Query 019306
Match_columns 343
No_of_seqs 145 out of 209
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 14:03:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019306.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019306hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 20.2 24 0.0017 30.4 2.5 65 184-252 3-67 (248)
2 d1rk8b_ d.232.1.1 (B:) Mago na 5.9 66 0.0048 25.5 0.4 14 55-68 30-43 (141)
3 d1y0na_ d.291.1.1 (A:) Hypothe 3.9 1.8E+02 0.013 20.5 1.6 17 281-297 12-28 (78)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.0 2.7E+02 0.02 23.2 2.2 59 119-177 30-91 (248)
5 d2bvca2 d.128.1.1 (A:105-478) 2.8 1.9E+02 0.014 25.5 1.0 31 3-34 221-251 (374)
6 d1ml8a_ d.227.1.2 (A:) Hypothe 2.8 6.8E+02 0.049 17.5 4.2 38 100-137 22-59 (134)
7 d1vlaa_ d.227.1.2 (A:) Hypothe 2.8 4.1E+02 0.03 19.0 2.8 31 107-137 37-67 (144)
8 d2i5nh2 f.23.10.1 (H:1-36) Pho 2.1 4.3E+02 0.031 15.5 1.6 23 206-228 9-31 (36)
9 d1q90a3 f.23.23.1 (A:248-292) 1.9 9.1E+02 0.066 15.0 3.7 30 267-296 3-32 (45)
10 d1eysh2 f.23.10.1 (H:7-43) Pho 1.8 8.6E+02 0.062 14.5 2.7 25 149-173 5-29 (37)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=20.21 E-value=24 Score=30.45 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=45.6
Q ss_pred cceehhhHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeE
Q 019306 184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII 252 (343)
Q Consensus 184 ~kf~imGllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv 252 (343)
-|++++|++++++.+..+.++..=.- .+--..+..+++.-++++.+|...++|+-=.++...+++
T Consensus 3 lK~~ll~l~~a~~~~~~~~~~~~~~~----~~a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fv 67 (248)
T d2r6gf1 3 LKWSVLGLLGLLVGYLVVLMYAQGEY----LFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFV 67 (248)
T ss_dssp CTHHHHHHHHHHHHHTHHHHHGGGCH----HHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchH----HHHHHHHHHHHheEEEEEccCccceehhhhHHHHHHHHH
Confidence 37889999999999988776553222 122245667778889999999988888765555544443
No 2
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.91 E-value=66 Score=25.45 Aligned_cols=14 Identities=57% Similarity=0.831 Sum_probs=3.4
Q ss_pred cccccCCCCCCCce
Q 019306 55 NYYHNNSNYKNNNV 68 (343)
Q Consensus 55 ~~~~~~~~~~~~~~ 68 (343)
--|-|||||||.+-
T Consensus 30 lrYaNnSnYknd~~ 43 (141)
T d1rk8b_ 30 LRYANNSNYKNDTM 43 (141)
T ss_dssp EEEEC--------C
T ss_pred eeeecccCccchhh
Confidence 34678999999764
No 3
>d1y0na_ d.291.1.1 (A:) Hypothetical UPF0270 protein PA3463 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.88 E-value=1.8e+02 Score=20.53 Aligned_cols=17 Identities=6% Similarity=0.278 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhHHHH
Q 019306 281 LQAADTVLKEVIFLDAA 297 (343)
Q Consensus 281 p~A~SnV~kE~~F~~~~ 297 (343)
+-++.|++||+++|+.+
T Consensus 12 ~etL~~lIeeFv~REGT 28 (78)
T d1y0na_ 12 ADTLNNLLEDFVTREGT 28 (78)
T ss_dssp HHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhccCc
Confidence 56889999999998753
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.03 E-value=2.7e+02 Score=23.23 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHhCCCC-ChhHHHHHHhhhhhhHhHHHHH-HHHHhcCc-cchh
Q 019306 119 IAAAVTVLLGVGNRVLYKLALVPLK-HYPFFLAQLATFGYVAVYFSIL-YLRYHAGI-VTDE 177 (343)
Q Consensus 119 i~~i~~Vi~Gv~N~Vl~Kl~~~~~~-nYp~Fl~q~~t~~yv~vyf~il-~~r~~~~~-it~e 177 (343)
++++.++++...|-|..-....|++ -+|..+-.+...+|.++|...+ +..|..+. .+||
T Consensus 30 ~a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi~yT~~iaFTNy~tgh~ltk~ 91 (248)
T d2r6gf1 30 FAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQLTFE 91 (248)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTHHHHHHHHHGGGBCCSSTTCBCHH
T ss_pred HHHHHHHHHHheEEEEEccCccceehhhhHHHHHHHHHHHhheeEEEEEEEEcCCCccccHH
Confidence 4456666667777776655555554 5666666666667777776555 33455543 3454
No 5
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.83 E-value=1.9e+02 Score=25.47 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=22.6
Q ss_pred ccccccccccCCCccccCCCCCCCCCceeEee
Q 019306 3 SCYSRLTAGSAASHSLLQSPKPSPKAPVSCYL 34 (343)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (343)
.+||||..|..+|....-.. .|+...+-++.
T Consensus 221 NSY~Rl~~~~~ap~~~~Wg~-~nR~~~iRi~~ 251 (374)
T d2bvca2 221 NSYKRLVPGYEAPINLVYSQ-RNRSACVRIPI 251 (374)
T ss_dssp THHHHSSTTSSSCSBCCEEE-TCTTSSEEECC
T ss_pred chhhhcCCCCccceEEeecc-Cccccceeecc
Confidence 57999999999988766655 56666665543
No 6
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=2.83 E-value=6.8e+02 Score=17.47 Aligned_cols=38 Identities=16% Similarity=-0.060 Sum_probs=18.6
Q ss_pred ceeeeeccccccCcchHHHHHHHHHHHhhhhhHHHHHH
Q 019306 100 RTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKL 137 (343)
Q Consensus 100 ~~~~~~~~~~~~~~~~~v~i~~i~~Vi~Gv~N~Vl~Kl 137 (343)
.+..+..+...+-+-..+.+..++-....+...++-|+
T Consensus 22 ~i~~D~gg~~~gp~P~elllaal~~C~~~~~~~~a~~~ 59 (134)
T d1ml8a_ 22 QILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKG 59 (134)
T ss_dssp EEEEETTTTSSSCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444334445555566555555544444444444443
No 7
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=2.77 E-value=4.1e+02 Score=18.98 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=16.3
Q ss_pred cccccCcchHHHHHHHHHHHhhhhhHHHHHH
Q 019306 107 ISKSNDRRVEIVIAAAVTVLLGVGNRVLYKL 137 (343)
Q Consensus 107 ~~~~~~~~~~v~i~~i~~Vi~Gv~N~Vl~Kl 137 (343)
|.+.+-.-..+.+..++-....+...++-|+
T Consensus 37 G~~~g~~P~elllaala~C~~~~~~~~a~~~ 67 (144)
T d1vlaa_ 37 GKDAAPRPLELVLTGLMGCTGMDVVSILRKM 67 (144)
T ss_dssp CCSCSCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555566655555555545555555443
No 8
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=2.10 E-value=4.3e+02 Score=15.50 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=14.5
Q ss_pred cccccHHHHhccchHHHHHHHHH
Q 019306 206 ILSGASIPILSQTFLVWQILLSI 228 (343)
Q Consensus 206 ytsgs~~~LL~Q~~IP~tmllS~ 228 (343)
++.......--|+.+.||+++-+
T Consensus 9 hldiaqlvwyaqwlviwtvvlly 31 (36)
T d2i5nh2 9 HLDIAQLVWYAQWLVIWTVVLLY 31 (36)
T ss_dssp GCBHHHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHHHHHh
Confidence 34444444556888888887654
No 9
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.88 E-value=9.1e+02 Score=14.98 Aligned_cols=30 Identities=30% Similarity=0.191 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q 019306 267 AGIFWSLLMIVSFLLQAADTVLKEVIFLDA 296 (343)
Q Consensus 267 ~~vlw~lL~ilS~ip~A~SnV~kE~~F~~~ 296 (343)
+.+.|-++++++.++.-+--|+|-+=|.+.
T Consensus 3 ~Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 3 ARIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999999998877665
No 10
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=1.82 E-value=8.6e+02 Score=14.53 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHhHHHHHHHHHhcCc
Q 019306 149 LAQLATFGYVAVYFSILYLRYHAGI 173 (343)
Q Consensus 149 l~q~~t~~yv~vyf~il~~r~~~~~ 173 (343)
++|+.-+.|.++|...+++..+.+.
T Consensus 5 ~Aql~ly~Fw~FFagLi~YL~rE~~ 29 (37)
T d1eysh2 5 AAQITIWAFWLFFFGLIIYLRREDK 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Done!