BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019306
(343 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9GSB0|CRTP1_DICDI Crt homolog 1 OS=Dictyostelium discoideum GN=crtp1 PE=2 SV=1
Length = 473
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 7/208 (3%)
Query: 113 RRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSIL-YLRYHA 171
+ I+I + V GV N VL K + +Y FFL+QL FGYV ++ ++ Y +
Sbjct: 48 ETITILIYVVLYVTSGVINSVLLKKVMNKFTNYAFFLSQLTNFGYVPIFGAVTAYKIFFT 107
Query: 172 GIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFL 231
+ E P F +G L+A+ + G SG +L+Q + + ++ S IFL
Sbjct: 108 KDIPQETRDFPTRKFAIMGALDAITGFFVVIGGVSTSGPLQQLLNQAIIPFTMIASFIFL 167
Query: 232 GRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEV 291
RY + QL G LV IG ++T S G S G FW+ ++S + A V K++
Sbjct: 168 KERYSLIQLGGA-LVIIGGVVTSLIPSLLGGSSGGNKPFWNFFYLLSVIPGALSNVYKDI 226
Query: 292 IFLDAAQRLKGGVDLFVVNSYGSAFQDV 319
F A +D++ + + S +Q +
Sbjct: 227 GFQAVAD-----MDVWYLQYWDSLYQSI 249
>sp|Q55C66|CRTP3_DICDI Crt homolog 3 OS=Dictyostelium discoideum GN=crtp3 PE=3 SV=1
Length = 478
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 95/182 (52%), Gaps = 2/182 (1%)
Query: 113 RRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYF-SILYLRYHA 171
+ I+I + ++ GV N VL K ++ +Y FFL+Q+ +GY+ ++ ++ Y Y
Sbjct: 51 ETLPILIYVLLYIISGVINVVLLKKLMIKFVNYGFFLSQITNYGYLPIFLVAMWYKMYCT 110
Query: 172 GIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFL 231
V E + P+ FV +GLL+A+ + G SG +L+Q + + ++ S IFL
Sbjct: 111 SDVPKETRNFPQYKFVIMGLLDAINGFFVVIGGVSTSGPLQQLLNQAIIPFTMIASFIFL 170
Query: 232 GRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEV 291
RY + QL G ++ GVI+++ S G S G +F++ ++S + A V K++
Sbjct: 171 RERYSLFQLGGAAVILGGVIVSLIP-SLVGGSSGGNILFYNFFYLISVIPGALSNVYKDI 229
Query: 292 IF 293
F
Sbjct: 230 AF 231
>sp|Q550A6|CRTP2_DICDI Crt homolog 2 OS=Dictyostelium discoideum GN=crtp2 PE=3 SV=1
Length = 484
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 5/190 (2%)
Query: 105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
N ISK + +++ + +L GV N +L K + +Y FFL QL +GYV ++ +I
Sbjct: 51 NSISK---QTATVLVYVVLYILSGVINSLLLKKVMNVFTNYGFFLNQLTNYGYVPIFGAI 107
Query: 165 -LYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQ 223
LY + + S P+ FV +G L+A+ + G +G +L+Q+ + +
Sbjct: 108 VLYKILFTNDIPKDTRSFPQWKFVIMGALDAVTGYFVVIGGIKTTGPLQQLLNQSVIPFT 167
Query: 224 ILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA 283
+LLS IFL RY + QL G ++ GV++++ G++ G +F++ ++S + A
Sbjct: 168 MLLSFIFLKERYSLIQLGGALIIIGGVVVSLIPSLTGGNT-SGNMLFYNFFYLISMIPYA 226
Query: 284 ADTVLKEVIF 293
V K + F
Sbjct: 227 FSNVYKAIGF 236
>sp|Q9GSD8|CRT_PLABE Putative chloroquine resistance transporter OS=Plasmodium berghei
GN=CG10 PE=2 SV=1
Length = 425
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 13/207 (6%)
Query: 95 RKSGERTVE--FNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQL 152
SG V+ F +I V + + + + + + V N+V K L + +Y F ++
Sbjct: 35 NNSGRSCVKRFFKIIGNEMKNNVYVYLLSILYLCVCVMNKVFAKRTLNKMGNYSFVTSET 94
Query: 153 ATFGYVAVYFSILYLRYH----AGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILS 208
+ V F +LY Y + + +E F + LL+A M +
Sbjct: 95 HNIICIIV-FQLLYFIYRKTSSSSVYKNESQKNFGWQFFLISLLDASTVIISMIGLTRTT 153
Query: 209 GASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCF--LVGIGVIITVASGSNPGHSLKG 266
G + Q + + +FLG RY + G F L+ I V+ T S G +
Sbjct: 154 GNIQSFIMQLIIPVNMYFWFMFLGYRYHLFNYLGAFIILITIAVVETFLSFETQGEN--- 210
Query: 267 AGIFWSLLMIVSFLLQAADTVLKEVIF 293
I ++L+MI +F + + +EV+F
Sbjct: 211 -SIIFNLIMISAFNTLSFSNMTREVVF 236
>sp|P0ABT8|YIJE_ECOLI Uncharacterized inner membrane transporter yiJE OS=Escherichia coli
(strain K12) GN=yijE PE=1 SV=1
Length = 301
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 181 MPKAPF---VAVGLLEALAAATGMAAGAILSGAS--IPILSQTFLVWQILLSIIFLGRRY 235
M PF +A+ LL+ G+A A++SG + + ILS T W ++ + +FLG R
Sbjct: 64 MRPTPFKYTLAIALLQT-CGMVGLAQWALVSGGAGKVAILSYTMPFWVVIFAALFLGERL 122
Query: 236 RVNQLFGCFLVGIGVIITVASGSNPGHSLKGA 267
R Q F + G+ + + S+K A
Sbjct: 123 RRGQYFAILIAAFGLFLVLQPWQLDFSSMKSA 154
>sp|P0ABT9|YIJE_ECOL6 Uncharacterized inner membrane transporter yiJE OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yijE PE=3
SV=1
Length = 301
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 181 MPKAPF---VAVGLLEALAAATGMAAGAILSGAS--IPILSQTFLVWQILLSIIFLGRRY 235
M PF +A+ LL+ G+A A++SG + + ILS T W ++ + +FLG R
Sbjct: 64 MRPTPFKYTLAIALLQT-CGMVGLAQWALVSGGAGKVAILSYTMPFWVVIFAALFLGERL 122
Query: 236 RVNQLFGCFLVGIGVIITVASGSNPGHSLKGA 267
R Q F + G+ + + S+K A
Sbjct: 123 RRGQYFAILIAAFGLFLVLQPWQLDFSSMKSA 154
>sp|Q7REK3|CRT_PLAYO Putative chloroquine resistance transporter OS=Plasmodium yoelii
yoelii GN=PY05061 PE=3 SV=1
Length = 424
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 88/220 (40%), Gaps = 19/220 (8%)
Query: 81 SDGHEAAVGDLVDKRKSGERTVE--FNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLA 138
++G E +GD SG ++ F +I V + + + + + V N+V K
Sbjct: 28 TNGSE--IGD-----NSGRSCIKRFFKIIGNEMKNNVYVYFLSILYLCVCVMNKVFAKRT 80
Query: 139 LVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVT---DEMLSMPKAPFVAVGLLEAL 195
L + +Y F ++ + V F +LY Y + +E F + LL+A
Sbjct: 81 LNKMGNYSFVTSETHNIICIVV-FQLLYFIYRKTSTSGYKNESQKNFGWQFFLISLLDAS 139
Query: 196 AAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCF--LVGIGVIIT 253
M +G + Q + + +FLG RY + G F L+ I V+ T
Sbjct: 140 TVIISMIGLTRTTGNIQSFIMQLIIPVNMYFCFMFLGYRYHLFNYLGAFIILITIAVVET 199
Query: 254 VASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIF 293
S + I ++L+MI + + + + +EV+F
Sbjct: 200 FLSFETQSEN----SIIFNLIMISALIPLSFSNMTREVVF 235
>sp|P52893|ALAM_YEAST Probable alanine aminotransferase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ALT1 PE=1
SV=1
Length = 592
Score = 35.8 bits (81), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 28/199 (14%)
Query: 72 VASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGN 131
V + ++++ +G +V + + KR GE IS D + +AAV LL +
Sbjct: 218 VGAYSSSQGVEGIRKSVAEFITKRDEGE-------ISYPEDIFLTAGASAAVNYLLSIFC 270
Query: 132 RVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAG---------IVTDEMLSMP 182
R L+P+ YP + A LA A+ + YL ++G V E +
Sbjct: 271 RGPETGVLIPIPQYPLYTATLALNNSQALPY---YLDENSGWSTNPEEIETVVKEAIQNE 327
Query: 183 KAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFG 242
P V V + G GA+LS SI +Q F V +++ Y+ N G
Sbjct: 328 IKPTVLVVI------NPGNPTGAVLSPESI---AQIFEVAAKYGTVVIADEVYQENIFPG 378
Query: 243 CFLVGIGVIITVASGSNPG 261
+ I+ +PG
Sbjct: 379 TKFHSMKKILRHLQREHPG 397
>sp|Q8C261|NCKX5_MOUSE Sodium/potassium/calcium exchanger 5 OS=Mus musculus GN=Slc24a5
PE=2 SV=1
Length = 501
Score = 35.0 bits (79), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 136 KLALVPLKHYP--FFLAQLATFGYVAVYF-SILYLRYHAGIVTDEMLSMPKAPFV--AVG 190
+ A+ P +P FF Q +T G + +YF ILY+ IV D+ +P + ++G
Sbjct: 45 QCAVSPASEFPEGFFTKQESTDGGIVIYFLIILYMCMAISIVCDKYF-LPSLEIISDSLG 103
Query: 191 LLEALAAATGMAAGAILSGASIPILSQTFL 220
L + +A AT MAA G+S P L FL
Sbjct: 104 LSQDVAGATFMAA-----GSSAPELVTAFL 128
>sp|O13290|DYHC_SCHPO Dynein heavy chain, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dhc1 PE=1 SV=1
Length = 4196
Score = 33.1 bits (74), Expect = 2.9, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 292 IFLDAAQRLKGGVDLFVVNSYGS----------AFQDVMVHRCSHCCLFLSTWVLT 337
IFL ++L+ +DL VN Y + FQD+++ RC F T +LT
Sbjct: 886 IFLTIQRKLQDLIDLLYVNGYSNLPPFVRALNLRFQDLLISRCRKFLSFFKTTILT 941
>sp|Q7Z0V9|CRT_PLACH Putative chloroquine resistance transporter OS=Plasmodium chabaudi
GN=CG10 PE=3 SV=1
Length = 424
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 87/215 (40%), Gaps = 13/215 (6%)
Query: 84 HEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLK 143
+++ +G+ + R G + + +I + + + + + + + V N+V K L +
Sbjct: 29 NDSEIGN--NSRWGGAKRI-CKLIGNEMRNNIYVYLLSILYLCVSVMNKVFSKRTLNKIG 85
Query: 144 HYPFFLAQLATFGYVAVYFSILYLRYHAG---IVTDEMLSMPKAPFVAVGLLEALAAATG 200
+Y F +++ + F +LY Y +E F + LL+A
Sbjct: 86 NYSFVTSEVHNM-ICTIVFQLLYFIYRKTSNPASRNESQKNFGWQFFLISLLDASTVIIT 144
Query: 201 MAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCF--LVGIGVIITVASGS 258
M +G + Q + + IFLG RY + G F L+ I + TV S
Sbjct: 145 MIGLTRTTGNIQSFIMQLIIPVNMYFCFIFLGYRYHLFNYLGAFIILITIAAVETVLSYE 204
Query: 259 NPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIF 293
+ I ++L+MI + + + + +EV+F
Sbjct: 205 TQSDN----SIIFNLIMIFALIPLSFSNMTREVVF 235
>sp|A2RNJ0|MURC_LACLM UDP-N-acetylmuramate--L-alanine ligase OS=Lactococcus lactis subsp.
cremoris (strain MG1363) GN=murC PE=3 SV=1
Length = 443
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 67 NVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISK--SNDRRVEIVIAAAVT 124
+ +Y+ +A D HE DL DK + + +E + +S +DR V
Sbjct: 365 DTVYLAQIYGSAREVDHHEITAQDLADKVRKPAKVIELDNVSPLLDHDR--------GVY 416
Query: 125 VLLGVGNRVLYKLALVPL 142
V +G GN Y++A L
Sbjct: 417 VFMGAGNIQKYEIAFEKL 434
>sp|Q9CE10|MURC_LACLA UDP-N-acetylmuramate--L-alanine ligase OS=Lactococcus lactis subsp.
lactis (strain IL1403) GN=murC PE=3 SV=2
Length = 443
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 16/90 (17%)
Query: 67 NVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISK--SNDRRVEIVIAAAVT 124
+ +Y+ +A D HE DL DK + + ++ + +S +DR V
Sbjct: 365 DTVYLAQIYGSAREVDHHEITAQDLADKVRKPAKVIDLDNVSPLLDHDR--------GVY 416
Query: 125 VLLGVGNRVLYKLALVPLKHYPFFLAQLAT 154
V +G GN Y+LA L L+Q++T
Sbjct: 417 VFMGAGNIQKYELAFEKL------LSQVST 440
>sp|Q02W92|MURC_LACLS UDP-N-acetylmuramate--L-alanine ligase OS=Lactococcus lactis subsp.
cremoris (strain SK11) GN=murC PE=3 SV=1
Length = 443
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 67 NVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISK--SNDRRVEIVIAAAVT 124
+ +Y+ +A D HE DL DK + + +E + +S +DR V
Sbjct: 365 DTVYLAQIYGSAREVDHHEITAQDLADKVRKPAKVIELDNVSPLLDHDR--------GVY 416
Query: 125 VLLGVGNRVLYKLALVPL 142
V +G GN Y++A L
Sbjct: 417 VFMGAGNIQKYEIAFEKL 434
>sp|Q49SH1|NCKX5_DANRE Sodium/potassium/calcium exchanger 5 OS=Danio rerio GN=slc24a5 PE=2
SV=1
Length = 513
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 147 FFLAQLATFGYVAVYFSIL-YLRYHAGIVTDEMLSMPKAPFVA--VGLLEALAAATGMAA 203
FF Q G + +YF I+ Y+ IV DE +P ++ +GL + +A AT MAA
Sbjct: 70 FFTVQERKDGGILIYFMIIFYMLLSVSIVCDEYF-LPSLEVISERLGLSQDVAGATFMAA 128
Query: 204 GAILSGASIPILSQTFL 220
G+S P L FL
Sbjct: 129 -----GSSAPELVTAFL 140
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,084,404
Number of Sequences: 539616
Number of extensions: 4789287
Number of successful extensions: 33263
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 33205
Number of HSP's gapped (non-prelim): 87
length of query: 343
length of database: 191,569,459
effective HSP length: 118
effective length of query: 225
effective length of database: 127,894,771
effective search space: 28776323475
effective search space used: 28776323475
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)