BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019311
         (343 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
           Inducible P47 Resistance Gtpases
 pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
           Inducible P47 Resistance Gtpases
 pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
           Inducible P47 Resistance Gtpases
 pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
           Inducible P47 Resistance Gtpases
          Length = 422

 Score = 28.5 bits (62), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 60  EPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLM 94
           + VI++   F+  +     FAA + NI+P++TFL+
Sbjct: 268 DSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLL 302


>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
           Inducible P47 Resistance Gtpases
          Length = 413

 Score = 28.5 bits (62), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 60  EPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLM 94
           + VI++   F+  +     FAA + NI+P++TFL+
Sbjct: 268 DSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLL 302


>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
           Inducible P47 Resistance Gtpases
 pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
           Inducible P47 Resistance Gtpases
          Length = 413

 Score = 28.5 bits (62), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 60  EPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLM 94
           + VI++   F+  +     FAA + NI+P++TFL+
Sbjct: 268 DSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLL 302


>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
           Inducible P47 Resistance Gtpases
          Length = 413

 Score = 28.5 bits (62), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 60  EPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLM 94
           + VI++   F+  +     FAA + NI+P++TFL+
Sbjct: 268 DSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLL 302


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,875,151
Number of Sequences: 62578
Number of extensions: 311493
Number of successful extensions: 577
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 573
Number of HSP's gapped (non-prelim): 5
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)