Query 019305
Match_columns 343
No_of_seqs 124 out of 170
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 14:02:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2km1_A Protein DRE2; yeast, an 33.5 5.9 0.0002 33.5 -1.1 24 34-57 12-35 (136)
2 2khf_A PLNJ; anti-microbial, b 25.5 20 0.00069 21.4 0.6 9 26-34 2-10 (26)
3 4dgw_B PRE-mRNA-splicing facto 22.2 36 0.0012 29.1 1.8 19 5-23 96-114 (152)
4 2k9p_A Pheromone alpha factor 14.0 4.2E+02 0.014 20.0 7.7 37 248-284 11-48 (80)
5 3dnx_A Uncharacterized protein 12.4 31 0.0011 29.7 -1.0 14 19-32 64-77 (153)
6 3rm1_A Protein S100-B; alpha-h 10.0 2.7E+02 0.0091 20.2 3.7 31 2-34 2-40 (92)
7 2fly_A Proadrenomedullin N-20 8.6 1.2E+02 0.0042 18.4 1.0 13 43-55 2-14 (26)
8 2lmt_A Calmodulin-related prot 8.2 5.7E+02 0.02 19.5 5.3 48 1-52 1-53 (148)
9 2hba_A BL17, 50S ribosomal pro 7.6 2.8E+02 0.0097 19.3 2.7 25 29-53 24-50 (52)
10 3lxr_F IPGB2; RHOA, GTPase, GE 7.3 1.9E+02 0.0065 25.6 2.0 21 45-66 155-175 (192)
No 1
>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}
Probab=33.50 E-value=5.9 Score=33.51 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.9
Q ss_pred cCCCCCCCCChhHHHHHHHHHhhh
Q 019305 34 ILIPPHMAARSDVVDHYKRKFYQR 57 (343)
Q Consensus 34 l~~pp~~~~~~~~~~k~k~k~yk~ 57 (343)
|++||.++++|+.++..|.+++|+
T Consensus 12 LL~~Psv~t~pe~le~~k~~~~~~ 35 (136)
T 2km1_A 12 LLIHPAVTTTPELVENTKAQAASK 35 (136)
T ss_dssp EEECHHHHTSHHHHHHHHHHHHHT
T ss_pred EecCCcccCCHHHHHHHHHhhhcc
Confidence 457999999999999999999996
No 2
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=25.48 E-value=20 Score=21.36 Aligned_cols=9 Identities=33% Similarity=1.501 Sum_probs=7.0
Q ss_pred chHHHhhhc
Q 019305 26 RWADYWSNI 34 (343)
Q Consensus 26 ~W~~Y~~nl 34 (343)
.|+.+|++|
T Consensus 2 awknfwssl 10 (26)
T 2khf_A 2 AWKNFWSSL 10 (26)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 488898875
No 3
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=22.18 E-value=36 Score=29.12 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=14.9
Q ss_pred chhhHHHHHHHHhhccCCC
Q 019305 5 REDSQKIKRIAAAAYDYDN 23 (343)
Q Consensus 5 ~~~~~~~~~~a~~~yD~~~ 23 (343)
.|++++.++++++++||.+
T Consensus 96 ~e~~~e~er~~fa~IDW~d 114 (152)
T 4dgw_B 96 HDKLVELCKIQFAAIPWDK 114 (152)
T ss_dssp HHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHhcCCccc
Confidence 3456666788999999986
No 4
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=13.95 E-value=4.2e+02 Score=20.01 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=25.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhc-chh
Q 019305 248 ACVWVESNSTTLSILTSHAEIGLGFLLIISLLSW-QRN 284 (343)
Q Consensus 248 ~~~~V~~n~~~~m~l~A~~EI~l~~~LIl~lft~-~rS 284 (343)
+..|++.+-..++...+.+=-.++.++++.++++ ||+
T Consensus 11 ld~~~~~~~~~~I~~G~~iGAs~llliil~lltkkrrs 48 (80)
T 2k9p_A 11 LQGLVNSTVTQAILFGVRSGAAALTLIVVWITSRSRKT 48 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 3467888777777777666666666666677776 455
No 5
>3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, protein structure initiative; HET: MSE; 1.94A {Silicibacter pomeroyi}
Probab=12.35 E-value=31 Score=29.67 Aligned_cols=14 Identities=29% Similarity=0.888 Sum_probs=11.8
Q ss_pred ccCCCCcchHHHhh
Q 019305 19 YDYDNDPRWADYWS 32 (343)
Q Consensus 19 yD~~~d~~W~~Y~~ 32 (343)
=||-.|.+|++|+.
T Consensus 64 aDFr~D~KW~~Y~~ 77 (153)
T 3dnx_A 64 ADFQADAKWQGYLE 77 (153)
T ss_dssp HHHHHTTTGGGGGG
T ss_pred HHhhcccchHHHHh
Confidence 37888999999965
No 6
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=10.03 E-value=2.7e+02 Score=20.20 Aligned_cols=31 Identities=10% Similarity=0.056 Sum_probs=20.2
Q ss_pred CCcchhhHHHHHHHHhhccCCCCc--------chHHHhhhc
Q 019305 2 GEEREDSQKIKRIAAAAYDYDNDP--------RWADYWSNI 34 (343)
Q Consensus 2 ~~~~~~~~~~~~~a~~~yD~~~d~--------~W~~Y~~nl 34 (343)
.+.+.+-+++ +++|..|| ++|- ..+..+.+.
T Consensus 2 ~~le~~~~~l-~~~F~~~D-~~dG~~g~Is~~EL~~~l~~~ 40 (92)
T 3rm1_A 2 SELEKAVVAL-IDVFHQYS-GREGDKHKLKKSELKELINNE 40 (92)
T ss_dssp CHHHHHHHHH-HHHHHHHH-TSSSSTTSBCHHHHHHHHHHH
T ss_pred ChHHHHHHHH-HHHHHHHc-cCCCCcCeECHHHHHHHHHHH
Confidence 3344444555 45999999 7654 577777773
No 7
>2fly_A Proadrenomedullin N-20 terminal peptide; alpha helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=8.63 E-value=1.2e+02 Score=18.39 Aligned_cols=13 Identities=31% Similarity=0.708 Sum_probs=9.5
Q ss_pred ChhHHHHHHHHHh
Q 019305 43 RSDVVDHYKRKFY 55 (343)
Q Consensus 43 ~~~~~~k~k~k~y 55 (343)
+.|+...|||||=
T Consensus 2 rld~~sefrKKwn 14 (26)
T 2fly_A 2 RLDVASEFRKKWN 14 (26)
T ss_pred CccccHHHHHHHH
Confidence 4677778888873
No 8
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=8.23 E-value=5.7e+02 Score=19.52 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=32.5
Q ss_pred CCCcchhhHHHHHHHHhhccCCCC-----cchHHHhhhcCCCCCCCCChhHHHHHHH
Q 019305 1 MGEEREDSQKIKRIAAAAYDYDND-----PRWADYWSNILIPPHMAARSDVVDHYKR 52 (343)
Q Consensus 1 ~~~~~~~~~~~~~~a~~~yD~~~d-----~~W~~Y~~nl~~pp~~~~~~~~~~k~k~ 52 (343)
|.+.++++-+.=+++|..||=++| ...+..+..+-..|. .+.+..+-+
T Consensus 1 Ms~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~----~~~~~~~~~ 53 (148)
T 2lmt_A 1 MSELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPT----EAELQDLIA 53 (148)
T ss_dssp CCSCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCCC----HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCch----HHHHHHHHH
Confidence 666666543333579999999988 578888888876665 455544443
No 9
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=7.59 E-value=2.8e+02 Score=19.26 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=20.2
Q ss_pred HHhhhcCCCCCCC--CChhHHHHHHHH
Q 019305 29 DYWSNILIPPHMA--ARSDVVDHYKRK 53 (343)
Q Consensus 29 ~Y~~nl~~pp~~~--~~~~~~~k~k~k 53 (343)
-|-.|-++|..++ .+++.+.+++.+
T Consensus 24 GYaRN~LiP~g~A~~AT~~n~~~~~~~ 50 (52)
T 2hba_A 24 GYANNFLFKQGLAIEATPANLKALEAQ 50 (52)
T ss_dssp HHHHHTTTTTTSEEECCHHHHHHHHHH
T ss_pred CceehhhccCCceeeCCHHHHHHHHHh
Confidence 5888999999887 558888888763
No 10
>3lxr_F IPGB2; RHOA, GTPase, GEF, GEF-GTPase-complex, WXXXE, TTSS EF protein, bacterial GEF, cytoskeleton dynamics; HET: GDP; 1.68A {Shigella flexneri} PDB: 3lwn_F* 3lw8_E* 3lyq_A*
Probab=7.32 E-value=1.9e+02 Score=25.58 Aligned_cols=21 Identities=10% Similarity=0.406 Sum_probs=16.4
Q ss_pred hHHHHHHHHHhhhhcCCCCccc
Q 019305 45 DVVDHYKRKFYQRYIDPDLVVE 66 (343)
Q Consensus 45 ~~~~k~k~k~yk~~iDp~~~v~ 66 (343)
..++++-.+||++|||| -|++
T Consensus 155 ~~~n~lAd~ffekni~~-iDik 175 (192)
T 3lxr_F 155 NVANLISDQFFEKNVQY-IDLK 175 (192)
T ss_dssp HHHHHHHHHHHHHHTCC-CCHH
T ss_pred HHHHHHHHHHHHhcCCh-hhHH
Confidence 34677889999999999 5543
Done!