Query 019305
Match_columns 343
No_of_seqs 124 out of 170
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 14:02:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019305.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019305hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r8se_ a.118.3.1 (E:) Exchang 17.9 42 0.003 27.2 3.5 59 2-60 55-116 (187)
2 d2hbaa1 d.100.1.1 (A:1-52) Rib 16.3 46 0.0034 21.7 2.7 26 28-53 23-50 (52)
3 d1xsza1 a.118.3.1 (A:1-197) Ra 15.8 71 0.0052 26.0 4.5 57 2-60 63-124 (197)
4 d2v8qa1 d.129.6.2 (A:396-548) 13.8 34 0.0024 27.4 1.7 20 116-135 130-149 (153)
5 d2j01i2 d.100.1.1 (I:1-55) Rib 12.6 67 0.0049 21.1 2.7 25 29-53 24-50 (55)
6 d1fw4a_ a.39.1.5 (A:) Calmodul 10.6 52 0.0038 21.2 1.6 40 8-52 2-46 (65)
7 d1d1ja_ d.110.1.1 (A:) Profili 7.2 71 0.0052 24.4 1.3 15 25-39 1-15 (138)
8 d2d69a2 d.58.9.1 (A:8-133) Rib 6.6 72 0.0053 24.5 1.0 14 54-67 3-16 (126)
9 d2mysc_ a.39.1.5 (C:) Myosin R 6.5 99 0.0072 22.3 1.8 30 7-37 2-36 (145)
10 d2gycf2 d.100.1.1 (F:1-58) Rib 6.4 1.3E+02 0.0091 19.8 2.1 25 29-53 24-50 (58)
No 1
>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.92 E-value=42 Score=27.21 Aligned_cols=59 Identities=7% Similarity=0.160 Sum_probs=43.3
Q ss_pred CCcchhhHHHHHHHHhhccCCC---CcchHHHhhhcCCCCCCCCChhHHHHHHHHHhhhhcC
Q 019305 2 GEEREDSQKIKRIAAAAYDYDN---DPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYID 60 (343)
Q Consensus 2 ~~~~~~~~~~~~~a~~~yD~~~---d~~W~~Y~~nl~~pp~~~~~~~~~~k~k~k~yk~~iD 60 (343)
|+.++.++++=++=.+.|||.+ |..=..+++.+.+|-...--+-+++.|=++||+.|-+
T Consensus 55 g~~~~~~~~vl~~y~~~f~f~~~~i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~ 116 (187)
T d1r8se_ 55 GEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPG 116 (187)
T ss_dssp TCCSHHHHHHHHHHHHTCCCTTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccccHHHHHHHHHHHHhcCcCCCcHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 4455667777777888999998 4578889999998843111166788888999988743
No 2
>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=16.29 E-value=46 Score=21.69 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.0
Q ss_pred HHHhhhcCCCCCCC--CChhHHHHHHHH
Q 019305 28 ADYWSNILIPPHMA--ARSDVVDHYKRK 53 (343)
Q Consensus 28 ~~Y~~nl~~pp~~~--~~~~~~~k~k~k 53 (343)
.-|..|-++|..++ ++++.+.+++++
T Consensus 23 ~GyarN~LiP~g~A~~at~~n~~~~~~~ 50 (52)
T d2hbaa1 23 DGYANNFLFKQGLAIEATPANLKALEAQ 50 (52)
T ss_dssp HHHHHHTTTTTTSEEECCHHHHHHHHHH
T ss_pred ccchhHhhccCCchhhCCHHHHHHHHHh
Confidence 35889999999988 558888888763
No 3
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=15.85 E-value=71 Score=26.01 Aligned_cols=57 Identities=11% Similarity=0.331 Sum_probs=42.0
Q ss_pred CCcchhhHHHHHHHHhhccCCC---CcchHHHhhhcCCCCCCCCC--hhHHHHHHHHHhhhhcC
Q 019305 2 GEEREDSQKIKRIAAAAYDYDN---DPRWADYWSNILIPPHMAAR--SDVVDHYKRKFYQRYID 60 (343)
Q Consensus 2 ~~~~~~~~~~~~~a~~~yD~~~---d~~W~~Y~~nl~~pp~~~~~--~~~~~k~k~k~yk~~iD 60 (343)
|+.++..+++=++=.+.|||.| |..=..++..+.+|-- +. +-++++|=++||+.|-|
T Consensus 63 g~~~~~n~~vl~~y~~~f~f~~~~id~ALR~~l~~f~LpgE--~Q~IdRile~Fa~~y~~~Np~ 124 (197)
T d1xsza1 63 SSPEAENQQVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGE--AQKIDRLVQSFSGAYFQQNPD 124 (197)
T ss_dssp TCCSHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHTSCBCSS--HHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCchHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhccCCch--HHHHHHHHHHHHHHHHHhCcC
Confidence 4444556777777788999998 5688999999998843 22 56677888888887643
No 4
>d2v8qa1 d.129.6.2 (A:396-548) 5'-AMP-activated protein kinase catalytic subunit alpha-1, AMPK1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.79 E-value=34 Score=27.40 Aligned_cols=20 Identities=20% Similarity=0.110 Sum_probs=14.1
Q ss_pred cccccchhhhHHHHHHHHHH
Q 019305 116 SVRWDRQTIQFSVNAWVFVV 135 (343)
Q Consensus 116 ~~r~d~~t~~F~~~awvl~~ 135 (343)
+++-...|+-||-.|--|+.
T Consensus 130 ~~~~~~hTmeFFEmCa~LI~ 149 (153)
T d2v8qa1 130 APRPGSHTIEFFEMCANLIK 149 (153)
T ss_dssp CCCSCCHHHHHHHHHHHHHH
T ss_pred CCccCchhHHHHHHHHHHHH
Confidence 34555689999888777753
No 5
>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]}
Probab=12.55 E-value=67 Score=21.12 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=20.1
Q ss_pred HHhhhcCCCCCCC--CChhHHHHHHHH
Q 019305 29 DYWSNILIPPHMA--ARSDVVDHYKRK 53 (343)
Q Consensus 29 ~Y~~nl~~pp~~~--~~~~~~~k~k~k 53 (343)
-|..|-++|..++ .+++.+.+++.|
T Consensus 24 GyaRN~LiP~~~A~~at~~nl~~~~~~ 50 (55)
T d2j01i2 24 GYARNYLLPRGLAVLATESNLKALEAR 50 (55)
T ss_dssp HHHHHTTTTTTSEEECCHHHHHHHHHH
T ss_pred hhHHHHhcccCchhhcCHHHHHHHHHH
Confidence 5889999999887 568888888653
No 6
>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.56 E-value=52 Score=21.24 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=26.3
Q ss_pred hHHHHHHHHhhccCCCCc-----chHHHhhhcCCCCCCCCChhHHHHHHH
Q 019305 8 SQKIKRIAAAAYDYDNDP-----RWADYWSNILIPPHMAARSDVVDHYKR 52 (343)
Q Consensus 8 ~~~~~~~a~~~yD~~~d~-----~W~~Y~~nl~~pp~~~~~~~~~~k~k~ 52 (343)
++++ +.||..||-+|+- .-+..+..+=.++. ++.++++-+
T Consensus 2 eeel-~~aF~~fD~d~~G~I~~~el~~~l~~lg~~~~----~~e~~~l~~ 46 (65)
T d1fw4a_ 2 EEEI-REAFRVFDKDGNGYISAAELRHVMTNLGEKLT----DEEVDEMIR 46 (65)
T ss_dssp CHHH-HHHHHHHCTTCSSEECHHHHHHHHHHTTCCCC----HHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCC----HHHHHHHHH
Confidence 3556 4599999998884 35666777665555 555655544
No 7
>d1d1ja_ d.110.1.1 (A:) Profilin (actin-binding protein) {Human (Homo sapiens), isoform II [TaxId: 9606]}
Probab=7.18 E-value=71 Score=24.39 Aligned_cols=15 Identities=20% Similarity=0.539 Sum_probs=11.4
Q ss_pred cchHHHhhhcCCCCC
Q 019305 25 PRWADYWSNILIPPH 39 (343)
Q Consensus 25 ~~W~~Y~~nl~~pp~ 39 (343)
+.|+.|.+||.-+.+
T Consensus 1 s~Wq~Yvd~L~~~g~ 15 (138)
T d1d1ja_ 1 AGWQSYVDNLMCDGC 15 (138)
T ss_dssp CCTHHHHHHHSTTSC
T ss_pred CchHHHHHhhccccc
Confidence 479999999875544
No 8
>d2d69a2 d.58.9.1 (A:8-133) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=6.62 E-value=72 Score=24.50 Aligned_cols=14 Identities=14% Similarity=0.420 Sum_probs=11.9
Q ss_pred HhhhhcCCCCcccC
Q 019305 54 FYQRYIDPDLVVES 67 (343)
Q Consensus 54 ~yk~~iDp~~~v~~ 67 (343)
||..|+||||++..
T Consensus 3 ~~~~y~~~~Y~p~~ 16 (126)
T d2d69a2 3 WYLDFVDLNYEPGR 16 (126)
T ss_dssp CGGGGBCTTCCCCT
T ss_pred cccceeCCCCccCC
Confidence 78999999997764
No 9
>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=6.53 E-value=99 Score=22.30 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=19.1
Q ss_pred hhHHHHHHHHhhccCCCCc-----chHHHhhhcCCC
Q 019305 7 DSQKIKRIAAAAYDYDNDP-----RWADYWSNILIP 37 (343)
Q Consensus 7 ~~~~~~~~a~~~yD~~~d~-----~W~~Y~~nl~~p 37 (343)
.++++| +||..||-++|- ..+.-+..+=..
T Consensus 2 ~~eelk-e~F~~~D~d~~G~I~~~el~~~l~~lg~~ 36 (145)
T d2mysc_ 2 AADDFK-EAFLLFDRTGDAKITASQVGDIARALGQN 36 (145)
T ss_pred CHHHHH-HHHHHHcCCCCCeECHHHHHHHHHHhhhc
Confidence 356675 589999999984 344445544333
No 10
>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Escherichia coli [TaxId: 562]}
Probab=6.45 E-value=1.3e+02 Score=19.78 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=19.1
Q ss_pred HHhhhcCCCCCCC--CChhHHHHHHHH
Q 019305 29 DYWSNILIPPHMA--ARSDVVDHYKRK 53 (343)
Q Consensus 29 ~Y~~nl~~pp~~~--~~~~~~~k~k~k 53 (343)
-|-.|-++|..++ .+++.+.+++++
T Consensus 24 GyaRNyLiP~glA~~at~~n~~~~~~~ 50 (58)
T d2gycf2 24 GYARNFLVPQGKAVPATKKNIEFFEAR 50 (58)
T ss_dssp TTTTTTTTTTTSEEECCCHHHHHHHHH
T ss_pred chhHHHhccCCceecCCHHHHHHHHHH
Confidence 4778999999887 457788777663
Done!