Query 019307
Match_columns 343
No_of_seqs 324 out of 1420
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 08:23:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03091 hypothetical protein; 100.0 3.6E-37 7.7E-42 306.4 14.2 125 1-125 1-125 (459)
2 PLN03212 Transcription repress 100.0 6.6E-37 1.4E-41 286.3 11.2 123 3-125 14-136 (249)
3 KOG0048 Transcription factor, 100.0 1.1E-35 2.3E-40 278.0 11.6 109 12-120 7-115 (238)
4 KOG0049 Transcription factor, 99.8 3.9E-19 8.5E-24 183.3 10.9 167 1-169 347-514 (939)
5 KOG0049 Transcription factor, 99.7 8.3E-17 1.8E-21 166.3 7.5 120 5-125 291-419 (939)
6 PF13921 Myb_DNA-bind_6: Myb-l 99.6 2.2E-16 4.8E-21 117.4 4.2 60 17-78 1-60 (60)
7 COG5147 REB1 Myb superfamily p 99.6 1.6E-15 3.5E-20 155.5 5.3 107 10-117 16-122 (512)
8 KOG0050 mRNA splicing protein 99.5 2.5E-15 5.5E-20 152.3 3.8 110 10-121 3-112 (617)
9 KOG0051 RNA polymerase I termi 99.4 1.9E-13 4.1E-18 141.9 6.4 101 13-116 383-511 (607)
10 PF00249 Myb_DNA-binding: Myb- 99.4 9E-13 1.9E-17 94.6 5.5 46 67-112 1-48 (48)
11 PF00249 Myb_DNA-binding: Myb- 99.4 1.6E-13 3.4E-18 98.5 1.1 48 14-61 1-48 (48)
12 PLN03212 Transcription repress 99.3 2.7E-12 5.9E-17 121.1 4.7 65 63-127 21-87 (249)
13 PF13921 Myb_DNA-bind_6: Myb-l 99.3 4.3E-12 9.3E-17 94.3 4.4 51 70-120 1-51 (60)
14 KOG0048 Transcription factor, 99.2 1E-12 2.2E-17 123.3 -1.0 65 63-127 5-71 (238)
15 smart00717 SANT SANT SWI3, AD 99.2 3.4E-11 7.4E-16 83.4 5.6 47 67-113 1-48 (49)
16 PLN03091 hypothetical protein; 99.1 2.2E-11 4.8E-16 122.7 3.3 64 63-126 10-75 (459)
17 cd00167 SANT 'SWI3, ADA2, N-Co 99.1 2.6E-10 5.7E-15 77.9 5.7 44 69-112 1-45 (45)
18 smart00717 SANT SANT SWI3, AD 99.0 1.3E-10 2.8E-15 80.4 3.1 48 14-62 1-48 (49)
19 cd00167 SANT 'SWI3, ADA2, N-Co 98.9 9.3E-10 2E-14 75.1 2.7 45 16-61 1-45 (45)
20 KOG0051 RNA polymerase I termi 98.8 6.1E-09 1.3E-13 108.8 6.6 102 12-115 306-431 (607)
21 COG5147 REB1 Myb superfamily p 98.3 7.3E-08 1.6E-12 99.7 -0.9 96 13-111 290-395 (512)
22 TIGR01557 myb_SHAQKYF myb-like 97.8 1.8E-05 3.9E-10 59.6 3.2 49 13-61 2-54 (57)
23 KOG0050 mRNA splicing protein 97.6 3.9E-05 8.5E-10 79.2 3.7 62 65-126 5-67 (617)
24 KOG0457 Histone acetyltransfer 97.5 0.00015 3.3E-09 73.6 5.9 48 65-112 70-118 (438)
25 KOG0457 Histone acetyltransfer 97.5 4.9E-05 1.1E-09 77.1 2.2 49 12-61 70-118 (438)
26 TIGR01557 myb_SHAQKYF myb-like 97.4 0.00038 8.3E-09 52.4 5.8 46 67-112 3-54 (57)
27 PF13325 MCRS_N: N-terminal re 97.3 0.002 4.4E-08 59.9 10.0 103 16-120 1-134 (199)
28 TIGR02894 DNA_bind_RsfA transc 97.1 0.00065 1.4E-08 61.1 5.1 51 66-117 3-60 (161)
29 PF13837 Myb_DNA-bind_4: Myb/S 97.1 0.00055 1.2E-08 54.0 3.7 54 67-121 1-72 (90)
30 PF08914 Myb_DNA-bind_2: Rap1 96.8 0.0019 4.2E-08 49.9 4.7 51 67-117 2-62 (65)
31 COG5259 RSC8 RSC chromatin rem 96.6 0.0009 2E-08 68.7 1.9 46 13-60 278-323 (531)
32 KOG1279 Chromatin remodeling f 96.6 0.0024 5.2E-08 66.7 5.1 46 66-111 252-297 (506)
33 COG5259 RSC8 RSC chromatin rem 96.6 0.0021 4.5E-08 66.1 4.3 55 67-121 279-335 (531)
34 KOG1279 Chromatin remodeling f 96.4 0.002 4.3E-08 67.3 2.8 47 12-60 251-297 (506)
35 PRK13923 putative spore coat p 96.4 0.0049 1.1E-07 56.1 4.7 51 65-116 3-60 (170)
36 PF13873 Myb_DNA-bind_5: Myb/S 96.2 0.016 3.5E-07 44.9 6.4 51 67-117 2-74 (78)
37 PF08914 Myb_DNA-bind_2: Rap1 96.1 0.003 6.4E-08 48.9 1.9 51 14-64 2-60 (65)
38 TIGR02894 DNA_bind_RsfA transc 96.0 0.0018 4E-08 58.2 0.3 50 12-63 2-57 (161)
39 PF13837 Myb_DNA-bind_4: Myb/S 95.8 0.0027 5.9E-08 50.0 0.2 48 14-61 1-64 (90)
40 COG5114 Histone acetyltransfer 95.7 0.014 3E-07 58.0 4.6 48 66-113 62-110 (432)
41 PLN03142 Probable chromatin-re 95.3 0.042 9.2E-07 62.0 7.5 99 16-115 826-987 (1033)
42 COG5114 Histone acetyltransfer 95.1 0.0069 1.5E-07 60.0 0.7 48 14-62 63-110 (432)
43 PF13873 Myb_DNA-bind_5: Myb/S 94.4 0.012 2.6E-07 45.7 0.2 49 13-61 1-69 (78)
44 PRK13923 putative spore coat p 94.3 0.01 2.3E-07 54.0 -0.4 50 11-62 2-57 (170)
45 PF09111 SLIDE: SLIDE; InterP 93.7 0.14 3E-06 44.1 5.2 51 64-114 46-112 (118)
46 KOG4282 Transcription factor G 93.5 0.18 4E-06 49.7 6.6 56 67-123 54-123 (345)
47 KOG2656 DNA methyltransferase 92.0 0.12 2.5E-06 52.6 2.9 82 36-118 75-187 (445)
48 PF12776 Myb_DNA-bind_3: Myb/S 92.0 0.44 9.6E-06 37.8 5.8 46 69-114 1-64 (96)
49 COG5118 BDP1 Transcription ini 87.8 0.81 1.8E-05 46.7 4.9 47 68-114 366-412 (507)
50 KOG1194 Predicted DNA-binding 86.2 1.8 3.9E-05 45.1 6.4 48 66-113 186-233 (534)
51 PF08281 Sigma70_r4_2: Sigma-7 86.1 2.3 4.9E-05 30.4 5.3 41 72-113 12-52 (54)
52 KOG4282 Transcription factor G 79.4 1.1 2.3E-05 44.4 1.7 47 15-61 55-113 (345)
53 smart00595 MADF subfamily of S 78.2 4.9 0.00011 31.4 4.9 25 89-114 30-54 (89)
54 COG5118 BDP1 Transcription ini 77.6 1.5 3.2E-05 44.8 2.2 44 15-60 366-409 (507)
55 PF09111 SLIDE: SLIDE; InterP 76.9 1.6 3.4E-05 37.6 1.9 47 11-57 46-106 (118)
56 KOG4167 Predicted DNA-binding 71.9 6.8 0.00015 43.2 5.4 45 67-111 619-663 (907)
57 PF11035 SnAPC_2_like: Small n 71.0 23 0.00049 35.7 8.5 48 67-115 21-72 (344)
58 PF04545 Sigma70_r4: Sigma-70, 70.2 13 0.00029 26.1 5.1 41 73-114 7-47 (50)
59 KOG4468 Polycomb-group transcr 70.1 7.9 0.00017 41.9 5.4 57 66-123 87-153 (782)
60 PF11626 Rap1_C: TRF2-interact 68.4 4.9 0.00011 32.3 2.7 23 11-33 44-74 (87)
61 PF12776 Myb_DNA-bind_3: Myb/S 68.1 5.2 0.00011 31.6 2.8 44 16-59 1-60 (96)
62 PRK11179 DNA-binding transcrip 67.2 13 0.00028 32.5 5.4 46 72-118 8-54 (153)
63 PF13404 HTH_AsnC-type: AsnC-t 66.9 16 0.00035 25.6 4.8 38 73-111 3-41 (42)
64 PRK09643 RNA polymerase sigma 63.1 27 0.00059 31.2 6.8 31 83-114 147-177 (192)
65 PF13325 MCRS_N: N-terminal re 62.8 15 0.00033 34.5 5.2 45 69-114 1-48 (199)
66 PF02260 FATC: FATC domain; I 62.4 2.1 4.4E-05 28.9 -0.4 16 200-215 15-30 (33)
67 KOG4167 Predicted DNA-binding 61.7 4.7 0.0001 44.3 1.9 44 14-59 619-662 (907)
68 PRK11169 leucine-responsive tr 60.3 12 0.00027 33.0 4.1 45 72-117 13-58 (164)
69 KOG4329 DNA-binding protein [G 60.2 23 0.0005 36.3 6.3 45 68-112 278-323 (445)
70 KOG4468 Polycomb-group transcr 60.1 7.9 0.00017 41.8 3.1 47 14-62 88-144 (782)
71 TIGR02985 Sig70_bacteroi1 RNA 59.2 30 0.00066 28.8 6.1 39 75-114 118-156 (161)
72 PF11626 Rap1_C: TRF2-interact 58.1 5.2 0.00011 32.1 1.2 17 63-79 43-59 (87)
73 PF13404 HTH_AsnC-type: AsnC-t 56.7 4.8 0.0001 28.3 0.6 38 20-59 3-40 (42)
74 KOG1194 Predicted DNA-binding 54.3 15 0.00032 38.6 3.9 41 69-110 472-512 (534)
75 PF07750 GcrA: GcrA cell cycle 52.8 17 0.00037 32.8 3.6 40 69-109 2-41 (162)
76 PRK11179 DNA-binding transcrip 51.8 7.7 0.00017 33.9 1.3 46 19-66 8-53 (153)
77 PF01388 ARID: ARID/BRIGHT DNA 51.4 40 0.00087 26.6 5.3 37 78-114 41-90 (92)
78 TIGR02937 sigma70-ECF RNA poly 51.2 45 0.00097 26.9 5.7 37 77-114 117-153 (158)
79 PF11035 SnAPC_2_like: Small n 50.2 65 0.0014 32.5 7.4 86 14-113 21-127 (344)
80 PRK11169 leucine-responsive tr 47.3 7.9 0.00017 34.3 0.6 46 19-66 13-58 (164)
81 cd08319 Death_RAIDD Death doma 47.1 29 0.00062 28.0 3.8 29 75-104 2-30 (83)
82 PRK11924 RNA polymerase sigma 46.5 51 0.0011 28.0 5.6 30 84-114 139-168 (179)
83 smart00501 BRIGHT BRIGHT, ARID 46.1 51 0.0011 26.3 5.1 37 78-114 37-86 (93)
84 PF01388 ARID: ARID/BRIGHT DNA 46.0 6.2 0.00013 31.3 -0.2 40 23-62 39-89 (92)
85 PF10545 MADF_DNA_bdg: Alcohol 45.5 24 0.00053 26.6 3.1 26 89-114 29-55 (85)
86 PRK09652 RNA polymerase sigma 45.4 59 0.0013 27.7 5.8 34 80-114 138-171 (182)
87 cd06171 Sigma70_r4 Sigma70, re 45.3 75 0.0016 21.0 5.3 40 70-111 11-50 (55)
88 PF09420 Nop16: Ribosome bioge 44.4 41 0.00088 30.1 4.7 47 66-112 113-163 (164)
89 KOG2656 DNA methyltransferase 44.2 21 0.00045 36.9 3.1 50 11-61 127-181 (445)
90 PF07638 Sigma70_ECF: ECF sigm 43.5 68 0.0015 28.7 6.1 39 74-113 139-177 (185)
91 KOG0384 Chromodomain-helicase 43.3 20 0.00044 41.8 3.1 77 13-96 1132-1209(1373)
92 smart00344 HTH_ASNC helix_turn 43.2 49 0.0011 26.5 4.7 45 73-118 3-48 (108)
93 PRK12512 RNA polymerase sigma 42.4 84 0.0018 27.4 6.4 36 84-120 145-180 (184)
94 PF04504 DUF573: Protein of un 41.9 89 0.0019 25.8 6.1 47 68-114 5-64 (98)
95 smart00501 BRIGHT BRIGHT, ARID 39.9 12 0.00026 30.1 0.5 41 23-63 35-86 (93)
96 PRK04217 hypothetical protein; 39.7 95 0.0021 26.4 6.0 47 68-116 41-87 (110)
97 PRK09641 RNA polymerase sigma 39.0 84 0.0018 27.2 5.8 29 85-114 151-179 (187)
98 TIGR02939 RpoE_Sigma70 RNA pol 38.2 69 0.0015 27.8 5.2 29 85-114 153-181 (190)
99 TIGR02954 Sig70_famx3 RNA poly 38.1 93 0.002 26.7 5.9 31 84-115 133-163 (169)
100 KOG2009 Transcription initiati 37.3 31 0.00067 37.3 3.2 52 64-115 406-457 (584)
101 PRK12523 RNA polymerase sigma 36.9 1.2E+02 0.0027 26.2 6.6 40 79-119 128-167 (172)
102 cd08803 Death_ank3 Death domai 36.8 57 0.0012 26.3 4.0 31 75-106 4-34 (84)
103 cd08317 Death_ank Death domain 36.3 43 0.00094 26.4 3.3 30 75-105 4-33 (84)
104 PRK12515 RNA polymerase sigma 35.8 99 0.0021 27.2 5.9 31 84-115 145-175 (189)
105 PRK12529 RNA polymerase sigma 35.5 1.2E+02 0.0027 26.4 6.4 35 83-118 140-174 (178)
106 PRK12531 RNA polymerase sigma 34.4 1.2E+02 0.0027 26.8 6.2 30 84-114 155-184 (194)
107 TIGR02948 SigW_bacill RNA poly 34.0 1.1E+02 0.0023 26.5 5.7 29 85-114 151-179 (187)
108 PRK15328 invasion protein IagB 33.9 90 0.0019 28.2 5.2 46 77-122 98-145 (160)
109 PRK09047 RNA polymerase factor 33.3 1.3E+02 0.0029 25.2 6.1 30 84-114 120-149 (161)
110 KOG3841 TEF-1 and related tran 33.2 88 0.0019 32.4 5.5 58 65-122 74-152 (455)
111 PRK09642 RNA polymerase sigma 33.1 1.4E+02 0.0029 25.4 6.1 30 84-114 120-149 (160)
112 PRK09645 RNA polymerase sigma 32.7 1.4E+02 0.0031 25.5 6.3 30 84-114 132-161 (173)
113 PRK12527 RNA polymerase sigma 32.6 1.6E+02 0.0034 25.0 6.4 31 85-116 120-150 (159)
114 PRK09648 RNA polymerase sigma 32.3 1.4E+02 0.0029 26.3 6.1 30 84-114 153-182 (189)
115 cd08318 Death_NMPP84 Death dom 32.0 66 0.0014 25.7 3.7 26 78-104 10-35 (86)
116 PRK11923 algU RNA polymerase s 30.5 1.3E+02 0.0029 26.3 5.8 29 85-114 153-181 (193)
117 PRK09637 RNA polymerase sigma 30.4 1.4E+02 0.0029 26.5 5.8 30 84-114 120-149 (181)
118 PRK09413 IS2 repressor TnpA; R 30.1 64 0.0014 27.1 3.5 45 13-61 9-53 (121)
119 PF02954 HTH_8: Bacterial regu 29.8 1E+02 0.0023 21.1 4.0 34 73-107 5-38 (42)
120 TIGR02943 Sig70_famx1 RNA poly 29.1 1.3E+02 0.0029 26.7 5.5 34 80-114 141-174 (188)
121 PRK09646 RNA polymerase sigma 28.9 1.9E+02 0.004 25.7 6.5 30 85-115 157-186 (194)
122 PRK12514 RNA polymerase sigma 28.6 1.8E+02 0.0039 25.2 6.2 29 85-114 144-172 (179)
123 PF11427 HTH_Tnp_Tc3_1: Tc3 tr 28.6 1.3E+02 0.0029 22.2 4.5 35 73-108 7-41 (50)
124 PRK05602 RNA polymerase sigma 28.4 1.7E+02 0.0038 25.5 6.1 30 84-114 142-171 (186)
125 smart00005 DEATH DEATH domain, 28.0 78 0.0017 24.4 3.4 30 74-104 4-34 (88)
126 cd08804 Death_ank2 Death domai 27.9 83 0.0018 25.1 3.6 31 75-106 4-34 (84)
127 cd08779 Death_PIDD Death Domai 27.1 46 0.001 26.7 2.0 21 76-96 3-23 (86)
128 PRK12530 RNA polymerase sigma 26.9 1.8E+02 0.004 25.7 6.1 29 85-114 149-177 (189)
129 smart00344 HTH_ASNC helix_turn 26.9 39 0.00086 27.1 1.6 44 20-65 3-46 (108)
130 PRK12536 RNA polymerase sigma 26.8 2.1E+02 0.0045 25.0 6.3 31 83-114 142-172 (181)
131 PRK13919 putative RNA polymera 26.6 2E+02 0.0043 25.0 6.2 29 85-114 150-178 (186)
132 PRK12516 RNA polymerase sigma 26.2 2E+02 0.0044 25.6 6.2 35 79-114 125-159 (187)
133 COG2963 Transposase and inacti 26.0 2.1E+02 0.0045 23.4 5.8 43 67-110 5-48 (116)
134 KOG3554 Histone deacetylase co 25.4 83 0.0018 33.5 3.9 41 69-109 287-328 (693)
135 cd08777 Death_RIP1 Death Domai 25.2 89 0.0019 25.2 3.3 30 76-106 3-32 (86)
136 KOG2009 Transcription initiati 24.9 71 0.0015 34.6 3.4 48 10-59 405-452 (584)
137 PRK12547 RNA polymerase sigma 24.3 2.7E+02 0.0058 23.9 6.4 30 84-114 126-155 (164)
138 PRK12526 RNA polymerase sigma 24.2 2.4E+02 0.0053 25.3 6.4 29 86-115 169-197 (206)
139 PRK12524 RNA polymerase sigma 24.1 1.8E+02 0.004 25.7 5.5 30 84-114 150-179 (196)
140 TIGR02983 SigE-fam_strep RNA p 23.9 2.4E+02 0.0052 23.8 6.0 40 74-114 114-153 (162)
141 TIGR02952 Sig70_famx2 RNA poly 23.9 2.3E+02 0.0051 23.9 6.0 29 85-114 137-165 (170)
142 COG1522 Lrp Transcriptional re 23.7 1.6E+02 0.0034 25.0 4.8 44 72-116 7-51 (154)
143 PRK12528 RNA polymerase sigma 23.7 2.1E+02 0.0046 24.3 5.6 30 83-113 126-155 (161)
144 COG1522 Lrp Transcriptional re 23.5 40 0.00087 28.6 1.1 46 19-66 7-52 (154)
145 TIGR02999 Sig-70_X6 RNA polyme 23.4 2.5E+02 0.0054 24.2 6.2 29 85-114 149-177 (183)
146 PF01710 HTH_Tnp_IS630: Transp 23.3 1.1E+02 0.0023 25.7 3.7 55 21-78 58-112 (119)
147 PRK09649 RNA polymerase sigma 23.3 1.8E+02 0.004 25.6 5.3 29 85-114 145-173 (185)
148 PRK06759 RNA polymerase factor 23.2 2.2E+02 0.0047 23.8 5.6 29 85-114 121-149 (154)
149 TIGR02950 SigM_subfam RNA poly 22.9 74 0.0016 26.6 2.6 28 86-114 121-148 (154)
150 PF09420 Nop16: Ribosome bioge 22.7 98 0.0021 27.6 3.5 48 12-60 112-162 (164)
151 PRK09651 RNA polymerase sigma 22.5 1.7E+02 0.0037 25.4 4.9 29 85-114 134-162 (172)
152 PRK12532 RNA polymerase sigma 22.4 2.3E+02 0.0049 25.0 5.7 30 84-114 150-179 (195)
153 PLN03142 Probable chromatin-re 22.3 1.6E+02 0.0034 34.2 5.7 46 68-113 825-871 (1033)
154 TIGR02984 Sig-70_plancto1 RNA 22.1 2.6E+02 0.0057 24.0 6.0 30 84-114 154-183 (189)
155 PRK09638 RNA polymerase sigma 21.7 1.2E+02 0.0027 26.0 3.8 29 85-114 141-169 (176)
156 TIGR02960 SigX5 RNA polymerase 21.2 2.2E+02 0.0048 27.2 5.8 29 85-114 157-185 (324)
157 PRK01905 DNA-binding protein F 20.7 2.5E+02 0.0054 21.9 5.0 36 71-107 35-70 (77)
158 cd08805 Death_ank1 Death domai 20.7 1.5E+02 0.0033 24.0 3.8 22 75-96 4-25 (84)
159 PRK12542 RNA polymerase sigma 20.6 3E+02 0.0064 24.0 6.1 30 84-114 136-165 (185)
160 PRK00118 putative DNA-binding 20.0 2.9E+02 0.0062 23.3 5.5 40 72-112 19-58 (104)
No 1
>PLN03091 hypothetical protein; Provisional
Probab=100.00 E-value=3.6e-37 Score=306.37 Aligned_cols=125 Identities=56% Similarity=1.053 Sum_probs=120.0
Q ss_pred CCCCCccCCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHH
Q 019307 1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIH 80 (343)
Q Consensus 1 MGR~pccdK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~ 80 (343)
|||++||+|+.++||+||+|||++|+++|.+||.++|..||+.++.+|+++|||+||.+||+|.+++++||+|||++|++
T Consensus 1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe 80 (459)
T PLN03091 1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80 (459)
T ss_pred CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998778999999999999999999999999999999999
Q ss_pred HHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCC
Q 019307 81 LQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDG 125 (343)
Q Consensus 81 lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~ 125 (343)
++++||++|..||++|||||+++||+||+.+|++++++.+..+..
T Consensus 81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t 125 (459)
T PLN03091 81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNT 125 (459)
T ss_pred HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999999999877666543
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=100.00 E-value=6.6e-37 Score=286.28 Aligned_cols=123 Identities=60% Similarity=1.184 Sum_probs=116.7
Q ss_pred CCCccCCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHH
Q 019307 3 RPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQ 82 (343)
Q Consensus 3 R~pccdK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv 82 (343)
|+|||+|+++++++||+|||++|+++|++||..+|..||+.++.+|+++|||+||.++|+|.+++++||+|||++|++++
T Consensus 14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~ 93 (249)
T PLN03212 14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLH 93 (249)
T ss_pred CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999866899999999999999999999999999999999999
Q ss_pred HHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCC
Q 019307 83 ALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDG 125 (343)
Q Consensus 83 ~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~ 125 (343)
..||++|+.||++|||||+++||+||+.++++++.+....+..
T Consensus 94 ~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~ 136 (249)
T PLN03212 94 RLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQT 136 (249)
T ss_pred HhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCC
Confidence 9999999999999999999999999999999998876655433
No 3
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=100.00 E-value=1.1e-35 Score=278.00 Aligned_cols=109 Identities=61% Similarity=1.078 Sum_probs=106.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcHHH
Q 019307 12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAA 91 (343)
Q Consensus 12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~ 91 (343)
+.||+||+|||++|+++|++||+++|..|++.+|++|++++||+||.|||+|++++|.||+|||++|++|+..+|++|+.
T Consensus 7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~ 86 (238)
T KOG0048|consen 7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSL 86 (238)
T ss_pred ccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCChHHHHHHHHHHhHHHHhhhc
Q 019307 92 IASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120 (343)
Q Consensus 92 IA~~LpgRT~~qcKnRW~~~Lkkklkk~q 120 (343)
||++|||||+|+|||+|+..|++++.+++
T Consensus 87 IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 87 IAGRLPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred HHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999887
No 4
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.79 E-value=3.9e-19 Score=183.26 Aligned_cols=167 Identities=22% Similarity=0.356 Sum_probs=122.8
Q ss_pred CCCCCccCCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHH
Q 019307 1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIH 80 (343)
Q Consensus 1 MGR~pccdK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~ 80 (343)
+||..-.-.|++++|+||++||.+|+.+|.+||..+|-+|-..+| +|+..|||+||.|.|+...|.+.|+-.||+.||.
T Consensus 347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~ 425 (939)
T KOG0049|consen 347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLY 425 (939)
T ss_pred hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHH
Confidence 366666677999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCCCCCCCCCCCCccccccchhhhhhhhhhhHHHHHH
Q 019307 81 LQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQ 159 (343)
Q Consensus 81 lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~~~~~~~~~ss~ss~~~~~~qwe~rLqtdi~~ak~ 159 (343)
+|.+|| ++|.+||..||.||..|.+.|=...+.-++.-.+....+......+..+.-........|-.++|- ....-.
T Consensus 426 ~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~rl~~~~~~~v~~~~sg~rS~eede~eq~dWv~a~Q~-p~e~~~ 504 (939)
T KOG0049|consen 426 AVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLRLAAGFCNAVDAMKSGRRSPEEDELEQEDWVEAEQI-PNELMK 504 (939)
T ss_pred HHHHHccchHHHHHHHccccchhHHHHHHHHHHHHHHHHhcCCccccccccccCCCccccccchhhhHHhhhc-chhchh
Confidence 999999 789999999999999776655444444443322222111110111101111122334468887772 222234
Q ss_pred HHHHHhccCC
Q 019307 160 ALCEALSLDK 169 (343)
Q Consensus 160 al~~als~~~ 169 (343)
.+.+.+..+.
T Consensus 505 ~~~~~~an~n 514 (939)
T KOG0049|consen 505 EVYEKFANEN 514 (939)
T ss_pred hhhhhhcccC
Confidence 5555555655
No 5
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.66 E-value=8.3e-17 Score=166.30 Aligned_cols=120 Identities=22% Similarity=0.436 Sum_probs=109.1
Q ss_pred CccCC-----CCCccCCCCHHHHHHHHHHHHHhCCC---CCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHH
Q 019307 5 PCCDK-----IGVKKGPWTPEEDIILVSYIQEHGPG---NWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEK 76 (343)
Q Consensus 5 pccdK-----~~ikKG~WT~EEDe~L~~lV~~~G~~---nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~ 76 (343)
+|..| ..+++..||.|||.+|+.+|++...+ +|++|-..|+ +|+..|...||...|+|.+++|+||.+||.
T Consensus 291 QC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ymp-gr~~~qLI~R~~~~LdPsikhg~wt~~ED~ 369 (939)
T KOG0049|consen 291 QCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMP-GRTRQQLITRFSHTLDPSVKHGRWTDQEDV 369 (939)
T ss_pred HHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcC-CcchhhhhhhheeccCccccCCCCCCHHHH
Confidence 46555 34677999999999999999998654 8999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhCC-cHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCC
Q 019307 77 MIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDG 125 (343)
Q Consensus 77 ~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~ 125 (343)
+|+.+|.+||. .|.+|-..+|||++.|||.||.+.|....|+..+...+
T Consensus 370 ~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~e 419 (939)
T KOG0049|consen 370 LLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVE 419 (939)
T ss_pred HHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecc
Confidence 99999999995 69999999999999999999999999998887776543
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.63 E-value=2.2e-16 Score=117.44 Aligned_cols=60 Identities=40% Similarity=0.876 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHH
Q 019307 17 WTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMI 78 (343)
Q Consensus 17 WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~L 78 (343)
||+|||++|+++|..|| .+|..||..|| .|++.+|+.||.++|+|.+++++||++||.+|
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 99999999999999999 59999999998 89999999999999999999999999999987
No 7
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.57 E-value=1.6e-15 Score=155.46 Aligned_cols=107 Identities=29% Similarity=0.536 Sum_probs=102.4
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcH
Q 019307 10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRW 89 (343)
Q Consensus 10 ~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkW 89 (343)
..++.|.|+..||+.|..+|+.+|+++|..||..+. .|++++|+.||+++++|.+++..|+.+||..|+.+..++|..|
T Consensus 16 ~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w 94 (512)
T COG5147 16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW 94 (512)
T ss_pred ceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence 467889999999999999999999999999999998 6899999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCChHHHHHHHHHHhHHHHh
Q 019307 90 AAIASYLPQRTDNDIKNYWNTHLKKKLK 117 (343)
Q Consensus 90 s~IA~~LpgRT~~qcKnRW~~~Lkkklk 117 (343)
..||.++++||..+|.+||...+.....
T Consensus 95 stia~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 95 STIADYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred hhhccccCccchHHHHHHHHHHhhhhhc
Confidence 9999999999999999999998887665
No 8
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=2.5e-15 Score=152.35 Aligned_cols=110 Identities=25% Similarity=0.545 Sum_probs=103.3
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcH
Q 019307 10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRW 89 (343)
Q Consensus 10 ~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkW 89 (343)
.-++.|.|+.-||+.|..+|++||.+.|.+|++.+. ..+.+||+.||..+|+|.|++..|+.|||.+||++...+...|
T Consensus 3 i~~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qw 81 (617)
T KOG0050|consen 3 IEIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQW 81 (617)
T ss_pred eEEecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCcc
Confidence 457889999999999999999999999999999998 8899999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCChHHHHHHHHHHhHHHHhhhcC
Q 019307 90 AAIASYLPQRTDNDIKNYWNTHLKKKLKKLQT 121 (343)
Q Consensus 90 s~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~ 121 (343)
..|+..| ||+.+||-.||+++|.........
T Consensus 82 rtIa~i~-gr~~~qc~eRy~~ll~~~~s~~~~ 112 (617)
T KOG0050|consen 82 RTIADIM-GRTSQQCLERYNNLLDVYVSYHYH 112 (617)
T ss_pred chHHHHh-hhhHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999 999999999999999887655443
No 9
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.41 E-value=1.9e-13 Score=141.89 Aligned_cols=101 Identities=28% Similarity=0.604 Sum_probs=92.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCC--ccCCCChHHHHHHHHHHH-------
Q 019307 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGI--KRGNFTDHEEKMIIHLQA------- 83 (343)
Q Consensus 13 kKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~i--krg~WT~EED~~Ll~lv~------- 83 (343)
++|.||+||++.|..+|.++| +.|..|+..|+ |.+..||+||.+|..++- +++.||.||++.|+++|.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~ 459 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL 459 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999 69999999997 999999999999998884 999999999999999995
Q ss_pred Hh-------------------CCcHHHHHhhCCCCChHHHHHHHHHHhHHHH
Q 019307 84 LL-------------------GNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 116 (343)
Q Consensus 84 ~~-------------------GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkkl 116 (343)
++ +.+|..|+..+..|+..|||.+|+.++....
T Consensus 460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s 511 (607)
T KOG0051|consen 460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPS 511 (607)
T ss_pred cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHH
Confidence 33 1359999999999999999999999887654
No 10
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.37 E-value=9e-13 Score=94.56 Aligned_cols=46 Identities=26% Similarity=0.564 Sum_probs=42.0
Q ss_pred cCCCChHHHHHHHHHHHHhCCc-HHHHHhhCC-CCChHHHHHHHHHHh
Q 019307 67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~Gnk-Ws~IA~~Lp-gRT~~qcKnRW~~~L 112 (343)
|++||+|||++|++++.+||.+ |..||..|| +||..||++||++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999988 999999999 999999999999875
No 11
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.36 E-value=1.6e-13 Score=98.51 Aligned_cols=48 Identities=38% Similarity=0.741 Sum_probs=43.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcc
Q 019307 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 (343)
Q Consensus 14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L 61 (343)
|++||+|||++|+++|.+||.++|..||..|+.+|+..||+.||.++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998679999999988999999999999875
No 12
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.28 E-value=2.7e-12 Score=121.10 Aligned_cols=65 Identities=23% Similarity=0.426 Sum_probs=59.8
Q ss_pred CCCccCCCChHHHHHHHHHHHHhC-CcHHHHHhhC-CCCChHHHHHHHHHHhHHHHhhhcCCCCCCC
Q 019307 63 PGIKRGNFTDHEEKMIIHLQALLG-NRWAAIASYL-PQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQ 127 (343)
Q Consensus 63 P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~L-pgRT~~qcKnRW~~~Lkkklkk~q~~~~~~~ 127 (343)
+++++++||+|||++|+++|++|| ++|..||+.+ ++||++|||.||.++|++.+++..++.+++.
T Consensus 21 ~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~ 87 (249)
T PLN03212 21 MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEED 87 (249)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHH
Confidence 578999999999999999999999 5899999998 6999999999999999999999988876543
No 13
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.27 E-value=4.3e-12 Score=94.34 Aligned_cols=51 Identities=31% Similarity=0.637 Sum_probs=42.8
Q ss_pred CChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhc
Q 019307 70 FTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120 (343)
Q Consensus 70 WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q 120 (343)
||+|||.+|+++|.+||++|..||.+|+.||..+|++||+..|++++.+..
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~ 51 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGP 51 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSS
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCC
Confidence 999999999999999999999999999779999999999997776554433
No 14
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.23 E-value=1e-12 Score=123.33 Aligned_cols=65 Identities=18% Similarity=0.327 Sum_probs=59.2
Q ss_pred CCCccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC-CCChHHHHHHHHHHhHHHHhhhcCCCCCCC
Q 019307 63 PGIKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLP-QRTDNDIKNYWNTHLKKKLKKLQTGSDGGQ 127 (343)
Q Consensus 63 P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp-gRT~~qcKnRW~~~Lkkklkk~q~~~~~~~ 127 (343)
|.+.+|+||+|||.+|+++|++|| ++|..|++.++ +|++++||.||.++|++.+++..++.++..
T Consensus 5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~ 71 (238)
T KOG0048|consen 5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEED 71 (238)
T ss_pred ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHH
Confidence 345579999999999999999999 56999999999 999999999999999999999999877543
No 15
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.19 E-value=3.4e-11 Score=83.36 Aligned_cols=47 Identities=38% Similarity=0.773 Sum_probs=44.3
Q ss_pred cCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307 67 RGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLK 113 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (343)
+++||++||.+|+.++.+|| .+|..||..|++||+.+|++||+.+++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999 999999999999999999999998764
No 16
>PLN03091 hypothetical protein; Provisional
Probab=99.13 E-value=2.2e-11 Score=122.67 Aligned_cols=64 Identities=16% Similarity=0.347 Sum_probs=58.7
Q ss_pred CCCccCCCChHHHHHHHHHHHHhC-CcHHHHHhhC-CCCChHHHHHHHHHHhHHHHhhhcCCCCCC
Q 019307 63 PGIKRGNFTDHEEKMIIHLQALLG-NRWAAIASYL-PQRTDNDIKNYWNTHLKKKLKKLQTGSDGG 126 (343)
Q Consensus 63 P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~L-pgRT~~qcKnRW~~~Lkkklkk~q~~~~~~ 126 (343)
+.+++++||+|||++|+++|.+|| ++|..||+.+ ++|+++|||.||+++|++.+++..++.+++
T Consensus 10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED 75 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEE 75 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHH
Confidence 578999999999999999999999 5799999988 499999999999999999999988887654
No 17
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.08 E-value=2.6e-10 Score=77.86 Aligned_cols=44 Identities=30% Similarity=0.639 Sum_probs=41.8
Q ss_pred CCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHh
Q 019307 69 NFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHL 112 (343)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~L 112 (343)
+||++||..|+.++.+|| .+|..||..|++||..+|++||++++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999999 89999999999999999999998763
No 18
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.04 E-value=1.3e-10 Score=80.44 Aligned_cols=48 Identities=38% Similarity=0.836 Sum_probs=44.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhccc
Q 019307 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLR 62 (343)
Q Consensus 14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~ 62 (343)
+++||++||++|+.+|..||..+|..|+..++ +|++.+|+.||.+++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence 47899999999999999999779999999999 9999999999998764
No 19
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.89 E-value=9.3e-10 Score=75.13 Aligned_cols=45 Identities=40% Similarity=0.838 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcc
Q 019307 16 PWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 (343)
Q Consensus 16 ~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L 61 (343)
+||+|||+.|+.++..||..+|..|+..++ +|+..+|+.||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence 599999999999999999779999999998 899999999998753
No 20
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=98.81 E-value=6.1e-09 Score=108.78 Aligned_cols=102 Identities=25% Similarity=0.316 Sum_probs=85.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhCC-----------------------CCCceecccCCCCCChhhhhhhhhhcccCCC-cc
Q 019307 12 VKKGPWTPEEDIILVSYIQEHGP-----------------------GNWRSVPTNTGLLRCSKSCRLRWTNYLRPGI-KR 67 (343)
Q Consensus 12 ikKG~WT~EEDe~L~~lV~~~G~-----------------------~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~i-kr 67 (343)
++-+.|+++||..|...|..|-. +-|..|...|| .|+.+.++.+-++...|-- ++
T Consensus 306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~~r 384 (607)
T KOG0051|consen 306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFENKR 384 (607)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccccc
Confidence 44589999999999999988721 02677888898 5999998884444444433 99
Q ss_pred CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHH
Q 019307 68 GNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (343)
Q Consensus 68 g~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkk 115 (343)
|.||+||++.|..+|.++|+.|..|++.| ||.+.+|+.||.++++..
T Consensus 385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g 431 (607)
T KOG0051|consen 385 GKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCG 431 (607)
T ss_pred CCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccc
Confidence 99999999999999999999999999999 999999999999987653
No 21
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.33 E-value=7.3e-08 Score=99.67 Aligned_cols=96 Identities=27% Similarity=0.603 Sum_probs=84.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccC--CCccCCCChHHHHHHHHHHHHhC----
Q 019307 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP--GIKRGNFTDHEEKMIIHLQALLG---- 86 (343)
Q Consensus 13 kKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P--~ikrg~WT~EED~~Ll~lv~~~G---- 86 (343)
.+|.||+||+..|...+.++| ..|..|...++ |-+..||+||.+|..+ .+++++|+.||+.+|...+...-
T Consensus 290 ~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~~--rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~~ 366 (512)
T COG5147 290 QRGKWTKEEEQELAKLVVEHG-GSWTEIGKLLG--RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQ 366 (512)
T ss_pred hhccCcccccccccccccccc-chhhHhhhhhc--cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHHh
Confidence 479999999999999999999 59999998876 9999999999999988 57888999999999998876332
Q ss_pred ----CcHHHHHhhCCCCChHHHHHHHHHH
Q 019307 87 ----NRWAAIASYLPQRTDNDIKNYWNTH 111 (343)
Q Consensus 87 ----nkWs~IA~~LpgRT~~qcKnRW~~~ 111 (343)
..|..|+..+++|...+|+.++..+
T Consensus 367 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 395 (512)
T COG5147 367 QSSRILWLLIAQNIRNRLQHHCRDKYGVL 395 (512)
T ss_pred hhhhhhHHHHHHhhhccccCCCCCccccc
Confidence 3599999999999888888776543
No 22
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.80 E-value=1.8e-05 Score=59.61 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=43.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCC---ceecccCCCCC-Chhhhhhhhhhcc
Q 019307 13 KKGPWTPEEDIILVSYIQEHGPGNW---RSVPTNTGLLR-CSKSCRLRWTNYL 61 (343)
Q Consensus 13 kKG~WT~EEDe~L~~lV~~~G~~nW---~~IA~~l~~~R-t~kQCR~RW~n~L 61 (343)
++-.||+||.++++++|+.+|.++| +.|+..|...| +..||+.|++.|.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999998899 99999887567 9999999998874
No 23
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=3.9e-05 Score=79.22 Aligned_cols=62 Identities=27% Similarity=0.492 Sum_probs=57.3
Q ss_pred CccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCCC
Q 019307 65 IKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGG 126 (343)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~~ 126 (343)
++.|-|+.-||++|-..|.+|| +.|+.|++.++-.|+.||++||+..+.+.+++..+..+.+
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eed 67 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREED 67 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHH
Confidence 5778999999999999999999 6799999999999999999999999999999988886543
No 24
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.51 E-value=0.00015 Score=73.62 Aligned_cols=48 Identities=23% Similarity=0.449 Sum_probs=43.7
Q ss_pred CccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHh
Q 019307 65 IKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHL 112 (343)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~L 112 (343)
+-...||.+||.+||+++..|| ++|..||.++..|+..+|+.+|.+++
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence 4456899999999999999999 89999999999999999999997654
No 25
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.49 E-value=4.9e-05 Score=77.09 Aligned_cols=49 Identities=22% Similarity=0.635 Sum_probs=45.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcc
Q 019307 12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 (343)
Q Consensus 12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L 61 (343)
+-..-||.+|+-+|++++..||.|||..||.++| .|+..+|+++|.+++
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence 3457899999999999999999999999999999 999999999999865
No 26
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.42 E-value=0.00038 Score=52.44 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=40.5
Q ss_pred cCCCChHHHHHHHHHHHHhCC-cH---HHHHhhCC-CC-ChHHHHHHHHHHh
Q 019307 67 RGNFTDHEEKMIIHLQALLGN-RW---AAIASYLP-QR-TDNDIKNYWNTHL 112 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~Gn-kW---s~IA~~Lp-gR-T~~qcKnRW~~~L 112 (343)
+-.||+||...+++++..+|. +| ..|+..|. .| |..||+.+...+.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 557999999999999999996 99 99999884 45 9999999987654
No 27
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=97.28 E-value=0.002 Score=59.86 Aligned_cols=103 Identities=20% Similarity=0.421 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCceecccCCC--CCChhhhhhhhhhcc-cCCC--------------------ccCCCCh
Q 019307 16 PWTPEEDIILVSYIQEHGPGNWRSVPTNTGL--LRCSKSCRLRWTNYL-RPGI--------------------KRGNFTD 72 (343)
Q Consensus 16 ~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~--~Rt~kQCR~RW~n~L-~P~i--------------------krg~WT~ 72 (343)
+|+++.|-.|+.+|..-. +-..|+..+.. .-|-..+.+||+..| +|.+ .+.+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 699999999999998765 55566554432 236788899999876 3322 3458999
Q ss_pred HHHHHHHHHHHHhCC---cHHHHHh-----hCCCCChHHHHHHHHHHhHHHHhhhc
Q 019307 73 HEEKMIIHLQALLGN---RWAAIAS-----YLPQRTDNDIKNYWNTHLKKKLKKLQ 120 (343)
Q Consensus 73 EED~~Ll~lv~~~Gn---kWs~IA~-----~LpgRT~~qcKnRW~~~Lkkklkk~q 120 (343)
+||++|......... .+.+|=. +-++||++++.++|..+.+..+-.-|
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~DQ 134 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLPDQ 134 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhhcc
Confidence 999999997765542 4777732 23789999999999976666554433
No 28
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=97.15 E-value=0.00065 Score=61.11 Aligned_cols=51 Identities=16% Similarity=0.286 Sum_probs=45.0
Q ss_pred ccCCCChHHHHHHHHHHHHhC---C----cHHHHHhhCCCCChHHHHHHHHHHhHHHHh
Q 019307 66 KRGNFTDHEEKMIIHLQALLG---N----RWAAIASYLPQRTDNDIKNYWNTHLKKKLK 117 (343)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G---n----kWs~IA~~LpgRT~~qcKnRW~~~Lkkklk 117 (343)
+...||.|||.+|.+.|..|= . -+.+|+..| +||...|.-|||.++++++.
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~ 60 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYE 60 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHH
Confidence 456899999999999999883 2 389999999 99999999999999998764
No 29
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.09 E-value=0.00055 Score=53.99 Aligned_cols=54 Identities=39% Similarity=0.610 Sum_probs=37.2
Q ss_pred cCCCChHHHHHHHHHHHH------hC--C------cHHHHHhhC----CCCChHHHHHHHHHHhHHHHhhhcC
Q 019307 67 RGNFTDHEEKMIIHLQAL------LG--N------RWAAIASYL----PQRTDNDIKNYWNTHLKKKLKKLQT 121 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~------~G--n------kWs~IA~~L----pgRT~~qcKnRW~~~Lkkklkk~q~ 121 (343)
|..||.+|...||+++.. ++ + -|..||..| ..||+.||+++|+++ ++.+++...
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L-~~~Yk~~k~ 72 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL-KKKYKKIKD 72 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH-HHHHHCSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHHHh
Confidence 357999999999999877 21 1 399999987 379999999999995 555665544
No 30
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.84 E-value=0.0019 Score=49.93 Aligned_cols=51 Identities=18% Similarity=0.405 Sum_probs=32.9
Q ss_pred cCCCChHHHHHHHHHHHHhC--------Cc-HHHHHhhCC-CCChHHHHHHHHHHhHHHHh
Q 019307 67 RGNFTDHEEKMIIHLQALLG--------NR-WAAIASYLP-QRTDNDIKNYWNTHLKKKLK 117 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G--------nk-Ws~IA~~Lp-gRT~~qcKnRW~~~Lkkklk 117 (343)
|.+||.+||..|++.|+.+. |+ |.+++..-+ .+|-...|+||...|+.+..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~~ 62 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRPR 62 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence 46899999999999997652 22 999999877 99999999999988877643
No 31
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.63 E-value=0.0009 Score=68.73 Aligned_cols=46 Identities=22% Similarity=0.578 Sum_probs=43.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhc
Q 019307 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60 (343)
Q Consensus 13 kKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~ 60 (343)
....||.+|..+|++.|+.|| .+|.+||.++| .|+..||..||.+.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVg-tKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVG-TKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhC-CCCHHHHHHHHHcC
Confidence 567999999999999999999 59999999999 99999999999863
No 32
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.63 E-value=0.0024 Score=66.70 Aligned_cols=46 Identities=15% Similarity=0.360 Sum_probs=43.0
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHH
Q 019307 66 KRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 111 (343)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~ 111 (343)
-+..||++|..+|++.+..||.+|.+||.++..||..||-.++..+
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence 4568999999999999999999999999999999999999998764
No 33
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.60 E-value=0.0021 Score=66.14 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=47.0
Q ss_pred cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHH--hHHHHhhhcC
Q 019307 67 RGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH--LKKKLKKLQT 121 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~--Lkkklkk~q~ 121 (343)
..+||.+|..+|++.++.||..|.+||+++..||..||--||-++ ..+-+.+++.
T Consensus 279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~LPieD~~l~k~~~ 335 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIEDNYLSKGDG 335 (531)
T ss_pred cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcCCcchhhhhcccC
Confidence 348999999999999999999999999999999999999999864 2444555544
No 34
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.40 E-value=0.002 Score=67.29 Aligned_cols=47 Identities=23% Similarity=0.622 Sum_probs=43.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhc
Q 019307 12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60 (343)
Q Consensus 12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~ 60 (343)
--++.||.+|+.+|+++|+.|| .+|.+|+.+++ .|+..||..|+.+.
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg-~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYG-DDWNKVADHVG-TKSQEQCILKFLRL 297 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccC-CCCHHHHHHHHHhc
Confidence 3468999999999999999999 59999999999 99999999998763
No 35
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=96.35 E-value=0.0049 Score=56.06 Aligned_cols=51 Identities=14% Similarity=0.303 Sum_probs=43.4
Q ss_pred CccCCCChHHHHHHHHHHHHhCCc-------HHHHHhhCCCCChHHHHHHHHHHhHHHH
Q 019307 65 IKRGNFTDHEEKMIIHLQALLGNR-------WAAIASYLPQRTDNDIKNYWNTHLKKKL 116 (343)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~Gnk-------Ws~IA~~LpgRT~~qcKnRW~~~Lkkkl 116 (343)
.+...||.|||.+|-+.|..|+.. ...++..| +||..+|..|||.++++++
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y 60 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY 60 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence 356789999999999999888732 67778888 9999999999999999764
No 36
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=96.21 E-value=0.016 Score=44.91 Aligned_cols=51 Identities=27% Similarity=0.503 Sum_probs=41.2
Q ss_pred cCCCChHHHHHHHHHHHHhC----C-------------cHHHHHhhC-----CCCChHHHHHHHHHHhHHHHh
Q 019307 67 RGNFTDHEEKMIIHLQALLG----N-------------RWAAIASYL-----PQRTDNDIKNYWNTHLKKKLK 117 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G----n-------------kWs~IA~~L-----pgRT~~qcKnRW~~~Lkkklk 117 (343)
...||.+|..+|++++.+|. + -|..|+..| +.||..+||.+|.++...--+
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk 74 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK 74 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35799999999999998873 1 299999876 369999999999987665433
No 37
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.14 E-value=0.003 Score=48.88 Aligned_cols=51 Identities=27% Similarity=0.497 Sum_probs=33.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCC------C--CCceecccCCCCCChhhhhhhhhhcccCC
Q 019307 14 KGPWTPEEDIILVSYIQEHGP------G--NWRSVPTNTGLLRCSKSCRLRWTNYLRPG 64 (343)
Q Consensus 14 KG~WT~EEDe~L~~lV~~~G~------~--nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ 64 (343)
+-+||.|||+.|+++|..+.. + -|++++..-++.++..+-|+||...|.+.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 457999999999999976632 1 29999887766899999999999988754
No 38
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.04 E-value=0.0018 Score=58.23 Aligned_cols=50 Identities=28% Similarity=0.658 Sum_probs=42.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhCC--C----CCceecccCCCCCChhhhhhhhhhcccC
Q 019307 12 VKKGPWTPEEDIILVSYIQEHGP--G----NWRSVPTNTGLLRCSKSCRLRWTNYLRP 63 (343)
Q Consensus 12 ikKG~WT~EEDe~L~~lV~~~G~--~----nW~~IA~~l~~~Rt~kQCR~RW~n~L~P 63 (343)
.++..||.|||.+|.+.|-+|-. + ...+|+..++ ||+..|.-||+.+++.
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk 57 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK 57 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence 46789999999999999999931 1 4788999886 9999999999998863
No 39
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.76 E-value=0.0027 Score=49.96 Aligned_cols=48 Identities=27% Similarity=0.630 Sum_probs=32.7
Q ss_pred cCCCCHHHHHHHHHHHHH--h----C--CC-----CCceecccC---CCCCChhhhhhhhhhcc
Q 019307 14 KGPWTPEEDIILVSYIQE--H----G--PG-----NWRSVPTNT---GLLRCSKSCRLRWTNYL 61 (343)
Q Consensus 14 KG~WT~EEDe~L~~lV~~--~----G--~~-----nW~~IA~~l---~~~Rt~kQCR~RW~n~L 61 (343)
+-.||.+|...|+.++.. + + .. -|..||..| |..|++.||+.||.+..
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~ 64 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK 64 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 357999999999999887 2 1 11 399999775 56799999999998743
No 40
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.66 E-value=0.014 Score=57.96 Aligned_cols=48 Identities=25% Similarity=0.479 Sum_probs=43.2
Q ss_pred ccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307 66 KRGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLK 113 (343)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (343)
--..|+..|+.+|++....+| ++|..||.+++.|+..+||.+|..+..
T Consensus 62 ~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 62 GEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 345799999999999999999 899999999999999999999976544
No 41
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=95.30 E-value=0.042 Score=62.02 Aligned_cols=99 Identities=11% Similarity=0.313 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhh-------hhhh------cc---------------------
Q 019307 16 PWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRL-------RWTN------YL--------------------- 61 (343)
Q Consensus 16 ~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~-------RW~n------~L--------------------- 61 (343)
.|+.-+=..++.+..+||..+-..||..+. +++...++. ||.. ++
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~ 904 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG 904 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888889999888899999987 777766653 2211 00
Q ss_pred ----------------cCCCccCCCChHHHHHHHHHHHHhC-CcHHHHHh------------hCCCCChHHHHHHHHHHh
Q 019307 62 ----------------RPGIKRGNFTDHEEKMIIHLQALLG-NRWAAIAS------------YLPQRTDNDIKNYWNTHL 112 (343)
Q Consensus 62 ----------------~P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~------------~LpgRT~~qcKnRW~~~L 112 (343)
.+..++..||+|||..|+-++.+|| .+|..|-. ++..||+..|..|.++++
T Consensus 905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~ 984 (1033)
T PLN03142 905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI 984 (1033)
T ss_pred HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence 0233445699999999999999999 68999843 235799999999999988
Q ss_pred HHH
Q 019307 113 KKK 115 (343)
Q Consensus 113 kkk 115 (343)
+--
T Consensus 985 ~~~ 987 (1033)
T PLN03142 985 RLI 987 (1033)
T ss_pred HHH
Confidence 764
No 42
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.15 E-value=0.0069 Score=59.99 Aligned_cols=48 Identities=19% Similarity=0.563 Sum_probs=44.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhccc
Q 019307 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLR 62 (343)
Q Consensus 14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~ 62 (343)
---|+.+|+.+|+++..-.|-+||..||..+| .|....|+.+|..++.
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~ 110 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence 34799999999999999999999999999999 9999999999998765
No 43
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=94.42 E-value=0.012 Score=45.67 Aligned_cols=49 Identities=24% Similarity=0.448 Sum_probs=39.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC----------------CCCceecccC----CCCCChhhhhhhhhhcc
Q 019307 13 KKGPWTPEEDIILVSYIQEHGP----------------GNWRSVPTNT----GLLRCSKSCRLRWTNYL 61 (343)
Q Consensus 13 kKG~WT~EEDe~L~~lV~~~G~----------------~nW~~IA~~l----~~~Rt~kQCR~RW~n~L 61 (343)
++..||.+|.+.|+++|.+|.. .-|..|+..+ +..|+..+|+.+|.+..
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 4678999999999999998831 1499998655 22599999999999864
No 44
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=94.32 E-value=0.01 Score=53.95 Aligned_cols=50 Identities=24% Similarity=0.528 Sum_probs=40.2
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCC------CCceecccCCCCCChhhhhhhhhhccc
Q 019307 11 GVKKGPWTPEEDIILVSYIQEHGPG------NWRSVPTNTGLLRCSKSCRLRWTNYLR 62 (343)
Q Consensus 11 ~ikKG~WT~EEDe~L~~lV~~~G~~------nW~~IA~~l~~~Rt~kQCR~RW~n~L~ 62 (343)
..|+..||.|||.+|.+.|-+|+.. ....++..|. |+...|..||+.+++
T Consensus 2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr 57 (170)
T PRK13923 2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR 57 (170)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence 3578899999999999999988643 2556666665 999999999977765
No 45
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=93.65 E-value=0.14 Score=44.07 Aligned_cols=51 Identities=20% Similarity=0.417 Sum_probs=40.8
Q ss_pred CCccCCCChHHHHHHHHHHHHhCC----cHHHHHhh------------CCCCChHHHHHHHHHHhHH
Q 019307 64 GIKRGNFTDHEEKMIIHLQALLGN----RWAAIASY------------LPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~Gn----kWs~IA~~------------LpgRT~~qcKnRW~~~Lkk 114 (343)
..++..||++||.-|+-++.+||- .|..|-.. +..||+..|..|.+++++-
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 556779999999999999999995 79888643 3469999999999998875
No 46
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=93.49 E-value=0.18 Score=49.67 Aligned_cols=56 Identities=20% Similarity=0.324 Sum_probs=43.1
Q ss_pred cCCCChHHHHHHHHHHHHh----------CCcHHHHHhhC----CCCChHHHHHHHHHHhHHHHhhhcCCC
Q 019307 67 RGNFTDHEEKMIIHLQALL----------GNRWAAIASYL----PQRTDNDIKNYWNTHLKKKLKKLQTGS 123 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~----------GnkWs~IA~~L----pgRT~~qcKnRW~~~Lkkklkk~q~~~ 123 (343)
...|+.+|-..||++.... +..|..||+.+ .-||+.|||++|.++.++ +++.....
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~-Yk~~k~~~ 123 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKK-YKKEKAKK 123 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-HHHHhccc
Confidence 3689999999999987653 23499999955 369999999999996554 65555443
No 47
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=92.01 E-value=0.12 Score=52.64 Aligned_cols=82 Identities=21% Similarity=0.344 Sum_probs=60.9
Q ss_pred CCceecccCCCCCChhhhhhhhhhcccC-------------------------CCccCCCChHHHHHHHHHHHHhCCcHH
Q 019307 36 NWRSVPTNTGLLRCSKSCRLRWTNYLRP-------------------------GIKRGNFTDHEEKMIIHLQALLGNRWA 90 (343)
Q Consensus 36 nW~~IA~~l~~~Rt~kQCR~RW~n~L~P-------------------------~ikrg~WT~EED~~Ll~lv~~~GnkWs 90 (343)
.|.-++=..+ -|...--..||...-++ .++...||.+|-..|.+|++.|.-+|-
T Consensus 75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~ 153 (445)
T KOG2656|consen 75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF 153 (445)
T ss_pred CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence 5766654444 56666666666655221 122346999999999999999999999
Q ss_pred HHHhh-----CCC-CChHHHHHHHHHHhHHHHhh
Q 019307 91 AIASY-----LPQ-RTDNDIKNYWNTHLKKKLKK 118 (343)
Q Consensus 91 ~IA~~-----Lpg-RT~~qcKnRW~~~Lkkklkk 118 (343)
.|+.. ++. ||-.++|+||+...++-++.
T Consensus 154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kA 187 (445)
T KOG2656|consen 154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKA 187 (445)
T ss_pred EEeeccchhhccccccHHHHHHHHHHHHHHHHHc
Confidence 99875 555 99999999999988876654
No 48
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=92.00 E-value=0.44 Score=37.82 Aligned_cols=46 Identities=28% Similarity=0.498 Sum_probs=35.4
Q ss_pred CCChHHHHHHHHHHHHh---CC----------cHHHHHhhCC-----CCChHHHHHHHHHHhHH
Q 019307 69 NFTDHEEKMIIHLQALL---GN----------RWAAIASYLP-----QRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 69 ~WT~EED~~Ll~lv~~~---Gn----------kWs~IA~~Lp-----gRT~~qcKnRW~~~Lkk 114 (343)
.||+++++.|++++.+. |+ .|..|+..|. ..+..||++||..+.+.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 49999999999998653 21 2999988772 35789999999875543
No 49
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=87.76 E-value=0.81 Score=46.68 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=43.4
Q ss_pred CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 68 GNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 68 g~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.+|+.+|-++...+...+|..++.|+..+|.|...|||-+|.+--+.
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~ 412 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV 412 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence 48999999999999999999999999999999999999999875544
No 50
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=86.17 E-value=1.8 Score=45.10 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=42.9
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307 66 KRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK 113 (343)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (343)
-...||.||-.++-++...||.++.+|-+.||.|+-..|..+|...-+
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK 233 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKK 233 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHH
Confidence 345799999999999999999999999999999999999998876544
No 51
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=86.06 E-value=2.3 Score=30.40 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307 72 DHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK 113 (343)
Q Consensus 72 ~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (343)
++++..++.++...|-.|.+||..+ |.+...|+.+....++
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~ 52 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK 52 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence 4677888889889999999999999 9999999998776554
No 52
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=79.39 E-value=1.1 Score=44.36 Aligned_cols=47 Identities=26% Similarity=0.473 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHh---------CCCCCceeccc---CCCCCChhhhhhhhhhcc
Q 019307 15 GPWTPEEDIILVSYIQEH---------GPGNWRSVPTN---TGLLRCSKSCRLRWTNYL 61 (343)
Q Consensus 15 G~WT~EEDe~L~~lV~~~---------G~~nW~~IA~~---l~~~Rt~kQCR~RW~n~L 61 (343)
..|+.+|-..|+.+..+. ...-|..||.. .+..|++.||+.+|.+..
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~ 113 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK 113 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 789999999999987644 11259999973 345699999999998843
No 53
>smart00595 MADF subfamily of SANT domain.
Probab=78.20 E-value=4.9 Score=31.43 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=21.7
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 89 WAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 89 Ws~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
|..||..| +-+..+|+.+|+++-..
T Consensus 30 W~~Ia~~l-~~~~~~~~~kw~~LR~~ 54 (89)
T smart00595 30 WEEIAEEL-GLSVEECKKRWKNLRDR 54 (89)
T ss_pred HHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 99999999 55999999999986544
No 54
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=77.64 E-value=1.5 Score=44.85 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhc
Q 019307 15 GPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60 (343)
Q Consensus 15 G~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~ 60 (343)
-+|+.+|-+++.+++...|. ++..|+..+| +|..+|++.+|.+-
T Consensus 366 ~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP-~R~RkqIKaKfi~E 409 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGT-DFSLISSLFP-NRERKQIKAKFIKE 409 (507)
T ss_pred CcccHHHHHHHHHHHHHhcc-hHHHHHHhcC-chhHHHHHHHHHHH
Confidence 48999999999999999995 9999999999 99999999999763
No 55
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=76.92 E-value=1.6 Score=37.58 Aligned_cols=47 Identities=26% Similarity=0.406 Sum_probs=34.2
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCC---CCCceecccCC-----------CCCChhhhhhhh
Q 019307 11 GVKKGPWTPEEDIILVSYIQEHGP---GNWRSVPTNTG-----------LLRCSKSCRLRW 57 (343)
Q Consensus 11 ~ikKG~WT~EEDe~L~~lV~~~G~---~nW~~IA~~l~-----------~~Rt~kQCR~RW 57 (343)
.-++..||.|||.-|+-.+.+||. +.|..|-..+- ..|++..+..|-
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~ 106 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRC 106 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHH
Confidence 667899999999999999999998 88988865432 146666666664
No 56
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=71.94 E-value=6.8 Score=43.21 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=41.4
Q ss_pred cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHH
Q 019307 67 RGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 111 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~ 111 (343)
...||+.|-.+.-+++..|..++..|++.++++|-.||-.+|+..
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtW 663 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTW 663 (907)
T ss_pred cccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHH
Confidence 347999999999999999999999999999999999999988764
No 57
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=71.03 E-value=23 Score=35.66 Aligned_cols=48 Identities=23% Similarity=0.482 Sum_probs=37.8
Q ss_pred cCCCChHHHHHHHHHHHHh-CC---cHHHHHhhCCCCChHHHHHHHHHHhHHH
Q 019307 67 RGNFTDHEEKMIIHLQALL-GN---RWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~-Gn---kWs~IA~~LpgRT~~qcKnRW~~~Lkkk 115 (343)
-..|+.-|...|+++.+.. |. .-.+|++.++||+..+|++.-.. ||.+
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~-LK~r 72 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQ-LKGR 72 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHH-HHHH
Confidence 4579999999999988765 43 45789999999999999996654 4443
No 58
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=70.18 E-value=13 Score=26.13 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 73 HEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 73 EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
+++..++.+.-..|-.+.+||..| |-+...|+.+-...+++
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~k 47 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALKK 47 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHHH
Confidence 456666666666677899999999 88999999988776655
No 59
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=70.12 E-value=7.9 Score=41.86 Aligned_cols=57 Identities=16% Similarity=0.407 Sum_probs=43.9
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcHHHHHhhC----------CCCChHHHHHHHHHHhHHHHhhhcCCC
Q 019307 66 KRGNFTDHEEKMIIHLQALLGNRWAAIASYL----------PQRTDNDIKNYWNTHLKKKLKKLQTGS 123 (343)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~GnkWs~IA~~L----------pgRT~~qcKnRW~~~Lkkklkk~q~~~ 123 (343)
++..||-+|+.-...+++++|.++.+|-..+ .-+|..|+|.+|+..+.+ +.+.-+.+
T Consensus 87 ~ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~-m~k~~F~~ 153 (782)
T KOG4468|consen 87 AKTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRR-MNKLLFGP 153 (782)
T ss_pred cccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHH-HHhhhccc
Confidence 3678999999999999999999998883322 235778999999887776 44444554
No 60
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=68.38 E-value=4.9 Score=32.31 Aligned_cols=23 Identities=43% Similarity=0.814 Sum_probs=13.6
Q ss_pred CCccCCCCHHHHHHH--------HHHHHHhC
Q 019307 11 GVKKGPWTPEEDIIL--------VSYIQEHG 33 (343)
Q Consensus 11 ~ikKG~WT~EEDe~L--------~~lV~~~G 33 (343)
.-..|-||+|+|+.| .+++++||
T Consensus 44 ~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG 74 (87)
T PF11626_consen 44 DNMPGIWTPEDDEMLRSGDKDDIERLIKKHG 74 (87)
T ss_dssp TT-TT---HHHHHHHTS--HHHHHHHHHHH-
T ss_pred CCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC
Confidence 345789999999999 34667777
No 61
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=68.14 E-value=5.2 Score=31.63 Aligned_cols=44 Identities=30% Similarity=0.693 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHh---C----CC-----CCceecccC----CCCCChhhhhhhhhh
Q 019307 16 PWTPEEDIILVSYIQEH---G----PG-----NWRSVPTNT----GLLRCSKSCRLRWTN 59 (343)
Q Consensus 16 ~WT~EEDe~L~~lV~~~---G----~~-----nW~~IA~~l----~~~Rt~kQCR~RW~n 59 (343)
.||+++++.|++++.+. | .+ .|..|+..| +...+..||+.||..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~ 60 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT 60 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 59999999999988655 1 11 266666443 334566777777654
No 62
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=67.18 E-value=13 Score=32.46 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHHHHhh
Q 019307 72 DHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118 (343)
Q Consensus 72 ~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk 118 (343)
.+-|..|+++.++-| ..|++||+.+ |-+...|+.|++.+....+-+
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~GvI~ 54 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAGIIT 54 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 457888999888888 4799999999 999999999999988776543
No 63
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=66.94 E-value=16 Score=25.65 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCC-cHHHHHhhCCCCChHHHHHHHHHH
Q 019307 73 HEEKMIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTH 111 (343)
Q Consensus 73 EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~ 111 (343)
+-|..|+.+...-|. .|.+||..+ |=+...|..|+..+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHHh
Confidence 458889998888884 699999999 99999999998754
No 64
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=63.14 E-value=27 Score=31.15 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=24.6
Q ss_pred HHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 83 ALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 83 ~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
-..|-...+||..| |-+...|+.|+...+++
T Consensus 147 ~~~g~s~~EIA~~l-g~s~~tV~~rl~rar~~ 177 (192)
T PRK09643 147 DMQGYSVADAARML-GVAEGTVKSRCARGRAR 177 (192)
T ss_pred HHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34567899999999 99999999999654433
No 65
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=62.75 E-value=15 Score=34.48 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHhhC---CCCChHHHHHHHHHHhHH
Q 019307 69 NFTDHEEKMIIHLQALLGNRWAAIASYL---PQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 69 ~WT~EED~~Ll~lv~~~GnkWs~IA~~L---pgRT~~qcKnRW~~~Lkk 114 (343)
.|++++|..|+..|.. ++.-..|+.-+ -.-|-.+|..||+.+|-.
T Consensus 1 rW~~~DDl~Li~av~~-~~~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd 48 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQ-TNDLESVHLGVKFSCKFTLQEIEERWYALLYD 48 (199)
T ss_pred CCCchhhHHHHHHHHH-hcCHHHHHccCCcCCcCcHHHHHHHHHHHHcC
Confidence 4999999999999865 66677777654 356899999999998853
No 66
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=62.45 E-value=2.1 Score=28.93 Aligned_cols=16 Identities=38% Similarity=0.823 Sum_probs=13.5
Q ss_pred ccCchhhHHHHHhhhh
Q 019307 200 YASNAENISRLLQNWM 215 (343)
Q Consensus 200 yass~~ni~~~l~~w~ 215 (343)
=|.+.+|+++|-.|||
T Consensus 15 ~At~~~nLa~my~GW~ 30 (33)
T PF02260_consen 15 EATDPENLARMYIGWM 30 (33)
T ss_dssp HHHHHHHHHHHCTSS-
T ss_pred HHcCHHHHHHHhcchh
Confidence 3678999999999998
No 67
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=61.67 E-value=4.7 Score=44.34 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=40.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhh
Q 019307 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTN 59 (343)
Q Consensus 14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n 59 (343)
...||+.|-.++.+++-.|. .++..|++.+. +++.+||-+.|+.
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v~km~~-~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYS-KDFIFVQKMVK-SKTVAQCVEYYYT 662 (907)
T ss_pred cccccHHHHHHHHHHHHHhc-ccHHHHHHHhc-cccHHHHHHHHHH
Confidence 45899999999999999999 69999999998 9999999998765
No 68
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=60.26 E-value=12 Score=32.99 Aligned_cols=45 Identities=7% Similarity=-0.025 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHHHHh
Q 019307 72 DHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLK 117 (343)
Q Consensus 72 ~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkkklk 117 (343)
.+-|.+||.+.++-| -.|++||+.+ |-+...|+.|++.+.+..+-
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~GvI 58 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGFI 58 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 567888998888887 4799999999 99999999999998887754
No 69
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=60.16 E-value=23 Score=36.35 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=39.8
Q ss_pred CCCChHHHHHHHHHHHHhCCcHHHH-HhhCCCCChHHHHHHHHHHh
Q 019307 68 GNFTDHEEKMIIHLQALLGNRWAAI-ASYLPQRTDNDIKNYWNTHL 112 (343)
Q Consensus 68 g~WT~EED~~Ll~lv~~~GnkWs~I-A~~LpgRT~~qcKnRW~~~L 112 (343)
..|+++|-+..-+..+.||+++..| +..++.|+--.|-.+|+...
T Consensus 278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlWK 323 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLWK 323 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHhh
Confidence 3799999999999999999999999 55789999999998886543
No 70
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=60.11 E-value=7.9 Score=41.83 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=36.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCceec----------ccCCCCCChhhhhhhhhhccc
Q 019307 14 KGPWTPEEDIILVSYIQEHGPGNWRSVP----------TNTGLLRCSKSCRLRWTNYLR 62 (343)
Q Consensus 14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA----------~~l~~~Rt~kQCR~RW~n~L~ 62 (343)
|..||..|.+.+..+++++| .++.+|- .... .++-.|.|.+|++.+.
T Consensus 88 ktaWt~~E~~~Ffdal~~~G-KdFe~VinaklKRrna~s~~~-~Ktkdqvr~~yY~~~~ 144 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVG-KDFEKVINAKLKRRNATSRVQ-SKTKDQVRHYYYRLVR 144 (782)
T ss_pred ccccchhhHHHHHHHHHHhc-ccHHHHHHHHHHhcccccchh-hhhhHHHHHHHHHHHH
Confidence 56899999999999999999 5888872 2222 3567789998887654
No 71
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=59.15 E-value=30 Score=28.81 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 75 EKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 75 D~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
+..++.+.-..|-.+.+||..+ |.+...|+.+....+++
T Consensus 118 ~r~il~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~ 156 (161)
T TIGR02985 118 CRKIFILSRFEGKSYKEIAEEL-GISVKTVEYHISKALKE 156 (161)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3344444444577899999999 99999999999875544
No 72
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=58.08 E-value=5.2 Score=32.13 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=10.3
Q ss_pred CCCccCCCChHHHHHHH
Q 019307 63 PGIKRGNFTDHEEKMII 79 (343)
Q Consensus 63 P~ikrg~WT~EED~~Ll 79 (343)
|....|-||+++|..|.
T Consensus 43 P~n~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLR 59 (87)
T ss_dssp -TT-TT---HHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHH
Confidence 56678899999999994
No 73
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=56.72 E-value=4.8 Score=28.32 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhh
Q 019307 20 EEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTN 59 (343)
Q Consensus 20 EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n 59 (343)
+=|.+|+.+++..+...|.+||..+| =+...|+.|+..
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lg--lS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELG--LSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHT--S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHC--cCHHHHHHHHHH
Confidence 45889999999999889999999998 688899998764
No 74
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=54.30 E-value=15 Score=38.63 Aligned_cols=41 Identities=17% Similarity=0.352 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHH
Q 019307 69 NFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110 (343)
Q Consensus 69 ~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~ 110 (343)
.||++|-. +++...-|+.+...|+..+...|+.|++.+|..
T Consensus 472 ~wSp~e~s-~ircf~~y~~~fe~ia~l~~tktp~Q~~~fy~~ 512 (534)
T KOG1194|consen 472 GWSPEEKS-AIRCFHWYKDNFELIAELMATKTPEQIKKFYMD 512 (534)
T ss_pred CCCCcccc-cccCchhhccchHHHHHHhcCCCHHHHHHHhcC
Confidence 69999988 777778899999999999999999999999854
No 75
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=52.75 E-value=17 Score=32.78 Aligned_cols=40 Identities=23% Similarity=0.154 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHH
Q 019307 69 NFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWN 109 (343)
Q Consensus 69 ~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~ 109 (343)
.||+|+.+.|.+|..+ |..=++||..|.+.|.|.|.-+-+
T Consensus 2 ~Wtde~~~~L~~lw~~-G~SasqIA~~lg~vsRnAViGk~h 41 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE-GLSASQIARQLGGVSRNAVIGKAH 41 (162)
T ss_pred CCCHHHHHHHHHHHHc-CCCHHHHHHHhCCcchhhhhhhhh
Confidence 5999999999999854 778899999997799998876644
No 76
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=51.84 E-value=7.7 Score=33.89 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCc
Q 019307 19 PEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIK 66 (343)
Q Consensus 19 ~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ik 66 (343)
.+-|.+|+.+.++.|.-.|.+||+.++ -+...|+.|+.+....++-
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~lg--lS~~tV~~Ri~rL~~~GvI 53 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQFG--VSPGTIHVRVEKMKQAGII 53 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCe
Confidence 367999999999999889999999997 7899999999887665543
No 77
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=51.39 E-value=40 Score=26.61 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=26.3
Q ss_pred HHHHHHHhC--------CcHHHHHhhCCC---CC--hHHHHHHHHHHhHH
Q 019307 78 IIHLQALLG--------NRWAAIASYLPQ---RT--DNDIKNYWNTHLKK 114 (343)
Q Consensus 78 Ll~lv~~~G--------nkWs~IA~~Lpg---RT--~~qcKnRW~~~Lkk 114 (343)
|-.+|...| +.|..|+..|.- -+ ..++|..|..+|.+
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~~ 90 (92)
T PF01388_consen 41 LYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLLP 90 (92)
T ss_dssp HHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhHh
Confidence 566666666 359999999832 12 36899999888754
No 78
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=51.19 E-value=45 Score=26.85 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 77 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 77 ~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.++.++-..|..+.+||..+ |-+...|+++....+++
T Consensus 117 ~ii~~~~~~g~s~~eIA~~l-~~s~~~v~~~~~~~~~k 153 (158)
T TIGR02937 117 EVLVLRYLEGLSYKEIAEIL-GISVGTVKRRLKRARKK 153 (158)
T ss_pred HHHhhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 33344444578899999999 77999999988875544
No 79
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=50.18 E-value=65 Score=32.55 Aligned_cols=86 Identities=13% Similarity=0.168 Sum_probs=62.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCC---ceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHH-h----
Q 019307 14 KGPWTPEEDIILVSYIQEHGPGNW---RSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQAL-L---- 85 (343)
Q Consensus 14 KG~WT~EEDe~L~~lV~~~G~~nW---~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~-~---- 85 (343)
-..||.-|...|+.+.+......+ .+|++.++ +|+..++++- .+.|+ +..+.+++++ |
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~-~Rs~aEI~~f-l~~LK------------~rvareaiqkv~~~g~ 86 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELP-GRSEAEIRDF-LQQLK------------GRVAREAIQKVHPGGL 86 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhcc-CcCHHHHHHH-HHHHH------------HHHHHHHHHHhccccc
Confidence 458999999999999987753444 47788888 9999998874 34443 2344455544 2
Q ss_pred -CC------------cHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307 86 -GN------------RWAAIASYLPQRTDNDIKNYWNTHLK 113 (343)
Q Consensus 86 -Gn------------kWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (343)
|. -|..+|..+.|.-...+-.-|-+.|-
T Consensus 87 ~~~R~~e~q~paPIEvW~dla~k~tg~~ee~~t~afsq~l~ 127 (344)
T PF11035_consen 87 KGPRRREAQPPAPIEVWMDLAEKVTGPLEEALTAAFSQVLT 127 (344)
T ss_pred ccccccccCCCccHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 11 19999999999999888888877664
No 80
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=47.28 E-value=7.9 Score=34.27 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCc
Q 019307 19 PEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIK 66 (343)
Q Consensus 19 ~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ik 66 (343)
.+-|.+|+.+.++.|.-.|.+||+.++ -+...|+.|+.+..+-++-
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lg--lS~~tv~~Ri~rL~~~GvI 58 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVG--LSPTPCLERVRRLERQGFI 58 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCe
Confidence 567999999999999889999999997 7889999999887665543
No 81
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=47.13 E-value=29 Score=28.03 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCChHHH
Q 019307 75 EKMIIHLQALLGNRWAAIASYLPQRTDNDI 104 (343)
Q Consensus 75 D~~Ll~lv~~~GnkWs~IA~~LpgRT~~qc 104 (343)
|+.|..+....|..|..+|.+| |=|..+|
T Consensus 2 ~~~L~~la~~LG~~W~~Lar~L-gls~~~I 30 (83)
T cd08319 2 DRELNQLAQRLGPEWEQVLLDL-GLSQTDI 30 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 5678899999999999999999 5555444
No 82
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=46.54 E-value=51 Score=27.99 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=24.2
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|..+.+||..| |-+...|++++...+++
T Consensus 139 ~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~ 168 (179)
T PRK11924 139 VEGLSYREIAEIL-GVPVGTVKSRLRRARQL 168 (179)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4467899999999 89999999988765444
No 83
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=46.07 E-value=51 Score=26.33 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=27.3
Q ss_pred HHHHHHHhC--------CcHHHHHhhCCC-----CChHHHHHHHHHHhHH
Q 019307 78 IIHLQALLG--------NRWAAIASYLPQ-----RTDNDIKNYWNTHLKK 114 (343)
Q Consensus 78 Ll~lv~~~G--------nkWs~IA~~Lpg-----RT~~qcKnRW~~~Lkk 114 (343)
|..+|.+.| +.|..|+..|.- ....++|..|..+|.+
T Consensus 37 Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~ 86 (93)
T smart00501 37 LYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLP 86 (93)
T ss_pred HHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHH
Confidence 556666666 369999999832 2357889999888876
No 84
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=46.00 E-value=6.2 Score=31.33 Aligned_cols=40 Identities=23% Similarity=0.448 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCC-------CCCceecccCCCCCC----hhhhhhhhhhccc
Q 019307 23 IILVSYIQEHGP-------GNWRSVPTNTGLLRC----SKSCRLRWTNYLR 62 (343)
Q Consensus 23 e~L~~lV~~~G~-------~nW~~IA~~l~~~Rt----~kQCR~RW~n~L~ 62 (343)
-+|..+|.++|. +.|..|+..++.... ..+++..|.++|.
T Consensus 39 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~ 89 (92)
T PF01388_consen 39 YKLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLL 89 (92)
T ss_dssp HHHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhH
Confidence 357778888773 369999999985432 3567777877764
No 85
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=45.53 E-value=24 Score=26.59 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=21.5
Q ss_pred HHHHHhhCC-CCChHHHHHHHHHHhHH
Q 019307 89 WAAIASYLP-QRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 89 Ws~IA~~Lp-gRT~~qcKnRW~~~Lkk 114 (343)
|..|+..|. .-+..+|+.||+++...
T Consensus 29 w~~Ia~~l~~~~~~~~~~~~w~~Lr~~ 55 (85)
T PF10545_consen 29 WQEIARELGKEFSVDDCKKRWKNLRDR 55 (85)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 999999995 35788999999986654
No 86
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=45.44 E-value=59 Score=27.71 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=25.8
Q ss_pred HHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 80 HLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 80 ~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.+....|-.+.+||..| |.+...|+.+....+++
T Consensus 138 ~l~~~~~~s~~eIA~~l-gis~~tV~~~l~ra~~~ 171 (182)
T PRK09652 138 TLREIEGLSYEEIAEIM-GCPIGTVRSRIFRAREA 171 (182)
T ss_pred HHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 33344577899999999 88999999887765444
No 87
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=45.35 E-value=75 Score=20.96 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=27.9
Q ss_pred CChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHH
Q 019307 70 FTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 111 (343)
Q Consensus 70 WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~ 111 (343)
++++ +..++.+.-..|..+..||..+ |-+...|+.+....
T Consensus 11 l~~~-~~~~~~~~~~~~~~~~~ia~~~-~~s~~~i~~~~~~~ 50 (55)
T cd06171 11 LPER-EREVILLRFGEGLSYEEIAEIL-GISRSTVRQRLHRA 50 (55)
T ss_pred CCHH-HHHHHHHHHhcCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 4443 4555566556778899999999 77778887766543
No 88
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=44.43 E-value=41 Score=30.06 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=39.3
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCC----CCChHHHHHHHHHHh
Q 019307 66 KRGNFTDHEEKMIIHLQALLGNRWAAIASYLP----QRTDNDIKNYWNTHL 112 (343)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~GnkWs~IA~~Lp----gRT~~qcKnRW~~~L 112 (343)
....-++.|..-|..|+.+||.++...+.-.. ..|..||+.+...+.
T Consensus 113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 45578999999999999999999999987542 689999999877653
No 89
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=44.24 E-value=21 Score=36.91 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=42.4
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCceeccc-----CCCCCChhhhhhhhhhcc
Q 019307 11 GVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTN-----TGLLRCSKSCRLRWTNYL 61 (343)
Q Consensus 11 ~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~-----l~~~Rt~kQCR~RW~n~L 61 (343)
.+....||+||-+.|.++.++|- -.|-.|+.. .+..|+-...++||..+.
T Consensus 127 ~l~dn~WskeETD~LF~lck~fD-LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~ 181 (445)
T KOG2656|consen 127 HLNDNSWSKEETDYLFDLCKRFD-LRFFVIADRYDNQQYKKSRTVEDLKERYYSVC 181 (445)
T ss_pred hhccccccHHHHHHHHHHHHhcC-eeEEEEeeccchhhccccccHHHHHHHHHHHH
Confidence 44567899999999999999999 599999977 665699999999998643
No 90
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=43.50 E-value=68 Score=28.68 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307 74 EEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK 113 (343)
Q Consensus 74 ED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (343)
+...++.+....|-.+.+||..| |-+...|+.+|.....
T Consensus 139 ~~~~~v~l~~~~Gls~~EIA~~l-giS~~tV~r~l~~aR~ 177 (185)
T PF07638_consen 139 RQRRVVELRFFEGLSVEEIAERL-GISERTVRRRLRRARA 177 (185)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 33444445455677899999999 9999999999987653
No 91
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=43.31 E-value=20 Score=41.79 Aligned_cols=77 Identities=14% Similarity=0.224 Sum_probs=49.4
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHh-CCcHHH
Q 019307 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALL-GNRWAA 91 (343)
Q Consensus 13 kKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~-GnkWs~ 91 (343)
.-.-|..++|..|+-.|-+||.++|..|-.- +.-|... ...+.-.+..+.|=..+-..|+.+...+ +.+|..
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~D------p~L~l~d-Ki~~~e~~P~a~~L~~R~~yLls~~~~~~~~~~~~ 1204 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLD------PDLGLTD-KIFLVETVPQAKHLQRRADYLLSLLRKHDKGNTPK 1204 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccC------ccccchh-hhcccccCCchHHHHHHHHHHHHHHhhcccCCCch
Confidence 4568999999999999999999999988421 1111111 1122222455566677777777777776 455655
Q ss_pred HHhhC
Q 019307 92 IASYL 96 (343)
Q Consensus 92 IA~~L 96 (343)
..+..
T Consensus 1205 ~~~~~ 1209 (1373)
T KOG0384|consen 1205 KLKRE 1209 (1373)
T ss_pred hhhcc
Confidence 54443
No 92
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=43.16 E-value=49 Score=26.53 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHHHHhh
Q 019307 73 HEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118 (343)
Q Consensus 73 EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk 118 (343)
+.|..|+.+....| -.+.+||+.+ |-+...|+.+.+.+.+..+-+
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~g~i~ 48 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEEGVIK 48 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 56888888888877 4799999999 999999999999888776543
No 93
>PRK12512 RNA polymerase sigma factor; Provisional
Probab=42.38 E-value=84 Score=27.39 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=27.5
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhc
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 120 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q 120 (343)
..|....+||..| |-+...|+.+....+++-..++.
T Consensus 145 ~~g~s~~eIA~~l-~is~~tV~~~l~ra~~~Lr~~l~ 180 (184)
T PRK12512 145 VEGASIKETAAKL-SMSEGAVRVALHRGLAALAAKFR 180 (184)
T ss_pred HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHhh
Confidence 3466789999999 99999999998876666444443
No 94
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=41.93 E-value=89 Score=25.78 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=32.6
Q ss_pred CCCChHHHHHHHHHHHHh----C----CcHHHHHhh----CC-CCChHHHHHHHHHHhHH
Q 019307 68 GNFTDHEEKMIIHLQALL----G----NRWAAIASY----LP-QRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 68 g~WT~EED~~Ll~lv~~~----G----nkWs~IA~~----Lp-gRT~~qcKnRW~~~Lkk 114 (343)
.-||+++|..||+.+..| | ..|..+-.+ |. .=+.+|+.++-..+-++
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~K 64 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKK 64 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 469999999999998777 5 246554443 32 23778888887765444
No 95
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=39.91 E-value=12 Score=30.05 Aligned_cols=41 Identities=27% Similarity=0.554 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCC-------CCCceecccCCCCC----ChhhhhhhhhhcccC
Q 019307 23 IILVSYIQEHGP-------GNWRSVPTNTGLLR----CSKSCRLRWTNYLRP 63 (343)
Q Consensus 23 e~L~~lV~~~G~-------~nW~~IA~~l~~~R----t~kQCR~RW~n~L~P 63 (343)
-+|..+|.+.|. +.|..|+..+++.- ...+.+..|.++|.|
T Consensus 35 ~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~ 86 (93)
T smart00501 35 YRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLP 86 (93)
T ss_pred HHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHH
Confidence 357788888763 36999999998432 245566777777653
No 96
>PRK04217 hypothetical protein; Provisional
Probab=39.66 E-value=95 Score=26.43 Aligned_cols=47 Identities=13% Similarity=-0.040 Sum_probs=37.2
Q ss_pred CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHHH
Q 019307 68 GNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 116 (343)
Q Consensus 68 g~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkkl 116 (343)
..-+++| ..++.+....|-...+||+.+ |.+...|+.++....++-.
T Consensus 41 ~~Lt~ee-reai~l~~~eGlS~~EIAk~L-GIS~sTV~r~L~RArkkLr 87 (110)
T PRK04217 41 IFMTYEE-FEALRLVDYEGLTQEEAGKRM-GVSRGTVWRALTSARKKVA 87 (110)
T ss_pred ccCCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 3455555 677788777888999999999 9999999999987655533
No 97
>PRK09641 RNA polymerase sigma factor SigW; Provisional
Probab=38.95 E-value=84 Score=27.21 Aligned_cols=29 Identities=10% Similarity=-0.005 Sum_probs=23.7
Q ss_pred hCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 85 LGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.|..+.+||..| |-+...|+++....+++
T Consensus 151 ~~~s~~eIA~~l-gis~~~v~~~l~Rar~~ 179 (187)
T PRK09641 151 EDLSLKEISEIL-DLPVGTVKTRIHRGREA 179 (187)
T ss_pred hCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 466799999999 99999999988765544
No 98
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.
Probab=38.17 E-value=69 Score=27.82 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=23.8
Q ss_pred hCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 85 LGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.|-...+||..| |-+...|+++....+++
T Consensus 153 ~~~s~~EIA~~l-gis~~tv~~~l~rar~~ 181 (190)
T TIGR02939 153 EGLSYEDIARIM-DCPVGTVRSRIFRAREA 181 (190)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 356799999999 88899999998776555
No 99
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Probab=38.14 E-value=93 Score=26.72 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=24.6
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHHH
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkk 115 (343)
..|-...+||..| |-+...|++++...+++-
T Consensus 133 ~~g~s~~eiA~~l-gis~~tv~~~l~Ra~~~L 163 (169)
T TIGR02954 133 YHDLTIKEIAEVM-NKPEGTVKTYLHRALKKL 163 (169)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3456789999999 889999999988766553
No 100
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=37.33 E-value=31 Score=37.29 Aligned_cols=52 Identities=15% Similarity=0.340 Sum_probs=45.1
Q ss_pred CCccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHH
Q 019307 64 GIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (343)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkk 115 (343)
....++|+.+|-.+.-......|.+.+.|+..+|+|...|||.++..-=++.
T Consensus 406 ~~~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE~r~ 457 (584)
T KOG2009|consen 406 KLETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEEKRN 457 (584)
T ss_pred ccccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhhhcc
Confidence 3455789999999999999999999999999999999999999887544443
No 101
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=36.90 E-value=1.2e+02 Score=26.15 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=29.3
Q ss_pred HHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhh
Q 019307 79 IHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKL 119 (343)
Q Consensus 79 l~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~ 119 (343)
+.|....|-...+||..| |.+...|+.+-..-+++-...+
T Consensus 128 ~~L~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~~~~~l 167 (172)
T PRK12523 128 FLYNRLDGMGHAEIAERL-GVSVSRVRQYLAQGLRQCYIAL 167 (172)
T ss_pred HHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHh
Confidence 333444567899999999 9999999999877666544333
No 102
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=36.78 E-value=57 Score=26.30 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCChHHHHH
Q 019307 75 EKMIIHLQALLGNRWAAIASYLPQRTDNDIKN 106 (343)
Q Consensus 75 D~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKn 106 (343)
|..|..+....|..|..+|..| |=+..+|..
T Consensus 4 d~~l~~ia~~LG~dW~~LA~eL-g~s~~dI~~ 34 (84)
T cd08803 4 DIRMAIVADHLGLSWTELAREL-NFSVDEINQ 34 (84)
T ss_pred HHHHHHHHHHhhccHHHHHHHc-CCCHHHHHH
Confidence 6778889999999999999999 656555443
No 103
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=36.29 E-value=43 Score=26.42 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCChHHHH
Q 019307 75 EKMIIHLQALLGNRWAAIASYLPQRTDNDIK 105 (343)
Q Consensus 75 D~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcK 105 (343)
|..|..+....|..|.++|..| |=+..+|.
T Consensus 4 ~~~l~~ia~~lG~dW~~LAr~L-g~~~~dI~ 33 (84)
T cd08317 4 DIRLADISNLLGSDWPQLAREL-GVSETDID 33 (84)
T ss_pred cchHHHHHHHHhhHHHHHHHHc-CCCHHHHH
Confidence 5568888899999999999999 55555443
No 104
>PRK12515 RNA polymerase sigma factor; Provisional
Probab=35.84 E-value=99 Score=27.19 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=25.2
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHHH
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkk 115 (343)
..|-...+||..| |-+...|++++...+++-
T Consensus 145 ~~~~s~~eIA~~l-gis~~tV~~~l~Rar~~L 175 (189)
T PRK12515 145 YHEKSVEEVGEIV-GIPESTVKTRMFYARKKL 175 (189)
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3466799999999 889999999998765553
No 105
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=35.52 E-value=1.2e+02 Score=26.45 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=28.5
Q ss_pred HHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHHHhh
Q 019307 83 ALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118 (343)
Q Consensus 83 ~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk 118 (343)
...|-...+||..| |-+...|+.|....+..-+.+
T Consensus 140 ~~~g~s~~EIA~~l-gis~~tVk~~l~rAl~~~~~~ 174 (178)
T PRK12529 140 TLDGMKQKDIAQAL-DIALPTVKKYIHQAYVTCLSL 174 (178)
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHh
Confidence 34467899999999 999999999998877775554
No 106
>PRK12531 RNA polymerase sigma factor; Provisional
Probab=34.38 E-value=1.2e+02 Score=26.85 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=24.1
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|-...+||..| |-+...|+.|....+++
T Consensus 155 ~eg~s~~EIA~~l-gis~~tVk~rl~ra~~~ 184 (194)
T PRK12531 155 LEELPHQQVAEMF-DIPLGTVKSRLRLAVEK 184 (194)
T ss_pred HcCCCHHHHHHHh-CcCHHHHHHHHHHHHHH
Confidence 3466789999999 99999999998766554
No 107
>TIGR02948 SigW_bacill RNA polymerase sigma-W factor. This sigma factor is restricted to certain lineages of the order Bacillales.
Probab=33.97 E-value=1.1e+02 Score=26.53 Aligned_cols=29 Identities=10% Similarity=-0.005 Sum_probs=23.3
Q ss_pred hCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 85 LGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.|....+||..| |.+...|+++....+++
T Consensus 151 ~g~s~~eIA~~l-gis~~~v~~~l~Rar~~ 179 (187)
T TIGR02948 151 EDLSLKEISEIL-DLPVGTVKTRIHRGREA 179 (187)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 356789999999 88999999988765544
No 108
>PRK15328 invasion protein IagB; Provisional
Probab=33.94 E-value=90 Score=28.15 Aligned_cols=46 Identities=17% Similarity=0.454 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCcHHHHHhhCC--CCChHHHHHHHHHHhHHHHhhhcCC
Q 019307 77 MIIHLQALLGNRWAAIASYLP--QRTDNDIKNYWNTHLKKKLKKLQTG 122 (343)
Q Consensus 77 ~Ll~lv~~~GnkWs~IA~~Lp--gRT~~qcKnRW~~~Lkkklkk~q~~ 122 (343)
.|..++..||+.|..|+.+-- ++.....+.+|...+.+.+.++...
T Consensus 98 ~L~~~~~~~g~~~~alaaYNaG~~~~~~~~~~~Y~~kV~~~y~~l~~~ 145 (160)
T PRK15328 98 ILSDMMKIYGYSWEAVGAYNAGTSPKRSDIRKRYAKKIWENYRKLKGM 145 (160)
T ss_pred HHHHHHHHcCChHHhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 566788999999999998864 4555567888888888888777533
No 109
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=33.30 E-value=1.3e+02 Score=25.25 Aligned_cols=30 Identities=10% Similarity=0.021 Sum_probs=24.4
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|-.-.+||..| |-+...|+.|....+++
T Consensus 120 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 149 (161)
T PRK09047 120 WEDMDVAETAAAM-GCSEGSVKTHCSRATHA 149 (161)
T ss_pred HhcCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3466789999999 89999999998766554
No 110
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=33.24 E-value=88 Score=32.41 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=45.8
Q ss_pred CccCCCChHHHHHHHHHHHHhC----------------CcHHHHHhhC-----CCCChHHHHHHHHHHhHHHHhhhcCC
Q 019307 65 IKRGNFTDHEEKMIIHLQALLG----------------NRWAAIASYL-----PQRTDNDIKNYWNTHLKKKLKKLQTG 122 (343)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G----------------nkWs~IA~~L-----pgRT~~qcKnRW~~~Lkkklkk~q~~ 122 (343)
.-.|.|+++-|+-..++...|. ++=..||+++ ..||.+||-.|-..+-|+++++.|..
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~reiq~k 152 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREIQAK 152 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4568999999999999998873 2357889886 35889999999888888877766644
No 111
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=33.10 E-value=1.4e+02 Score=25.38 Aligned_cols=30 Identities=13% Similarity=-0.042 Sum_probs=24.1
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|-.-.+||..| |-+...|++|....+++
T Consensus 120 ~~g~s~~EIA~~l-gis~~tV~~~l~Rar~~ 149 (160)
T PRK09642 120 LEEKSYQEIALQE-KIEVKTVEMKLYRARKW 149 (160)
T ss_pred HhCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3466789999999 99999999988765554
No 112
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=32.73 E-value=1.4e+02 Score=25.55 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=24.5
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|-.-.+||..| |.+...|+.|....++.
T Consensus 132 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 161 (173)
T PRK09645 132 YRGWSTAQIAADL-GIPEGTVKSRLHYALRA 161 (173)
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3466789999999 99999999998876654
No 113
>PRK12527 RNA polymerase sigma factor; Reviewed
Probab=32.59 E-value=1.6e+02 Score=25.02 Aligned_cols=31 Identities=16% Similarity=0.031 Sum_probs=24.4
Q ss_pred hCCcHHHHHhhCCCCChHHHHHHHHHHhHHHH
Q 019307 85 LGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 116 (343)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkkl 116 (343)
.|-.-.+||..| |-+...|+.|....++.-.
T Consensus 120 ~~~s~~eIA~~l-gis~~tv~~~l~ra~~~Lr 150 (159)
T PRK12527 120 EGLSHQQIAEHL-GISRSLVEKHIVNAMKHCR 150 (159)
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 455679999999 9999999999886665533
No 114
>PRK09648 RNA polymerase sigma factor SigD; Reviewed
Probab=32.32 E-value=1.4e+02 Score=26.25 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=24.3
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|....+||..| |-+...|+.+....+++
T Consensus 153 ~~g~s~~EIA~~l-gis~~tV~~~l~Ra~~~ 182 (189)
T PRK09648 153 VVGLSAEETAEAV-GSTPGAVRVAQHRALAR 182 (189)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467799999999 88899999988766554
No 115
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=32.03 E-value=66 Score=25.73 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=20.5
Q ss_pred HHHHHHHhCCcHHHHHhhCCCCChHHH
Q 019307 78 IIHLQALLGNRWAAIASYLPQRTDNDI 104 (343)
Q Consensus 78 Ll~lv~~~GnkWs~IA~~LpgRT~~qc 104 (343)
|..+....|..|..+|..| |-+..+|
T Consensus 10 l~~ia~~iG~~Wk~Lar~L-Gls~~dI 35 (86)
T cd08318 10 ITVFANKLGEDWKTLAPHL-EMKDKEI 35 (86)
T ss_pred HHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 4446688899999999999 7666666
No 116
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=30.49 E-value=1.3e+02 Score=26.35 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=22.8
Q ss_pred hCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 85 LGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.|-...+||..| |-+...|+.|....+++
T Consensus 153 ~g~s~~eIA~~l-gis~~tv~~~l~Rar~~ 181 (193)
T PRK11923 153 DGLSYEDIASVM-QCPVGTVRSRIFRAREA 181 (193)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 356789999999 88899999988765443
No 117
>PRK09637 RNA polymerase sigma factor SigZ; Provisional
Probab=30.40 E-value=1.4e+02 Score=26.46 Aligned_cols=30 Identities=23% Similarity=0.031 Sum_probs=24.6
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|-...+||..| |-+...|+.+....+++
T Consensus 120 ~~g~~~~EIA~~l-gis~~tV~~~l~Rar~~ 149 (181)
T PRK09637 120 LEGLSQKEIAEKL-GLSLSGAKSRVQRGRVK 149 (181)
T ss_pred hcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4567899999999 89999999998766554
No 118
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=30.08 E-value=64 Score=27.12 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=33.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcc
Q 019307 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 (343)
Q Consensus 13 kKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L 61 (343)
++..||.|+-..++..+...| ..=..||..+++ ..+-..+|.+.+
T Consensus 9 ~rr~ys~EfK~~aV~~~~~~g-~sv~evA~e~gI---s~~tl~~W~r~y 53 (121)
T PRK09413 9 KRRRRTTQEKIAIVQQSFEPG-MTVSLVARQHGV---AASQLFLWRKQY 53 (121)
T ss_pred CCCCCCHHHHHHHHHHHHcCC-CCHHHHHHHHCc---CHHHHHHHHHHH
Confidence 457899999888888877777 366789998884 444556677654
No 119
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=29.76 E-value=1e+02 Score=21.12 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHH
Q 019307 73 HEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNY 107 (343)
Q Consensus 73 EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnR 107 (343)
-|...|.++...++++..+.|+.| |=+...+..+
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~L-gisr~tL~~k 38 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLL-GISRRTLYRK 38 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHH-TS-HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CCCHHHHHHH
Confidence 377788899999999999999999 6555555444
No 120
>TIGR02943 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02943 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=29.10 E-value=1.3e+02 Score=26.66 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=26.1
Q ss_pred HHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 80 HLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 80 ~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.+....|....+||..| |-+.+.|+.|....+++
T Consensus 141 ~l~~~~g~s~~EIA~~l-gis~~tvk~rl~Rar~~ 174 (188)
T TIGR02943 141 MMREVLGFESDEICQEL-EISTSNCHVLLYRARLS 174 (188)
T ss_pred HHHHHhCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 33334567799999999 99999999988766544
No 121
>PRK09646 RNA polymerase sigma factor SigK; Reviewed
Probab=28.87 E-value=1.9e+02 Score=25.67 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=23.3
Q ss_pred hCCcHHHHHhhCCCCChHHHHHHHHHHhHHH
Q 019307 85 LGNRWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (343)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkk 115 (343)
.|-...+||..| |-+...||.+-...+++-
T Consensus 157 ~~~s~~EIA~~L-gis~~tVk~~l~ra~~~L 186 (194)
T PRK09646 157 GGLTYREVAERL-AVPLGTVKTRMRDGLIRL 186 (194)
T ss_pred cCCCHHHHHHHh-CCChHhHHHHHHHHHHHH
Confidence 356789999999 779999998877655543
No 122
>PRK12514 RNA polymerase sigma factor; Provisional
Probab=28.63 E-value=1.8e+02 Score=25.16 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=23.7
Q ss_pred hCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 85 LGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.|-.-.+||..| |.+...|+.+....+++
T Consensus 144 ~g~s~~eIA~~l-gis~~tV~~~l~Rar~~ 172 (179)
T PRK12514 144 EGLSYKELAERH-DVPLNTMRTWLRRSLLK 172 (179)
T ss_pred cCCCHHHHHHHH-CCChHHHHHHHHHHHHH
Confidence 356789999999 99999999988765554
No 123
>PF11427 HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C.
Probab=28.56 E-value=1.3e+02 Score=22.17 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHH
Q 019307 73 HEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYW 108 (343)
Q Consensus 73 EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW 108 (343)
+.|+-.+.++.+.|-.-.+||+.+ +|+.+.|+++-
T Consensus 7 ~~Eqaqid~m~qlG~s~~~isr~i-~RSr~~Ir~yl 41 (50)
T PF11427_consen 7 DAEQAQIDVMHQLGMSLREISRRI-GRSRTCIRRYL 41 (50)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHH-T--HHHHHHHH
T ss_pred HHHHHHHHHHHHhchhHHHHHHHh-CccHHHHHHHh
Confidence 456667778888999999999999 99999888763
No 124
>PRK05602 RNA polymerase sigma factor; Reviewed
Probab=28.45 E-value=1.7e+02 Score=25.49 Aligned_cols=30 Identities=7% Similarity=0.038 Sum_probs=23.5
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|-...+||..| |-+.+.|+.+....+++
T Consensus 142 ~~g~s~~EIA~~l-gis~~tV~~~l~Rar~~ 171 (186)
T PRK05602 142 YQGLSNIEAAAVM-DISVDALESLLARGRRA 171 (186)
T ss_pred hcCCCHHHHHHHh-CcCHHHHHHHHHHHHHH
Confidence 3466789999999 88999999887765544
No 125
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=27.98 E-value=78 Score=24.40 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=21.6
Q ss_pred HHHHHHHHHHH-hCCcHHHHHhhCCCCChHHH
Q 019307 74 EEKMIIHLQAL-LGNRWAAIASYLPQRTDNDI 104 (343)
Q Consensus 74 ED~~Ll~lv~~-~GnkWs~IA~~LpgRT~~qc 104 (343)
-++.|..++.. .|..|..+|+.| |=+..+|
T Consensus 4 ~~~~~~~l~~~~~g~~W~~la~~L-g~~~~~i 34 (88)
T smart00005 4 TREKLAKLLDHPLGLDWRELARKL-GLSEADI 34 (88)
T ss_pred HHHHHHHHHcCccchHHHHHHHHc-CCCHHHH
Confidence 34556667767 899999999999 4445444
No 126
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=27.85 E-value=83 Score=25.15 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCChHHHHH
Q 019307 75 EKMIIHLQALLGNRWAAIASYLPQRTDNDIKN 106 (343)
Q Consensus 75 D~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKn 106 (343)
|..|-.+....|.+|..+|+.| |=+..+|.+
T Consensus 4 ~~~l~~ia~~LG~dWk~LAr~L-g~se~dI~~ 34 (84)
T cd08804 4 EERLAVIADHLGFSWTELAREL-DFTEEQIHQ 34 (84)
T ss_pred hhHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 5567788899999999999999 666666654
No 127
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=27.12 E-value=46 Score=26.70 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCcHHHHHhhC
Q 019307 76 KMIIHLQALLGNRWAAIASYL 96 (343)
Q Consensus 76 ~~Ll~lv~~~GnkWs~IA~~L 96 (343)
..|..+....|..|..++.+|
T Consensus 3 ~~l~~ia~~LG~~Wk~lar~L 23 (86)
T cd08779 3 SNLLSIAGRLGLDWQAIGLHL 23 (86)
T ss_pred hHHHHHHHHHhHHHHHHHHHc
Confidence 458889999999999999998
No 128
>PRK12530 RNA polymerase sigma factor; Provisional
Probab=26.90 E-value=1.8e+02 Score=25.69 Aligned_cols=29 Identities=7% Similarity=-0.050 Sum_probs=23.7
Q ss_pred hCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 85 LGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.|-...+||..| |.+...|+.|....+++
T Consensus 149 ~g~s~~EIA~~l-gis~~tVk~~l~RAr~~ 177 (189)
T PRK12530 149 LELSSEQICQEC-DISTSNLHVLLYRARLQ 177 (189)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 466799999999 99999999987765443
No 129
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=26.89 E-value=39 Score=27.11 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCC
Q 019307 20 EEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGI 65 (343)
Q Consensus 20 EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~i 65 (343)
+.|.+++.++++.+.-.+..|++.++ -+...|+.|..+..+.++
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l~--~s~~tv~~~l~~L~~~g~ 46 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKVG--LSPSTVHNRVKRLEEEGV 46 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 57899999999998889999999987 788899998877655443
No 130
>PRK12536 RNA polymerase sigma factor; Provisional
Probab=26.83 E-value=2.1e+02 Score=24.98 Aligned_cols=31 Identities=23% Similarity=0.120 Sum_probs=25.1
Q ss_pred HHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 83 ALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 83 ~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
...|-...+||..| |.+...|+++-...+++
T Consensus 142 ~~~g~s~~EIA~~l-~is~~tV~~~l~rar~~ 172 (181)
T PRK12536 142 KLEGLSVAETAQLT-GLSESAVKVGIHRGLKA 172 (181)
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34467799999999 99999999998775554
No 131
>PRK13919 putative RNA polymerase sigma E protein; Provisional
Probab=26.55 E-value=2e+02 Score=24.99 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=23.4
Q ss_pred hCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 85 LGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.|-.-.+||..| |-+...|+.+.+..+++
T Consensus 150 ~~~s~~eIA~~l-gis~~~V~~~l~ra~~~ 178 (186)
T PRK13919 150 QGYTHREAAQLL-GLPLGTLKTRARRALSR 178 (186)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 355679999999 89999999988776555
No 132
>PRK12516 RNA polymerase sigma factor; Provisional
Probab=26.21 E-value=2e+02 Score=25.56 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=26.3
Q ss_pred HHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 79 IHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 79 l~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
+.|....|-...+||..| |-+...|+.|-...++.
T Consensus 125 ~~L~~~~g~s~~EIA~~L-gis~~tVk~~l~Rar~~ 159 (187)
T PRK12516 125 IILVGASGFAYEEAAEIC-GCAVGTIKSRVNRARQR 159 (187)
T ss_pred HHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 333344567899999999 88999999987765544
No 133
>COG2963 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=26.04 E-value=2.1e+02 Score=23.43 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=34.7
Q ss_pred cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCC-ChHHHHHHHHH
Q 019307 67 RGNFTDHEEKMIIHLQALLGNRWAAIASYLPQR-TDNDIKNYWNT 110 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgR-T~~qcKnRW~~ 110 (343)
+..||+|.-..+++++..-|..=+.||+.+ |- ..++++..++.
T Consensus 5 ~r~~s~EfK~~iv~~~~~~g~sv~~vAr~~-gv~~~~~l~~W~~~ 48 (116)
T COG2963 5 RKKYSPEFKLEAVALYLRGGDTVSEVAREF-GIVSATQLYKWRIQ 48 (116)
T ss_pred cccCCHHHHHHHHHHHHhcCccHHHHHHHh-CCCChHHHHHHHHH
Confidence 568999999999999999998889999999 75 66655554433
No 134
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=25.39 E-value=83 Score=33.50 Aligned_cols=41 Identities=17% Similarity=0.403 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHH-hhCCCCChHHHHHHHH
Q 019307 69 NFTDHEEKMIIHLQALLGNRWAAIA-SYLPQRTDNDIKNYWN 109 (343)
Q Consensus 69 ~WT~EED~~Ll~lv~~~GnkWs~IA-~~LpgRT~~qcKnRW~ 109 (343)
.|+..|-.+.-++..+||..+..|- .+||-++-..|-.+|.
T Consensus 287 EWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyYY 328 (693)
T KOG3554|consen 287 EWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYYY 328 (693)
T ss_pred hccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHHH
Confidence 6999999999999999999999995 5779999998888765
No 135
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=25.24 E-value=89 Score=25.18 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCcHHHHHhhCCCCChHHHHH
Q 019307 76 KMIIHLQALLGNRWAAIASYLPQRTDNDIKN 106 (343)
Q Consensus 76 ~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKn 106 (343)
+.|-.+....|.+|..+|+.| |=+..+|..
T Consensus 3 ~~l~~l~~~lG~~Wk~lar~L-G~s~~eI~~ 32 (86)
T cd08777 3 KHLDLLRENLGKKWKRCARKL-GFTESEIEE 32 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 345566678899999999999 777777665
No 136
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=24.92 E-value=71 Score=34.63 Aligned_cols=48 Identities=15% Similarity=0.333 Sum_probs=42.6
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhh
Q 019307 10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTN 59 (343)
Q Consensus 10 ~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n 59 (343)
+....++|+.+|-++........|. +...|+..++ +|..+|++.+|..
T Consensus 405 k~~~~~~w~~se~e~fyka~~~~gs-~~slis~l~p-~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 405 KKLETDKWDASETELFYKALSERGS-DFSLISNLFP-LRDRKQIKAKFKK 452 (584)
T ss_pred CccccCcccchhhHHhhhHHhhhcc-cccccccccc-cccHHHHHHHHhh
Confidence 3455789999999999999999995 9999999998 9999999998754
No 137
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=24.28 E-value=2.7e+02 Score=23.88 Aligned_cols=30 Identities=13% Similarity=0.048 Sum_probs=23.9
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|-...+||..| |-+...|+.+-...+++
T Consensus 126 ~~g~s~~eIA~~l-gis~~tV~~~l~Rar~~ 155 (164)
T PRK12547 126 ASGFSYEDAAAIC-GCAVGTIKSRVSRARNR 155 (164)
T ss_pred HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3466789999999 88899999987765554
No 138
>PRK12526 RNA polymerase sigma factor; Provisional
Probab=24.19 E-value=2.4e+02 Score=25.34 Aligned_cols=29 Identities=17% Similarity=0.044 Sum_probs=23.3
Q ss_pred CCcHHHHHhhCCCCChHHHHHHHHHHhHHH
Q 019307 86 GNRWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (343)
Q Consensus 86 GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkk 115 (343)
|-.-.+||..| |.+.+.|+.+....+++-
T Consensus 169 g~s~~EIA~~l-gis~~tV~~~l~Ra~~~L 197 (206)
T PRK12526 169 ELSQEQLAQQL-NVPLGTVKSRLRLALAKL 197 (206)
T ss_pred CCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 55679999999 999999999887665553
No 139
>PRK12524 RNA polymerase sigma factor; Provisional
Probab=24.13 E-value=1.8e+02 Score=25.75 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=23.3
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|-.+.+||..| |-+...|+.+-...+++
T Consensus 150 ~~g~s~~eIA~~l-gis~~tV~~~l~Ra~~~ 179 (196)
T PRK12524 150 IEGLSNPEIAEVM-EIGVEAVESLTARGKRA 179 (196)
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3466799999999 88888888887765444
No 140
>TIGR02983 SigE-fam_strep RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Probab=23.91 E-value=2.4e+02 Score=23.83 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 74 EEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 74 ED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
++..++.+.-..|-.-.+||..| |-+...|+.+....+++
T Consensus 114 ~~r~i~~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 153 (162)
T TIGR02983 114 RQRAVVVLRYYEDLSEAQVAEAL-GISVGTVKSRLSRALAR 153 (162)
T ss_pred HHHHHhhhHHHhcCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 33344444444566789999999 89999999998876655
No 141
>TIGR02952 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02952 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in a limited number of Gram-positive bacterial lineages.
Probab=23.89 E-value=2.3e+02 Score=23.91 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=22.4
Q ss_pred hCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 85 LGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.|-...+||..| |.+...|+.+-...+++
T Consensus 137 ~g~s~~eIA~~l-~is~~tv~~~l~ra~~~ 165 (170)
T TIGR02952 137 QNLPIAEVARIL-GKTEGAVKILQFRAIKK 165 (170)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 366789999999 88899999887654443
No 142
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=23.74 E-value=1.6e+02 Score=24.95 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHHHH
Q 019307 72 DHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKL 116 (343)
Q Consensus 72 ~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkkkl 116 (343)
.+-|.+|+++.+.-+ ..+.+||+.+ |-+...|++|-+.+.+..+
T Consensus 7 D~~D~~IL~~L~~d~r~~~~eia~~l-glS~~~v~~Ri~~L~~~Gi 51 (154)
T COG1522 7 DDIDRRILRLLQEDARISNAELAERV-GLSPSTVLRRIKRLEEEGV 51 (154)
T ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCc
Confidence 356788888888777 4699999999 8999999999888777654
No 143
>PRK12528 RNA polymerase sigma factor; Provisional
Probab=23.67 E-value=2.1e+02 Score=24.26 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=23.3
Q ss_pred HHhCCcHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307 83 ALLGNRWAAIASYLPQRTDNDIKNYWNTHLK 113 (343)
Q Consensus 83 ~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (343)
-..|-...+||..| |-+...|+.|....++
T Consensus 126 ~~~g~s~~EIA~~l-~is~~tV~~~l~ra~~ 155 (161)
T PRK12528 126 QVDGLGYGEIATEL-GISLATVKRYLNKAAM 155 (161)
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 33466789999999 8899999998766543
No 144
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=23.49 E-value=40 Score=28.61 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCc
Q 019307 19 PEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIK 66 (343)
Q Consensus 19 ~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ik 66 (343)
.+-|.+++++.++.+...+..||+.++ -+...|+.|-.+..+-++-
T Consensus 7 D~~D~~IL~~L~~d~r~~~~eia~~lg--lS~~~v~~Ri~~L~~~GiI 52 (154)
T COG1522 7 DDIDRRILRLLQEDARISNAELAERVG--LSPSTVLRRIKRLEEEGVI 52 (154)
T ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCce
Confidence 356899999999999889999999997 7889999998776655543
No 145
>TIGR02999 Sig-70_X6 RNA polymerase sigma factor, TIGR02999 family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found in a variety of species including Rhodopirellula baltica which encodes a paralogous group of five.
Probab=23.40 E-value=2.5e+02 Score=24.22 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=23.4
Q ss_pred hCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 85 LGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.|-...+||..| |-+...|+.|....++.
T Consensus 149 ~g~s~~EIA~~l-gis~~tVk~~l~Rar~~ 177 (183)
T TIGR02999 149 AGLTVEEIAELL-GVSVRTVERDWRFARAW 177 (183)
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 356789999999 99999999998765544
No 146
>PF01710 HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Transposase proteins are necessary for efficient DNA transposition. This entry includes insertion sequences from Synechocystis sp. (strain PCC 6803) three of which are characterised as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=23.31 E-value=1.1e+02 Score=25.72 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHH
Q 019307 21 EDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMI 78 (343)
Q Consensus 21 EDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~L 78 (343)
+.+.|..+|..+....=.+||..++ ...+...++...|.-..++..|..++|..-
T Consensus 58 d~~~L~~~v~~~pd~tl~Ela~~l~---Vs~~ti~~~Lkrlg~t~KK~~~~~~~~~~~ 112 (119)
T PF01710_consen 58 DRDELKALVEENPDATLRELAERLG---VSPSTIWRALKRLGITRKKKTLHSEKDREK 112 (119)
T ss_pred cHHHHHHHHHHCCCcCHHHHHHHcC---CCHHHHHHHHHHcCchhccCcccchhHHHH
Confidence 5667999999999777779999887 466666677777777778888877666554
No 147
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=23.28 E-value=1.8e+02 Score=25.60 Aligned_cols=29 Identities=17% Similarity=0.093 Sum_probs=23.7
Q ss_pred hCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 85 LGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.|-...+||..| |-+...|+.|....++.
T Consensus 145 ~g~s~~EIA~~l-gis~~tVk~~l~Rar~~ 173 (185)
T PRK09649 145 LGLSYADAAAVC-GCPVGTIRSRVARARDA 173 (185)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 456689999999 99999999998765554
No 148
>PRK06759 RNA polymerase factor sigma-70; Validated
Probab=23.21 E-value=2.2e+02 Score=23.81 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=21.9
Q ss_pred hCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 85 LGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.|....+||..| |.+...|+.+-...+++
T Consensus 121 ~~~s~~EIA~~l-~is~~tV~~~~~ra~~~ 149 (154)
T PRK06759 121 VGKTMGEIALET-EMTYYQVRWIYRQALEK 149 (154)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 355688999999 88999998886654443
No 149
>TIGR02950 SigM_subfam RNA polymerase sigma factor, SigM family. This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot: SIGM_BACSU) and is activated by various stressors.
Probab=22.88 E-value=74 Score=26.63 Aligned_cols=28 Identities=18% Similarity=0.117 Sum_probs=23.2
Q ss_pred CCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 86 GNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 86 GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
|-.+.+||..| |-+...|++++...+++
T Consensus 121 g~s~~eIA~~l-gis~~tv~~~l~Ra~~~ 148 (154)
T TIGR02950 121 EFSYKEIAELL-NLSLAKVKSNLFRARKE 148 (154)
T ss_pred cCcHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 45699999999 99999999998876544
No 150
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=22.65 E-value=98 Score=27.60 Aligned_cols=48 Identities=15% Similarity=0.269 Sum_probs=36.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCceecccCC---CCCChhhhhhhhhhc
Q 019307 12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG---LLRCSKSCRLRWTNY 60 (343)
Q Consensus 12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~---~~Rt~kQCR~RW~n~ 60 (343)
.+..+-+..|.+-|..+|.+|| .++..++.-.- ...|..||+.+...|
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhG-dDy~aMarD~KLN~~Q~T~~qlrrki~~~ 162 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHG-DDYKAMARDRKLNYMQHTPGQLRRKIRKY 162 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHC-ccHHHHhccCCCCcccCCHHHHHHHHHHh
Confidence 4567789999999999999999 58877774322 137888888876655
No 151
>PRK09651 RNA polymerase sigma factor FecI; Provisional
Probab=22.53 E-value=1.7e+02 Score=25.36 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=23.9
Q ss_pred hCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 85 LGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.|-...+||..| |-+...|+.|....++.
T Consensus 134 ~g~s~~EIA~~l-gis~~tV~~~l~Ra~~~ 162 (172)
T PRK09651 134 DGLTYSEIAHKL-GVSVSSVKKYVAKATEH 162 (172)
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 356789999999 99999999998776554
No 152
>PRK12532 RNA polymerase sigma factor; Provisional
Probab=22.38 E-value=2.3e+02 Score=25.04 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=23.7
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|-.-.+||..| |-+...|+.|....++.
T Consensus 150 ~~g~s~~EIA~~l-gis~~tVk~~l~Rar~~ 179 (195)
T PRK12532 150 ILGFSSDEIQQMC-GISTSNYHTIMHRARES 179 (195)
T ss_pred HhCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3466789999999 99999999988764443
No 153
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=22.28 E-value=1.6e+02 Score=34.19 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=38.7
Q ss_pred CCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307 68 GNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLK 113 (343)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (343)
..|+.-+=..++.+..+|| .+-..||..|.++|..+|+.+.+....
T Consensus 825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~ 871 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWE 871 (1033)
T ss_pred CcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3688888888888999999 569999999999999999987665443
No 154
>TIGR02984 Sig-70_plancto1 RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are apparently found only in the Planctomycetaceae family including the genuses Gemmata and Pirellula (in which seven sequences are found).
Probab=22.10 E-value=2.6e+02 Score=24.04 Aligned_cols=30 Identities=23% Similarity=0.500 Sum_probs=23.9
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|-...+||..| |-+...|+.+....+++
T Consensus 154 ~~g~s~~eIA~~l-gis~~~v~~~l~Ra~~~ 183 (189)
T TIGR02984 154 LEGLSFAEVAERM-DRSEGAVSMLWVRGLAR 183 (189)
T ss_pred hcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3466789999999 89999999988766554
No 155
>PRK09638 RNA polymerase sigma factor SigY; Reviewed
Probab=21.70 E-value=1.2e+02 Score=25.99 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=23.2
Q ss_pred hCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 85 LGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
+|-...+||..| |-+...|+.+....+++
T Consensus 141 ~g~s~~eIA~~l-~is~~~V~~~l~ra~~~ 169 (176)
T PRK09638 141 YGYTYEEIAKML-NIPEGTVKSRVHHGIKQ 169 (176)
T ss_pred cCCCHHHHHHHH-CCChhHHHHHHHHHHHH
Confidence 466789999999 77999998887765554
No 156
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=21.16 E-value=2.2e+02 Score=27.23 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=23.9
Q ss_pred hCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 85 LGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.|-.-.+||..| |.+...||.|....+++
T Consensus 157 ~g~s~~EIA~~l-gis~~tV~~~l~Rar~~ 185 (324)
T TIGR02960 157 LGWRAAETAELL-GTSTASVNSALQRARAT 185 (324)
T ss_pred hCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 456789999999 99999999998765544
No 157
>PRK01905 DNA-binding protein Fis; Provisional
Probab=20.73 E-value=2.5e+02 Score=21.85 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHH
Q 019307 71 TDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNY 107 (343)
Q Consensus 71 T~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnR 107 (343)
..-|...|++++..+|+++.+.|+.+ |=+...++.+
T Consensus 35 ~~~E~~~i~~aL~~~~gn~s~aAr~L-GIsrstL~rk 70 (77)
T PRK01905 35 SCVEKPLLEVVMEQAGGNQSLAAEYL-GINRNTLRKK 70 (77)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHH
Confidence 34577788999999999999999998 5555444443
No 158
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=20.68 E-value=1.5e+02 Score=23.96 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCcHHHHHhhC
Q 019307 75 EKMIIHLQALLGNRWAAIASYL 96 (343)
Q Consensus 75 D~~Ll~lv~~~GnkWs~IA~~L 96 (343)
|..|..+....|..|..+|..|
T Consensus 4 ~~~l~~Ia~~LG~dW~~Lar~L 25 (84)
T cd08805 4 EMKMAVIREHLGLSWAELAREL 25 (84)
T ss_pred hhHHHHHHHHhcchHHHHHHHc
Confidence 5677888899999999999998
No 159
>PRK12542 RNA polymerase sigma factor; Provisional
Probab=20.58 E-value=3e+02 Score=24.04 Aligned_cols=30 Identities=13% Similarity=0.311 Sum_probs=24.2
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|-.-.+||..| |-+...|+.|....+++
T Consensus 136 ~~g~s~~EIA~~l-gis~~tVk~~l~Rar~~ 165 (185)
T PRK12542 136 FYNLTYQEISSVM-GITEANVRKQFERARKR 165 (185)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3466789999999 99999999988765554
No 160
>PRK00118 putative DNA-binding protein; Validated
Probab=20.04 E-value=2.9e+02 Score=23.29 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHh
Q 019307 72 DHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHL 112 (343)
Q Consensus 72 ~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~L 112 (343)
++.+..++.+....|-...+||..+ |-+...|+.+-...+
T Consensus 19 ~ekqRevl~L~y~eg~S~~EIAe~l-GIS~~TV~r~L~RAr 58 (104)
T PRK00118 19 TEKQRNYMELYYLDDYSLGEIAEEF-NVSRQAVYDNIKRTE 58 (104)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 5567777888888889999999999 999999988766543
Done!