Query 019307
Match_columns 343
No_of_seqs 324 out of 1420
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:04:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 4.2E-34 1.4E-38 234.0 10.4 105 11-116 1-105 (105)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 8.5E-34 2.9E-38 240.2 8.7 106 10-116 23-128 (128)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 1.4E-33 4.8E-38 232.6 9.6 103 14-117 1-103 (107)
4 3zqc_A MYB3; transcription-DNA 100.0 2.4E-33 8.1E-38 238.8 10.5 108 14-122 2-109 (131)
5 3osg_A MYB21; transcription-DN 100.0 8.6E-33 2.9E-37 234.1 10.7 105 8-114 5-109 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 6.7E-31 2.3E-35 229.7 8.9 107 9-116 53-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.2E-30 4.1E-35 228.1 5.7 111 12-123 4-115 (159)
8 2dim_A Cell division cycle 5-l 99.8 4.4E-22 1.5E-26 152.5 3.4 66 9-75 4-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 6.6E-22 2.3E-26 167.2 2.9 84 40-124 1-85 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 4.2E-18 1.4E-22 158.5 8.3 105 10-115 4-200 (246)
11 2din_A Cell division cycle 5-l 99.7 1.4E-17 4.9E-22 126.0 7.2 61 60-121 2-62 (66)
12 2llk_A Cyclin-D-binding MYB-li 99.7 5.4E-18 1.8E-22 132.1 4.8 57 54-111 10-66 (73)
13 2d9a_A B-MYB, MYB-related prot 99.7 1.1E-17 3.9E-22 124.2 4.0 57 9-66 3-59 (60)
14 1gvd_A MYB proto-oncogene prot 99.7 1.8E-17 6E-22 119.9 4.2 52 12-64 1-52 (52)
15 2juh_A Telomere binding protei 99.7 9.6E-18 3.3E-22 142.1 2.8 82 9-91 12-103 (121)
16 2cu7_A KIAA1915 protein; nucle 99.7 9.4E-17 3.2E-21 123.7 8.0 58 61-118 3-60 (72)
17 1guu_A C-MYB, MYB proto-oncoge 99.7 3E-17 1E-21 118.5 3.3 52 12-64 1-52 (52)
18 2dim_A Cell division cycle 5-l 99.7 7.6E-17 2.6E-21 123.3 5.6 65 62-126 4-69 (70)
19 2roh_A RTBP1, telomere binding 99.7 5.9E-17 2E-21 137.5 5.3 78 10-88 27-114 (122)
20 1ity_A TRF1; helix-turn-helix, 99.6 5.6E-17 1.9E-21 123.9 4.0 63 9-71 5-68 (69)
21 2d9a_A B-MYB, MYB-related prot 99.6 8.8E-17 3E-21 119.4 4.8 55 62-116 3-58 (60)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 4.7E-16 1.6E-20 112.2 5.8 50 65-114 1-51 (52)
23 3sjm_A Telomeric repeat-bindin 99.6 2.2E-16 7.5E-21 119.7 3.0 56 11-66 8-64 (64)
24 1ity_A TRF1; helix-turn-helix, 99.6 1.1E-15 3.7E-20 116.7 6.7 60 60-119 3-65 (69)
25 1gvd_A MYB proto-oncogene prot 99.6 8.1E-16 2.8E-20 111.1 5.2 50 65-114 1-51 (52)
26 1x41_A Transcriptional adaptor 99.6 5.9E-16 2E-20 115.4 3.2 54 10-64 4-57 (60)
27 1x41_A Transcriptional adaptor 99.6 3.5E-15 1.2E-19 111.2 6.5 53 62-114 3-56 (60)
28 1w0t_A Telomeric repeat bindin 99.6 3.8E-15 1.3E-19 108.2 6.2 49 66-114 1-52 (53)
29 1w0t_A Telomeric repeat bindin 99.5 1.9E-15 6.6E-20 109.7 3.0 50 13-62 1-51 (53)
30 2yum_A ZZZ3 protein, zinc fing 99.5 5E-15 1.7E-19 114.5 5.1 57 62-118 3-65 (75)
31 2din_A Cell division cycle 5-l 99.5 7.9E-16 2.7E-20 116.4 0.4 59 8-69 3-61 (66)
32 2yum_A ZZZ3 protein, zinc fing 99.5 1.5E-15 5E-20 117.5 1.4 61 9-70 3-68 (75)
33 3sjm_A Telomeric repeat-bindin 99.5 1E-14 3.6E-19 110.5 6.0 52 65-116 9-63 (64)
34 2elk_A SPCC24B10.08C protein; 99.5 4.1E-15 1.4E-19 110.3 2.8 51 11-61 6-56 (58)
35 2elk_A SPCC24B10.08C protein; 99.5 3E-14 1E-18 105.6 6.5 50 63-112 5-56 (58)
36 2ltp_A Nuclear receptor corepr 99.2 4E-15 1.4E-19 119.4 0.0 57 59-115 8-64 (89)
37 2cu7_A KIAA1915 protein; nucle 99.5 1E-14 3.4E-19 112.3 1.9 58 8-67 3-60 (72)
38 3zqc_A MYB3; transcription-DNA 99.4 3.7E-14 1.2E-18 120.3 2.8 81 10-96 50-130 (131)
39 3osg_A MYB21; transcription-DN 99.4 6.8E-14 2.3E-18 118.1 3.5 65 62-126 6-70 (126)
40 2aje_A Telomere repeat-binding 99.4 1.9E-13 6.6E-18 113.2 5.7 79 8-86 7-94 (105)
41 2ckx_A NGTRF1, telomere bindin 99.4 2.7E-13 9.2E-18 107.9 5.2 69 15-84 1-79 (83)
42 2cqr_A RSGI RUH-043, DNAJ homo 99.4 3.7E-13 1.3E-17 104.7 5.5 51 63-113 14-68 (73)
43 1gv2_A C-MYB, MYB proto-oncoge 99.4 2.3E-13 7.9E-18 110.8 4.5 60 64-123 1-61 (105)
44 2llk_A Cyclin-D-binding MYB-li 99.3 2.6E-13 9E-18 105.5 3.0 56 8-67 17-72 (73)
45 2k9n_A MYB24; R2R3 domain, DNA 99.3 9.9E-13 3.4E-17 107.9 5.2 59 67-125 1-60 (107)
46 2yus_A SWI/SNF-related matrix- 99.3 9.7E-13 3.3E-17 103.6 4.6 48 64-111 15-62 (79)
47 2yus_A SWI/SNF-related matrix- 99.3 1E-12 3.4E-17 103.5 3.7 51 8-60 12-62 (79)
48 2ltp_A Nuclear receptor corepr 98.9 4.3E-13 1.5E-17 107.5 0.0 54 8-63 10-63 (89)
49 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1.1E-12 3.7E-17 102.1 1.9 54 8-62 12-68 (73)
50 2ckx_A NGTRF1, telomere bindin 99.2 9.4E-12 3.2E-16 99.0 6.7 49 68-116 1-54 (83)
51 1ign_A Protein (RAP1); RAP1,ye 99.2 4.3E-12 1.5E-16 118.2 4.3 57 63-119 4-66 (246)
52 2juh_A Telomere binding protei 99.2 6.5E-12 2.2E-16 106.4 4.8 55 61-115 11-70 (121)
53 1x58_A Hypothetical protein 49 99.2 2E-11 6.7E-16 92.2 5.6 49 66-114 7-58 (62)
54 2aje_A Telomere repeat-binding 99.2 2.6E-11 8.9E-16 100.4 6.7 54 62-115 8-66 (105)
55 2cjj_A Radialis; plant develop 99.2 2.9E-11 1E-15 98.0 6.6 50 66-115 7-60 (93)
56 2roh_A RTBP1, telomere binding 99.1 7.6E-11 2.6E-15 100.0 6.9 53 63-115 27-84 (122)
57 2cjj_A Radialis; plant develop 98.9 1.8E-10 6.2E-15 93.4 1.7 48 13-61 7-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 98.9 1.3E-09 4.6E-14 81.3 6.1 47 66-112 11-57 (61)
59 3hm5_A DNA methyltransferase 1 98.9 2.4E-09 8.2E-14 86.9 7.8 66 50-119 17-87 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.8 5.5E-09 1.9E-13 80.9 6.0 50 64-114 5-58 (72)
61 2eqr_A N-COR1, N-COR, nuclear 98.7 6.5E-09 2.2E-13 77.5 3.4 52 8-61 6-57 (61)
62 1x58_A Hypothetical protein 49 98.7 9.4E-09 3.2E-13 77.6 3.4 49 12-62 6-57 (62)
63 2iw5_B Protein corest, REST co 98.6 2E-08 6.9E-13 93.0 4.9 49 66-114 132-180 (235)
64 1wgx_A KIAA1903 protein; MYB D 98.5 1.6E-07 5.6E-12 72.9 5.4 47 66-112 7-57 (73)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.5 3.3E-08 1.1E-12 76.5 1.2 50 11-62 5-57 (72)
66 2xag_B REST corepressor 1; ami 98.4 1.2E-07 4.1E-12 96.2 4.9 46 68-113 381-426 (482)
67 1fex_A TRF2-interacting telome 98.4 3.4E-07 1.1E-11 68.2 5.1 47 67-113 2-58 (59)
68 1fex_A TRF2-interacting telome 98.3 1.1E-07 3.7E-12 70.9 1.7 48 14-62 2-58 (59)
69 2iw5_B Protein corest, REST co 98.2 3.8E-07 1.3E-11 84.5 2.9 51 10-62 129-179 (235)
70 1wgx_A KIAA1903 protein; MYB D 98.2 3.4E-07 1.1E-11 71.2 2.0 48 14-62 8-58 (73)
71 1ofc_X ISWI protein; nuclear p 98.1 5E-06 1.7E-10 80.1 8.7 100 15-115 111-276 (304)
72 1ug2_A 2610100B20RIK gene prod 98.1 4.4E-06 1.5E-10 67.3 5.8 47 68-114 34-83 (95)
73 2yqk_A Arginine-glutamic acid 98.0 9.9E-06 3.4E-10 60.7 6.4 49 62-110 4-53 (63)
74 2lr8_A CAsp8-associated protei 97.1 1.8E-06 6E-11 66.2 0.0 44 69-113 16-62 (70)
75 4eef_G F-HB80.4, designed hema 97.9 2.4E-06 8.1E-11 66.4 0.4 43 67-109 20-66 (74)
76 4iej_A DNA methyltransferase 1 97.8 5.5E-05 1.9E-09 61.2 7.8 60 55-118 22-86 (93)
77 4eef_G F-HB80.4, designed hema 97.8 8.3E-06 2.9E-10 63.4 2.0 44 14-58 20-66 (74)
78 2yqk_A Arginine-glutamic acid 97.6 4.2E-05 1.4E-09 57.3 3.6 50 9-60 4-54 (63)
79 4a69_C Nuclear receptor corepr 97.5 0.00013 4.4E-09 58.9 5.9 44 67-110 43-86 (94)
80 2crg_A Metastasis associated p 97.5 0.0002 6.8E-09 54.7 6.1 43 67-109 8-51 (70)
81 2xag_B REST corepressor 1; ami 97.4 5.9E-05 2E-09 76.6 2.9 49 11-61 377-425 (482)
82 2ebi_A DNA binding protein GT- 97.2 0.00025 8.6E-09 55.5 3.9 53 67-120 4-70 (86)
83 3hm5_A DNA methyltransferase 1 97.1 0.0002 6.7E-09 58.0 2.5 50 12-62 28-81 (93)
84 4b4c_A Chromodomain-helicase-D 97.0 0.0021 7.2E-08 57.4 8.1 102 12-114 5-196 (211)
85 4a69_C Nuclear receptor corepr 96.9 0.00043 1.5E-08 55.8 2.7 44 14-59 43-86 (94)
86 2y9y_A Imitation switch protei 96.9 0.003 1E-07 62.3 9.1 105 15-120 124-297 (374)
87 2crg_A Metastasis associated p 96.8 0.00058 2E-08 52.1 2.8 45 13-59 7-52 (70)
88 2ebi_A DNA binding protein GT- 96.5 0.00026 8.9E-09 55.4 -1.4 49 13-61 3-63 (86)
89 1ug2_A 2610100B20RIK gene prod 96.1 0.0022 7.5E-08 51.7 2.2 45 15-60 34-80 (95)
90 2lr8_A CAsp8-associated protei 95.0 0.0011 3.6E-08 50.9 0.0 45 15-61 15-61 (70)
91 4b4c_A Chromodomain-helicase-D 94.1 0.035 1.2E-06 49.4 3.9 38 5-42 125-162 (211)
92 1irz_A ARR10-B; helix-turn-hel 93.4 0.2 6.8E-06 37.8 6.4 48 65-112 5-57 (64)
93 4iej_A DNA methyltransferase 1 93.2 0.044 1.5E-06 44.3 2.6 49 12-61 28-80 (93)
94 1ofc_X ISWI protein; nuclear p 93.0 0.13 4.6E-06 49.4 6.1 48 67-114 110-158 (304)
95 1irz_A ARR10-B; helix-turn-hel 87.9 0.3 1E-05 36.7 2.7 50 11-60 4-56 (64)
96 2xb0_X Chromo domain-containin 87.3 0.41 1.4E-05 45.2 3.8 28 15-42 169-196 (270)
97 2xb0_X Chromo domain-containin 73.4 6.6 0.00023 37.0 6.7 48 67-114 3-55 (270)
98 2o8x_A Probable RNA polymerase 65.8 11 0.00038 26.3 5.2 41 73-114 18-58 (70)
99 1ku3_A Sigma factor SIGA; heli 61.4 15 0.0005 26.5 5.2 41 73-114 13-57 (73)
100 1u78_A TC3 transposase, transp 58.7 59 0.002 25.4 8.9 88 15-107 5-99 (141)
101 2li6_A SWI/SNF chromatin-remod 56.3 12 0.00042 30.4 4.3 38 78-115 54-99 (116)
102 2rq5_A Protein jumonji; develo 55.9 4.1 0.00014 33.9 1.4 45 36-83 65-113 (121)
103 2p7v_B Sigma-70, RNA polymeras 55.4 16 0.00054 26.0 4.4 41 73-114 8-52 (68)
104 2y9y_A Imitation switch protei 53.2 19 0.00065 35.4 5.9 47 67-113 123-171 (374)
105 1kkx_A Transcription regulator 53.2 23 0.0008 29.2 5.6 47 78-125 53-107 (123)
106 2lm1_A Lysine-specific demethy 52.4 26 0.00089 27.7 5.7 38 78-115 49-98 (107)
107 3hug_A RNA polymerase sigma fa 50.6 30 0.001 26.0 5.5 41 73-114 40-80 (92)
108 2li6_A SWI/SNF chromatin-remod 49.5 3.5 0.00012 33.7 -0.0 39 24-63 53-98 (116)
109 2jrz_A Histone demethylase jar 49.0 24 0.0008 28.7 5.0 37 78-114 45-93 (117)
110 2jrz_A Histone demethylase jar 46.4 5.4 0.00018 32.6 0.7 40 24-63 44-93 (117)
111 1c20_A DEAD ringer protein; DN 46.3 5.2 0.00018 33.1 0.6 40 24-63 56-106 (128)
112 2cxy_A BAF250B subunit, HBAF25 46.3 52 0.0018 26.9 6.7 45 78-122 56-112 (125)
113 2cxy_A BAF250B subunit, HBAF25 45.0 5.6 0.00019 32.8 0.6 40 24-63 55-104 (125)
114 2eqy_A RBP2 like, jumonji, at 44.9 31 0.0011 28.2 5.1 38 78-115 47-96 (122)
115 1x3u_A Transcriptional regulat 43.7 50 0.0017 23.5 5.6 42 70-114 17-58 (79)
116 1or7_A Sigma-24, RNA polymeras 42.4 57 0.0019 26.8 6.5 30 84-114 154-183 (194)
117 1ig6_A MRF-2, modulator recogn 41.4 5.6 0.00019 31.8 0.0 40 24-63 37-87 (107)
118 2lm1_A Lysine-specific demethy 40.3 6.7 0.00023 31.2 0.3 41 23-63 47-97 (107)
119 2eqy_A RBP2 like, jumonji, at 39.4 7.4 0.00025 32.0 0.5 40 24-63 46-95 (122)
120 1tty_A Sigma-A, RNA polymerase 38.9 52 0.0018 24.5 5.2 41 73-114 21-65 (87)
121 2kk0_A AT-rich interactive dom 37.5 17 0.00059 30.7 2.5 40 24-63 68-118 (145)
122 3i4p_A Transcriptional regulat 37.2 28 0.00096 29.1 3.8 45 73-118 3-48 (162)
123 3c57_A Two component transcrip 37.2 60 0.002 24.7 5.4 43 69-114 27-69 (95)
124 1c20_A DEAD ringer protein; DN 37.1 49 0.0017 27.1 5.2 40 77-116 56-108 (128)
125 2jxj_A Histone demethylase jar 37.0 20 0.00068 27.8 2.6 37 78-114 41-89 (96)
126 1ig6_A MRF-2, modulator recogn 36.8 34 0.0012 27.1 4.0 37 78-114 38-87 (107)
127 1fse_A GERE; helix-turn-helix 36.0 62 0.0021 22.5 5.0 43 69-114 11-53 (74)
128 1je8_A Nitrate/nitrite respons 35.5 60 0.002 24.0 5.0 43 69-114 21-63 (82)
129 2kk0_A AT-rich interactive dom 35.0 48 0.0016 27.9 4.9 38 78-115 69-119 (145)
130 3cz6_A DNA-binding protein RAP 35.0 23 0.00079 31.2 2.9 24 10-33 110-141 (168)
131 3ulq_B Transcriptional regulat 35.0 77 0.0026 24.1 5.7 46 66-114 26-71 (90)
132 2rq5_A Protein jumonji; develo 33.9 49 0.0017 27.2 4.7 79 11-115 4-97 (121)
133 2yqf_A Ankyrin-1; death domain 33.0 63 0.0021 25.6 5.0 35 71-106 14-48 (111)
134 1rp3_A RNA polymerase sigma fa 32.5 87 0.003 26.4 6.2 37 77-114 194-230 (239)
135 3mzy_A RNA polymerase sigma-H 31.2 79 0.0027 24.8 5.5 31 83-114 121-151 (164)
136 2k27_A Paired box protein PAX- 31.0 2.1E+02 0.0072 23.1 8.5 78 14-96 23-111 (159)
137 2jpc_A SSRB; DNA binding prote 30.9 90 0.0031 21.0 5.0 38 75-114 3-40 (61)
138 3cz6_A DNA-binding protein RAP 30.4 35 0.0012 30.0 3.3 28 52-79 98-126 (168)
139 2q1z_A RPOE, ECF SIGE; ECF sig 30.3 36 0.0012 27.9 3.3 30 84-114 149-178 (184)
140 1xsv_A Hypothetical UPF0122 pr 29.9 1E+02 0.0034 24.4 5.8 41 73-114 28-68 (113)
141 2dbb_A Putative HTH-type trans 29.9 86 0.0029 25.3 5.5 44 73-117 9-53 (151)
142 1kkx_A Transcription regulator 29.4 5.3 0.00018 33.1 -2.0 39 24-63 52-97 (123)
143 1k78_A Paired box protein PAX5 28.5 1.5E+02 0.0052 23.6 6.8 78 14-96 30-118 (149)
144 3e7l_A Transcriptional regulat 27.8 85 0.0029 22.1 4.5 30 72-102 18-47 (63)
145 2rnj_A Response regulator prot 26.8 75 0.0026 23.7 4.3 43 69-114 29-71 (91)
146 2o71_A Death domain-containing 26.5 76 0.0026 25.7 4.5 29 77-106 26-54 (115)
147 1w1n_A Phosphatidylinositol 3- 26.3 6.3 0.00022 25.7 -1.7 15 201-215 16-30 (33)
148 2of5_H Leucine-rich repeat and 26.2 69 0.0023 25.8 4.2 31 75-106 13-43 (118)
149 3i4p_A Transcriptional regulat 26.0 16 0.00056 30.5 0.4 44 20-65 3-46 (162)
150 1ntc_A Protein (nitrogen regul 25.8 1E+02 0.0035 23.3 5.0 35 72-107 50-84 (91)
151 2e1c_A Putative HTH-type trans 25.4 78 0.0027 26.7 4.6 44 72-116 26-70 (171)
152 2of5_A Death domain-containing 24.6 73 0.0025 25.8 4.1 39 64-106 16-54 (114)
153 2p1m_A SKP1-like protein 1A; F 24.4 35 0.0012 28.9 2.1 35 38-80 119-153 (160)
154 2cyy_A Putative HTH-type trans 23.7 1.1E+02 0.0036 24.9 5.0 44 73-117 7-51 (151)
155 2lfw_A PHYR sigma-like domain; 23.2 1E+02 0.0035 25.0 4.8 41 73-114 96-136 (157)
156 1s7o_A Hypothetical UPF0122 pr 21.4 1.7E+02 0.0057 23.2 5.6 43 70-114 23-65 (113)
157 1p4w_A RCSB; solution structur 20.4 2.7E+02 0.0093 21.4 6.5 45 67-114 32-76 (99)
158 1k78_A Paired box protein PAX5 20.2 2.3E+02 0.008 22.4 6.4 41 67-109 30-70 (149)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=4.2e-34 Score=234.00 Aligned_cols=105 Identities=43% Similarity=0.847 Sum_probs=99.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcHH
Q 019307 11 GVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWA 90 (343)
Q Consensus 11 ~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs 90 (343)
.+++|+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCChHHHHHHHHHHhHHHH
Q 019307 91 AIASYLPQRTDNDIKNYWNTHLKKKL 116 (343)
Q Consensus 91 ~IA~~LpgRT~~qcKnRW~~~Lkkkl 116 (343)
.||++|||||++||++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998764
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=8.5e-34 Score=240.21 Aligned_cols=106 Identities=42% Similarity=0.836 Sum_probs=101.8
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcH
Q 019307 10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRW 89 (343)
Q Consensus 10 ~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkW 89 (343)
|.+++|+||+|||++|+++|++||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|++++.+||++|
T Consensus 23 p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W 101 (128)
T 1h8a_C 23 PELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW 101 (128)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 788999999999999999999999889999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCChHHHHHHHHHHhHHHH
Q 019307 90 AAIASYLPQRTDNDIKNYWNTHLKKKL 116 (343)
Q Consensus 90 s~IA~~LpgRT~~qcKnRW~~~Lkkkl 116 (343)
..||++|||||+++|++||+.++++++
T Consensus 102 ~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 102 AEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999988753
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=1.4e-33 Score=232.57 Aligned_cols=103 Identities=28% Similarity=0.605 Sum_probs=99.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcHHHHH
Q 019307 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIA 93 (343)
Q Consensus 14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA 93 (343)
||+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCChHHHHHHHHHHhHHHHh
Q 019307 94 SYLPQRTDNDIKNYWNTHLKKKLK 117 (343)
Q Consensus 94 ~~LpgRT~~qcKnRW~~~Lkkklk 117 (343)
++|||||+++||+||+.++++..+
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHH
Confidence 999999999999999998887554
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=2.4e-33 Score=238.79 Aligned_cols=108 Identities=37% Similarity=0.730 Sum_probs=103.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcHHHHH
Q 019307 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIA 93 (343)
Q Consensus 14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA 93 (343)
||+||+|||++|+++|..||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|..||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCChHHHHHHHHHHhHHHHhhhcCC
Q 019307 94 SYLPQRTDNDIKNYWNTHLKKKLKKLQTG 122 (343)
Q Consensus 94 ~~LpgRT~~qcKnRW~~~Lkkklkk~q~~ 122 (343)
.+|||||+++|++||+.+|++++.....+
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~ 109 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNH 109 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTS
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCc
Confidence 99999999999999999999987654433
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.98 E-value=8.6e-33 Score=234.13 Aligned_cols=105 Identities=36% Similarity=0.692 Sum_probs=100.7
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCC
Q 019307 8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGN 87 (343)
Q Consensus 8 dK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~Gn 87 (343)
.+...++|+||+|||++|+++|.+||. +|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 356889999999999999999999996 9999999998 99999999999999999999999999999999999999999
Q ss_pred cHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 88 RWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 88 kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
+|..||++|||||+++||+||+.++++
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998876
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=6.7e-31 Score=229.70 Aligned_cols=107 Identities=42% Similarity=0.826 Sum_probs=102.1
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCc
Q 019307 9 KIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNR 88 (343)
Q Consensus 9 K~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~Gnk 88 (343)
.|.+++|+||+|||++|+++|++||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|++++.+||++
T Consensus 53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~ 131 (159)
T 1h89_C 53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 131 (159)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCC
Confidence 3789999999999999999999999889999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHhHHHH
Q 019307 89 WAAIASYLPQRTDNDIKNYWNTHLKKKL 116 (343)
Q Consensus 89 Ws~IA~~LpgRT~~qcKnRW~~~Lkkkl 116 (343)
|..||++|||||+++|++||+.++++++
T Consensus 132 W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 132 WAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999988754
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=1.2e-30 Score=228.07 Aligned_cols=111 Identities=29% Similarity=0.600 Sum_probs=66.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCC-cHH
Q 019307 12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGN-RWA 90 (343)
Q Consensus 12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~Gn-kWs 90 (343)
+++++||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||. +|.
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 5799999999999999999999889999999998 99999999999999999999999999999999999999995 799
Q ss_pred HHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCC
Q 019307 91 AIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGS 123 (343)
Q Consensus 91 ~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~ 123 (343)
.||.+|||||++||++||+++|++.+++...+.
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~ 115 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 115 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCH
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCccccccCCCh
Confidence 999999999999999999999988765554443
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.4e-22 Score=152.53 Aligned_cols=66 Identities=26% Similarity=0.567 Sum_probs=64.0
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHH
Q 019307 9 KIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEE 75 (343)
Q Consensus 9 K~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED 75 (343)
.+.+++|+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4689999999999999999999999889999999999 99999999999999999999999999998
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.83 E-value=6.6e-22 Score=167.17 Aligned_cols=84 Identities=26% Similarity=0.545 Sum_probs=57.1
Q ss_pred ecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCChHHHHHHHHHHhHHHHhh
Q 019307 40 VPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118 (343)
Q Consensus 40 IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk 118 (343)
||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||.+|||||+.||++||+++|.+.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788898 99999999999999999999999999999999999999995 7999999999999999999999999887665
Q ss_pred hcCCCC
Q 019307 119 LQTGSD 124 (343)
Q Consensus 119 ~q~~~~ 124 (343)
...+.+
T Consensus 80 ~~WT~e 85 (128)
T 1h8a_C 80 TSWTEE 85 (128)
T ss_dssp SCCCHH
T ss_pred ccCCHH
Confidence 555443
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.73 E-value=4.2e-18 Score=158.54 Aligned_cols=105 Identities=15% Similarity=0.243 Sum_probs=91.8
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCC-----CceecccCCCCCChhhhhhhhhhcccCCCc------------------
Q 019307 10 IGVKKGPWTPEEDIILVSYIQEHGPGN-----WRSVPTNTGLLRCSKSCRLRWTNYLRPGIK------------------ 66 (343)
Q Consensus 10 ~~ikKG~WT~EEDe~L~~lV~~~G~~n-----W~~IA~~l~~~Rt~kQCR~RW~n~L~P~ik------------------ 66 (343)
..+++++||+|||++|+++|+++|..+ |..||+.|+ |||+.|||.||.++|.+.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 467899999999999999999998542 999999999 99999999999999999886
Q ss_pred -----------cCCCChHHHHHHHHHHHH-h--------------------------------C----------------
Q 019307 67 -----------RGNFTDHEEKMIIHLQAL-L--------------------------------G---------------- 86 (343)
Q Consensus 67 -----------rg~WT~EED~~Ll~lv~~-~--------------------------------G---------------- 86 (343)
+..||.+||-.|+..+.+ | +
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 789999999999998876 1 1
Q ss_pred ---------CcHHHHHhhCCCCChHHHHHHHHHHhHHH
Q 019307 87 ---------NRWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (343)
Q Consensus 87 ---------nkWs~IA~~LpgRT~~qcKnRW~~~Lkkk 115 (343)
..|..||+.+|+||.+.+|+||..+|+..
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 16999999999999999999999888664
No 11
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=126.03 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=57.5
Q ss_pred cccCCCccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcC
Q 019307 60 YLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQT 121 (343)
Q Consensus 60 ~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~ 121 (343)
+|+|.+++++||+|||++|++++++||++|..||. |+|||++|||+||+.+|++.+++...
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 79999999999999999999999999999999999 88999999999999999999876543
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.71 E-value=5.4e-18 Score=132.06 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=46.8
Q ss_pred hhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHH
Q 019307 54 RLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 111 (343)
Q Consensus 54 R~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~ 111 (343)
--||.++|+|++++++||+|||++|+++|.+||++|+.||++| |||++|||+||+.+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 99999999999864
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=1.1e-17 Score=124.22 Aligned_cols=57 Identities=25% Similarity=0.470 Sum_probs=54.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCc
Q 019307 9 KIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIK 66 (343)
Q Consensus 9 K~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ik 66 (343)
.|.+++++||+|||++|+++|.+||.++|..||..|+ +|+..||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 3688999999999999999999999889999999998 99999999999999999876
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.68 E-value=1.8e-17 Score=119.87 Aligned_cols=52 Identities=42% Similarity=0.828 Sum_probs=49.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCC
Q 019307 12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPG 64 (343)
Q Consensus 12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ 64 (343)
+++|+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999879999999998 999999999999999984
No 15
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.67 E-value=9.6e-18 Score=142.14 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=76.8
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccC----CCCCChhhhhhhhhhccc-----CCCccC-CCChHHHHHH
Q 019307 9 KIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNT----GLLRCSKSCRLRWTNYLR-----PGIKRG-NFTDHEEKMI 78 (343)
Q Consensus 9 K~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l----~~~Rt~kQCR~RW~n~L~-----P~ikrg-~WT~EED~~L 78 (343)
++..++++||+|||+.|+++|++||.++|..|+..+ + +|+..+|++||.++|+ |.++++ +|+++|+.+|
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 457889999999999999999999988999999874 5 8999999999999998 999999 9999999999
Q ss_pred HHHHHHhCCcHHH
Q 019307 79 IHLQALLGNRWAA 91 (343)
Q Consensus 79 l~lv~~~GnkWs~ 91 (343)
+.++..+||+|.+
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999976
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.67 E-value=9.4e-17 Score=123.67 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=55.5
Q ss_pred ccCCCccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHHHhh
Q 019307 61 LRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118 (343)
Q Consensus 61 L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk 118 (343)
++|.+++++||+|||++|+++|.+||++|..||.+|||||++|||+||+.++++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999998765
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.66 E-value=3e-17 Score=118.54 Aligned_cols=52 Identities=29% Similarity=0.644 Sum_probs=48.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCC
Q 019307 12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPG 64 (343)
Q Consensus 12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ 64 (343)
+++++||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999889999999998 999999999999999984
No 18
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.6e-17 Score=123.34 Aligned_cols=65 Identities=23% Similarity=0.410 Sum_probs=60.4
Q ss_pred cCCCccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCCC
Q 019307 62 RPGIKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGG 126 (343)
Q Consensus 62 ~P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~~ 126 (343)
.|.+++++||+|||++|+++|.+|| ++|..||.+|++||+.|||+||+++|++.+++..++.+++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4788999999999999999999999 7999999999999999999999999999999888776653
No 19
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.65 E-value=5.9e-17 Score=137.50 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=72.2
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCceecccC----CCCCChhhhhhhhhhcc-----cCCCccCCCChHH-HHHHH
Q 019307 10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNT----GLLRCSKSCRLRWTNYL-----RPGIKRGNFTDHE-EKMII 79 (343)
Q Consensus 10 ~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l----~~~Rt~kQCR~RW~n~L-----~P~ikrg~WT~EE-D~~Ll 79 (343)
...++++||+|||+.|+++|++||.++|..|+..+ + +|+..+|++||.|++ +|.++++.|+++| +.+|+
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 45778999999999999999999999999999863 5 899999999999999 7999999999999 89999
Q ss_pred HHHHHhCCc
Q 019307 80 HLQALLGNR 88 (343)
Q Consensus 80 ~lv~~~Gnk 88 (343)
.++..||++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999975
No 20
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.65 E-value=5.6e-17 Score=123.87 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=58.4
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCC-CCChhhhhhhhhhcccCCCccCCCC
Q 019307 9 KIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGL-LRCSKSCRLRWTNYLRPGIKRGNFT 71 (343)
Q Consensus 9 K~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~-~Rt~kQCR~RW~n~L~P~ikrg~WT 71 (343)
++..++++||+|||++|+++|++||.++|..||..|++ +|++.||++||.++|+|.+.++...
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 46788999999999999999999998899999999986 8999999999999999999987764
No 21
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=8.8e-17 Score=119.39 Aligned_cols=55 Identities=24% Similarity=0.396 Sum_probs=52.2
Q ss_pred cCCCccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHHHH
Q 019307 62 RPGIKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKL 116 (343)
Q Consensus 62 ~P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkkkl 116 (343)
+|.+++++||+|||++|+++|.+|| ++|..||.+|++||+.|||+||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999 699999999999999999999999998865
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.61 E-value=4.7e-16 Score=112.22 Aligned_cols=50 Identities=30% Similarity=0.606 Sum_probs=46.6
Q ss_pred CccCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 65 IKRGNFTDHEEKMIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
+++++||+|||++|+++|.+||. +|..||.+|+|||+.||++||+++|+|
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 999999999999999999999999876
No 23
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.60 E-value=2.2e-16 Score=119.75 Aligned_cols=56 Identities=30% Similarity=0.498 Sum_probs=49.9
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCC-CCChhhhhhhhhhcccCCCc
Q 019307 11 GVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGL-LRCSKSCRLRWTNYLRPGIK 66 (343)
Q Consensus 11 ~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~-~Rt~kQCR~RW~n~L~P~ik 66 (343)
..+|++||+|||++|+++|++||.++|..||+.+++ +|++.||++||.++++|+++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 457999999999999999999999999999987652 79999999999999998874
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.60 E-value=1.1e-15 Score=116.69 Aligned_cols=60 Identities=25% Similarity=0.243 Sum_probs=55.1
Q ss_pred cccCCCccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC--CCChHHHHHHHHHHhHHHHhhh
Q 019307 60 YLRPGIKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLP--QRTDNDIKNYWNTHLKKKLKKL 119 (343)
Q Consensus 60 ~L~P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp--gRT~~qcKnRW~~~Lkkklkk~ 119 (343)
...|..++++||+|||++|+++|.+|| ++|..||.+|+ +||+.|||+||+++|++.+.+.
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 356778899999999999999999999 69999999999 9999999999999999987653
No 25
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.59 E-value=8.1e-16 Score=111.08 Aligned_cols=50 Identities=30% Similarity=0.634 Sum_probs=47.3
Q ss_pred CccCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 65 IKRGNFTDHEEKMIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
+++++||+|||++|+++|.+||. +|..||.+|+|||++|||+||+++|+|
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999996 699999999999999999999999875
No 26
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=5.9e-16 Score=115.38 Aligned_cols=54 Identities=20% Similarity=0.509 Sum_probs=51.2
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCC
Q 019307 10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPG 64 (343)
Q Consensus 10 ~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ 64 (343)
+.+++++||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 478999999999999999999999889999999999 999999999999999765
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=3.5e-15 Score=111.16 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=49.6
Q ss_pred cCCCccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 62 RPGIKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 62 ~P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.+.+.+++||+|||++|+++|.+|| ++|.+||++|++||+.|||+||+++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3678899999999999999999999 7999999999999999999999998764
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.56 E-value=3.8e-15 Score=108.18 Aligned_cols=49 Identities=27% Similarity=0.324 Sum_probs=46.4
Q ss_pred ccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC--CCChHHHHHHHHHHhHH
Q 019307 66 KRGNFTDHEEKMIIHLQALLG-NRWAAIASYLP--QRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp--gRT~~qcKnRW~~~Lkk 114 (343)
++++||+|||++|+++|.+|| ++|..||.+|+ +||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 578999999999999999999 69999999999 99999999999999874
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.54 E-value=1.9e-15 Score=109.74 Aligned_cols=50 Identities=30% Similarity=0.476 Sum_probs=47.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCceecccCCC-CCChhhhhhhhhhccc
Q 019307 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGL-LRCSKSCRLRWTNYLR 62 (343)
Q Consensus 13 kKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~-~Rt~kQCR~RW~n~L~ 62 (343)
++|+||+|||++|+++|.+||.++|..||..+++ +|++.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999976 6999999999999875
No 30
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5e-15 Score=114.47 Aligned_cols=57 Identities=23% Similarity=0.217 Sum_probs=52.8
Q ss_pred cCCCccCCCChHHHHHHHHHHHHhC------CcHHHHHhhCCCCChHHHHHHHHHHhHHHHhh
Q 019307 62 RPGIKRGNFTDHEEKMIIHLQALLG------NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118 (343)
Q Consensus 62 ~P~ikrg~WT~EED~~Ll~lv~~~G------nkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk 118 (343)
+|.+++++||+|||++|+++|.+|| ++|..||.+|++||++||++||+++|.+.++.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999 78999999999999999999999999886543
No 31
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=7.9e-16 Score=116.38 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=53.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCC
Q 019307 8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGN 69 (343)
Q Consensus 8 dK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~ 69 (343)
-.|.+++++||+|||++|+++|+.||. +|..||. ++ +|++.||++||.++|+|.++++.
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 367899999999999999999999995 9999999 76 79999999999999999877653
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-15 Score=117.51 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=56.4
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCC-----CCCceecccCCCCCChhhhhhhhhhcccCCCccCCC
Q 019307 9 KIGVKKGPWTPEEDIILVSYIQEHGP-----GNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNF 70 (343)
Q Consensus 9 K~~ikKG~WT~EEDe~L~~lV~~~G~-----~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~W 70 (343)
+|.+++++||+|||++|+++|.+||. ++|..||..|+ +|+..||+.||++||.+.++.|..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence 57899999999999999999999996 68999999999 999999999999999988877643
No 33
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.52 E-value=1e-14 Score=110.47 Aligned_cols=52 Identities=29% Similarity=0.439 Sum_probs=47.5
Q ss_pred CccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC--CCChHHHHHHHHHHhHHHH
Q 019307 65 IKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLP--QRTDNDIKNYWNTHLKKKL 116 (343)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp--gRT~~qcKnRW~~~Lkkkl 116 (343)
.++++||+|||++|+++|.+|| ++|..||++++ +||+.|||+||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999 58999999976 9999999999999998754
No 34
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.51 E-value=4.1e-15 Score=110.29 Aligned_cols=51 Identities=22% Similarity=0.511 Sum_probs=47.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcc
Q 019307 11 GVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 (343)
Q Consensus 11 ~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L 61 (343)
.+.+++||+|||++|+++|++||.++|..||+.|+.+|++.||++||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 466899999999999999999998899999999987899999999999875
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.50 E-value=3e-14 Score=105.63 Aligned_cols=50 Identities=26% Similarity=0.432 Sum_probs=46.4
Q ss_pred CCCccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC-CCChHHHHHHHHHHh
Q 019307 63 PGIKRGNFTDHEEKMIIHLQALLG-NRWAAIASYLP-QRTDNDIKNYWNTHL 112 (343)
Q Consensus 63 P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp-gRT~~qcKnRW~~~L 112 (343)
..+.+++||+|||++|+++|.+|| ++|..||++|+ +||+.|||+||++++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 356788999999999999999999 89999999999 999999999999864
No 36
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.20 E-value=4e-15 Score=119.40 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=53.4
Q ss_pred hcccCCCccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHH
Q 019307 59 NYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (343)
Q Consensus 59 n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkk 115 (343)
..+.|.+++++||+|||++|+++|.+||++|..||.+|+|||++|||+||++++++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 356789999999999999999999999999999999999999999999999988763
No 37
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.46 E-value=1e-14 Score=112.30 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=53.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCcc
Q 019307 8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKR 67 (343)
Q Consensus 8 dK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikr 67 (343)
..|.+++++||+|||++|+++|.+||. +|..||..|+ +|+..||+.||+++|++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999995 9999999999 999999999999999877666
No 38
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.42 E-value=3.7e-14 Score=120.32 Aligned_cols=81 Identities=20% Similarity=0.278 Sum_probs=60.7
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcH
Q 019307 10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRW 89 (343)
Q Consensus 10 ~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkW 89 (343)
|.+++|+||+|||++|+++|.+|| .+|..||..|+ +|+..+|+.||.++|++.+..+.|+.+-- ........+|
T Consensus 50 p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~~----~p~~~kk~~~ 123 (131)
T 3zqc_A 50 PAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEIL----LPDRSKKRKA 123 (131)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCCC----CCCCC-----
T ss_pred ccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCccccc----Cchhhhhhhh
Confidence 789999999999999999999999 59999999998 99999999999999999999999887631 1112224568
Q ss_pred HHHHhhC
Q 019307 90 AAIASYL 96 (343)
Q Consensus 90 s~IA~~L 96 (343)
+.|++.|
T Consensus 124 ~~i~k~~ 130 (131)
T 3zqc_A 124 ADVPKKL 130 (131)
T ss_dssp -------
T ss_pred hhcchhc
Confidence 8887765
No 39
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.41 E-value=6.8e-14 Score=118.06 Aligned_cols=65 Identities=22% Similarity=0.423 Sum_probs=58.6
Q ss_pred cCCCccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCCC
Q 019307 62 RPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGG 126 (343)
Q Consensus 62 ~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~~ 126 (343)
.+..++++||+|||++|+++|.+||.+|..||..|++||+.||+.||+++|.+.+++...+.+++
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd 70 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEED 70 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHH
Confidence 45788999999999999999999999999999999999999999999999999887777665543
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.40 E-value=1.9e-13 Score=113.17 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=67.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCC---CCCChhhhhhhhhhcc-----cCCCccCCCChHHHHH-H
Q 019307 8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG---LLRCSKSCRLRWTNYL-----RPGIKRGNFTDHEEKM-I 78 (343)
Q Consensus 8 dK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~---~~Rt~kQCR~RW~n~L-----~P~ikrg~WT~EED~~-L 78 (343)
.+...++++||+|||+.|+++|++||.++|..|+..++ .+||..+|++||.+++ +|.++++.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 34678899999999999999999999999999998652 2899999999999998 6999999888888766 7
Q ss_pred HHHHHHhC
Q 019307 79 IHLQALLG 86 (343)
Q Consensus 79 l~lv~~~G 86 (343)
++|+..+|
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777655
No 41
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.38 E-value=2.7e-13 Score=107.89 Aligned_cols=69 Identities=22% Similarity=0.422 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeccc----CCCCCChhhhhhhhhhcc-----cCCCccC-CCChHHHHHHHHHHHH
Q 019307 15 GPWTPEEDIILVSYIQEHGPGNWRSVPTN----TGLLRCSKSCRLRWTNYL-----RPGIKRG-NFTDHEEKMIIHLQAL 84 (343)
Q Consensus 15 G~WT~EEDe~L~~lV~~~G~~nW~~IA~~----l~~~Rt~kQCR~RW~n~L-----~P~ikrg-~WT~EED~~Ll~lv~~ 84 (343)
++||+|||+.|+++|++||.++|..|++. ++ +||..+|++||.|++ +|.++++ +..++....++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999985 76 899999999999988 5776665 6677777888888765
No 42
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.38 E-value=3.7e-13 Score=104.70 Aligned_cols=51 Identities=14% Similarity=0.281 Sum_probs=47.5
Q ss_pred CCCccCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307 63 PGIKRGNFTDHEEKMIIHLQALLG----NRWAAIASYLPQRTDNDIKNYWNTHLK 113 (343)
Q Consensus 63 P~ikrg~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (343)
+.+.+++||.+||++|++++..|| ++|.+||.+|||||++||++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999999 689999999999999999999998764
No 43
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.38 E-value=2.3e-13 Score=110.76 Aligned_cols=60 Identities=28% Similarity=0.547 Sum_probs=53.0
Q ss_pred CCccCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCC
Q 019307 64 GIKRGNFTDHEEKMIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGS 123 (343)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~ 123 (343)
++++++||+|||++|+++|.+||. +|..||.+|||||+.||+.||.++|.+.+++...+.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~ 61 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCH
Confidence 368999999999999999999996 799999999999999999999999987665544443
No 44
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.35 E-value=2.6e-13 Score=105.54 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=47.9
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCcc
Q 019307 8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKR 67 (343)
Q Consensus 8 dK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikr 67 (343)
..|.+++|+||+|||++|+++|++||. +|..||+.| +|++.||+.||.. |....+.
T Consensus 17 ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 17 QGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp --CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 358999999999999999999999995 699999999 6999999999985 5444443
No 45
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.32 E-value=9.9e-13 Score=107.85 Aligned_cols=59 Identities=19% Similarity=0.389 Sum_probs=53.3
Q ss_pred cCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCC
Q 019307 67 RGNFTDHEEKMIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDG 125 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~ 125 (343)
+++||+|||++|+++|..||. +|..||.+||+||+.||+.||.++|.+.+++...+.++
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eE 60 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHH
Confidence 579999999999999999995 89999999999999999999999999887766666544
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.32 E-value=9.7e-13 Score=103.59 Aligned_cols=48 Identities=10% Similarity=0.261 Sum_probs=45.3
Q ss_pred CCccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHH
Q 019307 64 GIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 111 (343)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~ 111 (343)
...+++||+|||++|++++.+||++|.+||++|++||+.||++||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999865
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.30 E-value=1e-12 Score=103.52 Aligned_cols=51 Identities=22% Similarity=0.481 Sum_probs=47.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhc
Q 019307 8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60 (343)
Q Consensus 8 dK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~ 60 (343)
.+....+++||+|||++|+++|++|| ++|..||..|+ +|+..||+.||.++
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 45667789999999999999999999 89999999999 89999999999998
No 48
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.92 E-value=4.3e-13 Score=107.51 Aligned_cols=54 Identities=24% Similarity=0.411 Sum_probs=50.2
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccC
Q 019307 8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63 (343)
Q Consensus 8 dK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P 63 (343)
..|.+++|+||+|||++|+++|..||. +|..||..|+ +|+..||+.||.++|+.
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 457899999999999999999999995 8999999999 99999999999999863
No 49
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.26 E-value=1.1e-12 Score=102.07 Aligned_cols=54 Identities=15% Similarity=0.387 Sum_probs=49.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhC---CCCCceecccCCCCCChhhhhhhhhhccc
Q 019307 8 DKIGVKKGPWTPEEDIILVSYIQEHG---PGNWRSVPTNTGLLRCSKSCRLRWTNYLR 62 (343)
Q Consensus 8 dK~~ikKG~WT~EEDe~L~~lV~~~G---~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~ 62 (343)
+++.+.+++||+|||++|+++|..|| +.+|..||..|| +|+.+||+.||.+++.
T Consensus 12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 56778899999999999999999999 358999999999 9999999999998764
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.24 E-value=9.4e-12 Score=98.97 Aligned_cols=49 Identities=24% Similarity=0.432 Sum_probs=45.3
Q ss_pred CCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCChHHHHHHHHHHhHHHH
Q 019307 68 GNFTDHEEKMIIHLQALLGN-RWAAIASY----LPQRTDNDIKNYWNTHLKKKL 116 (343)
Q Consensus 68 g~WT~EED~~Ll~lv~~~Gn-kWs~IA~~----LpgRT~~qcKnRW~~~Lkkkl 116 (343)
++||+|||+.|+++|++||. +|+.|++. |++||+.+||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999996 99999996 899999999999999998653
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.22 E-value=4.3e-12 Score=118.25 Aligned_cols=57 Identities=28% Similarity=0.566 Sum_probs=50.3
Q ss_pred CCCccCCCChHHHHHHHHHHHHhCCc------HHHHHhhCCCCChHHHHHHHHHHhHHHHhhh
Q 019307 63 PGIKRGNFTDHEEKMIIHLQALLGNR------WAAIASYLPQRTDNDIKNYWNTHLKKKLKKL 119 (343)
Q Consensus 63 P~ikrg~WT~EED~~Ll~lv~~~Gnk------Ws~IA~~LpgRT~~qcKnRW~~~Lkkklkk~ 119 (343)
+.+++++||+|||++|+++|.+||++ |.+||++|||||++|||+||+.+|++++...
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v 66 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV 66 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc
Confidence 35788999999999999999999975 9999999999999999999999999988744
No 52
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.22 E-value=6.5e-12 Score=106.40 Aligned_cols=55 Identities=25% Similarity=0.415 Sum_probs=50.3
Q ss_pred ccCCCccCCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCChHHHHHHHHHHhHHH
Q 019307 61 LRPGIKRGNFTDHEEKMIIHLQALLGN-RWAAIASY----LPQRTDNDIKNYWNTHLKKK 115 (343)
Q Consensus 61 L~P~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~----LpgRT~~qcKnRW~~~Lkkk 115 (343)
+.+..++++||+|||+.|+++|.+||. +|+.|+.. |++||+.+||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 456788999999999999999999997 99999998 48999999999999999853
No 53
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.19 E-value=2e-11 Score=92.21 Aligned_cols=49 Identities=22% Similarity=0.455 Sum_probs=45.4
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcHHHHH---hhCCCCChHHHHHHHHHHhHH
Q 019307 66 KRGNFTDHEEKMIIHLQALLGNRWAAIA---SYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~GnkWs~IA---~~LpgRT~~qcKnRW~~~Lkk 114 (343)
++.+||+|||+.|+++|++||.+|..|+ .++++||+.+||+||+++.+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6789999999999999999999999999 577999999999999998764
No 54
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.18 E-value=2.6e-11 Score=100.41 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=48.5
Q ss_pred cCCCccCCCChHHHHHHHHHHHHhCC-cHHHHHhhC----CCCChHHHHHHHHHHhHHH
Q 019307 62 RPGIKRGNFTDHEEKMIIHLQALLGN-RWAAIASYL----PQRTDNDIKNYWNTHLKKK 115 (343)
Q Consensus 62 ~P~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~L----pgRT~~qcKnRW~~~Lkkk 115 (343)
.+..++++||+|||+.|+++|.+||. +|+.|++.+ ++||+.+||+||+++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34678899999999999999999996 999999965 8999999999999998754
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.18 E-value=2.9e-11 Score=98.02 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=45.4
Q ss_pred ccCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCChHHHHHHHHHHhHHH
Q 019307 66 KRGNFTDHEEKMIIHLQALLG----NRWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (343)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~Lkkk 115 (343)
.+++||.|||++|++++.+|| ++|.+||.+|||||++||++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 78999999999999999999999987663
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.12 E-value=7.6e-11 Score=99.97 Aligned_cols=53 Identities=26% Similarity=0.442 Sum_probs=48.0
Q ss_pred CCCccCCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCChHHHHHHHHHHhHHH
Q 019307 63 PGIKRGNFTDHEEKMIIHLQALLGN-RWAAIASY----LPQRTDNDIKNYWNTHLKKK 115 (343)
Q Consensus 63 P~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~----LpgRT~~qcKnRW~~~Lkkk 115 (343)
...++++||.|||+.|+++|++||. +|+.|++. |++||+.|||+||+++++..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3557899999999999999999996 99999986 38999999999999999764
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.93 E-value=1.8e-10 Score=93.38 Aligned_cols=48 Identities=15% Similarity=0.367 Sum_probs=43.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhC---CCCCceecccCCCCCChhhhhhhhhhcc
Q 019307 13 KKGPWTPEEDIILVSYIQEHG---PGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 (343)
Q Consensus 13 kKG~WT~EEDe~L~~lV~~~G---~~nW~~IA~~l~~~Rt~kQCR~RW~n~L 61 (343)
.+++||+|||++|++++..|+ ++.|..||..+| +|+..+|+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 378999999999999999997 467999999999 999999999999864
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.3e-09 Score=81.31 Aligned_cols=47 Identities=23% Similarity=0.276 Sum_probs=43.5
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHh
Q 019307 66 KRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHL 112 (343)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~L 112 (343)
..++||+||++++++++.+||.+|..||.+||+||..||+.+|....
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999997643
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.92 E-value=2.4e-09 Score=86.87 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=58.8
Q ss_pred hhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcHHHHHhhC-----CCCChHHHHHHHHHHhHHHHhhh
Q 019307 50 SKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYL-----PQRTDNDIKNYWNTHLKKKLKKL 119 (343)
Q Consensus 50 ~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~L-----pgRT~~qcKnRW~~~Lkkklkk~ 119 (343)
+.=+.++|.++|.+ .+||.||+..|++|+++|+.+|..|+..+ ++||..+||+||..+.++-++..
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34678999999976 89999999999999999999999999998 58999999999999888765544
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.81 E-value=5.5e-09 Score=80.90 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=45.0
Q ss_pred CCccCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 64 GIKRGNFTDHEEKMIIHLQALLG----NRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..+.+.||.|||++|.+++.+|+ ++|.+||.+| |||.++|++||+.+++.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 35678999999999999999997 6899999998 99999999999987555
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=6.5e-09 Score=77.54 Aligned_cols=52 Identities=15% Similarity=0.154 Sum_probs=46.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcc
Q 019307 8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 (343)
Q Consensus 8 dK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L 61 (343)
++.....++||+||++++++++..|| .+|..||..|+ +|+..||+++|....
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 44456679999999999999999999 69999999999 999999999997643
No 62
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.67 E-value=9.4e-09 Score=77.57 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=43.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCceec---ccCCCCCChhhhhhhhhhccc
Q 019307 12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVP---TNTGLLRCSKSCRLRWTNYLR 62 (343)
Q Consensus 12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA---~~l~~~Rt~kQCR~RW~n~L~ 62 (343)
..+++||+|||+.|++.|++||. +|..|+ ..+. +|+...+++||.+..+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 36899999999999999999996 999999 4555 8999999999998654
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.63 E-value=2e-08 Score=92.98 Aligned_cols=49 Identities=14% Similarity=0.310 Sum_probs=45.8
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 66 KRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
...+||+||+.++++++.+||++|..||+.|++||..|||++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999987765
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.47 E-value=1.6e-07 Score=72.95 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=42.6
Q ss_pred ccCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCChHHHHHHHHHHh
Q 019307 66 KRGNFTDHEEKMIIHLQALLG----NRWAAIASYLPQRTDNDIKNYWNTHL 112 (343)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~L 112 (343)
....||.+|+++|.+++..|+ .+|.+||.++||||..+|+.||..++
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 346899999999999999998 47999999999999999999998763
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.46 E-value=3.3e-08 Score=76.50 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=43.8
Q ss_pred CCccCCCCHHHHHHHHHHHHHhC---CCCCceecccCCCCCChhhhhhhhhhccc
Q 019307 11 GVKKGPWTPEEDIILVSYIQEHG---PGNWRSVPTNTGLLRCSKSCRLRWTNYLR 62 (343)
Q Consensus 11 ~ikKG~WT~EEDe~L~~lV~~~G---~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~ 62 (343)
..+.+.||.|||++|.+++.+|+ ++.|..||..+ +|+..+|+.||..+..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 45678999999999999999998 35799999997 4999999999987654
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.43 E-value=1.2e-07 Score=96.18 Aligned_cols=46 Identities=15% Similarity=0.329 Sum_probs=42.6
Q ss_pred CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307 68 GNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK 113 (343)
Q Consensus 68 g~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (343)
..||++|-.++++++.+||.+|..||.+++.||..|||++|..+.+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999976443
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.38 E-value=3.4e-07 Score=68.20 Aligned_cols=47 Identities=30% Similarity=0.476 Sum_probs=42.3
Q ss_pred cCCCChHHHHHHHHHHHHh--------CCc-HHHHHh-hCCCCChHHHHHHHHHHhH
Q 019307 67 RGNFTDHEEKMIIHLQALL--------GNR-WAAIAS-YLPQRTDNDIKNYWNTHLK 113 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~--------Gnk-Ws~IA~-~LpgRT~~qcKnRW~~~Lk 113 (343)
|.+||+|||..|++.|.+| |+. |.+++. .+|++|-.+||+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 543 999999 8999999999999988764
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.35 E-value=1.1e-07 Score=70.88 Aligned_cols=48 Identities=21% Similarity=0.482 Sum_probs=42.6
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCCceecc-cCCCCCChhhhhhhhhhccc
Q 019307 14 KGPWTPEEDIILVSYIQEH--------GPGNWRSVPT-NTGLLRCSKSCRLRWTNYLR 62 (343)
Q Consensus 14 KG~WT~EEDe~L~~lV~~~--------G~~nW~~IA~-~l~~~Rt~kQCR~RW~n~L~ 62 (343)
|.+||+|||+.|+++|.+| |..-|+.++. .++ .++..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5689999999999999999 4345999999 787 9999999999999874
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.24 E-value=3.8e-07 Score=84.49 Aligned_cols=51 Identities=24% Similarity=0.438 Sum_probs=46.3
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhccc
Q 019307 10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLR 62 (343)
Q Consensus 10 ~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~ 62 (343)
.....++||+||++++++++.+|| ++|..||+.++ +|+..||+.+|.++.+
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344578999999999999999999 69999999999 9999999999998764
No 70
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.23 E-value=3.4e-07 Score=71.20 Aligned_cols=48 Identities=21% Similarity=0.407 Sum_probs=43.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCCceecccCCCCCChhhhhhhhhhccc
Q 019307 14 KGPWTPEEDIILVSYIQEHGP---GNWRSVPTNTGLLRCSKSCRLRWTNYLR 62 (343)
Q Consensus 14 KG~WT~EEDe~L~~lV~~~G~---~nW~~IA~~l~~~Rt~kQCR~RW~n~L~ 62 (343)
...||.+|+++|.+++..|+. ++|..||..+| +|+..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 468999999999999999975 47999999999 8999999999998754
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.15 E-value=5e-06 Score=80.06 Aligned_cols=100 Identities=14% Similarity=0.239 Sum_probs=80.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhh----hc--cc--------------------------
Q 019307 15 GPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWT----NY--LR-------------------------- 62 (343)
Q Consensus 15 G~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~----n~--L~-------------------------- 62 (343)
+.||..+...++.++.+||..+|..||..|+ +++...++..+. ++ |.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998 888877644211 11 00
Q ss_pred ------------------CCCccCCCChHHHHHHHHHHHHhCC----cHHHHHh------------hCCCCChHHHHHHH
Q 019307 63 ------------------PGIKRGNFTDHEEKMIIHLQALLGN----RWAAIAS------------YLPQRTDNDIKNYW 108 (343)
Q Consensus 63 ------------------P~ikrg~WT~EED~~Ll~lv~~~Gn----kWs~IA~------------~LpgRT~~qcKnRW 108 (343)
+..+...||++||..||-++.+||- .|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 2234568999999999999999994 6999962 45679999999999
Q ss_pred HHHhHHH
Q 019307 109 NTHLKKK 115 (343)
Q Consensus 109 ~~~Lkkk 115 (343)
+.+++--
T Consensus 270 ~tLi~~i 276 (304)
T 1ofc_X 270 NTLITLI 276 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.08 E-value=4.4e-06 Score=67.35 Aligned_cols=47 Identities=13% Similarity=0.275 Sum_probs=43.6
Q ss_pred CCCChHHHHHHHHHHHHhCC---cHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 68 GNFTDHEEKMIIHLQALLGN---RWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 68 g~WT~EED~~Ll~lv~~~Gn---kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
--||.|||+.||...++-|. .|+.||+.|.+|+.+||++||+.+++-
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 36999999999999999986 899999999999999999999998765
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=9.9e-06 Score=60.73 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=44.8
Q ss_pred cCCCccCCCChHHHHHHHHHHHHhCCcHHHHHh-hCCCCChHHHHHHHHH
Q 019307 62 RPGIKRGNFTDHEEKMIIHLQALLGNRWAAIAS-YLPQRTDNDIKNYWNT 110 (343)
Q Consensus 62 ~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~-~LpgRT~~qcKnRW~~ 110 (343)
.|.++...||+||-++..+.+.+||.+|..|++ .|++||..+|..+|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 367788899999999999999999999999999 5899999999998863
No 74
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.10 E-value=1.8e-06 Score=66.22 Aligned_cols=44 Identities=18% Similarity=0.344 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHHHHhCC---cHHHHHhhCCCCChHHHHHHHHHHhH
Q 019307 69 NFTDHEEKMIIHLQALLGN---RWAAIASYLPQRTDNDIKNYWNTHLK 113 (343)
Q Consensus 69 ~WT~EED~~Ll~lv~~~Gn---kWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (343)
-||.|||+.||..+++-|. .|+.||..| +|+++||++||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999996 799999999 9999999999998775
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.86 E-value=2.4e-06 Score=66.45 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=38.7
Q ss_pred cCCCChHHHHHHHHHHHHhCC----cHHHHHhhCCCCChHHHHHHHH
Q 019307 67 RGNFTDHEEKMIIHLQALLGN----RWAAIASYLPQRTDNDIKNYWN 109 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~Gn----kWs~IA~~LpgRT~~qcKnRW~ 109 (343)
...||.+|+++|..++..|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999885
No 76
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.82 E-value=5.5e-05 Score=61.24 Aligned_cols=60 Identities=18% Similarity=0.265 Sum_probs=50.2
Q ss_pred hhhhhcccCCCccCCCChHHHHHHHHHHHHhCCcHHHHHhhCC-----CCChHHHHHHHHHHhHHHHhh
Q 019307 55 LRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLP-----QRTDNDIKNYWNTHLKKKLKK 118 (343)
Q Consensus 55 ~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~Lp-----gRT~~qcKnRW~~~Lkkklkk 118 (343)
+.|..+|. ...||.||...|++|+++|+-+|..|+..+. .||-.++|.||..+.++-++.
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34555564 3689999999999999999999999998763 799999999999988775543
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.75 E-value=8.3e-06 Score=63.39 Aligned_cols=44 Identities=16% Similarity=0.345 Sum_probs=39.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---CCceecccCCCCCChhhhhhhhh
Q 019307 14 KGPWTPEEDIILVSYIQEHGPG---NWRSVPTNTGLLRCSKSCRLRWT 58 (343)
Q Consensus 14 KG~WT~EEDe~L~~lV~~~G~~---nW~~IA~~l~~~Rt~kQCR~RW~ 58 (343)
...||.||+++|..++..|... .|.+||..+| ||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4589999999999999999754 7999999999 999999999985
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=4.2e-05 Score=57.30 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=44.5
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCceecc-cCCCCCChhhhhhhhhhc
Q 019307 9 KIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPT-NTGLLRCSKSCRLRWTNY 60 (343)
Q Consensus 9 K~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~-~l~~~Rt~kQCR~RW~n~ 60 (343)
.|.++...||+||-++..+++.+|| .+|..|++ .++ .|+..+|.+.|...
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhcc
Confidence 4677889999999999999999999 59999998 588 89999999887643
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.52 E-value=0.00013 Score=58.87 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=41.2
Q ss_pred cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHH
Q 019307 67 RGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 110 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~ 110 (343)
...||+||..+..+.+..||.+|..|+..||+||..+|-.+|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 45899999999999999999999999999999999999998864
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.48 E-value=0.0002 Score=54.74 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=40.4
Q ss_pred cCCCChHHHHHHHHHHHHhCCcHHHHHh-hCCCCChHHHHHHHH
Q 019307 67 RGNFTDHEEKMIIHLQALLGNRWAAIAS-YLPQRTDNDIKNYWN 109 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~-~LpgRT~~qcKnRW~ 109 (343)
...||+||-.+..+.+.+||.+|..|++ .||+||..+|..+|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4589999999999999999999999999 599999999999886
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.39 E-value=5.9e-05 Score=76.60 Aligned_cols=49 Identities=20% Similarity=0.397 Sum_probs=44.4
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcc
Q 019307 11 GVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 (343)
Q Consensus 11 ~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L 61 (343)
.....+||.||-+++++++.+|| ++|..|+..++ .|+..||+.+|.++-
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34568999999999999999999 69999999999 999999999998753
No 82
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.20 E-value=0.00025 Score=55.50 Aligned_cols=53 Identities=21% Similarity=0.446 Sum_probs=42.4
Q ss_pred cCCCChHHHHHHHHHHHHhC----------CcHHHHHhhCC----CCChHHHHHHHHHHhHHHHhhhc
Q 019307 67 RGNFTDHEEKMIIHLQALLG----------NRWAAIASYLP----QRTDNDIKNYWNTHLKKKLKKLQ 120 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G----------nkWs~IA~~Lp----gRT~~qcKnRW~~~Lkkklkk~q 120 (343)
...||.+|-..||+++..+. ..|..||..|. .||+.||+++|.++.+. +++..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~-Yk~~k 70 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE-FKKAK 70 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HCSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHHHH
Confidence 46899999999999997632 14999999873 79999999999986655 55443
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.11 E-value=0.0002 Score=58.01 Aligned_cols=50 Identities=12% Similarity=0.160 Sum_probs=43.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCceecccCC----CCCChhhhhhhhhhccc
Q 019307 12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG----LLRCSKSCRLRWTNYLR 62 (343)
Q Consensus 12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~----~~Rt~kQCR~RW~n~L~ 62 (343)
++..+||.||++.|++++++|+ ..|..|+..+. .+|+..+++.||..+.+
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 4458999999999999999999 59999998883 27999999999987543
No 84
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.96 E-value=0.0021 Score=57.44 Aligned_cols=102 Identities=9% Similarity=0.062 Sum_probs=68.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhC--CCCCceeccc--CCCCCChhhhhhhhh-------h---------------------
Q 019307 12 VKKGPWTPEEDIILVSYIQEHG--PGNWRSVPTN--TGLLRCSKSCRLRWT-------N--------------------- 59 (343)
Q Consensus 12 ikKG~WT~EEDe~L~~lV~~~G--~~nW~~IA~~--l~~~Rt~kQCR~RW~-------n--------------------- 59 (343)
-....||..|-..|+.++.+|| ...|..|+.. +. +++...+..-+. .
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~ 83 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG 83 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------C
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 3457899999999999999999 5689999754 33 455533322000 0
Q ss_pred -----------------------ccc--------------------CCCccCCCChHHHHHHHHHHHHhC-CcHHHHHh-
Q 019307 60 -----------------------YLR--------------------PGIKRGNFTDHEEKMIIHLQALLG-NRWAAIAS- 94 (343)
Q Consensus 60 -----------------------~L~--------------------P~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~- 94 (343)
.|+ +......||.+||..||..+.+|| ++|..|-.
T Consensus 84 ~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 84 PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp CEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred hhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 000 001123599999999999999999 89999965
Q ss_pred -hC------------CCCChHHHHHHHHHHhHH
Q 019307 95 -YL------------PQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 95 -~L------------pgRT~~qcKnRW~~~Lkk 114 (343)
.| ..++..++..|..++|+-
T Consensus 164 ~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 164 PDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred hhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 11 124566899998877763
No 85
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.89 E-value=0.00043 Score=55.80 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=40.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhh
Q 019307 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTN 59 (343)
Q Consensus 14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n 59 (343)
...||+||.+++.+.+..|| .+|..|+..++ +|+..+|.+.|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhc
Confidence 46899999999999999999 59999999999 9999999998754
No 86
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.87 E-value=0.003 Score=62.31 Aligned_cols=105 Identities=13% Similarity=0.238 Sum_probs=79.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcc-------c-------------------------
Q 019307 15 GPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL-------R------------------------- 62 (343)
Q Consensus 15 G~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L-------~------------------------- 62 (343)
+.||.-+=..++.++.+||..+-..||..|+.+++...++. |.+.+ .
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999998889999999853567655542 21110 0
Q ss_pred -------------------CCC--ccCCCChHHHHHHHHHHHHhC----CcHHHHHhh------------CCCCChHHHH
Q 019307 63 -------------------PGI--KRGNFTDHEEKMIIHLQALLG----NRWAAIASY------------LPQRTDNDIK 105 (343)
Q Consensus 63 -------------------P~i--krg~WT~EED~~Ll~lv~~~G----nkWs~IA~~------------LpgRT~~qcK 105 (343)
+.. +...||++||..||-++.+|| +.|..|-.. +..||+.+|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 111 345799999999999999999 469999432 3579999999
Q ss_pred HHHHHHhHHHHhhhc
Q 019307 106 NYWNTHLKKKLKKLQ 120 (343)
Q Consensus 106 nRW~~~Lkkklkk~q 120 (343)
.|.+.+++--.+...
T Consensus 283 rRc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 283 RRGNTLLQCLEKEFN 297 (374)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999977544443
No 87
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.82 E-value=0.00058 Score=52.13 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=40.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCceecc-cCCCCCChhhhhhhhhh
Q 019307 13 KKGPWTPEEDIILVSYIQEHGPGNWRSVPT-NTGLLRCSKSCRLRWTN 59 (343)
Q Consensus 13 kKG~WT~EEDe~L~~lV~~~G~~nW~~IA~-~l~~~Rt~kQCR~RW~n 59 (343)
....||+||-++..+++..|| .+|..|++ .++ +|+..+|...|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 456899999999999999999 59999999 588 9999999988764
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.47 E-value=0.00026 Score=55.40 Aligned_cols=49 Identities=20% Similarity=0.547 Sum_probs=39.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CCCceecccC---CCCCChhhhhhhhhhcc
Q 019307 13 KKGPWTPEEDIILVSYIQEHGP---------GNWRSVPTNT---GLLRCSKSCRLRWTNYL 61 (343)
Q Consensus 13 kKG~WT~EEDe~L~~lV~~~G~---------~nW~~IA~~l---~~~Rt~kQCR~RW~n~L 61 (343)
+...||.+|-..|++++..+.. ..|..||..| |..|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999976421 1599999775 35799999999998854
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.10 E-value=0.0022 Score=51.73 Aligned_cols=45 Identities=20% Similarity=0.404 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCCceecccCCCCCChhhhhhhhhhc
Q 019307 15 GPWTPEEDIILVSYIQEHGP--GNWRSVPTNTGLLRCSKSCRLRWTNY 60 (343)
Q Consensus 15 G~WT~EEDe~L~~lV~~~G~--~nW~~IA~~l~~~Rt~kQCR~RW~n~ 60 (343)
--||.|||..|+...++.|. ..|..||+.|+ +|++.|+.+||+..
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 47999999999999999985 37999999998 89999999999873
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.02 E-value=0.0011 Score=50.88 Aligned_cols=45 Identities=16% Similarity=0.347 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCC--CCceecccCCCCCChhhhhhhhhhcc
Q 019307 15 GPWTPEEDIILVSYIQEHGPG--NWRSVPTNTGLLRCSKSCRLRWTNYL 61 (343)
Q Consensus 15 G~WT~EEDe~L~~lV~~~G~~--nW~~IA~~l~~~Rt~kQCR~RW~n~L 61 (343)
-.||.|||..|+..+++.|.. .|..||..+ +|++.|+.+||+..+
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLM 61 (70)
Confidence 479999999999999999863 799999988 499999999998755
No 91
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.09 E-value=0.035 Score=49.44 Aligned_cols=38 Identities=32% Similarity=0.522 Sum_probs=31.6
Q ss_pred CccCCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecc
Q 019307 5 PCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPT 42 (343)
Q Consensus 5 pccdK~~ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~ 42 (343)
|++.++.-....||.+||..|+..|.+||.++|..|-.
T Consensus 125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 45555555566899999999999999999999998865
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.45 E-value=0.2 Score=37.76 Aligned_cols=48 Identities=13% Similarity=0.071 Sum_probs=40.9
Q ss_pred CccCCCChHHHHHHHHHHHHhCCc---HHHHHhhC--CCCChHHHHHHHHHHh
Q 019307 65 IKRGNFTDHEEKMIIHLQALLGNR---WAAIASYL--PQRTDNDIKNYWNTHL 112 (343)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~Gnk---Ws~IA~~L--pgRT~~qcKnRW~~~L 112 (343)
..+-.||+|..+..++++.++|.. +..|-+.| +|.|..+|+.|...+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 346689999999999999999954 78998886 6899999999877653
No 93
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.22 E-value=0.044 Score=44.27 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=41.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCceecccCC----CCCChhhhhhhhhhcc
Q 019307 12 VKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG----LLRCSKSCRLRWTNYL 61 (343)
Q Consensus 12 ikKG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~----~~Rt~kQCR~RW~n~L 61 (343)
++...||.||...|++++++|. -.|..|+.... ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 4457899999999999999999 59998887653 2699999999998764
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.01 E-value=0.13 Score=49.35 Aligned_cols=48 Identities=15% Similarity=0.206 Sum_probs=42.8
Q ss_pred cCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 67 RGNFTDHEEKMIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.+.||..+...++.++.+||. +|..||..|+|+|..+|+.++.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 457999999999999999994 799999999999999998887776654
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=87.92 E-value=0.3 Score=36.75 Aligned_cols=50 Identities=8% Similarity=0.069 Sum_probs=37.5
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCC--CCceecccCCC-CCChhhhhhhhhhc
Q 019307 11 GVKKGPWTPEEDIILVSYIQEHGPG--NWRSVPTNTGL-LRCSKSCRLRWTNY 60 (343)
Q Consensus 11 ~ikKG~WT~EEDe~L~~lV~~~G~~--nW~~IA~~l~~-~Rt~kQCR~RW~n~ 60 (343)
...+-.||+|..++.+++|...|.. .++.|.+.|+. +.+..++.-|.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999942 15677776653 56777777766554
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.26 E-value=0.41 Score=45.22 Aligned_cols=28 Identities=32% Similarity=0.591 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceecc
Q 019307 15 GPWTPEEDIILVSYIQEHGPGNWRSVPT 42 (343)
Q Consensus 15 G~WT~EEDe~L~~lV~~~G~~nW~~IA~ 42 (343)
..|+.+||..|+..|.+||.++|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 5699999999999999999999999964
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=73.39 E-value=6.6 Score=36.96 Aligned_cols=48 Identities=10% Similarity=0.223 Sum_probs=41.6
Q ss_pred cCCCChHHHHHHHHHHHHhC---CcHHHHHh--hCCCCChHHHHHHHHHHhHH
Q 019307 67 RGNFTDHEEKMIIHLQALLG---NRWAAIAS--YLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G---nkWs~IA~--~LpgRT~~qcKnRW~~~Lkk 114 (343)
+++||+-|-..|++.+.+|| .+|..|+. .|+.|+...++.-++.++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 58999976 47899999999888866653
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=65.78 E-value=11 Score=26.30 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 73 HEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 73 EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
+.+..++.++-..|-.+.+||..| |-+...|+.+....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455566667667788999999999 88999999887765554
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=61.40 E-value=15 Score=26.49 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHH----hCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 73 HEEKMIIHLQAL----LGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 73 EED~~Ll~lv~~----~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
+.+..++.+.-. .|..|.+||..| |-+...|+.+....+++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 445555656554 577899999999 89999999987766544
No 100
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=58.68 E-value=59 Score=25.40 Aligned_cols=88 Identities=11% Similarity=0.046 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccC------CCccCCCChHHHHHHHHHHHHhCCc
Q 019307 15 GPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP------GIKRGNFTDHEEKMIIHLQALLGNR 88 (343)
Q Consensus 15 G~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P------~ikrg~WT~EED~~Ll~lv~~~Gnk 88 (343)
...|.++-..++.++. .| ..-.+||..++ .+...+ .||.+.... .......+++++..|+.+...-.-.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G-~s~~~ia~~lg--is~~Tv-~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LN-VSLHEMSRKIS--RSRHCI-RVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHH-HHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHH-HHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 3578888888877773 45 36789999987 444333 344332211 1122357888888888873332234
Q ss_pred HHHHHhhCCC-CChHHHHHH
Q 019307 89 WAAIASYLPQ-RTDNDIKNY 107 (343)
Q Consensus 89 Ws~IA~~Lpg-RT~~qcKnR 107 (343)
=.+|+..|.- -+...|...
T Consensus 80 ~~~i~~~lg~~~s~~tV~r~ 99 (141)
T 1u78_A 80 ARDIRNELQLSASKRTILNV 99 (141)
T ss_dssp HHHHHHHTTCCSCHHHHHHH
T ss_pred HHHHHHHHCCCccHHHHHHH
Confidence 5788888821 455555543
No 101
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=56.27 E-value=12 Score=30.36 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=29.6
Q ss_pred HHHHHHHhC--------CcHHHHHhhCCCCChHHHHHHHHHHhHHH
Q 019307 78 IIHLQALLG--------NRWAAIASYLPQRTDNDIKNYWNTHLKKK 115 (343)
Q Consensus 78 Ll~lv~~~G--------nkWs~IA~~LpgRT~~qcKnRW~~~Lkkk 115 (343)
|..+|...| +.|..|+..|.--....+|..|..+|-+-
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 666667666 46999999985444889999999988773
No 102
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=55.88 E-value=4.1 Score=33.89 Aligned_cols=45 Identities=9% Similarity=0.184 Sum_probs=32.7
Q ss_pred CCceecccCCCCCC----hhhhhhhhhhcccCCCccCCCChHHHHHHHHHHH
Q 019307 36 NWRSVPTNTGLLRC----SKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQA 83 (343)
Q Consensus 36 nW~~IA~~l~~~Rt----~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~ 83 (343)
.|..|+..|+...+ ....+..|.++|.|- ..++++|-..|.+-|.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 69999999985442 246788899988653 3478888888876554
No 103
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=55.43 E-value=16 Score=25.96 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=30.2
Q ss_pred HHHHHHHHHHH----HhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 73 HEEKMIIHLQA----LLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 73 EED~~Ll~lv~----~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
+.+..++.+.- ..|..+.+||..| |-+...|+.+....+++
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34445555554 3477899999999 99999999987766544
No 104
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=53.25 E-value=19 Score=35.44 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=39.5
Q ss_pred cCCCChHHHHHHHHHHHHhCC-cHHHHHhhCC-CCChHHHHHHHHHHhH
Q 019307 67 RGNFTDHEEKMIIHLQALLGN-RWAAIASYLP-QRTDNDIKNYWNTHLK 113 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~Lp-gRT~~qcKnRW~~~Lk 113 (343)
.+.|+.-|=..++.++.+||. +-..||..|. ++|..+|+.+......
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~ 171 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWS 171 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 347999999999999999995 6999999997 9999999966555443
No 105
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=53.24 E-value=23 Score=29.18 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=32.0
Q ss_pred HHHHHHHhC--------CcHHHHHhhCCCCChHHHHHHHHHHhHHHHhhhcCCCCC
Q 019307 78 IIHLQALLG--------NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDG 125 (343)
Q Consensus 78 Ll~lv~~~G--------nkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk~q~~~~~ 125 (343)
|..+|.+.| +.|.+|+..|.--....+|..|..+|-+-- +...+.++
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE-~~~~~~~g 107 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE-RHMISQEG 107 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH-HHSCTTCC
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHH-HHHhCccc
Confidence 445555555 359999998844448999999999998843 34444433
No 106
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=52.43 E-value=26 Score=27.70 Aligned_cols=38 Identities=16% Similarity=0.310 Sum_probs=27.5
Q ss_pred HHHHHHHhC--------CcHHHHHhhCCCCC----hHHHHHHHHHHhHHH
Q 019307 78 IIHLQALLG--------NRWAAIASYLPQRT----DNDIKNYWNTHLKKK 115 (343)
Q Consensus 78 Ll~lv~~~G--------nkWs~IA~~LpgRT----~~qcKnRW~~~Lkkk 115 (343)
|..+|.+.| +.|.+|+..|.--. ...+|..|..+|-+-
T Consensus 49 Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 49 LHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 555566666 46999999994322 468899999888763
No 107
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=50.60 E-value=30 Score=25.97 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 73 HEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 73 EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
+.++.++.++-..|-.-.+||..| |.+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455566667667788899999999 89999999988776554
No 108
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=49.49 E-value=3.5 Score=33.65 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=30.2
Q ss_pred HHHHHHHHhCC-------CCCceecccCCCCCChhhhhhhhhhcccC
Q 019307 24 ILVSYIQEHGP-------GNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63 (343)
Q Consensus 24 ~L~~lV~~~G~-------~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P 63 (343)
+|..+|.+.|. +.|..|+..|+... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 57777887773 37999999998544 77888889888864
No 109
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=48.95 E-value=24 Score=28.70 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=27.8
Q ss_pred HHHHHHHhC--------CcHHHHHhhCCCCC----hHHHHHHHHHHhHH
Q 019307 78 IIHLQALLG--------NRWAAIASYLPQRT----DNDIKNYWNTHLKK 114 (343)
Q Consensus 78 Ll~lv~~~G--------nkWs~IA~~LpgRT----~~qcKnRW~~~Lkk 114 (343)
|..+|...| +.|.+|+..|.--. ...+|..|..+|-+
T Consensus 45 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 45 LSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 666677776 46999999983222 56889999988876
No 110
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=46.36 E-value=5.4 Score=32.61 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=29.3
Q ss_pred HHHHHHHHhCC-------CCCceecccCCCCCC---hhhhhhhhhhcccC
Q 019307 24 ILVSYIQEHGP-------GNWRSVPTNTGLLRC---SKSCRLRWTNYLRP 63 (343)
Q Consensus 24 ~L~~lV~~~G~-------~nW~~IA~~l~~~Rt---~kQCR~RW~n~L~P 63 (343)
+|..+|.+.|. +.|..|+..|+...+ ....+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57788888873 379999999985432 45677788888754
No 111
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=46.28 E-value=5.2 Score=33.09 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=29.7
Q ss_pred HHHHHHHHhCC-------CCCceecccCCCCCC----hhhhhhhhhhcccC
Q 019307 24 ILVSYIQEHGP-------GNWRSVPTNTGLLRC----SKSCRLRWTNYLRP 63 (343)
Q Consensus 24 ~L~~lV~~~G~-------~nW~~IA~~l~~~Rt----~kQCR~RW~n~L~P 63 (343)
+|..+|.+.|. +.|..|+..|+...+ ....+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777888773 379999999985443 45678888888865
No 112
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=46.28 E-value=52 Score=26.89 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=31.3
Q ss_pred HHHHHHHhC--------CcHHHHHhhCCCCC----hHHHHHHHHHHhHHHHhhhcCC
Q 019307 78 IIHLQALLG--------NRWAAIASYLPQRT----DNDIKNYWNTHLKKKLKKLQTG 122 (343)
Q Consensus 78 Ll~lv~~~G--------nkWs~IA~~LpgRT----~~qcKnRW~~~Lkkklkk~q~~ 122 (343)
|..+|...| +.|.+|+..|.--+ ...+|..|..+|-+--.....+
T Consensus 56 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~g 112 (125)
T 2cxy_A 56 LYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERG 112 (125)
T ss_dssp HHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHcC
Confidence 556666666 47999999984322 4689999999998854443333
No 113
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=44.98 E-value=5.6 Score=32.83 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=28.5
Q ss_pred HHHHHHHHhCC-------CCCceecccCCCCCC---hhhhhhhhhhcccC
Q 019307 24 ILVSYIQEHGP-------GNWRSVPTNTGLLRC---SKSCRLRWTNYLRP 63 (343)
Q Consensus 24 ~L~~lV~~~G~-------~nW~~IA~~l~~~Rt---~kQCR~RW~n~L~P 63 (343)
+|..+|.+.|. +.|.+|+..|+...+ ...++..|.++|.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777777763 379999999985543 35677778877753
No 114
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=44.91 E-value=31 Score=28.24 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=27.6
Q ss_pred HHHHHHHhC--------CcHHHHHhhCCCCC----hHHHHHHHHHHhHHH
Q 019307 78 IIHLQALLG--------NRWAAIASYLPQRT----DNDIKNYWNTHLKKK 115 (343)
Q Consensus 78 Ll~lv~~~G--------nkWs~IA~~LpgRT----~~qcKnRW~~~Lkkk 115 (343)
|..+|.+.| +.|.+|+..|.--. ...+|..|..+|-+-
T Consensus 47 Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 47 LNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 556666666 46999999983221 468899999988773
No 115
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.68 E-value=50 Score=23.50 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 70 FTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 70 WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
+++.|-+ ++.++ ..|..-.+||..| |-+...|+.+....+++
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4555544 44555 6678899999999 88999999877665443
No 116
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=42.44 E-value=57 Score=26.79 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=24.8
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|-...+||..| |-+...|+.+....+++
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467899999999 89999999988876655
No 117
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=41.44 E-value=5.6 Score=31.79 Aligned_cols=40 Identities=15% Similarity=0.295 Sum_probs=29.1
Q ss_pred HHHHHHHHhCC-------CCCceecccCCCCCC----hhhhhhhhhhcccC
Q 019307 24 ILVSYIQEHGP-------GNWRSVPTNTGLLRC----SKSCRLRWTNYLRP 63 (343)
Q Consensus 24 ~L~~lV~~~G~-------~nW~~IA~~l~~~Rt----~kQCR~RW~n~L~P 63 (343)
+|..+|.+.|. +.|..|+..|+...+ ..+.+..|.++|.|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777777763 379999999885432 35778888888865
No 118
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=40.34 E-value=6.7 Score=31.23 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCC-------CCCceecccCCCCCC---hhhhhhhhhhcccC
Q 019307 23 IILVSYIQEHGP-------GNWRSVPTNTGLLRC---SKSCRLRWTNYLRP 63 (343)
Q Consensus 23 e~L~~lV~~~G~-------~nW~~IA~~l~~~Rt---~kQCR~RW~n~L~P 63 (343)
-+|..+|.+.|. +.|..|+..|+...+ ..+.+..|.++|.|
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 357777877773 379999999985443 35667778777653
No 119
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.35 E-value=7.4 Score=32.03 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=28.0
Q ss_pred HHHHHHHHhCC-------CCCceecccCCCCCC---hhhhhhhhhhcccC
Q 019307 24 ILVSYIQEHGP-------GNWRSVPTNTGLLRC---SKSCRLRWTNYLRP 63 (343)
Q Consensus 24 ~L~~lV~~~G~-------~nW~~IA~~l~~~Rt---~kQCR~RW~n~L~P 63 (343)
+|..+|.+.|. +.|..|+..|+...+ ....+..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 57778888873 379999999985443 24667777777653
No 120
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=38.88 E-value=52 Score=24.48 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHH----hCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 73 HEEKMIIHLQAL----LGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 73 EED~~Ll~lv~~----~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
+.+..++.+.-. .|-.+.+||..| |-+...|+.+-...+++
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344555555554 567899999999 89999999876665544
No 121
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=37.48 E-value=17 Score=30.69 Aligned_cols=40 Identities=25% Similarity=0.507 Sum_probs=29.1
Q ss_pred HHHHHHHHhCC-------CCCceecccCCCCCC----hhhhhhhhhhcccC
Q 019307 24 ILVSYIQEHGP-------GNWRSVPTNTGLLRC----SKSCRLRWTNYLRP 63 (343)
Q Consensus 24 ~L~~lV~~~G~-------~nW~~IA~~l~~~Rt----~kQCR~RW~n~L~P 63 (343)
+|..+|.+.|. +.|..|+..|+...+ ...++..|.++|.|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 46667777763 379999999985432 45778888888876
No 122
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=37.23 E-value=28 Score=29.05 Aligned_cols=45 Identities=7% Similarity=-0.037 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHHHHhh
Q 019307 73 HEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 118 (343)
Q Consensus 73 EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkkklkk 118 (343)
+-|..|+++.++.| -.|.+||+.+ |-+...|+.|++.+.+..+-+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 56788888888776 4799999999 999999999999888776543
No 123
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=37.20 E-value=60 Score=24.67 Aligned_cols=43 Identities=28% Similarity=0.318 Sum_probs=31.9
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 69 NFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 69 ~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|+.|-+.|. ++ ..|..-.+||..| |-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666655544 45 7788899999999 88999999887665443
No 124
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=37.07 E-value=49 Score=27.09 Aligned_cols=40 Identities=15% Similarity=0.158 Sum_probs=29.6
Q ss_pred HHHHHHHHhC--------CcHHHHHhhCC--CC---ChHHHHHHHHHHhHHHH
Q 019307 77 MIIHLQALLG--------NRWAAIASYLP--QR---TDNDIKNYWNTHLKKKL 116 (343)
Q Consensus 77 ~Ll~lv~~~G--------nkWs~IA~~Lp--gR---T~~qcKnRW~~~Lkkkl 116 (343)
.|..+|...| +.|.+|+..|. .. ....+|..|..+|-+--
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE 108 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYE 108 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3666777777 46999999983 22 25789999999998743
No 125
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=36.98 E-value=20 Score=27.84 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=25.6
Q ss_pred HHHHHHHhC--------CcHHHHHhhCCCC----ChHHHHHHHHHHhHH
Q 019307 78 IIHLQALLG--------NRWAAIASYLPQR----TDNDIKNYWNTHLKK 114 (343)
Q Consensus 78 Ll~lv~~~G--------nkWs~IA~~LpgR----T~~qcKnRW~~~Lkk 114 (343)
|..+|...| +.|.+|+..|.-- ...++|..|..+|-+
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 555566555 4799999988321 256888888877765
No 126
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=36.83 E-value=34 Score=27.10 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=26.8
Q ss_pred HHHHHHHhC--------CcHHHHHhhCC--CC---ChHHHHHHHHHHhHH
Q 019307 78 IIHLQALLG--------NRWAAIASYLP--QR---TDNDIKNYWNTHLKK 114 (343)
Q Consensus 78 Ll~lv~~~G--------nkWs~IA~~Lp--gR---T~~qcKnRW~~~Lkk 114 (343)
|..+|...| +.|.+|+..|. .. ...++|..|..+|-+
T Consensus 38 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 38 MFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 555666666 47999999883 21 246899999998876
No 127
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=36.01 E-value=62 Score=22.49 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=31.7
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 69 NFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 69 ~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.+++.|-+.|. ++ ..|..-.+||..| |-+...|+.+....+++
T Consensus 11 ~L~~~e~~il~-~~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 11 LLTKREREVFE-LL-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HH-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 46666665554 44 5677899999999 88999999887665443
No 128
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=35.54 E-value=60 Score=23.96 Aligned_cols=43 Identities=28% Similarity=0.271 Sum_probs=31.7
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 69 NFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 69 ~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|+.|-+.| .++ ..|..-.+||..| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDIL-KLI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHH-HHH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4666665554 444 6788899999999 88999999877655443
No 129
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=35.03 E-value=48 Score=27.91 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=28.3
Q ss_pred HHHHHHHhC--------CcHHHHHhhCC--CC---ChHHHHHHHHHHhHHH
Q 019307 78 IIHLQALLG--------NRWAAIASYLP--QR---TDNDIKNYWNTHLKKK 115 (343)
Q Consensus 78 Ll~lv~~~G--------nkWs~IA~~Lp--gR---T~~qcKnRW~~~Lkkk 115 (343)
|..+|...| +.|.+|+..|. .. ....+|..|..+|-+-
T Consensus 69 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 69 LYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 566666666 46999999983 22 2568999999998874
No 130
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=34.99 E-value=23 Score=31.19 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=18.9
Q ss_pred CCCccCCCCHHHHHHHH--------HHHHHhC
Q 019307 10 IGVKKGPWTPEEDIILV--------SYIQEHG 33 (343)
Q Consensus 10 ~~ikKG~WT~EEDe~L~--------~lV~~~G 33 (343)
|.-..|-||+|.|+.|. +++++||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 34568999999999876 4777887
No 131
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=34.99 E-value=77 Score=24.07 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=33.9
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 66 KRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.....|+.|-+.|.-++ .|..-.+||..| +-+...|+.+...++++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34467877776665444 788899999999 89999999987776544
No 132
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=33.90 E-value=49 Score=27.23 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=50.0
Q ss_pred CCccCCCCHHHH--HHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHHHHHHhC--
Q 019307 11 GVKKGPWTPEED--IILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLG-- 86 (343)
Q Consensus 11 ~ikKG~WT~EED--e~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~lv~~~G-- 86 (343)
+.=+.+|.+.+. +.|.+..+..|. ....|+.. + +|.- .+ -.|..+|.+.|
T Consensus 4 ~~~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~i-~-gk~l-DL----------------------~~Ly~~V~~~GG~ 57 (121)
T 2rq5_A 4 GSLGRRWGPNVQRLACIKKHLRSQGI-TMDELPLI-G-GCEL-DL----------------------ACFFRLINEMGGM 57 (121)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCEE-T-TEEC-CH----------------------HHHHHHHHHTTSH
T ss_pred HHhhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCcC-C-CEec-cH----------------------HHHHHHHHHcCcH
Confidence 344678988876 567777788884 45444432 2 2211 11 12666677777
Q ss_pred ------CcHHHHHhhC--CCC---ChHHHHHHHHHHhHHH
Q 019307 87 ------NRWAAIASYL--PQR---TDNDIKNYWNTHLKKK 115 (343)
Q Consensus 87 ------nkWs~IA~~L--pgR---T~~qcKnRW~~~Lkkk 115 (343)
+.|.+|+..| |.- ....+|.+|..+|-+-
T Consensus 58 ~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 58 QQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred HHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 4699999998 321 2467899998888763
No 133
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=32.95 E-value=63 Score=25.63 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHH
Q 019307 71 TDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKN 106 (343)
Q Consensus 71 T~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKn 106 (343)
++.-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56667788888899999999999999 777766544
No 134
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=32.47 E-value=87 Score=26.38 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 77 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 77 ~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
.++.+.-..|-...+||..| |-+...|+.+....+++
T Consensus 194 ~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 194 LVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 33444444577899999999 89999999887765554
No 135
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=31.24 E-value=79 Score=24.81 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=24.9
Q ss_pred HHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 83 ALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 83 ~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
...|-...+||..| |-+...|+.+....+++
T Consensus 121 ~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 121 LIRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp HTTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34567899999999 88999999988766554
No 136
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=30.99 E-value=2.1e+02 Score=23.09 Aligned_cols=78 Identities=14% Similarity=0.041 Sum_probs=47.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcc------cCCCc----cCCCChHHHHHHHHHHH
Q 019307 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL------RPGIK----RGNFTDHEEKMIIHLQA 83 (343)
Q Consensus 14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L------~P~ik----rg~WT~EED~~Ll~lv~ 83 (343)
..+.|.++-..++.++. .| ....+||+.+++ +.. ...||.+.. .+... ....++++...|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lgi--s~~-TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QG-VRPCDISRQLRV--SHG-CVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HT-CCHHHHHHHHTC--CSH-HHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCc--CHH-HHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34788998888888884 56 477899999873 333 333444322 22211 23578888888888887
Q ss_pred HhC-CcHHHHHhhC
Q 019307 84 LLG-NRWAAIASYL 96 (343)
Q Consensus 84 ~~G-nkWs~IA~~L 96 (343)
+.. -.-.+|+..|
T Consensus 98 ~~~~~s~~~i~~~l 111 (159)
T 2k27_A 98 QNPTMFAWEIRDRL 111 (159)
T ss_dssp HCSSSCHHHHHHHH
T ss_pred HCccchHHHHHHHH
Confidence 653 2234555544
No 137
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=30.89 E-value=90 Score=20.98 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 75 EKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 75 D~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
+..++.+ ...|-.-.+||..| |-+...|+.+....+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4456666 35677889999999 88999999887765544
No 138
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=30.42 E-value=35 Score=30.01 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=19.6
Q ss_pred hhhhhhhhccc-CCCccCCCChHHHHHHH
Q 019307 52 SCRLRWTNYLR-PGIKRGNFTDHEEKMII 79 (343)
Q Consensus 52 QCR~RW~n~L~-P~ikrg~WT~EED~~Ll 79 (343)
.+-+.|..-.. |...+|-||.++|+.|.
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 34444444333 56788999999999987
No 139
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=30.30 E-value=36 Score=27.90 Aligned_cols=30 Identities=13% Similarity=-0.013 Sum_probs=23.8
Q ss_pred HhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 84 LLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|-...+||..| |-+...|+.+....+++
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3466788999999 88999999988776654
No 140
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=29.95 E-value=1e+02 Score=24.39 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 73 HEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 73 EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
+.+..++.++-..|-...+||..| |-+...|+.+....+++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 344556667667788999999999 88999999887765544
No 141
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=29.88 E-value=86 Score=25.29 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHHHHh
Q 019307 73 HEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLK 117 (343)
Q Consensus 73 EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkkklk 117 (343)
+-|..|+.+....| -.+.+||+.+ |-+...|+.|.+.+.+..+-
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 45667777777766 5799999999 88999999999988777654
No 142
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=29.39 E-value=5.3 Score=33.11 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=22.9
Q ss_pred HHHHHHHHhCC-------CCCceecccCCCCCChhhhhhhhhhcccC
Q 019307 24 ILVSYIQEHGP-------GNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63 (343)
Q Consensus 24 ~L~~lV~~~G~-------~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P 63 (343)
+|..+|.+.|. +.|..|+..|+... ....+..|.++|.|
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCCh-HHHHHHHHHHHHHH
Confidence 35555555542 24777777776433 56666666666643
No 143
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=28.50 E-value=1.5e+02 Score=23.59 Aligned_cols=78 Identities=13% Similarity=0.053 Sum_probs=48.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhc------ccCCCc----cCCCChHHHHHHHHHHH
Q 019307 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY------LRPGIK----RGNFTDHEEKMIIHLQA 83 (343)
Q Consensus 14 KG~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~------L~P~ik----rg~WT~EED~~Ll~lv~ 83 (343)
..+.+.|+-..++.++. .| ....+||..++ .+.. ...||.+. +.+... ....++++...|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lg--is~~-TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QG-VRPCDISRQLR--VSHG-CVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHH-HHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHH-HHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 45789999888888884 45 46789999988 3333 33344332 222211 23578888888888887
Q ss_pred HhCC-cHHHHHhhC
Q 019307 84 LLGN-RWAAIASYL 96 (343)
Q Consensus 84 ~~Gn-kWs~IA~~L 96 (343)
+.+. .-.+|+..|
T Consensus 105 ~~~~~s~~~i~~~l 118 (149)
T 1k78_A 105 QNPTMFAWEIRDRL 118 (149)
T ss_dssp HCTTCCHHHHHHHH
T ss_pred hCcchhHHHHHHHH
Confidence 6532 234555544
No 144
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=27.78 E-value=85 Score=22.08 Aligned_cols=30 Identities=10% Similarity=-0.066 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHhCCcHHHHHhhCCCCChH
Q 019307 72 DHEEKMIIHLQALLGNRWAAIASYLPQRTDN 102 (343)
Q Consensus 72 ~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~ 102 (343)
.-|...|.++...+++++.+.|+.| |=+..
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~ 47 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLS 47 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHH
Confidence 3577888899999999999999998 44443
No 145
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=26.77 E-value=75 Score=23.66 Aligned_cols=43 Identities=26% Similarity=0.216 Sum_probs=31.6
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 69 NFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 69 ~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
..|+.|-+.|. ++ ..|..-.+||..| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666665554 44 5688889999999 88999999887655443
No 146
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=26.48 E-value=76 Score=25.71 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCcHHHHHhhCCCCChHHHHH
Q 019307 77 MIIHLQALLGNRWAAIASYLPQRTDNDIKN 106 (343)
Q Consensus 77 ~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKn 106 (343)
.|..++...|..|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666888999999999999 666655543
No 147
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=26.34 E-value=6.3 Score=25.70 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=13.2
Q ss_pred cCchhhHHHHHhhhh
Q 019307 201 ASNAENISRLLQNWM 215 (343)
Q Consensus 201 ass~~ni~~~l~~w~ 215 (343)
|.+.+|+++|..||+
T Consensus 16 At~~~NL~~my~GW~ 30 (33)
T 1w1n_A 16 ATSIERLCQHYIGWC 30 (33)
T ss_dssp HHHHHHHHTTSCSCC
T ss_pred hcCHHHHHHHhhhcc
Confidence 567899999999997
No 148
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=26.16 E-value=69 Score=25.81 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCChHHHHH
Q 019307 75 EKMIIHLQALLGNRWAAIASYLPQRTDNDIKN 106 (343)
Q Consensus 75 D~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKn 106 (343)
|..|..+....|..|..+|..| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567788899999999999999 666665544
No 149
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=26.01 E-value=16 Score=30.54 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhCCCCCceecccCCCCCChhhhhhhhhhcccCCC
Q 019307 20 EEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGI 65 (343)
Q Consensus 20 EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~i 65 (343)
+-|.+|+.++++.+.-.|.+||+.++ -+...|+.|+.+....++
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 56889999999999889999999997 688889998877654443
No 150
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=25.82 E-value=1e+02 Score=23.29 Aligned_cols=35 Identities=9% Similarity=0.011 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHH
Q 019307 72 DHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNY 107 (343)
Q Consensus 72 ~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnR 107 (343)
.-|...|.+++..++++..+.|+.| |=+...++.|
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 4577888899999999999999999 6666555443
No 151
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=25.44 E-value=78 Score=26.73 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHHHH
Q 019307 72 DHEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKL 116 (343)
Q Consensus 72 ~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkkkl 116 (343)
.+-|..|+.+....| ..+.+||+.+ |-+...|+.|.+.+.+..+
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 70 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 455677888777766 4799999999 7899999999988776655
No 152
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=24.63 E-value=73 Score=25.79 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=26.4
Q ss_pred CCccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHH
Q 019307 64 GIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKN 106 (343)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKn 106 (343)
.+-...=|.+ .|..+....|..|..+|+.| |=+..+|..
T Consensus 16 ~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 16 HILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred hhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3333344444 46666788999999999999 666665543
No 153
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=24.38 E-value=35 Score=28.88 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=26.9
Q ss_pred ceecccCCCCCChhhhhhhhhhcccCCCccCCCChHHHHHHHH
Q 019307 38 RSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIH 80 (343)
Q Consensus 38 ~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikrg~WT~EED~~Ll~ 80 (343)
+.||..+. |+++.+||..+. |. ..||+||++.|.+
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I~-nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------IK-NDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------CC-CCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 57777776 899999999763 32 3699999988764
No 154
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=23.71 E-value=1.1e+02 Score=24.87 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhC-CcHHHHHhhCCCCChHHHHHHHHHHhHHHHh
Q 019307 73 HEEKMIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLK 117 (343)
Q Consensus 73 EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkkklk 117 (343)
+-|..|+.+....| -.+.+||+.+ |-+...|+.|.+.+.+..+-
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 51 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 44667777777766 4799999999 88999999999888777653
No 155
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=23.19 E-value=1e+02 Score=24.97 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 73 HEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 73 EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
+++..++.+....|-.-.+||..| |-+...|+.+....+++
T Consensus 96 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~ 136 (157)
T 2lfw_A 96 PLSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAE 136 (157)
T ss_dssp TTHHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 334455555555677899999999 89999999998776555
No 156
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=21.45 E-value=1.7e+02 Score=23.20 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 70 FTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 70 WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
+++. +..++.++-..|..-.+||..+ |-+...|+.+....+++
T Consensus 23 L~~~-~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 23 LTDK-QMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp SCHH-HHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4444 4556666667788999999999 89999999888765544
No 157
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.38 E-value=2.7e+02 Score=21.40 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=33.9
Q ss_pred cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHHHHhHH
Q 019307 67 RGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 114 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (343)
....|+.|-+.|. ++ ..|..-.+||..| +-+...|+.+....+++
T Consensus 32 ~~~Lt~re~~Vl~-l~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLR-LF-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHH-HH-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4568888777664 43 3688899999999 88999999877665444
No 158
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=20.21 E-value=2.3e+02 Score=22.42 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=31.9
Q ss_pred cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCChHHHHHHHH
Q 019307 67 RGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWN 109 (343)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~ 109 (343)
....+.++-..++.++. -|..-.+||+.| |.+...|+...+
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~rw~~ 70 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSKILG 70 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHHH
Confidence 34688898888888884 588889999999 777777765433
Done!