Query 019310
Match_columns 343
No_of_seqs 169 out of 765
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:25:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02405 hexokinase 100.0 1E-100 3E-105 775.0 34.0 331 1-331 1-336 (497)
2 PLN02596 hexokinase-like 100.0 2.9E-99 6E-104 763.8 34.1 330 1-332 2-337 (490)
3 PLN02362 hexokinase 100.0 2.1E-99 4E-104 768.5 32.8 327 1-327 1-332 (509)
4 PLN02914 hexokinase 100.0 6.3E-94 1.4E-98 724.9 29.5 295 36-331 36-335 (490)
5 PTZ00107 hexokinase; Provision 100.0 2.5E-86 5.3E-91 668.1 29.5 283 36-330 6-320 (464)
6 KOG1369 Hexokinase [Carbohydra 100.0 5.1E-86 1.1E-90 659.4 26.2 298 26-329 16-322 (474)
7 COG5026 Hexokinase [Carbohydra 100.0 9.4E-76 2E-80 573.1 24.3 285 33-322 13-301 (466)
8 PF00349 Hexokinase_1: Hexokin 100.0 3.3E-60 7.2E-65 433.9 21.9 202 36-242 2-206 (206)
9 PF03727 Hexokinase_2: Hexokin 99.9 1.8E-28 3.9E-33 229.7 6.6 85 244-331 1-92 (243)
10 PRK13311 N-acetyl-D-glucosamin 99.6 3.6E-15 7.9E-20 140.1 15.5 155 96-282 1-161 (256)
11 PRK13310 N-acetyl-D-glucosamin 99.6 4.1E-15 8.9E-20 142.6 15.3 155 97-283 2-162 (303)
12 PRK09698 D-allose kinase; Prov 99.6 8E-15 1.7E-19 140.4 15.1 164 94-283 3-169 (302)
13 COG1940 NagC Transcriptional r 99.6 1.3E-14 2.7E-19 139.8 15.9 165 93-286 4-175 (314)
14 TIGR00744 ROK_glcA_fam ROK fam 99.6 1.3E-14 2.9E-19 139.5 14.5 157 98-283 1-163 (318)
15 PRK09557 fructokinase; Reviewe 99.6 3.1E-14 6.7E-19 136.5 14.6 154 97-282 2-161 (301)
16 PF00480 ROK: ROK family; Int 99.6 2.2E-14 4.8E-19 126.7 10.3 154 99-284 1-158 (179)
17 PRK05082 N-acetylmannosamine k 99.5 1.1E-13 2.4E-18 132.0 14.7 153 97-283 3-161 (291)
18 PRK12408 glucokinase; Provisio 99.4 6.7E-13 1.5E-17 129.9 10.0 153 90-281 10-181 (336)
19 PRK00292 glk glucokinase; Prov 99.4 2.2E-12 4.8E-17 124.7 11.3 147 96-282 3-164 (316)
20 PRK14101 bifunctional glucokin 99.1 2.2E-10 4.7E-15 121.1 10.4 127 94-258 17-155 (638)
21 TIGR00749 glk glucokinase, pro 99.1 2.7E-10 5.9E-15 110.4 8.8 146 98-281 1-163 (316)
22 PTZ00288 glucokinase 1; Provis 98.8 3E-07 6.5E-12 92.5 16.7 184 59-282 5-222 (405)
23 smart00732 YqgFc Likely ribonu 98.7 4.7E-08 1E-12 78.2 6.8 98 96-237 2-99 (99)
24 PF02685 Glucokinase: Glucokin 97.9 1.9E-05 4.1E-10 77.1 5.6 178 98-321 1-193 (316)
25 PF01869 BcrAD_BadFG: BadF/Bad 97.6 0.0025 5.5E-08 60.2 15.0 137 98-288 1-137 (271)
26 TIGR02707 butyr_kinase butyrat 97.4 0.0011 2.4E-08 65.7 11.1 165 97-279 2-209 (351)
27 PRK13318 pantothenate kinase; 97.4 0.00019 4.1E-09 67.9 4.4 193 97-332 2-206 (258)
28 PF00370 FGGY_N: FGGY family o 97.3 0.00093 2E-08 62.1 8.7 93 96-195 1-100 (245)
29 KOG1794 N-Acetylglucosamine ki 97.2 0.012 2.6E-07 56.8 14.9 143 94-268 2-144 (336)
30 TIGR01312 XylB D-xylulose kina 97.1 0.0021 4.5E-08 65.5 9.0 80 98-184 1-87 (481)
31 COG0837 Glk Glucokinase [Carbo 96.7 0.019 4.1E-07 55.6 11.4 183 95-327 6-208 (320)
32 TIGR01315 5C_CHO_kinase FGGY-f 96.6 0.0074 1.6E-07 63.0 8.9 73 97-176 2-77 (541)
33 TIGR01311 glycerol_kin glycero 96.6 0.0072 1.6E-07 62.2 8.3 73 96-175 2-77 (493)
34 TIGR01314 gntK_FGGY gluconate 96.6 0.0091 2E-07 61.6 8.9 61 96-159 1-64 (505)
35 PRK10939 autoinducer-2 (AI-2) 96.5 0.011 2.4E-07 61.2 9.0 81 96-183 4-93 (520)
36 PRK13321 pantothenate kinase; 96.5 0.0033 7.2E-08 59.4 4.6 195 97-333 2-207 (256)
37 PRK00047 glpK glycerol kinase; 96.5 0.01 2.2E-07 61.2 8.3 62 96-160 6-70 (498)
38 TIGR01234 L-ribulokinase L-rib 96.4 0.011 2.4E-07 61.6 8.3 62 96-160 2-78 (536)
39 PRK15027 xylulokinase; Provisi 96.3 0.017 3.8E-07 59.2 8.8 71 96-175 1-74 (484)
40 PRK10331 L-fuculokinase; Provi 95.9 0.031 6.7E-07 57.2 8.5 60 96-158 3-67 (470)
41 PTZ00294 glycerol kinase-like 95.9 0.035 7.5E-07 57.4 9.0 61 96-159 3-66 (504)
42 COG1070 XylB Sugar (pentulose 95.8 0.033 7.2E-07 57.6 8.3 62 96-159 5-69 (502)
43 PRK04123 ribulokinase; Provisi 95.6 0.047 1E-06 57.0 8.7 62 96-160 4-75 (548)
44 PLN02295 glycerol kinase 95.6 0.046 9.9E-07 56.7 8.5 62 96-160 1-65 (512)
45 COG2971 Predicted N-acetylgluc 95.4 0.22 4.8E-06 48.4 11.9 126 95-260 5-131 (301)
46 TIGR02628 fuculo_kin_coli L-fu 95.4 0.054 1.2E-06 55.4 8.1 59 96-157 2-65 (465)
47 KOG2517 Ribulose kinase and re 93.6 0.56 1.2E-05 48.9 10.6 95 94-201 5-103 (516)
48 PRK03011 butyrate kinase; Prov 93.5 0.49 1.1E-05 47.2 9.6 162 96-273 3-205 (358)
49 TIGR00241 CoA_E_activ CoA-subs 92.0 0.46 1E-05 44.5 6.8 50 96-160 1-50 (248)
50 TIGR02627 rhamnulo_kin rhamnul 91.5 0.41 8.9E-06 48.8 6.3 59 98-156 1-63 (454)
51 COG0554 GlpK Glycerol kinase [ 91.2 0.49 1.1E-05 48.7 6.4 88 94-195 4-92 (499)
52 PLN02669 xylulokinase 90.9 0.82 1.8E-05 48.1 8.1 63 87-155 3-81 (556)
53 TIGR01174 ftsA cell division p 90.0 14 0.00031 36.5 15.6 51 205-257 157-209 (371)
54 COG1069 AraB Ribulose kinase [ 88.5 1.2 2.6E-05 46.5 6.8 64 96-162 4-71 (544)
55 TIGR01175 pilM type IV pilus a 87.9 4.4 9.5E-05 39.4 10.2 63 96-160 4-66 (348)
56 PRK13410 molecular chaperone D 85.2 2.6 5.6E-05 45.5 7.5 19 95-113 2-20 (668)
57 PRK13324 pantothenate kinase; 84.6 7.1 0.00015 37.2 9.4 46 97-151 2-48 (258)
58 CHL00094 dnaK heat shock prote 83.5 3.4 7.5E-05 44.0 7.5 19 95-113 2-20 (621)
59 TIGR00671 baf pantothenate kin 82.9 16 0.00034 34.4 10.9 45 98-151 2-46 (243)
60 PRK15080 ethanolamine utilizat 82.1 16 0.00034 34.7 10.7 115 89-238 18-132 (267)
61 PTZ00400 DnaK-type molecular c 80.8 5.1 0.00011 43.2 7.6 19 95-113 41-59 (663)
62 PTZ00186 heat shock 70 kDa pre 80.7 6.2 0.00013 42.6 8.2 33 78-114 14-46 (657)
63 PTZ00009 heat shock 70 kDa pro 80.5 8.8 0.00019 41.3 9.3 20 95-114 4-23 (653)
64 TIGR03286 methan_mark_15 putat 80.2 4.1 8.9E-05 41.4 6.2 24 90-113 139-162 (404)
65 COG5146 PanK Pantothenate kina 79.8 4.1 8.8E-05 38.9 5.6 173 97-304 20-199 (342)
66 COG4972 PilM Tfp pilus assembl 79.6 13 0.00027 37.0 9.1 168 96-266 11-216 (354)
67 PRK05183 hscA chaperone protei 78.2 4.9 0.00011 42.9 6.5 21 93-113 17-37 (616)
68 PRK00290 dnaK molecular chaper 77.6 4.4 9.6E-05 43.2 5.9 19 95-113 2-20 (627)
69 PRK13411 molecular chaperone D 76.4 10 0.00022 40.8 8.3 19 95-113 2-20 (653)
70 PLN03184 chloroplast Hsp70; Pr 75.0 9.4 0.0002 41.3 7.6 18 96-113 40-57 (673)
71 smart00842 FtsA Cell division 74.9 28 0.0006 30.9 9.5 57 97-158 1-59 (187)
72 PF00012 HSP70: Hsp70 protein; 73.9 50 0.0011 34.5 12.6 49 206-256 149-200 (602)
73 COG0443 DnaK Molecular chapero 73.1 80 0.0017 33.7 13.8 53 208-262 136-190 (579)
74 TIGR02350 prok_dnaK chaperone 69.2 67 0.0015 34.0 12.3 48 207-256 145-195 (595)
75 PF11104 PilM_2: Type IV pilus 67.9 22 0.00049 34.7 7.9 61 99-161 1-61 (340)
76 PRK13326 pantothenate kinase; 65.4 16 0.00034 35.0 6.0 45 96-149 7-51 (262)
77 PRK03657 hypothetical protein; 63.0 27 0.00058 31.3 6.7 68 47-116 70-145 (170)
78 COG1924 Activator of 2-hydroxy 61.5 50 0.0011 33.4 8.8 101 91-246 131-231 (396)
79 TIGR00555 panK_eukar pantothen 61.1 19 0.00041 34.8 5.7 43 97-151 2-44 (279)
80 PRK01433 hscA chaperone protei 58.7 1.6E+02 0.0034 31.5 12.7 48 208-257 157-206 (595)
81 PF05378 Hydant_A_N: Hydantoin 58.5 31 0.00067 30.8 6.3 49 98-158 2-50 (176)
82 PRK13320 pantothenate kinase; 57.9 27 0.00058 32.9 6.1 17 97-113 4-20 (244)
83 TIGR01991 HscA Fe-S protein as 55.5 63 0.0014 34.4 9.1 16 98-113 2-17 (599)
84 TIGR03192 benz_CoA_bzdQ benzoy 54.3 62 0.0014 31.6 8.1 19 95-113 32-50 (293)
85 TIGR03706 exo_poly_only exopol 52.0 61 0.0013 31.2 7.7 62 97-158 2-65 (300)
86 PRK13317 pantothenate kinase; 50.7 14 0.0003 35.6 2.9 21 95-115 2-22 (277)
87 PF11215 DUF3010: Protein of u 50.5 44 0.00095 29.1 5.7 61 97-161 3-63 (138)
88 COG1521 Pantothenate kinase ty 49.4 92 0.002 29.7 8.2 44 97-149 2-45 (251)
89 TIGR02259 benz_CoA_red_A benzo 49.1 21 0.00046 36.4 4.0 21 96-116 3-23 (432)
90 PRK10854 exopolyphosphatase; P 47.7 1.1E+02 0.0023 32.1 9.1 62 96-157 12-75 (513)
91 TIGR02529 EutJ ethanolamine ut 46.9 2.4E+02 0.0052 26.2 12.6 49 209-262 78-127 (239)
92 PRK09472 ftsA cell division pr 46.7 1.4E+02 0.0031 30.1 9.7 59 95-157 8-67 (420)
93 TIGR02261 benz_CoA_red_D benzo 45.5 1.2E+02 0.0026 29.1 8.4 21 96-116 2-22 (262)
94 PF14574 DUF4445: Domain of un 45.3 99 0.0021 31.6 8.2 18 98-115 4-21 (412)
95 COG0816 Predicted endonuclease 44.5 48 0.001 28.9 5.0 22 95-116 2-23 (141)
96 PRK00109 Holliday junction res 43.7 1.3E+02 0.0027 25.8 7.6 23 94-116 3-25 (138)
97 PF05402 PqqD: Coenzyme PQQ sy 42.4 64 0.0014 23.4 4.9 34 35-68 30-63 (68)
98 COG3734 DgoK 2-keto-3-deoxy-ga 42.2 22 0.00048 34.6 2.9 24 94-117 4-27 (306)
99 TIGR03123 one_C_unchar_1 proba 41.7 31 0.00068 34.0 3.9 32 98-134 1-32 (318)
100 PF03652 UPF0081: Uncharacteri 40.8 97 0.0021 26.4 6.4 102 96-240 2-105 (135)
101 PRK11031 guanosine pentaphosph 37.7 1.4E+02 0.003 31.0 8.2 63 96-158 7-71 (496)
102 cd00529 RuvC_resolvase Hollida 37.7 1.9E+02 0.0041 25.0 7.9 59 96-159 1-59 (154)
103 PRK13717 conjugal transfer pro 37.3 67 0.0015 27.5 4.7 63 9-72 22-90 (128)
104 PF03309 Pan_kinase: Type III 36.9 84 0.0018 28.4 5.7 18 97-114 1-18 (206)
105 PRK10753 transcriptional regul 34.3 99 0.0021 24.4 5.1 36 38-73 4-39 (90)
106 PRK11677 hypothetical protein; 34.1 1.2E+02 0.0025 26.3 5.7 63 9-72 6-79 (134)
107 PF01548 DEDD_Tnp_IS110: Trans 34.1 77 0.0017 26.4 4.7 45 97-150 1-45 (144)
108 PRK03661 hypothetical protein; 33.9 1.4E+02 0.003 26.5 6.4 56 47-103 64-127 (164)
109 TIGR00987 himA integration hos 33.4 1E+02 0.0022 24.5 5.1 36 38-73 5-40 (96)
110 PRK00285 ihfA integration host 33.0 1E+02 0.0022 24.5 5.1 37 37-73 5-41 (99)
111 TIGR03123 one_C_unchar_1 proba 32.4 33 0.00072 33.8 2.4 20 94-113 127-146 (318)
112 PF13941 MutL: MutL protein 31.7 74 0.0016 33.0 4.9 55 96-157 1-55 (457)
113 PF02075 RuvC: Crossover junct 31.4 2.1E+02 0.0046 24.7 7.1 59 97-160 1-59 (149)
114 smart00411 BHL bacterial (prok 30.9 1.1E+02 0.0024 23.5 4.8 36 38-73 4-39 (90)
115 COG3105 Uncharacterized protei 30.8 99 0.0021 26.7 4.6 61 11-72 13-84 (138)
116 COG1546 CinA Uncharacterized p 30.6 2.2E+02 0.0048 25.4 7.0 68 48-117 65-140 (162)
117 PF06295 DUF1043: Protein of u 30.4 1.3E+02 0.0029 25.4 5.5 33 10-42 3-35 (128)
118 COG0145 HyuA N-methylhydantoin 29.8 42 0.00092 36.5 2.9 60 54-113 210-296 (674)
119 PF00216 Bac_DNA_binding: Bact 29.7 1.2E+02 0.0025 23.3 4.7 36 38-73 4-39 (90)
120 PRK10664 transcriptional regul 27.9 1.5E+02 0.0033 23.4 5.1 36 39-74 5-40 (90)
121 PRK05183 hscA chaperone protei 27.8 2.1E+02 0.0045 30.6 7.7 24 94-117 200-223 (616)
122 KOG3127 Deoxycytidylate deamin 27.8 38 0.00083 31.7 1.8 18 232-249 73-90 (230)
123 PF01968 Hydantoinase_A: Hydan 27.5 58 0.0013 31.3 3.2 18 96-113 78-95 (290)
124 PRK08621 galactose-6-phosphate 27.5 47 0.001 29.0 2.2 62 200-262 7-74 (142)
125 TIGR02744 TrbI_Ftype type-F co 27.5 87 0.0019 26.3 3.7 49 37-86 43-93 (112)
126 TIGR00199 cinA_cterm competenc 27.3 2.6E+02 0.0057 24.2 6.9 55 47-102 52-114 (146)
127 cd00591 HU_IHF Integration hos 26.5 1.5E+02 0.0033 22.5 4.8 35 38-72 3-37 (87)
128 PRK05571 ribose-5-phosphate is 26.5 39 0.00084 29.6 1.6 63 200-262 7-77 (148)
129 PF00012 HSP70: Hsp70 protein; 26.4 3.4E+02 0.0074 28.2 8.9 25 93-117 186-210 (602)
130 COG3894 Uncharacterized metal- 25.4 74 0.0016 33.6 3.5 38 227-265 311-348 (614)
131 KOG1621 1D-myo-inositol-tripho 25.0 1.8E+02 0.0038 29.6 5.9 37 35-72 347-383 (458)
132 TIGR01991 HscA Fe-S protein as 24.9 2.5E+02 0.0054 29.9 7.6 25 93-117 179-203 (599)
133 smart00268 ACTIN Actin. ACTIN 24.8 5.1E+02 0.011 25.2 9.3 37 220-261 122-158 (373)
134 PRK00039 ruvC Holliday junctio 24.6 2.2E+02 0.0047 25.2 6.0 22 96-117 3-24 (164)
135 COG4071 Uncharacterized protei 24.6 83 0.0018 29.6 3.4 60 207-266 145-206 (278)
136 PF02615 Ldh_2: Malate/L-lacta 24.5 80 0.0017 31.3 3.5 57 33-92 4-60 (335)
137 PRK13260 2,3-diketo-L-gulonate 24.3 89 0.0019 31.0 3.8 57 33-92 4-60 (332)
138 PTZ00186 heat shock 70 kDa pre 24.3 2.7E+02 0.0059 30.2 7.8 24 94-117 211-234 (657)
139 TIGR03175 AllD ureidoglycolate 24.2 86 0.0019 31.3 3.7 56 34-92 5-60 (349)
140 PF12464 Mac: Maltose acetyltr 24.0 5.5 0.00012 28.3 -3.5 8 314-321 1-8 (55)
141 CHL00094 dnaK heat shock prote 23.9 3.3E+02 0.0073 29.0 8.4 23 94-116 186-208 (621)
142 KOG3463 Transcription initiati 23.7 2.1E+02 0.0045 23.9 5.2 44 36-79 15-58 (109)
143 PRK13331 pantothenate kinase; 23.5 85 0.0018 29.9 3.4 21 93-113 5-25 (251)
144 TIGR01118 lacA galactose-6-pho 23.5 60 0.0013 28.3 2.2 62 200-262 7-74 (141)
145 PF14142 YrzO: YrzO-like prote 23.4 1.5E+02 0.0033 20.4 3.6 32 13-45 11-42 (46)
146 PRK00199 ihfB integration host 23.0 2.1E+02 0.0045 22.5 5.1 36 38-73 4-40 (94)
147 PRK01433 hscA chaperone protei 22.9 2.7E+02 0.0059 29.7 7.4 25 93-117 191-215 (595)
148 PTZ00009 heat shock 70 kDa pro 22.6 2.9E+02 0.0063 29.8 7.6 24 94-117 193-216 (653)
149 cd00012 ACTIN Actin; An ubiqui 22.6 6.8E+02 0.015 24.3 9.8 36 220-260 122-157 (371)
150 COG2055 Malate/L-lactate dehyd 22.5 1.2E+02 0.0026 30.4 4.3 60 33-95 7-66 (349)
151 PRK13411 molecular chaperone D 22.4 3.5E+02 0.0077 29.1 8.2 25 93-117 184-208 (653)
152 TIGR02350 prok_dnaK chaperone 22.4 3.6E+02 0.0077 28.5 8.2 25 93-117 181-205 (595)
153 PF02268 TFIIA_gamma_N: Transc 22.3 2.3E+02 0.0051 20.2 4.6 36 36-71 14-49 (49)
154 PRK10098 putative dehydrogenas 22.3 1E+02 0.0022 30.8 3.8 57 33-92 8-64 (350)
155 PLN03184 chloroplast Hsp70; Pr 22.3 3.5E+02 0.0075 29.4 8.1 23 94-116 223-245 (673)
156 PF14587 Glyco_hydr_30_2: O-Gl 21.7 1.5E+02 0.0032 30.1 4.9 84 135-237 148-235 (384)
157 cd01817 RGS12_RBD Ubiquitin do 21.4 1E+02 0.0022 23.9 2.8 19 204-222 19-37 (73)
158 PF14450 FtsA: Cell division p 21.2 98 0.0021 25.4 3.0 56 97-157 1-58 (120)
159 PF15324 TALPID3: Hedgehog sig 21.1 60 0.0013 36.9 2.1 17 8-24 65-81 (1252)
160 PRK15025 ureidoglycolate dehyd 21.0 1.1E+02 0.0024 30.5 3.8 56 34-92 5-60 (349)
161 PF14639 YqgF: Holliday-juncti 20.7 4.6E+02 0.0099 22.8 7.2 16 225-240 101-116 (150)
162 COG0248 GppA Exopolyphosphatas 20.5 1.8E+02 0.0038 30.5 5.3 62 96-157 4-67 (492)
163 TIGR00988 hip integration host 20.1 2.6E+02 0.0057 21.8 5.1 36 38-73 4-40 (94)
No 1
>PLN02405 hexokinase
Probab=100.00 E-value=1.5e-100 Score=774.99 Aligned_cols=331 Identities=84% Similarity=1.263 Sum_probs=309.9
Q ss_pred CCceeEEeeehhhHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCccee
Q 019310 1 MGKVTVAATVVCAAAVCAAAALVVRRRMKSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (343)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~M 80 (343)
|+|+.++++++|+|+++++++.+++++.++.++|.++++++++++++|.+|.++|++|+++|..||++||++++.|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l~M 80 (497)
T PLN02405 1 MGKVAVGAAVVCAAAVCAAAALVVRRRMKSSGKWARAMEILKEFEEDCATPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (497)
T ss_pred CCceeeehhhhhHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCcce
Confidence 89988999999999889899999998888778888999999999999999999999999999999999999876688999
Q ss_pred eecccccCCCCcccccEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCC
Q 019310 81 LISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (343)
Q Consensus 81 lPs~v~~lP~G~E~G~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~ 160 (343)
|||||+++|+|+|+|.|||||||||||||++|+|.|++..++.+++++++||++++.+++++||||||+||.+|+++++.
T Consensus 81 lpSyv~~lPtG~E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~~~ 160 (497)
T PLN02405 81 LISYVDNLPSGDEKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATEGE 160 (497)
T ss_pred eccccccCCCCCcceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999876667777778999999999999999999999999999998865
Q ss_pred CCCCCCCCeeeeeeeeeeeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhcccc
Q 019310 161 GFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY 240 (343)
Q Consensus 161 ~~~~~~~~~l~lGftFSfPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y 240 (343)
+.+...++.+||||||||||+|+++++|+|++|||||++++++|+||+++|++||+|++++++|+||+|||||||++++|
T Consensus 161 ~~~~~~~~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY 240 (497)
T PLN02405 161 DFHLPPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRY 240 (497)
T ss_pred ccccCcccccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhc
Confidence 43222346799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEEccccceeEEcccCcCCCCCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhHhccCCCCCcccceeeccc
Q 019310 241 HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQVAILMCQF 320 (343)
Q Consensus 241 ~~~~~~iglIlGTGtNa~y~e~~~~I~k~~~~~~e~~~miINtEwG~f~~~~lp~T~~D~~lD~~s~nPG~q~fEKmiSG 320 (343)
.+++|.||+|+|||||+||+|+.++|+|+++..+..++|+||||||+|+.+++|+|+||++||++|.|||+|+|||||||
T Consensus 241 ~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG 320 (497)
T PLN02405 241 YNPDVVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDHALDVESLNPGEQIFEKIISG 320 (497)
T ss_pred CCCCceEEEEEeCCeeeEEEeecccCccccccCCCCCeEEEEeccccCCCCCCCCchHHHHHhhcCCCCCcchhhHHHhh
Confidence 99999999999999999999999999999876566789999999999998889999999999999999999999999999
Q ss_pred ch-----hHHhhhhhc
Q 019310 321 HV-----TIAYIDSFI 331 (343)
Q Consensus 321 ~~-----~~~~~~~~~ 331 (343)
|| |++.+|+.-
T Consensus 321 ~YLGEivRlvLl~l~~ 336 (497)
T PLN02405 321 MYLGEILRRVLLKMAE 336 (497)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 96 999999854
No 2
>PLN02596 hexokinase-like
Probab=100.00 E-value=2.9e-99 Score=763.79 Aligned_cols=330 Identities=48% Similarity=0.802 Sum_probs=305.9
Q ss_pred CCceeEEeeehhhHHHHHHHHHHhhhhh-cccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCcce
Q 019310 1 MGKVTVAATVVCAAAVCAAAALVVRRRM-KSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLK 79 (343)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~ 79 (343)
|+|+.++++++|++++|++| +++++|. +++.+|+++++++++|+++|.+|.++|++|+++|.+||++||+.+..|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~ 80 (490)
T PLN02596 2 MRKEVVVAATVATVAAVAAA-VLMGRWKRRKERQWKHTQRILRKFARECATPVSKLWEVADALVSDMTASLTAEETTTLN 80 (490)
T ss_pred CcceeeehhHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 89999999999999989888 6777776 666799999999999999999999999999999999999999886667899
Q ss_pred eeecccccCCCCcccccEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcC
Q 019310 80 MLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (343)
Q Consensus 80 MlPs~v~~lP~G~E~G~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~ 159 (343)
||||||+++|+|+|+|.|||||||||||||++|+|.|++..+.++.+++|+||++++.+++++||||||+||++|+++++
T Consensus 81 MlpTyv~~lPtG~E~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~~~ 160 (490)
T PLN02596 81 MLVSYVASLPSGDEKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHP 160 (490)
T ss_pred eecccCCCCCCCCcceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999987655677777899999999999999999999999999999876
Q ss_pred CCCCCCCCCeeeeeeeeeeeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhccc
Q 019310 160 EGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGR 239 (343)
Q Consensus 160 ~~~~~~~~~~l~lGftFSfPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~ 239 (343)
.+....+++.+||||||||||+|+++++|+|++| |||++++++|+||+++|++|++|++++++|+||+|||||||++++
T Consensus 161 ~~~~~~~~~~l~lGfTFSFP~~Q~si~~G~Li~W-KgF~~~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~a 239 (490)
T PLN02596 161 GDEADTPERVKKLGFTVSYPVDQAAASSGSAIKW-KSFSADDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGR 239 (490)
T ss_pred cccccCcccccccceEEeeeeeecCCCCEEEEEe-ccccCCCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhh
Confidence 5432223457999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEEEccccceeEEcccCcCCCCCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhHhccCCCCCcccceeecc
Q 019310 240 YHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQVAILMCQ 319 (343)
Q Consensus 240 y~~~~~~iglIlGTGtNa~y~e~~~~I~k~~~~~~e~~~miINtEwG~f~~~~lp~T~~D~~lD~~s~nPG~q~fEKmiS 319 (343)
|.+++|.||+|+|||||+||+|+.++|+|+++..+..++|+||||||+|+...+|+|+||++||++|.|||+|+||||+|
T Consensus 240 Y~~~~~~iG~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKMiS 319 (490)
T PLN02596 240 YYNKDTVAAVTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFNSCHLPITEFDASLDAESSNPGSRIFEKLTS 319 (490)
T ss_pred cCCCCeEEEEEEecccceEEEEEccccccccCCCCCCCeEEEEeccccCCCCCCCCChHHHHHhccCCCCCcchHHHHHh
Confidence 99999999999999999999999999999987666678999999999998778999999999999999999999999999
Q ss_pred cch-----hHHhhhhhcc
Q 019310 320 FHV-----TIAYIDSFID 332 (343)
Q Consensus 320 G~~-----~~~~~~~~~~ 332 (343)
||| |++.+|++-+
T Consensus 320 G~YLGElvRlvl~~l~~~ 337 (490)
T PLN02596 320 GMYLGEIVRRVLLKMAEE 337 (490)
T ss_pred hhhHHHHHHHHHHHHHHh
Confidence 996 9999986554
No 3
>PLN02362 hexokinase
Probab=100.00 E-value=2.1e-99 Score=768.50 Aligned_cols=327 Identities=61% Similarity=0.952 Sum_probs=305.7
Q ss_pred CCceeEEeeehhhHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCccee
Q 019310 1 MGKVTVAATVVCAAAVCAAAALVVRRRMKSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (343)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~M 80 (343)
|+|+.++++++|+++++++++..++++.+...+|+++++++++|+++|.+|.++|++|+++|+.||++||++++.|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l~M 80 (509)
T PLN02362 1 MGKVAVGLAAAAAVAACAVAAVMVGRRVKSRRKWRRVVGVLKELEEACETPVGRLRQVVDAMAVEMHAGLASEGGSKLKM 80 (509)
T ss_pred CCceeeehhhhHHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCCce
Confidence 89999999999988888899889998888778888999999999999999999999999999999999999875688999
Q ss_pred eecccccCCCCcccccEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCC
Q 019310 81 LISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (343)
Q Consensus 81 lPs~v~~lP~G~E~G~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~ 160 (343)
|||||+++|+|+|+|.|||||||||||||++|+|.|++..+..+++++|+||++++.+++++||||||+||.+|+++++.
T Consensus 81 lPTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i~~fl~~~~~ 160 (509)
T PLN02362 81 LLTFVDDLPTGSEIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSLKQFVEKEEN 160 (509)
T ss_pred ecCccCCCCCCCcceeEEEEecCCceEEEEEEEecCCCcceeeceeEEEecChhhccCCHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999876666666667899999999999999999999999999998865
Q ss_pred CCCCCCCCeeeeeeeeeeeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhcccc
Q 019310 161 GFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY 240 (343)
Q Consensus 161 ~~~~~~~~~l~lGftFSfPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y 240 (343)
+.+.+..+.+||||||||||+|+++++|+|++|||||++++++|+||+++|++||+|++++++|+||+|||||||++++|
T Consensus 161 ~~~~~~~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY 240 (509)
T PLN02362 161 GSEFSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHY 240 (509)
T ss_pred cccccccccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhc
Confidence 43222235799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEEccccceeEEcccCcCCCCCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhHhccCCCCCcccceeeccc
Q 019310 241 HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQVAILMCQF 320 (343)
Q Consensus 241 ~~~~~~iglIlGTGtNa~y~e~~~~I~k~~~~~~e~~~miINtEwG~f~~~~lp~T~~D~~lD~~s~nPG~q~fEKmiSG 320 (343)
.+++|.||+|+|||||+||+|+.++|+|+++..+..++|+||||||+|+.+++|+|+||.+||++|.|||+|+|||||||
T Consensus 241 ~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG 320 (509)
T PLN02362 241 HDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISG 320 (509)
T ss_pred CCCCceEEEEEECCccceEeeehhhcccccccCCCCCcEEEEeeccCCCCCCCCCchHHHHHhcCCCCcCcchHHHHHhh
Confidence 99999999999999999999999999999876666789999999999998889999999999999999999999999999
Q ss_pred ch-----hHHhh
Q 019310 321 HV-----TIAYI 327 (343)
Q Consensus 321 ~~-----~~~~~ 327 (343)
|| |++.+
T Consensus 321 ~YLGEivRlvL~ 332 (509)
T PLN02362 321 MYLGDIVRRVIL 332 (509)
T ss_pred ccHHHHHHHHHH
Confidence 96 99999
No 4
>PLN02914 hexokinase
Probab=100.00 E-value=6.3e-94 Score=724.93 Aligned_cols=295 Identities=60% Similarity=0.977 Sum_probs=275.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCcceeeecccccCCCCcccccEEEEeeCCceEEEEEEEeC
Q 019310 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLG 115 (343)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lP~G~E~G~fLaIDlGGTNlRv~lV~l~ 115 (343)
++.+++++|+++|.+|.++|++|+++|.+||++||++++.|+++||||||+++|+|+|+|.|||||||||||||++|+|.
T Consensus 36 ~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MlpTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~ 115 (490)
T PLN02914 36 SVAPILTKLQKDCATPLPVLRHVADAMAADMRAGLAVDGGGDLKMILSYVDSLPSGNEKGLFYALDLGGTNFRVLRVQLG 115 (490)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccCCCCCcceeccccCCCCCCCeeeEEEEEecCCceEEEEEEEec
Confidence 68889999999999999999999999999999999987558899999999999999999999999999999999999999
Q ss_pred CCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeeeeeeeeccCCceEEeeecc
Q 019310 116 GREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTK 195 (343)
Q Consensus 116 g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGftFSfPv~q~~i~~g~Li~WtK 195 (343)
|++.++..+.+++++||++++.+++++||||||+||.+|++++..+.+.+.++.+||||||||||+|+++++|+|++|||
T Consensus 116 g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~WTK 195 (490)
T PLN02914 116 GKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHLPEGRKREIGFTFSFPVKQTSIDSGILMKWTK 195 (490)
T ss_pred CCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccCCccccccceeeEeeeeecCCCCceEEEEecc
Confidence 87666677777899999999999999999999999999999876432222346799999999999999999999999999
Q ss_pred ccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccccceeEEcccCcCCCCCCCCCC
Q 019310 196 GFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPK 275 (343)
Q Consensus 196 gF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~~~~~~iglIlGTGtNa~y~e~~~~I~k~~~~~~e 275 (343)
||++++++|+||+++|++||+|++++|+|+||+|||||||++++|.+++|.||+|+|||||+||+|+.++|+|+++..+.
T Consensus 196 GF~~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~~~~iGlIlGTGtNacY~E~~~~i~k~~~~~~~ 275 (490)
T PLN02914 196 GFAVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDAIPKLQGQKSS 275 (490)
T ss_pred ccccCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCCCceEEEEEECCeeeEEEeecccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876566
Q ss_pred CCcEEEEecCCCcCCCCCCCChhhHhHhccCCCCCcccceeecccch-----hHHhhhhhc
Q 019310 276 SGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQVAILMCQFHV-----TIAYIDSFI 331 (343)
Q Consensus 276 ~~~miINtEwG~f~~~~lp~T~~D~~lD~~s~nPG~q~fEKmiSG~~-----~~~~~~~~~ 331 (343)
.++|+||||||+|+ +++|+|+||++||++|.|||+|+||||+|||| |++.+|+.-
T Consensus 276 ~~~miINtEwG~F~-~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvLl~l~~ 335 (490)
T PLN02914 276 SGRTIINTEWGAFS-DGLPLTEFDREMDAASINPGEQIFEKTISGMYLGEIVRRVLLKMAE 335 (490)
T ss_pred CceEEEeccccccC-CCCCCChHHHHHhhCCCCCCcchhhhHHhhhhHHHHHHHHHHHHHH
Confidence 78999999999996 57999999999999999999999999999996 999998643
No 5
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=2.5e-86 Score=668.06 Aligned_cols=283 Identities=36% Similarity=0.545 Sum_probs=255.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC---------CCCcceeeecccccCCCCcccccEEEEeeCCce
Q 019310 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE---------GGSKLKMLISYVDNLPTGDEKGLFYALDLGGTN 106 (343)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~---------~~s~l~MlPs~v~~lP~G~E~G~fLaIDlGGTN 106 (343)
+.++.+++++++|.++.++|++|+++|.+||++||+++ +.|+++||||||+++|+|+|+|.||||||||||
T Consensus 6 ~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~~~~~~~~~~s~l~Mlps~v~~lPtG~E~G~fLAlDlGGTN 85 (464)
T PTZ00107 6 KQRVRLASLVNQFTMSKEKLKELVDYFLYELVEGLEAHRRHRNLWIPNECSFKMLDSCVYNLPTGKEKGVYYAIDFGGTN 85 (464)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCccccccccCCCCCCCccceEEEEecCCce
Confidence 44566888888999999999999999999999999875 247899999999999999999999999999999
Q ss_pred EEEEEEEeCCCcceeEEEeeEEeecCCCcccC---------CchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeee
Q 019310 107 FRVLRVQLGGREGRVVKQEFEEVSIPPHLMTG---------SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (343)
Q Consensus 107 lRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~---------~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGftFS 177 (343)
|||++|+|.|++. ....+++++||++++.+ ++++||||||+||.+|+++++... ...+.+|||||||
T Consensus 86 ~RV~~V~L~g~~~--~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~~~~--~~~~~l~lGfTFS 161 (464)
T PTZ00107 86 FRAVRVSLRGGGK--MERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENGDPE--DLNKPVPVGFTFS 161 (464)
T ss_pred EEEEEEEeCCCCc--eeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhccccc--cccccccceeEEe
Confidence 9999999988643 33445789999998888 899999999999999999876311 1135799999999
Q ss_pred eeeeeccCCceEEeeecccccc-----CCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhcccccC----CCcEEE
Q 019310 178 FPVRQTSIASGDLIKWTKGFSI-----EDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN----KDAIAA 248 (343)
Q Consensus 178 fPv~q~~i~~g~Li~WtKgF~~-----~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~~----~~~~ig 248 (343)
|||+|+++++|+|++|||||++ ++++|+||+++|++||+|++++++|+||+|||||||++++|.+ ++|.||
T Consensus 162 FP~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iG 241 (464)
T PTZ00107 162 FPCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVG 241 (464)
T ss_pred eeeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEE
Confidence 9999999999999999999999 8999999999999999999999999999999999999999999 999999
Q ss_pred EEEccccceeEEcccCcCCCCCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhHhccCCCCCcccceeecccch-----h
Q 019310 249 VILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQVAILMCQFHV-----T 323 (343)
Q Consensus 249 lIlGTGtNa~y~e~~~~I~k~~~~~~e~~~miINtEwG~f~~~~lp~T~~D~~lD~~s~nPG~q~fEKmiSG~~-----~ 323 (343)
+|+|||||+||+|+.... +..++|+||||||+|| +.+|+|+||+.+|+.|.|||+|+||||+|||| |
T Consensus 242 lIlGTG~NacY~E~~~~~-------~~~~~~iINtEwG~F~-~~lp~T~~D~~lD~~S~npg~Q~fEKmiSG~YLGEi~R 313 (464)
T PTZ00107 242 VIIGTGSNACYFEPEVSA-------YGYAGTPINMECGNFD-SKLPITPYDLEMDWYTPNRGRQQFEKMISGAYLGEISR 313 (464)
T ss_pred EEEeccccceeeehhhcc-------CCCCcEEEEeeccccC-CCCCCChHHHHHhhcCCCCCcCchhhHHhhhhHHHHHH
Confidence 999999999999964321 2346799999999996 45999999999999999999999999999996 9
Q ss_pred HHhhhhh
Q 019310 324 IAYIDSF 330 (343)
Q Consensus 324 ~~~~~~~ 330 (343)
++.+|++
T Consensus 314 lvl~~l~ 320 (464)
T PTZ00107 314 RLIVHLL 320 (464)
T ss_pred HHHHHHH
Confidence 9999987
No 6
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.1e-86 Score=659.43 Aligned_cols=298 Identities=46% Similarity=0.674 Sum_probs=273.2
Q ss_pred hhhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCC-CcceeeecccccCCCCcccccEEEEeeCC
Q 019310 26 RRMKSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGG-SKLKMLISYVDNLPTGDEKGLFYALDLGG 104 (343)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~-s~l~MlPs~v~~lP~G~E~G~fLaIDlGG 104 (343)
++...+.+++.++++++++++.|.+|.++|++++++|.+||++||+...+ +.++||||||.++|+|+|+|.||||||||
T Consensus 16 ~~~~~~~~~~~~~~~l~~~~~~f~l~~~~L~~v~~~~~~em~~gL~~~~~g~~~~mlpt~V~~lP~G~E~G~~lalDLGG 95 (474)
T KOG1369|consen 16 MVTAVASRLAAVSRQLEELLALFQLPDEQLREVVDAFREEMERGLAKKTHGSAVKMLPTYVPDLPDGTEKGKFLALDLGG 95 (474)
T ss_pred hhhhhhhhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCcccccchhhcccCCCCCcCCCEEEEecCC
Confidence 34444467888999999999999999999999999999999999995543 34999999999999999999999999999
Q ss_pred ceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeeeeeeeecc
Q 019310 105 TNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTS 184 (343)
Q Consensus 105 TNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGftFSfPv~q~~ 184 (343)
|||||++|.|.|++. .+.+++++|+||++++.+++++|||||++|+.+|+++++... ...+|+||||||||+|++
T Consensus 96 Tn~Rv~~v~L~g~~~-~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~----~~~l~lgFTFSfP~~Q~s 170 (474)
T KOG1369|consen 96 TNFRVLLVKLGGGRT-SVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLKG----ASKLPLGFTFSFPCRQTS 170 (474)
T ss_pred CceEEEEEEecCCcc-cceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhcccc----ccccccceEEeeeeeecc
Confidence 999999999998865 566777899999999999999999999999999999987652 122999999999999999
Q ss_pred CCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCC-ceEEEEEechHHHHhcccccCCCcEEEEEEccccceeEEccc
Q 019310 185 IASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERA 263 (343)
Q Consensus 185 i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~-v~vvaIvNDTvatlla~~y~~~~~~iglIlGTGtNa~y~e~~ 263 (343)
+++|.|++|||||++++++|+||+++|+++|+|++++ +.|+|++|||||||++++|.+++|.||+|+|||||+||+|+.
T Consensus 171 i~~g~L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~igvI~GTGtNacY~e~~ 250 (474)
T KOG1369|consen 171 IDKGTLIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIGVIFGTGTNACYMEDM 250 (474)
T ss_pred cccceEEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEEEEEECCCccceeeeec
Confidence 9999999999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCCCCCCcEEEEecCCCcCCC--CCCCChhhHhHhccCCCCCcccceeecccch-----hHHhhhh
Q 019310 264 HAIPKWHGLLPKSGEMVINMEWGNFRSS--HLPLTEYDEALDTESLNPGEQVAILMCQFHV-----TIAYIDS 329 (343)
Q Consensus 264 ~~I~k~~~~~~e~~~miINtEwG~f~~~--~lp~T~~D~~lD~~s~nPG~q~fEKmiSG~~-----~~~~~~~ 329 (343)
.+|+|+++..... +|+||||||+||++ .+|+|+||..||++|+|||+|.||||+|||| |++-+|.
T Consensus 251 ~~i~k~~~~~~~~-~miIN~EWG~F~~~~~~l~~T~yD~~vD~eS~npG~~~~EKmisGmYLGEivR~vLl~m 322 (474)
T KOG1369|consen 251 RNIEKVEGDAGRG-PMCINTEWGAFGDNSLDLPRTEYDVVVDEESLNPGKQLFEKMISGMYLGEIVRLVLLDL 322 (474)
T ss_pred cchhhcccccCCC-ceEEEccccCCCccccccchhhHHHHHhhhcCCcchhHHHHHhccccHHHHHHHHHHHH
Confidence 9999999865544 89999999999944 5899999999999999999999999999996 6665553
No 7
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.4e-76 Score=573.14 Aligned_cols=285 Identities=41% Similarity=0.646 Sum_probs=263.7
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCcceeeecccccCCCCcccccEEEEeeCCceEEEEEE
Q 019310 33 RWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112 (343)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lP~G~E~G~fLaIDlGGTNlRv~lV 112 (343)
-|+.+++.+.++++.|.+|.|+|.++++.|.+||++||+...++.++|+|+||...|+|+|+|.|||||+||||||||+|
T Consensus 13 ~~~~l~~~~~~~~~~~~~p~e~l~~v~~~Fieel~kgL~~~~G~~l~MIP~~v~~~p~g~e~g~~LaiD~GGTnlRvc~V 92 (466)
T COG5026 13 VEAALEQAVEELVESFTVPTEDLREVVKAFIEELEKGLQPKSGDFLPMIPTWVAPLPTGNESGSVLAIDLGGTNLRVCLV 92 (466)
T ss_pred ccHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhccCCCCCCccccccccccCCCCCCCCCCEEEEecCCceEEEEEE
Confidence 47779999999999999999999999999999999999944333499999999999999999999999999999999999
Q ss_pred EeCCCcceeEEEeeEEeecCCCcccC-CchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeeeeeeeeccCCceEEe
Q 019310 113 QLGGREGRVVKQEFEEVSIPPHLMTG-SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLI 191 (343)
Q Consensus 113 ~l~g~~~~i~~~~~~~~~Ip~~~~~~-~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGftFSfPv~q~~i~~g~Li 191 (343)
.|.|+++..+.+. ++.+|.+.... +.+++|++||++++.|++++..+.. .+++++|||||||++|+++++|.|+
T Consensus 93 ~l~g~gt~~~~~s--ks~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~~---~~~l~~gfTFSYP~~q~sin~g~l~ 167 (466)
T COG5026 93 VLGGDGTFDIEQS--KSFLPVECRDSESRDELFGFIADRLAAFIKEQHPSGY---GSKLPIGFTFSYPLNQTSINEGQLI 167 (466)
T ss_pred EeCCCCCcccccC--cccCchhhccCCChHHHHHHHHHHHHHHHHHhCchhc---cCcceeeEEEeccccccccCceeeE
Confidence 9999887666443 45599998765 8999999999999999999876432 4689999999999999999999999
Q ss_pred eeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccccceeEEcccCcCCCCCC
Q 019310 192 KWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHG 271 (343)
Q Consensus 192 ~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~~~~~~iglIlGTGtNa~y~e~~~~I~k~~~ 271 (343)
+|||||++++++|+||+++|+++|++|++|++|+||+|||+||+|++.|.++++.||+|+|||||+||+|+...|+|++.
T Consensus 168 rwTKgf~i~e~ig~dvv~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~~ 247 (466)
T COG5026 168 RWTKGFDIPEVIGTDVVRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLPR 247 (466)
T ss_pred eecccCcchhhhhhhHHHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred C-CCCCCcEEEEecCCCcCCCC--CCCChhhHhHhccCCCCCcccceeecccch
Q 019310 272 L-LPKSGEMVINMEWGNFRSSH--LPLTEYDEALDTESLNPGEQVAILMCQFHV 322 (343)
Q Consensus 272 ~-~~e~~~miINtEwG~f~~~~--lp~T~~D~~lD~~s~nPG~q~fEKmiSG~~ 322 (343)
. .++.+.|+||+|||+|++.+ +|+|+||..+|++|++||.|.||||+||+|
T Consensus 248 d~~~~~~pm~iN~EwGsfdn~~~~Lp~t~ydv~idq~s~~pg~~~~Ek~~sG~y 301 (466)
T COG5026 248 DDLPETGPMLINCEWGSFDNELSVLPRTKYDVLIDQESPNPGHQIFEKMSSGMY 301 (466)
T ss_pred ccccccCCeEEEecccccCcceeeccccceeeeeccCCCCcchHHHhhhhccee
Confidence 3 46778899999999998665 999999999999999999999999999996
No 8
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=100.00 E-value=3.3e-60 Score=433.87 Aligned_cols=202 Identities=48% Similarity=0.746 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCC--CcceeeecccccCCCCcccccEEEEeeCCceEEEEEEE
Q 019310 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGG--SKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQ 113 (343)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~--s~l~MlPs~v~~lP~G~E~G~fLaIDlGGTNlRv~lV~ 113 (343)
++++.++++.+.|.+|.++|++|+++|++||+.||+++.+ +.++||||||+++|+|+|+|.|||||||||||||++|+
T Consensus 2 ~~~~~v~~~~~~f~~s~~~L~~i~~~f~~em~~gL~~~~~~~~~l~MlPs~v~~~P~G~E~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 2 DLQQAVQKLLQQFTLSDEQLQEISDRFLEEMEKGLAKSSSSMSSLKMLPSYVTSLPTGNEKGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp HHHHHHHHHHGGGS--HHHHHHHHHHHHHHHHHHHSTTTGCG-SS-EEEESEESSTTSTTEEEEEEEEESSSSEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHccCCCCceeeeccccccccCCCCCCCceEEEEeecCcEEEEEEEE
Confidence 4678889999999999999999999999999999997653 24999999999999999999999999999999999999
Q ss_pred eCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeeeeeeeeccCCceEEeee
Q 019310 114 LGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKW 193 (343)
Q Consensus 114 l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGftFSfPv~q~~i~~g~Li~W 193 (343)
|.|++. +...+++|+||++++.+++++||||||+||.+|+++++... .++.+||||||||||+|+++++|+|++|
T Consensus 82 L~g~~~--~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~---~~~~l~lGfTFSFP~~q~~~~~g~li~w 156 (206)
T PF00349_consen 82 LSGNGK--VEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLES---RDEKLPLGFTFSFPVEQTSLNSGTLIRW 156 (206)
T ss_dssp EESSSE--EEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTTS---TTSEEEEEEEEESSEEESSTTEEEE---
T ss_pred EcCCCC--ceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhcccc---cccccceEEEEEEEEEeccCCCeEEEEe
Confidence 988763 33445799999999999999999999999999999987631 2578999999999999999999999999
Q ss_pred ccccccCCCCCCcHHHHHHHHHHHcCCC-ceEEEEEechHHHHhcccccC
Q 019310 194 TKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYHN 242 (343)
Q Consensus 194 tKgF~~~~~~G~dv~~lL~~al~r~~l~-v~vvaIvNDTvatlla~~y~~ 242 (343)
||||++++++|+|++++|+++|+|++++ ++|+||+||||||||+++|.+
T Consensus 157 tKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y~~ 206 (206)
T PF00349_consen 157 TKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAYQD 206 (206)
T ss_dssp -TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHTT-
T ss_pred eccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhcCC
Confidence 9999999999999999999999999998 999999999999999999974
No 9
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=99.95 E-value=1.8e-28 Score=229.72 Aligned_cols=85 Identities=47% Similarity=0.740 Sum_probs=75.3
Q ss_pred CcEEEEEEccccceeEEcccCcCCCCCCCCCCCCcEEEEecCCCcCCC--CCCCChhhHhHhccCCCCCcccceeecccc
Q 019310 244 DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSS--HLPLTEYDEALDTESLNPGEQVAILMCQFH 321 (343)
Q Consensus 244 ~~~iglIlGTGtNa~y~e~~~~I~k~~~~~~e~~~miINtEwG~f~~~--~lp~T~~D~~lD~~s~nPG~q~fEKmiSG~ 321 (343)
+|.||+|+|||||+||+|+.++|+|+++ ..++|+||||||+|++. .+|+|+||+.||+.|+|||+|+||||+|||
T Consensus 1 ~~~iGlIlGTG~Na~Y~e~~~~i~~~~~---~~~~~iINtEwg~f~~~~~~~~~t~~D~~lD~~s~~pg~q~~EKmvsG~ 77 (243)
T PF03727_consen 1 ECRIGLILGTGTNACYMEKTSNIPKLKG---KDGKMIINTEWGNFDNGLLDLPRTEYDKQLDAESPNPGFQPFEKMVSGM 77 (243)
T ss_dssp TEEEEEEESSSEEEEEEEEGGG-TTSST---SSSEEEEEE-GGGTTTTTTTTTS-HHHHHHHHTSSSTTSSTTHHHTSHH
T ss_pred CcEEEEEEeCCeeEEEeeecccCccccc---cCCeEEEEeecCCCCCCCccCCCCcccHHHhhhhhccCceEEeeEecee
Confidence 5899999999999999999999999987 67899999999999653 289999999999999999999999999999
Q ss_pred h-----hHHhhhhhc
Q 019310 322 V-----TIAYIDSFI 331 (343)
Q Consensus 322 ~-----~~~~~~~~~ 331 (343)
| |++.+|++-
T Consensus 78 YLGEl~Rlvl~~l~~ 92 (243)
T PF03727_consen 78 YLGELVRLVLLDLIK 92 (243)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 6 999999853
No 10
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.64 E-value=3.6e-15 Score=140.13 Aligned_cols=155 Identities=14% Similarity=0.232 Sum_probs=121.5
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeee
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGft 175 (343)
.||++|+|||++|++++++.|+ ++.. ++++.|. .+.+++++.+.+.+.++..... ....+|++
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~---i~~~--~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~gIgv~ 63 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQ---RIWH--KRVPTPR----EDYPQLLQILRDLTEEADTYCG--------VQGSVGIG 63 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCC---EEEE--EEecCCC----cCHHHHHHHHHHHHHHHHhhcC--------CCceEEEE
Confidence 3799999999999999999875 4422 3444442 3467888888888887754322 22479999
Q ss_pred eeeeeee-cc-CCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhccccc----CCCcEEEE
Q 019310 176 FSFPVRQ-TS-IASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAV 249 (343)
Q Consensus 176 FSfPv~q-~~-i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~----~~~~~igl 249 (343)
++.|++. ++ +...++..|. +.++.+.|++.+ ++| |.+.||+.+..+++.|. +.++.+.+
T Consensus 64 ~pG~vd~~~g~i~~~~~~~w~---------~~~l~~~l~~~~---~~p---V~leNDanaaAlaE~~~g~~~~~~~~v~i 128 (256)
T PRK13311 64 IPGLPNADDGTVFTANVPSAM---------GQPLQADLSRLI---QRE---VRIDNDANCFALSEAWDPEFRTYPTVLGL 128 (256)
T ss_pred ecCcEECCCCEEEccCCCccc---------CCChHHHHHHHH---CCC---EEEEchhhHHHHHHHHhcCCCCCCcEEEE
Confidence 9999984 33 2223333454 378999999988 888 89999999999999884 46899999
Q ss_pred EEccccceeEEcccCcCCCCCCCCCCCCcEEEE
Q 019310 250 ILGTGTNAAYVERAHAIPKWHGLLPKSGEMVIN 282 (343)
Q Consensus 250 IlGTGtNa~y~e~~~~I~k~~~~~~e~~~miIN 282 (343)
.+|||.+++++.+.+.+.+.++.++|.+||.+.
T Consensus 129 ~lgtGiG~giv~~G~l~~G~~g~AGEiGh~~v~ 161 (256)
T PRK13311 129 ILGTGVGGGLIVNGSIVSGRNHITGEFGHFRLP 161 (256)
T ss_pred EECcCeEEEEEECCEEecCCCCCCccceeEEec
Confidence 999999999999999999988888999999983
No 11
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.64 E-value=4.1e-15 Score=142.59 Aligned_cols=155 Identities=18% Similarity=0.245 Sum_probs=123.4
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeee
Q 019310 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGftF 176 (343)
+++||+|||++|++++++.|+ +... .+++.|. .+.+++.+.|++.+.++....+ ....+|+++
T Consensus 2 ~lgidig~t~i~~~l~d~~g~---i~~~--~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLE---LQWE--ERVPTPR----DSYDAFLDAVCELVAEADQRFG--------CKGSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCc---EEEE--EEecCCC----cCHHHHHHHHHHHHHHHHhhcC--------CcceEEEeC
Confidence 799999999999999999875 4432 2344442 3578899999999988865432 123699999
Q ss_pred eeeeee-cc-CCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhccccc----CCCcEEEEE
Q 019310 177 SFPVRQ-TS-IASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVI 250 (343)
Q Consensus 177 SfPv~q-~~-i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~----~~~~~iglI 250 (343)
++|++. ++ +...++..|.. .++.+.|++.+ ++| |.+.||+.+..+++.|. +.++.+.+.
T Consensus 65 pG~vd~~~g~~~~~~~~~w~~---------~~l~~~l~~~~---~~p---V~ieNDa~aaalaE~~~g~~~~~~~~~~l~ 129 (303)
T PRK13310 65 PGMPETEDGTLYAANVPAASG---------KPLRADLSARL---GRD---VRLDNDANCFALSEAWDDEFTQYPLVMGLI 129 (303)
T ss_pred CCcccCCCCEEeccCcccccC---------CcHHHHHHHHH---CCC---eEEeccHhHHHHHHhhhccccCCCcEEEEE
Confidence 999984 33 23334445643 78999999988 888 89999999999999883 568999999
Q ss_pred EccccceeEEcccCcCCCCCCCCCCCCcEEEEe
Q 019310 251 LGTGTNAAYVERAHAIPKWHGLLPKSGEMVINM 283 (343)
Q Consensus 251 lGTGtNa~y~e~~~~I~k~~~~~~e~~~miINt 283 (343)
+|||++++++.+++.+.+.++.++|.|||.|+-
T Consensus 130 ~gtGiG~giv~~G~l~~G~~g~aGEiGH~~v~~ 162 (303)
T PRK13310 130 LGTGVGGGLVFNGKPISGRSYITGEFGHMRLPV 162 (303)
T ss_pred ecCceEEEEEECCEEeeCCCCccccccceeecc
Confidence 999999999999999999888888999999863
No 12
>PRK09698 D-allose kinase; Provisional
Probab=99.62 E-value=8e-15 Score=140.37 Aligned_cols=164 Identities=16% Similarity=0.201 Sum_probs=124.5
Q ss_pred cccEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeee
Q 019310 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (343)
Q Consensus 94 ~G~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lG 173 (343)
.+.+++||+|||++|+++++++|+ ++.. ..++.|.. .+.+ .++.+++.|.+++++.+ .+...+|
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~---i~~~--~~~~~~~~---~~~~-~~~~l~~~i~~~~~~~~-------~~i~gig 66 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGE---ILHC--EKKRTAEV---IAPD-LVSGLGEMIDEYLRRFN-------ARCHGIV 66 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCC---EEEE--EEeCCccc---cchH-HHHHHHHHHHHHHHHcC-------CCeeEEE
Confidence 567999999999999999999876 4422 23444422 2333 49999999999998754 2468899
Q ss_pred eeeeeeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhccccc---CCCcEEEEE
Q 019310 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH---NKDAIAAVI 250 (343)
Q Consensus 174 ftFSfPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~---~~~~~iglI 250 (343)
+.+++|++..+ +.++ ++..+..++..+.++.+.|++++ ++| |.+.||+.+.++++.+. ++++.+.+.
T Consensus 67 ia~pG~vd~~~---g~i~-~~~~~~~~~~~~~~l~~~l~~~~---~~p---v~v~NDa~aaa~~E~~~~~~~~~~~~~v~ 136 (302)
T PRK09698 67 MGFPALVSKDR---RTVI-STPNLPLTALDLYDLADKLENTL---NCP---VFFSRDVNLQLLWDVKENNLTQQLVLGAY 136 (302)
T ss_pred EeCCcceeCCC---CEEE-ecCCCCccccccCCHHHHHHHHh---CCC---EEEcchHhHHHHHHHHhcCCCCceEEEEE
Confidence 99999998422 2221 11112111233488999999988 888 89999999999988753 456899999
Q ss_pred EccccceeEEcccCcCCCCCCCCCCCCcEEEEe
Q 019310 251 LGTGTNAAYVERAHAIPKWHGLLPKSGEMVINM 283 (343)
Q Consensus 251 lGTGtNa~y~e~~~~I~k~~~~~~e~~~miINt 283 (343)
+|||.+++++.+++.+.+.++.++|.|||.++-
T Consensus 137 lgtGIG~giv~~G~~~~G~~g~agEiGh~~v~~ 169 (302)
T PRK09698 137 LGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGD 169 (302)
T ss_pred ecCceEEEEEECCEEeeCCCCCccccCceEeeC
Confidence 999999999999999999888888999999864
No 13
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=99.61 E-value=1.3e-14 Score=139.75 Aligned_cols=165 Identities=22% Similarity=0.376 Sum_probs=127.3
Q ss_pred ccccEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeee
Q 019310 93 EKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (343)
Q Consensus 93 E~G~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~l 172 (343)
+...+|+||+|||+++++++++.|+ +... +..+.|... ..+++.+-|++.++++++.+. . ....+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~---~l~~--~~~~~~~~~---~~~~~~~~i~~~i~~~~~~~~-~------~~~~i 68 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGE---ILLR--ERIPTPTPD---PEEAILEAILALVAELLKQAQ-G------RVAII 68 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCc---EEEE--EEEecCCCC---chhHHHHHHHHHHHHHHHhcC-C------cCceE
Confidence 4567999999999999999999886 4322 244444432 226899999999999998764 1 12345
Q ss_pred eeeeeeeee--ecc-CCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhccccc----CCCc
Q 019310 173 GFTFSFPVR--QTS-IASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDA 245 (343)
Q Consensus 173 GftFSfPv~--q~~-i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~----~~~~ 245 (343)
|+.++.|.. ... +.....+.|.. +.|+.+.|++.+ ++| |.|.||+++..++++|. +.++
T Consensus 69 GIgi~~pg~~~~~~~~~~~~~~~~~~--------~~~l~~~L~~~~---~~P---v~veNDan~aalaE~~~g~~~~~~~ 134 (314)
T COG1940 69 GIGIPGPGDVDNGTVIVPAPNLGWWN--------GVDLAEELEARL---GLP---VFVENDANAAALAEAWFGAGRGIDD 134 (314)
T ss_pred EEEeccceeccCCcEEeecCCCCccc--------cccHHHHHHHHH---CCC---EEEecHHHHHHHHHHHhCCCCCCCC
Confidence 555555555 322 33344344444 378999999999 899 89999999999999995 4578
Q ss_pred EEEEEEccccceeEEcccCcCCCCCCCCCCCCcEEEEecCC
Q 019310 246 IAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWG 286 (343)
Q Consensus 246 ~iglIlGTGtNa~y~e~~~~I~k~~~~~~e~~~miINtEwG 286 (343)
.+.+++|||++++++.+.+.+.+.++.++|.|||+++-...
T Consensus 135 ~~~i~~gtGIG~giv~~g~l~~G~~g~age~Gh~~v~~~g~ 175 (314)
T COG1940 135 VVYITLGTGIGGGIIVNGKLLRGANGNAGEIGHMVVDPDGE 175 (314)
T ss_pred EEEEEEccceeEEEEECCEEeecCCCccccccceEECCCCc
Confidence 99999999999999999999999888888899999998765
No 14
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=99.60 E-value=1.3e-14 Score=139.54 Aligned_cols=157 Identities=18% Similarity=0.279 Sum_probs=125.7
Q ss_pred EEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeee
Q 019310 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (343)
Q Consensus 98 LaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGftFS 177 (343)
|+||+|||++|++++++.|+ +... .+++.+ .+.+++++.|.+.|.+++++.+... .+...+|++++
T Consensus 1 lgidig~t~~~~~l~d~~g~---i~~~--~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~~~----~~i~gIgva~p 66 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGN---ILSK--WKVPTD-----TTPETIVDAIASAVDSFIQHIAKVG----HEIVAIGIGAP 66 (318)
T ss_pred CEEEeCCCEEEEEEECCCCC---EEEE--EEeCCC-----CCHHHHHHHHHHHHHHHHHhcCCCc----cceEEEEEecc
Confidence 58999999999999999875 4432 233333 2468899999999999998876432 35789999999
Q ss_pred eeeee-cc-CCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhccccc----CCCcEEEEEE
Q 019310 178 FPVRQ-TS-IASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVIL 251 (343)
Q Consensus 178 fPv~q-~~-i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~----~~~~~iglIl 251 (343)
.|++. ++ +.......|.+ .|+.+.|++.+ ++| |.+.||+.+..+++.+. +.++.+.+.+
T Consensus 67 G~vd~~~g~~~~~~~~~w~~---------~~l~~~l~~~~---~~p---v~v~NDa~~~alaE~~~g~~~~~~~~~~v~i 131 (318)
T TIGR00744 67 GPVNRQRGTVYFAVNLDWKQ---------EPLKEKVEARV---GLP---VVVENDANAAALGEYKKGAGKGARDVICITL 131 (318)
T ss_pred ccccCCCCEEEecCCCCCCC---------CCHHHHHHHHH---CCC---EEEechHHHHHHHHHHhcccCCCCcEEEEEe
Confidence 99984 33 22222236765 78999999888 888 89999999999999873 5688999999
Q ss_pred ccccceeEEcccCcCCCCCCCCCCCCcEEEEe
Q 019310 252 GTGTNAAYVERAHAIPKWHGLLPKSGEMVINM 283 (343)
Q Consensus 252 GTGtNa~y~e~~~~I~k~~~~~~e~~~miINt 283 (343)
|||++++++.+++.+.+.++.++|.+||.++-
T Consensus 132 gtGiG~giv~~G~~~~G~~g~agEiGh~~v~~ 163 (318)
T TIGR00744 132 GTGLGGGIIINGEIRHGHNGVGAEIGHIRMVP 163 (318)
T ss_pred CCccEEEEEECCEEeecCCCCCcccCceEeCC
Confidence 99999999999999998888888999999864
No 15
>PRK09557 fructokinase; Reviewed
Probab=99.58 E-value=3.1e-14 Score=136.51 Aligned_cols=154 Identities=18% Similarity=0.268 Sum_probs=120.1
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeee
Q 019310 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGftF 176 (343)
+|++|+|||++|++++++.|+ +... .+++.|. .+.+++.+.|++.+.+++.+.+ ....+|+++
T Consensus 2 ~lgidig~t~~~~~l~d~~g~---i~~~--~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~gIgi~~ 64 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGE---ELFR--KRLPTPR----DDYQQTIEAIATLVDMAEQATG--------QRGTVGVGI 64 (301)
T ss_pred EEEEEECCCcEEEEEECCCCC---EEEE--EEecCCC----CCHHHHHHHHHHHHHHHHhhcC--------CceEEEecC
Confidence 799999999999999999875 4422 2344332 2567889999998888875432 236799999
Q ss_pred eeeeee-cc-CCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhccccc----CCCcEEEEE
Q 019310 177 SFPVRQ-TS-IASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVI 250 (343)
Q Consensus 177 SfPv~q-~~-i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~----~~~~~iglI 250 (343)
++|++. ++ +.......|. +.++.+.|++.+ ++| |.+.||+.+..+++.+. ++++.+.+.
T Consensus 65 pG~vd~~~g~i~~~~~~~~~---------~~~l~~~l~~~~---~~p---v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~ 129 (301)
T PRK09557 65 PGSISPYTGLVKNANSTWLN---------GQPLDKDLSARL---NRE---VRLANDANCLAVSEAVDGAAAGKQTVFAVI 129 (301)
T ss_pred cccCcCCCCeEEecCCcccc---------CCCHHHHHHHHH---CCC---EEEccchhHHHHHHHHhcccCCCCcEEEEE
Confidence 999984 33 2222222223 378999999988 788 88999999999999773 467889999
Q ss_pred EccccceeEEcccCcCCCCCCCCCCCCcEEEE
Q 019310 251 LGTGTNAAYVERAHAIPKWHGLLPKSGEMVIN 282 (343)
Q Consensus 251 lGTGtNa~y~e~~~~I~k~~~~~~e~~~miIN 282 (343)
+|||++++++.+++.+.+.++..+|.|||.|+
T Consensus 130 igtGiG~giv~~G~l~~G~~g~aGEiGH~~v~ 161 (301)
T PRK09557 130 IGTGCGAGVAINGRVHIGGNGIAGEWGHNPLP 161 (301)
T ss_pred EccceEEEEEECCEEEecCCCCCcccCceecc
Confidence 99999999999999999888888899999985
No 16
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=99.55 E-value=2.2e-14 Score=126.72 Aligned_cols=154 Identities=22% Similarity=0.373 Sum_probs=122.1
Q ss_pred EEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeeee
Q 019310 99 ALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSF 178 (343)
Q Consensus 99 aIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGftFSf 178 (343)
+||+|+|.++++++++.|+ ++.. +++++| .+.+++++.|.+.+.+++.+.+. . .||+++|.
T Consensus 1 gidig~~~i~~~l~d~~g~---ii~~--~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~--------~-gIgi~~pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGE---IIYS--ESIPTP-----TSPEELLDALAELIERLLADYGR--------S-GIGISVPG 61 (179)
T ss_dssp EEEEESSEEEEEEEETTSC---EEEE--EEEEHH-----SSHHHHHHHHHHHHHHHHHHHTC--------E-EEEEEESS
T ss_pred CEEECCCEEEEEEECCCCC---EEEE--EEEECC-----CCHHHHHHHHHHHHHHHHhhccc--------c-cEEEeccc
Confidence 6999999999999999886 5533 345555 46789999999999999988752 2 89999999
Q ss_pred eeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhccccc----CCCcEEEEEEccc
Q 019310 179 PVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILGTG 254 (343)
Q Consensus 179 Pv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~----~~~~~iglIlGTG 254 (343)
|++... +.++.... .+..+.++.+.|++.+ ++| |.+.||+.+.++++.+. +.+..+.+.+|||
T Consensus 62 ~v~~~~---g~i~~~~~----~~~~~~~l~~~l~~~~---~~p---v~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G 128 (179)
T PF00480_consen 62 IVDSEK---GRIISSPN----PGWENIPLKEELEERF---GVP---VIIENDANAAALAEYWFGAAKDCDNFLYLYIGTG 128 (179)
T ss_dssp EEETTT---TEEEECSS----GTGTTCEHHHHHHHHH---TSE---EEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS
T ss_pred cCcCCC---CeEEecCC----CCcccCCHHHHhhccc---ceE---EEEecCCCcceeehhhcCccCCcceEEEEEeecC
Confidence 999643 22221111 2223389999999999 788 89999999999999872 4578999999999
Q ss_pred cceeEEcccCcCCCCCCCCCCCCcEEEEec
Q 019310 255 TNAAYVERAHAIPKWHGLLPKSGEMVINME 284 (343)
Q Consensus 255 tNa~y~e~~~~I~k~~~~~~e~~~miINtE 284 (343)
++++++.+.+.+.+.++.++|.+||.++-+
T Consensus 129 iG~~ii~~g~i~~G~~~~aGeigh~~~~~~ 158 (179)
T PF00480_consen 129 IGAGIIINGKIYRGSNGFAGEIGHMPVDPN 158 (179)
T ss_dssp EEEEEEETTEEETTTTS-TTGGGGSBSSTT
T ss_pred CCcceecccccccCCCccccceeeeeccCC
Confidence 999999999999888887788888887643
No 17
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=99.54 E-value=1.1e-13 Score=132.01 Aligned_cols=153 Identities=15% Similarity=0.192 Sum_probs=120.5
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeee
Q 019310 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGftF 176 (343)
+|++|+|||++|++++++.|+ +... ..++.|.. .+.+++.+.|++.+.++.. +...+|+++
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~---i~~~--~~~~~~~~---~~~~~~~~~i~~~i~~~~~-----------~~~~igi~~ 63 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQ---IRQR--RQIPTPAS---QTPEALRQALSALVSPLQA-----------QADRVAVAS 63 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCc---EEEE--EEecCCCC---CCHHHHHHHHHHHHHHhhh-----------cCcEEEEeC
Confidence 799999999999999999875 4422 23444431 3567789999988888752 124799999
Q ss_pred eeeeeecc---CCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhccccc---CCCcEEEEE
Q 019310 177 SFPVRQTS---IASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH---NKDAIAAVI 250 (343)
Q Consensus 177 SfPv~q~~---i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~---~~~~~iglI 250 (343)
++|++... +...++..|.. .|+.+.|++.+ ++| |.+.||+.+.++++.+. +.+..+.+.
T Consensus 64 pG~vd~~~~~~~~~~~~~~w~~---------~~l~~~l~~~~---~~p---v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ 128 (291)
T PRK05082 64 TGIINDGILTALNPHNLGGLLH---------FPLVQTLEQLT---DLP---TIALNDAQAAAWAEYQALPDDIRNMVFIT 128 (291)
T ss_pred cccccCCeeEEecCCCCccccC---------CChHHHHHHHh---CCC---EEEECcHHHHHHHHHHhcCCCCCCEEEEE
Confidence 99997322 12223435654 89999999888 888 89999999999999763 567899999
Q ss_pred EccccceeEEcccCcCCCCCCCCCCCCcEEEEe
Q 019310 251 LGTGTNAAYVERAHAIPKWHGLLPKSGEMVINM 283 (343)
Q Consensus 251 lGTGtNa~y~e~~~~I~k~~~~~~e~~~miINt 283 (343)
+|||.+++++.+++.+.+.++.++|.|||.|+-
T Consensus 129 ig~GiG~giv~~G~~~~G~~g~AGEiGh~~v~~ 161 (291)
T PRK05082 129 VSTGVGGGIVLNGKLLTGPGGLAGHIGHTLADP 161 (291)
T ss_pred ECCCcceEEEECCEEeeCCCCccccccceEecC
Confidence 999999999999999999888889999999864
No 18
>PRK12408 glucokinase; Provisional
Probab=99.41 E-value=6.7e-13 Score=129.95 Aligned_cols=153 Identities=22% Similarity=0.221 Sum_probs=98.2
Q ss_pred CCccccc-EEEEeeCCceEEEEEEEeCCCc---ceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCC
Q 019310 90 TGDEKGL-FYALDLGGTNFRVLRVQLGGRE---GRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVS 165 (343)
Q Consensus 90 ~G~E~G~-fLaIDlGGTNlRv~lV~l~g~~---~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~ 165 (343)
++-|++. ||++|+||||+|+++++.++.. ..+. ..+++ |.. ..+.+. +.|.+|+++ .
T Consensus 10 ~~~~~~~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~--~~~~~--~t~----~~~~~~----~~i~~~~~~-~------ 70 (336)
T PRK12408 10 VAVPRPESFVAADVGGTHVRVALVCASPDAAKPVELL--DYRTY--RCA----DYPSLA----AILADFLAE-C------ 70 (336)
T ss_pred ccCcccccEEEEEcChhhhheeEEeccCCcccccccc--ceeEe--cCC----CccCHH----HHHHHHHhc-C------
Confidence 4556664 9999999999999999875541 0111 11222 322 112333 335566654 1
Q ss_pred CCCeeeeeeeeeee-eeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhccccc---
Q 019310 166 PGRQRELGFTFSFP-VRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH--- 241 (343)
Q Consensus 166 ~~~~l~lGftFSfP-v~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~--- 241 (343)
.+...+|+++++| ++...+...++ .|.. +.+.|++.+ ++ ..|.++||..+..+++.+.
T Consensus 71 -~~~~~igIg~pG~~~~~g~v~~~nl-~w~~-----------~~~~l~~~~---~~--~~V~l~ND~naaa~gE~~~~~~ 132 (336)
T PRK12408 71 -APVRRGVIASAGYALDDGRVITANL-PWTL-----------SPEQIRAQL---GL--QAVHLVNDFEAVAYAAPYMEGN 132 (336)
T ss_pred -CCcCEEEEEecCCceECCEEEecCC-CCcc-----------CHHHHHHHc---CC--CeEEEeecHHHHHcccccCCHh
Confidence 1346799999998 54322223344 4631 346666666 65 2389999999999999886
Q ss_pred ----------CC-CcEEEEEEccccceeEEcccCcCCCCCCCCCCCCcEEE
Q 019310 242 ----------NK-DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVI 281 (343)
Q Consensus 242 ----------~~-~~~iglIlGTGtNa~y~e~~~~I~k~~~~~~e~~~miI 281 (343)
+. ...+.+++|||.+++++.+.+ .+..+..+|.|||.+
T Consensus 133 ~~~~~~g~~~~~~~~~~~i~~GTGiGggivi~g~--~g~~~~agE~GH~~~ 181 (336)
T PRK12408 133 QVLQLSGPAQAAAGPALVLGPGTGLGAALWIPNG--GRPVVLPTEAGQAAL 181 (336)
T ss_pred HeeeecCCCCCCCCcEEEEECCCcceEEEEEcCC--CceeeecCccccccC
Confidence 22 578999999999999998876 444444556666655
No 19
>PRK00292 glk glucokinase; Provisional
Probab=99.38 E-value=2.2e-12 Score=124.72 Aligned_cols=147 Identities=19% Similarity=0.260 Sum_probs=98.7
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHh-cCCCCCCCCCCeeeeee
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVAT-EGEGFHVSPGRQRELGF 174 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~-~~~~~~~~~~~~l~lGf 174 (343)
.+|++|+|||++|++++++.+. .+.. .++++.+. .+. +.+.+.+++++ .+ .+...+|+
T Consensus 3 ~~lgiDIGgT~i~~~l~~~~~~--~~~~--~~~~~~~~------~~~----~~~~l~~~l~~~~~-------~~~~gigI 61 (316)
T PRK00292 3 PALVGDIGGTNARFALCDWANG--EIEQ--IKTYATAD------YPS----LEDAIRAYLADEHG-------VQVRSACF 61 (316)
T ss_pred eEEEEEcCccceEEEEEecCCC--ceee--eEEEecCC------CCC----HHHHHHHHHHhccC-------CCCceEEE
Confidence 4899999999999999997443 1232 13343331 122 44555566654 22 13568999
Q ss_pred eeeeeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhccccc-------------
Q 019310 175 TFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH------------- 241 (343)
Q Consensus 175 tFSfPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~------------- 241 (343)
.+++|++...+...++ .|.. + .+.|++.+ ++ ..|.|.||+.+..+++.+.
T Consensus 62 g~pG~vd~~~i~~~n~-~w~~----------~-~~~l~~~~---~~--p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~ 124 (316)
T PRK00292 62 AIAGPVDGDEVRMTNH-HWAF----------S-IAAMKQEL---GL--DHLLLINDFTAQALAIPRLGEEDLVQIGGGEP 124 (316)
T ss_pred EEeCcccCCEEEecCC-Cccc----------C-HHHHHHHh---CC--CeEEEEecHHHHHcccccCCHhheeEeCCCCC
Confidence 9999998433333344 3641 2 36677766 65 2289999999999999751
Q ss_pred -CCCcEEEEEEccccceeEEcccCcCCCCCCCCCCCCcEEEE
Q 019310 242 -NKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVIN 282 (343)
Q Consensus 242 -~~~~~iglIlGTGtNa~y~e~~~~I~k~~~~~~e~~~miIN 282 (343)
+.+..+.+.+|||.+++++.+. ..+..+..+|.|||.++
T Consensus 125 ~~~~~~~~v~~GTGiG~giv~~g--~~g~~g~agE~GH~~~~ 164 (316)
T PRK00292 125 VPGAPIAVIGPGTGLGVAGLVPV--DGRWIVLPGEGGHVDFA 164 (316)
T ss_pred CCCCcEEEEEcCCcceEEEEEec--CCceEEccCCcccccCC
Confidence 1367899999999999999886 55555556677777763
No 20
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.12 E-value=2.2e-10 Score=121.09 Aligned_cols=127 Identities=20% Similarity=0.291 Sum_probs=85.2
Q ss_pred cccEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeee
Q 019310 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (343)
Q Consensus 94 ~G~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lG 173 (343)
-|-+|++|+||||+|+++++-+|. +.. ..++|+.. ++.+.+.|.+++++.+. .....+|
T Consensus 17 ~~~~L~iDIGGT~ir~al~~~~g~---i~~----~~~~~t~~--------~~~~~~~i~~~l~~~~~------~~~~~ig 75 (638)
T PRK14101 17 DGPRLLADVGGTNARFALETGPGE---ITQ----IRVYPGAD--------YPTLTDAIRKYLKDVKI------GRVNHAA 75 (638)
T ss_pred CCCEEEEEcCchhheeeeecCCCc---ccc----eeEEecCC--------CCCHHHHHHHHHHhcCC------CCcceEE
Confidence 356999999999999999965543 332 22344421 24466677777765532 1357899
Q ss_pred eeeeeeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhcc--------cc----c
Q 019310 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGG--------RY----H 241 (343)
Q Consensus 174 ftFSfPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~--------~y----~ 241 (343)
+++++|++...+...++ .|. .++ +.|++.+ +++ +|.++||..+..+++ .+ +
T Consensus 76 ig~pGpVd~~~~~~~nl-~w~----------~~~-~~l~~~~---g~~--~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~ 138 (638)
T PRK14101 76 IAIANPVDGDQVRMTNH-DWS----------FSI-EATRRAL---GFD--TLLVVNDFTALAMALPGLTDAQRVQVGGGT 138 (638)
T ss_pred EEEecCccCCeeeecCC-CcE----------ecH-HHHHHHc---CCC--eEEEEchHHHHHcCCccCCHHHeEEeCCCC
Confidence 99999999544444454 573 134 6666666 653 589999999999995 23 2
Q ss_pred CCCcEEEEEEcccccee
Q 019310 242 NKDAIAAVILGTGTNAA 258 (343)
Q Consensus 242 ~~~~~iglIlGTGtNa~ 258 (343)
+.+..+.+++||||+.+
T Consensus 139 ~~~~~~~~~lGtGTGlG 155 (638)
T PRK14101 139 RRQNSVIGLLGPGTGLG 155 (638)
T ss_pred CCCCCcEEEEECCccce
Confidence 34567889987765555
No 21
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=99.09 E-value=2.7e-10 Score=110.40 Aligned_cols=146 Identities=17% Similarity=0.234 Sum_probs=88.6
Q ss_pred EEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeee
Q 019310 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (343)
Q Consensus 98 LaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGftFS 177 (343)
|++|+||||+|+++++.++. ++... +. +.. +.++.+.+.|.+++++.+.... ......|+..+
T Consensus 1 l~~DIGGT~i~~glvd~~g~---~l~~~-~~---~~~-------~~~~~l~~~i~~~l~~~~~~~~---~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPG---EISQA-KT---YSG-------LDFPSLEAVVRVYLEEHKVELK---DPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEecCCC---ceeee-EE---Eec-------CCCCCHHHHHHHHHHhcccccC---CCcCeEEEEEe
Confidence 68999999999999987553 22111 11 111 1245566666667665432110 12345899999
Q ss_pred eeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhcc--------ccc----CCCc
Q 019310 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGG--------RYH----NKDA 245 (343)
Q Consensus 178 fPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~--------~y~----~~~~ 245 (343)
+|++...+...++ .|. .++. .|++.+ ++ ..|.|.||..+..+++ .+. ..+.
T Consensus 64 Gpv~~~~v~~~nl-~w~----------~~~~-~l~~~~---g~--~~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~ 126 (316)
T TIGR00749 64 CPITGDWVAMTNH-TWA----------FSIA-ELKQNL---GF--SHLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEG 126 (316)
T ss_pred CcccCCEEEecCC-CCe----------eCHH-HHHHhc---CC--CeEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCC
Confidence 9996533344444 573 3453 666655 65 1389999999999998 553 3466
Q ss_pred EEEEEEccccceeE--Ec---ccCcCCCCCCCCCCCCcEEE
Q 019310 246 IAAVILGTGTNAAY--VE---RAHAIPKWHGLLPKSGEMVI 281 (343)
Q Consensus 246 ~iglIlGTGtNa~y--~e---~~~~I~k~~~~~~e~~~miI 281 (343)
.+.+++||||+.+. +. +.+.+ ...+|.|||.+
T Consensus 127 ~~~v~lGtGtG~G~~~vi~~~~g~l~----~~agE~GH~~~ 163 (316)
T TIGR00749 127 KPIAILGAGTGLGVAHLIHQVDGRWV----VLPGEGGHVDF 163 (316)
T ss_pred CcEEEEecCCCceeeEEEEcCCCCEE----ECCCCcccccC
Confidence 78999966666654 55 43332 22345666655
No 22
>PTZ00288 glucokinase 1; Provisional
Probab=98.76 E-value=3e-07 Score=92.50 Aligned_cols=184 Identities=17% Similarity=0.182 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhhcCCCCCcceeeecccccCCCCcccccEEEEeeCCceEEEEEEEeC--CCcceeEEEeeEEeecCCCcc
Q 019310 59 ADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLG--GREGRVVKQEFEEVSIPPHLM 136 (343)
Q Consensus 59 ~~~f~~em~~gL~~~~~s~l~MlPs~v~~lP~G~E~G~fLaIDlGGTNlRv~lV~l~--g~~~~i~~~~~~~~~Ip~~~~ 136 (343)
...+.+++.+-|+++. +|- .. +++|++|+||||.|+++.++. +.+. .. . ..++++ ++
T Consensus 5 ~~~~~~~~~~~~~~~~--------~~~-~~------~~~~~~DiGgt~~R~~~~~~~~~~~~~-~~-~--~~~~~~--~~ 63 (405)
T PTZ00288 5 DEIFLEQLAEELKTDA--------SWS-SG------PIFVGCDVGGTNARVGFAREVQHDDSG-VH-I--IYVRFN--VT 63 (405)
T ss_pred hHHHHHHHHHHhccCc--------ccc-cC------CeEEEEEecCCceEEEEEeccCCCCCc-ee-E--EEEecc--cc
Confidence 3456677777777642 121 12 358999999999999999983 2211 11 1 234444 12
Q ss_pred cCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeeeeeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHH
Q 019310 137 TGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAME 216 (343)
Q Consensus 137 ~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGftFSfPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~ 216 (343)
..+..++.+++++-+....+....- ..+....|...+|+....+ .|.+.+|...+.+++. ...+
T Consensus 64 ~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~iAvAGPV~~~~~-~~~~~~~~~~~~lTNl-pw~i--------- 127 (405)
T PTZ00288 64 KTDIRELLEFFDEVLQKLKKNLSFI-----QRVAAGAISVPGPVTGGQL-AGPFNNLKGIARLTDY-PVEL--------- 127 (405)
T ss_pred cccHHHHHHHHHHHHHHHHhcCccc-----cCcCeEEEEEeCceeCCEe-eccccccccccccCCC-Cchh---------
Confidence 2455678888888777765532110 1334457888899964221 2345677766666553 1111
Q ss_pred HcCCCceEEEEEechHHHHhccccc--------------------------------CCCcEEEEEEccccceeEEcccC
Q 019310 217 RIGLDMRVAALVNDTIGTLAGGRYH--------------------------------NKDAIAAVILGTGTNAAYVERAH 264 (343)
Q Consensus 217 r~~l~v~vvaIvNDTvatlla~~y~--------------------------------~~~~~iglIlGTGtNa~y~e~~~ 264 (343)
++.+-+.++||=.|..++.... .....+.+.+|||.++|++.+..
T Consensus 128 ---~~~~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~~~~g~~~~~~~~~Vlg~GTGLG~alli~~~ 204 (405)
T PTZ00288 128 ---FPPGRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGKPAGSVIGRGRCMVLAPGTGLGSSLIHYVG 204 (405)
T ss_pred ---cCCCeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCCCCCcccCCCCCEEEEEeccceeEEEEECCe
Confidence 4455589999988887776431 22345899999999999999887
Q ss_pred cCCCCCCCCCCCCcEEEE
Q 019310 265 AIPKWHGLLPKSGEMVIN 282 (343)
Q Consensus 265 ~I~k~~~~~~e~~~miIN 282 (343)
.+.++.....|.|||.++
T Consensus 205 l~~G~~~~agEgGHv~~~ 222 (405)
T PTZ00288 205 VSDQYIVIPLECGHLSIS 222 (405)
T ss_pred ecCCcccccccccceeec
Confidence 777777767788888774
No 23
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=98.68 E-value=4.7e-08 Score=78.18 Aligned_cols=98 Identities=15% Similarity=0.218 Sum_probs=64.7
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeee
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGft 175 (343)
.+||||+|||++++++++-+|. +.. ...+|.. .+.+++++.+.+.+.++ ++..+|+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~---~~~----~~~~~~~---~~~~~~~~~l~~~i~~~-------------~~~~i~Ig 58 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGK---LAD----PLEVIPR---TNKEADAARLKKLIKKY-------------QPDLIVIG 58 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCC---Eec----CEEEEEe---cCcchHHHHHHHHHHHh-------------CCCEEEEe
Confidence 4899999999999999987664 332 1222221 13456777777766553 13468888
Q ss_pred eeeeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhc
Q 019310 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAG 237 (343)
Q Consensus 176 FSfPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla 237 (343)
+|+|++..- ...|. .++.+.|++.+ ++| +.+.||+.+|..+
T Consensus 59 ~pg~v~g~~-----~~~~~----------~~l~~~l~~~~---~~p---v~~~nDa~st~~a 99 (99)
T smart00732 59 LPLNMNGTA-----SRETE----------EAFAELLKERF---NLP---VVLVDERLATVYA 99 (99)
T ss_pred CCcCCCCCc-----CHHHH----------HHHHHHHHHhh---CCc---EEEEeCCcccccC
Confidence 999884211 11231 46777777765 788 8999999988653
No 24
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=97.87 E-value=1.9e-05 Score=77.14 Aligned_cols=178 Identities=21% Similarity=0.228 Sum_probs=100.8
Q ss_pred EEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeee
Q 019310 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (343)
Q Consensus 98 LaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGftFS 177 (343)
|+-|+||||.|+++++..+....+. ..++|+- .+...|.+.|.+.+.+. ..+. .++....|...
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~--~~~~~~~------~~~~s~~~~l~~~l~~~--~~~~------~~p~~~~iavA 64 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLI--DIRRYPS------ADFPSFEDALADYLAEL--DAGG------PEPDSACIAVA 64 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEE--EEEEEEG------CCCCHHHHHHHHHHHHT--CHHH------TCEEEEEEEES
T ss_pred CeEEeCcccEEEEEEEcCCCCcccc--ccEEEec------CCcCCHHHHHHHHHHhc--ccCC------CccceEEEEEe
Confidence 6789999999999999876531122 1123332 33445555555544432 1111 23556889999
Q ss_pred eeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhccccc-------------CC-
Q 019310 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH-------------NK- 243 (343)
Q Consensus 178 fPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~-------------~~- 243 (343)
+|++.. +..+.+|. +.++ .+.|++.| ++ +-+.++||=.|..++.-.. .+
T Consensus 65 GPV~~~---~~~lTN~~--W~i~-------~~~l~~~l---g~--~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~ 127 (316)
T PF02685_consen 65 GPVRDG---KVRLTNLP--WTID-------ADELAQRL---GI--PRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPG 127 (316)
T ss_dssp S-EETT---CEE-SSSC--CEEE-------HHHCHCCC---T---TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTT
T ss_pred cCccCC---EEEecCCC--cccc-------HHHHHHHh---CC--ceEEEEcccchheeccCCCCHHHeeeccCCCCCCC
Confidence 999963 44444331 1111 12222222 44 3489999988887766441 12
Q ss_pred CcEEEEEEccccceeEEcccCcCCCCCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhHhc-cCCCCCcccceeecccc
Q 019310 244 DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDT-ESLNPGEQVAILMCQFH 321 (343)
Q Consensus 244 ~~~iglIlGTGtNa~y~e~~~~I~k~~~~~~e~~~miINtEwG~f~~~~lp~T~~D~~lD~-~s~nPG~q~fEKmiSG~ 321 (343)
...+-+=.|||.|.|++.+. ..+..++-||.|.- +.-|.++.+..+=+ -...-|.=.+|..+||+
T Consensus 128 ~~~~Vig~GTGLG~a~l~~~-----------~~~~~v~~sEgGH~--~fap~~~~e~~l~~~l~~~~~~vs~E~vlSG~ 193 (316)
T PF02685_consen 128 GPRAVIGPGTGLGVALLVPD-----------GDGYYVLPSEGGHV--DFAPRTDEEAELLRFLRRRYGRVSVERVLSGR 193 (316)
T ss_dssp S-EEEEEESSSEEEEEEEEE-----------TTEEEEEEE-GGGS--B---SSHHHHHHHHHHHHHCTS-BHHHCSSHH
T ss_pred CcEEEEEcCCCcEEEEEEec-----------CCceEeCCCccccc--cCCCCCHHHHHHHHHHHHhcCCceeEeecchh
Confidence 33344447999999999874 23556999999975 34677877654421 11122666899999998
No 25
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.57 E-value=0.0025 Score=60.17 Aligned_cols=137 Identities=20% Similarity=0.200 Sum_probs=85.4
Q ss_pred EEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeee
Q 019310 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (343)
Q Consensus 98 LaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGftFS 177 (343)
|+||-|||..|+++++.+|+ ++.. ...-|......+.++..+.|.+-+.+.+++.+... .+.-.+.++.+
T Consensus 1 lGIDgGgTkt~~vl~d~~g~---il~~---~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~----~~i~~~~~g~a 70 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGN---ILGR---GKGGGANYNSVGFEEAMENIKEAIEEALSQAGLSP----DDIAAICIGAA 70 (271)
T ss_dssp EEEEECSSEEEEEEEETTSE---EEEE---EEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTST----TCCCEEEEEEE
T ss_pred CEEeeChheeeeEEEeCCCC---EEEE---EEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCc----cccceeeeeEe
Confidence 79999999999999998765 4422 23345544434467788888899999998876542 12122222222
Q ss_pred eeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccccce
Q 019310 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNA 257 (343)
Q Consensus 178 fPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~~~~~~iglIlGTGtNa 257 (343)
+-=.+ + +..+...+.+.. -+.+.||+...+.+..- +.-|-+|-|||+++
T Consensus 71 G~~~~------------------~----~~~~~~~~~~~~------~v~~~~Da~~al~~~~~---~~giv~I~GTGS~~ 119 (271)
T PF01869_consen 71 GYGRA------------------G----DEQEFQEEIVRS------EVIVVNDAAIALYGATA---EDGIVVIAGTGSIA 119 (271)
T ss_dssp EEEET------------------T----TTTHHHHHHHHH------EEEEEEHHHHHHHHHST---SSEEEEEESSSEEE
T ss_pred eecCc------------------c----cccchhhcceEE------EEEEEHHHHHHhCCCCC---CcEEEEEcCCCceE
Confidence 21111 1 011111222222 38999999988877654 46789999999999
Q ss_pred eEEcccCcCCCCCCCCCCCCcEEEEecCCCc
Q 019310 258 AYVERAHAIPKWHGLLPKSGEMVINMEWGNF 288 (343)
Q Consensus 258 ~y~e~~~~I~k~~~~~~e~~~miINtEwG~f 288 (343)
..+.+ .+++.-.--||.+
T Consensus 120 ~~~~~-------------~g~~~r~gG~G~~ 137 (271)
T PF01869_consen 120 YGRDR-------------DGRVIRFGGWGHC 137 (271)
T ss_dssp EEEET-------------TSEEEEEEESCTT
T ss_pred EEEEc-------------CCcEEEeCCCCCC
Confidence 88852 3455656668875
No 26
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=97.44 E-value=0.0011 Score=65.73 Aligned_cols=165 Identities=10% Similarity=0.109 Sum_probs=90.0
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecC-CCcccCCchHHHHHHH---HHHHHHHHhcCCCCCCCCCCeeee
Q 019310 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIP-PHLMTGSSHELFDYIA---AALAKFVATEGEGFHVSPGRQREL 172 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip-~~~~~~~~~~lFd~IA---~~I~~fl~~~~~~~~~~~~~~l~l 172 (343)
.|+|..|||++|+++++-++. +... ...-+ +++ +.++.+.+.++ +.|.+++++++... .+...+
T Consensus 2 il~in~Gsts~k~alf~~~~~---~~~~---~~~~~~~~~--~~~~~~~~q~~~r~~~i~~~l~~~~~~~----~~i~av 69 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERP---LFEE---TLRHSVEEL--GRFKNVIDQFEFRKQVILQFLEEHGISI----SKLDAV 69 (351)
T ss_pred EEEEecCchhheEEEEeCCCc---eeee---eecCCHHHh--cccccHHHHHHHHHHHHHHHHHHcCCCc----ccccEE
Confidence 699999999999999977653 3321 11112 222 35567788888 88999998876432 223333
Q ss_pred eeeeeeeee-ecc-C---CceEEeeeccccccCCCCCCcHHHHHHHHHHH-cCCCceEEEEEec---------hHHHHhc
Q 019310 173 GFTFSFPVR-QTS-I---ASGDLIKWTKGFSIEDTVGEDVVGELTKAMER-IGLDMRVAALVND---------TIGTLAG 237 (343)
Q Consensus 173 GftFSfPv~-q~~-i---~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r-~~l~v~vvaIvND---------Tvatlla 237 (343)
..-.+|++ .++ . +...+-.-.+....... .++..++-..+.+ .++| .++.|| +..+.+.
T Consensus 70 -~~RgG~~~~v~Gg~~~v~~~~~~~l~~~~~~~~~--hn~~~~~~~~~~~~~~~p---~~vfDt~fh~~~~~~a~~~alp 143 (351)
T TIGR02707 70 -VGRGGLLKPIPGGTYLVNEAMLEDLKSGKRGEHA--SNLGAIIANELADELNIP---AYIVDPVVVDEMEDVARISGLP 143 (351)
T ss_pred -EECCCCCceecceeEEECHHHHHHHHhcCCCCCC--CCHHHHHHHHHHHHcCCC---EEEcCChhhhcChHHHHHhccc
Confidence 22233443 211 0 00000000000000000 1233333322222 3566 357777 5555554
Q ss_pred cc------------c----------cC--CCcEEEEEEccccceeEEcccCcCCCCCCCCCCCCcE
Q 019310 238 GR------------Y----------HN--KDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEM 279 (343)
Q Consensus 238 ~~------------y----------~~--~~~~iglIlGTGtNa~y~e~~~~I~k~~~~~~e~~~m 279 (343)
+. | ++ ....|.+.||||+++|.+.+++.+.+..+..+|.+.|
T Consensus 144 e~~RrygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hLGtGig~~ai~~Gk~vdgs~G~agEg~~~ 209 (351)
T TIGR02707 144 EIERKSIFHALNQKAVARRIAKELGKRYEEMNLIVAHMGGGISVAAHRKGRVIDVNNALDGEGPFS 209 (351)
T ss_pred hhhhhhchhhhhHHHHHHHHHHHcCCCcccCCEEEEEeCCCceeeeEECCEEEEcCCCCCCcCCcc
Confidence 22 1 22 2389999999999999999999887776655554444
No 27
>PRK13318 pantothenate kinase; Reviewed
Probab=97.37 E-value=0.00019 Score=67.89 Aligned_cols=193 Identities=18% Similarity=0.163 Sum_probs=92.0
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeee
Q 019310 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGftF 176 (343)
+|+||+|||++|+++++ +++ +. .++++|.... .+.+++.+ .+.++++..+... .+...+|+++
T Consensus 2 iL~IDIGnT~iK~al~d-~g~---i~----~~~~~~t~~~-~~~~~~~~----~l~~l~~~~~~~~----~~i~~I~iss 64 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GGK---LV----AHWRISTDSR-RTADEYGV----WLKQLLGLSGLDP----EDITGIIISS 64 (258)
T ss_pred EEEEEECCCcEEEEEEE-CCE---EE----EEEEEeCCCC-CCHHHHHH----HHHHHHHHcCCCc----ccCceEEEEE
Confidence 69999999999999998 432 43 2455666543 34455554 4455555544321 1233444443
Q ss_pred eeeeeeccCCceEEeeeccccccCCCCCCc-HHHHHHHHHHHcCCCceEEEEEec--------hHHHHhcccccCCCcEE
Q 019310 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGED-VVGELTKAMERIGLDMRVAALVND--------TIGTLAGGRYHNKDAIA 247 (343)
Q Consensus 177 SfPv~q~~i~~g~Li~WtKgF~~~~~~G~d-v~~lL~~al~r~~l~v~vvaIvND--------Tvatlla~~y~~~~~~i 247 (343)
=-|-....+. ..+..|-+ . .. +....+..+ +++ +++.|| ..+..+.+.| +...+
T Consensus 65 Vvp~~~~~~~-~~~~~~~~---~-----~~~~~~~~~~~~---gl~---~~y~np~~lG~DR~a~~~aa~~~~--~~~~i 127 (258)
T PRK13318 65 VVPSVMHSLE-RMCRKYFN---I-----EPLVVVGPGVKT---GIN---IKVDNPKEVGADRIVNAVAAYELY--GGPLI 127 (258)
T ss_pred ecCchHHHHH-HHHHHHhC---C-----CCeEEECCCcCC---CCc---eecCChhhcchHHHHHHHHHHHHc--CCCEE
Confidence 1121110000 00001100 0 00 000011111 444 677887 4444444445 34688
Q ss_pred EEEEccccceeEEcccC-cCCCCCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhHhccCCCCCcccceeecccch--hH
Q 019310 248 AVILGTGTNAAYVERAH-AIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQVAILMCQFHV--TI 324 (343)
Q Consensus 248 glIlGTGtNa~y~e~~~-~I~k~~~~~~e~~~miINtEwG~f~~~~lp~T~~D~~lD~~s~nPG~q~fEKmiSG~~--~~ 324 (343)
-+-+||++...++.+.. .+.++=. |.. .+-.++=.. +...+|..+.+. ....||...-|-+-||.+ ..
T Consensus 128 vid~GTA~t~d~v~~~g~~~GG~I~--PG~-~l~~~aL~~--~ta~Lp~~~~~~----~~~~~g~~T~~ai~~G~~~~~~ 198 (258)
T PRK13318 128 VVDFGTATTFDVVSAKGEYLGGVIA--PGI-NISADALFQ--RAAKLPRVEITK----PDSVIGKNTVEAMQSGIYYGYV 198 (258)
T ss_pred EEEcCCceEEEEEcCCCcEEEEEEC--ccH-HHHHHHHHh--hhhcCCCCcCCC----CCccCCCCHHHHHHHHHHHHHH
Confidence 99999999999994432 2111100 000 000000000 011255443222 234578888899999985 45
Q ss_pred Hhhhhhcc
Q 019310 325 AYIDSFID 332 (343)
Q Consensus 325 ~~~~~~~~ 332 (343)
..++.+++
T Consensus 199 ~~i~~~~~ 206 (258)
T PRK13318 199 GLVEGIVK 206 (258)
T ss_pred HHHHHHHH
Confidence 55666654
No 28
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=97.34 E-value=0.00093 Score=62.06 Aligned_cols=93 Identities=14% Similarity=0.272 Sum_probs=57.9
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCC---cccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeee
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPH---LMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~---~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~l 172 (343)
+||+||+|.|++|+++++.+|+ ++...+..++.... ....+.+++++.+.+++++.+++.+... .++..|
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~---iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~----~~I~aI 73 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGK---IVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDP----EQIKAI 73 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSC---EEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCG----GGEEEE
T ss_pred CEEEEEEcccceEEEEEeCCCC---EEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCccc----ceeEEE
Confidence 5899999999999999996665 55444444433322 2234689999999999999998874322 345555
Q ss_pred eeee----eeeeeeccCCceEEeeecc
Q 019310 173 GFTF----SFPVRQTSIASGDLIKWTK 195 (343)
Q Consensus 173 GftF----SfPv~q~~i~~g~Li~WtK 195 (343)
|++- -.++|+.+-.-...+.|..
T Consensus 74 ~is~~~~~~v~~D~~~~pl~~~i~w~D 100 (245)
T PF00370_consen 74 GISGQGHGLVLLDKDGKPLRPAILWMD 100 (245)
T ss_dssp EEEE-SSEEEEEETTSSBSSCEE-TT-
T ss_pred EeccccCCcceeccccccccccccccc
Confidence 5543 1356655522223445654
No 29
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.012 Score=56.83 Aligned_cols=143 Identities=20% Similarity=0.184 Sum_probs=89.3
Q ss_pred cccEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeee
Q 019310 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (343)
Q Consensus 94 ~G~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lG 173 (343)
.|.|.++|=|+|.-|+.+|+..++ +.-.. ..--+..-....+..-+.|++.|.+...+.+.... +..-.||
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~---~~~~a---~~~~Tnh~~ig~~~~~~rie~~i~~A~~k~g~d~~---~~lr~lg 72 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGT---ILGRA---VGGGTNHWLIGSTTCASRIEDMIREAKEKAGWDKK---GPLRSLG 72 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCC---EeeEe---eccccccccCCchHHHHHHHHHHHHHHhhcCCCcc---Cccceee
Confidence 478999999999999999987665 22111 11111111122456777888888887777665431 2245677
Q ss_pred eeeeeeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhcccccCCCcEEEEEEcc
Q 019310 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGT 253 (343)
Q Consensus 174 ftFSfPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~~~~~~iglIlGT 253 (343)
+.+|.- +|.. .++++++.|++.+ .--.+=..|.||+.+++++. +.....=|-+|-||
T Consensus 73 L~lSg~-d~e~------------------~~~~lv~~~R~~f---ps~ae~~~v~sDa~~sl~a~-t~g~~~GiVLiaGT 129 (336)
T KOG1794|consen 73 LGLSGT-DQED------------------KNRKLVTEFRDKF---PSVAENFYVTSDADGSLAAA-TPGGEGGIVLIAGT 129 (336)
T ss_pred eecccC-Cchh------------------HHHHHHHHHHHhc---cchhheeeeehhHHHHHhhc-CCCCCCcEEEEecC
Confidence 777763 2311 1244555555544 11134489999999999987 44445568899999
Q ss_pred ccceeEEcccCcCCC
Q 019310 254 GTNAAYVERAHAIPK 268 (343)
Q Consensus 254 GtNa~y~e~~~~I~k 268 (343)
|+||--+.+-....+
T Consensus 130 gs~crl~~~DGs~~~ 144 (336)
T KOG1794|consen 130 GSNCRLVNPDGSEKG 144 (336)
T ss_pred CceeEEECCCCCccC
Confidence 999866655443333
No 30
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=97.09 E-value=0.0021 Score=65.46 Aligned_cols=80 Identities=18% Similarity=0.290 Sum_probs=57.2
Q ss_pred EEEeeCCceEEEEEEEeCCCcceeEEEeeEEeec--C-CCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeee
Q 019310 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (343)
Q Consensus 98 LaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~I--p-~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGf 174 (343)
|+||+|.|++|++++++.|+ ++...+..++. | +.....+.+++++.+++++++++++.+... .+...||+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~----~~I~gIgv 73 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGE---VIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMG----QDIKGIGI 73 (481)
T ss_pred CceeecCcceEEEEECCCCC---EEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCc----ccEEEEEE
Confidence 58999999999999998876 55443333331 1 111234678899999999999998876432 46778888
Q ss_pred e--eeeee--eecc
Q 019310 175 T--FSFPV--RQTS 184 (343)
Q Consensus 175 t--FSfPv--~q~~ 184 (343)
+ .+.++ ++.+
T Consensus 74 s~~~~g~v~~d~~g 87 (481)
T TIGR01312 74 SGQMHGLVLLDANG 87 (481)
T ss_pred ecCCceeEEECCCc
Confidence 8 77877 6544
No 31
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=96.71 E-value=0.019 Score=55.63 Aligned_cols=183 Identities=16% Similarity=0.153 Sum_probs=108.2
Q ss_pred ccEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeee
Q 019310 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (343)
Q Consensus 95 G~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGf 174 (343)
...|+=|+||||.|+++|+....+ .. + .+.+...+ |.-+.+.|.+|+.++.. ..+..--|
T Consensus 6 ~p~LvgDIGGTnaRfaLv~~a~~~--~~--~------~~~~~~~d----ypsle~av~~yl~~~~~------~~~~~a~~ 65 (320)
T COG0837 6 YPRLVGDIGGTNARFALVEIAPAE--PL--Q------AETYACAD----YPSLEEAVQDYLSEHTA------VAPRSACF 65 (320)
T ss_pred CceEEEecCCcceEEEEeccCCCC--cc--c------cceecccC----cCCHHHHHHHHHHHhhc------cCccceEE
Confidence 345667999999999999875431 11 0 02222222 23345556667666521 13345667
Q ss_pred eeeeeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhcccccC------------
Q 019310 175 TFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN------------ 242 (343)
Q Consensus 175 tFSfPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~~------------ 242 (343)
..-.|++-.-+.--|+ +|.= +. +.|++ .+.++=+.++||=.|..++-....
T Consensus 66 AiAgPv~gd~v~lTN~-~W~~----------s~-~~~r~-----~Lgl~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~ 128 (320)
T COG0837 66 AIAGPIDGDEVRLTNH-DWVF----------SI-ARMRA-----ELGLDHLSLINDFAAQALAIPRLGAEDLEQIGGGKP 128 (320)
T ss_pred EEecCccCCEEeeecC-cccc----------cH-HHHHH-----hcCCCcEEEechHHHHHhhccccCHHHHHHhcCCCC
Confidence 7788886432222222 4431 11 22223 334445889999999988877732
Q ss_pred -CCcEEE-EEEccccceeEEcccCcCCCCCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhHhcc-CCCCCcccceeecc
Q 019310 243 -KDAIAA-VILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTE-SLNPGEQVAILMCQ 319 (343)
Q Consensus 243 -~~~~ig-lIlGTGtNa~y~e~~~~I~k~~~~~~e~~~miINtEwG~f~~~~lp~T~~D~~lD~~-s~nPG~q~fEKmiS 319 (343)
+..-++ +==|||-+.|++.+.. .+-+.+-+|=|.- +.-|+|+-|.+|=+. ..+-|.-.-|..+|
T Consensus 129 ~~~a~~avlGPGTGLGVa~Lv~~~-----------~~w~~lp~EGGHv--df~P~~~~E~~i~~~l~~~~GrVS~Er~LS 195 (320)
T COG0837 129 EPNAPRAVLGPGTGLGVAGLVPNG-----------GGWIPLPGEGGHV--DFAPRSEREFQILEYLRARFGRVSAERVLS 195 (320)
T ss_pred CCCCceEEEcCCCCcceEEEEecC-----------CeeEeccCCCccc--cCCCCCHHHHHHHHHHHHhcCccchhhhcc
Confidence 122222 2246777778887642 2356777777754 457899998877543 33567777899999
Q ss_pred cc-----hhHHhh
Q 019310 320 FH-----VTIAYI 327 (343)
Q Consensus 320 G~-----~~~~~~ 327 (343)
|+ ||-+|-
T Consensus 196 G~GL~~iY~al~~ 208 (320)
T COG0837 196 GPGLVNLYRALCA 208 (320)
T ss_pred cccHHHHHHHHHH
Confidence 98 776654
No 32
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.64 E-value=0.0074 Score=62.99 Aligned_cols=73 Identities=16% Similarity=0.281 Sum_probs=51.4
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeec--CC-CcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeee
Q 019310 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PP-HLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~I--p~-~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lG 173 (343)
+|+||+|+|+.|+++++.+|+ ++...+.+++. |. .....+.+++++-+.+++++.+++.+... +++..||
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~---i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~----~~I~~Ig 74 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGD---ILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDP----NSVKGIG 74 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCC---EEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCh----hheEEEE
Confidence 799999999999999998775 55443333432 22 12234688999999999999998765432 3456666
Q ss_pred eee
Q 019310 174 FTF 176 (343)
Q Consensus 174 ftF 176 (343)
++.
T Consensus 75 is~ 77 (541)
T TIGR01315 75 FDA 77 (541)
T ss_pred ecc
Confidence 665
No 33
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=96.59 E-value=0.0072 Score=62.18 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=49.3
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeec--CCC-cccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeee
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPH-LMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~I--p~~-~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~l 172 (343)
.+|+||+|+|++|+++++.+|+ ++...+..++. |.. ....+.+++++.+.+++++.+++.+... +++..|
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~----~~i~aI 74 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKDGN---IVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIKP----DDIAAI 74 (493)
T ss_pred eEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCh----hheeEE
Confidence 4799999999999999998775 55443333332 221 1123578899999999999998865432 245555
Q ss_pred eee
Q 019310 173 GFT 175 (343)
Q Consensus 173 Gft 175 (343)
|++
T Consensus 75 gis 77 (493)
T TIGR01311 75 GIT 77 (493)
T ss_pred EEe
Confidence 553
No 34
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=96.57 E-value=0.0091 Score=61.63 Aligned_cols=61 Identities=13% Similarity=0.299 Sum_probs=44.1
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEee--cCCC-cccCCchHHHHHHHHHHHHHHHhcC
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--IPPH-LMTGSSHELFDYIAAALAKFVATEG 159 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~--Ip~~-~~~~~~~~lFd~IA~~I~~fl~~~~ 159 (343)
.+|+||+|+|++|+++++.+|+ ++...+.+++ .|.. ....+.+++++.+.+++++.+++.+
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~ 64 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGK---IVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLE 64 (505)
T ss_pred CEEEEeccccceEEEEEcCCCC---EEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCC
Confidence 3799999999999999998765 5544434343 2211 2234678899999999999988654
No 35
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=96.49 E-value=0.011 Score=61.21 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=53.8
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecC-----CCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCee
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIP-----PHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip-----~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l 170 (343)
.+|+||+|.|+.|+++++.+|+ ++...+.+++.+ ......+.+++++.+.++|++.+++.+... +++.
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~---~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~~----~~I~ 76 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGN---QIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIPA----SDIA 76 (520)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCCc----cceE
Confidence 5899999999999999998775 454443444322 111223688999999999999997754321 2445
Q ss_pred eeeeeee----eeeeec
Q 019310 171 ELGFTFS----FPVRQT 183 (343)
Q Consensus 171 ~lGftFS----fPv~q~ 183 (343)
.||++-- .++|+.
T Consensus 77 aI~~s~~~~~~v~~D~~ 93 (520)
T PRK10939 77 AVSATSMREGIVLYDRN 93 (520)
T ss_pred EEEEECCcccEEEECCC
Confidence 5554422 556653
No 36
>PRK13321 pantothenate kinase; Reviewed
Probab=96.48 E-value=0.0033 Score=59.44 Aligned_cols=195 Identities=17% Similarity=0.171 Sum_probs=91.9
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeee
Q 019310 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGftF 176 (343)
+|+||+|||++|+++++ +++ +. ..+++|+... .+.+++++.+.+.+. +.+... .+...++++.
T Consensus 2 iL~IDIGnT~ik~gl~~-~~~---i~----~~~~~~T~~~-~~~~~~~~~l~~l~~----~~~~~~----~~i~~i~vss 64 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GDR---LL----RSFRLPTDKS-RTSDELGILLLSLFR----HAGLDP----EDIRAVVISS 64 (256)
T ss_pred EEEEEECCCeEEEEEEE-CCE---EE----EEEEEecCCC-CCHHHHHHHHHHHHH----HcCCCh----hhCCeEEEEe
Confidence 68999999999999997 332 33 2466776644 345666666655444 333221 1234455443
Q ss_pred eeeeeeccCCceEEeeeccc-cccCC-CCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhcccccCCC-cEEEEEEcc
Q 019310 177 SFPVRQTSIASGDLIKWTKG-FSIED-TVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKD-AIAAVILGT 253 (343)
Q Consensus 177 SfPv~q~~i~~g~Li~WtKg-F~~~~-~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~~~~-~~iglIlGT 253 (343)
.+.+. ...+..+.+. |.++. .++.+...-++.++ .. +..+=||=.+.+++.....+. ..+-+-+||
T Consensus 65 --Vvp~~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~y---~~---P~~lG~DR~a~~~aa~~~~~~~~~lvid~GT 133 (256)
T PRK13321 65 --VVPPL---NYSLESACKRYFGIKPLFVGPGIKTGLKIRY---DN---PREVGADRIVNAVAARRLYPDRNLIVVDFGT 133 (256)
T ss_pred --ecccH---HHHHHHHHHHHhCCCeEEECCCCCCCccccc---CC---hhhccHHHHHHHHHHHHHcCCCCEEEEECCC
Confidence 22210 1111111111 11111 11111111111111 11 256888955555554333333 677788888
Q ss_pred ccceeEEcccCcC------CCCCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhHhccCCCCCcccceeecccch--hHH
Q 019310 254 GTNAAYVERAHAI------PKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQVAILMCQFHV--TIA 325 (343)
Q Consensus 254 GtNa~y~e~~~~I------~k~~~~~~e~~~miINtEwG~f~~~~lp~T~~D~~lD~~s~nPG~q~fEKmiSG~~--~~~ 325 (343)
=+..-++.+...+ |++. |-.++=.. +...+|.-+.. .....+|...-|-|-||.+ ...
T Consensus 134 A~T~d~v~~~g~~~GG~I~PG~~--------l~~~aL~~--~ta~Lp~~~~~----~~~~~~g~~T~~ai~~G~~~~~~~ 199 (256)
T PRK13321 134 ATTFDCVSGKGEYLGGAICPGIL--------ISMEALSQ--KTAKLPRVEIA----KPPSAIGKSTVSSIQSGLYYGYAG 199 (256)
T ss_pred ceEEEEEcCCCcEEEEEECccHH--------HHHHHHHh--hhhcCCCCccC----CCCCcCCCCHHHHHHHHHHHHHHH
Confidence 8888777543211 1111 00000000 01124443221 2233478888888888884 345
Q ss_pred hhhhhccc
Q 019310 326 YIDSFIDS 333 (343)
Q Consensus 326 ~~~~~~~~ 333 (343)
.++.+++.
T Consensus 200 ~i~~~i~~ 207 (256)
T PRK13321 200 LVEGIVAR 207 (256)
T ss_pred HHHHHHHH
Confidence 55555543
No 37
>PRK00047 glpK glycerol kinase; Provisional
Probab=96.46 E-value=0.01 Score=61.22 Aligned_cols=62 Identities=23% Similarity=0.344 Sum_probs=45.2
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEee--cCCC-cccCCchHHHHHHHHHHHHHHHhcCC
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--IPPH-LMTGSSHELFDYIAAALAKFVATEGE 160 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~--Ip~~-~~~~~~~~lFd~IA~~I~~fl~~~~~ 160 (343)
.+|+||+|+|++|+++++.+|+ ++...+.+++ .|.. ....+.+++++-+.+++++.+++.+.
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~---~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~ 70 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGN---IVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGI 70 (498)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 5899999999999999998775 4444334443 2221 11236889999999999999987654
No 38
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=96.40 E-value=0.011 Score=61.59 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=47.2
Q ss_pred cEEEEeeCCceEEEEEEE-eCCCcceeEEEeeEEee-------cC-------CCcccCCchHHHHHHHHHHHHHHHhcCC
Q 019310 96 LFYALDLGGTNFRVLRVQ-LGGREGRVVKQEFEEVS-------IP-------PHLMTGSSHELFDYIAAALAKFVATEGE 160 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~-l~g~~~~i~~~~~~~~~-------Ip-------~~~~~~~~~~lFd~IA~~I~~fl~~~~~ 160 (343)
.+|+||+|.|+.|+++++ .+|+ ++...++.++ .| ......+.+++++-+.+++++.+++.+.
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~---~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~~ 78 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGE---EIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELGV 78 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCc---EeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcCC
Confidence 589999999999999999 8776 5544445554 23 2233456889999999999999987653
No 39
>PRK15027 xylulokinase; Provisional
Probab=96.26 E-value=0.017 Score=59.24 Aligned_cols=71 Identities=17% Similarity=0.348 Sum_probs=50.9
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeec--CC-CcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeee
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PP-HLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~I--p~-~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~l 172 (343)
.||+||+|.|++|+++++..|+ ++...+..+++ |. .....+.+++++.+.+++++.+++... +++..|
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~---vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~~~------~~I~aI 71 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGE---VVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSL------QDVKAL 71 (484)
T ss_pred CEEEEEecccceEEEEEcCCCC---EEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhCCc------cceeEE
Confidence 4899999999999999998775 66555555543 21 222346788999999999999976521 245666
Q ss_pred eee
Q 019310 173 GFT 175 (343)
Q Consensus 173 Gft 175 (343)
|++
T Consensus 72 ~is 74 (484)
T PRK15027 72 GIA 74 (484)
T ss_pred EEe
Confidence 664
No 40
>PRK10331 L-fuculokinase; Provisional
Probab=95.90 E-value=0.031 Score=57.21 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=43.3
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeec----CC-CcccCCchHHHHHHHHHHHHHHHhc
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI----PP-HLMTGSSHELFDYIAAALAKFVATE 158 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~I----p~-~~~~~~~~~lFd~IA~~I~~fl~~~ 158 (343)
.+|+||+|.|+.|+++++.+|+ ++...+..++. |. .....+.+++++.+.+++++.+++.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~---~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~ 67 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGK---IVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL 67 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCc---EEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC
Confidence 5899999999999999998775 55444333321 11 1223467889999999999998754
No 41
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.89 E-value=0.035 Score=57.36 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=44.5
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeec--C-CCcccCCchHHHHHHHHHHHHHHHhcC
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATEG 159 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~I--p-~~~~~~~~~~lFd~IA~~I~~fl~~~~ 159 (343)
.+|+||+|.|++|+++++.+|+ ++...+..+++ | ......+.+++++-+.+++.+.+++..
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~---~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~ 66 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGN---VVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLR 66 (504)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 5899999999999999998775 55444444432 1 112224678899999999999988754
No 42
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.79 E-value=0.033 Score=57.65 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=45.5
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCC---cccCCchHHHHHHHHHHHHHHHhcC
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPH---LMTGSSHELFDYIAAALAKFVATEG 159 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~---~~~~~~~~lFd~IA~~I~~fl~~~~ 159 (343)
.||+||+|.|+.|+.+++.++ ..++......+..... ....+.++++..+.++|++.+++..
T Consensus 5 ~~lgIDiGTt~~Kavl~d~~~--~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~ 69 (502)
T COG1070 5 YVLGIDIGTTSVKAVLFDEDG--GEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESK 69 (502)
T ss_pred EEEEEEcCCCcEEEEEEeCCC--CeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcc
Confidence 689999999999999999984 1244433333333321 2235789999999999999999864
No 43
>PRK04123 ribulokinase; Provisional
Probab=95.62 E-value=0.047 Score=56.96 Aligned_cols=62 Identities=19% Similarity=0.268 Sum_probs=44.1
Q ss_pred cEEEEeeCCceEEEEEEEe-CCCcceeEEEeeEEeec--------CCC-cccCCchHHHHHHHHHHHHHHHhcCC
Q 019310 96 LFYALDLGGTNFRVLRVQL-GGREGRVVKQEFEEVSI--------PPH-LMTGSSHELFDYIAAALAKFVATEGE 160 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l-~g~~~~i~~~~~~~~~I--------p~~-~~~~~~~~lFd~IA~~I~~fl~~~~~ 160 (343)
.+|+||+|.|+.|+++++. +|+ ++...+..++. |.. ....+.+++++-+.++|++.+++.+.
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~~ 75 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGE---ELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAGV 75 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCc---EeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 5899999999999999995 775 44444344431 211 12235778999999999999876554
No 44
>PLN02295 glycerol kinase
Probab=95.61 E-value=0.046 Score=56.66 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=45.4
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeec--CC-CcccCCchHHHHHHHHHHHHHHHhcCC
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PP-HLMTGSSHELFDYIAAALAKFVATEGE 160 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~I--p~-~~~~~~~~~lFd~IA~~I~~fl~~~~~ 160 (343)
.+|+||+|.|++|+++++.+|+ ++...+.++++ |+ .....+.+++++-+.++|++.+++.+.
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~---~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~ 65 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDAR---PVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAA 65 (512)
T ss_pred CEEEEecCCCceEEEEECCCCC---EEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 3799999999999999998775 44443334432 22 122346889999999999999987654
No 45
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=95.44 E-value=0.22 Score=48.43 Aligned_cols=126 Identities=21% Similarity=0.217 Sum_probs=79.2
Q ss_pred ccEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeee
Q 019310 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (343)
Q Consensus 95 G~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGf 174 (343)
-+||+||=|||..|+.+-+.+|+ ++-+ -..=|.++.+...++-+.-|.+.|.+.+.+.+.++ ..+++
T Consensus 5 ~~~lGVDGGGTkt~a~l~~~~g~---vlg~---g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~~-------~~i~~ 71 (301)
T COG2971 5 PYFLGVDGGGTKTRAVLADEDGN---VLGR---GKSGPANIQLVGKEEAVRNIKDAIREALDEAGLKP-------DEIAA 71 (301)
T ss_pred cEEEEEccCCcceEEEEEcCCCc---EEEE---eccCCceecccchHHHHHHHHHHHHHHHHhcCCCH-------HHhCc
Confidence 46999999999999999987665 4432 22346666666668999999999999998877643 11222
Q ss_pred eeeeeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCce-EEEEEechHHHHhcccccCCCcEEEEEEcc
Q 019310 175 TFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMR-VAALVNDTIGTLAGGRYHNKDAIAAVILGT 253 (343)
Q Consensus 175 tFSfPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~-vvaIvNDTvatlla~~y~~~~~~iglIlGT 253 (343)
++ +.- +..|.+..... ..+ .+.+|+- -+-|+||+..+|.++-..+.- +-+|+||
T Consensus 72 ~~--agl-------------------a~ag~~~~~~~-~~~-~~~l~~a~~v~v~~Dg~iAl~ga~~~~~G--ii~i~GT 126 (301)
T COG2971 72 IV--AGL-------------------ALAGANVEEAR-EEL-ERLLPFAGKVDVENDGLIALRGALGDDDG--IIVIAGT 126 (301)
T ss_pred ee--eee-------------------eccCcchhHHH-HHH-HHhcCccceEEEecChHHHHhhccCCCCC--EEEEecC
Confidence 22 111 01122221111 112 2345544 688999999999998654432 3467777
Q ss_pred ccceeEE
Q 019310 254 GTNAAYV 260 (343)
Q Consensus 254 GtNa~y~ 260 (343)
| ++|+
T Consensus 127 G--Si~~ 131 (301)
T COG2971 127 G--SIGY 131 (301)
T ss_pred C--eEEE
Confidence 7 4444
No 46
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.38 E-value=0.054 Score=55.38 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=42.9
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeec----C-CCcccCCchHHHHHHHHHHHHHHHh
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI----P-PHLMTGSSHELFDYIAAALAKFVAT 157 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~I----p-~~~~~~~~~~lFd~IA~~I~~fl~~ 157 (343)
.+|+||+|.|+.|+++++.+|+ ++...+.+++. | ......+.+++++.+.+++++.+.+
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~---~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~ 65 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGK---IVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE 65 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCC---EEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh
Confidence 3789999999999999998765 55444434331 1 1122346789999999999999864
No 47
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=93.64 E-value=0.56 Score=48.88 Aligned_cols=95 Identities=17% Similarity=0.223 Sum_probs=64.0
Q ss_pred cccEEEEeeCCceEEEEEEEe-CCCcceeEEEeeE--EeecCC-CcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCe
Q 019310 94 KGLFYALDLGGTNFRVLRVQL-GGREGRVVKQEFE--EVSIPP-HLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQ 169 (343)
Q Consensus 94 ~G~fLaIDlGGTNlRv~lV~l-~g~~~~i~~~~~~--~~~Ip~-~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~ 169 (343)
...+++||+|-|+.|+++++- .|+ ....+++ ...-|+ .....++++++.-+.+||+...++-... ..
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e---~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~------~~ 75 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGE---LLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVL------NI 75 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCc---cceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccc------cc
Confidence 456999999999999999984 343 2211111 112222 2334679999999999999988765543 34
Q ss_pred eeeeeeeeeeeeeccCCceEEeeeccccccCC
Q 019310 170 RELGFTFSFPVRQTSIASGDLIKWTKGFSIED 201 (343)
Q Consensus 170 l~lGftFSfPv~q~~i~~g~Li~WtKgF~~~~ 201 (343)
...|.+.+.-+.| +...+-|.|....+.
T Consensus 76 ~~~~~~~igv~~q----r~~~v~w~~~tg~p~ 103 (516)
T KOG2517|consen 76 KVVGATCIGVVNQ----REGSVLWNKRTGEPL 103 (516)
T ss_pred cccccEEEEEEec----CCceEEeecCCCCcc
Confidence 5567899999988 345557887655544
No 48
>PRK03011 butyrate kinase; Provisional
Probab=93.47 E-value=0.49 Score=47.23 Aligned_cols=162 Identities=11% Similarity=0.155 Sum_probs=86.8
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCC-Cccc-CCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeee
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPP-HLMT-GSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~-~~~~-~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lG 173 (343)
+.|+|+-|.|+-|+++.+ +. ..+.. +....+. ++.. .+..+=++|=.+.|.+++++++... .+...+|
T Consensus 3 ~il~inpgststk~a~~~--~~-~~~~~---~~~~h~~~~~~~~~~~~~q~~~r~~~i~~~l~~~g~~~----~~l~av~ 72 (358)
T PRK03011 3 RILVINPGSTSTKIAVFE--DE-KPIFE---ETLRHSAEELEKFKTIIDQYEFRKQAILDFLKEHGIDL----SELDAVV 72 (358)
T ss_pred EEEEEcCCCchheEEEEc--CC-ceeee---eccccCHHHHhcCCCccchHHHHHHHHHHHHHHcCCCh----hcceEEE
Confidence 479999999999999995 22 22332 1222232 2221 2334567777888889998876532 1222221
Q ss_pred eeeeeeee--ecc---CCceEEeeeccccccCCCCCCcHHHHHHHHHHH-cCCCceEEEEEec-----------------
Q 019310 174 FTFSFPVR--QTS---IASGDLIKWTKGFSIEDTVGEDVVGELTKAMER-IGLDMRVAALVND----------------- 230 (343)
Q Consensus 174 ftFSfPv~--q~~---i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r-~~l~v~vvaIvND----------------- 230 (343)
. =.+.++ +.+ ++..-+-.-.+.-. ..-=.++..++-..+.+ .++| ++|.|+
T Consensus 73 ~-RgG~~~~v~gG~~~v~~~~~~~l~~~~~--~~~~~nl~~~~a~~~~~~~~~p---~~v~D~~~~~~~~~~a~~~~lp~ 146 (358)
T PRK03011 73 G-RGGLLKPIPGGTYRVNEAMLEDLKNGKY--GEHASNLGAIIAYEIAKELGIP---AFIVDPVVVDEMEPVARISGLPE 146 (358)
T ss_pred E-cCCCCcccCCCCEEcCHHHHHHHHhcCC--CCCCCCHHHHHHHHHHHhcCCC---EEEECCcccccCCHHHHHcCCCC
Confidence 1 111111 111 11111100001000 00012344444444433 4667 688888
Q ss_pred ---------hHHHHhcccc-----c--CCCcEEEEEEccccceeEEcccCcCCCCCCCC
Q 019310 231 ---------TIGTLAGGRY-----H--NKDAIAAVILGTGTNAAYVERAHAIPKWHGLL 273 (343)
Q Consensus 231 ---------Tvatlla~~y-----~--~~~~~iglIlGTGtNa~y~e~~~~I~k~~~~~ 273 (343)
..--.++++| + .....|.+.+|||+.+|.+.+++.+.+..+..
T Consensus 147 i~R~~gfHgln~~~va~~~a~~~g~~~~~~n~I~~hLGtGig~gai~~Gk~idgs~g~a 205 (358)
T PRK03011 147 IERKSIFHALNQKAVARRVAKELGKKYEELNLIVAHLGGGISVGAHRKGRVIDVNNALD 205 (358)
T ss_pred cceeecchHHhHHHHHHHHHHHhCCCcccCcEEEEEeCCCceeeEEECCEEEecCCccC
Confidence 4444555554 2 23488999999999999999999887665543
No 49
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=92.01 E-value=0.46 Score=44.48 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=32.6
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCC
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~ 160 (343)
.+|+||+|.|+.|+++++ +|+ ++... +. +. +..++-.++.+.+.+++.+.
T Consensus 1 ~~lGIDiGtts~K~vl~d-~g~---il~~~---~~-~~-------~~~~~~~~~~l~~~~~~~~~ 50 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-DGK---VIGYK---WL-DT-------TPVIEETARAILEALKEAGI 50 (248)
T ss_pred CEEEEEcChhheEEEEEc-CCE---EEEEE---Ee-cC-------CCCHHHHHHHHHHHHHHcCC
Confidence 378999999999999997 543 44221 22 22 23455667777777765543
No 50
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=91.45 E-value=0.41 Score=48.77 Aligned_cols=59 Identities=19% Similarity=0.065 Sum_probs=37.8
Q ss_pred EEEeeCCceEEEEEEEeCCCcceeE-EEeeEEeecCCCc---ccCCchHHHHHHHHHHHHHHH
Q 019310 98 YALDLGGTNFRVLRVQLGGREGRVV-KQEFEEVSIPPHL---MTGSSHELFDYIAAALAKFVA 156 (343)
Q Consensus 98 LaIDlGGTNlRv~lV~l~g~~~~i~-~~~~~~~~Ip~~~---~~~~~~~lFd~IA~~I~~fl~ 156 (343)
||||+|.|+.|+++++.++.+..+. ....+..+...+. ..-+.+++++.+.+++++...
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 6899999999999999985533343 2221221111111 112466889999999998865
No 51
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=91.16 E-value=0.49 Score=48.71 Aligned_cols=88 Identities=20% Similarity=0.304 Sum_probs=64.7
Q ss_pred cccEEEEeeCCceEEEEEEEeCCCcceeEEEe-eEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeee
Q 019310 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQE-FEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (343)
Q Consensus 94 ~G~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~-~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~l 172 (343)
..+++|||-|-|+.|+.+++-+|+--.+.+.+ .+-|+-|.-+. .++.+++.-...++.+.+.+.+... .++..|
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~GWVE-hDp~eIw~~~~~~l~~a~~~~~i~~----~~iaaI 78 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVE-HDPLEIWASVRSVLKEALAKAGIKP----GEIAAI 78 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCCccc-cCHHHHHHHHHHHHHHHHHHcCCCc----cceEEE
Confidence 46789999999999999998877621111111 12355555444 6899999999999999999887654 578889
Q ss_pred eeeeeeeeeeccCCceEEeeecc
Q 019310 173 GFTFSFPVRQTSIASGDLIKWTK 195 (343)
Q Consensus 173 GftFSfPv~q~~i~~g~Li~WtK 195 (343)
|+| +| +.+.+-|.|
T Consensus 79 GIT-----NQ----RETtvvWdk 92 (499)
T COG0554 79 GIT-----NQ----RETTVVWDK 92 (499)
T ss_pred Eee-----cc----ceeEEEEeC
Confidence 987 45 667778887
No 52
>PLN02669 xylulokinase
Probab=90.92 E-value=0.82 Score=48.13 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=40.5
Q ss_pred cCCCCcccccEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeec--CCCcc----cCCch----------HHHHHHHHH
Q 019310 87 NLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPHLM----TGSSH----------ELFDYIAAA 150 (343)
Q Consensus 87 ~lP~G~E~G~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~I--p~~~~----~~~~~----------~lFd~IA~~ 150 (343)
+||. ...||+||+|.|++|+++++.+|+ ++...+..|.+ |..-. ..+.+ ..++-+..+
T Consensus 3 ~~~~---~~~~LGiD~GT~s~Ka~l~d~~g~---vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~ 76 (556)
T PLN02669 3 SLPE---DSLFLGFDSSTQSLKATVLDSNLR---IVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLL 76 (556)
T ss_pred CCCC---CCeEEEEecccCCeEEEEEcCCCC---EEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHH
Confidence 3555 346999999999999999998776 55444444431 22110 11223 455888888
Q ss_pred HHHHH
Q 019310 151 LAKFV 155 (343)
Q Consensus 151 I~~fl 155 (343)
+++.+
T Consensus 77 l~~l~ 81 (556)
T PLN02669 77 LQKLA 81 (556)
T ss_pred HHHHH
Confidence 88876
No 53
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=90.02 E-value=14 Score=36.47 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=33.9
Q ss_pred CcHHHHHHHHHHHcCCCceEEEEEechHHHHhcccccC--CCcEEEEEEccccce
Q 019310 205 EDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGTNA 257 (343)
Q Consensus 205 ~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~~--~~~~iglIlGTGtNa 257 (343)
++..+.+.++++..|++ +..++++..|+..+..... +...+-+=+|.|+--
T Consensus 157 ~~~v~~~~~~~~~aGl~--~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~ 209 (371)
T TIGR01174 157 STILRNLVKCVERCGLE--VDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTD 209 (371)
T ss_pred HHHHHHHHHHHHHcCCC--eeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEE
Confidence 45677777888766665 5788999999988653322 234555557766643
No 54
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=88.52 E-value=1.2 Score=46.49 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=48.0
Q ss_pred cEEEEeeCCceEEEEEEEeC-CCcceeEEEee---EEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCC
Q 019310 96 LFYALDLGGTNFRVLRVQLG-GREGRVVKQEF---EEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGF 162 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~-g~~~~i~~~~~---~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~ 162 (343)
++|+||+|--+-|+++++.. |.. +.... ..+.++......++++.+.-++.+|.+.+++.+...
T Consensus 4 ~~iGvDvGTgSaRA~v~D~~~G~~---la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~ 71 (544)
T COG1069 4 YVIGVDVGTGSARAGVFDCQTGTL---LARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDP 71 (544)
T ss_pred EEEEEeecCCceeEEEEEcCCCcc---hhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCCh
Confidence 68999999999999999996 542 22111 233444444456789999999999999999988753
No 55
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=87.89 E-value=4.4 Score=39.40 Aligned_cols=63 Identities=19% Similarity=0.385 Sum_probs=40.5
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCC
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~ 160 (343)
.++|||+|.+++|++.++-.+++-.+. .....++|.+....+.-.=.+-+++.|++.+++.+.
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~~~~v~--~~~~~~~p~~~i~~g~i~d~~~~~~~l~~~~~~~~~ 66 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGDRYKLE--HYAVEPLPAGIFTEGHIVEYQAVAEALKELLSELGI 66 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCCceEEE--EEEEEECCCCcccCCCccCHHHHHHHHHHHHHHcCC
Confidence 589999999999999888655432233 334567776654222111135567788888877654
No 56
>PRK13410 molecular chaperone DnaK; Provisional
Probab=85.20 E-value=2.6 Score=45.51 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=17.3
Q ss_pred ccEEEEeeCCceEEEEEEE
Q 019310 95 GLFYALDLGGTNFRVLRVQ 113 (343)
Q Consensus 95 G~fLaIDlGGTNlRv~lV~ 113 (343)
|..+|||||.||-.|++++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVME 20 (668)
T ss_pred CcEEEEEeCCCcEEEEEEE
Confidence 5689999999999999986
No 57
>PRK13324 pantothenate kinase; Reviewed
Probab=84.59 E-value=7.1 Score=37.24 Aligned_cols=46 Identities=17% Similarity=0.410 Sum_probs=31.3
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCC-CcccCCchHHHHHHHHHH
Q 019310 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPP-HLMTGSSHELFDYIAAAL 151 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~-~~~~~~~~~lFd~IA~~I 151 (343)
.|+||+|-||++.++.+ ++ ... ..++++. +.. .+.++++-++...+
T Consensus 2 iL~iDiGNT~ik~gl~~--~~--~~~----~~~r~~t~~~~-~t~de~~~~l~~~~ 48 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD--GD--RIV----SQIRYATSSVD-STSDQMGVFLRQAL 48 (258)
T ss_pred EEEEEeCCCceEEEEEE--CC--EEE----EEEEEecCccc-cchHHHHHHHHHHH
Confidence 68999999999999997 22 233 3567776 443 56666666665533
No 58
>CHL00094 dnaK heat shock protein 70
Probab=83.53 E-value=3.4 Score=44.02 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=17.0
Q ss_pred ccEEEEeeCCceEEEEEEE
Q 019310 95 GLFYALDLGGTNFRVLRVQ 113 (343)
Q Consensus 95 G~fLaIDlGGTNlRv~lV~ 113 (343)
+.++|||||.||..+++++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVME 20 (621)
T ss_pred CceEEEEeCcccEEEEEEE
Confidence 3589999999999999985
No 59
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=82.91 E-value=16 Score=34.41 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=32.6
Q ss_pred EEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHH
Q 019310 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAAL 151 (343)
Q Consensus 98 LaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I 151 (343)
|+||+|-||+++++.+ ++ ++. ..|++|++.. .+.+++..++...+
T Consensus 2 L~iDiGNT~i~~g~~~--~~--~~~----~~~r~~t~~~-~t~de~~~~l~~~~ 46 (243)
T TIGR00671 2 LLIDVGNTRIVFALNS--GN--KVY----QFWRLATNLM-KTYDEHSEFLKELF 46 (243)
T ss_pred EEEEECCCcEEEEEEE--CC--EEE----EEEEecCCCc-cChHHHHHHHHHHH
Confidence 7899999999999996 22 233 3578888776 57778776655443
No 60
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=82.15 E-value=16 Score=34.75 Aligned_cols=115 Identities=18% Similarity=0.225 Sum_probs=62.0
Q ss_pred CCCcccccEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 019310 89 PTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGR 168 (343)
Q Consensus 89 P~G~E~G~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~ 168 (343)
|.-+.++.+++||+|-|++|+.+.+..++ ++.. -......++.|.-.+ ++-....|..+++....... .+
T Consensus 18 ~~~~~~~~~~~iDiGSssi~~vv~~~~~~---~~~~---~~~~~~~vr~G~i~d-i~~a~~~i~~~~~~ae~~~g---~~ 87 (267)
T PRK15080 18 PVATESPLKVGVDLGTANIVLAVLDEDGQ---PVAG---ALEWADVVRDGIVVD-FIGAVTIVRRLKATLEEKLG---RE 87 (267)
T ss_pred CCCCCCCEEEEEEccCceEEEEEEcCCCC---EEEE---EeccccccCCCEEee-HHHHHHHHHHHHHHHHHHhC---CC
Confidence 34456788999999999999988765443 2211 111222333332112 56666677777653211000 01
Q ss_pred eeeeeeeeeeeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhcc
Q 019310 169 QRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGG 238 (343)
Q Consensus 169 ~l~lGftFSfPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~ 238 (343)
...+. .+.|..++. .+ ...+.+++++.|++ +..++++..|+..+.
T Consensus 88 i~~v~--~~vp~~~~~--------------------~~-~~~~~~~~~~aGl~--~~~ii~e~~A~a~~~ 132 (267)
T PRK15080 88 LTHAA--TAIPPGTSE--------------------GD-PRAIINVVESAGLE--VTHVLDEPTAAAAVL 132 (267)
T ss_pred cCeEE--EEeCCCCCc--------------------hh-HHHHHHHHHHcCCc--eEEEechHHHHHHHh
Confidence 11222 245544321 11 22355777777776 467899999887753
No 61
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=80.79 E-value=5.1 Score=43.19 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=16.9
Q ss_pred ccEEEEeeCCceEEEEEEE
Q 019310 95 GLFYALDLGGTNFRVLRVQ 113 (343)
Q Consensus 95 G~fLaIDlGGTNlRv~lV~ 113 (343)
|..+|||||.||..|++++
T Consensus 41 ~~viGIDlGTt~s~va~~~ 59 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIME 59 (663)
T ss_pred CcEEEEEECcccEEEEEEe
Confidence 4589999999999999885
No 62
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=80.74 E-value=6.2 Score=42.57 Aligned_cols=33 Identities=21% Similarity=0.119 Sum_probs=23.1
Q ss_pred ceeeecccccCCCCcccccEEEEeeCCceEEEEEEEe
Q 019310 78 LKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQL 114 (343)
Q Consensus 78 l~MlPs~v~~lP~G~E~G~fLaIDlGGTNlRv~lV~l 114 (343)
...+-+|+.. .-.+.++|||||.||..|+.++-
T Consensus 14 ~~~~~~~~~~----~~~~~viGIDLGTTnS~vA~~~~ 46 (657)
T PTZ00186 14 AARLARHESQ----KVQGDVIGVDLGTTYSCVATMDG 46 (657)
T ss_pred cccccccccC----cccceEEEEEeCcCeEEEEEEeC
Confidence 3445555532 22457999999999999998853
No 63
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=80.52 E-value=8.8 Score=41.27 Aligned_cols=20 Identities=30% Similarity=0.132 Sum_probs=17.2
Q ss_pred ccEEEEeeCCceEEEEEEEe
Q 019310 95 GLFYALDLGGTNFRVLRVQL 114 (343)
Q Consensus 95 G~fLaIDlGGTNlRv~lV~l 114 (343)
+.++|||||.||..|++++-
T Consensus 4 ~~~iGIDlGTt~s~va~~~~ 23 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKN 23 (653)
T ss_pred ccEEEEEeCcccEEEEEEeC
Confidence 45899999999999998853
No 64
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=80.19 E-value=4.1 Score=41.39 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.0
Q ss_pred CCcccccEEEEeeCCceEEEEEEE
Q 019310 90 TGDEKGLFYALDLGGTNFRVLRVQ 113 (343)
Q Consensus 90 ~G~E~G~fLaIDlGGTNlRv~lV~ 113 (343)
.+..+|.|++||+|+|+.|+.+++
T Consensus 139 ~~~~~g~~lGIDiGSTttK~Vl~d 162 (404)
T TIGR03286 139 RERQEGLTLGIDSGSTTTKAVVME 162 (404)
T ss_pred hhccCCEEEEEEcChhheeeEEEc
Confidence 356678999999999999999986
No 65
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=79.83 E-value=4.1 Score=38.85 Aligned_cols=173 Identities=17% Similarity=0.216 Sum_probs=93.1
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeee-eee
Q 019310 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL-GFT 175 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~l-Gft 175 (343)
-+|||+|||=.||..-....+ + ..|.+-+. ..-+++.+|++..|.+-.+...... ..... |=.
T Consensus 20 ~vaiDiGGtLaKvv~sp~~sn--r------l~F~t~eT---~kId~~ve~l~~li~~h~k~C~~~~-----~liatGGga 83 (342)
T COG5146 20 KVAIDIGGTLAKVVQSPSQSN--R------LTFKTEET---KKIDQVVEWLNNLIQQHEKLCLTKI-----TLIATGGGA 83 (342)
T ss_pred EEEEecCceeeeeeeCccccc--c------eeeehHhh---hhHHHHHHHHHHHHHHHHhhhhhee-----eEEecCCcc
Confidence 589999999988865222111 1 12333322 3457889999887776544322111 00000 001
Q ss_pred eeeeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHc--CCCceEEEEEechHHHHhc----ccccCCCcEEEE
Q 019310 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERI--GLDMRVAALVNDTIGTLAG----GRYHNKDAIAAV 249 (343)
Q Consensus 176 FSfPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~--~l~v~vvaIvNDTvatlla----~~y~~~~~~igl 249 (343)
|-|- -++.|.|+++ +...+-.+.|...|+-. ++|- -|.+.||..+-.+. +.+.+-...+-+
T Consensus 84 ~kfy-----------d~m~~~~~ik-v~r~~eme~li~gl~~fv~~IP~-evFv~~d~~~e~~~~~~~~~~h~lypyilv 150 (342)
T COG5146 84 YKFY-----------DRMSKQLDIK-VIRENEMEILINGLNYFVINIPA-EVFVEFDAASEGLGILLKEQGHDLYPYILV 150 (342)
T ss_pred hhhH-----------HHHhhhccce-eeecchHHHHHhcccceeeeccH-HHeeeeccccchhhhhhhhccccccceeeE
Confidence 1110 1456666665 44444444444433111 1222 26788998765544 444445678889
Q ss_pred EEccccceeEEcccCcCCCCCCCCCCCCcEEEEecCCCcCCCCCCCChhhHhHhc
Q 019310 250 ILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDT 304 (343)
Q Consensus 250 IlGTGtNa~y~e~~~~I~k~~~~~~e~~~miINtEwG~f~~~~lp~T~~D~~lD~ 304 (343)
=+|+|+..-|+-.-+......+..- .| -|=||..- =--+.|.||..+|.
T Consensus 151 NiGsGvSilkvtgpsqf~RvGGssl-GG----GtlwGLls-Llt~a~~ydqmld~ 199 (342)
T COG5146 151 NIGSGVSILKVTGPSQFERVGGSSL-GG----GTLWGLLS-LLTQATDYDQMLDM 199 (342)
T ss_pred eccCCeEEEEecCcchhcccccccc-Cc----chHHHHHH-HHcccccHHHHHHH
Confidence 9999999988866555444333211 11 23477541 11367999999985
No 66
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=79.60 E-value=13 Score=37.00 Aligned_cols=168 Identities=17% Similarity=0.240 Sum_probs=96.9
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCC-----C-----
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHV-----S----- 165 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~-----~----- 165 (343)
.-++||+|-+.++++-+.-.|+.. .-.+...-++|..++....--=.+-+++.|++.+.+++...+. +
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~--kLe~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~~k~aa~AVP~s~ai 88 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRY--KLEKYASEPLPENIVADGKIVDYDAVASALKRALAKLGIKSKNAATAVPGSAAI 88 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCce--eeeeeeecccCccccccCCcccHHHHHHHHHHHHHhcCcchhhhhhhcCcccee
Confidence 478999999999998776445432 2223346789998876554455678899999999888765431 0
Q ss_pred ------CC---C-------eeeeeeeeeeeeeeccCCceEEeeeccccccCC----CCCCcHHHHHHHHHHHcCCCceEE
Q 019310 166 ------PG---R-------QRELGFTFSFPVRQTSIASGDLIKWTKGFSIED----TVGEDVVGELTKAMERIGLDMRVA 225 (343)
Q Consensus 166 ------~~---~-------~l~lGftFSfPv~q~~i~~g~Li~WtKgF~~~~----~~G~dv~~lL~~al~r~~l~v~vv 225 (343)
+. + ....+-.+|||+++-+++=-.|-....+=.-.. +--+++++...++++.-|+..+|+
T Consensus 89 tk~i~vp~~lde~eL~~~V~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~~vl 168 (354)
T COG4972 89 TKTIPVPDELDEKELEDQVESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEPKVL 168 (354)
T ss_pred eEEeccCCcccHHHHHHHHHHHHhhcCCCchhhcccceEEeccccCCCccEEEEEEEeehhhhHHHHHHHHHcCCCceEE
Confidence 00 0 124566799999987765444321111100000 012689999999999889875443
Q ss_pred EE-----EechHHHHhcccccCCCcE-EEE--EEccccceeEEcccCcC
Q 019310 226 AL-----VNDTIGTLAGGRYHNKDAI-AAV--ILGTGTNAAYVERAHAI 266 (343)
Q Consensus 226 aI-----vNDTvatlla~~y~~~~~~-igl--IlGTGtNa~y~e~~~~I 266 (343)
-| .| +..-++...+..+... +.+ |=+|-+-.|.+-+.+.+
T Consensus 169 DV~~fAl~r-a~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~l 216 (354)
T COG4972 169 DVESFALLR-AYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKIL 216 (354)
T ss_pred ehHHHHHHH-HHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeee
Confidence 33 22 2222222323333322 223 34455666776665443
No 67
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=78.24 E-value=4.9 Score=42.89 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=17.8
Q ss_pred ccccEEEEeeCCceEEEEEEE
Q 019310 93 EKGLFYALDLGGTNFRVLRVQ 113 (343)
Q Consensus 93 E~G~fLaIDlGGTNlRv~lV~ 113 (343)
.+...+|||||.||-.|+.++
T Consensus 17 ~~~~~iGIDlGTt~s~va~~~ 37 (616)
T PRK05183 17 QRRLAVGIDLGTTNSLVATVR 37 (616)
T ss_pred cCCeEEEEEeccccEEEEEEE
Confidence 344689999999999999984
No 68
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=77.60 E-value=4.4 Score=43.20 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=17.0
Q ss_pred ccEEEEeeCCceEEEEEEE
Q 019310 95 GLFYALDLGGTNFRVLRVQ 113 (343)
Q Consensus 95 G~fLaIDlGGTNlRv~lV~ 113 (343)
+..+|||||.||.++++++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVME 20 (627)
T ss_pred CcEEEEEeCcccEEEEEEE
Confidence 3579999999999999986
No 69
>PRK13411 molecular chaperone DnaK; Provisional
Probab=76.41 E-value=10 Score=40.80 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=16.9
Q ss_pred ccEEEEeeCCceEEEEEEE
Q 019310 95 GLFYALDLGGTNFRVLRVQ 113 (343)
Q Consensus 95 G~fLaIDlGGTNlRv~lV~ 113 (343)
+..+|||||.||-.|++++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLE 20 (653)
T ss_pred CcEEEEEeCcccEEEEEEE
Confidence 4589999999999999885
No 70
>PLN03184 chloroplast Hsp70; Provisional
Probab=74.95 E-value=9.4 Score=41.26 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=16.4
Q ss_pred cEEEEeeCCceEEEEEEE
Q 019310 96 LFYALDLGGTNFRVLRVQ 113 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~ 113 (343)
..++||||.||..+++++
T Consensus 40 ~viGIDlGTt~s~va~~~ 57 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAME 57 (673)
T ss_pred CEEEEEeCcCcEEEEEEE
Confidence 479999999999999985
No 71
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=74.92 E-value=28 Score=30.93 Aligned_cols=57 Identities=18% Similarity=0.319 Sum_probs=33.6
Q ss_pred EEEEeeCCceEEEEEEEeCCCcc-eeEEEeeEEeecCCC-cccCCchHHHHHHHHHHHHHHHhc
Q 019310 97 FYALDLGGTNFRVLRVQLGGREG-RVVKQEFEEVSIPPH-LMTGSSHELFDYIAAALAKFVATE 158 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l~g~~~-~i~~~~~~~~~Ip~~-~~~~~~~~lFd~IA~~I~~fl~~~ 158 (343)
|.+||+|-+++++...+..+++. .+.-. -..|.. +..|.-.+ .+-++++|++.+++.
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~----~~~~s~gi~~G~I~d-~~~~~~~I~~ai~~a 59 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGV----GEVPSRGIRKGVIVD-IEAAARAIREAVEEA 59 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEE----EEecCCCccCcEEEC-HHHHHHHHHHHHHHH
Confidence 57999999999999998865432 23321 123543 44443222 445566666666544
No 72
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=73.90 E-value=50 Score=34.46 Aligned_cols=49 Identities=24% Similarity=0.298 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHcCCCceEEEEEechHHHHhcccccCC---CcEEEEEEccccc
Q 019310 206 DVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNK---DAIAAVILGTGTN 256 (343)
Q Consensus 206 dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~~~---~~~iglIlGTGtN 256 (343)
.=.+.+.+|.+..|++ ++.++|+.+|++++...... ...+=+=+|-|+=
T Consensus 149 ~qr~~~~~Aa~~agl~--~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~ 200 (602)
T PF00012_consen 149 EQRQALRDAAELAGLN--VLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTF 200 (602)
T ss_dssp HHHHHHHHHHHHTT-E--EEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEE
T ss_pred hhhhcccccccccccc--cceeecccccccccccccccccccceeccccccceE
Confidence 3467788888877875 57899999999887544322 2333333455543
No 73
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=73.13 E-value=80 Score=33.65 Aligned_cols=53 Identities=19% Similarity=0.178 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCCceEEEEEechHHHHhcccccCC--CcEEEEEEccccceeEEcc
Q 019310 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNK--DAIAAVILGTGTNAAYVER 262 (343)
Q Consensus 208 ~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~~~--~~~iglIlGTGtNa~y~e~ 262 (343)
.+.+.+|....|++ ++.++|+.+|++++-..... ..++=+=||-||-=+=+.+
T Consensus 136 R~at~~A~~iaGl~--vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~ 190 (579)
T COG0443 136 RQATKDAARIAGLN--VLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLE 190 (579)
T ss_pred HHHHHHHHHHcCCC--eEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEE
Confidence 44555777666776 47999999999998777543 3333333666665544444
No 74
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=69.19 E-value=67 Score=33.96 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCCceEEEEEechHHHHhcccccC---CCcEEEEEEccccc
Q 019310 207 VVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN---KDAIAAVILGTGTN 256 (343)
Q Consensus 207 v~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~~---~~~~iglIlGTGtN 256 (343)
-.+.+.+|.+..|++ ++.++|+.+|+.++..... +...+=+=+|-||-
T Consensus 145 qR~a~~~Aa~~AGl~--v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~ 195 (595)
T TIGR02350 145 QRQATKDAGKIAGLE--VLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTF 195 (595)
T ss_pred HHHHHHHHHHHcCCc--eEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeE
Confidence 455566666655665 6899999999999755432 23333333555543
No 75
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=67.88 E-value=22 Score=34.68 Aligned_cols=61 Identities=15% Similarity=0.327 Sum_probs=36.8
Q ss_pred EEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCC
Q 019310 99 ALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEG 161 (343)
Q Consensus 99 aIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~ 161 (343)
|||+|-.++|++.++-.+++..+. ..-..++|......+.-.=.+.+++.|++.+++++..
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~--~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~~ 61 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLE--AFASIPLPPGAISDGEIVDPEALAEALKELLKENKIK 61 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEE--EEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT--
T ss_pred CeecCCCeEEEEEEEEcCCccEEE--EEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 699999999999888765532222 3356788887653332233566788888888877654
No 76
>PRK13326 pantothenate kinase; Reviewed
Probab=65.39 E-value=16 Score=34.95 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=32.6
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHH
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAA 149 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~ 149 (343)
..|+||+|-||+++++.+ ++ .++ ..|++++... .+.+++..++..
T Consensus 7 ~~L~IDiGNT~ik~glf~--~~--~l~----~~~r~~t~~~-~t~de~~~~l~~ 51 (262)
T PRK13326 7 SQLIIDIGNTSISFALYK--DN--KMQ----IFCKLKTKLD-LSFDELYSFLKE 51 (262)
T ss_pred EEEEEEeCCCeEEEEEEE--CC--EEE----EEEEeccCCC-CCHHHHHHHHhc
Confidence 379999999999999997 22 233 2477887654 577887777654
No 77
>PRK03657 hypothetical protein; Validated
Probab=62.95 E-value=27 Score=31.35 Aligned_cols=68 Identities=22% Similarity=0.425 Sum_probs=44.9
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhcCCCCCcceeeecccccCCCCc----ccc-cEEEEeeCCceEEEEEEEeCC
Q 019310 47 KCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGD----EKG-LFYALDLGGTNFRVLRVQLGG 116 (343)
Q Consensus 47 ~~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lP~G~----E~G-~fLaIDlGGTNlRv~lV~l~g 116 (343)
.+.++.+.|++ ++..-..+|-+|......+++..--|-+.. |+|. +-| .|+||...+. ...-..++.|
T Consensus 70 lLgV~~~~i~~~gavS~e~A~~MA~g~~~~~~aDiala~TG~AG-P~g~~~~kpvGtV~iai~~~~~-~~~~~~~~~g 145 (170)
T PRK03657 70 ILSVSQQSLERYSAVSEAVVAEMATGAIERADADISIAISGYGG-PEGGEDGTPAGTVWFAWNIKGQ-TYTARMHFAG 145 (170)
T ss_pred hcCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeccccC-CCCCCCCCCCeEEEEEEEcCCc-EEEEEEecCC
Confidence 45688888877 788888888888765444677777777754 6653 456 4889876653 3333333433
No 78
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=61.53 E-value=50 Score=33.45 Aligned_cols=101 Identities=19% Similarity=0.243 Sum_probs=57.0
Q ss_pred CcccccEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCee
Q 019310 91 GDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170 (343)
Q Consensus 91 G~E~G~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l 170 (343)
+...+.+|+||.|-|+.++.+++-++. +. ..|-.+... .+. -.+.+++-+++-+... ++..
T Consensus 131 ~~~~~~~LGID~GSTtTK~VLm~d~~~---I~----~~~~~~t~g-----~p~---~~~~l~~~le~l~~~~----~~I~ 191 (396)
T COG1924 131 EYQGMYTLGIDSGSTTTKAVLMEDGKE---IL----YGFYVSTKG-----RPI---AEKALKEALEELGEKL----EEIL 191 (396)
T ss_pred hhcCcEEEEEecCCcceeEEEEeCCCe---EE----EEEEEcCCC-----Chh---HHHHHHHHHHHcccCh----heee
Confidence 345568999999999999999866431 33 233333322 122 2455666666655431 2334
Q ss_pred eeeeeeeeeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHHHhcccccCCCcE
Q 019310 171 ELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAI 246 (343)
Q Consensus 171 ~lGftFSfPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~~~~~~ 246 (343)
.+|+| ..+ + .++..++ +.+ .++|-+++...+..|..|+..
T Consensus 192 ~~~~T----------------GYG----------R---~~v~~~~---~aD----~~~~Ei~ah~kgA~~f~p~~d 231 (396)
T COG1924 192 GLGVT----------------GYG----------R---NLVGAAL---GAD----KVVVEISAHAKGARYFAPDVD 231 (396)
T ss_pred eeeee----------------ccc----------H---HHhhhhh---cCC----cceeeeehhHHHHHHhCCCCc
Confidence 44433 222 1 2233333 344 667788888888888665444
No 79
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=61.10 E-value=19 Score=34.83 Aligned_cols=43 Identities=16% Similarity=0.328 Sum_probs=27.2
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHH
Q 019310 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAAL 151 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I 151 (343)
.++||+|||..|++..+.+++ .. -...|.+ ..+++.+|+-+..
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~---~~-----f~~~~~~----~~~~~~~~l~~~~ 44 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGR---RK-----FKTFETT----NIDKFIEWLKNQI 44 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCc---EE-----EEEeecc----cHHHHHHHHHHHH
Confidence 589999999999998765443 22 1223332 2347777776433
No 80
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=58.69 E-value=1.6e+02 Score=31.50 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCCceEEEEEechHHHHhcccccC--CCcEEEEEEccccce
Q 019310 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGTNA 257 (343)
Q Consensus 208 ~~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~~--~~~~iglIlGTGtNa 257 (343)
.+.+.+|.+..|++ ++.++|+.+|+.++..... ....+=+=+|-||=-
T Consensus 157 R~a~~~Aa~~AGl~--v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~D 206 (595)
T PRK01433 157 RGEVMLAAKIAGFE--VLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFD 206 (595)
T ss_pred HHHHHHHHHHcCCC--EEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEE
Confidence 44556666555665 6899999999998754432 233333345555543
No 81
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=58.50 E-value=31 Score=30.83 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=32.3
Q ss_pred EEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhc
Q 019310 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATE 158 (343)
Q Consensus 98 LaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~ 158 (343)
++||.|||+-=+.+++-.++ ++ ...+.|+. .+++..=|.+.+...+...
T Consensus 2 igIDvGGT~TD~v~~d~~~~---~~----~~~K~~Tt-----~~d~~~gi~~al~~l~~~~ 50 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTG---VV----ATAKVPTT-----PDDPAEGILEALDALLEES 50 (176)
T ss_pred eeEecCCCcEEEEEEeCCCC---EE----EEEEeCCC-----CcCHHHHHHHHHHhhhccc
Confidence 79999999999999977532 33 23455654 3455566666666665543
No 82
>PRK13320 pantothenate kinase; Reviewed
Probab=57.94 E-value=27 Score=32.92 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=16.3
Q ss_pred EEEEeeCCceEEEEEEE
Q 019310 97 FYALDLGGTNFRVLRVQ 113 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~ 113 (343)
+|+||+|.|+++.++++
T Consensus 4 ~L~iDiGNT~ik~~~~~ 20 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFE 20 (244)
T ss_pred EEEEEeCCCcEEEEEEE
Confidence 79999999999999997
No 83
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=55.52 E-value=63 Score=34.43 Aligned_cols=16 Identities=44% Similarity=0.513 Sum_probs=15.0
Q ss_pred EEEeeCCceEEEEEEE
Q 019310 98 YALDLGGTNFRVLRVQ 113 (343)
Q Consensus 98 LaIDlGGTNlRv~lV~ 113 (343)
+|||||.||-.|+.++
T Consensus 2 iGIDlGTtns~va~~~ 17 (599)
T TIGR01991 2 VGIDLGTTNSLVASVR 17 (599)
T ss_pred EEEEEccccEEEEEEE
Confidence 7999999999999986
No 84
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=54.28 E-value=62 Score=31.57 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=17.3
Q ss_pred ccEEEEeeCCceEEEEEEE
Q 019310 95 GLFYALDLGGTNFRVLRVQ 113 (343)
Q Consensus 95 G~fLaIDlGGTNlRv~lV~ 113 (343)
-.|++||+|-|+.|+++++
T Consensus 32 m~~~GIDiGStt~K~Vlld 50 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVC 50 (293)
T ss_pred cEEEEEEeCchhEEEEEEe
Confidence 3689999999999999997
No 85
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=52.03 E-value=61 Score=31.17 Aligned_cols=62 Identities=24% Similarity=0.259 Sum_probs=41.8
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCccc-CC-chHHHHHHHHHHHHHHHhc
Q 019310 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMT-GS-SHELFDYIAAALAKFVATE 158 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~-~~-~~~lFd~IA~~I~~fl~~~ 158 (343)
|-+||+|-.++|..+.++.+....++.......++.+.+.. +. .++-.+.+.+++.+|.+..
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~ 65 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELL 65 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999864332333333345666666532 21 4577778888888887643
No 86
>PRK13317 pantothenate kinase; Provisional
Probab=50.68 E-value=14 Score=35.62 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.0
Q ss_pred ccEEEEeeCCceEEEEEEEeC
Q 019310 95 GLFYALDLGGTNFRVLRVQLG 115 (343)
Q Consensus 95 G~fLaIDlGGTNlRv~lV~l~ 115 (343)
+..++||+|||..|++.++-+
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~ 22 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEK 22 (277)
T ss_pred CceEEEEeCcccEEEEEEcCC
Confidence 467999999999999998753
No 87
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=50.49 E-value=44 Score=29.06 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=43.4
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCC
Q 019310 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEG 161 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~ 161 (343)
..|++|=|+..++|++.+.+....+......++.+++.. +.+++=+|-. .++.+++++..+
T Consensus 3 vCGVELkgneaii~ll~~~~~~~~~pdcr~~k~~l~~~~---~~~~vr~Fq~-~f~kl~~dy~Vd 63 (138)
T PF11215_consen 3 VCGVELKGNEAIICLLSLDDGLFQLPDCRVRKFSLSDDN---STEEVRKFQF-TFAKLMEDYKVD 63 (138)
T ss_pred EEEEEEecCeEEEEEEecCCCceECCccceeEEEcCCCc---cHHHHHHHHH-HHHHHHHHcCCC
Confidence 578999999999999998765444555556788888754 3455555543 477788877653
No 88
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=49.45 E-value=92 Score=29.72 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=29.6
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHH
Q 019310 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAA 149 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~ 149 (343)
+|+||+|-|++.+++.+ ++ ... ..|+++++-. .+.+++..++.+
T Consensus 2 ~L~iDiGNT~~~~a~~~-~~---~~~----~~~r~~t~~~-~~~del~~~~~~ 45 (251)
T COG1521 2 LLLIDIGNTRIVFALYE-GG---KVV----QTWRLATEDL-LTEDELGLQLHN 45 (251)
T ss_pred eEEEEeCCCeEEEEEec-CC---eEE----EEEeeccccc-ccHHHHHHHHHH
Confidence 69999999999999997 22 233 3577777654 345566544443
No 89
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=49.10 E-value=21 Score=36.43 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.6
Q ss_pred cEEEEeeCCceEEEEEEEeCC
Q 019310 96 LFYALDLGGTNFRVLRVQLGG 116 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g 116 (343)
+|++||+|+|+.++++++.++
T Consensus 3 y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 3 CFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred eEEEEEcCchhEEEEEEcCCC
Confidence 689999999999999998644
No 90
>PRK10854 exopolyphosphatase; Provisional
Probab=47.70 E-value=1.1e+02 Score=32.06 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=44.3
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCC--chHHHHHHHHHHHHHHHh
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGS--SHELFDYIAAALAKFVAT 157 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~--~~~lFd~IA~~I~~fl~~ 157 (343)
.|-+||+|-.++|..+++..+..-.++....+..++.+.+...+ .++-.+...+++..|.+.
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~ 75 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAER 75 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 47899999999999999986543334444445666666553222 468889999999998764
No 91
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=46.95 E-value=2.4e+02 Score=26.16 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccccc-eeEEcc
Q 019310 209 GELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTN-AAYVER 262 (343)
Q Consensus 209 ~lL~~al~r~~l~v~vvaIvNDTvatlla~~y~~~~~~iglIlGTGtN-a~y~e~ 262 (343)
+.+.++++.-|++ ++.++|+.+|+.++.... ..+=+=+|.|+- .+.+++
T Consensus 78 ~a~~~a~~~aGl~--~~~li~ep~Aaa~~~~~~---~~~vvDiGggtt~i~i~~~ 127 (239)
T TIGR02529 78 KVIVNVIESAGIE--VLHVLDEPTAAAAVLQIK---NGAVVDVGGGTTGISILKK 127 (239)
T ss_pred HHHHHHHHHcCCc--eEEEeehHHHHHHHhcCC---CcEEEEeCCCcEEEEEEEC
Confidence 4556777766665 589999999998863222 223444555543 344443
No 92
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=46.70 E-value=1.4e+02 Score=30.13 Aligned_cols=59 Identities=12% Similarity=0.167 Sum_probs=32.9
Q ss_pred ccEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCC-CcccCCchHHHHHHHHHHHHHHHh
Q 019310 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPP-HLMTGSSHELFDYIAAALAKFVAT 157 (343)
Q Consensus 95 G~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~-~~~~~~~~~lFd~IA~~I~~fl~~ 157 (343)
..+.|||+|-|.+++.+.++.+++...+. - .-..|. .+..|.-.+ .+-.+++|++.+++
T Consensus 8 ~~i~~lDIGsskv~~vv~~~~~~~~~~i~-g--~~~~~s~gi~~G~I~d-~~~~~~aI~~av~~ 67 (420)
T PRK09472 8 KLVVGLEIGTAKVAALVGEVLPDGMVNII-G--VGSCPSRGMDKGGVND-LESVVKCVQRAIDQ 67 (420)
T ss_pred CEEEEEEcccceEEEEEEEEcCCCCEEEE-E--EEEccCCCccCCEEEc-HHHHHHHHHHHHHH
Confidence 36889999999999998887644322221 1 122343 344343222 34455555555554
No 93
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=45.54 E-value=1.2e+02 Score=29.10 Aligned_cols=21 Identities=14% Similarity=0.428 Sum_probs=18.2
Q ss_pred cEEEEeeCCceEEEEEEEeCC
Q 019310 96 LFYALDLGGTNFRVLRVQLGG 116 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g 116 (343)
.|++||+|-|+.|+.+++.++
T Consensus 2 ~~~GIDiGStttK~Vlid~~~ 22 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDG 22 (262)
T ss_pred eEEEEEcCcccEEEEEEecCC
Confidence 479999999999999998644
No 94
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=45.27 E-value=99 Score=31.64 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=16.1
Q ss_pred EEEeeCCceEEEEEEEeC
Q 019310 98 YALDLGGTNFRVLRVQLG 115 (343)
Q Consensus 98 LaIDlGGTNlRv~lV~l~ 115 (343)
+|+|+|-|+++..+++|.
T Consensus 4 iAvDiGTTti~~~L~dl~ 21 (412)
T PF14574_consen 4 IAVDIGTTTIAAYLVDLE 21 (412)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEcchhheeeEEEECC
Confidence 799999999999999995
No 95
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=44.51 E-value=48 Score=28.86 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=18.0
Q ss_pred ccEEEEeeCCceEEEEEEEeCC
Q 019310 95 GLFYALDLGGTNFRVLRVQLGG 116 (343)
Q Consensus 95 G~fLaIDlGGTNlRv~lV~l~g 116 (343)
+.+||+|+|-..+=|++-+..+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 5689999999988888876643
No 96
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=43.75 E-value=1.3e+02 Score=25.83 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=17.8
Q ss_pred cccEEEEeeCCceEEEEEEEeCC
Q 019310 94 KGLFYALDLGGTNFRVLRVQLGG 116 (343)
Q Consensus 94 ~G~fLaIDlGGTNlRv~lV~l~g 116 (343)
.+.+||||+|-..+=+++.+..+
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~~ 25 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPLG 25 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCCC
Confidence 45699999999888888776543
No 97
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=42.35 E-value=64 Score=23.44 Aligned_cols=34 Identities=6% Similarity=0.123 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 019310 35 ARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHA 68 (343)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~ 68 (343)
+.++++++.+.+.|.++.++++.=+..|..+|.+
T Consensus 30 ~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~ 63 (68)
T PF05402_consen 30 RTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLRE 63 (68)
T ss_dssp S-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999888999988875
No 98
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=42.20 E-value=22 Score=34.60 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.6
Q ss_pred cccEEEEeeCCceEEEEEEEeCCC
Q 019310 94 KGLFYALDLGGTNFRVLRVQLGGR 117 (343)
Q Consensus 94 ~G~fLaIDlGGTNlRv~lV~l~g~ 117 (343)
...|++||=|.||||+-+++-+|.
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~dg~ 27 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRGDGA 27 (306)
T ss_pred CceEEEEecCCccEEEEEEcCCcc
Confidence 467999999999999999977654
No 99
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=41.74 E-value=31 Score=33.98 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=22.2
Q ss_pred EEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCC
Q 019310 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPH 134 (343)
Q Consensus 98 LaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~ 134 (343)
|++|+||-|+|+++++-+|. +... ..+..|-.
T Consensus 1 ~G~DiGGA~~K~a~~~~~g~---~~~v--~~~~~plW 32 (318)
T TIGR03123 1 LGIDIGGANTKAAELDEDGR---IKEV--HQLYCPLW 32 (318)
T ss_pred CccccccceeeeEEecCCCc---eeEE--EEecCccc
Confidence 58999999999999866554 2322 24566654
No 100
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=40.82 E-value=97 Score=26.44 Aligned_cols=102 Identities=15% Similarity=0.237 Sum_probs=54.5
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeee
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGft 175 (343)
++||||+|-..+=+|+-+-.+. +.... -.|+. .+.+.+++.|.+.|.+ .. +-++-
T Consensus 2 riL~lD~G~kriGiAvsd~~~~---~a~pl---~~i~~----~~~~~~~~~l~~li~~----~~-----------i~~iV 56 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLGI---IASPL---ETIPR----RNREKDIEELKKLIEE----YQ-----------IDGIV 56 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTTS---SEEEE---EEEEE----CCCCCCHHHHHHHHHH----CC-----------ECEEE
T ss_pred eEEEEEeCCCeEEEEEecCCCC---eEeee---EEEEC----CCCchHHHHHHHHHHH----hC-----------CCEEE
Confidence 5899999999888888876543 11110 11221 2224566666555444 32 34566
Q ss_pred eeeeeeeccCCceEEeeeccccccCCCCCCcHHHHHHHHHHHc--CCCceEEEEEechHHHHhcccc
Q 019310 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERI--GLDMRVAALVNDTIGTLAGGRY 240 (343)
Q Consensus 176 FSfPv~q~~i~~g~Li~WtKgF~~~~~~G~dv~~lL~~al~r~--~l~v~vvaIvNDTvatlla~~y 240 (343)
+..|.+.. |+.-.+++ -+..+-+.|+++ ++| |.++|-.--|-.+...
T Consensus 57 vGlP~~~~----G~~~~~~~-----------~v~~f~~~L~~~~~~ip---V~~~DEr~TT~~A~~~ 105 (135)
T PF03652_consen 57 VGLPLNMD----GSESEQAR-----------RVRKFAEELKKRFPGIP---VILVDERLTTKEAERR 105 (135)
T ss_dssp EEEEBBCT----SSC-CCHH-----------HHHHHHHHHHHHH-TSE---EEEEECSCSHHCCHCC
T ss_pred EeCCcccC----CCccHHHH-----------HHHHHHHHHHHhcCCCc---EEEECCChhHHHHHHH
Confidence 66776652 22223333 334444555443 666 6777766555555443
No 101
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=37.74 E-value=1.4e+02 Score=31.05 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=43.9
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCccc-CC-chHHHHHHHHHHHHHHHhc
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMT-GS-SHELFDYIAAALAKFVATE 158 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~-~~-~~~lFd~IA~~I~~fl~~~ 158 (343)
.|-+||+|-.++|..+++..+..-.++....+..++.+.+.. +. .++=.+...++++.|.+..
T Consensus 7 ~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~ 71 (496)
T PRK11031 7 LYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERL 71 (496)
T ss_pred EEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHH
Confidence 477999999999999999865332344334456667655432 21 4688889999999997643
No 102
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=37.70 E-value=1.9e+02 Score=24.99 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=33.8
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcC
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~ 159 (343)
..||||.|-+|+=.++++..++....+ .....+.+.. .+..+=...|.+.|.+++....
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~--~~g~i~t~~~---~~~~~rl~~I~~~l~~~i~~~~ 59 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYL--ASGVIRTSSD---APLPSRLKTIYDGLNEVIDQFQ 59 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEE--EeeEEECCCC---CCHHHHHHHHHHHHHHHHHHhC
Confidence 369999999999999998866422122 1122333321 1222334456666666666553
No 103
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=37.35 E-value=67 Score=27.55 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=40.7
Q ss_pred eehhhHHHH---HHHHHHhhhhhccc---chHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcC
Q 019310 9 TVVCAAAVC---AAAALVVRRRMKST---GRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLAS 72 (343)
Q Consensus 9 ~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~ 72 (343)
+.+|+.+++ ++..++.+++.-.- -.-+.++++.++.- +-.+++++.+....+|...|++-|..
T Consensus 22 ~~~~~~~~~~~a~~s~~~~~~~~P~iV~FDmK~Tld~F~~Q~~-~~~lte~q~e~lt~rF~~aL~~~L~~ 90 (128)
T PRK13717 22 VPGCLAMVLLNAAVSYGIVRLNAPVTAAFNMKQTVDAFFDSAS-QKQLSEAQSKALSARFNTALEASLQA 90 (128)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeEEEEehHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334543333 45556666662221 12234666666664 44579999999999999999999963
No 104
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=36.92 E-value=84 Score=28.42 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=15.3
Q ss_pred EEEEeeCCceEEEEEEEe
Q 019310 97 FYALDLGGTNFRVLRVQL 114 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l 114 (343)
+|.||+|-|++|+++++-
T Consensus 1 ~L~iDiGNT~ik~~~~~~ 18 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDG 18 (206)
T ss_dssp EEEEEE-SSEEEEEEEET
T ss_pred CEEEEECCCeEEEEEEEC
Confidence 689999999999999954
No 105
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=34.31 E-value=99 Score=24.41 Aligned_cols=36 Identities=6% Similarity=0.162 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 019310 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (343)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (343)
.++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 4 ~eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~g 39 (90)
T PRK10753 4 TQLIDVIADKAELSKTQAKAALESTLAAITESLKEG 39 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 356777777788999999999999999999999764
No 106
>PRK11677 hypothetical protein; Provisional
Probab=34.10 E-value=1.2e+02 Score=26.29 Aligned_cols=63 Identities=10% Similarity=0.039 Sum_probs=31.1
Q ss_pred eehhhHHHHHHHHHHhhhhhcccchHHH-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcC
Q 019310 9 TVVCAAAVCAAAALVVRRRMKSTGRWAR-----------AVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLAS 72 (343)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~ 72 (343)
+++++.++.++|+++.|.-.+..++.++ +++.=+++...|.-+.+-|..+++..++ +.+-|+.
T Consensus 6 a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~-Ly~HlA~ 79 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQ-LYQHMAK 79 (134)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3456777777887777753322222222 2222333444444455555555554443 5555543
No 107
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=34.10 E-value=77 Score=26.43 Aligned_cols=45 Identities=16% Similarity=0.321 Sum_probs=30.9
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHH
Q 019310 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAA 150 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~ 150 (343)
|+|||+|-..+-+++++-.|. .. ....++.+. .+..+|++|+...
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~---~~----~~~~~~~~~--~~~~~l~~~l~~~ 45 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGE---KL----RRFKFENDP--AGLEKLLDWLASL 45 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCc---EE----EEEEEeccc--cchhHHhhhhccc
Confidence 799999999999999877662 22 234455433 2456788888763
No 108
>PRK03661 hypothetical protein; Validated
Probab=33.93 E-value=1.4e+02 Score=26.53 Aligned_cols=56 Identities=23% Similarity=0.387 Sum_probs=38.0
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhcCCCCCcceeeecccccCCCC----cccc-cEEEEeeC
Q 019310 47 KCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDLG 103 (343)
Q Consensus 47 ~~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lP~G----~E~G-~fLaIDlG 103 (343)
.+.+|.+.|++ ++..-..+|-+|....-.+++..--|-+.. |+| ++-| .|++|...
T Consensus 64 lLgV~~~~i~~~gavS~e~a~~MA~g~~~~~~ad~~ia~TG~AG-P~g~~~~kpvGtv~i~i~~~ 127 (164)
T PRK03661 64 MIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAG-PDGGSEEKPVGTVWFGFASA 127 (164)
T ss_pred HcCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEecccCC-CCCCCCCCCceEEEEEEEeC
Confidence 45678888877 777888888888765444667666676654 654 3556 48888653
No 109
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=33.36 E-value=1e+02 Score=24.46 Aligned_cols=36 Identities=8% Similarity=0.177 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 019310 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (343)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (343)
.++++.+.+...++..+.+.+.+.|.++|.+.|...
T Consensus 5 ~eli~~ia~~~~~s~~~v~~vv~~~~~~i~~~L~~g 40 (96)
T TIGR00987 5 AEMSEYLFDELGLSKREAKELVELFFEEIRRALENG 40 (96)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 466777777888999999999999999999999764
No 110
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=33.01 E-value=1e+02 Score=24.50 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 019310 37 AVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (343)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (343)
..++++.+.+...++..+...+.+.|.++|.+.|...
T Consensus 5 k~el~~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 41 (99)
T PRK00285 5 KADLAEALFEKVGLSKREAKELVELFFEEIRDALENG 41 (99)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3567788888888999999999999999999999763
No 111
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=32.36 E-value=33 Score=33.82 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=17.9
Q ss_pred cccEEEEeeCCceEEEEEEE
Q 019310 94 KGLFYALDLGGTNFRVLRVQ 113 (343)
Q Consensus 94 ~G~fLaIDlGGTNlRv~lV~ 113 (343)
.+..|.+|+|||+..+++|.
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCCEEEEEcCccceeeEEec
Confidence 56699999999999999984
No 112
>PF13941 MutL: MutL protein
Probab=31.66 E-value=74 Score=33.03 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=35.8
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHh
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVAT 157 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~ 157 (343)
.||++|+|.|.-|+.+|++......++-+ -.-|+.+. + .++..=+-+++.+.-+.
T Consensus 1 ~~L~~DiGST~Tk~~l~d~~~~~~~~ig~----a~apTTv~--~-~Dv~~G~~~A~~~l~~~ 55 (457)
T PF13941_consen 1 DVLVVDIGSTYTKVTLFDLVDGEPRLIGQ----AEAPTTVE--P-GDVTIGLNNALEQLEEQ 55 (457)
T ss_pred CEEEEEeCCcceEEeEEeccCCccEEEEE----EeCCCCcC--c-ccHHHHHHHHHHHHHHh
Confidence 38999999999999999965554444432 33566663 2 45555566666655443
No 113
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=31.35 E-value=2.1e+02 Score=24.69 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=29.5
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHHHHHHHHHHHHHHhcCC
Q 019310 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lFd~IA~~I~~fl~~~~~ 160 (343)
.|+||-|-++.-.++++..++.-..+ .....+.+.. .+..+=...|.+.+.++++++..
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i--~~G~I~t~~~---~~~~~Rl~~I~~~l~~li~~~~P 59 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLI--DYGTIKTSSK---DSLPERLKEIYEELEELIEEYNP 59 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEE--EEEEEE---S-----HHHHHHHHHHHHHHHHHHH--
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEE--EeCeEECCCC---CCHHHHHHHHHHHHHHHHHhhCC
Confidence 48999999999999999966532222 1122222222 12223334555556666665543
No 114
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=30.87 E-value=1.1e+02 Score=23.48 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 019310 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (343)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (343)
+++++++.+...++..+...+.+.|.++|.+.|...
T Consensus 4 ~eli~~ia~~~~~~~~~v~~vl~~l~~~i~~~L~~g 39 (90)
T smart00411 4 SELIDAIAEKAGLSKKDAKAAVDAFLEIITEALKKG 39 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 567788888888999999999999999999999763
No 115
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.76 E-value=99 Score=26.69 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHhhhhhcccchHHHHHH-----------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcC
Q 019310 11 VCAAAVCAAAALVVRRRMKSTGRWARAVA-----------ILKEMEEKCGTPIGKLRQVADAMTVEMHAGLAS 72 (343)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~ 72 (343)
..+.++.++++++.|=-..+-++..+++. .=++++..|.-+.|-|..++...++ +.+-++.
T Consensus 13 igLvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dYqk-lyqHmA~ 84 (138)
T COG3105 13 IGLVVGIIIGALIARLTNRKLKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDYQK-LYQHMAK 84 (138)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 34666777887777654333233333333 3334555555666666666665554 5555544
No 116
>COG1546 CinA Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only]
Probab=30.59 E-value=2.2e+02 Score=25.44 Aligned_cols=68 Identities=26% Similarity=0.548 Sum_probs=46.2
Q ss_pred cCCCHHHHHH---HHHHHHHHHHHhhcCCCCCcceeeecccccCCCCc----ccc-cEEEEeeCCceEEEEEEEeCCC
Q 019310 48 CGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGD----EKG-LFYALDLGGTNFRVLRVQLGGR 117 (343)
Q Consensus 48 ~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lP~G~----E~G-~fLaIDlGGTNlRv~lV~l~g~ 117 (343)
+.++.+.|.+ ++..-..||-+|...+..+++..--|-+.. |+|. +-| .|+++..||+ ..+-.++++|+
T Consensus 65 LgV~~~tL~~~GaVSe~~a~eMA~Ga~~~~~ad~aiaiTGiAG-P~Gg~~~kpvGtV~ig~~~~~~-~~~~~~~~~g~ 140 (162)
T COG1546 65 LGVSPETLEEHGAVSEEVAREMARGAKERAGADIAIAITGIAG-PDGGSEGKPVGTVYIGLAIGGE-AITIRVNFGGD 140 (162)
T ss_pred hCCCHHHHHHcCCcCHHHHHHHHHHHHHhcCCCEEEEEEEeeC-CCCCCCCCCceEEEEEEEcCCc-eEEEEEEcCCC
Confidence 4577776654 778888999999876655777777788865 8843 456 4888888443 33445555554
No 117
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.35 E-value=1.3e+02 Score=25.39 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=18.4
Q ss_pred ehhhHHHHHHHHHHhhhhhcccchHHHHHHHHH
Q 019310 10 VVCAAAVCAAAALVVRRRMKSTGRWARAVAILK 42 (343)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 42 (343)
.+++.++.++|+++.|...++.+..+++++-|+
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~ 35 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSNQQKQAKLEQELE 35 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 356677777887777665544333333444333
No 118
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.77 E-value=42 Score=36.46 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC-Ccceeeecc--------cccC--------CC----------CcccccEEEEeeCCce
Q 019310 54 KLRQVADAMTVEMHAGLASEGG-SKLKMLISY--------VDNL--------PT----------GDEKGLFYALDLGGTN 106 (343)
Q Consensus 54 ~L~~i~~~f~~em~~gL~~~~~-s~l~MlPs~--------v~~l--------P~----------G~E~G~fLaIDlGGTN 106 (343)
.|..+.++|.+.+++.|...+- ..+.|+-|. .... |. |...|..+++|+|||+
T Consensus 210 ~L~pi~~~yl~~v~~~l~~~g~~~~l~~m~sdGgl~~~~~a~~~pv~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTS 289 (674)
T COG0145 210 YLSPILRRYLEAVKDALKERGIKARLMVMQSDGGLVSAEEAREKPVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTS 289 (674)
T ss_pred eehHHHHHHHHHHHHHHHhcCCCceeEEEecCCccccHHHHhcCCeeeEeeccHHHHHHHHHhcccccCCEEEEEcCCcc
Confidence 5777888888888887754321 122222211 1112 22 4555679999999999
Q ss_pred EEEEEEE
Q 019310 107 FRVLRVQ 113 (343)
Q Consensus 107 lRv~lV~ 113 (343)
..++++.
T Consensus 290 tDva~i~ 296 (674)
T COG0145 290 TDVALII 296 (674)
T ss_pred eeeeeee
Confidence 9999986
No 119
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=29.70 E-value=1.2e+02 Score=23.30 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 019310 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (343)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (343)
.++++.+.+...++..+...+.+.|.++|.+.|...
T Consensus 4 ~eli~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 39 (90)
T PF00216_consen 4 KELIKRIAEKTGLSKKDVEAVLDALFDVIKEALKEG 39 (90)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 467777778888999999999999999999999753
No 120
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=27.87 E-value=1.5e+02 Score=23.42 Aligned_cols=36 Identities=8% Similarity=0.180 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCC
Q 019310 39 AILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEG 74 (343)
Q Consensus 39 ~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~ 74 (343)
++++.+.+...++..+...+.+.|.+.|.+.|..++
T Consensus 5 eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~~~ 40 (90)
T PRK10664 5 QLIDKIAAGADISKAAAGRALDAIIASVTESLKEGD 40 (90)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 566777777789999999999999999999998753
No 121
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=27.82 E-value=2.1e+02 Score=30.64 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=20.8
Q ss_pred cccEEEEeeCCceEEEEEEEeCCC
Q 019310 94 KGLFYALDLGGTNFRVLRVQLGGR 117 (343)
Q Consensus 94 ~G~fLaIDlGGTNlRv~lV~l~g~ 117 (343)
.+.++.+|+||.++-|.++++.+.
T Consensus 200 ~~~vlV~DlGGGT~DvSv~~~~~~ 223 (616)
T PRK05183 200 EGVIAVYDLGGGTFDISILRLSKG 223 (616)
T ss_pred CCEEEEEECCCCeEEEEEEEeeCC
Confidence 457999999999999999998653
No 122
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=27.81 E-value=38 Score=31.72 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=15.4
Q ss_pred HHHHhcccccCCCcEEEE
Q 019310 232 IGTLAGGRYHNKDAIAAV 249 (343)
Q Consensus 232 vatlla~~y~~~~~~igl 249 (343)
+|.|.|.+-++|++.||.
T Consensus 73 iA~LsA~RSkDpntqVGa 90 (230)
T KOG3127|consen 73 IAFLSAKRSKDPNTQVGA 90 (230)
T ss_pred HHHHHHHhccCcccceee
Confidence 788888888999999983
No 123
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=27.49 E-value=58 Score=31.31 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=14.6
Q ss_pred cEEEEeeCCceEEEEEEE
Q 019310 96 LFYALDLGGTNFRVLRVQ 113 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~ 113 (343)
..|.+|+|||+.-++++.
T Consensus 78 ~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp SEEEEEE-SS-EEEEEEE
T ss_pred CEEEEeCCCCEEEEEEEE
Confidence 589999999999999994
No 124
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=27.48 E-value=47 Score=28.99 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=38.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCceEEEEEech-----HHHHhccccc-CCCcEEEEEEccccceeEEcc
Q 019310 200 EDTVGEDVVGELTKAMERIGLDMRVAALVNDT-----IGTLAGGRYH-NKDAIAAVILGTGTNAAYVER 262 (343)
Q Consensus 200 ~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDT-----vatlla~~y~-~~~~~iglIlGTGtNa~y~e~ 262 (343)
+|--|.++++.|.+.|+.+|+.|.=..- +|+ ++..++.+.. ++...-=+|+|||.+.++.-+
T Consensus 7 sDhaG~~lK~~l~~~L~~~G~eV~D~G~-~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~siaAN 74 (142)
T PRK08621 7 ADKAGFELKEVVKDYLEDNKYEVVDVTE-EGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGSFMVAT 74 (142)
T ss_pred eCcchHHHHHHHHHHHHHCCCEEEECCC-CCCCCcHHHHHHHHHHHHcCCCceEEEEcCCChhhhhhhh
Confidence 3456788999999999998876421111 332 2333333333 334455578999999988743
No 125
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=27.48 E-value=87 Score=26.27 Aligned_cols=49 Identities=8% Similarity=0.020 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC--CCCcceeeecccc
Q 019310 37 AVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE--GGSKLKMLISYVD 86 (343)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~--~~s~l~MlPs~v~ 86 (343)
++++.++.- +-.+++++.++...+|...|++-|+.. .+..+-+-+..|.
T Consensus 43 ld~F~~q~~-~~~lte~q~~~~~~rF~~~L~~~L~~yq~~H~~vILvspAVv 93 (112)
T TIGR02744 43 LDAFFDSAS-QKKLSEAQQKALLGRFNALLEAELQAWQAQHHAIILVSPAVV 93 (112)
T ss_pred HHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEEechhhh
Confidence 455555443 445799999999999999999999641 2234555555553
No 126
>TIGR00199 cinA_cterm competence/damage-inducible protein CinA C-terminal domain. CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain.
Probab=27.28 E-value=2.6e+02 Score=24.22 Aligned_cols=55 Identities=22% Similarity=0.397 Sum_probs=35.7
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhcCCCCCcceeeecccccCCCC----cccc-cEEEEee
Q 019310 47 KCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDL 102 (343)
Q Consensus 47 ~~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lP~G----~E~G-~fLaIDl 102 (343)
.+.+|.+.|++ ++.....+|-+|......+++.---|-+.. |+| .+-| .|++|-.
T Consensus 52 lLgV~~~~i~~~gavS~e~a~~MA~g~~~~~~adi~ia~TG~AG-P~~~~~~~pvGtv~ial~~ 114 (146)
T TIGR00199 52 LLGVSQETLARFGAVSEECAAEMALGVKERFGADVGIAISGIAG-PDGGEEEKPGGTVWFIWII 114 (146)
T ss_pred HhCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeeccCC-CCCCCCCCCCeEEEEEEEe
Confidence 34577777776 778888888888765444666666666643 654 3455 4777754
No 127
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=26.54 E-value=1.5e+02 Score=22.53 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcC
Q 019310 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLAS 72 (343)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~ 72 (343)
.++.+.+.+...++..+...+.+.|.++|.+.|..
T Consensus 3 ~~l~~~ia~~~~~~~~~v~~vl~~~~~~i~~~L~~ 37 (87)
T cd00591 3 SELIEAIAEKTGLSKKDAEAAVDAFLDVITEALAK 37 (87)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 35677777777899999999999999999999975
No 128
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=26.51 E-value=39 Score=29.65 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=39.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCce-EEEEEec------hHHHHhcccccC-CCcEEEEEEccccceeEEcc
Q 019310 200 EDTVGEDVVGELTKAMERIGLDMR-VAALVND------TIGTLAGGRYHN-KDAIAAVILGTGTNAAYVER 262 (343)
Q Consensus 200 ~~~~G~dv~~lL~~al~r~~l~v~-vvaIvND------Tvatlla~~y~~-~~~~iglIlGTGtNa~y~e~ 262 (343)
+|--|.++++.|.+.|+++|++|. +-.-..| -+|..++.+..+ +..+-=+|+|||.+.++.-+
T Consensus 7 sDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaAN 77 (148)
T PRK05571 7 SDHAGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAAN 77 (148)
T ss_pred eCCchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHh
Confidence 445678899999999999887632 1111123 244444544433 34455578999999988743
No 129
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=26.45 E-value=3.4e+02 Score=28.24 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.7
Q ss_pred ccccEEEEeeCCceEEEEEEEeCCC
Q 019310 93 EKGLFYALDLGGTNFRVLRVQLGGR 117 (343)
Q Consensus 93 E~G~fLaIDlGGTNlRv~lV~l~g~ 117 (343)
..+.++.+|+||+++-+.+++....
T Consensus 186 ~~~~vlv~D~Gggt~dvs~~~~~~~ 210 (602)
T PF00012_consen 186 KGKTVLVVDFGGGTFDVSVVEFSNG 210 (602)
T ss_dssp SEEEEEEEEEESSEEEEEEEEEETT
T ss_pred cccceeccccccceEeeeehhcccc
Confidence 5668999999999999999998643
No 130
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=25.39 E-value=74 Score=33.56 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=29.6
Q ss_pred EEechHHHHhcccccCCCcEEEEEEccccceeEEcccCc
Q 019310 227 LVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHA 265 (343)
Q Consensus 227 IvNDTvatlla~~y~~~~~~iglIlGTGtNa~y~e~~~~ 265 (343)
|==|++|..++....+ +..|.++..-|||+=.......
T Consensus 311 VGADAla~il~tg~~~-sdevslvtD~GTNaEivlg~~~ 348 (614)
T COG3894 311 VGADALAMILSTGIHD-SDEVSLVTDYGTNAEIVLGNRD 348 (614)
T ss_pred cchHHHHHHHhccCcc-ccceEEEEeecccceEEeccCC
Confidence 3458888888887755 5679999999999988876543
No 131
>KOG1621 consensus 1D-myo-inositol-triphosphate 3-kinase A [Lipid transport and metabolism]
Probab=25.04 E-value=1.8e+02 Score=29.58 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcC
Q 019310 35 ARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLAS 72 (343)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~ 72 (343)
+.++++..-|+.-|....+.|++..+++.+ |++.|..
T Consensus 347 rt~EqVt~~f~dF~~g~~~vlq~yi~rLk~-mR~alE~ 383 (458)
T KOG1621|consen 347 RTVEQVTTTFMDFFGGQRSVLQQYIERLKS-MRKALEH 383 (458)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHHHH-HHHHhhh
Confidence 357888888888888888889999998876 9999964
No 132
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=24.93 E-value=2.5e+02 Score=29.93 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=21.2
Q ss_pred ccccEEEEeeCCceEEEEEEEeCCC
Q 019310 93 EKGLFYALDLGGTNFRVLRVQLGGR 117 (343)
Q Consensus 93 E~G~fLaIDlGGTNlRv~lV~l~g~ 117 (343)
..+.++.+|+||.++-+.++++.+.
T Consensus 179 ~~~~vlV~DlGgGT~DvSi~~~~~~ 203 (599)
T TIGR01991 179 SEGIYAVYDLGGGTFDVSILKLTKG 203 (599)
T ss_pred CCCEEEEEEcCCCeEEEEEEEEcCC
Confidence 3457999999999999999998643
No 133
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=24.75 E-value=5.1e+02 Score=25.22 Aligned_cols=37 Identities=8% Similarity=0.229 Sum_probs=24.2
Q ss_pred CCceEEEEEechHHHHhcccccCCCcEEEEEEccccceeEEc
Q 019310 220 LDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVE 261 (343)
Q Consensus 220 l~v~vvaIvNDTvatlla~~y~~~~~~iglIlGTGtNa~y~e 261 (343)
+++.-+.+++++++++++.. ..+ |+|+.-|.+.+.+.
T Consensus 122 ~~~~~v~~~~~~~~a~~~~g---~~~--~lVVDiG~~~t~v~ 158 (373)
T smart00268 122 FNFPALYIAIQAVLSLYASG---RTT--GLVIDSGDGVTHVV 158 (373)
T ss_pred CCCCeEEEeccHHHHHHhCC---CCE--EEEEecCCCcceEE
Confidence 44556889999999998864 233 66666665554443
No 134
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=24.65 E-value=2.2e+02 Score=25.19 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.1
Q ss_pred cEEEEeeCCceEEEEEEEeCCC
Q 019310 96 LFYALDLGGTNFRVLRVQLGGR 117 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~ 117 (343)
.+|+||-|-++.=.++++..++
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~ 24 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGR 24 (164)
T ss_pred EEEEEccccCceeEEEEEecCC
Confidence 4799999999999999988754
No 135
>COG4071 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.58 E-value=83 Score=29.55 Aligned_cols=60 Identities=28% Similarity=0.330 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHc-CCCceEEEEEechHHHHhccccc-CCCcEEEEEEccccceeEEcccCcC
Q 019310 207 VVGELTKAMERI-GLDMRVAALVNDTIGTLAGGRYH-NKDAIAAVILGTGTNAAYVERAHAI 266 (343)
Q Consensus 207 v~~lL~~al~r~-~l~v~vvaIvNDTvatlla~~y~-~~~~~iglIlGTGtNa~y~e~~~~I 266 (343)
+..+|.+.++|+ |.+|.++...-|++--.|+..|. -|...=|+|-|||.=+-..-+....
T Consensus 145 vA~el~~Ei~rr~GvDV~v~v~DTDaTY~iLg~yFT~lp~a~pgI~sgtGv~Gfl~GRl~~~ 206 (278)
T COG4071 145 VAEELYKEIKRRLGVDVVVMVADTDATYRILGFYFTALPYAIPGIISGTGVFGFLLGRLADV 206 (278)
T ss_pred HHHHHHHHHHHHhCCceEEEEecCchHHHHHHHHHhhccccCCCeecccchHHHHHHHhhcc
Confidence 777888888665 66654444444444445666553 3555668999999866544444333
No 136
>PF02615 Ldh_2: Malate/L-lactate dehydrogenase; InterPro: IPR003767 The malate dehydrogenase (MDH) of some extremophilies is more similar to the L-lactate dehydrogenases (L-LDH) 1.1.1.27 from EC from various sources than to other MDHs []. This family consists of bacterial and archaeal malate/L-lactate dehydrogenases. The archaebacterial malate dehydrogenase 1.1.1.37 from EC, 1.1.1.82 from EC deviates from the eubacterial and eukaryotic enzymes having a low selectivity for the coenzyme (NAD(H) or NADP(H)) and catalyzing the reduction of oxalacetate to malate more efficiently than the reverse reaction [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1VBI_A 2G8Y_B 2X06_H 1Z2I_B 1X0A_A 1V9N_A 1XRH_G 3I0P_A 2CWH_B 2CWF_B ....
Probab=24.48 E-value=80 Score=31.32 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCcceeeecccccCCCCc
Q 019310 33 RWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGD 92 (343)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lP~G~ 92 (343)
..+++++++.++-....++.++-..+++.+.+-=..|..+|+ +..||.|+..+-.|.
T Consensus 4 ~~~~l~~~~~~il~~~G~~~~~A~~vA~~Lv~Adl~G~~SHG---v~rlp~Y~~~l~~G~ 60 (335)
T PF02615_consen 4 SAEELKAFVTDILQAAGVSEEDAEIVADVLVEADLRGVDSHG---VARLPRYVKRLRSGR 60 (335)
T ss_dssp -HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHTT-GGGT---GGGHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCccCC---HhHHHHHHHHhhcCc
Confidence 345678888888888899999999999999987777776653 789999998766664
No 137
>PRK13260 2,3-diketo-L-gulonate reductase; Provisional
Probab=24.29 E-value=89 Score=30.96 Aligned_cols=57 Identities=18% Similarity=0.287 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCcceeeecccccCCCCc
Q 019310 33 RWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGD 92 (343)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lP~G~ 92 (343)
...++++++.+.-....++.++-+.+++.+++-=..|..+|+ +..+|.|+..+-.|.
T Consensus 4 ~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~adl~G~~SHG---l~rlp~Y~~~l~~G~ 60 (332)
T PRK13260 4 TFEELKAAFKRVLLSRGVDEETADACAEMFARTTESGVYSHG---VNRFPRFIQQLENGD 60 (332)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCcccC---HHHHHHHHHHHHcCC
Confidence 345678888888888899999999999999886666666653 789999998776664
No 138
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=24.26 E-value=2.7e+02 Score=30.17 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=20.7
Q ss_pred cccEEEEeeCCceEEEEEEEeCCC
Q 019310 94 KGLFYALDLGGTNFRVLRVQLGGR 117 (343)
Q Consensus 94 ~G~fLaIDlGGTNlRv~lV~l~g~ 117 (343)
.+.++.+||||.+|=|.++++.+.
T Consensus 211 ~~~vlV~DlGGGT~DvSil~~~~g 234 (657)
T PTZ00186 211 DSLIAVYDLGGGTFDISVLEIAGG 234 (657)
T ss_pred CCEEEEEECCCCeEEEEEEEEeCC
Confidence 357999999999999999999643
No 139
>TIGR03175 AllD ureidoglycolate dehydrogenase. This enzyme converts ureidoglycolate to oxalureate in the non-urea-forming catabolism of allantoin (GenProp0687). The pathway has been characterized in E. coli and is observed in the genomes of Entercoccus faecalis and Bacillus licheniformis.
Probab=24.22 E-value=86 Score=31.32 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCcceeeecccccCCCCc
Q 019310 34 WARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGD 92 (343)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lP~G~ 92 (343)
..++++++.++-.....+.++-..+++.+++-=.+|..+|+ +.+||.|+..+-.|.
T Consensus 5 ~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~Adl~G~~SHG---v~rlp~Y~~~l~~G~ 60 (349)
T TIGR03175 5 RETLHQLIKQKLYKAGLKREHAAIVADVLTFADARGIHSHG---AVRVEYYAERIAKGG 60 (349)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccC---HHHHHHHHHHHHcCC
Confidence 45677788888888889999999999999886666766654 789999998766664
No 140
>PF12464 Mac: Maltose acetyltransferase ; InterPro: IPR024688 Maltose acetyltransferase uses acetyl-CoA as acetyl donor to acetylate cytoplasmic maltose [], while galactoside acetyltransferase act on galactosides. ; GO: 0016407 acetyltransferase activity; PDB: 3V4E_A 4EGG_E 4DCL_A 3FTT_A 1KRR_B 1KRU_A 1KRV_C 1KQA_A 3NZ2_J 3ECT_A ....
Probab=24.02 E-value=5.5 Score=28.29 Aligned_cols=8 Identities=13% Similarity=-0.346 Sum_probs=6.9
Q ss_pred ceeecccc
Q 019310 314 AILMCQFH 321 (343)
Q Consensus 314 fEKmiSG~ 321 (343)
+|||+||.
T Consensus 1 ~eKM~~G~ 8 (55)
T PF12464_consen 1 YEKMISGE 8 (55)
T ss_dssp HHHHHTTS
T ss_pred CcHHHCCC
Confidence 48999998
No 141
>CHL00094 dnaK heat shock protein 70
Probab=23.88 E-value=3.3e+02 Score=29.05 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.0
Q ss_pred cccEEEEeeCCceEEEEEEEeCC
Q 019310 94 KGLFYALDLGGTNFRVLRVQLGG 116 (343)
Q Consensus 94 ~G~fLaIDlGGTNlRv~lV~l~g 116 (343)
...++.+|+||.++-+.++++.+
T Consensus 186 ~~~vlV~DlGgGT~DvSv~~~~~ 208 (621)
T CHL00094 186 NETILVFDLGGGTFDVSILEVGD 208 (621)
T ss_pred CCEEEEEEcCCCeEEEEEEEEcC
Confidence 34689999999999999999854
No 142
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=23.65 E-value=2.1e+02 Score=23.88 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCcce
Q 019310 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLK 79 (343)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~ 79 (343)
.+++.|+++.+.-.++++.-.+|...|-..|.+.|+.+..+.++
T Consensus 15 ~L~~tLDe~v~~g~itp~la~~VL~~FDKSi~~al~~~vk~kms 58 (109)
T KOG3463|consen 15 ALQKTLDELVSDGVITPSLAKKVLEQFDKSINEALNDKVKNKMS 58 (109)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhccccee
Confidence 48899999999999999999999999999999999875544443
No 143
>PRK13331 pantothenate kinase; Reviewed
Probab=23.48 E-value=85 Score=29.88 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=18.6
Q ss_pred ccccEEEEeeCCceEEEEEEE
Q 019310 93 EKGLFYALDLGGTNFRVLRVQ 113 (343)
Q Consensus 93 E~G~fLaIDlGGTNlRv~lV~ 113 (343)
++-..|+||+|-||+++++.+
T Consensus 5 ~~~~~L~iDiGNT~~~~g~f~ 25 (251)
T PRK13331 5 TSNEWLALMIGNSRLHWGYFS 25 (251)
T ss_pred CCCcEEEEEeCCCcEEEEEEE
Confidence 455689999999999999997
No 144
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=23.45 E-value=60 Score=28.29 Aligned_cols=62 Identities=13% Similarity=0.175 Sum_probs=37.7
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCceEEEEEechH-----HHHhccccc-CCCcEEEEEEccccceeEEcc
Q 019310 200 EDTVGEDVVGELTKAMERIGLDMRVAALVNDTI-----GTLAGGRYH-NKDAIAAVILGTGTNAAYVER 262 (343)
Q Consensus 200 ~~~~G~dv~~lL~~al~r~~l~v~vvaIvNDTv-----atlla~~y~-~~~~~iglIlGTGtNa~y~e~ 262 (343)
+|--|.++++.|.+.|+.+|+.|.=..- +|++ +.-++.+-. +...+-=+|+|||.+.++.-+
T Consensus 7 sDh~G~~lK~~i~~~L~~~G~eV~D~G~-~~~~dYpd~a~~va~~V~~~e~~~GIliCGtGiG~siaAN 74 (141)
T TIGR01118 7 SDLAGKRLKDVIKNFLVDNGFEVIDVTE-GDGQDFVDVTLAVASEVQKDEQNLGIVIDAYGAGSFMVAT 74 (141)
T ss_pred eCcchHHHHHHHHHHHHHCCCEEEEcCC-CCCCCcHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhh
Confidence 3445788999999999998876421111 4432 222222222 333444578999999988743
No 145
>PF14142 YrzO: YrzO-like protein
Probab=23.41 E-value=1.5e+02 Score=20.38 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHhhhhhcccchHHHHHHHHHHHH
Q 019310 13 AAAVCAAAALVVRRRMKSTGRWARAVAILKEME 45 (343)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 45 (343)
+.++|-+|++-++.|..- .+...+-++|+++.
T Consensus 11 ~gvacelaainrngrk~i-kqqaeliqllkel~ 42 (46)
T PF14142_consen 11 AGVACELAAINRNGRKKI-KQQAELIQLLKELK 42 (46)
T ss_pred HHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHH
Confidence 456777887777666443 34445556666654
No 146
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=23.03 E-value=2.1e+02 Score=22.46 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=29.7
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhhcCC
Q 019310 38 VAILKEMEEK-CGTPIGKLRQVADAMTVEMHAGLASE 73 (343)
Q Consensus 38 ~~~l~~~~~~-~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (343)
.++++.+.+. ..++..+...+.+.|.++|.+.|...
T Consensus 4 ~eli~~ia~~~~~~s~~~~~~vv~~~~~~i~~~L~~g 40 (94)
T PRK00199 4 SELIERLAARNPHLSAKDVENAVKEILEEMSDALARG 40 (94)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3566777654 46899999999999999999999864
No 147
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=22.90 E-value=2.7e+02 Score=29.74 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=21.5
Q ss_pred ccccEEEEeeCCceEEEEEEEeCCC
Q 019310 93 EKGLFYALDLGGTNFRVLRVQLGGR 117 (343)
Q Consensus 93 E~G~fLaIDlGGTNlRv~lV~l~g~ 117 (343)
+.+.+|.+||||.++-|.++++.+.
T Consensus 191 ~~~~vlV~DlGGGT~DvSi~~~~~~ 215 (595)
T PRK01433 191 QKGCYLVYDLGGGTFDVSILNIQEG 215 (595)
T ss_pred CCCEEEEEECCCCcEEEEEEEEeCC
Confidence 4578999999999999999998543
No 148
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=22.63 E-value=2.9e+02 Score=29.79 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.9
Q ss_pred cccEEEEeeCCceEEEEEEEeCCC
Q 019310 94 KGLFYALDLGGTNFRVLRVQLGGR 117 (343)
Q Consensus 94 ~G~fLaIDlGGTNlRv~lV~l~g~ 117 (343)
...++.+|+||.++-+.++++.+.
T Consensus 193 ~~~vlv~D~GggT~dvsv~~~~~~ 216 (653)
T PTZ00009 193 EKNVLIFDLGGGTFDVSLLTIEDG 216 (653)
T ss_pred CCEEEEEECCCCeEEEEEEEEeCC
Confidence 457999999999999999999653
No 149
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=22.55 E-value=6.8e+02 Score=24.33 Aligned_cols=36 Identities=8% Similarity=0.193 Sum_probs=23.9
Q ss_pred CCceEEEEEechHHHHhcccccCCCcEEEEEEccccceeEE
Q 019310 220 LDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYV 260 (343)
Q Consensus 220 l~v~vvaIvNDTvatlla~~y~~~~~~iglIlGTGtNa~y~ 260 (343)
+.+.-+.++++.++++++... . -|+|+.-|-..+.+
T Consensus 122 ~~~~~v~~~~~~~~a~~~~g~---~--~~lVVDiG~~~t~i 157 (371)
T cd00012 122 FNVPALYVAIQAVLSLYASGR---T--TGLVVDSGDGVTHV 157 (371)
T ss_pred CCCCEEEEechHHHHHHhcCC---C--eEEEEECCCCeeEE
Confidence 455568999999999987644 2 36666555554444
No 150
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=22.52 E-value=1.2e+02 Score=30.37 Aligned_cols=60 Identities=28% Similarity=0.384 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCcceeeecccccCCCCcccc
Q 019310 33 RWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKG 95 (343)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lP~G~E~G 95 (343)
.++++.++..+.-....++.++-+.+++.|..-=..|..+|+ +..+|-|+..+-.|.-.+
T Consensus 7 ~~e~L~~~~~~vl~~~G~~ee~A~~vA~~lv~ad~~G~~SHG---v~r~p~yi~~l~~G~i~~ 66 (349)
T COG2055 7 SAEELKALIEEVLRKAGVPEEDARAVADVLVAADLRGVDSHG---VGRLPGYVRRLKAGKINP 66 (349)
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccc---hHHHHHHHHHHHcCCcCC
Confidence 456778888887778889999999999999988888887754 789999998777765433
No 151
>PRK13411 molecular chaperone DnaK; Provisional
Probab=22.44 E-value=3.5e+02 Score=29.13 Aligned_cols=25 Identities=40% Similarity=0.668 Sum_probs=21.3
Q ss_pred ccccEEEEeeCCceEEEEEEEeCCC
Q 019310 93 EKGLFYALDLGGTNFRVLRVQLGGR 117 (343)
Q Consensus 93 E~G~fLaIDlGGTNlRv~lV~l~g~ 117 (343)
+.+.+|.+|+||.++-|.++++.+.
T Consensus 184 ~~~~vlV~DlGgGT~dvsi~~~~~~ 208 (653)
T PRK13411 184 QEQLILVFDLGGGTFDVSILQLGDG 208 (653)
T ss_pred CCCEEEEEEcCCCeEEEEEEEEeCC
Confidence 3567999999999999999999643
No 152
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=22.39 E-value=3.6e+02 Score=28.52 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=21.1
Q ss_pred ccccEEEEeeCCceEEEEEEEeCCC
Q 019310 93 EKGLFYALDLGGTNFRVLRVQLGGR 117 (343)
Q Consensus 93 E~G~fLaIDlGGTNlRv~lV~l~g~ 117 (343)
+...++.+|+||.++-+.++++.+.
T Consensus 181 ~~~~vlV~D~Gggt~dvsv~~~~~~ 205 (595)
T TIGR02350 181 KDEKILVFDLGGGTFDVSILEIGDG 205 (595)
T ss_pred CCcEEEEEECCCCeEEEEEEEecCC
Confidence 3457999999999999999999643
No 153
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=22.33 E-value=2.3e+02 Score=20.22 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhc
Q 019310 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLA 71 (343)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~ 71 (343)
.+.+.|+++.+.-.++++.-.+|...|-.-|.+.|+
T Consensus 14 aL~dtLDeli~~~~I~p~La~kVL~~FDksi~~~L~ 49 (49)
T PF02268_consen 14 ALTDTLDELIQEGKITPQLAMKVLEQFDKSINEALS 49 (49)
T ss_dssp HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 478899999998889999999999999998888763
No 154
>PRK10098 putative dehydrogenase; Provisional
Probab=22.30 E-value=1e+02 Score=30.77 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCcceeeecccccCCCCc
Q 019310 33 RWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGD 92 (343)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lP~G~ 92 (343)
..++++++++++-....++.++-+.+++.+..-=..|..+|+ +..||.|+..+-.|.
T Consensus 8 ~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~Adl~G~~SHG---v~rlp~Y~~~l~~G~ 64 (350)
T PRK10098 8 DAQTLHSFVQAVWRQAGSEEREAKLVADHLVAANLAGHDSHG---VGMIPSYVRSWSQGH 64 (350)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCcccc---HHHHHHHHHHHHcCC
Confidence 456788888888888899999999999999886666666653 789999998777765
No 155
>PLN03184 chloroplast Hsp70; Provisional
Probab=22.30 E-value=3.5e+02 Score=29.38 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.2
Q ss_pred cccEEEEeeCCceEEEEEEEeCC
Q 019310 94 KGLFYALDLGGTNFRVLRVQLGG 116 (343)
Q Consensus 94 ~G~fLaIDlGGTNlRv~lV~l~g 116 (343)
...++.+|+||.++-+.++++.+
T Consensus 223 ~~~vlV~DlGgGT~DvSi~~~~~ 245 (673)
T PLN03184 223 NETILVFDLGGGTFDVSVLEVGD 245 (673)
T ss_pred CCEEEEEECCCCeEEEEEEEecC
Confidence 45799999999999999999954
No 156
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=21.74 E-value=1.5e+02 Score=30.12 Aligned_cols=84 Identities=21% Similarity=0.406 Sum_probs=43.0
Q ss_pred cccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeeeeeeeeeeccCCceEEeeecccc----ccCCCCCCcHHHH
Q 019310 135 LMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGF----SIEDTVGEDVVGE 210 (343)
Q Consensus 135 ~~~~~~~~lFd~IA~~I~~fl~~~~~~~~~~~~~~l~lGftFSfPv~q~~i~~g~Li~WtKgF----~~~~~~G~dv~~l 210 (343)
++....+++-+|+|+.++.| +..+ |-|+.=-|+++..- .|..+- ..+..+-.++...
T Consensus 148 Lk~d~y~~FA~YLa~Vv~~~-~~~G------------I~f~~IsP~NEP~~------~W~~~~QEG~~~~~~e~a~vI~~ 208 (384)
T PF14587_consen 148 LKPDNYDAFADYLADVVKHY-KKWG------------INFDYISPFNEPQW------NWAGGSQEGCHFTNEEQADVIRA 208 (384)
T ss_dssp S-TT-HHHHHHHHHHHHHHH-HCTT--------------EEEEE--S-TTS-------GG--SS-B----HHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHH-HhcC------------CccceeCCcCCCCC------CCCCCCcCCCCCCHHHHHHHHHH
Confidence 34445678999999988888 5443 44555567765331 253320 0111122468889
Q ss_pred HHHHHHHcCCCceEEEEEechHHHHhc
Q 019310 211 LTKAMERIGLDMRVAALVNDTIGTLAG 237 (343)
Q Consensus 211 L~~al~r~~l~v~vvaIvNDTvatlla 237 (343)
|..+|+++|+..+|.+-.-...-.|..
T Consensus 209 L~~~L~~~GL~t~I~~~Ea~~~~~l~~ 235 (384)
T PF14587_consen 209 LDKALKKRGLSTKISACEAGDWEYLYK 235 (384)
T ss_dssp HHHHHHHHT-S-EEEEEEESSGGGGS-
T ss_pred HHHHHHhcCCCceEEecchhhHHHHhh
Confidence 999999999987765544433333333
No 157
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=21.44 E-value=1e+02 Score=23.92 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=17.1
Q ss_pred CCcHHHHHHHHHHHcCCCc
Q 019310 204 GEDVVGELTKAMERIGLDM 222 (343)
Q Consensus 204 G~dv~~lL~~al~r~~l~v 222 (343)
|..+.+.|.+++++||++.
T Consensus 19 G~ti~d~L~kllekRgl~~ 37 (73)
T cd01817 19 GESIRDLLSGLCEKRGINY 37 (73)
T ss_pred CCCHHHHHHHHHHHcCCCh
Confidence 6889999999999999874
No 158
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=21.24 E-value=98 Score=25.44 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=27.0
Q ss_pred EEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCCchHHH--HHHHHHHHHHHHh
Q 019310 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELF--DYIAAALAKFVAT 157 (343)
Q Consensus 97 fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~~~~lF--d~IA~~I~~fl~~ 157 (343)
+.+||+|+++.++++.+.+..+ ++. .. ---..|..= -....+- +-++..|+.-+++
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~-~~~-vl-~~g~~~s~g--i~~g~Itd~~~i~~~i~~a~~~ 58 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDG-YIR-VL-GVGEVPSKG--IKGGHITDIEDISKAIKIAIEE 58 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEE-EEE-EE-S------------HHHHH--HHHHHHHT--HHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCC-cEE-EE-EEecccccc--cCCCEEEEHHHHHHHHHHHHHH
Confidence 4789999999999998773221 111 00 011122211 1245566 7777777665554
No 159
>PF15324 TALPID3: Hedgehog signalling target
Probab=21.13 E-value=60 Score=36.89 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=10.2
Q ss_pred eeehhhHHHHHHHHHHh
Q 019310 8 ATVVCAAAVCAAAALVV 24 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~~~ 24 (343)
+|++||||.++.|+++.
T Consensus 65 VAAATAAAIATaAPLiK 81 (1252)
T PF15324_consen 65 VAAATAAAIATAAPLIK 81 (1252)
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 44566666666666653
No 160
>PRK15025 ureidoglycolate dehydrogenase; Provisional
Probab=21.01 E-value=1.1e+02 Score=30.51 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCcceeeecccccCCCCc
Q 019310 34 WARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGD 92 (343)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~MlPs~v~~lP~G~ 92 (343)
..++++++.+.-....++.++-+.+++.+.+-=.+|..+|+ +..||.|+..+-.|.
T Consensus 5 ~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~Adl~G~~SHG---v~rlp~Y~~~i~~G~ 60 (349)
T PRK15025 5 RETLHQLIKNKLCKAGLKREHAATVAEVLVYADARGIHSHG---AVRVEYYAERISKGG 60 (349)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccC---HHHHHHHHHHHHcCC
Confidence 45677888887778889999999999999887667776654 789999998766654
No 161
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=20.66 E-value=4.6e+02 Score=22.82 Aligned_cols=16 Identities=19% Similarity=0.354 Sum_probs=10.1
Q ss_pred EEEEechHHHHhcccc
Q 019310 225 AALVNDTIGTLAGGRY 240 (343)
Q Consensus 225 vaIvNDTvatlla~~y 240 (343)
|.++||.+|-+.+..-
T Consensus 101 V~~v~~~~A~lY~~S~ 116 (150)
T PF14639_consen 101 VVIVDDEVARLYSNSK 116 (150)
T ss_dssp EEE---TTHHHHHTSH
T ss_pred EEEECcHHHHHHhcCH
Confidence 6899999999887643
No 162
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=20.46 E-value=1.8e+02 Score=30.54 Aligned_cols=62 Identities=24% Similarity=0.292 Sum_probs=38.8
Q ss_pred cEEEEeeCCceEEEEEEEeCCCcceeEEEeeEEeecCCCcccCC--chHHHHHHHHHHHHHHHh
Q 019310 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGS--SHELFDYIAAALAKFVAT 157 (343)
Q Consensus 96 ~fLaIDlGGTNlRv~lV~l~g~~~~i~~~~~~~~~Ip~~~~~~~--~~~lFd~IA~~I~~fl~~ 157 (343)
.+-+||+|-.++|..+++......+++.......++-+.+.... .++=.+.-.+|++.|.+.
T Consensus 4 ~~A~IDiGSNS~rlvV~~~~~~~~~~l~~~k~~vrLgegl~~~g~L~~eai~R~~~aL~~f~e~ 67 (492)
T COG0248 4 RVAAIDLGSNSFRLVVAEITPGSFQVLFREKRIVRLGEGLDATGNLSEEAIERALSALKRFAEL 67 (492)
T ss_pred eEEEEEecCCeEEEEEEeccCCccchhhhhhhheehhcCccccCCcCHHHHHHHHHHHHHHHHH
Confidence 46799999999999999986322223322223444555543221 456667777777777654
No 163
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=20.09 E-value=2.6e+02 Score=21.82 Aligned_cols=36 Identities=14% Similarity=0.261 Sum_probs=29.6
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhcCC
Q 019310 38 VAILKEMEEKC-GTPIGKLRQVADAMTVEMHAGLASE 73 (343)
Q Consensus 38 ~~~l~~~~~~~-~~~~~~L~~i~~~f~~em~~gL~~~ 73 (343)
.++++.+.+.. .++..+...+.+.|.++|.+.|...
T Consensus 4 ~eli~~i~~~~~~~s~~~v~~vv~~~~~~i~~~L~~g 40 (94)
T TIGR00988 4 SELIERIATQQSHLPAKDVEDAVKTMLEHMASALAQG 40 (94)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 45677776643 5899999999999999999999764
Done!