Query 019305
Match_columns 343
No_of_seqs 124 out of 170
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03661 UPF0121: Uncharacteri 100.0 1.7E-47 3.6E-52 360.3 22.8 210 121-337 24-236 (247)
2 KOG4002 Uncharacterized integr 100.0 1.1E-31 2.5E-36 249.7 16.8 202 123-338 40-249 (264)
3 PF12238 MSA-2c: Merozoite sur 81.3 8.3 0.00018 36.1 8.1 11 52-62 108-118 (205)
4 PF12238 MSA-2c: Merozoite sur 65.7 18 0.00039 33.9 6.2 13 46-59 82-94 (205)
5 PHA02624 large T antigen; Prov 38.1 69 0.0015 34.9 6.0 13 23-35 85-97 (647)
6 PF04173 DoxD: TQO small subun 36.8 1.5E+02 0.0033 26.9 7.1 36 260-295 68-103 (167)
7 PF07681 DoxX: DoxX; InterPro 29.1 98 0.0021 23.7 4.2 35 256-290 41-75 (85)
8 PF08404 Baculo_p74_N: Baculov 27.0 54 0.0012 32.4 2.8 33 32-69 242-274 (301)
9 PF10524 NfI_DNAbd_pre-N: Nucl 24.8 36 0.00078 24.1 0.8 13 47-59 31-43 (44)
10 PF04544 Herpes_UL20: Herpesvi 24.2 4.1E+02 0.0089 24.4 7.8 18 116-133 19-36 (179)
11 PF14618 DUF4452: Domain of un 22.9 2E+02 0.0043 26.2 5.4 19 8-26 40-58 (165)
12 PF13210 DUF4018: Domain of un 22.5 6E+02 0.013 23.3 8.3 74 250-323 86-166 (192)
13 KOG1734 Predicted RING-contain 21.3 3E+02 0.0066 27.2 6.6 78 126-209 104-194 (328)
14 smart00222 Sec7 Sec7 domain. D 20.8 1.1E+02 0.0023 27.8 3.4 59 2-60 58-119 (187)
No 1
>PF03661 UPF0121: Uncharacterised protein family (UPF0121); InterPro: IPR005344 Uncharacterised integral membrane protein family.; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.7e-47 Score=360.30 Aligned_cols=210 Identities=27% Similarity=0.427 Sum_probs=184.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHhHHHHHHHHhccCchHHHH
Q 019305 121 RQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQSIIATKDFIYFI 200 (343)
Q Consensus 121 ~~t~~F~~~awvl~~a~l~ilP~~~~~ls~~~Yr~allga~~s~~i~lyq~~g~p~~~n~~~~~~~lq~ll~ddn~qYLl 200 (343)
-++.+|..+.|+++++++|++|+.+....+.+||.+++|++++|||++||+++++++ .++++++++.|||+|||+
T Consensus 24 lq~~~f~~~~~~l~~~~~y~l~~~~~~~~~~~Y~~all~~a~t~~i~l~q~~~~~~~-----~~~~l~~ll~ddn~~YL~ 98 (247)
T PF03661_consen 24 LQFAWFLGHVFTLLCSLLYILPILFFSLAYSAYRKALLGAAATYAIVLYQRLPRFQF-----SRAYLQRLLLDDNFQYLL 98 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHhcccccc-----cHHHHHHHHhcCcHHHHH
Confidence 378899999999999999999997666666699999999999999999999987664 567999999999999999
Q ss_pred HHHHHHhhcccceehhhHHHHHHHHHHHHHHHHhccchHHHHH-HHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019305 201 YCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFSRSILYRK-YLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLL 279 (343)
Q Consensus 201 ~alifl~s~~p~~laLlP~~lfSlfHvatf~r~~l~~~~~~~~-~~~~~~~~V~~n~~~~m~l~A~~EI~l~~~LIl~lf 279 (343)
||++|++++ |++++|+|+++||++|+++|+++++.+...... +.+.+++||++|++++|+++|++||++++++|+++|
T Consensus 99 ~al~fl~~~-p~~~~llP~~lfSlfHv~ty~~~~l~~~~~~~~~~~~~i~~~v~~~~~~~m~~~A~~Ei~l~~~li~~lf 177 (247)
T PF03661_consen 99 YALIFLFSP-PITLALLPFFLFSLFHVATYLRKLLPPTGPNSSPLARSIISFVKQNNDKIMRLVANIEIFLLPLLIFMLF 177 (247)
T ss_pred HHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997 899999999999999999999998654211111 222356889999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhhhhhc-ccCCC-CccchhhHH
Q 019305 280 SWQRNIIQTFMYWQLLKLMYHAPVSAGYHQSVWAKIGRTVNPLV-YRYAP-FLNTPISAI 337 (343)
Q Consensus 280 t~~rSii~~fiY~~FLklRY~sp~~s~y~R~af~~l~~~id~~i-~r~~P-~l~~~i~~~ 337 (343)
++++||+++++|++|||+||++ ++|+|+|++|+++++++|+++ |+.|| ++++.+..+
T Consensus 178 ~~~~s~i~~~iY~~FLklRY~~-~~s~y~r~~f~~l~~~id~~v~hp~~P~~v~~~~~~~ 236 (247)
T PF03661_consen 178 FGRRSIILPFIYYQFLKLRYAS-SRSPYTRSAFAQLRVRIDGLVSHPSCPPFVRQVYHKA 236 (247)
T ss_pred HccchHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999996 469999999999999999999 77777 566665443
No 2
>KOG4002 consensus Uncharacterized integral membrane protein [Function unknown]
Probab=99.98 E-value=1.1e-31 Score=249.71 Aligned_cols=202 Identities=19% Similarity=0.344 Sum_probs=165.2
Q ss_pred hhhHHHHHHHHHHHHHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHhHHHHHHHHhccCchHHHHHH
Q 019305 123 TIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQSIIATKDFIYFIYC 202 (343)
Q Consensus 123 t~~F~~~awvl~~a~l~ilP~~~~~ls~~~Yr~allga~~s~~i~lyq~~g~p~~~n~~~~~~~lq~ll~ddn~qYLl~a 202 (343)
.+++.+..-.+.+++.|++|+.+...+. .++ .+++.+.+++.+++|+...- ...+.++++++.||||||++|+
T Consensus 40 s~L~alr~~~fy~s~~y~~~~~~f~~~~-~~~-~~l~na~t~al~l~qr~~~~-----~l~~~f~arli~eds~~Ylv~s 112 (264)
T KOG4002|consen 40 SVLYALRLSTFYFSVTYLIPLYGFGKIA-SQK-FFLANAATSALRLHQRLAMF-----ALNKLFLARLIIEDSVHYLVYS 112 (264)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHH-HHHHHhHhhhhhHHHHHhHH-----HHHHHHHHHHHHccchHHHHHH
Confidence 4444444445558888888886543322 255 78889999999999988643 2356799999999999999999
Q ss_pred HHHHhhcccceehhhHHHHHHHHHHHHHHHHhcc---c--hHHHHHHHHhHHHHHHhh-hhhHHHHHHHHHHHHHHHHHH
Q 019305 203 LSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFS---R--SILYRKYLEDACVWVESN-STTLSILTSHAEIGLGFLLII 276 (343)
Q Consensus 203 lifl~s~~p~~laLlP~~lfSlfHvatf~r~~l~---~--~~~~~~~~~~~~~~V~~n-~~~~m~l~A~~EI~l~~~LIl 276 (343)
++|++.+ |+.+.|+|+++|+++|+++|+++.+. . ++..+..+++ ++.++ .++++.++|+.||+++++++.
T Consensus 113 lifl~~~-p~~~sL~P~l~ya~lH~~ty~~kvL~~~~~ns~~~~~s~i~~---f~~q~~~q~~l~~va~~eifll~~l~~ 188 (264)
T KOG4002|consen 113 LIFLFLR-PFSFSLLPVLIYAVLHASTYLNKVLLVIGQNSSGFFLSMISK---FEAQYTLQNALKLVAFNEIFLLPRLFF 188 (264)
T ss_pred HHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999998 89999999999999999999999753 2 4555555554 23333 399999999999999999999
Q ss_pred HHHhcchhHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhhhhhccc-CC-CCccchhhHHh
Q 019305 277 SLLSWQRNIIQTFMYWQLLKLMYHAPVSAGYHQSVWAKIGRTVNPLVYR-YA-PFLNTPISAIQ 338 (343)
Q Consensus 277 ~lft~~rSii~~fiY~~FLklRY~sp~~s~y~R~af~~l~~~id~~i~r-~~-P~l~~~i~~~~ 338 (343)
++|.+++|++.+++|++||||||. +|+|+|++|++++.++|+++.| .| |+++..+..++
T Consensus 189 ~iF~~~gsll~~v~Y~~Fl~LRY~---rs~y~R~aFaq~rlrmd~~vs~~s~Ppfikrl~~~~k 249 (264)
T KOG4002|consen 189 LIFSGKGSLLAPVIYYRFLKLRYR---RSPYMRAAFAQLRLRMDALVSRPSCPPFIKRLWNGYK 249 (264)
T ss_pred HHHhccchhhhHhhHhhheeeeec---CChhHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 999999999999999999999997 9999999999999999999966 54 56776666554
No 3
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=81.32 E-value=8.3 Score=36.08 Aligned_cols=11 Identities=27% Similarity=0.745 Sum_probs=5.7
Q ss_pred HHHhhhhcCCC
Q 019305 52 RKFYQRYIDPD 62 (343)
Q Consensus 52 ~k~yk~~iDp~ 62 (343)
-||++.++|.+
T Consensus 108 v~~ck~Fl~~~ 118 (205)
T PF12238_consen 108 VKFCKDFLDSE 118 (205)
T ss_pred HHHHHHHhccc
Confidence 34555555544
No 4
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=65.71 E-value=18 Score=33.88 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhhhc
Q 019305 46 VVDHYKRKFYQRYI 59 (343)
Q Consensus 46 ~~~k~k~k~yk~~i 59 (343)
.++|. +||||+||
T Consensus 82 ~~~~~-~~YyKkhI 94 (205)
T PF12238_consen 82 GREKM-TKYYKKHI 94 (205)
T ss_pred cHHHH-HHHHHHhc
Confidence 34443 46888888
No 5
>PHA02624 large T antigen; Provisional
Probab=38.10 E-value=69 Score=34.92 Aligned_cols=13 Identities=23% Similarity=1.048 Sum_probs=9.3
Q ss_pred CCcchHHHhhhcC
Q 019305 23 NDPRWADYWSNIL 35 (343)
Q Consensus 23 ~d~~W~~Y~~nl~ 35 (343)
++..|++||+-..
T Consensus 85 ~~~~w~~ww~~f~ 97 (647)
T PHA02624 85 GTPEWEQWWEEFN 97 (647)
T ss_pred ccccHHHHHHHhh
Confidence 6678888876543
No 6
>PF04173 DoxD: TQO small subunit DoxD; InterPro: IPR007301 P97207 from SWISSPROT is a subunit of the terminal quinol oxidase present in the plasma membrane of Acidianus ambivalens, with calculated molecular mass of 20.4 kDa []. Thiosulphate:quinone oxidoreductase (TQO) is one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon A. ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=36.75 E-value=1.5e+02 Score=26.95 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 019305 260 SILTSHAEIGLGFLLIISLLSWQRNIIQTFMYWQLL 295 (343)
Q Consensus 260 m~l~A~~EI~l~~~LIl~lft~~rSii~~fiY~~FL 295 (343)
|.+.+.+|+..++.++++++|+=.++....+=..++
T Consensus 68 lv~ft~vE~~~Gl~LilGL~TRLaa~~~~~l~~~i~ 103 (167)
T PF04173_consen 68 LVVFTIVEIIFGLLLILGLFTRLAALVALGLALGIL 103 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566799999999999999998887766655555
No 7
>PF07681 DoxX: DoxX; InterPro: IPR011637 These proteins appear to have some sequence similarity with IPR007301 from INTERPRO but their function is unknown []. They are predicted inner membrane proteins.
Probab=29.14 E-value=98 Score=23.71 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 019305 256 STTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFM 290 (343)
Q Consensus 256 ~~~~m~l~A~~EI~l~~~LIl~lft~~rSii~~fi 290 (343)
-.-...+++..|+..++.++++++++-.++...++
T Consensus 41 ~~~~~~~~~~~E~~~gl~l~~G~~tr~aa~~~~~~ 75 (85)
T PF07681_consen 41 PGLFAYLAGIAELVGGLLLLLGLFTRLAALVLALF 75 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45566778899999999999999998777555443
No 8
>PF08404 Baculo_p74_N: Baculoviridae P74 N-terminal; InterPro: IPR013613 This domain is found at the N terminus of P74 occlusion-derived virus (ODV) envelope proteins which are required for oral infectivity. The envelope proteins are found in baculoviruses which are insect pathogens. The C terminus of P74 is anchored to the membrane whereas the N terminus is exposed to the virion surface. Furthermore P74 is unusual for a virus envelope protein as it lacks an N-terminal localisation signal sequence []. Also see IPR007663 from INTERPRO.
Probab=26.99 E-value=54 Score=32.44 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=24.0
Q ss_pred hhcCCCCCCCCChhHHHHHHHHHhhhhcCCCCcccCCC
Q 019305 32 SNILIPPHMAARSDVVDHYKRKFYQRYIDPDLVVESMS 69 (343)
Q Consensus 32 ~nl~~pp~~~~~~~~~~k~k~k~yk~~iDp~~~v~~~s 69 (343)
|++++||+..+..++++.|+ +++||++|++.+.
T Consensus 242 S~~LP~~p~~d~~~~L~~W~-----n~rD~~~d~~~E~ 274 (301)
T PF08404_consen 242 SPILPPPPEVDSEKTLEEWR-----NVRDPTFDLDFEV 274 (301)
T ss_pred CccCCCCCCCchHHHHHHHH-----HhcCCcCCCChhh
Confidence 46787777666666666664 5899999987665
No 9
>PF10524 NfI_DNAbd_pre-N: Nuclear factor I protein pre-N-terminus; InterPro: IPR019548 Nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF) [, ] (also known as TGGCA-binding proteins) are a family of vertebrate nuclear proteins which recognise and bind, as dimers, the palindromic DNA sequence 5'-TGGCANNNTGCCA-3'. CTF/NF-I binding sites are present in viral and cellular promoters and in the origin of DNA replication of Human adenovirus 2 (HAdV-2). The CTF/NF-I proteins were first identified as nuclear factor I, a collection of proteins that activate the replication of several Adenovirus serotypes (together with NF-II and NF-III) []. The family of proteins was also identified as the CTF transcription factors, before the NFI and CTF families were found to be identical []. The CTF/NF-I proteins are individually capable of activating transcription and DNA replication. In a given species, there are a large number of different CTF/NF-I proteins, generated both by alternative splicing and by the occurrence of four different genes. CTF/NF-1 proteins contain 400 to 600 amino acids. The N-terminal 200 amino-acid sequence, almost perfectly conserved in all species and genes sequenced, mediates site-specific DNA recognition, protein dimerisation and Adenovirus DNA replication. The C-terminal 100 amino acids contain the transcriptional activation domain. This activation domain is the target of gene expression regulatory pathways elicited by growth factors and it interacts with basal transcription factors and with histone H3 []. This entry represents the N terminus, of which 200 residues contain the DNA-binding and dimerisation domain, but also has an 8-47 residue highly conserved region 5' of this, whose function is not known. Deletion of the N-terminal 200 amino acids removes the DNA-binding activity, dimerisation-ability and the stimulation of adenovirus DNA replication [].
Probab=24.80 E-value=36 Score=24.08 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=9.5
Q ss_pred HHHHHHHHhhhhc
Q 019305 47 VDHYKRKFYQRYI 59 (343)
Q Consensus 47 ~~k~k~k~yk~~i 59 (343)
+.-=||||||++.
T Consensus 31 LQA~KRk~~Kkhe 43 (44)
T PF10524_consen 31 LQAAKRKHYKKHE 43 (44)
T ss_pred HHHHHHHHHHhcc
Confidence 3445899999874
No 10
>PF04544 Herpes_UL20: Herpesvirus egress protein UL20; InterPro: IPR007629 UL20 is predicted to be a transmembrane protein with multiple membrane spans. It is involved in the trans-cellular transport of enveloped virions, and is therefore important for viral egress. However, UL20 operates in different cellular compartments and different stages of egress in Suid herpesvirus 1 (Pseudorabies virus) and herpes simplex virus. This is thought to be due to differences in egress pathways between these two viruses [].; GO: 0019067 viral assembly, maturation, egress, and release
Probab=24.25 E-value=4.1e+02 Score=24.42 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=14.5
Q ss_pred cccccchhhhHHHHHHHH
Q 019305 116 SVRWDRQTIQFSVNAWVF 133 (343)
Q Consensus 116 ~~r~d~~t~~F~~~awvl 133 (343)
.+++..+++.|.+.+.++
T Consensus 19 ~P~Fs~~vv~f~~Sal~l 36 (179)
T PF04544_consen 19 RPVFSKYVVFFWISALVL 36 (179)
T ss_pred CCceeeehHHHHHHHHHH
Confidence 457778899998888887
No 11
>PF14618 DUF4452: Domain of unknown function (DUF4452)
Probab=22.94 E-value=2e+02 Score=26.15 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=15.6
Q ss_pred hHHHHHHHHhhccCCCCcc
Q 019305 8 SQKIKRIAAAAYDYDNDPR 26 (343)
Q Consensus 8 ~~~~~~~a~~~yD~~~d~~ 26 (343)
.-+.|.+|..+||-|+|-.
T Consensus 40 ~~R~rfea~RSFDlEDDlE 58 (165)
T PF14618_consen 40 AFRARFEAGRSFDLEDDLE 58 (165)
T ss_pred hhhhhhhhccccccccccc
Confidence 3467999999999999953
No 12
>PF13210 DUF4018: Domain of unknown function (DUF4018)
Probab=22.49 E-value=6e+02 Score=23.30 Aligned_cols=74 Identities=18% Similarity=0.342 Sum_probs=56.6
Q ss_pred HHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcC-----CCCChhHHHHHHHHHHhhhhh
Q 019305 250 VWVE--SNSTTLSILTSHAEIGLGFLLIISLLSWQRNIIQTFMYWQLLKLMYHA-----PVSAGYHQSVWAKIGRTVNPL 322 (343)
Q Consensus 250 ~~V~--~n~~~~m~l~A~~EI~l~~~LIl~lft~~rSii~~fiY~~FLklRY~s-----p~~s~y~R~af~~l~~~id~~ 322 (343)
-|.. ..+++.+++++-+-|+++-.+++-+|=.-|=++.-++|+.=|-.-|.- .-...=+-.+|.+.+.-.++-
T Consensus 86 fWlTg~NrnQqllRF~SIitIG~~S~l~~~vfPyIRlifsyi~~~VALGfGY~i~pl~saa~~kdt~d~w~nkG~l~~~~ 165 (192)
T PF13210_consen 86 FWLTGANRNQQLLRFISIITIGIMSILLVPVFPYIRLIFSYIVEVVALGFGYAINPLFSAAELKDTDDFWENKGHLKKPQ 165 (192)
T ss_pred HHhcccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHhcCccchhHHHHhcCCCCCCc
Confidence 4663 348899999999999999999888887777788888899999988861 112334667888888777766
Q ss_pred c
Q 019305 323 V 323 (343)
Q Consensus 323 i 323 (343)
+
T Consensus 166 i 166 (192)
T PF13210_consen 166 I 166 (192)
T ss_pred C
Confidence 6
No 13
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.26 E-value=3e+02 Score=27.21 Aligned_cols=78 Identities=14% Similarity=0.328 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHh-------cccccc--cChH----HHHHHHHHHHHHHHHHHHHHcCCCCcchhHhHHHHHHHHhc
Q 019305 126 FSVNAWVFVVAMLAIF-------PLIPRN--LSNR----AYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQSIIA 192 (343)
Q Consensus 126 F~~~awvl~~a~l~il-------P~~~~~--ls~~----~Yr~allga~~s~~i~lyq~~g~p~~~n~~~~~~~lq~ll~ 192 (343)
+++.+|.+.+++.+++ |+.+.- +-++ .|++++++.++.|...++...|-.-. +. +.+.-.+
T Consensus 104 rfl~~WlmF~~~tafi~~ka~rkp~~g~tpRlVYkwFl~lyklSy~~g~vGyl~im~~~~g~n~~--F~----~~~~~~m 177 (328)
T KOG1734|consen 104 RFLFCWLMFCGFTAFITLKALRKPISGDTPRLVYKWFLFLYKLSYLLGVVGYLAIMFAQFGLNFT--FF----YLKTTYM 177 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeE--Ee----ecchhHh
Confidence 4566788876666644 442111 1122 68888899999999999988874321 11 2233334
Q ss_pred cCchHHHHHHHHHHhhc
Q 019305 193 TKDFIYFIYCLSFVTSH 209 (343)
Q Consensus 193 ddn~qYLl~alifl~s~ 209 (343)
|-..-.++|++.+-...
T Consensus 178 d~gi~~lfyglYyGvlg 194 (328)
T KOG1734|consen 178 DFGISFLFYGLYYGVLG 194 (328)
T ss_pred hhhHHHHHHHHHHHhhh
Confidence 55666667766665443
No 14
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=20.82 E-value=1.1e+02 Score=27.75 Aligned_cols=59 Identities=10% Similarity=0.290 Sum_probs=44.4
Q ss_pred CCcchhhHHHHHHHHhhccCCC---CcchHHHhhhcCCCCCCCCChhHHHHHHHHHhhhhcC
Q 019305 2 GEEREDSQKIKRIAAAAYDYDN---DPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYID 60 (343)
Q Consensus 2 ~~~~~~~~~~~~~a~~~yD~~~---d~~W~~Y~~nl~~pp~~~~~~~~~~k~k~k~yk~~iD 60 (343)
|+.++.++++=++=.+.|||.+ |..=..+++.+.+|.....-+.+++.|=++||+.|-+
T Consensus 58 ~~~~~~~~~vL~~y~~~f~f~~~~i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~ 119 (187)
T smart00222 58 GEHDEFNRLVLHAFVDLFDFSAKDLDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPS 119 (187)
T ss_pred cCCChHHHHHHHHHHHhcCcCCCcHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCC
Confidence 3445666777677778999988 6788899999999955222277888889999998744
Done!