Query 019306
Match_columns 343
No_of_seqs 145 out of 209
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 14:03:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 95.7 0.0029 9.8E-08 54.1 1.2 73 184-256 31-104 (137)
2 3b5d_A Multidrug transporter E 95.3 0.0038 1.3E-07 50.9 0.7 72 185-256 32-104 (110)
3 1oo0_A MAGO nashi protein; RNA 7.6 1.3E+02 0.0043 26.0 0.9 20 50-69 28-47 (147)
4 2hac_A T-cell surface glycopro 4.9 2.9E+02 0.0099 18.1 1.3 25 213-237 6-30 (33)
5 1y0n_A Hypothetical UPF0270 pr 2.8 5.8E+02 0.02 19.5 1.6 17 281-297 12-28 (78)
6 3pfn_A NAD kinase; structural 2.5 1.1E+03 0.038 22.5 3.6 42 10-54 256-299 (365)
7 2llm_A Amyloid beta A4 protein 3.5 3.5E+02 0.012 18.6 0.0 19 216-234 25-43 (43)
8 3tek_A Thermodbp-single strand 2.2 1.3E+03 0.045 19.3 3.2 25 287-311 95-120 (148)
9 3see_A Hypothetical sugar bind 2.1 1.2E+03 0.042 20.7 3.0 24 28-51 107-134 (222)
10 4b4a_A TATC, SEC-independent p 2.0 1.6E+03 0.056 20.0 3.8 33 167-208 172-204 (249)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=95.67 E-value=0.0029 Score=54.10 Aligned_cols=73 Identities=22% Similarity=0.157 Sum_probs=50.9
Q ss_pred cceehhhHHHHHHHHHHHhhcccccccHHHHh-ccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeec
Q 019306 184 APFVAVGLLEALAAATGMAAGAILSGASIPIL-SQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS 256 (343)
Q Consensus 184 ~kf~imGllDal~~~L~viA~~ytsgs~~~LL-~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~s 256 (343)
|++++..++-+++-++...|+.+.|.+....+ .....++++++++++|+.+.+..|++|+.++++|+++....
T Consensus 31 ~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 31 WPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp ---CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44555567788888999999999999976555 89999999999999999999999999999999998887554
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=95.32 E-value=0.0038 Score=50.93 Aligned_cols=72 Identities=22% Similarity=0.175 Sum_probs=59.9
Q ss_pred ceehhhHHHHHHHHHHHhhcccccccHHHHh-ccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeec
Q 019306 185 PFVAVGLLEALAAATGMAAGAILSGASIPIL-SQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS 256 (343)
Q Consensus 185 kf~imGllDal~~~L~viA~~ytsgs~~~LL-~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~s 256 (343)
+.++..++-..+-++...|+.+.|.+...-+ ......++.+++++++|.+.+..|++|+.++++|+++....
T Consensus 32 ~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3444445667777888888899998887555 89999999999999999999999999999999998876544
No 3
>1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B 2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A* 1p27_A
Probab=7.56 E-value=1.3e+02 Score=25.98 Aligned_cols=20 Identities=50% Similarity=0.768 Sum_probs=13.5
Q ss_pred ecCCccccccCCCCCCCcee
Q 019306 50 RSSKRNYYHNNSNYKNNNVI 69 (343)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~ 69 (343)
|+.-|-=|-|||||||.+.+
T Consensus 28 r~dG~lrYaNnSnYknd~~I 47 (147)
T 1oo0_A 28 RPDGKLRYANNSNYKNDTMI 47 (147)
T ss_dssp CTTSEEEEEEECCTTSSCCE
T ss_pred cCCCeEEEeccCCCcCCeeE
Confidence 34444446789999998643
No 4
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=4.88 E-value=2.9e+02 Score=18.05 Aligned_cols=25 Identities=16% Similarity=0.531 Sum_probs=19.4
Q ss_pred HHhccchHHHHHHHHHHHhccccce
Q 019306 213 PILSQTFLVWQILLSIIFLGRRYRV 237 (343)
Q Consensus 213 ~LL~Q~~IP~tmllS~ifLk~RY~~ 237 (343)
-+|++.....-+++..+|+|.|+..
T Consensus 6 YiLDgiL~iYgii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 6 YLLDGILFIYGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred eehHHHHHHHHHHHHHHHHHHHhhc
Confidence 4667777777888888898888764
No 5
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=2.78 E-value=5.8e+02 Score=19.52 Aligned_cols=17 Identities=6% Similarity=0.278 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhHHHH
Q 019306 281 LQAADTVLKEVIFLDAA 297 (343)
Q Consensus 281 p~A~SnV~kE~~F~~~~ 297 (343)
+-.+.|++||+++|+.+
T Consensus 12 ~eTL~nLIeefv~Regt 28 (78)
T 1y0n_A 12 ADTLNNLLEDFVTREGT 28 (78)
T ss_dssp HHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhcccc
Confidence 56889999999998753
No 6
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=2.50 E-value=1.1e+03 Score=22.52 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=26.3
Q ss_pred cccCCCccccCCC--CCCCCCceeEeeeeccccCCCCceEEEecCCc
Q 019306 10 AGSAASHSLLQSP--KPSPKAPVSCYLRDHHANQRLPTTLLFRSSKR 54 (343)
Q Consensus 10 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (343)
||+||=.-|+--| .|+...++=-||+-++.+.| | ++++.+.+
T Consensus 256 TGSTAYslSAGGPIv~P~~~~i~ltPI~PhsLs~R-P--iVlp~~~~ 299 (365)
T 3pfn_A 256 TGSTAYAAAAGASMIHPNVPAIMITPICPHSLSFR-P--IVVPAGVE 299 (365)
T ss_dssp GGGGTHHHHTTCCEECTTSCCEEEEEESCSSTTCC-C--EEECTTCC
T ss_pred ccHHHHHHhCCCCccCCCCCeEEEEeccCCccCCC-c--eEECCCCE
Confidence 5666644444322 23344555458999989999 7 88887763
No 7
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=3.54 E-value=3.5e+02 Score=18.62 Aligned_cols=19 Identities=11% Similarity=0.410 Sum_probs=12.8
Q ss_pred ccchHHHHHHHHHHHhccc
Q 019306 216 SQTFLVWQILLSIIFLGRR 234 (343)
Q Consensus 216 ~Q~~IP~tmllS~ifLk~R 234 (343)
....+-..+++|.+++|||
T Consensus 25 ~gVai~~vIVvsl~mlRrr 43 (43)
T 2llm_A 25 GGVVIATVIVITLVMLKKK 43 (43)
Confidence 4455566677777778776
No 8
>3tek_A Thermodbp-single stranded DNA binding protein; leucine zipper; 2.00A {Thermoproteus tenax}
Probab=2.22 E-value=1.3e+03 Score=19.28 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=13.9
Q ss_pred HHHHHHhHHHHHhhc-CCCCeEEEee
Q 019306 287 VLKEVIFLDAAQRLK-GGVDLFVVNS 311 (343)
Q Consensus 287 V~kE~~F~~~~~~LK-~~ldif~vns 311 (343)
-+||..|.....+++ ++-|+|.+..
T Consensus 95 ~~K~WFFnE~~pky~l~kGDiFmiiT 120 (148)
T 3tek_A 95 GLKKWFFEEAVPRYNLERGDIFMIST 120 (148)
T ss_dssp HHHHHHHHTHHHHHTCCTTCCEEEEE
T ss_pred HHHHHHHhhhhhhhCCCcCcEEEEEE
Confidence 345666666555554 3466766543
No 9
>3see_A Hypothetical sugar binding protein; galactose-binding domain-like, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.25A {Bacteroides thetaiotaomicron}
Probab=2.11 E-value=1.2e+03 Score=20.72 Aligned_cols=24 Identities=38% Similarity=0.726 Sum_probs=18.4
Q ss_pred CceeEeeeec----cccCCCCceEEEec
Q 019306 28 APVSCYLRDH----HANQRLPTTLLFRS 51 (343)
Q Consensus 28 ~~~~~~~~~~----~~~~~~~~~~~~~~ 51 (343)
.+|+.+||.. ..|..+-+..++|.
T Consensus 107 ~qV~vfIr~~~~~k~~ngk~~~~Ffmr~ 134 (222)
T 3see_A 107 TPVSVYIKQTNEEKNDNGKLNTTFFMRR 134 (222)
T ss_dssp CEEEEEEEESSCCBCTTSCBCCCEEEET
T ss_pred CcEEEEEEecccccccccccceeEEEEe
Confidence 6899999886 66777666677775
No 10
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=2.00 E-value=1.6e+03 Score=19.96 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=21.4
Q ss_pred HHHhcCccchhhhcCCCcceehhhHHHHHHHHHHHhhccccc
Q 019306 167 LRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILS 208 (343)
Q Consensus 167 ~r~~~~~it~eml~~Pk~kf~imGllDal~~~L~viA~~yts 208 (343)
.-.+.|.++.+.+. .+||+++++. .++|+--||
T Consensus 172 ~L~~~Giv~~~~l~-~~Rr~~iv~~--------~v~aAiiTP 204 (249)
T 4b4a_A 172 VLQKAGVITPEQLA-SFRKYFIVIA--------FVIGAIIAP 204 (249)
T ss_dssp HHHHTTSSCHHHHH-HHHHHHHHHH--------HHHHHHHCS
T ss_pred HHHHcCCcCHHHHH-HHhHHHHHHH--------HHHHHHHCC
Confidence 44667778877653 3688998874 344555566
Done!