCCeEEeccccccc
Q 019303 163 STIRRAHAVHPITAVQLEWS--LWSRDVEAEIVPTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 163 ~~l~~~~~~~~~~~~q~~~n--~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 212 (343)
.++-..+...|- +-+.... .+....-..+.++++++||+.++|..+.+-
T Consensus 215 ~~~~~~ig~TpM-iG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 215 AELWAMIGVTPM-IGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred HHHHHHcccccc-ccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCC
Confidence 333333333221 1111110 222222358999999999999999988764
No 118
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=41.86 E-value=2.6e+02 Score=25.07 Aligned_cols=99 Identities=19% Similarity=0.115 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEE-EeecCCCC-CCHH-H---HHHHHHHHHHh-CCccEEeCCCCcHHHHHHHhcCCC
Q 019303 101 GDPAYVRAACEASLKRLDIDCIDLY-YQHRIDTR-VPIE-V---TIGELKKLVEE-GKIKYIGLSEASASTIRRAHAVHP 173 (343)
Q Consensus 101 ~~~~~i~~~~~~sL~~L~~d~iDl~-~lH~p~~~-~~~~-~---~~~~l~~l~~~-G~ir~iGvSn~~~~~l~~~~~~~~ 173 (343)
.+++.+.+..++.+ .-|.|+||+= .--+|+.. .+.+ | +...++.+++. +. -+.+-+++++.++.+++...
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 46677666655554 5689999983 12234322 2222 3 55555666655 43 47888999999999988743
Q ss_pred eeEEeeeccccccchhhcchHHHHHcCCeEEecc
Q 019303 174 ITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 174 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 207 (343)
.-++ ..+... .+++++.++++|..++.+.
T Consensus 97 ~iIN--sis~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DIIN--DVSGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CEEE--ECCCCC---CchhHHHHHHcCCcEEEEe
Confidence 2222 223322 3579999999999998854
No 119
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=41.51 E-value=2.1e+02 Score=28.42 Aligned_cols=90 Identities=8% Similarity=0.058 Sum_probs=53.2
Q ss_pred HHHHHHHcCCCcccE-------EEeecCCCCCCHHHHHHHHHHHHHhCCccE----EeCCCCcHHHHHHHhcC---CCee
Q 019303 110 CEASLKRLDIDCIDL-------YYQHRIDTRVPIEVTIGELKKLVEEGKIKY----IGLSEASASTIRRAHAV---HPIT 175 (343)
Q Consensus 110 ~~~sL~~L~~d~iDl-------~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~l~~~~~~---~~~~ 175 (343)
+-+.+++.|..++-+ -.+.........++..++++.+++.|.... +|+-+.+.+.+++.++. .+++
T Consensus 289 ll~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~ 368 (497)
T TIGR02026 289 ILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD 368 (497)
T ss_pred HHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 344555556544332 122222334567788999999999997433 57777777776654432 3333
Q ss_pred EEeeeccccccchhhcchHHHHHcCC
Q 019303 176 AVQLEWSLWSRDVEAEIVPTCRELGI 201 (343)
Q Consensus 176 ~~q~~~n~~~~~~~~~l~~~~~~~gi 201 (343)
. +.++.+.+-+..++.+.+++.+.
T Consensus 369 ~--~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 369 Q--ANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred c--eEEEEecCCCCcHHHHHHHhhcc
Confidence 3 34455655555678888877654
No 120
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=41.51 E-value=1.9e+02 Score=28.11 Aligned_cols=64 Identities=27% Similarity=0.430 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCC-ccEEeCCCCc---HHHHHHHhcC-CCee---EEeeeccccccchhhcchHHHHHcCCeEE
Q 019303 139 TIGELKKLVEEGK-IKYIGLSEAS---ASTIRRAHAV-HPIT---AVQLEWSLWSRDVEAEIVPTCRELGIGIV 204 (343)
Q Consensus 139 ~~~~l~~l~~~G~-ir~iGvSn~~---~~~l~~~~~~-~~~~---~~q~~~n~~~~~~~~~l~~~~~~~gi~v~ 204 (343)
+...++.++++|. ++++.+.+-. .+.++++++. .... .+..+-..+. +-+++...|++.||.++
T Consensus 144 v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~--Pv~EI~~icr~~~v~v~ 215 (428)
T KOG1549|consen 144 VLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQ--PVKEIVKICREEGVQVH 215 (428)
T ss_pred hhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccc--cHHHHHHHhCcCCcEEE
Confidence 4566667777775 5677776533 3444444443 2222 2222222222 24567777777777554
No 121
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=41.41 E-value=2.7e+02 Score=25.12 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc---CCCCCC----cHHHHHHHHhhcCCCC-CEEEEeecccccCCCCCCCCCCHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTS---DIYGPH----TNEILLGKALKGGMRE-RVELATKFGISFADGKREIRGDPAYVR 107 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA---~~Yg~g----~sE~~lG~al~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~i~ 107 (343)
+.++..+..+.+.+.|+..|+.- +....+ ...+.+.+.++...+. ++-|..|+... .+.+.+.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~---------~~~~~~~ 179 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY---------FDLEDIV 179 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC---------CCHHHHH
Confidence 55778888888889999999863 222211 2344555555442111 56688898753 2444554
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCC-------------C---C------HHHHHHHHHHHHHhC--CccEEeCCCC-cH
Q 019303 108 AACEASLKRLDIDCIDLYYQHRIDTR-------------V---P------IEVTIGELKKLVEEG--KIKYIGLSEA-SA 162 (343)
Q Consensus 108 ~~~~~sL~~L~~d~iDl~~lH~p~~~-------------~---~------~~~~~~~l~~l~~~G--~ir~iGvSn~-~~ 162 (343)
+ +-+.++..|.|. +.+|+-... . . ..-.++.+.++++.= .+.-||+... ++
T Consensus 180 ~-~a~~l~~~Gad~---i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~ 255 (289)
T cd02810 180 E-LAKAAERAGADG---LTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSG 255 (289)
T ss_pred H-HHHHHHHcCCCE---EEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCH
Confidence 4 334567778554 455532100 0 0 011355566665543 5666666663 45
Q ss_pred HHHHHHhcCCCeeEEee
Q 019303 163 STIRRAHAVHPITAVQL 179 (343)
Q Consensus 163 ~~l~~~~~~~~~~~~q~ 179 (343)
+++.+++... .+.+|+
T Consensus 256 ~da~~~l~~G-Ad~V~v 271 (289)
T cd02810 256 EDVLEMLMAG-ASAVQV 271 (289)
T ss_pred HHHHHHHHcC-ccHheE
Confidence 6666655532 455544
No 122
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=41.37 E-value=3.1e+02 Score=25.86 Aligned_cols=151 Identities=9% Similarity=0.031 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCC---cHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGPH---TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEA 112 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g---~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 112 (343)
+.++..+.+..+.+.|++.|=.- .++.. +..+.+ +++++.--+++-|.-=.. ..++.+...+ +-+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i-~~vR~~~G~~~~l~vDan---------~~~~~~~A~~-~~~ 210 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKAC-LAVREAVGPDMRLMHDGA---------HWYSRADALR-LGR 210 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHH-HHHHHHhCCCCeEEEECC---------CCcCHHHHHH-HHH
Confidence 45667778888899999988552 22210 011212 344432122333322111 2345444332 333
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccE-EeCCCCc-HHHHHHHhcCCCeeEEeeecccccc-chh
Q 019303 113 SLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKY-IGLSEAS-ASTIRRAHAVHPITAVQLEWSLWSR-DVE 189 (343)
Q Consensus 113 sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~-iGvSn~~-~~~l~~~~~~~~~~~~q~~~n~~~~-~~~ 189 (343)
.|+.+ ++.++-.|-+ .. -++.+.+|+++-.|.- .|=+-++ ..+++++++...++++|+..+..-. ..-
T Consensus 211 ~l~~~-----~l~~iEeP~~---~~-d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~ 281 (368)
T cd03329 211 ALEEL-----GFFWYEDPLR---EA-SISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGA 281 (368)
T ss_pred Hhhhc-----CCCeEeCCCC---ch-hHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHH
Confidence 34444 3444444432 22 3477778888765542 3444467 8888888888888999997776432 123
Q ss_pred hcchHHHHHcCCeEEecc
Q 019303 190 AEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 190 ~~l~~~~~~~gi~v~a~s 207 (343)
..+...|+++||.++..+
T Consensus 282 ~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 282 MKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHHcCCEEEEEC
Confidence 578999999999987643
No 123
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=40.79 E-value=2.8e+02 Score=25.12 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=38.8
Q ss_pred HHHHHHhCCccEEe--CCCCcHHHHHHHhcC-CCeeEEeeeccccccchhhcchHHHHHcCCeEEecccc
Q 019303 143 LKKLVEEGKIKYIG--LSEASASTIRRAHAV-HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 143 l~~l~~~G~ir~iG--vSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl 209 (343)
|.+..++|+.- +| +..-++...+.+... ..+.++=.++++++......++..++..|+..+..-|-
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~ 77 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVE 77 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCC
Confidence 44555557753 33 233344433333222 34455566888888765567888888888887776653
No 124
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=40.77 E-value=62 Score=31.78 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=42.8
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCC-CCcHHHHHHHhcCCCeeEEeeecc
Q 019303 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEWS 182 (343)
Q Consensus 114 L~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~n 182 (343)
...+|.|++=+++...-....+.+.+ +.+.+... ++.+||- |-+++.+.++.+...++++|++-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a-~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQA-QEIIAAAP---LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHH-HHHHHhCC---CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 45688999888643321222344433 33322222 8889986 788999999888889999999654
No 125
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=40.75 E-value=3.5e+02 Score=26.22 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHHcCCCe-EeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeeccccc------CCCCCCCCCCHHHHHH
Q 019303 36 PESDMIALIHHAINSGITL-LDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISF------ADGKREIRGDPAYVRA 108 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~-~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~------~~~~~~~~~~~~~i~~ 108 (343)
+.+.-.+-++.|.+.|-.. .|-+. .| .-..+-+.+-+ ...+=|-|= ..+. .......+.+++.+.+
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-gg---dl~~iR~~il~--~s~vpvGTV-PiYqa~~~~~~k~~~~~~mt~d~~~~ 147 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLST-GG---DLDEIRRAIIE--ASPVPVGTV-PIYQAAVEAARKYGSVVDMTEDDLFD 147 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHHH--cCCCCCcCh-hHHHHHHHHHhcCCChhhCCHHHHHH
Confidence 4455556689999999764 45443 34 23333333321 111111111 1000 0011224678888888
Q ss_pred HHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCCCeeEEeeeccccccch
Q 019303 109 ACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDV 188 (343)
Q Consensus 109 ~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~ 188 (343)
.+++-.+ |=+|.+-+|.-- +.+.++.++++|+ ..|+-+-...-+...+... ..=|++...+
T Consensus 148 ~ie~qa~----~GVDfmTiHcGi-------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n------~~ENPlye~f 208 (431)
T PRK13352 148 VIEKQAK----DGVDFMTIHCGV-------TRETLERLKKSGR--IMGIVSRGGSFLAAWMLHN------NKENPLYEHF 208 (431)
T ss_pred HHHHHHH----hCCCEEEEccch-------hHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHc------CCcCchHHHH
Confidence 8877765 458889999742 5778889999885 5666555544443333221 1235555443
Q ss_pred hhcchHHHHHcCCeEEeccccccccC
Q 019303 189 EAEIVPTCRELGIGIVAYSPLGRGFF 214 (343)
Q Consensus 189 ~~~l~~~~~~~gi~v~a~spl~~G~l 214 (343)
+.+++.|+++++.+ +|+.|+-
T Consensus 209 -D~lLeI~~~yDVtl----SLGDglR 229 (431)
T PRK13352 209 -DYLLEILKEYDVTL----SLGDGLR 229 (431)
T ss_pred -HHHHHHHHHhCeee----eccCCcC
Confidence 58999999999997 4666653
No 126
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=40.40 E-value=2.5e+02 Score=25.06 Aligned_cols=65 Identities=9% Similarity=-0.039 Sum_probs=38.3
Q ss_pred HHHHHhCCccEEeC--CCCcHHHHHHHhcC--CCeeEEeeeccccccchhhcchHHHHHcCCeEEeccccc
Q 019303 144 KKLVEEGKIKYIGL--SEASASTIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLG 210 (343)
Q Consensus 144 ~~l~~~G~ir~iGv--Sn~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~ 210 (343)
.+-.++|+. .+|+ +.-++...+ ++.. ..+.++=.++++++...-..++..++..|+..+..-|-.
T Consensus 4 k~~l~~g~~-~~G~~~~~~sp~~~e-~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 4 RQDLLARET-LIGCWSALGNPITTE-VLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HHHHHcCCc-eEEEEEcCCCcHHHH-HHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 334445664 3443 333444433 3333 345555668888877545678888888888887766553
No 127
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=40.37 E-value=2.6e+02 Score=24.72 Aligned_cols=87 Identities=10% Similarity=0.037 Sum_probs=47.8
Q ss_pred HHHcCCCcccEEEeecCCCCCC-HHHHHHHHHHHHHhCCccEEeCCC-CcHHHHHHHhcCCCeeEEeeeccccccc-hhh
Q 019303 114 LKRLDIDCIDLYYQHRIDTRVP-IEVTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQLEWSLWSRD-VEA 190 (343)
Q Consensus 114 L~~L~~d~iDl~~lH~p~~~~~-~~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~ 190 (343)
+..+| +|-+.+|..+.... -.--|+.+.++.+.-.+.-|.-.. .+.+++.++.+....+.+.+---+.... ...
T Consensus 162 ~~~~g---~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~ 238 (253)
T PRK02083 162 VEELG---AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIG 238 (253)
T ss_pred HHHcC---CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHH
Confidence 35556 55667766443211 011266666676665566665443 4567787777654555554422221111 125
Q ss_pred cchHHHHHcCCeE
Q 019303 191 EIVPTCRELGIGI 203 (343)
Q Consensus 191 ~l~~~~~~~gi~v 203 (343)
++.++|++.||.+
T Consensus 239 ~~~~~~~~~~~~~ 251 (253)
T PRK02083 239 ELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHCCCcc
Confidence 7888999888864
No 128
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=40.10 E-value=2e+02 Score=27.24 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQH 128 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH 128 (343)
.-+.+.+.+.++..+ +|+.+++.+|.+.
T Consensus 162 gqt~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 162 NQTLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 346777777776664 5888888887765
No 129
>PLN02591 tryptophan synthase
Probab=39.95 E-value=2.8e+02 Score=24.85 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=38.7
Q ss_pred cccEEEeecC--CCCCCHHHHHHHHHHHHHhCCccEEeCCCCc-HHHHHHHhcCC-CeeEEeeeccccccchhhcchHHH
Q 019303 121 CIDLYYQHRI--DTRVPIEVTIGELKKLVEEGKIKYIGLSEAS-ASTIRRAHAVH-PITAVQLEWSLWSRDVEAEIVPTC 196 (343)
Q Consensus 121 ~iDl~~lH~p--~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~-~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~l~~~~ 196 (343)
.+|++-|--| |+-.+-.-+.++-++..+.|. +-.. .+.+++..... .+-+++.-||++.+--.+..++.|
T Consensus 29 Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~------~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~ 102 (250)
T PLN02591 29 GADVIELGVPYSDPLADGPVIQAAATRALEKGT------TLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATI 102 (250)
T ss_pred CCCEEEECCCCCCCcccCHHHHHHHHHHHHcCC------CHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHH
Confidence 4677777666 333333344555555555543 1111 12222222221 123577778876653345777778
Q ss_pred HHcCCe
Q 019303 197 RELGIG 202 (343)
Q Consensus 197 ~~~gi~ 202 (343)
++.|+.
T Consensus 103 ~~aGv~ 108 (250)
T PLN02591 103 KEAGVH 108 (250)
T ss_pred HHcCCC
Confidence 877763
No 130
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=39.91 E-value=2.8e+02 Score=24.81 Aligned_cols=157 Identities=17% Similarity=0.110 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCC-----------CCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCH
Q 019303 35 KPESDMIALIHHAINSGITLLDTSDI-----------YGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDP 103 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~-----------Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~ 103 (343)
.+.++..++++...+.||..++.+.. |..-..++.+.+..+..++.++.+..- +. ....
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~--~~--------~~~~ 88 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLL--PG--------IGTV 88 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEec--CC--------ccCH
Confidence 36788889999999999999999721 211124455554444333334332221 10 1122
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeC---CCCcHHHHHHHhcC---CCeeEE
Q 019303 104 AYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGL---SEASASTIRRAHAV---HPITAV 177 (343)
Q Consensus 104 ~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGv---Sn~~~~~l~~~~~~---~~~~~~ 177 (343)
+.++..++ .|+|.+-++. +..+...+.+.++.+++.|.--.+.+ +.++++.+.++.+. ...+.+
T Consensus 89 ----~~i~~a~~-~g~~~iri~~-----~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i 158 (263)
T cd07943 89 ----DDLKMAAD-LGVDVVRVAT-----HCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCV 158 (263)
T ss_pred ----HHHHHHHH-cCCCEEEEEe-----chhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEE
Confidence 33444443 3666555432 12234567778888888887555544 22455554433222 233433
Q ss_pred eeeccc--cccchhhcchHHHHHc----CCeEEecccccc
Q 019303 178 QLEWSL--WSRDVEAEIVPTCREL----GIGIVAYSPLGR 211 (343)
Q Consensus 178 q~~~n~--~~~~~~~~l~~~~~~~----gi~v~a~spl~~ 211 (343)
.+.=+. +.+..-.+++..++++ -+++..+.-++.
T Consensus 159 ~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~Gl 198 (263)
T cd07943 159 YVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGL 198 (263)
T ss_pred EEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcch
Confidence 332222 2222123566666554 234444444443
No 131
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=39.77 E-value=1.1e+02 Score=25.13 Aligned_cols=75 Identities=12% Similarity=0.082 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHH
Q 019303 35 KPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASL 114 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 114 (343)
..++...-.+++|-+.||.+|=.|..||. +-..+-+.+.. . =+++++|--.....+ ....+.+.+++-|
T Consensus 11 NT~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lemveg-~-lkvVvVthh~Gf~e~-------g~~e~~~E~~~~L 79 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVASSTGY--TALKALEMVEG-D-LKVVVVTHHAGFEEK-------GTQEMDEEVRKEL 79 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHhccc-C-ceEEEEEeecccccC-------CceecCHHHHHHH
Confidence 35566666778888999999999999985 44434444432 1 346655553322111 2233556688888
Q ss_pred HHcCCC
Q 019303 115 KRLDID 120 (343)
Q Consensus 115 ~~L~~d 120 (343)
+..|.+
T Consensus 80 ~erGa~ 85 (186)
T COG1751 80 KERGAK 85 (186)
T ss_pred HHcCce
Confidence 888853
No 132
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=39.72 E-value=1.7e+02 Score=28.03 Aligned_cols=61 Identities=11% Similarity=0.006 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeec-CCCC-----------C-CHH---HHH-HHHHHHHHhCCccEEeCCCCcH
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHR-IDTR-----------V-PIE---VTI-GELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~-p~~~-----------~-~~~---~~~-~~l~~l~~~G~ir~iGvSn~~~ 162 (343)
.-+.+.+++.++..++ |+.++|.+|.+.- |... . +.+ +.+ .+.+.|.+.|.. .+++|||.-
T Consensus 173 gqt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 250 (390)
T PRK06582 173 GQTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYF-RYEISNYAK 250 (390)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc-eeeceeeeC
Confidence 4578888888888886 8999999997753 3110 0 111 222 234445556664 478888753
No 133
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=39.53 E-value=2.8e+02 Score=24.81 Aligned_cols=104 Identities=14% Similarity=0.007 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCCCeeEEe
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR-VPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q 178 (343)
..+.+...+-.+-..+-++++.|=|=.+..+..- .+..+++++.++|.++|.+-. =+++-++...+++.+. .+++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vl-pyc~dd~~~ar~l~~~-G~~~vm 149 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVL-PYCTDDPVLAKRLEDA-GCAAVM 149 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHc-CCCEeC
Confidence 4577777777888888889999888777766543 467899999999999998644 2455566666665554 344443
Q ss_pred eeccccccc---hhhcchHHHHH-cCCeEEe
Q 019303 179 LEWSLWSRD---VEAEIVPTCRE-LGIGIVA 205 (343)
Q Consensus 179 ~~~n~~~~~---~~~~l~~~~~~-~gi~v~a 205 (343)
.-=++.-.. ...+++...++ .++.|++
T Consensus 150 Plg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~ 180 (248)
T cd04728 150 PLGSPIGSGQGLLNPYNLRIIIERADVPVIV 180 (248)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhCCCcEEE
Confidence 312222211 01345555555 4677765
No 134
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=39.50 E-value=1.4e+02 Score=26.26 Aligned_cols=70 Identities=14% Similarity=0.087 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHHHcCC--------------------------CcccEEEeecCCCCCCH---HHHHHHHHHHHHhC
Q 019303 100 RGDPAYVRAACEASLKRLDI--------------------------DCIDLYYQHRIDTRVPI---EVTIGELKKLVEEG 150 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~--------------------------d~iDl~~lH~p~~~~~~---~~~~~~l~~l~~~G 150 (343)
+.+...+++.+++.-++|+. ...+++.+..|....++ ....+.+.+++.+|
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC
Confidence 45667777888888888773 23455555555444443 46778889999999
Q ss_pred CccEEeCCCCcHHHHHHHhcC
Q 019303 151 KIKYIGLSEASASTIRRAHAV 171 (343)
Q Consensus 151 ~ir~iGvSn~~~~~l~~~~~~ 171 (343)
+ .+=+|+|..+.++.+++.
T Consensus 184 r--~viFSSH~m~EvealCDr 202 (245)
T COG4555 184 R--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred c--EEEEecccHHHHHHhhhe
Confidence 8 788999999999888754
No 135
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=39.41 E-value=1.5e+02 Score=25.94 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCC-CCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYG-PHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASL 114 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 114 (343)
++++..++.+.+.+.|..|+=|+..|+ .|.+.+.+....+. -+.++-|-.=.|. .+.+...+-++.--
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~-~~~~~~IKasGGI----------rt~~~a~~~i~aGA 202 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRET-VGPRVGVKASGGI----------RTLEDALAMIEAGA 202 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH-hCCCceEEeeCCc----------CCHHHHHHHHHcCc
Confidence 677788999999999999999999985 45666665444333 2233322221222 25667777777666
Q ss_pred HHcCCCc
Q 019303 115 KRLDIDC 121 (343)
Q Consensus 115 ~~L~~d~ 121 (343)
.|+||.+
T Consensus 203 ~riGtS~ 209 (221)
T PRK00507 203 TRLGTSA 209 (221)
T ss_pred ceEccCc
Confidence 7777654
No 136
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.29 E-value=3e+02 Score=26.32 Aligned_cols=88 Identities=11% Similarity=0.148 Sum_probs=58.0
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHHhCC----ccEEeCC--CCcHHHHHHH---hcCC------CeeEE
Q 019303 124 LYYQHRIDTR-----------VPIEVTIGELKKLVEEGK----IKYIGLS--EASASTIRRA---HAVH------PITAV 177 (343)
Q Consensus 124 l~~lH~p~~~-----------~~~~~~~~~l~~l~~~G~----ir~iGvS--n~~~~~l~~~---~~~~------~~~~~ 177 (343)
.+.||.|+.. -+++++++++.+..++.. +-|+=+. |-+.++.+++ +... +..++
T Consensus 231 AiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 231 AISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 3789998542 357889999988865433 2333222 4455555544 4434 56899
Q ss_pred eeeccccccc----h-h---hcchHHHHHcCCeEEecccccc
Q 019303 178 QLEWSLWSRD----V-E---AEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 178 q~~~n~~~~~----~-~---~~l~~~~~~~gi~v~a~spl~~ 211 (343)
-++||+.... + . ....+.++++||.+......+.
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 9999996432 1 1 3567778899999999887764
No 137
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.96 E-value=1.5e+02 Score=28.83 Aligned_cols=109 Identities=13% Similarity=0.118 Sum_probs=56.8
Q ss_pred CcCCCCCCcHHHHHHHHhhc----CCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCC-CcccEEEeecCC
Q 019303 57 TSDIYGPHTNEILLGKALKG----GMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDI-DCIDLYYQHRID 131 (343)
Q Consensus 57 TA~~Yg~g~sE~~lG~al~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~-d~iDl~~lH~p~ 131 (343)
..-.|| .|+.|-+++++ .+.+=++|.|-+-... --+.+...+++.-++... ..+.++.++.|.
T Consensus 63 ~d~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~i---------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpg 130 (435)
T cd01974 63 DAAVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEV---------IGDDLNAFIKNAKNKGSIPADFPVPFANTPS 130 (435)
T ss_pred CceEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCchHhh---------hhccHHHHHHHHHHhccCCCCCeEEEecCCC
Confidence 335777 56777777765 2344467777654321 122333333333333311 147899999887
Q ss_pred CCCCH----HHHHHHHHH-HHH-------hCCccEEe-CCCC-c-HHHHHHHhcCCCeeEE
Q 019303 132 TRVPI----EVTIGELKK-LVE-------EGKIKYIG-LSEA-S-ASTIRRAHAVHPITAV 177 (343)
Q Consensus 132 ~~~~~----~~~~~~l~~-l~~-------~G~ir~iG-vSn~-~-~~~l~~~~~~~~~~~~ 177 (343)
..... +.++++|.+ +.. .++|.-|| ..+. + .+.++++++...+.++
T Consensus 131 f~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 131 FVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred CccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 65332 234444432 222 23466665 2222 2 5678887776555554
No 138
>PRK05588 histidinol-phosphatase; Provisional
Probab=38.86 E-value=1.2e+02 Score=26.95 Aligned_cols=78 Identities=9% Similarity=0.206 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCCeEeCcCCCCCC---------cHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHH
Q 019303 39 DMIALIHHAINSGITLLDTSDIYGPH---------TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAA 109 (343)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DTA~~Yg~g---------~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 109 (343)
...+.+++|.+.|+..+ .+++.... .-+..+ +.+++.+..+|.+.--++.. ++ ....
T Consensus 17 ~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~~~~I~~GiE~~~~-----------~~-~~~~ 82 (255)
T PRK05588 17 KIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYRNNKLLLGIELGME-----------KD-LIEE 82 (255)
T ss_pred CHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHhcCCcceEEEeccc-----------CC-CHHH
Confidence 36689999999999998 77663110 011222 11222222344444444322 22 2456
Q ss_pred HHHHHHHcCCCcccEEEeecCC
Q 019303 110 CEASLKRLDIDCIDLYYQHRID 131 (343)
Q Consensus 110 ~~~sL~~L~~d~iDl~~lH~p~ 131 (343)
+++.|++...||+ +..+|+.+
T Consensus 83 ~~~~l~~~~~D~v-igSvH~~~ 103 (255)
T PRK05588 83 NKELINKYEFDYV-IGSIHLVD 103 (255)
T ss_pred HHHHHhhCCCCeE-EEeEEeeC
Confidence 7778888888887 78899854
No 139
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=38.69 E-value=1.6e+02 Score=25.80 Aligned_cols=80 Identities=15% Similarity=0.286 Sum_probs=48.8
Q ss_pred cHHHHHHHhcCCCeeEEe----eeccccccch---hhcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhhc
Q 019303 161 SASTIRRAHAVHPITAVQ----LEWSLWSRDV---EAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYL 233 (343)
Q Consensus 161 ~~~~l~~~~~~~~~~~~q----~~~n~~~~~~---~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~ 233 (343)
++.+++.+.+...+.++- .+||.+.... ...+.++++..|-.-+..-|+..|... +. ..
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~-~~----~v--------- 115 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWP-GT----AV--------- 115 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCC-Cc----cc---------
Confidence 455555555544433321 2455555321 257999999999999999999886432 11 01
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHhCC
Q 019303 234 PRFQAENLEHNKKLFERVNEIATRKGC 260 (343)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~a~~~g~ 260 (343)
..+.....+++++.+..++|+
T Consensus 116 ------r~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 116 ------RREDLVEALKALKPILDEYGI 136 (272)
T ss_pred ------chHHHHHHHHHhhHHHHHhCc
Confidence 123445667788888888886
No 140
>PHA02128 hypothetical protein
Probab=38.22 E-value=96 Score=23.70 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcC-----------------C-CeeEE---eeeccccccchhhcchHH
Q 019303 137 EVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV-----------------H-PITAV---QLEWSLWSRDVEAEIVPT 195 (343)
Q Consensus 137 ~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-----------------~-~~~~~---q~~~n~~~~~~~~~l~~~ 195 (343)
...+.--+++..+|-+|-|-+..-+-.+++.+... . .+.+. ..+|.+..|....++.+|
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 34677778889999999988876665555544322 1 22233 346777777666799999
Q ss_pred HHHcCCeEEec
Q 019303 196 CRELGIGIVAY 206 (343)
Q Consensus 196 ~~~~gi~v~a~ 206 (343)
+..+|+.++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 99999988754
No 141
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=37.93 E-value=48 Score=29.35 Aligned_cols=76 Identities=17% Similarity=0.323 Sum_probs=47.8
Q ss_pred CCCceeCcceeccccCCcCCCCCC--CHHHHHHHHHHH----HHcCCCeEeCcC--CCCCCcHHHHHHHHhhc-------
Q 019303 12 SQGLEVSAQGLGCMGMSAFYGPPK--PESDMIALIHHA----INSGITLLDTSD--IYGPHTNEILLGKALKG------- 76 (343)
Q Consensus 12 ~tg~~vs~lglG~~~~g~~~g~~~--~~~~~~~~l~~A----~~~Gi~~~DTA~--~Yg~g~sE~~lG~al~~------- 76 (343)
.+|+.++.+||.+-+-- .+|+.. ..+++.+++..| .+.|||.|-.|. .|-.-.+|+...+++..
T Consensus 65 etgv~ipSmClSaHRRf-PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRRF-PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HhCCCccchhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 58999999999875421 135441 345667777666 467999999985 44333455555555543
Q ss_pred CCCCCEEEEeec
Q 019303 77 GMRERVELATKF 88 (343)
Q Consensus 77 ~~R~~~~i~tK~ 88 (343)
..+..|.++--+
T Consensus 144 A~~aqV~lAvEi 155 (287)
T COG3623 144 AARAQVMLAVEI 155 (287)
T ss_pred HHhhccEEEeee
Confidence 156666666554
No 142
>PRK05406 LamB/YcsF family protein; Provisional
Probab=37.85 E-value=1.3e+02 Score=26.98 Aligned_cols=80 Identities=18% Similarity=0.321 Sum_probs=49.9
Q ss_pred eeccccCCcCCCCCCCHHHHHHHHHHH-HHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCC--CCC
Q 019303 21 GLGCMGMSAFYGPPKPESDMIALIHHA-INSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFAD--GKR 97 (343)
Q Consensus 21 glG~~~~g~~~g~~~~~~~~~~~l~~A-~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~--~~~ 97 (343)
+||.|.+| ++++...++..| +..|+ +.| ....+-+.++-.....|-|-..-++.... |..
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssANIACG~-------HAG---Dp~~M~~tv~lA~~~gV~IGAHPgypD~~gFGRR 75 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSANIACGF-------HAG---DPAVMRRTVRLAKENGVAIGAHPGYPDLEGFGRR 75 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCeEccCCCCCccCCCCCC
Confidence 78888875 556677777777 45554 667 45555666554345567666655543222 234
Q ss_pred CCCCCHHHHHHHHHHHHHHc
Q 019303 98 EIRGDPAYVRAACEASLKRL 117 (343)
Q Consensus 98 ~~~~~~~~i~~~~~~sL~~L 117 (343)
....+++.++..+...+..|
T Consensus 76 ~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 76 NMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 46778888887776666555
No 143
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=37.46 E-value=37 Score=26.56 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcC
Q 019303 35 KPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGG 77 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~ 77 (343)
.+.+.-.++|...++.|.+.-+.|.-||- ++..|..|+++.
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gI--s~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGV--AASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCc--CHHHHHHHHHHH
Confidence 36676778899999999999999999997 999999999884
No 144
>PRK13753 dihydropteroate synthase; Provisional
Probab=37.06 E-value=3.3e+02 Score=24.88 Aligned_cols=102 Identities=19% Similarity=0.158 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-eecCCCC-CCHH----HHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCCCe
Q 019303 101 GDPAYVRAACEASLKRLDIDCIDLYY-QHRIDTR-VPIE----VTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPI 174 (343)
Q Consensus 101 ~~~~~i~~~~~~sL~~L~~d~iDl~~-lH~p~~~-~~~~----~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 174 (343)
.+++.+.+..++.+ .-|.|-||+=- -.+|... .+.+ .+...++.+++.+. -|.|-++.++.++++++.. .
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aG-a 97 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRG-V 97 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcC-C
Confidence 46666666666644 55778888743 2335432 2222 24467778877653 4888999999999998763 2
Q ss_pred eEEeeeccccccchhhcchHHHHHcCCeEEeccccc
Q 019303 175 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLG 210 (343)
Q Consensus 175 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~ 210 (343)
+++ +..+-+. ...+.+.+.+.+++++.+...+
T Consensus 98 diI-NDVsg~~---d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 98 GYL-NDIQGFP---DPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred CEE-EeCCCCC---chHHHHHHHHcCCCEEEEecCC
Confidence 322 2223222 3578888999999988866543
No 145
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=36.50 E-value=2e+02 Score=25.51 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=29.9
Q ss_pred cHHHHHHHhcCCCeeEEeeeccc-------cccchhhcchHHHHHcCCeEEeccccccc
Q 019303 161 SASTIRRAHAVHPITAVQLEWSL-------WSRDVEAEIVPTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 161 ~~~~l~~~~~~~~~~~~q~~~n~-------~~~~~~~~l~~~~~~~gi~v~a~spl~~G 212 (343)
+.++.-+.++...++.+++..+. +.....+.+.+.++++||.+.++.|...+
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~ 72 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNG 72 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccC
Confidence 33443344444566666653211 11111246888899999999988876543
No 146
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=36.34 E-value=3.3e+02 Score=25.54 Aligned_cols=103 Identities=18% Similarity=0.185 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEee---------cCCCCCCHHHHHHHHHHHHHhCCccEEeCCC---CcHHHHH
Q 019303 99 IRGDPAYVRAACEASLKRLDIDCIDLYYQH---------RIDTRVPIEVTIGELKKLVEEGKIKYIGLSE---ASASTIR 166 (343)
Q Consensus 99 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH---------~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn---~~~~~l~ 166 (343)
..++.+.+.+ +-+.|.+.|+++|.+-+.- .+. ..+..+.++.+.+.. ...+...+.. ...+.++
T Consensus 20 ~~f~~~~~~~-i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~-~~~~~e~i~~~~~~~--~~~~~~~ll~pg~~~~~dl~ 95 (337)
T PRK08195 20 HQYTLEQVRA-IARALDAAGVPVIEVTHGDGLGGSSFNYGFG-AHTDEEYIEAAAEVV--KQAKIAALLLPGIGTVDDLK 95 (337)
T ss_pred CccCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCccccCCCC-CCCHHHHHHHHHHhC--CCCEEEEEeccCcccHHHHH
Confidence 4566666654 6666999999999885321 111 122233444443332 2344443322 2456777
Q ss_pred HHhcCCCeeEEeeeccccccchhhcchHHHHHcCCeEEec
Q 019303 167 RAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 206 (343)
Q Consensus 167 ~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 206 (343)
.+.+. .++.+.+..+.-....-.+.+++++++|..+..+
T Consensus 96 ~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 96 MAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 76654 3456555544433322357888999999877654
No 147
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=36.25 E-value=3.6e+02 Score=25.12 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCC--C-----cHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGP--H-----TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRA 108 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~--g-----~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 108 (343)
+.++..+.++.+++.|++.|=.--..+. + ...+.+ +++++.-.+++-|.-=.. ..++.+...+
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~g~~~~l~vDan---------~~~~~~~A~~ 189 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAVGYDVDLMLDCY---------MSWNLNYAIK 189 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHhCCCCcEEEECC---------CCCCHHHHHH
Confidence 4566667778888999998754321111 1 112222 333332122332221111 2345544332
Q ss_pred HHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCcc-EEeCCCCcHHHHHHHhcCCCeeEEeeecccccc-
Q 019303 109 ACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR- 186 (343)
Q Consensus 109 ~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~- 186 (343)
+-+.|+. .++.++-.|-+. +.++.+.+|+++..|. ..|=|.++...++++++...++++|+..+..-.
T Consensus 190 -~~~~l~~-----~~~~~iEeP~~~----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGi 259 (341)
T cd03327 190 -MARALEK-----YELRWIEEPLIP----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGI 259 (341)
T ss_pred -HHHHhhh-----cCCccccCCCCc----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCH
Confidence 2233333 355555555432 2467788888887776 667777899999999988888999987665432
Q ss_pred chhhcchHHHHHcCCeEEecc
Q 019303 187 DVEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 187 ~~~~~l~~~~~~~gi~v~a~s 207 (343)
..-..+...|+++|+.++.++
T Consensus 260 t~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 260 TELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHHcCCeecccc
Confidence 113588999999999987653
No 148
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=36.19 E-value=2.6e+02 Score=25.74 Aligned_cols=73 Identities=11% Similarity=0.031 Sum_probs=50.8
Q ss_pred HHHHHHHHhCCc-cEEeCCCCcHHHHHHHhcCCCeeEEeeeccccccc-hhhcchHHHHHcCCeEEecccccccc
Q 019303 141 GELKKLVEEGKI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGF 213 (343)
Q Consensus 141 ~~l~~l~~~G~i-r~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G~ 213 (343)
+.+..+.++-.+ -..|=|-++.+.+.+++.....+++|+.....-.- .-..+.+.|+.+||.++..+.+..|+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 556666665433 24566777888888888777778888876654321 12578999999999999877665543
No 149
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=36.17 E-value=2.2e+02 Score=26.86 Aligned_cols=101 Identities=10% Similarity=0.048 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCC--C-CCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCCCeeE
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDT--R-VPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITA 176 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~--~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~ 176 (343)
.++.+. +-.+-+.|.++|+++|++-..-.|.. . .+.+++++.+.. ...++..++. .....++.+++.. .+.
T Consensus 64 ~~s~e~-Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g-~~~ 137 (347)
T PLN02746 64 IVPTSV-KVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAG-AKE 137 (347)
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcC-cCE
Confidence 445444 45577779999999999874444421 1 233455555543 2334555554 4778888887752 233
Q ss_pred Eeeeccc--c------ccchh------hcchHHHHHcCCeEEec
Q 019303 177 VQLEWSL--W------SRDVE------AEIVPTCRELGIGIVAY 206 (343)
Q Consensus 177 ~q~~~n~--~------~~~~~------~~l~~~~~~~gi~v~a~ 206 (343)
+.+-++. . ....+ .+++++++++|+.+.++
T Consensus 138 v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 138 VAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 3332221 1 11111 36889999999988543
No 150
>PRK12569 hypothetical protein; Provisional
Probab=36.05 E-value=1.5e+02 Score=26.52 Aligned_cols=80 Identities=20% Similarity=0.318 Sum_probs=51.5
Q ss_pred eeccccCCcCCCCCCC--HHHHHHHHHHH-HHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCC--C
Q 019303 21 GLGCMGMSAFYGPPKP--ESDMIALIHHA-INSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFAD--G 95 (343)
Q Consensus 21 glG~~~~g~~~g~~~~--~~~~~~~l~~A-~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~--~ 95 (343)
+||.|.+| + +++...+|..| +..|+ +.| ....+-+.++-.....|-|-..-++.... |
T Consensus 14 sfG~~~~g-------~~~D~~lmp~ItsaNIACG~-------HAG---Dp~~M~~tv~lA~~~~V~IGAHPsyPD~~gFG 76 (245)
T PRK12569 14 GFGPWRIG-------DGVDEALMPLISSANIATGF-------HAG---DPNIMRRTVELAKAHGVGIGAHPGFRDLVGFG 76 (245)
T ss_pred CCCCcCCC-------CccHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCEeccCCCCCcCCCCC
Confidence 78888875 4 67777888777 45554 677 45566666654455667776655543221 2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHc
Q 019303 96 KREIRGDPAYVRAACEASLKRL 117 (343)
Q Consensus 96 ~~~~~~~~~~i~~~~~~sL~~L 117 (343)
+.....+++.++..+...+..|
T Consensus 77 Rr~m~~s~~el~~~v~yQigaL 98 (245)
T PRK12569 77 RRHINASPQELVNDVLYQLGAL 98 (245)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
Confidence 3446778888888776666665
No 151
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=36.03 E-value=1.7e+02 Score=26.32 Aligned_cols=90 Identities=10% Similarity=0.056 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHH----HHHHh-cC-CCee
Q 019303 102 DPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASAST----IRRAH-AV-HPIT 175 (343)
Q Consensus 102 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~----l~~~~-~~-~~~~ 175 (343)
+.+...+ +-+.|.+-|.|.|-|=+-+. |+-.+-.-+-++..+..+.|. +.+. ++++. .. ..+-
T Consensus 22 ~~~~~~~-~~~~l~~~GaD~iEiGiPfS-DP~ADGpvIq~A~~rAL~~G~---------~~~~~~~~~~~ir~~~~~~pi 90 (259)
T PF00290_consen 22 DLETTLE-ILKALEEAGADIIEIGIPFS-DPVADGPVIQKASQRALKNGF---------TLEKIFELVKEIRKKEPDIPI 90 (259)
T ss_dssp SHHHHHH-HHHHHHHTTBSSEEEE--SS-SCTTSSHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHCTSSEE
T ss_pred CHHHHHH-HHHHHHHcCCCEEEECCCCC-CCCCCCHHHHHHHHHHHHCCC---------CHHHHHHHHHHHhccCCCCCE
Confidence 4444444 33344555654444433332 333333344555555555543 2222 22222 11 2344
Q ss_pred EEeeeccccccchhhcchHHHHHcCCe
Q 019303 176 AVQLEWSLWSRDVEAEIVPTCRELGIG 202 (343)
Q Consensus 176 ~~q~~~n~~~~~~~~~l~~~~~~~gi~ 202 (343)
+++.-||++.+.-.+..+..|++.|+.
T Consensus 91 vlm~Y~N~i~~~G~e~F~~~~~~aGvd 117 (259)
T PF00290_consen 91 VLMTYYNPIFQYGIERFFKEAKEAGVD 117 (259)
T ss_dssp EEEE-HHHHHHH-HHHHHHHHHHHTEE
T ss_pred EEEeeccHHhccchHHHHHHHHHcCCC
Confidence 566666665543234566666666654
No 152
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=35.76 E-value=63 Score=19.28 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHH
Q 019303 247 LFERVNEIATRKGCTPSQLAL 267 (343)
Q Consensus 247 ~~~~l~~~a~~~g~s~aqlal 267 (343)
..+.+.++|++.|.|.+++.-
T Consensus 10 ~~~~l~~~a~~~g~s~s~~ir 30 (39)
T PF01402_consen 10 LYERLDELAKELGRSRSELIR 30 (39)
T ss_dssp HHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHH
Confidence 456899999999999988653
No 153
>TIGR00035 asp_race aspartate racemase.
Probab=35.70 E-value=1.5e+02 Score=25.90 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC------------CCHHHHHHHHHHHHHhCCccEEeCCCCcHHH
Q 019303 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR------------VPIEVTIGELKKLVEEGKIKYIGLSEASAST 164 (343)
Q Consensus 101 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~------------~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~ 164 (343)
.+.+..++-++.+-.+.+-++++++.+++|+.. .....+.+.++.|.+.| +..|-++..++..
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 356677777777778899999999999998531 11234566666666654 7888887766554
No 154
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=35.69 E-value=3.3e+02 Score=24.54 Aligned_cols=52 Identities=12% Similarity=-0.079 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHHc------CCCcccEEEeecCCCCC-CHHHHHHHHHHHHHhCC
Q 019303 100 RGDPAYVRAACEASLKRL------DIDCIDLYYQHRIDTRV-PIEVTIGELKKLVEEGK 151 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L------~~d~iDl~~lH~p~~~~-~~~~~~~~l~~l~~~G~ 151 (343)
..+.+...+-.+-..+-+ +++.|=|=.+..+..-. +..|++++-+.|.++|-
T Consensus 80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF 138 (267)
T CHL00162 80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGF 138 (267)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCC
Confidence 345555555555555555 56766665555544332 45689999999999986
No 155
>PRK12928 lipoyl synthase; Provisional
Probab=35.43 E-value=3.2e+02 Score=24.98 Aligned_cols=161 Identities=11% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCC---CCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHH
Q 019303 35 KPESDMIALIHHAINSGITLLDTSDIYG---PHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 111 (343)
.+.++..+.++.+.+.|++++-...... ....-..+-+.++......-.+.-++. +++.+.+ ..
T Consensus 87 ~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~l------------tp~~~~~-~~ 153 (290)
T PRK12928 87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVL------------TPDFWGG-QR 153 (290)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEe------------ccccccC-CH
Q ss_pred HHHHHcCCCcccEEEe---------ecCCCCCCHHHHHHHHHHHHHhC---CccE---EeCCCCcHHHHHHHhcC---CC
Q 019303 112 ASLKRLDIDCIDLYYQ---------HRIDTRVPIEVTIGELKKLVEEG---KIKY---IGLSEASASTIRRAHAV---HP 173 (343)
Q Consensus 112 ~sL~~L~~d~iDl~~l---------H~p~~~~~~~~~~~~l~~l~~~G---~ir~---iGvSn~~~~~l~~~~~~---~~ 173 (343)
+.|++|.-...+++.. ....+....++.++.++.+++.| .++. +|+ .-+.+++.+.+.. ..
T Consensus 154 e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~ 232 (290)
T PRK12928 154 ERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVG 232 (290)
T ss_pred HHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcC
Q ss_pred eeEEee-eccccccchh-----------hcchHHHHHcCCeEEecccc
Q 019303 174 ITAVQL-EWSLWSRDVE-----------AEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 174 ~~~~q~-~~n~~~~~~~-----------~~l~~~~~~~gi~v~a~spl 209 (343)
++.+.+ +|..-.+... +.+..++.+.|...++.+||
T Consensus 233 ~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 233 CDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred CCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
No 156
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=35.43 E-value=3.6e+02 Score=24.80 Aligned_cols=93 Identities=11% Similarity=0.001 Sum_probs=45.0
Q ss_pred CCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCC----------CHHHHHHHHHHHHHh
Q 019303 80 ERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRV----------PIEVTIGELKKLVEE 149 (343)
Q Consensus 80 ~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~----------~~~~~~~~l~~l~~~ 149 (343)
+++.|..|+...... ....+.+... .+-+-|+.+|+|+|+ +|...... .....++.+..+++.
T Consensus 207 ~d~~i~vris~~~~~---~~g~~~~e~~-~la~~l~~~G~d~i~---vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 279 (327)
T cd02803 207 PDFPVGVRLSADDFV---PGGLTLEEAI-EIAKALEEAGVDALH---VSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA 279 (327)
T ss_pred CCceEEEEechhccC---CCCCCHHHHH-HHHHHHHHcCCCEEE---eCCCCCcccccccCCCCCCcchhHHHHHHHHHH
Confidence 467778887653210 0123444443 344455667755554 33322111 012234445555555
Q ss_pred CCccEEeCCCC-cHHHHHHHhcCCCeeEEee
Q 019303 150 GKIKYIGLSEA-SASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 150 G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~ 179 (343)
=.+--++..+. +++.++++++....+.+++
T Consensus 280 ~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 280 VKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 45555555554 3666666666544555543
No 157
>COG1679 Predicted aconitase [General function prediction only]
Probab=35.35 E-value=4.1e+02 Score=25.42 Aligned_cols=102 Identities=16% Similarity=0.078 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCC---CCC--CCCCCHHHHHHHHHHHHHH
Q 019303 42 ALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFAD---GKR--EIRGDPAYVRAACEASLKR 116 (343)
Q Consensus 42 ~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~---~~~--~~~~~~~~i~~~~~~sL~~ 116 (343)
-++-.+...||-+|.-+.. .+-.+-+.+|.++....---+|.+..+.+.+.+ .+. ....+ ++.+.++.++
T Consensus 208 y~~G~~~~d~IP~~~~~~~-p~~d~lKalgAA~atsgavam~HvegvTPE~~~~~~~d~~e~i~i~----~~d~~da~~~ 282 (403)
T COG1679 208 YLAGEAAGDGIPYFRLALF-PSEDELKALGAAMATSGAVAMYHVEGVTPEARALAFGDKAEKIEIE----REDIDDAWER 282 (403)
T ss_pred HHHHHhccCCCCeeccCCC-CCHHHHHHHHHHHhhcCceeEEEecCCCcccccccccccCceeeee----HHHHHHHHHH
Confidence 3455667789999994443 333455889999987555557777777766531 111 11133 3445555555
Q ss_pred cCC--CcccEEEeecCCCCCCHHHHHHHHHHHHHhC
Q 019303 117 LDI--DCIDLYYQHRIDTRVPIEVTIGELKKLVEEG 150 (343)
Q Consensus 117 L~~--d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G 150 (343)
|.+ +-+|++.+-+|- .+.+|+.+.++.|+..+
T Consensus 283 l~~~~~epdli~iGcPH--aS~~E~~~la~~l~~r~ 316 (403)
T COG1679 283 LNTADGEPDLIALGCPH--ASLEELRRLAELLKGRK 316 (403)
T ss_pred hhcCCCCCCEEEeCCCC--CCHHHHHHHHHHHhccC
Confidence 543 478999999884 45777777777777766
No 158
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=35.06 E-value=92 Score=28.69 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCC----CCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhc-CCCeeE
Q 019303 102 DPAYVRAACEASLKRLDIDCIDLYYQHRIDTR----VPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHA-VHPITA 176 (343)
Q Consensus 102 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~----~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~-~~~~~~ 176 (343)
..+.+++.+.+-+++.|+|++=++.+-.-.+. .....++++|++..+++.-. .++..+-.... .....+
T Consensus 130 ~~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~~g~~f 203 (295)
T PF07994_consen 130 QVEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALEAGVPF 203 (295)
T ss_dssp HHHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHHCCCCe
Confidence 34678899999999999885444433322221 12335788888888876532 23333222111 122222
Q ss_pred EeeeccccccchhhcchHHHHHcCCeEEe---ccccccccCCCCCCCCCCCCchhhhhhccccchhhhHHHHHHHHHHHH
Q 019303 177 VQLEWSLWSRDVEAEIVPTCRELGIGIVA---YSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERVNE 253 (343)
Q Consensus 177 ~q~~~n~~~~~~~~~l~~~~~~~gi~v~a---~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 253 (343)
+ .+.+-.-.....+.+.++++|+.+.. -++++.+++ -=+-++.+
T Consensus 204 v--N~tP~~~a~~P~l~ela~~~gvpi~GdD~KT~lAAplv-------------------------------lDLirl~~ 250 (295)
T PF07994_consen 204 V--NGTPSNIADDPALVELAEEKGVPIAGDDGKTPLAAPLV-------------------------------LDLIRLAK 250 (295)
T ss_dssp E--E-SSSTTTTSHHHHHHHHHHTEEEEESSBS-HHHHHHH-------------------------------HHHHHHHH
T ss_pred E--eccCccccCCHHHHHHHHHcCCCeecchHhhhhhhHHH-------------------------------HHHHHHHH
Confidence 2 22222222134899999999999765 112222211 11336888
Q ss_pred HHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHH
Q 019303 254 IATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENC 289 (343)
Q Consensus 254 ~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l 289 (343)
+|.+.|....+-.++|.+..|. +=.|......+
T Consensus 251 la~r~g~~Gv~~~ls~ffK~P~---~~~g~~~~~~l 283 (295)
T PF07994_consen 251 LALRRGMGGVQEWLSFFFKSPM---VPPGPPQEHDL 283 (295)
T ss_dssp HHHHTTS-EEHHHHHHHBSS-T-----TTSTT--HH
T ss_pred HHHHcCCCChhHHHHHHhcCCC---ccCCCCCCCcH
Confidence 9999999888889999999985 22555555555
No 159
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=34.33 E-value=1e+02 Score=26.99 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCC
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGP 63 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~ 63 (343)
+.++..++++.|.+.|++-+=..++|-.
T Consensus 18 s~eesl~ml~~A~~qGvt~iVaTsHh~~ 45 (254)
T COG4464 18 SLEESLAMLREAVRQGVTKIVATSHHLH 45 (254)
T ss_pred cHHHHHHHHHHHHHcCceEEeecccccC
Confidence 7889999999999999998776666654
No 160
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=34.25 E-value=4.4e+02 Score=26.37 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=53.4
Q ss_pred HHHHHHHHhhcC----CCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC----HH
Q 019303 66 NEILLGKALKGG----MRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVP----IE 137 (343)
Q Consensus 66 sE~~lG~al~~~----~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~----~~ 137 (343)
+|+.|-+++++. +.+-++|.|-+. ++-|-..++...++++. .++++.++.|..... .+
T Consensus 69 ~~ekL~~aI~~~~~~~~P~~I~V~sTC~-------------seiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~~G~~ 134 (519)
T PRK02910 69 TAELLKDTLRRADERFQPDLIVVGPSCT-------------AELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKENWAAD 134 (519)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCcH-------------HHHhccCHHHHHHHhCC-CCCEEEEecCCcccccchHHH
Confidence 455566666542 333346666543 33333444444455554 367999999876543 22
Q ss_pred HHHHHHHH-HH-----------HhCCccEEeCCC------CcHHHHHHHhcCCCeeEEee
Q 019303 138 VTIGELKK-LV-----------EEGKIKYIGLSE------ASASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 138 ~~~~~l~~-l~-----------~~G~ir~iGvSn------~~~~~l~~~~~~~~~~~~q~ 179 (343)
.++.++.+ +. ..++|.-||.++ .+...++++++...+.++.+
T Consensus 135 ~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v 194 (519)
T PRK02910 135 ETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVV 194 (519)
T ss_pred HHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEE
Confidence 33333332 11 124588888865 23456777777655555543
No 161
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=34.11 E-value=72 Score=21.77 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=15.1
Q ss_pred HHHHHHHHhCCCHHHHH
Q 019303 250 RVNEIATRKGCTPSQLA 266 (343)
Q Consensus 250 ~l~~~a~~~g~s~aqla 266 (343)
.+.+||+++|++..+|-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68899999999998875
No 162
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=33.96 E-value=3.2e+02 Score=23.82 Aligned_cols=22 Identities=9% Similarity=0.318 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHcCCCeEeCc
Q 019303 37 ESDMIALIHHAINSGITLLDTS 58 (343)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DTA 58 (343)
.|.....++.|++.|+..|.+=
T Consensus 14 pENTl~Af~~A~~~G~d~iE~D 35 (237)
T cd08583 14 YTNSLDAFEHNYKKGYRVFEVD 35 (237)
T ss_pred CccHHHHHHHHHHhCCCEEEEE
Confidence 4677888999999999987653
No 163
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=33.95 E-value=4.2e+02 Score=25.12 Aligned_cols=92 Identities=11% Similarity=-0.052 Sum_probs=40.3
Q ss_pred EEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcH
Q 019303 83 ELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 83 ~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 162 (343)
+|..|+.............+.+.....+-+-|+..|+|+|++-.-++... .... ....+++++.=.+--+++..+++
T Consensus 227 ~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~-~~~~--~~~~~~ik~~~~~pv~~~G~~~~ 303 (362)
T PRK10605 227 RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG-EPYS--DAFREKVRARFHGVIIGAGAYTA 303 (362)
T ss_pred eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC-cccc--HHHHHHHHHHCCCCEEEeCCCCH
Confidence 47778765310000011234444223445556667877777653221111 1111 11112233221222333344567
Q ss_pred HHHHHHhcCCCeeEE
Q 019303 163 STIRRAHAVHPITAV 177 (343)
Q Consensus 163 ~~l~~~~~~~~~~~~ 177 (343)
+..+++++....|.+
T Consensus 304 ~~ae~~i~~G~~D~V 318 (362)
T PRK10605 304 EKAETLIGKGLIDAV 318 (362)
T ss_pred HHHHHHHHcCCCCEE
Confidence 777777766555544
No 164
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=33.91 E-value=3.9e+02 Score=25.52 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=37.9
Q ss_pred CcceeccccCCc----CCCCC-CCHHHHHHHHHHHHHcCCCeEeCcC----CCCCCcHH-----HHHHHHhhc
Q 019303 18 SAQGLGCMGMSA----FYGPP-KPESDMIALIHHAINSGITLLDTSD----IYGPHTNE-----ILLGKALKG 76 (343)
Q Consensus 18 s~lglG~~~~g~----~~g~~-~~~~~~~~~l~~A~~~Gi~~~DTA~----~Yg~g~sE-----~~lG~al~~ 76 (343)
.+.+||.|.+|. .||.. .+.....+.++.+-+.|+..+.-.. -|+.-.+| ..+.++|++
T Consensus 7 ~~f~~~~w~~~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~ 79 (382)
T TIGR02631 7 DRFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDE 79 (382)
T ss_pred CceEEEeeccCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHH
Confidence 467899998873 25554 2334567888999999999998652 24432222 246677765
No 165
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=33.91 E-value=93 Score=30.32 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=66.4
Q ss_pred CcHHHHHHHHhhc---CCCCCEEEEeecccccCCCC----------CCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecC
Q 019303 64 HTNEILLGKALKG---GMRERVELATKFGISFADGK----------REIRGDPAYVRAACEASLKRLDIDCIDLYYQHRI 130 (343)
Q Consensus 64 g~sE~~lG~al~~---~~R~~~~i~tK~~~~~~~~~----------~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p 130 (343)
|-=|.++..+-+. ..+.++++++-+|..-...+ .....+.. +.-+||.+.|+|..
T Consensus 148 GTyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~s-------rI~~Rl~t~y~d~~----- 215 (561)
T COG2987 148 GTYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDES-------RIDKRLRTGYLDEI----- 215 (561)
T ss_pred chHHHHHHHHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHH-------HHHHHHhcchhhhh-----
Confidence 4455555444333 26778899888875421100 00112222 23368889999952
Q ss_pred CCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcC-CCeeEE
Q 019303 131 DTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV-HPITAV 177 (343)
Q Consensus 131 ~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~~ 177 (343)
..+++|.++..++..++|+-.+||+-..-++.+.++++. ..+|++
T Consensus 216 --a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 216 --AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred --cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 456899999999999999999999999888888888776 344444
No 166
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=33.66 E-value=3.2e+02 Score=27.09 Aligned_cols=105 Identities=10% Similarity=0.039 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhC-CccEEeCCC----C--cHHHHHHHhcCCC
Q 019303 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEG-KIKYIGLSE----A--SASTIRRAHAVHP 173 (343)
Q Consensus 101 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G-~ir~iGvSn----~--~~~~l~~~~~~~~ 173 (343)
.+++.|.+.++...++.|+.++ .+...+...+.+.+.+.++++++.| .--.++++. . +.+.++.+.+. .
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~a-G 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRA-G 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHh-C
Confidence 4789999999998888886543 4444444445566778888888887 323344332 2 33444443332 2
Q ss_pred eeEEeeec--------cccccc----hhhcchHHHHHcCCeEEecccc
Q 019303 174 ITAVQLEW--------SLWSRD----VEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 174 ~~~~q~~~--------n~~~~~----~~~~l~~~~~~~gi~v~a~spl 209 (343)
+..+++-. ..+.+. ...+.+..|+++||.+.+.-.+
T Consensus 298 ~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 298 LVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred CcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 22222211 111111 1136778899999987654333
No 167
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=33.50 E-value=4.1e+02 Score=24.89 Aligned_cols=104 Identities=19% Similarity=0.199 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEe--------e-cCCCCCCHHHHHHHHHHHHHhCCccEEeCC-CCcHHHHHHH
Q 019303 99 IRGDPAYVRAACEASLKRLDIDCIDLYYQ--------H-RIDTRVPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRA 168 (343)
Q Consensus 99 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~l--------H-~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~ 168 (343)
..++.+.+. .+-+.|.+.|+++|.+-.. . .+.... ..+.++++.+....-++..+-+. ....+.++.+
T Consensus 19 ~~f~~~~~~-~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~-~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a 96 (333)
T TIGR03217 19 HQFTIEQVR-AIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHT-DLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAA 96 (333)
T ss_pred CcCCHHHHH-HHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCC-hHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHH
Confidence 355666664 4666699999999888521 1 121112 22333333333333333222111 1245677776
Q ss_pred hcCCCeeEEeeeccccccchhhcchHHHHHcCCeEEe
Q 019303 169 HAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 169 ~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a 205 (343)
.+. .++.+.+-.+.-.-..-.+.++++++.|..+..
T Consensus 97 ~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 97 YDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEE
Confidence 654 355665554443322235788888899877654
No 168
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=33.47 E-value=3.6e+02 Score=24.29 Aligned_cols=149 Identities=13% Similarity=0.060 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHH--HHHhhc-CCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHH
Q 019303 38 SDMIALIHHAINSGITLLDTSDIYGPHTNEILL--GKALKG-GMRERVELATKFGISFADGKREIRGDPAYVRAACEASL 114 (343)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~l--G~al~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 114 (343)
+...+.++..-+.|..+|..++.=+.+..+..+ +..|++ ..-+ . |..... .+.++..+...+...
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~-~-i~Hlt~---------r~~n~~~l~~~L~~~- 82 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIP-T-VPHLTC---------IGATREEIREILREY- 82 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCC-e-eEEeee---------cCCCHHHHHHHHHHH-
Confidence 445555566567789999998765543334333 333432 1111 1 111111 133666776666644
Q ss_pred HHcCCCcccEEEeecCCC-------CCCHHHHHHHHHHHHHhCCccEEeCCCCcH---------HHHHHHhcC----CCe
Q 019303 115 KRLDIDCIDLYYQHRIDT-------RVPIEVTIGELKKLVEEGKIKYIGLSEASA---------STIRRAHAV----HPI 174 (343)
Q Consensus 115 ~~L~~d~iDl~~lH~p~~-------~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~---------~~l~~~~~~----~~~ 174 (343)
..+|++. ++.|-...+ ...+....+-++-+++..---.||+..++. ++++.+... ..+
T Consensus 83 ~~~Gi~n--vL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f 160 (272)
T TIGR00676 83 RELGIRH--ILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADY 160 (272)
T ss_pred HHCCCCE--EEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 7788553 333432211 122233444444455542234777765421 233333222 446
Q ss_pred eEEeeeccccccchhhcchHHHHHcCCeE
Q 019303 175 TAVQLEWSLWSRDVEAEIVPTCRELGIGI 203 (343)
Q Consensus 175 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v 203 (343)
-+-|.-|+. ..-.++++.|++.||.+
T Consensus 161 ~iTQ~~fd~---~~~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 161 AITQLFFDN---DDYYRFVDRCRAAGIDV 186 (272)
T ss_pred EeeccccCH---HHHHHHHHHHHHcCCCC
Confidence 666776665 22357888999997664
No 169
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=33.18 E-value=2.7e+02 Score=25.73 Aligned_cols=107 Identities=14% Similarity=0.104 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHc
Q 019303 38 SDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRL 117 (343)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 117 (343)
+...++|+..-+.|+ .+|+|.. |++.+-.+++-. ...+|+|......-- ......+.+.+ +++. ++=
T Consensus 154 ~~G~~vv~~mn~lGm-iiDvSH~-----s~~~~~dv~~~s--~~PviaSHsn~ral~-~h~RNltD~~i-~~ia---~~G 220 (309)
T cd01301 154 PFGKELVREMNRLGI-IIDLSHL-----SERTFWDVLDIS--NAPVIASHSNARALC-DHPRNLTDAQL-KAIA---ETG 220 (309)
T ss_pred HHHHHHHHHHHHcCC-EEEcCCC-----CHHHHHHHHHhc--CCCEEEeccChHHhc-CCCCCCCHHHH-HHHH---HcC
Confidence 446789999999998 9999987 888888888653 345888876643210 01112333332 2222 222
Q ss_pred CCCcccEEEeec---CCCCCCHHHHHHHHHHHHHhCCccEEeCCC
Q 019303 118 DIDCIDLYYQHR---IDTRVPIEVTIGELKKLVEEGKIKYIGLSE 159 (343)
Q Consensus 118 ~~d~iDl~~lH~---p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn 159 (343)
| .|-+.+.-. .+....++++++.++.+.+..=+.+||+.+
T Consensus 221 G--vigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGs 263 (309)
T cd01301 221 G--VIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGS 263 (309)
T ss_pred C--EEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECc
Confidence 2 222222211 123467888999999988887789999876
No 170
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=33.15 E-value=1.6e+02 Score=29.54 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeecCCCC---CCHHHHHHHHHHHHHhCCccEE----eCCCCc--HHHHHHHhcCCCe
Q 019303 104 AYVRAACEASLKRLDIDCIDLYYQHRIDTR---VPIEVTIGELKKLVEEGKIKYI----GLSEAS--ASTIRRAHAVHPI 174 (343)
Q Consensus 104 ~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~---~~~~~~~~~l~~l~~~G~ir~i----GvSn~~--~~~l~~~~~~~~~ 174 (343)
+...+-|+..++..+-.+.+ -|-.-.. ..+-+.++-|.+++++|+||.+ |++|-. ...+....+..|=
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~v~GCd~~~~~~~yvt~~kelipr 436 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVVVVGCDGLRSGRHYVTLFKELIPR 436 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEEEeeCCCCCCCcccHHHHHHhccc
Confidence 55677788888888877766 2222111 1234567788899999999987 444421 1123333333333
Q ss_pred eEEeeeccccccchhhcchHHHHHcCCeE
Q 019303 175 TAVQLEWSLWSRDVEAEIVPTCRELGIGI 203 (343)
Q Consensus 175 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v 203 (343)
+++-+ +.......-..++.|...||+-
T Consensus 437 D~lVL--t~GCgk~~~~~~~vc~~lGIPp 463 (576)
T COG1151 437 DILVL--TLGCGKYRFNKADVGDILGIPR 463 (576)
T ss_pred ceEEE--ecccchhhhhhhccccccCCCc
Confidence 33322 2222222224458888888874
No 171
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=33.09 E-value=2.8e+02 Score=25.17 Aligned_cols=70 Identities=21% Similarity=0.166 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHHHcCC-----C---------------------cccEEEeecCCCC---CCHHHHHHHHHHHHHhC
Q 019303 100 RGDPAYVRAACEASLKRLDI-----D---------------------CIDLYYQHRIDTR---VPIEVTIGELKKLVEEG 150 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~-----d---------------------~iDl~~lH~p~~~---~~~~~~~~~l~~l~~~G 150 (343)
......+++.++.-|+||.+ + ..||+.|..|=.. ...+-.-++..+++++|
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 45678888899999999873 2 3344444444211 12234456788999999
Q ss_pred CccEEeCCCCcHHHHHHHhcC
Q 019303 151 KIKYIGLSEASASTIRRAHAV 171 (343)
Q Consensus 151 ~ir~iGvSn~~~~~l~~~~~~ 171 (343)
. .|=+|+|..++++++++.
T Consensus 181 a--tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 181 A--TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred C--EEEEecchHHHHHHHhhh
Confidence 8 788999999999998865
No 172
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=32.31 E-value=4e+02 Score=25.12 Aligned_cols=120 Identities=13% Similarity=0.172 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHHc---CCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHH
Q 019303 35 KPESDMIALIHHAINS---GITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~---Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 111 (343)
.+.++..+++....+. =+-.+|..+..+.-. ..+-+.+. ...-++|.+|+-... .....+.+.+-+.
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~--~~l~~~~~--~~piilV~NK~DLl~------k~~~~~~~~~~l~ 117 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLI--PELKRFVG--GNPVLLVGNKIDLLP------KSVNLSKIKEWMK 117 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCCcc--HHHHHHhC--CCCEEEEEEchhhCC------CCCCHHHHHHHHH
Confidence 3566677766665432 234667655544211 12223332 455678999987542 1234556666666
Q ss_pred HHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHH
Q 019303 112 ASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTI 165 (343)
Q Consensus 112 ~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 165 (343)
+.++.+|....|++.+. ......++++++.+.++.+.+.+-.+|.+|..-..+
T Consensus 118 ~~~k~~g~~~~~i~~vS-Ak~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 118 KRAKELGLKPVDIILVS-AKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred HHHHHcCCCcCcEEEec-CCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 66777776544665554 344566888999998887667788999999876543
No 173
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.02 E-value=1.1e+02 Score=26.39 Aligned_cols=87 Identities=10% Similarity=0.139 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCC-CcHHHHHHHhcCC-CeeEEee
Q 019303 102 DPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVH-PITAVQL 179 (343)
Q Consensus 102 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~-~~~~~q~ 179 (343)
+++...+ +-+.|-+-|+..+-+= +-. .+.++.+++++++..=-.||..+ .+.++++++.+.. .|-
T Consensus 14 ~~~~a~~-ia~al~~gGi~~iEit---~~t-----p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi---- 80 (201)
T PRK06015 14 DVEHAVP-LARALAAGGLPAIEIT---LRT-----PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI---- 80 (201)
T ss_pred CHHHHHH-HHHHHHHCCCCEEEEe---CCC-----ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE----
Confidence 3444433 4555666676555542 211 23566666676654335688877 5788888887763 332
Q ss_pred eccccccchhhcchHHHHHcCCeEEe
Q 019303 180 EWSLWSRDVEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 180 ~~n~~~~~~~~~l~~~~~~~gi~v~a 205 (343)
.++ ....+++++|+++||.++.
T Consensus 81 -vSP---~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 81 -VSP---GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred -ECC---CCCHHHHHHHHHcCCCEeC
Confidence 122 3346999999999999876
No 174
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.95 E-value=1.8e+02 Score=22.21 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCC----------CCCCCHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKR----------EIRGDPAY 105 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~----------~~~~~~~~ 105 (343)
|........--++++|.-|+-|-..|.-| .|.++---|-+ ..+++++++|+.+....+.. ..+-.-..
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG-~evfl~l~lld-~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~ 95 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIG-EEVFLLLELLD-FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLK 95 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccc-hhhhhhhhhcC-chhhccccceEEEEccCCCCCCCCceeeeccCCCchhh
Confidence 34444555555689999999999999753 34443333322 45689999998754322110 00112246
Q ss_pred HHHHHHHHHHH
Q 019303 106 VRAACEASLKR 116 (343)
Q Consensus 106 i~~~~~~sL~~ 116 (343)
++.++|.-|..
T Consensus 96 vr~~IE~~Lg~ 106 (117)
T COG3215 96 VRNQIETLLGG 106 (117)
T ss_pred HHHHHHHHHHh
Confidence 77778777654
No 175
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=31.77 E-value=67 Score=24.88 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCC
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYG 62 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg 62 (343)
+...+.+....+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 556788999999999999999999985
No 176
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=31.70 E-value=2.2e+02 Score=27.79 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee-cCC----------CCC-CHHH---HH-HHHHHHHHhCCccEEeCCCCcH
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQH-RID----------TRV-PIEV---TI-GELKKLVEEGKIKYIGLSEASA 162 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH-~p~----------~~~-~~~~---~~-~~l~~l~~~G~ir~iGvSn~~~ 162 (343)
..+.+.+.+.++..+ .++.+++.+|.+- .|. ... +.++ .+ .+.+.|.+.|.. .+++|||.-
T Consensus 214 gqt~e~~~~~l~~~~-~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~ye~s~far 290 (453)
T PRK09249 214 KQTPESFARTLEKVL-ELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQ-YIGMDHFAL 290 (453)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 447777777776665 4899999888653 111 001 1121 22 334455666654 478888763
No 177
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=31.66 E-value=4.4e+02 Score=24.70 Aligned_cols=153 Identities=12% Similarity=0.088 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCC--------cHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGPH--------TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVR 107 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g--------~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~ 107 (343)
+.++..+.+..+.+.|++.|=.--..+.+ ..+.-.=+++++.-.+++.|..=.. ..++.+.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN---------~~~~~~~-- 191 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFH---------GRVSKPM-- 191 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECC---------CCCCHHH--
Confidence 34556666777788999988654322110 0112222444442223333322221 1234443
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCcc-EEeCCCCcHHHHHHHhcCCCeeEEeeecccccc
Q 019303 108 AACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR 186 (343)
Q Consensus 108 ~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~ 186 (343)
..+-++.|. ..++.++-.|-+.. -++.+.+|+++.-+. ..|=|.++...+..++....++++|+.....-.
T Consensus 192 --A~~~~~~l~--~~~i~~iEeP~~~~----d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GG 263 (352)
T cd03325 192 --AKDLAKELE--PYRLLFIEEPVLPE----NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGG 263 (352)
T ss_pred --HHHHHHhcc--ccCCcEEECCCCcc----CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCC
Confidence 333334442 23555555554322 477888888886665 566777899999988877778899987655421
Q ss_pred -chhhcchHHHHHcCCeEEecc
Q 019303 187 -DVEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 187 -~~~~~l~~~~~~~gi~v~a~s 207 (343)
..-..+.+.|+++||.++..+
T Consensus 264 it~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 264 ITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHHHHHcCCcEeccC
Confidence 122489999999999998655
No 178
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=31.55 E-value=3.9e+02 Score=24.03 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcC
Q 019303 36 PESDMIALIHHAINSGITLLDTSD 59 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~ 59 (343)
+.++..++++.-.+.||..|+...
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 668888999999999999999974
No 179
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=31.28 E-value=3.5e+02 Score=26.15 Aligned_cols=108 Identities=12% Similarity=0.044 Sum_probs=57.3
Q ss_pred CCCCCCcHHHHHHHHhhcC----CCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcC-CCcccEEEeecCCCC
Q 019303 59 DIYGPHTNEILLGKALKGG----MRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLD-IDCIDLYYQHRIDTR 133 (343)
Q Consensus 59 ~~Yg~g~sE~~lG~al~~~----~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~-~d~iDl~~lH~p~~~ 133 (343)
..|| .|+.|-+++++. +.+-++|.|-+.... --+.+..-+++.-++.. -..+.++.+|.|+..
T Consensus 61 ~V~G---g~~~L~~~i~~~~~~~~p~~I~v~~tC~~~l---------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~ 128 (428)
T cd01965 61 AVFG---GEDNLIEALKNLLSRYKPDVIGVLTTCLTET---------IGDDVAGFIKEFRAEGPEPADFPVVYASTPSFK 128 (428)
T ss_pred eeEC---cHHHHHHHHHHHHHhcCCCEEEEECCcchhh---------cCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCC
Confidence 3566 466677777652 334467777665321 11223333333322211 013668888888765
Q ss_pred CCH----HHHHHHHHHH-------HHhCCccEEeCCCC---cHHHHHHHhcCCCeeEEe
Q 019303 134 VPI----EVTIGELKKL-------VEEGKIKYIGLSEA---SASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 134 ~~~----~~~~~~l~~l-------~~~G~ir~iGvSn~---~~~~l~~~~~~~~~~~~q 178 (343)
... +.++++|.+. ++.++|.-||-++. +.+.++++++...+.++.
T Consensus 129 g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 129 GSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred CcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 332 2344444432 23456888876654 357788887775555554
No 180
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=31.27 E-value=4.8e+02 Score=25.01 Aligned_cols=102 Identities=14% Similarity=0.060 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcCCCeEeCcCCCCC--CcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHH
Q 019303 39 DMIALIHHAINSGITLLDTSDIYGP--HTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKR 116 (343)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DTA~~Yg~--g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 116 (343)
+..++++.|++.|+.-|=+...|.. +.++..+-+.++...+-...|.+..-... ....+.+.+.++.+ ++
T Consensus 168 ~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~-------~~e~~av~~~~~~a-~~ 239 (415)
T cd01297 168 KMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG-------DSILEALDELLRLG-RE 239 (415)
T ss_pred HHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc-------ccHHHHHHHHHHHH-HH
Confidence 4566788889999987766555543 34666666666543333455555543210 11223344434333 23
Q ss_pred cCCCcccEEEeecCCCC----CCHHHHHHHHHHHHHhCC
Q 019303 117 LDIDCIDLYYQHRIDTR----VPIEVTIGELKKLVEEGK 151 (343)
Q Consensus 117 L~~d~iDl~~lH~p~~~----~~~~~~~~~l~~l~~~G~ 151 (343)
.| .-+++.|-.... ....++++.+++++++|.
T Consensus 240 ~g---~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~ 275 (415)
T cd01297 240 TG---RPVHISHLKSAGAPNWGKIDRLLALIEAARAEGL 275 (415)
T ss_pred hC---CCEEEEEEecCCCcccchHHHHHHHHHHHHHhCC
Confidence 34 235666654322 235566777777777775
No 181
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=31.18 E-value=4.3e+02 Score=24.48 Aligned_cols=109 Identities=17% Similarity=0.078 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHhCCccEEeCCC---------CcHHHHHHHhcC
Q 019303 102 DPAYVRAACEASLKRLDIDCIDLYYQHRIDTRV-PIEVTIGELKKLVEEGKIKYIGLSE---------ASASTIRRAHAV 171 (343)
Q Consensus 102 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~-~~~~~~~~l~~l~~~G~ir~iGvSn---------~~~~~l~~~~~~ 171 (343)
+.+.+.+.++...+..+ |.-+.+-.=|+.. +...+.+.++.+++.|.|..|.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~---I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPE---IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCC---ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 33444444443322223 3334454444433 2456777788888888776444432 344445555444
Q ss_pred CCeeEEeeecccccc--chhhcchHHHHHcCCeEEecccccccc
Q 019303 172 HPITAVQLEWSLWSR--DVEAEIVPTCRELGIGIVAYSPLGRGF 213 (343)
Q Consensus 172 ~~~~~~q~~~n~~~~--~~~~~l~~~~~~~gi~v~a~spl~~G~ 213 (343)
.....+.++.|-... ..-..-+..+++.||.+...++|..|.
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 322233333332110 111356777889999999999998874
No 182
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.11 E-value=3.7e+02 Score=25.67 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=58.9
Q ss_pred cEEEeecCCCC-----------CCHHHHHHHHHHHHH-hCC---ccEEeCC--CCcHHHHH---HHhcCC---CeeEEee
Q 019303 123 DLYYQHRIDTR-----------VPIEVTIGELKKLVE-EGK---IKYIGLS--EASASTIR---RAHAVH---PITAVQL 179 (343)
Q Consensus 123 Dl~~lH~p~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvS--n~~~~~l~---~~~~~~---~~~~~q~ 179 (343)
=.+.||.+++. .+++++++++.+... .|+ |+++=+. |-+.++++ +++... +..++-+
T Consensus 240 LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLI 319 (373)
T PRK14459 240 LAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLI 319 (373)
T ss_pred EEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEE
Confidence 34788998652 347889999888764 465 5566454 33444444 444434 5678899
Q ss_pred eccccccc----h-h---hcchHHHHHcCCeEEecccccc
Q 019303 180 EWSLWSRD----V-E---AEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 180 ~~n~~~~~----~-~---~~l~~~~~~~gi~v~a~spl~~ 211 (343)
+||++... + . ..+.+..+++||.+......+.
T Consensus 320 pyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 320 PLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred ccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 99996531 1 1 3577778899999998877764
No 183
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=30.72 E-value=2.7e+02 Score=26.92 Aligned_cols=102 Identities=21% Similarity=0.315 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCCeEeCcCCCCC-CcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCC
Q 019303 42 ALIHHAINSGITLLDTSDIYGP-HTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDID 120 (343)
Q Consensus 42 ~~l~~A~~~Gi~~~DTA~~Yg~-g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d 120 (343)
..+..+++.| .+-..-.||. |.--..|++.|.+...-.+.-.+-+ ..+.+.+++.++++.++++..
T Consensus 37 ~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv-----------~~gvkdlr~i~e~a~~~~~~g 103 (436)
T COG2256 37 KPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV-----------TSGVKDLREIIEEARKNRLLG 103 (436)
T ss_pred chHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-----------cccHHHHHHHHHHHHHHHhcC
Confidence 5678888877 2334447874 6667788888877433333322222 235788999999998888755
Q ss_pred cccEEEe---ecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCc
Q 019303 121 CIDLYYQ---HRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEAS 161 (343)
Q Consensus 121 ~iDl~~l---H~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 161 (343)
.==+++| |+.+. ..-++|--.++.|.|-.||.++-+
T Consensus 104 r~tiLflDEIHRfnK-----~QQD~lLp~vE~G~iilIGATTEN 142 (436)
T COG2256 104 RRTILFLDEIHRFNK-----AQQDALLPHVENGTIILIGATTEN 142 (436)
T ss_pred CceEEEEehhhhcCh-----hhhhhhhhhhcCCeEEEEeccCCC
Confidence 4455555 44442 356788899999999999998754
No 184
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=30.66 E-value=3.9e+02 Score=23.78 Aligned_cols=154 Identities=16% Similarity=0.103 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHH-hCCccEEeCCCCcHHHHHHHhcCCCeeE
Q 019303 98 EIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVE-EGKIKYIGLSEASASTIRRAHAVHPITA 176 (343)
Q Consensus 98 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~-~G~ir~iGvSn~~~~~l~~~~~~~~~~~ 176 (343)
...++.+...+-++. |.++|+++|++- ....-+.-++.++.+.+ ...++..+.+....+.++.+.+. .++.
T Consensus 14 ~~~~~~~~k~~i~~~-L~~~Gv~~iE~g------~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~-g~~~ 85 (259)
T cd07939 14 GVAFSREEKLAIARA-LDEAGVDEIEVG------IPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC-GVTA 85 (259)
T ss_pred CCCCCHHHHHHHHHH-HHHcCCCEEEEe------cCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC-CcCE
Q ss_pred Eeeecccccc--------------chhhcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhhccccchhhhH
Q 019303 177 VQLEWSLWSR--------------DVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLE 242 (343)
Q Consensus 177 ~q~~~n~~~~--------------~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (343)
+.+-++.-.. ..-.+.+.+|+++|+.+. +++...+..+
T Consensus 86 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~-~~~~~~~~~~--------------------------- 137 (259)
T cd07939 86 VHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS-VGAEDASRAD--------------------------- 137 (259)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE-EeeccCCCCC---------------------------
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcCCCCC
Q 019303 243 HNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLT 301 (343)
Q Consensus 243 ~~~~~~~~l~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~Lt 301 (343)
.+.+..+.+.+.+.|+.. +..+. -+|.-+|+++.+.+..+...++
T Consensus 138 --~~~~~~~~~~~~~~G~~~--------i~l~D----T~G~~~P~~v~~lv~~l~~~~~ 182 (259)
T cd07939 138 --PDFLIEFAEVAQEAGADR--------LRFAD----TVGILDPFTTYELIRRLRAATD 182 (259)
T ss_pred --HHHHHHHHHHHHHCCCCE--------EEeCC----CCCCCCHHHHHHHHHHHHHhcC
No 185
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=30.60 E-value=3.9e+02 Score=23.74 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcC-CCCC-C-cHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSD-IYGP-H-TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEA 112 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~-~Yg~-g-~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 112 (343)
+.+|+ ..|++.|...||.=+ .-|. | .....+. .++..-....-||..+|-. ...|..+..+...
T Consensus 9 ~~~EA----~~a~~~gaDiID~K~P~~GaLGA~~~~vi~-~i~~~~~~~~pvSAtiGDl--------p~~p~~~~~aa~~ 75 (235)
T PF04476_consen 9 NVEEA----EEALAGGADIIDLKNPAEGALGALFPWVIR-EIVAAVPGRKPVSATIGDL--------PMKPGTASLAALG 75 (235)
T ss_pred CHHHH----HHHHhCCCCEEEccCCCCCCCCCCCHHHHH-HHHHHcCCCCceEEEecCC--------CCCchHHHHHHHH
Confidence 44554 457889999999864 2221 2 2334443 3333233346688887744 2345555555444
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHH-------HHhCCccEEeCCCCc------HHHHHHHhcCCCeeEEee
Q 019303 113 SLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKL-------VEEGKIKYIGLSEAS------ASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 113 sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l-------~~~G~ir~iGvSn~~------~~~l~~~~~~~~~~~~q~ 179 (343)
.- .-|+||+=+=+.-.. +.++..+.|+.+ ..+.++-..+++.+. +..+-.......++.+++
T Consensus 76 ~a-~~GvdyvKvGl~g~~----~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMl 150 (235)
T PF04476_consen 76 AA-ATGVDYVKVGLFGCK----DYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVML 150 (235)
T ss_pred HH-hcCCCEEEEecCCCC----CHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEE
Confidence 43 458888776544322 233333333332 233557788888873 455555555556777776
Q ss_pred eccc------cccc---hhhcchHHHHHcCCeE
Q 019303 180 EWSL------WSRD---VEAEIVPTCRELGIGI 203 (343)
Q Consensus 180 ~~n~------~~~~---~~~~l~~~~~~~gi~v 203 (343)
.--. ++.- ...++++.|+++|+.+
T Consensus 151 DTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 151 DTADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred ecccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 4332 2221 1246788899998764
No 186
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=30.33 E-value=6.7e+02 Score=26.44 Aligned_cols=94 Identities=13% Similarity=0.049 Sum_probs=49.9
Q ss_pred CCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCC----CHHH--HHHHHHHHHHhCCc
Q 019303 79 RERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRV----PIEV--TIGELKKLVEEGKI 152 (343)
Q Consensus 79 R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~----~~~~--~~~~l~~l~~~G~i 152 (343)
.+++-|..|+..... .....+.+... .+-+-|+..|+|+||+ |...... .... ......++|+.=+|
T Consensus 616 ~~~~~v~~ri~~~~~---~~~g~~~~~~~-~~~~~l~~~g~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~ 688 (765)
T PRK08255 616 PAEKPMSVRISAHDW---VEGGNTPDDAV-EIARAFKAAGADLIDV---SSGQVSKDEKPVYGRMYQTPFADRIRNEAGI 688 (765)
T ss_pred CCCCeeEEEEccccc---cCCCCCHHHHH-HHHHHHHhcCCcEEEe---CCCCCCcCCCCCcCccccHHHHHHHHHHcCC
Confidence 357888889875311 01134555444 3555577888666664 4321100 0000 11223455555456
Q ss_pred cEEeCCCC-cHHHHHHHhcCCCeeEEee
Q 019303 153 KYIGLSEA-SASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 153 r~iGvSn~-~~~~l~~~~~~~~~~~~q~ 179 (343)
--+++.+. +++..+++++....|.+.+
T Consensus 689 pv~~~G~i~~~~~a~~~l~~g~~D~v~~ 716 (765)
T PRK08255 689 ATIAVGAISEADHVNSIIAAGRADLCAL 716 (765)
T ss_pred EEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence 66666664 6777888887766666544
No 187
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=30.26 E-value=1.3e+02 Score=21.75 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 019303 242 EHNKKLFERVNEIATRKGCTPSQLALAW 269 (343)
Q Consensus 242 ~~~~~~~~~l~~~a~~~g~s~aqlal~w 269 (343)
++..+.+.+|.++|++.|++.+++|.-.
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4556678899999999999999988643
No 188
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=30.15 E-value=3.7e+02 Score=23.36 Aligned_cols=100 Identities=19% Similarity=0.207 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHH
Q 019303 35 KPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASL 114 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 114 (343)
.+.++..++.+.|.+.|+.-+=..+.|- ....+.|+ ..++-|+|=++.... ..+.+.-...+++.+
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~v-----~~a~~~l~---~~~v~v~tVigFP~G------~~~~~~K~~E~~~Av 80 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSYV-----PLAKELLK---GTEVRICTVVGFPLG------ASTTDVKLYETKEAI 80 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHHH-----HHHHHHcC---CCCCeEEEEeCCCCC------CCcHHHHHHHHHHHH
Confidence 3778899999999999987776655542 33445554 346888888876532 123344445555554
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHh
Q 019303 115 KRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE 149 (343)
Q Consensus 115 ~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~ 149 (343)
+ +|.|-||+++-...-...+.+.+.+.+.+.++.
T Consensus 81 ~-~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~ 114 (211)
T TIGR00126 81 K-YGADEVDMVINIGALKDGNEEVVYDDIRAVVEA 114 (211)
T ss_pred H-cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHH
Confidence 4 799999998765543345566777777777664
No 189
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=29.74 E-value=1.2e+02 Score=26.17 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCC-CcHHHHHHHhcCC-CeeEEee
Q 019303 102 DPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVH-PITAVQL 179 (343)
Q Consensus 102 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~-~~~~~q~ 179 (343)
+++... .+-+.|-.-|+..+-+=+ +. ...++.+++++++..=-.||..+ .+.++++.+.+.. .|-
T Consensus 18 ~~e~a~-~~~~al~~~Gi~~iEit~-~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi---- 84 (204)
T TIGR01182 18 DVDDAL-PLAKALIEGGLRVLEVTL-RT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI---- 84 (204)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEeC-CC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE----
Confidence 444443 456667777866555432 11 23566677777664435688877 5788888887753 332
Q ss_pred eccccccchhhcchHHHHHcCCeEEe
Q 019303 180 EWSLWSRDVEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 180 ~~n~~~~~~~~~l~~~~~~~gi~v~a 205 (343)
.++ ....+++++|+++||.++.
T Consensus 85 -vsP---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 -VSP---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred -ECC---CCCHHHHHHHHHcCCcEEC
Confidence 122 2246999999999998876
No 190
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=29.60 E-value=4.2e+02 Score=23.88 Aligned_cols=123 Identities=13% Similarity=0.016 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCC--------CCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHH
Q 019303 35 KPESDMIALIHHAINSGITLLDTSDIY--------GPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYV 106 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Y--------g~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i 106 (343)
.+.++..++.....+.||..|+....- -....++.+.++.+..++.++...+...... ....-|..+
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~-----~~~~~p~~~ 92 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLV-----GYRHYPDDV 92 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhccccccc-----CccCCCcHH
Confidence 366777888888889999999998521 1112334444333333444444333321100 011123333
Q ss_pred -HHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeC-----CCCcHHHHHHH
Q 019303 107 -RAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGL-----SEASASTIRRA 168 (343)
Q Consensus 107 -~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGv-----Sn~~~~~l~~~ 168 (343)
+..++.+ ...|+|.|-+ ..+..+++.+.+.++.+++.|+.-.+.+ +.++++.+.+.
T Consensus 93 ~~~di~~~-~~~g~~~iri-----~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~ 154 (275)
T cd07937 93 VELFVEKA-AKNGIDIFRI-----FDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKL 154 (275)
T ss_pred HHHHHHHH-HHcCCCEEEE-----eecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHH
Confidence 3333333 3446554433 2233457778888999999997543333 34555555443
No 191
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=29.29 E-value=3.5e+02 Score=24.29 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCC-ccEEeCCCCcHHHHHHHhcCCCeeEEe
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGK-IKYIGLSEASASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~q 178 (343)
.++.+...+ +-+.|.++|++.|.+-. |... ++.+++.+.+.+.++ .+-.+......+.++.+.+. .++.+-
T Consensus 18 ~~s~~~k~~-i~~~L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~-g~~~i~ 89 (262)
T cd07948 18 FFDTEDKIE-IAKALDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET-GVDGVD 89 (262)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc-CcCEEE
Confidence 456665544 55569999988888763 4332 344555555555444 33455566677888888775 333333
Q ss_pred eeccc--------cccchh------hcchHHHHHcCCeEEecc
Q 019303 179 LEWSL--------WSRDVE------AEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 179 ~~~n~--------~~~~~~------~~l~~~~~~~gi~v~a~s 207 (343)
+.++. +.+..+ .+.+.+++++|+.+...-
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 32221 111111 356788889998765543
No 192
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=29.11 E-value=3.9e+02 Score=23.35 Aligned_cols=135 Identities=13% Similarity=0.104 Sum_probs=72.3
Q ss_pred HHHHHHcCCCeEeC-cCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 019303 44 IHHAINSGITLLDT-SDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCI 122 (343)
Q Consensus 44 l~~A~~~Gi~~~DT-A~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~i 122 (343)
|....++ .+.++. +..|+. -+++.+.+|.++ -.+++..+-|+..... .........+.+.+.+-+.++-|| +.+
T Consensus 12 L~~Ya~~-F~~VEvn~TFY~~-P~~~t~~~W~~~-~p~~F~F~vK~~~~iT-H~~~l~~~~~~~~~~F~~~~~~L~-~kl 86 (230)
T PF01904_consen 12 LAYYARH-FNTVEVNSTFYRI-PSPETVARWREQ-TPEGFRFSVKAPQLIT-HERRLRDCAEELWRRFLEALEPLG-EKL 86 (230)
T ss_dssp HHHHCCT--SEEEE-HHCCSS-S-HHHHHHHHCT-S-TT-EEEEE--CCCC-CCCHCGSSHHHHHHHHHHHCHHHH-T-E
T ss_pred HHHHHHh-CCeEEECcccCCC-CCHHHHHHHHhh-CCCCeEEEEeccHHhe-ecccccccHHHHHHHHHHHHHHHh-hcc
Confidence 4444344 555555 346663 367788999887 5688999999875431 000011235666566777999999 999
Q ss_pred cEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCCCeeEEeeeccccccchhhcchHHHHHcCCe
Q 019303 123 DLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIG 202 (343)
Q Consensus 123 Dl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 202 (343)
..+++.-|.....-.+.++.|..+.+.-. .....++.++.--+. .+++++.++++|+.
T Consensus 87 g~iL~Q~Ppsf~~~~~~~~~l~~~l~~~~-------------------~~~~~avE~R~~sW~---~~~~~~~l~~~~~~ 144 (230)
T PF01904_consen 87 GPILFQFPPSFRFTPENLERLDAFLDRLP-------------------RGFRYAVEFRHPSWF---TEEVFELLREHGVA 144 (230)
T ss_dssp EEEEEE--TT--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGG---CHHHHHHHHHTT-E
T ss_pred eEEEEEcCCCcCCCHHHHHHHHHHHhhcc-------------------cccceEEecCCcchh---hHHHHHHHHHcCCE
Confidence 99999988754444566666666655422 011223333322122 35788888889888
Q ss_pred EEe
Q 019303 203 IVA 205 (343)
Q Consensus 203 v~a 205 (343)
.+.
T Consensus 145 ~v~ 147 (230)
T PF01904_consen 145 LVI 147 (230)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 193
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=28.74 E-value=4.1e+02 Score=23.49 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=34.5
Q ss_pred hcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhhccccchhhhHHHHHHHHHHHHHHHHhCCC
Q 019303 190 AEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCT 261 (343)
Q Consensus 190 ~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s 261 (343)
...+++|+..|...+...|...|... -..+.++...+.++.+.++|+++|+.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYLT--------------------PPNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCC--------------------CHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 46788999999999877664332110 01223455666778888899998873
No 194
>PLN00191 enolase
Probab=28.53 E-value=4.3e+02 Score=26.05 Aligned_cols=97 Identities=10% Similarity=0.041 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEe-CC-CCcHHHHHHHhcCCCeeEEe
Q 019303 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIG-LS-EASASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 101 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iG-vS-n~~~~~l~~~~~~~~~~~~q 178 (343)
.+++...+-+.+.+++ .++.++-.|-.. +-|+.+.+|.++.++.-+| =+ ..+++.++++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 3555555544444433 356777776443 3477778888888887777 22 35688899998887788888
Q ss_pred eeccccccc-hhhcchHHHHHcCCeEEec
Q 019303 179 LEWSLWSRD-VEAEIVPTCRELGIGIVAY 206 (343)
Q Consensus 179 ~~~n~~~~~-~~~~l~~~~~~~gi~v~a~ 206 (343)
+..|-.-.- ...++.+.|+++|+.++.-
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 877754321 2247889999999998763
No 195
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=28.37 E-value=4.7e+02 Score=26.08 Aligned_cols=103 Identities=11% Similarity=0.097 Sum_probs=58.2
Q ss_pred CCCCCcHHHHHHHHhhcC----CCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC
Q 019303 60 IYGPHTNEILLGKALKGG----MRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVP 135 (343)
Q Consensus 60 ~Yg~g~sE~~lG~al~~~----~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~ 135 (343)
.+| +++.|-+++++. +.+-++|.|-+. ++-|-..++...++++.+.++++.++.|.....
T Consensus 66 v~G---~~~~L~~aI~~~~~~~~P~~I~V~sTC~-------------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~ 129 (511)
T TIGR01278 66 ARG---SQTRLVDTVRRVDDRFKPDLIVVTPSCT-------------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRK 129 (511)
T ss_pred ecc---hHHHHHHHHHHHHHhcCCCEEEEeCCCh-------------HHHhccCHHHHHHHhccCCCcEEEecCCCcccc
Confidence 356 566677777652 333455555543 333444455555555555688999999876543
Q ss_pred H----HHHHHHHHH-H----------HHhCCccEEeCCCC------cHHHHHHHhcCCCeeEEe
Q 019303 136 I----EVTIGELKK-L----------VEEGKIKYIGLSEA------SASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 136 ~----~~~~~~l~~-l----------~~~G~ir~iGvSn~------~~~~l~~~~~~~~~~~~q 178 (343)
. +.++.++.+ + .+.+.|.-||.++. +.+.++++++...+.++.
T Consensus 130 ~~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~ 193 (511)
T TIGR01278 130 ENQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNV 193 (511)
T ss_pred hhHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 2 223333222 1 12356888998762 445677777765555543
No 196
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=28.34 E-value=3.3e+02 Score=25.79 Aligned_cols=88 Identities=11% Similarity=0.214 Sum_probs=54.7
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHH-hCC---ccEEeCCC--CcHHHHHHH---hcCCCeeEEeeeccc
Q 019303 124 LYYQHRIDTR-----------VPIEVTIGELKKLVE-EGK---IKYIGLSE--ASASTIRRA---HAVHPITAVQLEWSL 183 (343)
Q Consensus 124 l~~lH~p~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvSn--~~~~~l~~~---~~~~~~~~~q~~~n~ 183 (343)
.+.||.+++. .+++++++++.++.+ .|+ |+++=+.+ -+.+++.++ +...++.++-++||+
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 3778988642 236788888887654 443 44553333 344555444 433456778889998
Q ss_pred cccc----hh----hcchHHHHHcCCeEEecccccc
Q 019303 184 WSRD----VE----AEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 184 ~~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 211 (343)
+... +. ..+.++.+++|+.+......+.
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 6532 11 2456677788999988877764
No 197
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=28.26 E-value=62 Score=22.49 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhC
Q 019303 246 KLFERVNEIATRKGCTPSQLALAWVHHQ 273 (343)
Q Consensus 246 ~~~~~l~~~a~~~g~s~aqlal~w~l~~ 273 (343)
.--..+.++|.+||+++.+ ...|.-..
T Consensus 21 ~~g~sv~~va~~~gi~~~~-l~~W~~~~ 47 (76)
T PF01527_consen 21 ESGESVSEVAREYGISPST-LYNWRKQY 47 (76)
T ss_dssp HHHCHHHHHHHHHTS-HHH-HHHHHHHH
T ss_pred HCCCceEeeeccccccccc-ccHHHHHH
Confidence 3345688999999997765 67888776
No 198
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=28.22 E-value=4.1e+02 Score=23.24 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCC
Q 019303 38 SDMIALIHHAINSGITLLDTSDIY 61 (343)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DTA~~Y 61 (343)
....+++..|.+.|+..|=.+++.
T Consensus 16 ~~~~e~i~~A~~~Gl~~i~itdH~ 39 (237)
T PRK00912 16 DTVLRLISEASHLGYSGIALSNHS 39 (237)
T ss_pred chHHHHHHHHHHCCCCEEEEecCc
Confidence 446789999999999988777664
No 199
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=28.21 E-value=66 Score=24.22 Aligned_cols=36 Identities=8% Similarity=0.207 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhccCCCCCCC
Q 019303 286 VENCNQNIKALSVKLTLEEMVELESIASADAVKGDR 321 (343)
Q Consensus 286 ~~~l~~nl~a~~~~Lt~e~~~~l~~~~~~~~~~~~~ 321 (343)
..|-.+-+..-++.|++++++.|++......-+|.+
T Consensus 18 SkHA~~RL~~R~I~l~~~~~~~i~~av~~A~~KG~k 53 (96)
T TIGR02530 18 SKHALERMRERNISINPDDWKKLLEAVEEAESKGVK 53 (96)
T ss_pred cHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 367788888888999999999999999877666654
No 200
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=28.13 E-value=2.1e+02 Score=25.91 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=13.5
Q ss_pred HHHHHHHcCCCeEeCcCC
Q 019303 43 LIHHAINSGITLLDTSDI 60 (343)
Q Consensus 43 ~l~~A~~~Gi~~~DTA~~ 60 (343)
-|...|+.|||+||-=-+
T Consensus 46 sI~~QL~~GvR~LdLdv~ 63 (267)
T cd08590 46 SITDQLDLGARFLELDVH 63 (267)
T ss_pred CHHHHHhhCCcEEEEeee
Confidence 356788999999994443
No 201
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=28.05 E-value=5.1e+02 Score=24.36 Aligned_cols=86 Identities=9% Similarity=-0.004 Sum_probs=60.0
Q ss_pred cEEEeecCCCCCCHHHHHHHHHHHHHhCCcc-EEeCCCCcHHHHHHHhcCCCeeEEeeecccccc-chhhcchHHHHHcC
Q 019303 123 DLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELG 200 (343)
Q Consensus 123 Dl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~g 200 (343)
++.++-.|-+. +.++.+.+|++...+. ..|=|-++..++.+++....++++|+..+..-. ..-..+...|+.+|
T Consensus 214 ~~~~iEeP~~~----~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~g 289 (368)
T TIGR02534 214 GVELIEQPTPA----ENREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAG 289 (368)
T ss_pred ChhheECCCCc----ccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcC
Confidence 45555555432 2367777788877665 678888899999888887778899887665332 11247888999999
Q ss_pred CeEEeccccccc
Q 019303 201 IGIVAYSPLGRG 212 (343)
Q Consensus 201 i~v~a~spl~~G 212 (343)
+.++..+.+.++
T Consensus 290 i~~~~~~~~~s~ 301 (368)
T TIGR02534 290 IALYGGTMLEGP 301 (368)
T ss_pred CceeeecchhhH
Confidence 998776544443
No 202
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=28.00 E-value=2e+02 Score=24.91 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCC
Q 019303 103 PAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSE 159 (343)
Q Consensus 103 ~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn 159 (343)
...+.+.+++.++.+|.+ +.++ .+...+.++..+.++.+..+| +..|=++.
T Consensus 13 ~~~~~~g~~~~a~~~g~~---~~~~--~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~ 63 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE---VEIV--FDAQNDPEEQIEQIEQAISQG-VDGIIVSP 63 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE---EEEE--EESTTTHHHHHHHHHHHHHTT-ESEEEEES
T ss_pred HHHHHHHHHHHHHHcCCE---EEEe--CCCCCCHHHHHHHHHHHHHhc-CCEEEecC
Confidence 355778888888998843 3333 333445577788888888777 66555543
No 203
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=27.74 E-value=2.6e+02 Score=23.84 Aligned_cols=99 Identities=17% Similarity=0.165 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCCcccE-EEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcH--HHHHHHhcCCCeeEEeeec
Q 019303 105 YVRAACEASLKRLDIDCIDL-YYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASA--STIRRAHAVHPITAVQLEW 181 (343)
Q Consensus 105 ~i~~~~~~sL~~L~~d~iDl-~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~--~~l~~~~~~~~~~~~q~~~ 181 (343)
.....+...+++.+..---+ +-+...............+..|++.|- .+.+.+|+. ..+..+. ..+++.+-+..
T Consensus 100 ~~~~~l~~~l~~~~~~~~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~-~l~~d~iKld~ 176 (241)
T smart00052 100 DLVPRVLELLEETGLPPQRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLK-RLPVDLLKIDK 176 (241)
T ss_pred hHHHHHHHHHHHcCCCHHHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHH-hCCCCeEEECH
Confidence 34466777777766542111 112221112234455689999999997 456655532 2233333 23466666655
Q ss_pred cccccc--------hhhcchHHHHHcCCeEEec
Q 019303 182 SLWSRD--------VEAEIVPTCRELGIGIVAY 206 (343)
Q Consensus 182 n~~~~~--------~~~~l~~~~~~~gi~v~a~ 206 (343)
+++... .-..++..|+..|+.+++-
T Consensus 177 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 177 SFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred HHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 544221 1246788999999998874
No 204
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=27.59 E-value=6.1e+02 Score=25.08 Aligned_cols=112 Identities=10% Similarity=0.024 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCC-CCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMR-ERVELATKFGISFADGKREIRGDPAYVRAACEASL 114 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 114 (343)
+++-....++.|.++||..|=..++-.+-++-+..-++.++... -.+.|+-... +.++.+.+.+.+++ +
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~s---------p~~t~~y~~~~a~~-l 172 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTS---------PVHTLNYYLSLVKE-L 172 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeC---------CcCcHHHHHHHHHH-H
Confidence 34556778999999999998888776642222222233333111 1122322222 23456667665555 4
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCc
Q 019303 115 KRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEAS 161 (343)
Q Consensus 115 ~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 161 (343)
..+|. |.+.|-...-.....++.+.+..+++... .-||+=.|+
T Consensus 173 ~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~-~pi~~H~Hn 215 (468)
T PRK12581 173 VEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTN-LPLIVHTHA 215 (468)
T ss_pred HHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccC-CeEEEEeCC
Confidence 56775 45555544444455566666666666443 246665553
No 205
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=27.46 E-value=5.3e+02 Score=24.35 Aligned_cols=141 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCC-ccEEeCCCCcHHHHHHHhcCCCeeEEeeeccccc
Q 019303 107 RAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGK-IKYIGLSEASASTIRRAHAVHPITAVQLEWSLWS 185 (343)
Q Consensus 107 ~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~ 185 (343)
+..+-+.|.++|+++|.+ .....-+.-++.+..+.+.+. .+..+++....+.++.+.+. .++.+.+-.+.-+
T Consensus 25 k~~ia~~L~~~Gv~~IEv------G~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~-g~~~i~i~~~~Sd 97 (365)
T TIGR02660 25 KLAIARALDEAGVDELEV------GIPAMGEEERAVIRAIVALGLPARLMAWCRARDADIEAAARC-GVDAVHISIPVSD 97 (365)
T ss_pred HHHHHHHHHHcCCCEEEE------eCCCCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcC-CcCEEEEEEccCH
Q ss_pred cchhh--------------cchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhhccccchhhhHHHHHHHHHH
Q 019303 186 RDVEA--------------EIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERV 251 (343)
Q Consensus 186 ~~~~~--------------~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 251 (343)
..... +.+++++++|+. +.+++-..+.-. .+.+..+
T Consensus 98 ~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~-v~~~~ed~~r~~-----------------------------~~~l~~~ 147 (365)
T TIGR02660 98 LQIEAKLRKDRAWVLERLARLVSFARDRGLF-VSVGGEDASRAD-----------------------------PDFLVEL 147 (365)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHhCCCE-EEEeecCCCCCC-----------------------------HHHHHHH
Q ss_pred HHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhc
Q 019303 252 NEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKAL 296 (343)
Q Consensus 252 ~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~ 296 (343)
.+.+.+.|.+. +..+. -+|..+|.++.+.++.+
T Consensus 148 ~~~~~~~Ga~~--------i~l~D----T~G~~~P~~v~~lv~~l 180 (365)
T TIGR02660 148 AEVAAEAGADR--------FRFAD----TVGILDPFSTYELVRAL 180 (365)
T ss_pred HHHHHHcCcCE--------EEEcc----cCCCCCHHHHHHHHHHH
No 206
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.40 E-value=5.4e+02 Score=24.40 Aligned_cols=86 Identities=12% Similarity=0.145 Sum_probs=55.2
Q ss_pred EeecCCCC-----------CCHHHHHHHHHHHH-HhCC---ccEEeCCC--CcHHHHHHHhc---CCCeeEEeeeccccc
Q 019303 126 YQHRIDTR-----------VPIEVTIGELKKLV-EEGK---IKYIGLSE--ASASTIRRAHA---VHPITAVQLEWSLWS 185 (343)
Q Consensus 126 ~lH~p~~~-----------~~~~~~~~~l~~l~-~~G~---ir~iGvSn--~~~~~l~~~~~---~~~~~~~q~~~n~~~ 185 (343)
-||.+++. -+++++++++.+.. +.|+ |+++=+.. .+.++++++.+ ..+..++-++||++.
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~ 304 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHE 304 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCC
Confidence 48988652 24567888887655 4455 56765553 45666555543 345678889999865
Q ss_pred cc----hh----hcchHHHHHcCCeEEecccccc
Q 019303 186 RD----VE----AEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 186 ~~----~~----~~l~~~~~~~gi~v~a~spl~~ 211 (343)
.. +. ..+.+..+++||.+......+.
T Consensus 305 ~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~ 338 (356)
T PRK14462 305 GSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGL 338 (356)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 31 11 2355567788999988877764
No 207
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=27.35 E-value=4.3e+02 Score=24.84 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHHcC-CCeEeCcCCCCCCcHHHHHHHHhhcCC-CCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHH
Q 019303 36 PESDMIALIHHAINSG-ITLLDTSDIYGPHTNEILLGKALKGGM-RERVELATKFGISFADGKREIRGDPAYVRAACEAS 113 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~G-i~~~DTA~~Yg~g~sE~~lG~al~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~s 113 (343)
+.++..+.-+.|-+.| .+|...|..++.|+.=..+-++++... --.+-+.--+| ..+.+. .+-
T Consensus 85 ~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG----------~l~~eq-----~~~ 149 (335)
T COG0502 85 EVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLG----------MLTEEQ-----AEK 149 (335)
T ss_pred CHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccC----------CCCHHH-----HHH
Confidence 5566666666777889 999999998874334444445554411 11132333333 123333 344
Q ss_pred HHHcCCCcccEEEeecCCC----------CCCHHHHHHHHHHHHHhCCcc----EEeCCCCcHHHHHHHhcCCCee-EEe
Q 019303 114 LKRLDIDCIDLYYQHRIDT----------RVPIEVTIGELKKLVEEGKIK----YIGLSEASASTIRRAHAVHPIT-AVQ 178 (343)
Q Consensus 114 L~~L~~d~iDl~~lH~p~~----------~~~~~~~~~~l~~l~~~G~ir----~iGvSn~~~~~l~~~~~~~~~~-~~q 178 (343)
|+.-|+|+. -|+.+. ...+++-++.++.+++.|.=- -+|+..-..+++..+......+ .-.
T Consensus 150 L~~aGvd~y----nhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pds 225 (335)
T COG0502 150 LADAGVDRY----NHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDS 225 (335)
T ss_pred HHHcChhhe----ecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCe
Confidence 677787654 464432 345788999999999998732 2456655555555544332222 334
Q ss_pred eeccccccc
Q 019303 179 LEWSLWSRD 187 (343)
Q Consensus 179 ~~~n~~~~~ 187 (343)
+++|.+.+.
T Consensus 226 VPIn~l~P~ 234 (335)
T COG0502 226 VPINFLNPI 234 (335)
T ss_pred eeeeeecCC
Confidence 566666553
No 208
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=27.03 E-value=71 Score=20.45 Aligned_cols=21 Identities=24% Similarity=-0.004 Sum_probs=13.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHH
Q 019303 250 RVNEIATRKGCTPSQLALAWV 270 (343)
Q Consensus 250 ~l~~~a~~~g~s~aqlal~w~ 270 (343)
.++.+.++.|+|..++|-+.-
T Consensus 6 ~l~~~r~~~gltq~~lA~~~g 26 (58)
T TIGR03070 6 LVRARRKALGLTQADLADLAG 26 (58)
T ss_pred HHHHHHHHcCCCHHHHHHHhC
Confidence 455566667777777775543
No 209
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=26.98 E-value=3e+02 Score=23.15 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=61.4
Q ss_pred HcCCCeEeCcCC----CC---CCcHHHHHHHHhhcCCCCCEEEEeecccccC-CCCCC--CCCCHHHHHHHHHHHHHHcC
Q 019303 49 NSGITLLDTSDI----YG---PHTNEILLGKALKGGMRERVELATKFGISFA-DGKRE--IRGDPAYVRAACEASLKRLD 118 (343)
Q Consensus 49 ~~Gi~~~DTA~~----Yg---~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~-~~~~~--~~~~~~~i~~~~~~sL~~L~ 118 (343)
.++|-++||-.. |. .|+.+..+-..|++ .|=++.|.++--..|. +|-.. ..-++.....-+++.|++-+
T Consensus 78 a~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~-~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~ 156 (187)
T COG3172 78 ANKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAE-YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENN 156 (187)
T ss_pred CCceEEEeccHHHHHHHHHHHcccCCchHHHHHhh-cccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhC
Confidence 359999999652 21 13344455566666 6777887776543333 22111 12256777788888888887
Q ss_pred CCcccEEEeecCCCCCCHHHHHHHHHHHHHhC
Q 019303 119 IDCIDLYYQHRIDTRVPIEVTIGELKKLVEEG 150 (343)
Q Consensus 119 ~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G 150 (343)
..|+ .|..++.........++.+++..++
T Consensus 157 ~~~v---~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 157 IPFV---VIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred CcEE---EEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 6654 4455554455567888888888776
No 210
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=26.96 E-value=3e+02 Score=23.72 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=52.7
Q ss_pred HHHcCCCcccEEEee-cCCC-CCCHH----HHHHHHHHHHH--hCCccEEeCCCCcHHHHHHHhcCCCeeEEeeeccccc
Q 019303 114 LKRLDIDCIDLYYQH-RIDT-RVPIE----VTIGELKKLVE--EGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWS 185 (343)
Q Consensus 114 L~~L~~d~iDl~~lH-~p~~-~~~~~----~~~~~l~~l~~--~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~ 185 (343)
+..-|-|+||+=--- +|.. ..+.+ .+...++.+++ .+. -+-+-++.++.++.+++. ..+.+-.- +-+.
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~-~~~~ 103 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDI-SGFE 103 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEET-TTTS
T ss_pred HHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEec-cccc
Confidence 345588999984221 2221 12223 34445555554 233 566778889999998877 33333211 1111
Q ss_pred cchhhcchHHHHHcCCeEEecccc
Q 019303 186 RDVEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 186 ~~~~~~l~~~~~~~gi~v~a~spl 209 (343)
. ..++++.++++|..++++..-
T Consensus 104 ~--~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 104 D--DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp S--STTHHHHHHHHTSEEEEESES
T ss_pred c--cchhhhhhhcCCCEEEEEecc
Confidence 1 468999999999999986655
No 211
>PRK07094 biotin synthase; Provisional
Probab=26.96 E-value=3.6e+02 Score=24.81 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEe
Q 019303 36 PESDMIALIHHAINSGITLLD 56 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~D 56 (343)
+.++..+.++.+.+.|++.|-
T Consensus 71 s~eei~~~~~~~~~~g~~~i~ 91 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIV 91 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEE
Confidence 677788888888899998774
No 212
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=26.88 E-value=2.1e+02 Score=24.48 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=44.9
Q ss_pred cchHHHHHcCCeEEe-ccccccccCCCCCCCCCCCCchhhhhhccccchhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 019303 191 EIVPTCRELGIGIVA-YSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCTPSQLALAW 269 (343)
Q Consensus 191 ~l~~~~~~~gi~v~a-~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~aqlal~w 269 (343)
+--+..+++||.++. +-.-++|...+.....+..++ + ..+..+.....+..+.+.++++++++.+.|..-
T Consensus 123 ~~~~~L~~~Gi~~~Pd~~~NaGGv~~~~~e~~~~~~~-~--------~~~~~~~~~~~~~~v~~~a~~~~~~~~~aA~~~ 193 (200)
T cd01075 123 RHGQMLHERGILYAPDYVVNAGGLINVADELYGGNEA-R--------VLAKVEAIYDTLLEIFAQAKQDGITTLEAADRM 193 (200)
T ss_pred hHHHHHHHCCCEEeCceeeeCcCceeehhHHhCCcHH-H--------HHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455667888999888 666677766511111111100 0 012233445566778888999999999999877
Q ss_pred HHh
Q 019303 270 VHH 272 (343)
Q Consensus 270 ~l~ 272 (343)
.+.
T Consensus 194 a~~ 196 (200)
T cd01075 194 AEE 196 (200)
T ss_pred HHH
Confidence 654
No 213
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=26.22 E-value=5.3e+02 Score=23.93 Aligned_cols=94 Identities=17% Similarity=0.105 Sum_probs=47.5
Q ss_pred CCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCC--C--CCH--HHHHHHHHHHHHhCCc
Q 019303 79 RERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDT--R--VPI--EVTIGELKKLVEEGKI 152 (343)
Q Consensus 79 R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~--~--~~~--~~~~~~l~~l~~~G~i 152 (343)
.+++.|..|+..... .....+.+... .+-+.|+..|+|+|+ +|.... . .+. ...++.+.++++.-.|
T Consensus 219 G~d~~v~vri~~~~~---~~~g~~~~e~~-~ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~i 291 (336)
T cd02932 219 PEDKPLFVRISATDW---VEGGWDLEDSV-ELAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAERIRQEAGI 291 (336)
T ss_pred CCCceEEEEEccccc---CCCCCCHHHHH-HHHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHHHHhhCCC
Confidence 456778788774310 01123444433 244456667765554 342110 0 011 1124555666666566
Q ss_pred cEEeCCCC-cHHHHHHHhcCCCeeEEee
Q 019303 153 KYIGLSEA-SASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 153 r~iGvSn~-~~~~l~~~~~~~~~~~~q~ 179 (343)
--++..+. +++.++++++....+.+++
T Consensus 292 PVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 292 PVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 66666664 6677777776655555543
No 214
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=25.99 E-value=5.3e+02 Score=23.82 Aligned_cols=85 Identities=8% Similarity=0.022 Sum_probs=60.4
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHhCCc-cEEeCCCCcHHHHHHHhcCCCeeEEeeeccccccchhhcchHHHHHcC
Q 019303 122 IDLYYQHRIDTRVPIEVTIGELKKLVEEGKI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELG 200 (343)
Q Consensus 122 iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~i-r~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g 200 (343)
.++.++-.|-+.. .++.+.+|++.-.+ -..|=|-++...+..++.....+++|+..+..-. -..+.+.|+.+|
T Consensus 192 ~~i~~iEqP~~~~----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG--i~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPPD----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS--PSRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCcc----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC--HHHHHHHHHHhC
Confidence 4677777765432 35667777776544 3567788888999888887778888887765443 236778999999
Q ss_pred CeEEeccccccc
Q 019303 201 IGIVAYSPLGRG 212 (343)
Q Consensus 201 i~v~a~spl~~G 212 (343)
|.++..+.+..|
T Consensus 266 i~~~~~~~~es~ 277 (320)
T PRK02714 266 LDAVFSSVFETA 277 (320)
T ss_pred CCEEEEechhhH
Confidence 999887655444
No 215
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=25.86 E-value=52 Score=29.34 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHh-CCccEEeC-------CCCcHHHHHHHhcCCCeeEEe
Q 019303 107 RAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE-GKIKYIGL-------SEASASTIRRAHAVHPITAVQ 178 (343)
Q Consensus 107 ~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~-G~ir~iGv-------Sn~~~~~l~~~~~~~~~~~~q 178 (343)
...+++.|+-.| +|||++-+-|-......+++++...++.++ |---+.|= ..-..++..+.+....|+++.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 466888888888 999999999865544444555555555444 33333331 112223333333345667766
Q ss_pred eeccccccchh--hcchHHHHHcCCeEEe
Q 019303 179 LEWSLWSRDVE--AEIVPTCRELGIGIVA 205 (343)
Q Consensus 179 ~~~n~~~~~~~--~~l~~~~~~~gi~v~a 205 (343)
+.-.-+....+ ..++..++++|..|++
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 65444443222 3677777777777654
No 216
>PF14502 HTH_41: Helix-turn-helix domain
Probab=25.83 E-value=73 Score=20.66 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCCH--HHHHHHHHHhCCCCe
Q 019303 248 FERVNEIATRKGCTP--SQLALAWVHHQGDDV 277 (343)
Q Consensus 248 ~~~l~~~a~~~g~s~--aqlal~w~l~~~~v~ 277 (343)
+..+.+++++++++. .|-||+++-..+.|.
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 347888999999885 799999999887643
No 217
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.80 E-value=5.7e+02 Score=24.10 Aligned_cols=106 Identities=12% Similarity=0.172 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHcC-CCcccEEEeecCCCC-----------CCHHHHHHHHHH-HHHhCC---ccEEeCC--CCcHHHHHH
Q 019303 106 VRAACEASLKRLD-IDCIDLYYQHRIDTR-----------VPIEVTIGELKK-LVEEGK---IKYIGLS--EASASTIRR 167 (343)
Q Consensus 106 i~~~~~~sL~~L~-~d~iDl~~lH~p~~~-----------~~~~~~~~~l~~-l~~~G~---ir~iGvS--n~~~~~l~~ 167 (343)
+++-.+.-+++|+ .+....+.||.+++. .+++++++++.+ +.+.|+ |+++=+. |.+.+++++
T Consensus 196 i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~ 275 (345)
T PRK14457 196 IPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEE 275 (345)
T ss_pred HHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHH
Confidence 4443343344443 344577899998642 246778877766 455564 5666554 345566555
Q ss_pred Hh---cCCCeeEEeeeccccccc----hh----hcchHHHHHcCCeEEecccccc
Q 019303 168 AH---AVHPITAVQLEWSLWSRD----VE----AEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 168 ~~---~~~~~~~~q~~~n~~~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 211 (343)
+. ...+..++-++||++... +. ..+.+..+++||.+......+.
T Consensus 276 La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 276 LANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 43 334457888999986432 11 2456677788999988776654
No 218
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.75 E-value=4.6e+02 Score=24.71 Aligned_cols=88 Identities=13% Similarity=0.144 Sum_probs=56.1
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHHh-CC---ccEEeCC--CCcHHHHHHH---hcCCCeeEEeeeccc
Q 019303 124 LYYQHRIDTR-----------VPIEVTIGELKKLVEE-GK---IKYIGLS--EASASTIRRA---HAVHPITAVQLEWSL 183 (343)
Q Consensus 124 l~~lH~p~~~-----------~~~~~~~~~l~~l~~~-G~---ir~iGvS--n~~~~~l~~~---~~~~~~~~~q~~~n~ 183 (343)
.+.||.|+.. .+++++++++.++.++ |+ ++++=+. |.+.++++++ +...+..++-++||.
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~ 294 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNT 294 (342)
T ss_pred EEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 3788988542 3468899999987755 33 3354343 3455555544 443456788889997
Q ss_pred cccc---hh----hcchHHHHHcCCeEEecccccc
Q 019303 184 WSRD---VE----AEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 184 ~~~~---~~----~~l~~~~~~~gi~v~a~spl~~ 211 (343)
.... +. ....+..+++||.+......+.
T Consensus 295 ~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 295 EFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 4321 11 3466677888999998877764
No 219
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.74 E-value=4.9e+02 Score=23.35 Aligned_cols=76 Identities=11% Similarity=-0.019 Sum_probs=40.7
Q ss_pred cccEEEeecC--CCCCCHHHHHHHHHHHHHhCCccEEeCCCCc-HHHHHHHh-cC-CCeeEEeeeccccccchhhcchHH
Q 019303 121 CIDLYYQHRI--DTRVPIEVTIGELKKLVEEGKIKYIGLSEAS-ASTIRRAH-AV-HPITAVQLEWSLWSRDVEAEIVPT 195 (343)
Q Consensus 121 ~iDl~~lH~p--~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~-~~~l~~~~-~~-~~~~~~q~~~n~~~~~~~~~l~~~ 195 (343)
-+|++-|--| |+-.+-.-+-++-.+..+.|. +-.. .+.++++. .. ..+-+++.-||++.+--.+.+++.
T Consensus 39 Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~------~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~ 112 (258)
T PRK13111 39 GADIIELGIPFSDPVADGPVIQAASLRALAAGV------TLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAAD 112 (258)
T ss_pred CCCEEEECCCCCCCcccCHHHHHHHHHHHHcCC------CHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHH
Confidence 3677666666 333333345555555555553 1111 12233333 11 123367888888765334578888
Q ss_pred HHHcCCe
Q 019303 196 CRELGIG 202 (343)
Q Consensus 196 ~~~~gi~ 202 (343)
|++.|+.
T Consensus 113 ~~~aGvd 119 (258)
T PRK13111 113 AAEAGVD 119 (258)
T ss_pred HHHcCCc
Confidence 8888874
No 220
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=25.58 E-value=5.1e+02 Score=24.33 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEee
Q 019303 100 RGDPAYVRAACEASLKRLDIDCIDLYYQH 128 (343)
Q Consensus 100 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH 128 (343)
.-+.+.+.+.++..+ .|+.+++.++.+-
T Consensus 163 gqt~~~~~~~l~~~~-~l~~~~is~y~l~ 190 (360)
T TIGR00539 163 LQTLNSLKEELKLAK-ELPINHLSAYALS 190 (360)
T ss_pred CCCHHHHHHHHHHHH-ccCCCEEEeecce
Confidence 346777777776654 5788888877654
No 221
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.32 E-value=5.6e+02 Score=24.17 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=55.8
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHhC--C--ccEEeCC--CCcHHHHHHHhc---CCCeeEEeeecccc
Q 019303 125 YYQHRIDTR-----------VPIEVTIGELKKLVEEG--K--IKYIGLS--EASASTIRRAHA---VHPITAVQLEWSLW 184 (343)
Q Consensus 125 ~~lH~p~~~-----------~~~~~~~~~l~~l~~~G--~--ir~iGvS--n~~~~~l~~~~~---~~~~~~~q~~~n~~ 184 (343)
+-||.+++. .+++++++++.+....+ + |+++=+. |.+.++++++.+ ..+..++-++||+.
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 668887542 23577888887776654 2 3455444 445566655543 34557788999986
Q ss_pred ccc----hh----hcchHHHHHcCCeEEecccccc
Q 019303 185 SRD----VE----AEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 185 ~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 211 (343)
... +. ..+...++++||.+....+.+.
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGS 325 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 431 11 2456678899999999888764
No 222
>PRK15108 biotin synthase; Provisional
Probab=25.26 E-value=5.7e+02 Score=23.97 Aligned_cols=102 Identities=14% Similarity=0.148 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCC-CC-CcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHH
Q 019303 35 KPESDMIALIHHAINSGITLLDTSDIY-GP-HTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEA 112 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Y-g~-g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 112 (343)
.+.++..+..+.+.+.|++-|-..... +. ...-+.+-+.++..+...+.++.-.|. .+.+ .-+
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~----------ls~e-----~l~ 140 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT----------LSES-----QAQ 140 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc----------CCHH-----HHH
Confidence 477888888888889999988443221 11 112244555554422222333322332 2333 333
Q ss_pred HHHHcCCCcccEEEeecC------CCCCCHHHHHHHHHHHHHhCC
Q 019303 113 SLKRLDIDCIDLYYQHRI------DTRVPIEVTIGELKKLVEEGK 151 (343)
Q Consensus 113 sL~~L~~d~iDl~~lH~p------~~~~~~~~~~~~l~~l~~~G~ 151 (343)
-|+..|+|++.+-+=-.| -....+++.++.++.+++.|.
T Consensus 141 ~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~ 185 (345)
T PRK15108 141 RLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGI 185 (345)
T ss_pred HHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 466677775433211111 112457889999999999997
No 223
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=25.23 E-value=1.6e+02 Score=26.14 Aligned_cols=97 Identities=13% Similarity=0.076 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHH-hCCccEEeCCCC--------cHHHHHHHhcCCCeeEE
Q 019303 107 RAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVE-EGKIKYIGLSEA--------SASTIRRAHAVHPITAV 177 (343)
Q Consensus 107 ~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~-~G~ir~iGvSn~--------~~~~l~~~~~~~~~~~~ 177 (343)
.+.++..|+-.| +|||.+=+-|-......+++++...++.+ -|---+.| .++ ..++..+.+..-.|+++
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~I 88 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAV 88 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEE
Confidence 356788888888 89999999886655545556666555544 45545556 211 11111122223456777
Q ss_pred eeeccccccchh--hcchHHHHHcCCeEEe
Q 019303 178 QLEWSLWSRDVE--AEIVPTCRELGIGIVA 205 (343)
Q Consensus 178 q~~~n~~~~~~~--~~l~~~~~~~gi~v~a 205 (343)
.+.-..+.-..+ ..+++.++++|..+..
T Consensus 89 EiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 89 EISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 665554443322 3678888888877654
No 224
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=25.19 E-value=4.3e+02 Score=22.51 Aligned_cols=70 Identities=26% Similarity=0.344 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCC-Cc---HHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGP-HT---NEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~-g~---sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 111 (343)
+.++...+.+.|.++|..|+=|+..|.. |. .-+.+.+.++ .. +-.|.... .+ +.+...+-++
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~--v~ik~aGG-------ik-t~~~~l~~~~ 194 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GR--VGVKAAGG-------IR-TLEDALAMIE 194 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CC--ceEEEeCC-------CC-CHHHHHHHHH
Confidence 4677888999999999999999988862 21 2244555554 11 23343321 12 6777777777
Q ss_pred HHHHHcCC
Q 019303 112 ASLKRLDI 119 (343)
Q Consensus 112 ~sL~~L~~ 119 (343)
.-..|+|+
T Consensus 195 ~g~~riG~ 202 (203)
T cd00959 195 AGATRIGT 202 (203)
T ss_pred hChhhccC
Confidence 77777776
No 225
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=25.12 E-value=1.2e+02 Score=26.18 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCC-CcHHHHHHHhcCC-CeeEEee
Q 019303 102 DPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVH-PITAVQL 179 (343)
Q Consensus 102 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~-~~~~~q~ 179 (343)
+++.. ..+-+.|-.-|+..+-+ -+-.+ ..++.++.++++--=-.||..+ .+.++++.+++.. .|.+
T Consensus 18 ~~~~a-~~~~~al~~gGi~~iEi---T~~t~-----~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fiv--- 85 (196)
T PF01081_consen 18 DPEDA-VPIAEALIEGGIRAIEI---TLRTP-----NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIV--- 85 (196)
T ss_dssp SGGGH-HHHHHHHHHTT--EEEE---ETTST-----THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEE---
T ss_pred CHHHH-HHHHHHHHHCCCCEEEE---ecCCc-----cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEE---
Confidence 34444 33455556666544443 22221 2344444444432224588877 5788888887653 3322
Q ss_pred eccccccchhhcchHHHHHcCCeEEe
Q 019303 180 EWSLWSRDVEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 180 ~~n~~~~~~~~~l~~~~~~~gi~v~a 205 (343)
+ +....+++++|+++||.++.
T Consensus 86 --S---P~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 86 --S---PGFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp --E---SS--HHHHHHHHHHTSEEEE
T ss_pred --C---CCCCHHHHHHHHHcCCcccC
Confidence 2 23356999999999999887
No 226
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=25.12 E-value=3.6e+02 Score=24.08 Aligned_cols=15 Identities=33% Similarity=0.804 Sum_probs=8.5
Q ss_pred cchHHHHHcCCeEEe
Q 019303 191 EIVPTCRELGIGIVA 205 (343)
Q Consensus 191 ~l~~~~~~~gi~v~a 205 (343)
..++.|++.|+.++.
T Consensus 89 ~~i~~A~~lG~~~v~ 103 (279)
T cd00019 89 DEIERCEELGIRLLV 103 (279)
T ss_pred HHHHHHHHcCCCEEE
Confidence 455556666666544
No 227
>PRK06256 biotin synthase; Validated
Probab=25.04 E-value=5.5e+02 Score=23.71 Aligned_cols=140 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCC-CeEeCcCCCCCCcHHH---HHHHHhhc-CCCCCEEEEeecccccCCCCCCCCCCHHHHHHH
Q 019303 35 KPESDMIALIHHAINSGI-TLLDTSDIYGPHTNEI---LLGKALKG-GMRERVELATKFGISFADGKREIRGDPAYVRAA 109 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi-~~~DTA~~Yg~g~sE~---~lG~al~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 109 (343)
.+.++..+.++.+.+.|+ +++-.+..++. ... .+-+.++. ..+-.+-+.+-.+.. +++.+.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p--~~~~~~~~~e~i~~i~~~~~i~~~~~~g~l----------~~e~l~~- 157 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGP--SGKEVDQVVEAVKAIKEETDLEICACLGLL----------TEEQAER- 157 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCC--CchHHHHHHHHHHHHHhcCCCcEEecCCcC----------CHHHHHH-
Q ss_pred HHHHHHHcCCCcccEE------EeecCCCCCCHHHHHHHHHHHHHhCCccE----EeCCCCcHHHHHHHhcC-CCeeEEe
Q 019303 110 CEASLKRLDIDCIDLY------YQHRIDTRVPIEVTIGELKKLVEEGKIKY----IGLSEASASTIRRAHAV-HPITAVQ 178 (343)
Q Consensus 110 ~~~sL~~L~~d~iDl~------~lH~p~~~~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~l~~~~~~-~~~~~~q 178 (343)
|++.|++.+-+- .+.........++.+++++.+++.|.--. +|+ +.+.+++.+.+.. ....+..
T Consensus 158 ----LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~~l~~l~~~~ 232 (336)
T PRK06256 158 ----LKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAFFLKELDADS 232 (336)
T ss_pred ----HHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHHHHHhCCCCE
Q ss_pred eeccccccchhhcc
Q 019303 179 LEWSLWSRDVEAEI 192 (343)
Q Consensus 179 ~~~n~~~~~~~~~l 192 (343)
+.+|.+.+.+...+
T Consensus 233 v~i~~l~P~pGT~l 246 (336)
T PRK06256 233 IPINFLNPIPGTPL 246 (336)
T ss_pred EeecccccCCCCCC
No 228
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.93 E-value=5.9e+02 Score=24.04 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=58.7
Q ss_pred HHHHcCCCcccEEEeecCCCC-----------CCHHHHHHHHHHHHHh-CC---ccEEeCC--CCcHHHHHHHh---cCC
Q 019303 113 SLKRLDIDCIDLYYQHRIDTR-----------VPIEVTIGELKKLVEE-GK---IKYIGLS--EASASTIRRAH---AVH 172 (343)
Q Consensus 113 sL~~L~~d~iDl~~lH~p~~~-----------~~~~~~~~~l~~l~~~-G~---ir~iGvS--n~~~~~l~~~~---~~~ 172 (343)
-|...+...+++ -||.+++. .+++++++++.+...+ |+ |+++=+. |.+.++++.+. ...
T Consensus 207 ~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~ 285 (354)
T PRK14460 207 ELGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRT 285 (354)
T ss_pred HHHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345556555554 67877542 3567788888776443 22 4444332 44555555443 334
Q ss_pred CeeEEeeeccccccc----hh----hcchHHHHHcCCeEEecccccc
Q 019303 173 PITAVQLEWSLWSRD----VE----AEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 173 ~~~~~q~~~n~~~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 211 (343)
+..++-++||+.... +. ..+.+..+++||.+......+.
T Consensus 286 ~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~ 332 (354)
T PRK14460 286 KCKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQ 332 (354)
T ss_pred CCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 456788899986432 11 2456677888999988777764
No 229
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=24.86 E-value=6.4e+02 Score=24.39 Aligned_cols=152 Identities=10% Similarity=0.047 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHH
Q 019303 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 115 (343)
+.++..+.+..+++.|++.|=.--.-......+.+ +++++.-.+++.|.-=.. ..++++...+.+ +.|+
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v-~avRe~vG~~~~L~vDaN---------~~w~~~~A~~~~-~~L~ 264 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRC-RLAREVIGPDNKLMIDAN---------QRWDVPEAIEWV-KQLA 264 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH-HHHHHhcCCCCeEEEECC---------CCCCHHHHHHHH-HHhh
Confidence 44556666777778899986542111110111222 344442223333322221 234555443322 2333
Q ss_pred HcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhC---Cc-cEEeCCCCcHHHHHHHhcCCCeeEEeeecccccc-chhh
Q 019303 116 RLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEG---KI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEA 190 (343)
Q Consensus 116 ~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G---~i-r~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~ 190 (343)
. .++.++-.|-+.. -++.+.+|++.. .| -..|=|.++...++++++...++++|+..+-.-. ..-.
T Consensus 265 ~-----~~l~~iEEP~~~~----d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~~ 335 (415)
T cd03324 265 E-----FKPWWIEEPTSPD----DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNENL 335 (415)
T ss_pred c-----cCCCEEECCCCCC----cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHH
Confidence 3 3555666664332 466666777764 23 3456667888899999888888999987765432 1135
Q ss_pred cchHHHHHcCCeEEecc
Q 019303 191 EIVPTCRELGIGIVAYS 207 (343)
Q Consensus 191 ~l~~~~~~~gi~v~a~s 207 (343)
.+...|+++|+.+..++
T Consensus 336 kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 336 AVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHcCCeEEEcC
Confidence 78999999999987763
No 230
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=24.59 E-value=84 Score=20.81 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=19.2
Q ss_pred cccCc---eeeCCCCCceeCcceeccccC
Q 019303 2 AGAVK---RIKLGSQGLEVSAQGLGCMGM 27 (343)
Q Consensus 2 ~~~m~---~~~Lg~tg~~vs~lglG~~~~ 27 (343)
+|+|+ .+.|+.+|+.|+.+-+||+.-
T Consensus 9 aqalPfs~~~~l~dtglrvpv~KmGtgwe 37 (61)
T PF15221_consen 9 AQALPFSLGRALRDTGLRVPVIKMGTGWE 37 (61)
T ss_pred hhhCCccccccccccccCCceeeecchHH
Confidence 34555 346889999999999888653
No 231
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=24.46 E-value=88 Score=19.93 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcC
Q 019303 251 VNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALS 297 (343)
Q Consensus 251 l~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~ 297 (343)
++++|+..|+|++.+.- +|+.+. -+...+.+++.+.++.++
T Consensus 2 i~dIA~~agvS~~TVSr--~ln~~~----~vs~~tr~rI~~~a~~lg 42 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSR--VLNGPP----RVSEETRERILEAAEELG 42 (46)
T ss_dssp HHHHHHHHTSSHHHHHH--HHTTCS----SSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHH--HHhCCC----CCCHHHHHHHHHHHHHHC
Confidence 57899999999987654 444432 344555666666665544
No 232
>PRK06740 histidinol-phosphatase; Validated
Probab=24.36 E-value=5.9e+02 Score=23.77 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCC-----CC--------CH----HHHHHHHHHHHHhCCccEEe
Q 019303 108 AACEASLKRLDIDCIDLYYQHRIDT-----RV--------PI----EVTIGELKKLVEEGKIKYIG 156 (343)
Q Consensus 108 ~~~~~sL~~L~~d~iDl~~lH~p~~-----~~--------~~----~~~~~~l~~l~~~G~ir~iG 156 (343)
..+++.|+....||+ +..+|..+. .. +. +.-.+.+.++.+.|++..||
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIg 220 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIA 220 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEee
Confidence 346666777777887 788897541 11 11 22467888888898877766
No 233
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=24.09 E-value=3.1e+02 Score=24.40 Aligned_cols=84 Identities=20% Similarity=0.147 Sum_probs=53.6
Q ss_pred cEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCCCeeEEeeecccccc-chhhcchHHHHHcCC
Q 019303 123 DLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGI 201 (343)
Q Consensus 123 Dl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi 201 (343)
++.++-.|-+ .+-++.+.++. .+.=-..|=|-++...+..+++...++++|+..+..-. ..-..+...|+.+|+
T Consensus 154 ~i~~iEqP~~----~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi 228 (263)
T cd03320 154 RIEYIEQPLP----PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGI 228 (263)
T ss_pred CCceEECCCC----hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCC
Confidence 4445555433 23455666666 33333556666777778888877778888887665331 122578999999999
Q ss_pred eEEecccccc
Q 019303 202 GIVAYSPLGR 211 (343)
Q Consensus 202 ~v~a~spl~~ 211 (343)
.++..+-+..
T Consensus 229 ~~~~~~~~es 238 (263)
T cd03320 229 PAVVSSALES 238 (263)
T ss_pred CEEEEcchhh
Confidence 9987654443
No 234
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=23.72 E-value=6.1e+02 Score=23.72 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=11.7
Q ss_pred HHHHHcCCCeEeCcCCC
Q 019303 45 HHAINSGITLLDTSDIY 61 (343)
Q Consensus 45 ~~A~~~Gi~~~DTA~~Y 61 (343)
+.|.++|+..++---..
T Consensus 159 ~~a~~aGfDgVeih~ah 175 (338)
T cd02933 159 RNAIEAGFDGVEIHGAN 175 (338)
T ss_pred HHHHHcCCCEEEEcccc
Confidence 45567899999874433
No 235
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=23.72 E-value=1.5e+02 Score=24.92 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeC
Q 019303 108 AACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGL 157 (343)
Q Consensus 108 ~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGv 157 (343)
.+++++|..-. -+|++++.........+-+..|..++.+|++|++-+
T Consensus 67 ~~f~~~L~e~s---n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nL 113 (173)
T PF10171_consen 67 QSFEDALLEAS---NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNL 113 (173)
T ss_pred HHHHHHHHHHh---CceeccChhhcCchHHHHHHHHHHHhcCCceEEeee
Confidence 44555555543 577888766555555678999999999999998644
No 236
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=23.47 E-value=3.7e+02 Score=21.95 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcCCCeEeCcC
Q 019303 37 ESDMIALIHHAINSGITLLDTSD 59 (343)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DTA~ 59 (343)
.|...+.++.|++.|.+.|++--
T Consensus 12 pent~~a~~~a~~~g~~~iE~Dv 34 (189)
T cd08556 12 PENTLAAFRKALEAGADGVELDV 34 (189)
T ss_pred CchHHHHHHHHHHcCCCEEEEEe
Confidence 46788899999999999887554
No 237
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=23.45 E-value=5.1e+02 Score=22.77 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc
Q 019303 36 PESDMIALIHHAINSGITLLDTS 58 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA 58 (343)
-.|.....++.|++.|...|.+=
T Consensus 20 ~pENT~~Af~~A~~~G~d~vE~D 42 (249)
T PRK09454 20 APENTLAAIDVGARYGHRMIEFD 42 (249)
T ss_pred CChHHHHHHHHHHHcCCCEEEEE
Confidence 35788899999999999988653
No 238
>PTZ00413 lipoate synthase; Provisional
Probab=22.88 E-value=6.9e+02 Score=24.07 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCC----CCcHHHHHHHHhhcCC--CCCEEEEeecccccCCCCCCCCCCHHHHHH
Q 019303 35 KPESDMIALIHHAINSGITLLDTSDIYG----PHTNEILLGKALKGGM--RERVELATKFGISFADGKREIRGDPAYVRA 108 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg----~g~sE~~lG~al~~~~--R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 108 (343)
.|.++..++-+++.+.|++|+=.+...+ +|.++. +.+.++..+ ..++-|..=++-. ..+.+.+
T Consensus 177 lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~-~a~~I~~Ir~~~p~~~IevligDf--------~g~~e~l-- 245 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASH-VARCVELIKESNPELLLEALVGDF--------HGDLKSV-- 245 (398)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHH-HHHHHHHHHccCCCCeEEEcCCcc--------ccCHHHH--
Confidence 4778888888888899998775555544 233443 344554421 2345555444311 1123222
Q ss_pred HHHHHHHHcCCCcccEEEeecCCC-----------CCCHHHHHHHHHHHHHh--CCc--c---EEeCCCCcHHHHHHHhc
Q 019303 109 ACEASLKRLDIDCIDLYYQHRIDT-----------RVPIEVTIGELKKLVEE--GKI--K---YIGLSEASASTIRRAHA 170 (343)
Q Consensus 109 ~~~~sL~~L~~d~iDl~~lH~p~~-----------~~~~~~~~~~l~~l~~~--G~i--r---~iGvSn~~~~~l~~~~~ 170 (343)
+.|..-| +|. +-|+.+. ...+++.++.|+..++. |.| . -+|+..-..+.++-+..
T Consensus 246 ---~~L~eAG---~dv-ynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~d 318 (398)
T PTZ00413 246 ---EKLANSP---LSV-YAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRD 318 (398)
T ss_pred ---HHHHhcC---CCE-EecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHHH
Confidence 2233334 443 3355321 23578889999988875 333 2 14655544444333322
Q ss_pred C--CCeeEEee-ecc-------cccc----chhhcchHHHHHcCCeEEecccccc
Q 019303 171 V--HPITAVQL-EWS-------LWSR----DVEAEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 171 ~--~~~~~~q~-~~n-------~~~~----~~~~~l~~~~~~~gi~v~a~spl~~ 211 (343)
. ..++++.+ +|= ++.+ ..-+.+-+.+.+.|...++-+||-+
T Consensus 319 LrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 319 LRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 2 33333322 111 1111 1113566778888988888888865
No 239
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=22.81 E-value=6.5e+02 Score=23.76 Aligned_cols=26 Identities=4% Similarity=0.089 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCC
Q 019303 35 KPESDMIALIHHAINSGITLLDTSDI 60 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~ 60 (343)
.+.++..++++..-+.||..|+....
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~p 44 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGFP 44 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 36688888888888999999997643
No 240
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=22.79 E-value=80 Score=27.00 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=41.4
Q ss_pred HHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCC-CCcHHHHHHHhcCCCeeEEeeeccc
Q 019303 113 SLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEWSL 183 (343)
Q Consensus 113 sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~n~ 183 (343)
.+..+|.||+=+.+ +|..... -..+...++.+.-.-+.+||. |.+.+.+.+......++++|+.-+-
T Consensus 14 ~~~~~g~d~~Gfi~--~~~S~R~--v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIF--YPKSPRY--VSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHcCCCEEeeec--CCCCCCc--cCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 45778999988763 3432221 224445555555554588875 5678888888888899999985443
No 241
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=22.77 E-value=1.9e+02 Score=26.56 Aligned_cols=66 Identities=24% Similarity=0.179 Sum_probs=50.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHHHhhcC--------C--CCCHHHHHHHHHhhccC
Q 019303 250 RVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALS--------V--KLTLEEMVELESIASAD 315 (343)
Q Consensus 250 ~l~~~a~~~g~s~aqlal~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~--------~--~Lt~e~~~~l~~~~~~~ 315 (343)
+.+++++++++...---+.=++..+.+.++++.+.+..|.+-.++++. . .+|.+|.++|-++.++.
T Consensus 42 ~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 42 RAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred HHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 577888999987111125557778888899999999888888888775 2 37889999888888764
No 242
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=22.67 E-value=1e+02 Score=29.27 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=15.1
Q ss_pred hhcchHHHHHcCCeEEecc
Q 019303 189 EAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 189 ~~~l~~~~~~~gi~v~a~s 207 (343)
.+.+++.|+++||.|+.-+
T Consensus 60 L~~~L~~~~~~gIkvI~Na 78 (362)
T PF07287_consen 60 LRPLLPAAAEKGIKVITNA 78 (362)
T ss_pred HHHHHHHHHhCCCCEEEeC
Confidence 3578889999999988753
No 243
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=22.59 E-value=5.4e+02 Score=25.18 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHc--CCCeEe-CcCCCCCCcHHHHHHHHhhcCCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHH
Q 019303 36 PESDMIALIHHAINS--GITLLD-TSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEA 112 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~--Gi~~~D-TA~~Yg~g~sE~~lG~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 112 (343)
+.+...+-++...+. |++.|- ..+.+.. +.+.+-+.++...+..+....-.. .+.+++.+..--+.
T Consensus 228 s~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~--~~~~~~~l~~~l~~~~i~~~~~~~---------~~~~~e~l~~l~~a 296 (472)
T TIGR03471 228 SAESVIEEVKYALENFPEVREFFFDDDTFTD--DKPRAEEIARKLGPLGVTWSCNAR---------ANVDYETLKVMKEN 296 (472)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEeCCCCCC--CHHHHHHHHHHHhhcCceEEEEec---------CCCCHHHHHHHHHc
Q ss_pred HHHHc--CCCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccE----EeCCCCcHHHHHHHhcC-CCeeEEeeeccccc
Q 019303 113 SLKRL--DIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKY----IGLSEASASTIRRAHAV-HPITAVQLEWSLWS 185 (343)
Q Consensus 113 sL~~L--~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~ 185 (343)
-+.++ |++..|==.+.........+++.++++.+++.|.--. +|+-+.+.+.+++.++. .......+.++++.
T Consensus 297 G~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~l~ 376 (472)
T TIGR03471 297 GLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLAA 376 (472)
T ss_pred CCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeeeecc
Q ss_pred cchhhcchHHHHHcCC
Q 019303 186 RDVEAEIVPTCRELGI 201 (343)
Q Consensus 186 ~~~~~~l~~~~~~~gi 201 (343)
.-+...+.+.++++|+
T Consensus 377 P~PGT~l~~~~~~~g~ 392 (472)
T TIGR03471 377 PYPGTELYDQAKQNGW 392 (472)
T ss_pred cCCCcHHHHHHHHCCC
No 244
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.56 E-value=1.8e+02 Score=21.81 Aligned_cols=30 Identities=27% Similarity=0.199 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 019303 242 EHNKKLFERVNEIATRKGCTPSQLALAWVH 271 (343)
Q Consensus 242 ~~~~~~~~~l~~~a~~~g~s~aqlal~w~l 271 (343)
+.+..+.....++|++.|+|+.++.-.+.-
T Consensus 44 ~~N~~R~~~Y~~iA~~ng~t~~~V~~~~a~ 73 (95)
T PF07027_consen 44 AINADRRALYQEIAKKNGITVEQVAATAAQ 73 (95)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 355667788999999999999998876653
No 245
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=22.42 E-value=5e+02 Score=22.25 Aligned_cols=132 Identities=10% Similarity=0.066 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc----------CCCCCC--cHHHHHHHHhhcCC-CCCEEEEeecccccCCCCCCCCCC
Q 019303 36 PESDMIALIHHAINSGITLLDTS----------DIYGPH--TNEILLGKALKGGM-RERVELATKFGISFADGKREIRGD 102 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA----------~~Yg~g--~sE~~lG~al~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 102 (343)
+.++..+..+.+.+.|+..||-- +.||.. ..-+.+-+.++... .-.+-|+.|+...+ ...
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~-------~~~ 137 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW-------DDE 137 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc-------CCc
Confidence 56777788888888999999863 335531 12233444444321 11145666664321 111
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeecCCCCC--CHHHHHHHHHHHHHhCCccEEeCCCC-cHHHHHHHhcCCCeeEEee
Q 019303 103 PAYVRAACEASLKRLDIDCIDLYYQHRIDTRV--PIEVTIGELKKLVEEGKIKYIGLSEA-SASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 103 ~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~--~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~ 179 (343)
+...+ +-+.|+.+|+ |.+.+|...... .....|+.+.++++.-.+.-++..+. +.+++.++++....+.+++
T Consensus 138 -~~~~~-~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 138 -EETLE-LAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred -hHHHH-HHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEE
Confidence 12322 3334556675 555667643211 00123555566666555555555543 5566666655544555544
No 246
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=22.41 E-value=84 Score=27.97 Aligned_cols=26 Identities=12% Similarity=0.346 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH
Q 019303 245 KKLFERVNEIATRKGCTPSQLALAWV 270 (343)
Q Consensus 245 ~~~~~~l~~~a~~~g~s~aqlal~w~ 270 (343)
.++++++..||..|++++.+++..|-
T Consensus 9 ~~vl~kl~slc~~~~ls~edL~~kWe 34 (253)
T PF08418_consen 9 PDVLEKLQSLCRLYNLSAEDLFYKWE 34 (253)
T ss_dssp HHHHHHHHTHHHHST--HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45778999999999999999999884
No 247
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=22.35 E-value=7.1e+02 Score=24.00 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhC--CccEEeC--CCCcHHHHHHHhcCCCeeE
Q 019303 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEG--KIKYIGL--SEASASTIRRAHAVHPITA 176 (343)
Q Consensus 101 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G--~ir~iGv--Sn~~~~~l~~~~~~~~~~~ 176 (343)
++++...+-+.+.++.+ +++++-.|-+..+ ++.+.+|.+.- .+.-+|= ..++++.++++++....++
T Consensus 261 ~t~~eai~~~~~l~e~~-----~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKKY-----PIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHhC-----CcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 45555555555554443 5777777755443 66666677663 4544332 2257899999988877888
Q ss_pred Eeeeccccccc-hhhcchHHHHHcCCeEEe
Q 019303 177 VQLEWSLWSRD-VEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 177 ~q~~~n~~~~~-~~~~l~~~~~~~gi~v~a 205 (343)
+|+..+-.-.- .-.++...|+++|+.++.
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 88877754321 124788999999999864
No 248
>PF13518 HTH_28: Helix-turn-helix domain
Probab=22.33 E-value=1.1e+02 Score=19.25 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 019303 250 RVNEIATRKGCTPSQLALAWVHH 272 (343)
Q Consensus 250 ~l~~~a~~~g~s~aqlal~w~l~ 272 (343)
.+.++|.++|+|..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 4667888888888775 667643
No 249
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=22.32 E-value=2.4e+02 Score=27.06 Aligned_cols=68 Identities=15% Similarity=0.076 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhCCc--c-EEeCCCCcHHHHHHHhcCCCeeEEeeecccccc-chhhcchHHHHHcCCeEEec
Q 019303 139 TIGELKKLVEEGKI--K-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAY 206 (343)
Q Consensus 139 ~~~~l~~l~~~G~i--r-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~ 206 (343)
-++.+.+|++.-.+ . .-|-+.++...++.+++...++++|+...-.-. ..-..+...|+.+|+.++.+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 46778888877542 2 337788889999999888888999987765432 11247899999999998664
No 250
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=22.25 E-value=5.4e+02 Score=22.56 Aligned_cols=25 Identities=8% Similarity=0.198 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCC
Q 019303 36 PESDMIALIHHAINSGITLLDTSDI 60 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~ 60 (343)
+.++..++++...+.|+..|+....
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~ 41 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSG 41 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccC
Confidence 6788999999999999999998753
No 251
>PRK15108 biotin synthase; Provisional
Probab=22.25 E-value=6.6e+02 Score=23.57 Aligned_cols=108 Identities=11% Similarity=0.039 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCC-CCCHHHHHHHHHHHHHhCCccEEeCCC--CcHHHHHHHhcCC-----
Q 019303 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDT-RVPIEVTIGELKKLVEEGKIKYIGLSE--ASASTIRRAHAVH----- 172 (343)
Q Consensus 101 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~-~~~~~~~~~~l~~l~~~G~ir~iGvSn--~~~~~l~~~~~~~----- 172 (343)
.+++.|.+.++. ...+|+..+ ++...+.++ ...++.+.+.+..+++.|. .+.+|+ .+.+.++++.+..
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 688888887765 567899888 333433233 3446667777777787664 344554 5677777765431
Q ss_pred -CeeEEeeeccccc--cchh--hcchHHHHHcCCeEEeccccccc
Q 019303 173 -PITAVQLEWSLWS--RDVE--AEIVPTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 173 -~~~~~q~~~n~~~--~~~~--~~l~~~~~~~gi~v~a~spl~~G 212 (343)
.+++..--|.-+. ...+ -+.++.+++.|+.+.+...++-|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 1112111111111 1111 25677788888876555555443
No 252
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=22.21 E-value=6.5e+02 Score=23.52 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc
Q 019303 35 KPESDMIALIHHAINSGITLLDTS 58 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA 58 (343)
.+.++..+++...-+.|+..|+.+
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 367888888888889999999995
No 253
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=21.92 E-value=3.3e+02 Score=26.16 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCccEEeCCCCcHHHHHHHhcC-CCeeEEeeeccccccc-hhhcchHHHHHcCCeEEe
Q 019303 140 IGELKKLVEEGKIKYIGLSEASASTIRRAHAV-HPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 140 ~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~l~~~~~~~gi~v~a 205 (343)
+..+..+.+.+.++.+-+...+.+.+++++.. .+..++..+-|+.-+. .-+++.+.|+++|+.++.
T Consensus 113 ~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIv 180 (405)
T PRK08776 113 WRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVV 180 (405)
T ss_pred HHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEE
Confidence 33333433333344444433445555555432 2333444444443322 124566677777766664
No 254
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=21.71 E-value=3.5e+02 Score=22.23 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEe-ccCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhh
Q 019303 247 LFERVNEIATRKGCTPSQLALAWVHHQGDDVCP-IPGTTKVENCNQNIKALSVKLTLEEMVELESIA 312 (343)
Q Consensus 247 ~~~~l~~~a~~~g~s~aqlal~w~l~~~~v~~~-i~g~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~ 312 (343)
..+.+.++|+ .|.+|+|+-+.-=-++|...+- |.|.+=.+-|++|=- .-+++++....+..+.
T Consensus 33 ve~~I~~lak-kG~~pSqIG~~LRD~~gip~Vk~vtG~ki~~iLk~~gl--~p~iPEDL~~L~~ri~ 96 (151)
T PRK08561 33 IEELVVELAK-QGYSPSMIGIILRDQYGIPDVKLITGKKITEILEENGL--APEIPEDLRNLIKKAV 96 (151)
T ss_pred HHHHHHHHHH-CCCCHHHhhhhHhhccCCCceeeeccchHHHHHHHcCC--CCCCcHHHHHHHHHHH
Confidence 3446667775 5899999988776666643332 344443333333221 2257777666665544
No 255
>PRK00077 eno enolase; Provisional
Probab=21.61 E-value=7.5e+02 Score=23.99 Aligned_cols=96 Identities=7% Similarity=0.020 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhC--CccEEeCC--CCcHHHHHHHhcCCCeeE
Q 019303 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEG--KIKYIGLS--EASASTIRRAHAVHPITA 176 (343)
Q Consensus 101 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G--~ir~iGvS--n~~~~~l~~~~~~~~~~~ 176 (343)
.+++...+.+.+.++.+ +++++-.|-+.. -++.+.+|.++- ++.-+|=- ..+++.++++++....++
T Consensus 261 ~s~~e~~~~~~~l~e~y-----~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDKY-----PIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhhC-----CcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 46666655555555553 577777775433 366667777764 56554433 246899999988888888
Q ss_pred Eeeeccccccc-hhhcchHHHHHcCCeEEe
Q 019303 177 VQLEWSLWSRD-VEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 177 ~q~~~n~~~~~-~~~~l~~~~~~~gi~v~a 205 (343)
+|+..+-.-.- .-.++...|+++|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 88877754321 124788999999998654
No 256
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=21.51 E-value=3e+02 Score=26.75 Aligned_cols=87 Identities=13% Similarity=0.149 Sum_probs=52.7
Q ss_pred HHHcCCCcccEEEeecCCC-CCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcC--------CCeeEEeeecccc
Q 019303 114 LKRLDIDCIDLYYQHRIDT-RVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV--------HPITAVQLEWSLW 184 (343)
Q Consensus 114 L~~L~~d~iDl~~lH~p~~-~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~--------~~~~~~q~~~n~~ 184 (343)
++.||++|. ++..|-. .... .+-...+-+.|-+..+|..+.+++++++.+.. .+|-+|-+ .++-
T Consensus 7 ~~~lgiryP---ii~gpMa~Giss---~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~ 79 (418)
T cd04742 7 KEDYGLRYA---YVAGAMARGIAS---AELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPD 79 (418)
T ss_pred HHHhCCCcc---EECCcccCCCCC---HHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCC
Confidence 466777664 3333322 1212 23334556679999999999999887665432 25666543 2332
Q ss_pred ccchhhcchHHHHHcCCeEEecc
Q 019303 185 SRDVEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 185 ~~~~~~~l~~~~~~~gi~v~a~s 207 (343)
....+..+++.|.++||.++..+
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~s 102 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEAS 102 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEec
Confidence 22224578999999999876654
No 257
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.51 E-value=6.8e+02 Score=23.44 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc
Q 019303 35 KPESDMIALIHHAINSGITLLDTS 58 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA 58 (343)
.+.++..++++..-+.||..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 367888899999999999999995
No 258
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.50 E-value=2.3e+02 Score=24.65 Aligned_cols=60 Identities=25% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCcc---EEeCCC-CcHHHHHHHhcC-CCeeEEeeeccccccchhhcchHHHHHcCCeEEe
Q 019303 138 VTIGELKKLVEEGKIK---YIGLSE-ASASTIRRAHAV-HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 138 ~~~~~l~~l~~~G~ir---~iGvSn-~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a 205 (343)
..++.+++++++-.-+ .||..+ .+.++++.+.+. ..| ++.+....+++++|+++||.++.
T Consensus 50 ~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~F--------ivsP~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 50 FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQF--------IVSPSFNRETAKICNLYQIPYLP 114 (213)
T ss_pred cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCE--------EECCCCCHHHHHHHHHcCCCEEC
No 259
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=21.48 E-value=3.1e+02 Score=27.55 Aligned_cols=73 Identities=21% Similarity=0.160 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCCCeeEE---eeeccccccchhhcchHHHHHcCCeEEecccc
Q 019303 134 VPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAV---QLEWSLWSRDVEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 134 ~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~---q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl 209 (343)
.+.+++.+.+.+.++..+|+.||+-.+...++.++++...+.++ |.-+++-.. -.-++..-..|.-+..-.|+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~---~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGA---IKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCch---hHHHHHHHhcCcEEECCCcH
Confidence 44678899999999999999999999999999888877554433 433323222 13344444455555554544
No 260
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=21.33 E-value=2.2e+02 Score=21.75 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=29.3
Q ss_pred CCCcHHHHHHHhcCCCeeEEeeeccccccchhhcchHHHHHcCCeEEecccc
Q 019303 158 SEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPL 209 (343)
Q Consensus 158 Sn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl 209 (343)
+.-+.+++..+....+++++-+--..-.+....++.++++++||++..+..-
T Consensus 37 ~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 37 SDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred ccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 3445566655554333444433222222223457889999999999876643
No 261
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=21.33 E-value=5.1e+02 Score=21.96 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHcCCCcccEEE-eecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcH--HHHHHHhcCCCeeEEeee
Q 019303 104 AYVRAACEASLKRLDIDCIDLYY-QHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASA--STIRRAHAVHPITAVQLE 180 (343)
Q Consensus 104 ~~i~~~~~~sL~~L~~d~iDl~~-lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~--~~l~~~~~~~~~~~~q~~ 180 (343)
+.....+...++..+..--.+++ +...........+.+.+..+++.|- .+++.++.. ..+..+.. .+++.+=+.
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l~~-~~~d~iKld 174 (240)
T cd01948 98 PDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYLKR-LPVDYLKID 174 (240)
T ss_pred cHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHHHh-CCCCEEEEC
Confidence 34556777888888866423322 2222233445568899999999998 566666532 22333332 345666555
Q ss_pred ccccccc--------hhhcchHHHHHcCCeEEecc
Q 019303 181 WSLWSRD--------VEAEIVPTCRELGIGIVAYS 207 (343)
Q Consensus 181 ~n~~~~~--------~~~~l~~~~~~~gi~v~a~s 207 (343)
.+.+..- .-..++..|+..|+.+++-.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 175 RSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred HHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 4443321 12468888999999987733
No 262
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=21.18 E-value=6.9e+02 Score=23.40 Aligned_cols=111 Identities=18% Similarity=0.148 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCcHHHHHHHH--------------------hhcCCCCCEEEEeecccccCC
Q 019303 35 KPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKA--------------------LKGGMRERVELATKFGISFAD 94 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~a--------------------l~~~~R~~~~i~tK~~~~~~~ 94 (343)
.+.+....+.++|-+.|+.+|=|.-.-. +=..+-+. +.+ ...-++|+|=.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~---svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~-~gkPvilStGm------ 142 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLE---SADFLEDLGVPRFKIPSGEITNAPLLKKIAR-FGKPVILSTGM------ 142 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHH---HHHHHHhcCCCEEEECcccccCHHHHHHHHh-cCCcEEEECCC------
Confidence 4677888999999999999986654221 11222111 111 22334444432
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCC-CCCHHH-HHHHHHHHHHhCCccEEeCCCCcHH
Q 019303 95 GKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDT-RVPIEV-TIGELKKLVEEGKIKYIGLSEASAS 163 (343)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~-~~~~~~-~~~~l~~l~~~G~ir~iGvSn~~~~ 163 (343)
.+.+.|..+++...+. |.+.-|+.++|+... ..+.++ -+.++..|++.=. .-||+|.|+..
T Consensus 143 ------atl~Ei~~Av~~i~~~-G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G 205 (329)
T TIGR03569 143 ------ATLEEIEAAVGVLRDA-GTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLG 205 (329)
T ss_pred ------CCHHHHHHHHHHHHHc-CCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCcc
Confidence 2678888888877543 432125999998753 233333 3667777776533 47999998754
No 263
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=21.17 E-value=5.9e+02 Score=22.62 Aligned_cols=66 Identities=11% Similarity=-0.034 Sum_probs=36.2
Q ss_pred HHHHHHhCCc-cEEeCCCCcHHHHHHHhcC-CCeeEEeeeccccccchhhcchHHHHHcCCeEEeccc
Q 019303 143 LKKLVEEGKI-KYIGLSEASASTIRRAHAV-HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSP 208 (343)
Q Consensus 143 l~~l~~~G~i-r~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 208 (343)
|.+..++|+. -.+.+...++..++.+... ..+.++=+++++++...-..++..++..|+.++..-|
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 3445556775 2233444455555554443 3444556677776543334566677777777666543
No 264
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=21.16 E-value=6.7e+02 Score=23.70 Aligned_cols=133 Identities=15% Similarity=0.074 Sum_probs=70.0
Q ss_pred HHHHHHHHhhc----CCCCCEEEEeecccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC----HH
Q 019303 66 NEILLGKALKG----GMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVP----IE 137 (343)
Q Consensus 66 sE~~lG~al~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~----~~ 137 (343)
.|+-|-+++++ ...+=++|.|-+.... --+++..-+++.-++.+. .++.+|.+....+ .+
T Consensus 58 ~~~kL~~~i~~~~~~~~P~~i~v~~sC~~~i---------IGdD~~~v~~~~~~~~~~---~vi~v~~~gf~~~~~~G~~ 125 (398)
T PF00148_consen 58 GEEKLREAIKEIAEKYKPKAIFVVTSCVPEI---------IGDDIEAVARELQEEYGI---PVIPVHTPGFSGSYSQGYD 125 (398)
T ss_dssp SHHHHHHHHHHHHHHHSTSEEEEEE-HHHHH---------TTTTHHHHHHHHHHHHSS---EEEEEE--TTSSSHHHHHH
T ss_pred chhhHHHHHHHHHhcCCCcEEEEECCCCHHH---------hCCCHHHHHHHhhcccCC---cEEEEECCCccCCccchHH
Confidence 55555666654 2456677877765432 122333444444555653 8889998876333 34
Q ss_pred HHHHHHHHHH-H------hCCccEEeCCCCc---HHHHHHHhcCCCeeEEeee----------------ccccccchh-h
Q 019303 138 VTIGELKKLV-E------EGKIKYIGLSEAS---ASTIRRAHAVHPITAVQLE----------------WSLWSRDVE-A 190 (343)
Q Consensus 138 ~~~~~l~~l~-~------~G~ir~iGvSn~~---~~~l~~~~~~~~~~~~q~~----------------~n~~~~~~~-~ 190 (343)
.++.+|.+.. + .+.|.-||.++.. .+.+.++++...+.++... +|+...... .
T Consensus 126 ~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~~ 205 (398)
T PF00148_consen 126 AALRALAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGGP 205 (398)
T ss_dssp HHHHHHHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHHH
T ss_pred HHHHHHHhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchhh
Confidence 5566655555 2 2568888999765 3456666666555444332 233222111 1
Q ss_pred cchHHHHH-cCCeEEe-ccccc
Q 019303 191 EIVPTCRE-LGIGIVA-YSPLG 210 (343)
Q Consensus 191 ~l~~~~~~-~gi~v~a-~spl~ 210 (343)
...++.++ .|++++. -.|++
T Consensus 206 ~~a~~L~e~~giP~~~~~~p~G 227 (398)
T PF00148_consen 206 YAAEWLEERFGIPYLYFPSPYG 227 (398)
T ss_dssp HHHHHHHHHHT-EEEEEC-SBS
T ss_pred HHHHHHHHHhCCCeeecccccc
Confidence 24455555 4999988 45543
No 265
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.04 E-value=4.5e+02 Score=25.03 Aligned_cols=88 Identities=13% Similarity=0.151 Sum_probs=55.6
Q ss_pred EEEeecCCC------------CCCHHHHHHHHHH-HHHhCC---ccEEeCC--CCcHHHHHHH---hcCCCeeEEeeecc
Q 019303 124 LYYQHRIDT------------RVPIEVTIGELKK-LVEEGK---IKYIGLS--EASASTIRRA---HAVHPITAVQLEWS 182 (343)
Q Consensus 124 l~~lH~p~~------------~~~~~~~~~~l~~-l~~~G~---ir~iGvS--n~~~~~l~~~---~~~~~~~~~q~~~n 182 (343)
-+.||.+++ ..+++++++++.+ +.+.|+ |+++=+. |.+.+++.++ +...+..++-++||
T Consensus 237 aiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn 316 (368)
T PRK14456 237 AVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYN 316 (368)
T ss_pred EEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeec
Confidence 367888643 2366888888876 444552 4555443 3444444444 43345577888999
Q ss_pred ccccch--------hhcchHHHHHcCCeEEecccccc
Q 019303 183 LWSRDV--------EAEIVPTCRELGIGIVAYSPLGR 211 (343)
Q Consensus 183 ~~~~~~--------~~~l~~~~~~~gi~v~a~spl~~ 211 (343)
++.... -..+.+..+++|+.+......+.
T Consensus 317 ~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 317 SIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 875431 13567778899999998877764
No 266
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=21.02 E-value=7.9e+02 Score=24.03 Aligned_cols=111 Identities=14% Similarity=0.035 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeecCCCC-CCHHHHHHHHHHHHHhCCccEEeCCCCc---HHHHHHHhcCCCe
Q 019303 99 IRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR-VPIEVTIGELKKLVEEGKIKYIGLSEAS---ASTIRRAHAVHPI 174 (343)
Q Consensus 99 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~---~~~l~~~~~~~~~ 174 (343)
...+++.+.+.+++..+.++ .++.+-+-.|.+. ...+.+++.+..++++..=..+.+|+-. ++.++++.+. .+
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~-gv 134 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDL-GV 134 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHC-CC
Confidence 35788999999888877662 3566666675443 3345688899999988211256666533 6777777654 24
Q ss_pred eEEeeeccccccchhh---------------------------cchHHHHHcCCeEEeccccccc
Q 019303 175 TAVQLEWSLWSRDVEA---------------------------EIVPTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 175 ~~~q~~~n~~~~~~~~---------------------------~l~~~~~~~gi~v~a~spl~~G 212 (343)
+.+.+.++-++..... +-+..+.+.|+.+....++--|
T Consensus 135 d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 135 GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 5666665554422111 1244566778887776666544
No 267
>PTZ00081 enolase; Provisional
Probab=20.96 E-value=7.8e+02 Score=24.09 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHhC--CccEEeC--CCCcHHHHHHHhcCCCeeE
Q 019303 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEG--KIKYIGL--SEASASTIRRAHAVHPITA 176 (343)
Q Consensus 101 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G--~ir~iGv--Sn~~~~~l~~~~~~~~~~~ 176 (343)
.+++.+.+-+.+.++.+ +++++-.|-.. +-|+.+.+|.++- .+.-+|= +..+++.++++++....++
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~~----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFDQ----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCc----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 56676766666666665 45666666443 3466677777654 5655553 3456899999998888888
Q ss_pred Eeeecccccc-chhhcchHHHHHcCCeEEe
Q 019303 177 VQLEWSLWSR-DVEAEIVPTCRELGIGIVA 205 (343)
Q Consensus 177 ~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a 205 (343)
+|+..|-.-. ....++...|+++|+.++.
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 8888775432 1124788999999999876
No 268
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=20.81 E-value=1.2e+03 Score=26.15 Aligned_cols=94 Identities=12% Similarity=0.043 Sum_probs=56.6
Q ss_pred HHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHh-CCc--cEEeCCCCcHHHHHHHhcCCCeeEEeeeccccc--cchh
Q 019303 115 KRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE-GKI--KYIGLSEASASTIRRAHAVHPITAVQLEWSLWS--RDVE 189 (343)
Q Consensus 115 ~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~-G~i--r~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~--~~~~ 189 (343)
..-|-+.||+=.= ....+.++.+..+..+.+. -.+ --|-+-++.++.++.+++..+=..+-+..|... .. .
T Consensus 378 ve~GA~iIDVn~~---~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~IINsIs~~~g~~~-~ 453 (1178)
T TIGR02082 378 VENGAQILDINVD---YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIVNSISLKDGEER-F 453 (1178)
T ss_pred HHCCCCEEEECCC---CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEEEeCCCCCCCcc-H
Confidence 4668899998531 1223444445544444443 223 236677888999999988632223334555543 22 2
Q ss_pred hcchHHHHHcCCeEEeccccccc
Q 019303 190 AEIVPTCRELGIGIVAYSPLGRG 212 (343)
Q Consensus 190 ~~l~~~~~~~gi~v~a~spl~~G 212 (343)
..+++.|+++|..++.+.--..|
T Consensus 454 ~~~~~l~~~yga~vV~m~~de~G 476 (1178)
T TIGR02082 454 IETAKLIKEYGAAVVVMAFDEEG 476 (1178)
T ss_pred HHHHHHHHHhCCCEEEEecCCCC
Confidence 37999999999999987633333
No 269
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=20.74 E-value=1.4e+02 Score=27.40 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHcCCCcc--cEEEeecCCCCCCHHHHHHHHHHHHHhCCccE
Q 019303 103 PAYVRAACEASLKRLDIDCI--DLYYQHRIDTRVPIEVTIGELKKLVEEGKIKY 154 (343)
Q Consensus 103 ~~~i~~~~~~sL~~L~~d~i--Dl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~ 154 (343)
.+...+.+.+.+++||+.+- ..+.-+.+ ...+.+++.+.+|+++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 46677889999999998642 23333322 235678999999999999744
No 270
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=20.70 E-value=6.7e+02 Score=23.06 Aligned_cols=137 Identities=12% Similarity=0.068 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCC---------CCC---CcHHHHHHHHhhcC-CCCCEEEEeecccccCCCCCCCCCC
Q 019303 36 PESDMIALIHHAINSGITLLDTSDI---------YGP---HTNEILLGKALKGG-MRERVELATKFGISFADGKREIRGD 102 (343)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~---------Yg~---g~sE~~lG~al~~~-~R~~~~i~tK~~~~~~~~~~~~~~~ 102 (343)
+.++..+..+.+.+.|+..||.--. |+. ....+.+.+.++.. .+-.+-|+.|+...+.+ .
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-------~ 145 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-------A 145 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC-------C
Confidence 5677788888888899999987422 221 01224455555442 11235678887532211 1
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeecCCCCCC--HHHHHHHHHHHHHhCCccEEeCCC-CcHHHHHHHhcCCCeeEEee
Q 019303 103 PAYVRAACEASLKRLDIDCIDLYYQHRIDTRVP--IEVTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQL 179 (343)
Q Consensus 103 ~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~--~~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~~~q~ 179 (343)
...+ ..+-+.|+..|+ |.+.+|....... ..-.|+.+.++++.=.|--||... .+++++.++++....+.+++
T Consensus 146 ~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 146 HINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred cchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 1112 235556677785 5556675422111 123477777777776677777666 56778888876666777776
Q ss_pred eccc
Q 019303 180 EWSL 183 (343)
Q Consensus 180 ~~n~ 183 (343)
--.+
T Consensus 222 gR~~ 225 (319)
T TIGR00737 222 GRGA 225 (319)
T ss_pred Chhh
Confidence 4333
No 271
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=20.62 E-value=6.2e+02 Score=23.90 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCC-cHHHHHHHHhhcCCCCCE-EEEeecccccCCCCCCCCCCHHHHHHHHHH
Q 019303 35 KPESDMIALIHHAINSGITLLDTSDIYGPH-TNEILLGKALKGGMRERV-ELATKFGISFADGKREIRGDPAYVRAACEA 112 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g-~sE~~lG~al~~~~R~~~-~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 112 (343)
.+.++..+.++.+.+.|++-|=--..-+.- ..-+.+.+.++.. ++.+ .+...++ ..+.+.+ +
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~I-k~~~p~i~Iei~----------~lt~e~~-----~ 166 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLA-REYFSSLAIEVQ----------PLNEEEY-----K 166 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHH-HHhCCccccccc----------cCCHHHH-----H
Confidence 378889999999999999966432111111 1223455555542 1110 0111111 1344444 5
Q ss_pred HHHHcCCCcccEEE----------eecCCCCCCHHHHHHHHHHHHHhCC
Q 019303 113 SLKRLDIDCIDLYY----------QHRIDTRVPIEVTIGELKKLVEEGK 151 (343)
Q Consensus 113 sL~~L~~d~iDl~~----------lH~p~~~~~~~~~~~~l~~l~~~G~ 151 (343)
-|+..|++.+-+.+ +|-.......++.+++++.+++.|.
T Consensus 167 ~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~ 215 (366)
T TIGR02351 167 KLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGM 215 (366)
T ss_pred HHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 67888887765532 2222334568889999999999985
No 272
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=20.47 E-value=2.2e+02 Score=27.38 Aligned_cols=15 Identities=7% Similarity=0.153 Sum_probs=8.1
Q ss_pred cCCCCHHHHHHHHhh
Q 019303 281 PGTTKVENCNQNIKA 295 (343)
Q Consensus 281 ~g~~~~~~l~~nl~a 295 (343)
.|...+.|+-.++..
T Consensus 328 S~~~~pShVL~AmG~ 342 (386)
T COG1104 328 SGSLEPSHVLRAMGI 342 (386)
T ss_pred CCCCCccHHHHHcCC
Confidence 344456666665543
No 273
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=20.36 E-value=5.2e+02 Score=21.65 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHcCCCeEeCcCC-CCCCcHHHHHHHHhhcCCCCCEEEEeecc-cccC-CCCCCCCCCHHHHHHHHHHH
Q 019303 37 ESDMIALIHHAINSGITLLDTSDI-YGPHTNEILLGKALKGGMRERVELATKFG-ISFA-DGKREIRGDPAYVRAACEAS 113 (343)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DTA~~-Yg~g~sE~~lG~al~~~~R~~~~i~tK~~-~~~~-~~~~~~~~~~~~i~~~~~~s 113 (343)
....+..++.-+..|..+ +|... |+. +..|+ .+++.+++-.| +... ..........+.+...++..
T Consensus 94 Pa~lK~~iD~v~~~g~~~-~~~~g~~~~-------~~~L~---gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 162 (199)
T PF02525_consen 94 PAQLKGWIDRVFTPGFTF-YTPDGKYPS-------GGLLK---GKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPYLRGI 162 (199)
T ss_dssp -HHHHHHHHHHSHTTTSE-EETTSTTCG-------EESTT---TSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHHHHHH
T ss_pred ChhHHHHHHHhCcCCeee-ecccccccc-------ccccc---cccEEEEEcCCCChHHhcccCCCCCChhhhHHHHHHH
Confidence 366788889999999998 66553 321 01222 23454444444 3211 10001233567788889999
Q ss_pred HHHcCCCcccEEEeecCCCCCCHHHHHHHHHHHH
Q 019303 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLV 147 (343)
Q Consensus 114 L~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~ 147 (343)
++-+|.+.++.+.++........+..-++++++.
T Consensus 163 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (199)
T PF02525_consen 163 LKFCGIKDVESFSFEGVDNPDREEALEKALERAA 196 (199)
T ss_dssp HHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHH
T ss_pred HHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHH
Confidence 9999999999999998762222222334444443
No 274
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.32 E-value=8.3e+02 Score=24.03 Aligned_cols=130 Identities=18% Similarity=0.155 Sum_probs=69.9
Q ss_pred HHHHHHHHHHcCCCeEe--------CcCCCCCC----cHHHHHHHHhhcC-CCCCEEEEeecccccCCCCCCCCCCHHHH
Q 019303 40 MIALIHHAINSGITLLD--------TSDIYGPH----TNEILLGKALKGG-MRERVELATKFGISFADGKREIRGDPAYV 106 (343)
Q Consensus 40 ~~~~l~~A~~~Gi~~~D--------TA~~Yg~g----~sE~~lG~al~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~i 106 (343)
..++++.|+|+|---+- |...|..+ ..+++.+.++.-. -+..+.-+|... -....+
T Consensus 184 MaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va~ag~~iLqst~d~-----------~egaa~ 252 (579)
T COG3653 184 MAALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVARAGGRILQSTHDR-----------DEGAAA 252 (579)
T ss_pred HHHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHHHhcCceeEeeccc-----------cchHHH
Confidence 47889999999876666 66666543 2455556555321 233343333321 245566
Q ss_pred HHHHHHHHHHcC-CCcccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCCCe---eEEeeecc
Q 019303 107 RAACEASLKRLD-IDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPI---TAVQLEWS 182 (343)
Q Consensus 107 ~~~~~~sL~~L~-~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~---~~~q~~~n 182 (343)
.+.++++-+.-+ ...+-+.+.|.-+. .-..+|++.+....++++.....+ ++.-...|
T Consensus 253 L~~l~~a~ri~~R~~~vr~v~s~~a~a------------------g~~n~~~a~~~lgl~~kaq~~G~pVg~~~~p~~a~ 314 (579)
T COG3653 253 LEALLEASRIGNRRKGVRMVMSHSADA------------------GSMNWGVAVFGLGLIEKAQLLGSPVGFDHYPYTAE 314 (579)
T ss_pred HHHHHHHHHhcCcccCceEEEeccccc------------------cccchhhhhhccchHHHHHHhCCcceeeecccccc
Confidence 677777777663 34577888886543 122455555555555555444222 22222223
Q ss_pred ccccchhhcchHHHHHcCC
Q 019303 183 LWSRDVEAEIVPTCRELGI 201 (343)
Q Consensus 183 ~~~~~~~~~l~~~~~~~gi 201 (343)
++.. .-++++.++.|.
T Consensus 315 ~ys~---~~~~p~~~e~g~ 330 (579)
T COG3653 315 LYSD---GIDLPVFEEFGA 330 (579)
T ss_pred hhcc---CCcchhhhhccc
Confidence 3332 245555555554
No 275
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.21 E-value=1e+03 Score=24.90 Aligned_cols=101 Identities=12% Similarity=0.042 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc--CCCCCCcHHHHHHHHhhcCCCCCEEEEe--ecccccC---CC-CCC--CCC--C
Q 019303 35 KPESDMIALIHHAINSGITLLDTS--DIYGPHTNEILLGKALKGGMRERVELAT--KFGISFA---DG-KRE--IRG--D 102 (343)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA--~~Yg~g~sE~~lG~al~~~~R~~~~i~t--K~~~~~~---~~-~~~--~~~--~ 102 (343)
.|.++..+.+....+.|+.-|=.+ ..|-+-..|..+++.+++.. .++-|++ ++++..+ .. ... ... -
T Consensus 136 lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~pi 214 (674)
T COG0145 136 LDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSPI 214 (674)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehHH
Confidence 588889999999999999977665 36667789999999999854 5666666 7776322 00 000 011 1
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeecCCCCCCHH
Q 019303 103 PAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIE 137 (343)
Q Consensus 103 ~~~i~~~~~~sL~~L~~d~iDl~~lH~p~~~~~~~ 137 (343)
-....+++++.|+.-|.+ ..++++-+...-.+.+
T Consensus 215 ~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl~~~~ 248 (674)
T COG0145 215 LRRYLEAVKDALKERGIK-ARLMVMQSDGGLVSAE 248 (674)
T ss_pred HHHHHHHHHHHHHhcCCC-ceeEEEecCCccccHH
Confidence 144557788888888865 5788888765444433
No 276
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=20.12 E-value=71 Score=25.70 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=14.6
Q ss_pred HHHHHHHHcCCCeEeCcCCCC
Q 019303 42 ALIHHAINSGITLLDTSDIYG 62 (343)
Q Consensus 42 ~~l~~A~~~Gi~~~DTA~~Yg 62 (343)
.-+...++.|||+||-=-.++
T Consensus 30 ~~i~~QL~~GiR~lDlrv~~~ 50 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVWDG 50 (146)
T ss_dssp HHHHHHHHTT--EEEEEEEEE
T ss_pred HhHHHHHhccCceEEEEEEcC
Confidence 457889999999999765544
No 277
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=20.08 E-value=1.1e+02 Score=18.56 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=13.1
Q ss_pred HHHHHHHHHhCCCHHHHHH
Q 019303 249 ERVNEIATRKGCTPSQLAL 267 (343)
Q Consensus 249 ~~l~~~a~~~g~s~aqlal 267 (343)
+.+..||.+++++..++.-
T Consensus 7 Dtl~~IA~~~~~~~~~l~~ 25 (44)
T PF01476_consen 7 DTLWSIAKRYGISVDELME 25 (44)
T ss_dssp --HHHHHHHTTS-HHHHHH
T ss_pred CcHHHHHhhhhhhHhHHHH
Confidence 3678899999999888643
No 278
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=20.06 E-value=1.6e+02 Score=24.64 Aligned_cols=63 Identities=22% Similarity=0.168 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCCc----ccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcC
Q 019303 107 RAACEASLKRLDIDC----IDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV 171 (343)
Q Consensus 107 ~~~~~~sL~~L~~d~----iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 171 (343)
+..++..++++|.+. ++.+.-.+ .......++.+.|+.|++.| ++-.-+||.+...++..++.
T Consensus 62 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 62 REALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 455666777777652 11111111 11223456788899999888 45556788777766655543
No 279
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.06 E-value=5.4e+02 Score=24.13 Aligned_cols=87 Identities=10% Similarity=0.076 Sum_probs=54.1
Q ss_pred EEeecCCC-----------CCCHHHHHHHHHHHHHhCC---ccEEeCC--CCcHHHHHHH---hcCCCeeEEeeeccccc
Q 019303 125 YYQHRIDT-----------RVPIEVTIGELKKLVEEGK---IKYIGLS--EASASTIRRA---HAVHPITAVQLEWSLWS 185 (343)
Q Consensus 125 ~~lH~p~~-----------~~~~~~~~~~l~~l~~~G~---ir~iGvS--n~~~~~l~~~---~~~~~~~~~q~~~n~~~ 185 (343)
+.||.+++ ..+++++++++.++.+.|+ ++++=+. |.+.++++++ +...+..++-++||+..
T Consensus 208 iSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~ 287 (336)
T PRK14470 208 ISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDAT 287 (336)
T ss_pred EecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCC
Confidence 67888744 2357788999999988754 2343332 3445555544 44345678889999854
Q ss_pred cch----h---hcchHHH--HHcCCeEEecccccc
Q 019303 186 RDV----E---AEIVPTC--RELGIGIVAYSPLGR 211 (343)
Q Consensus 186 ~~~----~---~~l~~~~--~~~gi~v~a~spl~~ 211 (343)
+.. + ..+.+.. +++||.+......+.
T Consensus 288 ~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G~ 322 (336)
T PRK14470 288 GRYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQ 322 (336)
T ss_pred CCccCCCHHHHHHHHHHHHHccCCeEEEEECCCCC
Confidence 321 1 2345556 367899888777654
No 280
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=20.03 E-value=8.3e+02 Score=24.15 Aligned_cols=124 Identities=9% Similarity=-0.055 Sum_probs=67.4
Q ss_pred cccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCCCeeEEeeeccccccch------------
Q 019303 121 CIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDV------------ 188 (343)
Q Consensus 121 ~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~------------ 188 (343)
..|+++.--|+...-..+++..+..+...+.|-.--.|..+...+.+.+......++-.++|+.....
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~ 159 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSP 159 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCH
Confidence 46888877665432234566777776666765444455566777766554433344445555433110
Q ss_pred --hhcchHHHHHcCCeEEeccccccccCCCCCCCCCCCCchhhhhhccccchhhhHHHHHH-HHHHHHHHHHhCCCHHHH
Q 019303 189 --EAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKL-FERVNEIATRKGCTPSQL 265 (343)
Q Consensus 189 --~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~a~~~g~s~aql 265 (343)
-+.+.+++...|-.++.......|++. ...+.. +.+...++++.++|+.++
T Consensus 160 e~~~~~~~~~~~lG~~~v~~~k~~~gfi~--------------------------nrl~~a~~~EA~~L~~~g~~s~~~i 213 (495)
T PRK07531 160 ETIRRAKEILREIGMKPVHIAKEIDAFVG--------------------------DRLLEALWREALWLVKDGIATTEEI 213 (495)
T ss_pred HHHHHHHHHHHHcCCEEEeecCCCcchhH--------------------------HHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 123455566666554444434444433 111222 355666778888998877
Q ss_pred HHHHH
Q 019303 266 ALAWV 270 (343)
Q Consensus 266 al~w~ 270 (343)
--...
T Consensus 214 d~~~~ 218 (495)
T PRK07531 214 DDVIR 218 (495)
T ss_pred HHHHh
Confidence 64444
No 281
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=20.01 E-value=3.4e+02 Score=23.23 Aligned_cols=84 Identities=10% Similarity=0.022 Sum_probs=51.2
Q ss_pred cccEEEeecCCCCCCHHHHHHHHHHHHHhCCccEEeCCCCcHHHHHHHhcCCCeeEEeeecc-ccccchhhcchHHHHHc
Q 019303 121 CIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWS-LWSRDVEAEIVPTCREL 199 (343)
Q Consensus 121 ~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n-~~~~~~~~~l~~~~~~~ 199 (343)
-..+..+.++. .-+...+|.+.|- ..+-..-.+.+.|.+++......++-+... .........+++.|++.
T Consensus 22 ~~~V~~l~R~~-------~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~a 93 (233)
T PF05368_consen 22 GFSVRALVRDP-------SSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAA 93 (233)
T ss_dssp TGCEEEEESSS-------HHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecc-------chhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhcc
Confidence 35777777754 1223445666676 355666667888888887654433333322 11122346899999999
Q ss_pred CCeEEeccccccc
Q 019303 200 GIGIVAYSPLGRG 212 (343)
Q Consensus 200 gi~v~a~spl~~G 212 (343)
||..+.+|.++..
T Consensus 94 gVk~~v~ss~~~~ 106 (233)
T PF05368_consen 94 GVKHFVPSSFGAD 106 (233)
T ss_dssp T-SEEEESEESSG
T ss_pred ccceEEEEEeccc
Confidence 9999999988765
Done!