BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019307
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDH 73
KGPWT EED ++ ++Q++GP W + + R K CR RW N+L P +K+ ++T+
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 85
Query: 74 EEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
E+++I LGNRWA IA LP RTDN +KN+WN+
Sbjct: 86 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNS 122
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 48 RCSKSCRLRWTNYLRPGIKRGNFTDHEEKMII-HLQALLGNRWAAIASYLPQRTDNDIKN 106
R C+ RW L P + +G +T E++ +I H+Q RW+ IA +L R +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67
Query: 107 YWNTH 111
W+ H
Sbjct: 68 RWHNH 72
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDH 73
KGPWT EED ++ +Q++GP W SV R K CR RW N+L P +K+ ++T+
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 74 EEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
E+++I LGNRWA IA LP RTDN IKN+WN+
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 153
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 94.0 bits (232), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDH 73
KGPWT EED ++ +Q++GP W SV R K CR RW N+L P +K+ ++T+
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74 EEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
E+++I LGNRWA IA LP RTDN IKN+WN+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99
Score = 28.1 bits (61), Expect = 8.2, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 67 RGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTH 111
+G +T E++ +I L G RW+ IA +L R + W+ H
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 94.0 bits (232), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDH 73
KGPWT EED ++ +Q++GP W SV R K CR RW N+L P +K+ ++T+
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74 EEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
E+++I LGNRWA IA LP RTDN IKN+WN+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99
Score = 27.7 bits (60), Expect = 8.7, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 67 RGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTH 111
+G +T E++ +I L G RW+ IA +L R + W+ H
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 90.1 bits (222), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/97 (42%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDH 73
KGPWT EED ++ ++++G W + + R K CR RW N+L P +K+ ++T+
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 74 EEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
E+++I +LGNRWA IA LP RTDN +KN+WN+
Sbjct: 66 EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNS 102
Score = 27.7 bits (60), Expect = 9.1, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 63 PGIKRGNFTDHEEKMIIHLQALLGNR-WAAIASYLPQRTDNDIKNYWNTH 111
P + +G +T E++ +I L G + W IA +L R + W+ H
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNH 52
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL--RCSKSCRLRWTNYLRPGIKRGNFT 71
KGP+T ED ++ Y++E+GP NW P T L R K CR RW N+L P + + +T
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72 DHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
E++ I LG++W+ IA +P RTDN IKN WN+
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNS 97
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 11 GVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNF 70
KK +TPEED +L + +HG +W+ + T R ++ CR RW NYL P I +
Sbjct: 8 AAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAA-TFPNRNARQCRDRWKNYLAPSISHTPW 65
Query: 71 TDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
T E+ +++ G +WA IA + P RTD IKN W T
Sbjct: 66 TAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 66 KRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 111
K+ FT E++M+ A G+ W IA+ P R ++ W +
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNY 55
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDH 73
K +T EED+ L + +G +W + + + R + CR RW NY+ P ++ ++
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRI-SQLMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74 EEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYW 108
E+ ++ A G +W I+ +L R+DN+I+N W
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 11 GVKKGPWTPEEDIILVSYIQEHGP 34
++ PW+PEED++L E+GP
Sbjct: 50 ALRTDPWSPEEDMLLDQKYAEYGP 73
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 65 IKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
+K+ ++T+ E+++I LGNRWA IA LP RTDN IKN+WN+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 46
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 65 IKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110
+K+ ++T+ E++++ LGNRWA IA LP RTDN IKN+WN+
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 48
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 47.8 bits (112), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
KGPWT EED L+ +Q++GP W SV R K CR RW N+L P
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 27.7 bits (60), Expect = 8.6, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 67 RGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTH 111
+G +T E++ +I L G RW+ IA +L R + W+ H
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
KGPWT EED ++ +Q++GP W SV R K CR RW N+L P
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 67 RGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTH 111
+G +T E++ +I L G RW+ IA +L R + W+ H
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
KGPWT EED ++ +Q++GP W SV R K CR RW N+L P
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 28.5 bits (62), Expect = 5.3, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 67 RGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTH 111
+G +T E++ +I L G RW+ IA +L R + W+ H
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 17 WTPEEDIILVSYIQEHGPGNWRSVPTNTGLL--RCSKSCRLRWTNYLRPGIKRGNFT 71
W ED IL + + ++G W + + LL + +K C+ RW +L P IK+ ++
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIAS---LLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 31.2 bits (69), Expect = 0.97, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
KK WT EE + + +Q++G GNW ++ N + R + + RW R G+
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
KK WT EE + + +Q++G GNW ++ N + R + + RW R G+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
KK WT EE + + +Q++G GNW ++ N + R + + RW R G+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
KK WT EE + + +Q++G GNW ++ N + R + + RW R G+
Sbjct: 13 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 66
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
KK WT EE + + +Q++G GNW ++ N + R + + RW R G+
Sbjct: 9 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 62
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 17 WTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCR 54
W +E+++L+ + G GNW + G R + CR
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECR 49
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
K WT EED L ++++G +W+ V N R C+ RW L P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWK-VIANYLPNRTDVQCQHRWQKVLNP 51
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
K WT EED L ++++G +W+ V N R C+ RW L P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWK-VIANYLPNRTDVQCQHRWQKVLNP 51
>pdb|2AMX|A Chain A, Crystal Structure Of Plasmodium Yoelii Adenosine Deaminase
(Py02076)
pdb|2AMX|B Chain B, Crystal Structure Of Plasmodium Yoelii Adenosine Deaminase
(Py02076)
Length = 376
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 63 PGIKRGNFTDHEEKMIIHL-----QALLGNRWAAIASYLPQRTDNDIKNYW 108
PG+ N D+ EK+ IHL + ++ N WA S++ +++K +
Sbjct: 325 PGMFLSNINDNYEKLYIHLNFTLEEFMIMNNWAFEKSFVSDDVKSELKALY 375
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,008,983
Number of Sequences: 62578
Number of extensions: 413536
Number of successful extensions: 10305
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 10226
Number of HSP's gapped (non-prelim): 77
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)