Query 019311
Match_columns 343
No_of_seqs 188 out of 1949
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:25:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 3.8E-37 8.2E-42 279.6 30.3 301 1-309 28-337 (358)
2 PRK11272 putative DMT superfam 100.0 9.4E-31 2E-35 234.1 27.4 264 2-303 24-288 (292)
3 TIGR00950 2A78 Carboxylate/Ami 100.0 2.4E-30 5.2E-35 228.1 27.6 256 1-296 4-260 (260)
4 TIGR00817 tpt Tpt phosphate/ph 100.0 1.1E-30 2.4E-35 235.0 24.6 270 2-303 18-296 (302)
5 PRK11453 O-acetylserine/cystei 100.0 6.9E-30 1.5E-34 229.3 27.1 266 2-303 20-290 (299)
6 PRK10532 threonine and homoser 100.0 5.7E-29 1.2E-33 222.6 26.9 261 2-307 28-288 (293)
7 PRK11689 aromatic amino acid e 100.0 4.1E-29 8.9E-34 223.7 24.4 266 2-302 20-289 (295)
8 PRK15430 putative chlorampheni 100.0 7.1E-28 1.5E-32 215.8 22.4 259 2-301 24-286 (296)
9 PTZ00343 triose or hexose phos 100.0 7.3E-27 1.6E-31 213.3 25.6 267 2-301 65-349 (350)
10 PF06027 DUF914: Eukaryotic pr 100.0 2.7E-26 5.9E-31 204.4 27.9 280 5-308 32-313 (334)
11 TIGR03340 phn_DUF6 phosphonate 100.0 1.3E-26 2.8E-31 206.3 24.4 260 2-297 17-280 (281)
12 TIGR00688 rarD rarD protein. T 99.9 3.7E-23 8.1E-28 181.7 21.5 232 2-275 18-255 (256)
13 COG0697 RhaT Permeases of the 99.9 7.1E-22 1.5E-26 176.7 27.1 262 4-301 25-288 (292)
14 COG5006 rhtA Threonine/homoser 99.9 7.4E-22 1.6E-26 163.1 21.9 257 4-304 30-286 (292)
15 KOG4510 Permease of the drug/m 99.9 8.1E-25 1.8E-29 181.7 1.7 276 1-303 53-328 (346)
16 PF08449 UAA: UAA transporter 99.9 1.9E-20 4E-25 168.4 26.0 268 14-305 31-302 (303)
17 COG2962 RarD Predicted permeas 99.9 1.4E-19 3.1E-24 153.8 22.7 259 4-303 25-286 (293)
18 TIGR00776 RhaT RhaT L-rhamnose 99.8 1.1E-18 2.3E-23 155.6 23.9 257 3-300 18-288 (290)
19 KOG2765 Predicted membrane pro 99.8 1.2E-19 2.7E-24 158.1 16.7 229 54-304 163-394 (416)
20 KOG1441 Glucose-6-phosphate/ph 99.8 1.6E-19 3.6E-24 158.9 12.6 274 2-307 33-314 (316)
21 KOG1580 UDP-galactose transpor 99.8 1.8E-17 3.8E-22 135.7 18.3 264 15-305 53-318 (337)
22 KOG1443 Predicted integral mem 99.7 2E-15 4.3E-20 128.6 19.8 257 11-298 40-313 (349)
23 KOG1581 UDP-galactose transpor 99.7 1.5E-15 3.4E-20 129.4 19.2 265 14-304 50-317 (327)
24 PF04142 Nuc_sug_transp: Nucle 99.7 7E-15 1.5E-19 127.0 20.3 230 46-291 13-244 (244)
25 KOG2766 Predicted membrane pro 99.7 1.9E-16 4E-21 131.3 7.9 260 10-303 42-302 (336)
26 KOG2234 Predicted UDP-galactos 99.6 5.3E-13 1.1E-17 117.2 26.4 272 13-305 45-327 (345)
27 KOG1444 Nucleotide-sugar trans 99.6 5.6E-13 1.2E-17 115.3 21.8 277 1-309 27-309 (314)
28 COG2510 Predicted membrane pro 99.6 5.3E-14 1.2E-18 104.6 13.3 136 161-300 4-139 (140)
29 COG2510 Predicted membrane pro 99.5 1.2E-13 2.5E-18 102.8 7.6 118 3-128 20-138 (140)
30 PF00892 EamA: EamA-like trans 99.5 1.6E-13 3.5E-18 106.7 8.7 125 170-299 1-125 (126)
31 PF00892 EamA: EamA-like trans 99.5 2.6E-13 5.6E-18 105.5 9.7 119 2-128 7-125 (126)
32 COG5070 VRG4 Nucleotide-sugar 99.4 1E-12 2.2E-17 107.2 9.9 279 3-309 23-305 (309)
33 KOG3912 Predicted integral mem 99.4 1.9E-11 4.2E-16 103.2 15.7 264 15-299 39-333 (372)
34 KOG1583 UDP-N-acetylglucosamin 99.4 4.2E-12 9.1E-17 106.9 11.5 240 42-300 59-314 (330)
35 PF06800 Sugar_transport: Suga 99.4 4.6E-10 1E-14 96.8 22.3 251 14-297 11-268 (269)
36 PF13536 EmrE: Multidrug resis 99.3 6.4E-12 1.4E-16 95.9 7.9 105 20-131 2-108 (113)
37 KOG1442 GDP-fucose transporter 99.3 8E-12 1.7E-16 105.1 7.7 277 4-309 46-336 (347)
38 KOG1582 UDP-galactose transpor 99.3 5.1E-11 1.1E-15 100.1 10.7 229 44-303 103-335 (367)
39 KOG4314 Predicted carbohydrate 99.2 9.5E-11 2.1E-15 94.0 11.4 211 62-302 64-278 (290)
40 PF03151 TPT: Triose-phosphate 99.2 1.6E-10 3.4E-15 93.3 12.8 139 161-300 1-153 (153)
41 PRK15430 putative chlorampheni 99.2 1.6E-10 3.4E-15 103.8 13.6 139 157-300 5-145 (296)
42 TIGR00688 rarD rarD protein. T 99.2 2.9E-10 6.3E-15 99.9 12.9 138 160-300 2-142 (256)
43 TIGR03340 phn_DUF6 phosphonate 99.1 1.2E-09 2.6E-14 97.3 14.2 133 162-300 3-135 (281)
44 PRK02971 4-amino-4-deoxy-L-ara 99.0 8.4E-09 1.8E-13 79.8 12.4 122 160-303 2-125 (129)
45 PLN00411 nodulin MtN21 family 99.0 7.9E-09 1.7E-13 94.6 14.1 141 158-301 11-157 (358)
46 TIGR00803 nst UDP-galactose tr 99.0 1.6E-09 3.4E-14 93.1 8.5 213 77-298 4-222 (222)
47 TIGR00950 2A78 Carboxylate/Ami 99.0 9.1E-09 2E-13 90.5 12.3 114 3-125 145-260 (260)
48 PF05653 Mg_trans_NIPA: Magnes 98.9 3.2E-08 7E-13 88.2 14.8 224 52-302 51-294 (300)
49 PRK11272 putative DMT superfam 98.9 4.3E-08 9.2E-13 87.8 14.3 132 162-301 10-142 (292)
50 PF13536 EmrE: Multidrug resis 98.9 1E-08 2.3E-13 78.1 8.7 107 195-303 3-109 (113)
51 PRK11689 aromatic amino acid e 98.9 5.4E-08 1.2E-12 87.3 14.0 130 160-300 4-137 (295)
52 PRK11453 O-acetylserine/cystei 98.9 5.5E-08 1.2E-12 87.4 13.8 125 163-300 7-132 (299)
53 PRK10532 threonine and homoser 98.8 1.4E-07 3E-12 84.6 12.6 120 2-131 164-283 (293)
54 PRK13499 rhamnose-proton sympo 98.7 4.9E-06 1.1E-10 74.9 22.0 243 45-302 68-343 (345)
55 PTZ00343 triose or hexose phos 98.7 3.4E-07 7.3E-12 84.0 15.0 136 162-300 51-186 (350)
56 TIGR00817 tpt Tpt phosphate/ph 98.7 2.8E-07 6.1E-12 83.0 12.8 122 173-299 15-136 (302)
57 COG2962 RarD Predicted permeas 98.7 4.2E-07 9E-12 78.2 12.0 141 157-301 4-145 (293)
58 PRK15051 4-amino-4-deoxy-L-ara 98.6 3.6E-07 7.9E-12 69.0 9.0 68 232-299 41-108 (111)
59 PRK15051 4-amino-4-deoxy-L-ara 98.6 4.6E-07 1E-11 68.4 9.1 70 53-128 39-108 (111)
60 COG0697 RhaT Permeases of the 98.5 4.6E-06 9.9E-11 74.3 14.2 142 158-304 5-147 (292)
61 KOG2922 Uncharacterized conser 98.4 8.3E-07 1.8E-11 77.3 7.7 229 52-304 65-310 (335)
62 PF06027 DUF914: Eukaryotic pr 98.4 8.9E-06 1.9E-10 73.3 14.2 145 157-304 10-155 (334)
63 PF03151 TPT: Triose-phosphate 98.3 8.9E-06 1.9E-10 65.4 11.7 108 12-126 32-150 (153)
64 TIGR00776 RhaT RhaT L-rhamnose 98.3 9.9E-06 2.1E-10 72.4 11.9 131 161-301 2-137 (290)
65 KOG4510 Permease of the drug/m 98.3 4.1E-07 8.8E-12 76.9 2.3 137 157-302 35-171 (346)
66 PRK10452 multidrug efflux syst 98.2 1E-05 2.3E-10 61.5 7.8 69 234-302 36-105 (120)
67 COG4975 GlcU Putative glucose 98.1 5.7E-07 1.2E-11 75.2 0.6 251 14-300 27-285 (288)
68 PF08449 UAA: UAA transporter 98.1 4.6E-05 1E-09 68.6 13.1 131 171-308 11-144 (303)
69 PRK02971 4-amino-4-deoxy-L-ara 98.1 1.9E-05 4.1E-10 61.2 8.2 71 53-129 50-122 (129)
70 PRK09541 emrE multidrug efflux 98.0 2.7E-05 5.8E-10 58.4 6.8 68 235-302 37-105 (110)
71 PF04657 DUF606: Protein of un 98.0 0.00016 3.5E-09 56.8 11.2 132 161-297 2-138 (138)
72 PF05653 Mg_trans_NIPA: Magnes 97.9 5E-05 1.1E-09 67.9 8.9 122 157-303 4-125 (300)
73 PRK10650 multidrug efflux syst 97.8 0.00046 9.9E-09 51.6 11.0 65 58-128 42-107 (109)
74 COG5006 rhtA Threonine/homoser 97.8 0.00025 5.4E-09 60.0 9.7 117 4-129 166-282 (292)
75 COG2076 EmrE Membrane transpor 97.7 0.00055 1.2E-08 50.3 9.7 67 57-129 36-103 (106)
76 PRK10452 multidrug efflux syst 97.7 0.00022 4.7E-09 54.3 7.6 68 56-129 35-103 (120)
77 PRK11431 multidrug efflux syst 97.7 0.00016 3.5E-09 53.7 6.4 66 235-300 36-102 (105)
78 PRK11431 multidrug efflux syst 97.6 0.00032 6.9E-09 52.1 7.8 65 58-128 36-101 (105)
79 PRK09541 emrE multidrug efflux 97.6 0.0011 2.3E-08 49.8 10.6 67 57-129 36-103 (110)
80 PF04142 Nuc_sug_transp: Nucle 97.6 0.00021 4.6E-09 62.0 7.8 79 226-305 16-94 (244)
81 COG3238 Uncharacterized protei 97.6 0.0011 2.4E-08 52.1 10.9 139 158-300 3-146 (150)
82 COG2076 EmrE Membrane transpor 97.6 0.00023 5E-09 52.3 6.5 65 237-301 39-104 (106)
83 PRK10650 multidrug efflux syst 97.6 0.001 2.2E-08 49.8 9.7 65 235-299 42-107 (109)
84 PF06800 Sugar_transport: Suga 97.5 0.0022 4.8E-08 55.8 12.0 81 226-307 44-129 (269)
85 PRK13499 rhamnose-proton sympo 97.5 0.00091 2E-08 60.5 9.8 140 157-302 4-155 (345)
86 PF00893 Multi_Drug_Res: Small 97.4 0.0012 2.6E-08 48.2 8.0 57 235-291 36-93 (93)
87 PF07857 DUF1632: CEO family ( 97.3 0.00044 9.6E-09 59.7 5.6 133 161-306 1-140 (254)
88 PF10639 UPF0546: Uncharacteri 97.3 0.0026 5.6E-08 47.6 8.5 109 167-298 3-112 (113)
89 PF06379 RhaT: L-rhamnose-prot 97.2 0.096 2.1E-06 46.9 19.5 243 45-301 68-341 (344)
90 PF00893 Multi_Drug_Res: Small 97.1 0.0063 1.4E-07 44.3 9.2 57 57-119 35-92 (93)
91 PF04657 DUF606: Protein of un 97.1 0.0061 1.3E-07 47.9 9.3 105 14-126 29-138 (138)
92 KOG2234 Predicted UDP-galactos 97.0 0.056 1.2E-06 48.5 15.3 141 160-301 15-165 (345)
93 KOG1441 Glucose-6-phosphate/ph 96.7 0.0012 2.7E-08 58.9 2.9 108 175-286 32-141 (316)
94 KOG2922 Uncharacterized conser 96.5 0.0015 3.3E-08 57.3 2.3 129 155-308 16-144 (335)
95 COG4975 GlcU Putative glucose 96.5 0.0013 2.9E-08 55.4 1.8 132 161-303 3-139 (288)
96 KOG2765 Predicted membrane pro 96.3 0.0087 1.9E-07 53.7 5.6 74 231-305 163-236 (416)
97 PF10639 UPF0546: Uncharacteri 96.3 0.011 2.4E-07 44.3 5.3 61 61-127 51-112 (113)
98 PF07857 DUF1632: CEO family ( 95.7 0.58 1.3E-05 40.7 14.2 174 2-186 16-209 (254)
99 KOG1444 Nucleotide-sugar trans 95.7 0.23 5E-06 44.0 11.7 134 162-300 14-149 (314)
100 PF06379 RhaT: L-rhamnose-prot 95.4 0.053 1.2E-06 48.5 6.8 142 157-303 4-156 (344)
101 COG3238 Uncharacterized protei 94.6 0.4 8.8E-06 37.9 9.0 111 14-128 33-145 (150)
102 KOG1581 UDP-galactose transpor 94.6 0.66 1.4E-05 40.9 11.1 130 169-305 23-160 (327)
103 KOG1443 Predicted integral mem 94.4 0.32 7E-06 42.8 8.8 124 179-303 35-159 (349)
104 KOG1580 UDP-galactose transpor 94.0 0.15 3.4E-06 43.0 5.9 74 48-128 239-312 (337)
105 TIGR00803 nst UDP-galactose tr 93.7 0.059 1.3E-06 46.1 3.2 59 62-126 163-221 (222)
106 KOG4314 Predicted carbohydrate 93.7 0.035 7.5E-07 45.4 1.5 63 240-302 65-127 (290)
107 COG5070 VRG4 Nucleotide-sugar 93.6 0.61 1.3E-05 39.2 8.5 111 12-129 182-296 (309)
108 PRK02237 hypothetical protein; 91.9 2.3 4.9E-05 31.4 8.6 54 70-129 50-105 (109)
109 KOG2766 Predicted membrane pro 91.4 0.039 8.4E-07 47.1 -1.0 138 157-303 15-153 (336)
110 PF02694 UPF0060: Uncharacteri 90.6 2.2 4.7E-05 31.4 7.5 54 70-129 49-103 (107)
111 PRK02237 hypothetical protein; 90.3 1.2 2.6E-05 32.8 6.0 46 257-302 62-107 (109)
112 KOG3912 Predicted integral mem 90.3 0.3 6.4E-06 42.5 3.3 65 237-301 95-159 (372)
113 PF07168 Ureide_permease: Urei 88.7 0.35 7.6E-06 42.5 2.6 132 166-300 2-146 (336)
114 PF02694 UPF0060: Uncharacteri 88.1 1.7 3.7E-05 32.0 5.4 47 257-303 60-106 (107)
115 PF05297 Herpes_LMP1: Herpesvi 82.5 0.4 8.8E-06 41.5 0.0 49 72-126 44-94 (381)
116 KOG1442 GDP-fucose transporter 82.1 2.5 5.5E-05 36.8 4.6 111 187-299 59-173 (347)
117 KOG4831 Unnamed protein [Funct 82.0 3.1 6.7E-05 30.5 4.3 61 62-128 63-124 (125)
118 PF04342 DUF486: Protein of un 81.9 17 0.00038 26.7 8.1 51 71-127 55-106 (108)
119 COG1742 Uncharacterized conser 80.6 20 0.00044 26.3 9.3 54 70-129 49-104 (109)
120 KOG4831 Unnamed protein [Funct 80.4 5.9 0.00013 29.1 5.3 62 238-299 62-124 (125)
121 COG1742 Uncharacterized conser 79.9 5.1 0.00011 29.3 4.8 46 257-302 61-106 (109)
122 KOG1582 UDP-galactose transpor 78.3 8 0.00017 33.8 6.3 113 12-131 217-334 (367)
123 PF04342 DUF486: Protein of un 76.1 3.3 7.1E-05 30.4 3.0 30 269-298 77-106 (108)
124 PRK06638 NADH:ubiquinone oxido 75.4 47 0.001 27.8 13.1 32 269-300 133-166 (198)
125 COG3169 Uncharacterized protei 73.4 9 0.0002 27.7 4.6 32 269-300 84-115 (116)
126 PF08507 COPI_assoc: COPI asso 62.4 18 0.00039 28.2 4.9 17 283-299 88-104 (136)
127 PF05961 Chordopox_A13L: Chord 61.9 8 0.00017 25.8 2.2 20 284-303 6-25 (68)
128 PF05297 Herpes_LMP1: Herpesvi 61.6 2.5 5.3E-05 36.9 -0.2 25 238-262 118-142 (381)
129 COG3169 Uncharacterized protei 57.2 73 0.0016 23.2 10.0 47 76-128 67-114 (116)
130 KOG1583 UDP-N-acetylglucosamin 57.1 17 0.00037 31.9 4.1 69 240-308 76-145 (330)
131 PRK13108 prolipoprotein diacyl 51.1 99 0.0021 29.7 8.5 23 280-302 254-276 (460)
132 TIGR02865 spore_II_E stage II 51.0 3E+02 0.0065 28.4 16.5 46 77-128 10-55 (764)
133 PF03605 DcuA_DcuB: Anaerobic 47.2 1.5E+02 0.0033 27.3 8.7 15 91-105 3-17 (364)
134 PHA03049 IMV membrane protein; 46.1 18 0.00039 24.0 2.0 20 284-303 6-25 (68)
135 TIGR00910 2A0307_GadC glutamat 44.4 3.1E+02 0.0067 26.7 12.5 16 188-203 330-345 (507)
136 PF11044 TMEMspv1-c74-12: Plec 44.0 8.1 0.00018 23.3 0.1 17 280-296 2-18 (49)
137 COG3086 RseC Positive regulato 40.7 27 0.00059 27.4 2.6 26 250-275 70-95 (150)
138 PF06946 Phage_holin_5: Phage 39.0 1.5E+02 0.0032 21.4 6.2 59 246-304 22-84 (93)
139 PF03595 SLAC1: Voltage-depend 38.7 2.9E+02 0.0064 24.8 10.4 42 114-174 7-48 (330)
140 PF07444 Ycf66_N: Ycf66 protei 38.5 24 0.00052 24.9 1.8 28 279-306 4-31 (84)
141 PF07214 DUF1418: Protein of u 37.3 59 0.0013 23.6 3.6 17 285-301 50-66 (96)
142 PF15102 TMEM154: TMEM154 prot 36.0 56 0.0012 25.7 3.6 19 286-304 67-85 (146)
143 PF15345 TMEM51: Transmembrane 35.3 1.1E+02 0.0025 26.0 5.6 21 114-134 11-31 (233)
144 PF10225 DUF2215: Uncharacteri 34.8 2.1E+02 0.0045 24.9 7.5 21 157-177 37-57 (249)
145 PF06570 DUF1129: Protein of u 34.1 2.8E+02 0.0061 23.2 8.7 28 50-78 146-173 (206)
146 PF14851 FAM176: FAM176 family 32.8 81 0.0018 25.1 4.2 11 279-289 21-31 (153)
147 COG0387 ChaA Ca2+/H+ antiporte 31.7 4.2E+02 0.0092 24.5 14.4 23 278-300 161-183 (368)
148 PF15471 TMEM171: Transmembran 31.6 61 0.0013 28.3 3.5 25 282-306 161-185 (319)
149 PRK12405 electron transport co 30.9 3.5E+02 0.0075 23.3 10.3 23 187-209 64-86 (231)
150 PRK15432 autoinducer 2 ABC tra 30.5 2E+02 0.0043 26.4 6.9 23 281-303 287-309 (344)
151 PRK10746 putative transport pr 30.4 4.9E+02 0.011 24.8 10.0 28 157-184 430-457 (461)
152 TIGR00836 amt ammonium transpo 30.0 4.8E+02 0.01 24.6 13.9 66 228-293 280-363 (403)
153 COG0670 Integral membrane prot 30.0 3.6E+02 0.0078 23.2 17.1 114 44-185 82-196 (233)
154 PF11361 DUF3159: Protein of u 29.6 2.1E+02 0.0046 23.7 6.3 71 79-177 28-98 (187)
155 PF01102 Glycophorin_A: Glycop 29.6 37 0.0008 25.9 1.7 16 285-300 74-89 (122)
156 PF04277 OAD_gamma: Oxaloaceta 29.4 93 0.002 21.4 3.7 10 285-294 9-18 (79)
157 TIGR01167 LPXTG_anchor LPXTG-m 29.2 69 0.0015 17.8 2.5 17 280-296 10-26 (34)
158 PF04246 RseC_MucC: Positive r 29.0 43 0.00094 25.9 2.1 21 255-275 68-88 (135)
159 KOG1289 Amino acid transporter 28.1 2E+02 0.0044 28.1 6.6 28 277-304 485-512 (550)
160 PF06609 TRI12: Fungal trichot 27.7 6.3E+02 0.014 25.3 11.9 19 111-129 238-256 (599)
161 PRK11902 ampG muropeptide tran 27.5 4.9E+02 0.011 23.9 13.7 16 284-299 372-387 (402)
162 PF08693 SKG6: Transmembrane a 27.4 50 0.0011 19.7 1.6 17 286-302 21-37 (40)
163 PF10754 DUF2569: Protein of u 27.3 3.1E+02 0.0067 21.6 7.5 29 156-184 117-145 (149)
164 PF15048 OSTbeta: Organic solu 27.3 74 0.0016 24.3 2.9 28 273-300 25-56 (125)
165 COG4858 Uncharacterized membra 26.4 3.8E+02 0.0082 22.2 10.1 69 97-181 147-215 (226)
166 PF05977 MFS_3: Transmembrane 26.2 6.3E+02 0.014 24.7 22.7 17 259-275 351-367 (524)
167 PF06570 DUF1129: Protein of u 25.2 4.1E+02 0.0088 22.2 10.2 15 114-128 89-103 (206)
168 MTH00057 ND6 NADH dehydrogenas 25.1 3.9E+02 0.0085 22.0 11.3 32 269-300 132-165 (186)
169 PF06123 CreD: Inner membrane 25.0 6.1E+02 0.013 24.2 13.5 62 97-187 317-378 (430)
170 PF05915 DUF872: Eukaryotic pr 24.6 1.7E+02 0.0037 22.1 4.5 15 114-128 52-66 (115)
171 TIGR00770 Dcu anaerobic c4-dic 24.5 6.2E+02 0.013 24.1 10.6 13 92-104 4-16 (430)
172 COG3086 RseC Positive regulato 24.3 1.8E+02 0.0039 23.0 4.6 44 75-125 72-115 (150)
173 PF09656 PGPGW: Putative trans 24.2 2E+02 0.0044 18.3 5.0 44 114-185 6-49 (53)
174 PF11295 DUF3096: Protein of u 24.1 98 0.0021 18.3 2.4 34 265-298 1-34 (39)
175 PF15345 TMEM51: Transmembrane 24.0 57 0.0012 27.8 2.0 23 285-307 66-88 (233)
176 PF06781 UPF0233: Uncharacteri 23.8 1.8E+02 0.0039 20.8 4.2 57 225-301 30-86 (87)
177 PRK10263 DNA translocase FtsK; 23.7 9.1E+02 0.02 26.8 10.9 15 114-128 25-39 (1355)
178 KOG1330 Sugar transporter/spin 23.5 6.3E+02 0.014 24.5 8.8 40 157-196 285-324 (493)
179 COG5336 Uncharacterized protei 23.1 2.2E+02 0.0047 21.3 4.6 38 264-301 55-94 (116)
180 PF00689 Cation_ATPase_C: Cati 20.7 4.4E+02 0.0096 21.0 10.3 61 12-74 3-75 (182)
181 PF06609 TRI12: Fungal trichot 20.6 8.7E+02 0.019 24.3 20.3 17 195-211 449-465 (599)
182 PF02487 CLN3: CLN3 protein; 20.4 7.3E+02 0.016 23.4 11.1 39 85-129 68-108 (402)
183 TIGR02840 spore_YtaF putative 20.4 81 0.0018 26.5 2.3 45 255-299 34-80 (206)
184 KOG4320 Uncharacterized conser 20.4 5.7E+02 0.012 22.2 8.5 48 156-203 117-164 (253)
185 PRK15462 dipeptide/tripeptide 20.4 8E+02 0.017 23.8 11.0 49 80-128 310-361 (493)
186 PRK10655 potE putrescine trans 20.3 7.2E+02 0.016 23.3 9.9 17 158-174 410-426 (438)
187 COG3476 Tryptophan-rich sensor 20.3 4.7E+02 0.01 21.1 7.5 61 239-299 62-123 (161)
188 PRK11715 inner membrane protei 20.2 7.6E+02 0.017 23.6 13.3 30 157-186 354-383 (436)
189 CHL00196 psbY photosystem II p 20.1 1.9E+02 0.0042 16.8 3.0 21 158-178 4-24 (36)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=3.8e-37 Score=279.65 Aligned_cols=301 Identities=30% Similarity=0.545 Sum_probs=233.4
Q ss_pred CcchhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 019311 1 MDVLCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDK-KIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATF 79 (343)
Q Consensus 1 ~~~~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~ 79 (343)
|+++.|.+++.+++|..++++|+.++.++++++.+.++| +++++.+++++..+.+.|+++ .+.+.+++.|++|+++++
T Consensus 28 ~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g-~~~~~~~~~gl~~tsa~~ 106 (358)
T PLN00411 28 ISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG-SMYVITGYIGIEYSNPTL 106 (358)
T ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH-HHHHHHHHHHHhhccHHH
Confidence 467899999999999999999999999999999877544 233444678889999999999 788889999999999999
Q ss_pred HHHHhchhHHHHHHHHHHHh------hccccccccccchhhHHHHHHHhhhhhheeecCcccccc--cccCCCCCCCCCC
Q 019311 80 AAAMYNILPAITFLMAWIIR------LENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELF--WTKGAENHGHGSS 151 (343)
Q Consensus 80 ~~~i~~~~p~~~~lla~~~~------~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~--~~~~~~~~~~~~~ 151 (343)
++++.++.|+++.+++++++ |||++++ |++|++++++|+.++...+++..... ++.-+........
T Consensus 107 asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~ 180 (358)
T PLN00411 107 ASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPL 180 (358)
T ss_pred HHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCccccccccccccccccccccc
Confidence 99999999999999999994 6666666 59999999999998875444211000 0000000000000
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHH
Q 019311 152 GTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASV 231 (343)
Q Consensus 152 ~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (343)
.....+...|++++++++++||+|.+.+|+..++++++...++++..++.+...+..+..+..+...|..........++
T Consensus 181 ~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 260 (358)
T PLN00411 181 SSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIV 260 (358)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHH
Confidence 11223446799999999999999999999999988766677777777777776666665553122333222222445677
Q ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCccCCCCC
Q 019311 232 YSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKSP 309 (343)
Q Consensus 232 ~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~~~~~~ 309 (343)
+.+++ +.++|.+|++++++.+|+++++..+++|+++++++++++||++++.+++|+++|++|+++..+.++||.+.+
T Consensus 261 y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~ 337 (358)
T PLN00411 261 TMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQ 337 (358)
T ss_pred HHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 87775 678999999999999999999999999999999999999999999999999999999999988766654433
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=9.4e-31 Score=234.06 Aligned_cols=264 Identities=16% Similarity=0.180 Sum_probs=217.9
Q ss_pred cchhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh-cccchhHH
Q 019311 2 DVLCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGM-KYTTATFA 80 (343)
Q Consensus 2 ~~~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al-~~~~~~~~ 80 (343)
++.+|..+ ++++|.+++++|+.++.++++++...+++ + ..+++++......|.++...++.+++.+. ++++++++
T Consensus 24 ~~~~K~~~-~~~~p~~~~~~R~~~a~l~ll~~~~~~~~--~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a 99 (292)
T PRK11272 24 YLVIRIGV-ESWPPLMMAGVRFLIAGILLLAFLLLRGH--P-LPTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIA 99 (292)
T ss_pred HHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHhCC--C-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH
Confidence 46789884 57999999999999999999888654322 2 22467788888899887678888999999 99999999
Q ss_pred HHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhH
Q 019311 81 AAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIK 160 (343)
Q Consensus 81 ~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (343)
+++.++.|+++.+++++ +|||+++++ +++++++++|+.++... + +.+....
T Consensus 100 ~~l~~~~Pl~~~lla~~-~~e~~~~~~------~~~~~la~~Gv~ll~~~-~---------------------~~~~~~~ 150 (292)
T PRK11272 100 AVVVATVPLFTLCFSRL-FGIRTRKLE------WLGIAIGLAGIVLLNSG-G---------------------NLSGNPW 150 (292)
T ss_pred HHHHHHHHHHHHHHHHH-hcccCchhH------HHHHHHHHHhHHHHhcC-c---------------------ccccchH
Confidence 99999999999999985 699999997 99999999999988621 1 1123357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHH
Q 019311 161 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 240 (343)
Q Consensus 161 G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (343)
|++++++++++||.|.+..|+..++ ++.....+++..+.+.+.+.....+. ... ...+...|..+++.+++++.+
T Consensus 151 G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~i~~l~i~~s~~ 225 (292)
T PRK11272 151 GAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGE-RLT--ALPTLSGFLALGYLAVFGSII 225 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCC-ccc--ccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986543 23556677888887777776654332 111 112345788999999999999
Q ss_pred HHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCc
Q 019311 241 TYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 241 ~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~ 303 (343)
++.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++++.|+++..+.++
T Consensus 226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999876544
No 3
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=100.00 E-value=2.4e-30 Score=228.11 Aligned_cols=256 Identities=21% Similarity=0.274 Sum_probs=216.1
Q ss_pred CcchhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 019311 1 MDVLCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFA 80 (343)
Q Consensus 1 ~~~~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~ 80 (343)
+++.+|..++++.++.+..+.|+..+.+++.++... + .+++++.+++..|.++..+++.+++.|+++++++++
T Consensus 4 ~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~ 76 (260)
T TIGR00950 4 TGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEA 76 (260)
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 367889987777899999999999998888776543 2 235677788888888879999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhH
Q 019311 81 AAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIK 160 (343)
Q Consensus 81 ~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (343)
+++.++.|+++.+++++++|||+++++ ++|+.++++|+.++.. ++ +.+....
T Consensus 77 ~ii~~~~P~~~~~~~~l~~~e~~~~~~------~~gi~i~~~Gv~li~~-~~---------------------~~~~~~~ 128 (260)
T TIGR00950 77 ALLLYLAPLYVTLLSDLMGKERPRKLV------LLAAVLGLAGAVLLLS-DG---------------------NLSINPA 128 (260)
T ss_pred HHHHhhhHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHhhcc-CC---------------------cccccHH
Confidence 999999999999999999999999997 9999999999999862 11 1124468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHH
Q 019311 161 GALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG 239 (343)
Q Consensus 161 G~~~~l~a~~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (343)
|+.++++++++|+.+.+..|+..++.+ ++.....+++..+.+++.+.....+. . ... +...+..+++.+++++.
T Consensus 129 G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~---~~~~~~~~~~~~~~~~~ 203 (260)
T TIGR00950 129 GLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGP-N-PQA---LSLQWGALLYLGLIGTA 203 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCC-C-CCc---chHHHHHHHHHHHHHHH
Confidence 999999999999999999999887654 23455556788888888777765432 1 111 34467778999999899
Q ss_pred HHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhh
Q 019311 240 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLY 296 (343)
Q Consensus 240 ~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~ 296 (343)
+++.+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|+++++.|++
T Consensus 204 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 204 LAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999863
No 4
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.98 E-value=1.1e-30 Score=234.97 Aligned_cols=270 Identities=14% Similarity=0.135 Sum_probs=213.4
Q ss_pred cchhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 019311 2 DVLCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAA 81 (343)
Q Consensus 2 ~~~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ 81 (343)
.+.+|.++++..+|..++++|+.++.+.+.+. +..+.+++++.+++++.+++..|++. .+++.+.+.+++|+++++++
T Consensus 18 ~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~~~ 95 (302)
T TIGR00817 18 NIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSFTH 95 (302)
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHH
Confidence 45789997654669999999999988776554 22223334556789999999999997 89999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHH
Q 019311 82 AMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKG 161 (343)
Q Consensus 82 ~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 161 (343)
++.++.|+++++++++++|||+++++ +++++++++|+.+.. .+ +.+....|
T Consensus 96 li~~~~Pv~~~ll~~~~~~e~~~~~~------~~~l~l~~~Gv~l~~--~~---------------------~~~~~~~G 146 (302)
T TIGR00817 96 TIKAMEPFFSVVLSAFFLGQEFPSTL------WLSLLPIVGGVALAS--DT---------------------ELSFNWAG 146 (302)
T ss_pred HHHhcchHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHhhhc--CC---------------------cccccHHH
Confidence 99999999999999999999999997 999999999998754 11 11234579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hCCchhHHHHHHHHHHHHHHHHHHHHHccCCcc--ceee-----cchhhHHHHHH
Q 019311 162 ALMITAGCFSWSFFIILQAITLK--AYPAELSLTAWICFFGTVEGTLAALIMERGKAS--IWAI-----HWDTKLVASVY 232 (343)
Q Consensus 162 ~~~~l~a~~~~a~~~i~~k~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~ 232 (343)
++++++++++|+.|.+..|+..+ +. ++.....++...+.+.++|.....+..... .+.. .....+...+.
T Consensus 147 ~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (302)
T TIGR00817 147 FLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLV 225 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHH
Confidence 99999999999999999999887 55 478999999999999999988765531110 0000 00001111222
Q ss_pred HHHHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCc
Q 019311 233 SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 233 ~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~ 303 (343)
.+..+....+.+++.++++.++++.++..+++|+++++++++++||+++..+++|.+++++|++++.+.|+
T Consensus 226 ~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~ 296 (302)
T TIGR00817 226 AAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKA 296 (302)
T ss_pred HHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 23322333334666899999999999999999999999999999999999999999999999999987554
No 5
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.97 E-value=6.9e-30 Score=229.27 Aligned_cols=266 Identities=21% Similarity=0.292 Sum_probs=203.1
Q ss_pred cchhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhHH
Q 019311 2 DVLCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKY-TTATFA 80 (343)
Q Consensus 2 ~~~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~-~~~~~~ 80 (343)
++++|..+ ++++|..++++|+.++++.++++.. ++ +.+++ ..+..|++.....+.+++.++++ .+++.+
T Consensus 20 ~~~~k~~~-~~~~p~~~~~~R~~~a~~~l~~~~~---~~---~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a 89 (299)
T PRK11453 20 FVVIKVGL-HNMPPLMLAGLRFMLVAFPAIFFVA---RP---KVPLN---LLLGYGLTISFGQFAFLFCAINFGMPAGLA 89 (299)
T ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHhc---CC---CCchH---HHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 56789884 5699999999999998776655431 21 11222 34455665545666778889998 588999
Q ss_pred HHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhH
Q 019311 81 AAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIK 160 (343)
Q Consensus 81 ~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (343)
+++.++.|+++.+++++++|||+++++ +++++++++|+.++...+. ...+....
T Consensus 90 ~~l~~~~pi~~~ll~~~~l~e~~~~~~------~~~~~l~~~Gv~ll~~~~~--------------------~~~~~~~~ 143 (299)
T PRK11453 90 SLVLQAQAFFTIVLGAFTFGERLQGKQ------LAGIALAIFGVLVLIEDSL--------------------NGQHVAML 143 (299)
T ss_pred HHHHHhHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHhHHHhccccC--------------------CCcchhHH
Confidence 999999999999999999999999997 9999999999998873211 11122357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCch--hHHHHHHHHHHHHHHHHHHHHHccCCc--cceeecchhhHHHHHHHHHH
Q 019311 161 GALMITAGCFSWSFFIILQAITLKAYPAE--LSLTAWICFFGTVEGTLAALIMERGKA--SIWAIHWDTKLVASVYSGII 236 (343)
Q Consensus 161 G~~~~l~a~~~~a~~~i~~k~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ 236 (343)
|++++++++++|+.|.+..|+..++.+++ .....+....+.+.........+.+.. ..+...+...|..+++++++
T Consensus 144 G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~ 223 (299)
T PRK11453 144 GFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFV 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHH
Confidence 99999999999999999999987665432 233344444444333333333332110 11122244578899999999
Q ss_pred HHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCc
Q 019311 237 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 237 ~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~ 303 (343)
++.++|.+|++++++.++.+++.+.+++|+++.+++++++||++++.+++|++++++|+++..+.++
T Consensus 224 ~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 224 ATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999999999999999999999999999999999999999998876553
No 6
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.97 E-value=5.7e-29 Score=222.59 Aligned_cols=261 Identities=13% Similarity=0.097 Sum_probs=204.5
Q ss_pred cchhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 019311 2 DVLCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAA 81 (343)
Q Consensus 2 ~~~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ 81 (343)
+.++|.+++ +++|.+++++|+.++.++++++... ++ ++.+++++...+..|.+. ...+.++++++++++++.++
T Consensus 28 ~~~~K~~~~-~~~~~~~~~~R~~~a~l~l~~~~~~--~~--~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~ 101 (293)
T PRK10532 28 ASLAKSLFP-LVGAPGVTALRLALGTLILIAIFKP--WR--LRFAKEQRLPLLFYGVSL-GGMNYLFYLSIQTVPLGIAV 101 (293)
T ss_pred HHHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHhH--Hh--ccCCHHHHHHHHHHHHHH-HHHHHHHHHHHhcccHHHHH
Confidence 567899954 5999999999999999988776432 21 234577888888888876 88889999999999999999
Q ss_pred HHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHH
Q 019311 82 AMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKG 161 (343)
Q Consensus 82 ~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 161 (343)
++..+.|+++.+++. |++.+ ..++.++++|+.++...+. ........|
T Consensus 102 ~l~~t~Pi~~~ll~~----~~~~~--------~~~~~i~~~Gv~li~~~~~--------------------~~~~~~~~G 149 (293)
T PRK10532 102 ALEFTGPLAVALFSS----RRPVD--------FVWVVLAVLGLWFLLPLGQ--------------------DVSHVDLTG 149 (293)
T ss_pred HHHHHHHHHHHHHhc----CChHH--------HHHHHHHHHHHheeeecCC--------------------CcccCChHH
Confidence 999999999988763 44332 5567788999988762211 011223579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHH
Q 019311 162 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT 241 (343)
Q Consensus 162 ~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 241 (343)
++++++++++|+.|.+..|+..++.+ +... .+....+.+++.+.....+. .. ..+...+..++++|++++.++
T Consensus 150 ~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~----~~-~~~~~~~~~~l~lgv~~t~~~ 222 (293)
T PRK10532 150 AALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAG----EA-LWHWSILPLGLAVAILSTALP 222 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccC----cc-cCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877654 5554 45556666666666553221 11 112234556789999999999
Q ss_pred HHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCccCCC
Q 019311 242 YYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHK 307 (343)
Q Consensus 242 ~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~~~~ 307 (343)
|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|++++++|++...+..+||.|
T Consensus 223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~ 288 (293)
T PRK10532 223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK 288 (293)
T ss_pred HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999876655433
No 7
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.97 E-value=4.1e-29 Score=223.71 Aligned_cols=266 Identities=12% Similarity=0.107 Sum_probs=196.3
Q ss_pred cchhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cch
Q 019311 2 DVLCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKY----TTA 77 (343)
Q Consensus 2 ~~~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~----~~~ 77 (343)
|+.+|.+ .++++|..++++|+.++.++++++. .+++.+ ++ .++.+..+.+....++.+++.++++ +++
T Consensus 20 ~~~~k~~-~~~~~P~~~~~~R~~~a~l~l~~~~---~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a 91 (295)
T PRK11689 20 VGLIRGV-SESLGPVGGAAMIYSVSGLLLLLTV---GFPRLR---QF-PKRYLLAGGLLFVSYEICLALSLGYANTRRQA 91 (295)
T ss_pred HHHHHHH-HccCChHHHHHHHHHHHHHHHHHHc---cccccc---cc-cHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Confidence 5788998 5669999999999999999887653 121111 11 2223444555557788888888765 577
Q ss_pred hHHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccc
Q 019311 78 TFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHN 157 (343)
Q Consensus 78 ~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (343)
++++++.++.|+++.+++++++|||+++++ ++|++++++|+.++...+... +..+. ......
T Consensus 92 ~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~------~~g~~l~~~Gv~li~~~~~~~-----~~~~~-------~~~~~~ 153 (295)
T PRK11689 92 IEVGMVNYLWPSLTILFAVLFNGQKANWLL------IPGLLLALAGVAWVLGGDNGL-----SLAEL-------INNIAS 153 (295)
T ss_pred hHHHHHHHHhHHHHHHHHHHHhcCCccHHH------HHHHHHHHHhHhheecCCccc-----hhhhh-------hhcccc
Confidence 888999999999999999999999999997 999999999999987321100 00000 001112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHH
Q 019311 158 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC 237 (343)
Q Consensus 158 ~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (343)
...|++++++++++||.|.+..|+..++.+ +.... ...+.+.+.+.... +. +. ... .+...|..+++.++ +
T Consensus 154 ~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~~---~~~~~~~l~~~~~~-~~-~~-~~~-~~~~~~~~l~~~~~-~ 224 (295)
T PRK11689 154 NPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITLF---FILTALALWIKYFL-SP-QP-AMV-FSLPAIIKLLLAAA-A 224 (295)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhHH---HHHHHHHHHHHHHH-hc-Cc-ccc-CCHHHHHHHHHHHH-H
Confidence 356999999999999999999999876654 45432 22233333333322 22 11 111 23346777777775 6
Q ss_pred HHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccC
Q 019311 238 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 302 (343)
Q Consensus 238 ~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~ 302 (343)
++++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+.+
T Consensus 225 t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 225 MGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 89999999999999999999999999999999999999999999999999999999998886544
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.96 E-value=7.1e-28 Score=215.81 Aligned_cols=259 Identities=12% Similarity=0.063 Sum_probs=187.7
Q ss_pred cchhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 019311 2 DVLCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKIRP--KM-TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTAT 78 (343)
Q Consensus 2 ~~~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~ 78 (343)
++..|.. . +++|.+++++|+.++.++++++...+++++.. +. +++++.. ...+.+....++.++++|+++++++
T Consensus 24 ~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~ 100 (296)
T PRK15430 24 PAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFM-LAVSAVLIGGNWLLFIWAVNNHHML 100 (296)
T ss_pred HHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHH-HHHHHHHHHHHHHHHHHHHhcCchH
Confidence 4567876 3 59999999999999998887776543221110 01 2333333 3466666688999999999999999
Q ss_pred HHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccch
Q 019311 79 FAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNS 158 (343)
Q Consensus 79 ~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (343)
+++++.++.|+++.+++++++|||+++++ +++++++++|+.++...++ + .
T Consensus 101 ~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~------~~g~~l~~~Gv~li~~~~~---------------------~--~- 150 (296)
T PRK15430 101 EASLGYFINPLVNIVLGMIFLGERFRRMQ------WLAVILAICGVLVQLWTFG---------------------S--L- 150 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHHHHHHHHcC---------------------C--c-
Confidence 99999999999999999999999999998 9999999999999862111 0 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHH
Q 019311 159 IKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC 237 (343)
Q Consensus 159 ~~G~~~~l~a~~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (343)
..++++++++||.|.+..|+..++.. +......+....+.+...+. ... ....+...+...+..+...++ .
T Consensus 151 ---~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~g~-~ 222 (296)
T PRK15430 151 ---PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADS-STSHMGQNPMSLNLLLIAAGI-V 222 (296)
T ss_pred ---cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccC-CcccccCCcHHHHHHHHHHHH-H
Confidence 14688899999999998888643211 11222233333333222111 111 111111111112333344454 5
Q ss_pred HHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhcc
Q 019311 238 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 301 (343)
Q Consensus 238 ~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~ 301 (343)
+.+++.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|++++++|+.+....
T Consensus 223 t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 223 TTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999998777644
No 9
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=7.3e-27 Score=213.29 Aligned_cols=267 Identities=19% Similarity=0.201 Sum_probs=209.5
Q ss_pred cchhhhhhhCCCC-hhHHHHHHHHHHHHHHHHHHHHhccCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 019311 2 DVLCKAALNKGMS-PYVLVVYRHAAATIAMAPFAVILDKKIRPKM--TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTAT 78 (343)
Q Consensus 2 ~~~~k~~~~~~~~-p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~ 78 (343)
...+|.+++. ++ |+.++++|+.++.+++..+... +.+++++. .+++++..+..|+++. ..+.+.+.|+++++++
T Consensus 65 ~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~llp~gl~~~-~~~~~~~~sl~~~svs 141 (350)
T PTZ00343 65 VVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWAT-GFRKIPRIKSLKLFLKNFLPQGLCHL-FVHFGAVISMGLGAVS 141 (350)
T ss_pred HHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccHH
Confidence 3568999654 89 9999999999998776554322 22323334 2457888999999994 4466678999999999
Q ss_pred HHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccch
Q 019311 79 FAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNS 158 (343)
Q Consensus 79 ~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (343)
.++++.++.|+++++++++++|||+++++ +.+++++++|+++... + +.+..
T Consensus 142 ~~~iika~~Pvft~lls~~~l~ek~s~~~------~l~l~l~v~Gv~l~~~-~----------------------~~~~~ 192 (350)
T PTZ00343 142 FTHVVKAAEPVFTALLSILFLKQFLNLYA------YLSLIPIVGGVALASV-K----------------------ELHFT 192 (350)
T ss_pred HHHHHHHhhHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHheec-c----------------------cchhH
Confidence 99999999999999999999999999997 9999999999999873 1 12235
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCC------chhHHHHHHHHHHHHHHHHHHHHHccCC-ccce----eecchhhH
Q 019311 159 IKGALMITAGCFSWSFFIILQAITLKAYP------AELSLTAWICFFGTVEGTLAALIMERGK-ASIW----AIHWDTKL 227 (343)
Q Consensus 159 ~~G~~~~l~a~~~~a~~~i~~k~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~----~~~~~~~~ 227 (343)
..|++++++++++|+.+++..|+..++.+ ++.....+....++++++|+....|... ...+ .......+
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 67999999999999999999999887542 2444556667888888888887555311 1111 00011122
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhcc
Q 019311 228 VASVYSGIICSGLTYYIQGI----VMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 301 (343)
Q Consensus 228 ~~l~~~~~~~~~~~~~l~~~----a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~ 301 (343)
..+++. ++.+++++.+++. +++++++.+.++..+++|+++++++++++||++++.+++|++++++|++++.+.
T Consensus 273 ~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 273 GIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 334443 4457888888885 999999999999999999999999999999999999999999999999998764
No 10
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.96 E-value=2.7e-26 Score=204.36 Aligned_cols=280 Identities=17% Similarity=0.236 Sum_probs=221.3
Q ss_pred hhhhhhCCCC-hhHHHHHHHHHHHHHHHHHHHHhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 019311 5 CKAALNKGMS-PYVLVVYRHAAATIAMAPFAVILDKKI-RPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAA 82 (343)
Q Consensus 5 ~k~~~~~~~~-p~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~ 82 (343)
+..+...+.+ |....++.+..-.++..+...++++++ ..+..+++|+++++.+++- ..++.+.+.|++|++.+.+++
T Consensus 32 s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~D-v~aN~~~v~a~~yTsvtS~~l 110 (334)
T PF06027_consen 32 SSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLD-VEANYLVVLAYQYTSVTSVQL 110 (334)
T ss_pred HHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHH-HHHHHHHHHHhhcccHhHHHh
Confidence 3334344555 777778878777777766665543321 2223456788888899999 899999999999999999999
Q ss_pred HhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHH
Q 019311 83 MYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGA 162 (343)
Q Consensus 83 i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 162 (343)
+..+..+++++++++++|+|+++.+ ++|++++++|+.++...+.. +++++.+..+..+|+
T Consensus 111 L~~~~i~~~~~LS~~fL~~ry~~~~------~~gv~i~i~Gv~lv~~sD~~--------------~~~~~~~~~~~i~GD 170 (334)
T PF06027_consen 111 LDCTSIPFVMILSFIFLKRRYSWFH------ILGVLICIAGVVLVVVSDVL--------------SGSDSSSGSNPILGD 170 (334)
T ss_pred hhhhhhHHHHHHHHHHHHhhhhHHH------HHHHHHHHhhhhheeeeccc--------------ccccCCCCCccchhH
Confidence 9999999999999999999999997 99999999999998865532 111123445678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHHH
Q 019311 163 LMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTY 242 (343)
Q Consensus 163 ~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (343)
+++++|+++||++++..++..++.+ ......+..+++.++..+...+.|..+.+..+... ..........++.+.-|
T Consensus 171 ll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~--~~~~~~v~~~~~lf~~y 247 (334)
T PF06027_consen 171 LLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWTS--QVIGLLVGYALCLFLFY 247 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCCh--hhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875 67788888889999988888877763333333222 22233333344567788
Q ss_pred HHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCccCCCC
Q 019311 243 YIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKS 308 (343)
Q Consensus 243 ~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~~~~~ 308 (343)
.+....+++.+|+...+-..+..+++++++++++|+++++..++|.++|++|.+++...+++++++
T Consensus 248 ~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~ 313 (334)
T PF06027_consen 248 SLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEA 313 (334)
T ss_pred HHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccccc
Confidence 888899999999999999999999999999999999999999999999999999998766554433
No 11
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.95 E-value=1.3e-26 Score=206.27 Aligned_cols=260 Identities=15% Similarity=0.153 Sum_probs=187.6
Q ss_pred cchhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 019311 2 DVLCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILD-KKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFA 80 (343)
Q Consensus 2 ~~~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~ 80 (343)
++++|....+ -++ ..+++...+.++++++...+. ++.++..+++ ++..++.+.++...++.+++.|+++.+++++
T Consensus 17 ~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 92 (281)
T TIGR03340 17 NLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPAT-FWLLLAISAVANMVYFLGLAQAYHHADVGLV 92 (281)
T ss_pred HHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchh-hHHHHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence 4567755333 344 347777777777777766532 2222322334 4444444555558999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhH
Q 019311 81 AAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIK 160 (343)
Q Consensus 81 ~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (343)
+++.++.|+++.+++++++|||+++++ ++|+.++++|+.++...+. ......
T Consensus 93 ~~l~~~~p~~~~l~~~~~~~e~~~~~~------~~g~~~~~~Gv~ll~~~~~----------------------~~~~~~ 144 (281)
T TIGR03340 93 YPLARSSPLLVAIWATLTLGETLSPLA------WLGILIITLGLLVLGLSRF----------------------AQHRRK 144 (281)
T ss_pred hhHHhhhHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHhcccc----------------------cccchh
Confidence 999999999999999999999999998 9999999999998873211 112246
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchhH---HHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHH
Q 019311 161 GALMITAGCFSWSFFIILQAITLKAYPAELS---LTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC 237 (343)
Q Consensus 161 G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (343)
|+.++++++++|+.|.+..|+..++.++... ...+......+...+.....+. . ... .....++.+++.+.++
T Consensus 145 g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~~~~~ 220 (281)
T TIGR03340 145 AYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHG-R--SMF-PYARQILPSATLGGLM 220 (281)
T ss_pred HHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhc-c--chh-hhHHHHHHHHHHHHHH
Confidence 7889999999999999988876544332111 1222222221111111111111 1 111 1223456777888888
Q ss_pred HHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhh
Q 019311 238 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYL 297 (343)
Q Consensus 238 ~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l 297 (343)
+.++|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|++++++|+.+
T Consensus 221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999999999999999999999999999999999999875
No 12
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.92 E-value=3.7e-23 Score=181.72 Aligned_cols=232 Identities=12% Similarity=0.070 Sum_probs=167.4
Q ss_pred cchhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCC-----CCCCCHHH-HHHHHHHHHHHHHHHHHHHHHhhccc
Q 019311 2 DVLCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKI-----RPKMTLAI-LTKLLLLGLLEPVIDQNLYFIGMKYT 75 (343)
Q Consensus 2 ~~~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~al~~~ 75 (343)
+++.|.+ . +++|.+++++|+.++.++++++...+++++ .++.++++ +......|++. ..++.+++.|++++
T Consensus 18 ~~~~k~~-~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~a~~~~ 94 (256)
T TIGR00688 18 YYYSKLL-K-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI-GFNWWLFIWAVNNG 94 (256)
T ss_pred HHHHHHh-c-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH-HHHHHHHHHHHHcc
Confidence 4678874 4 599999999999999988877664433211 11122333 34456677765 89999999999999
Q ss_pred chhHHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCc
Q 019311 76 TATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTT 155 (343)
Q Consensus 76 ~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (343)
++++++++.++.|+++++++++++|||+++++ +++++++++|+.++...++ +
T Consensus 95 ~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~~~~~---------------------~- 146 (256)
T TIGR00688 95 SSLEVSLGYLINPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNIVLKG---------------------S- 146 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHcC---------------------C-
Confidence 99999999999999999999999999999997 9999999999998862111 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHH
Q 019311 156 HNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGI 235 (343)
Q Consensus 156 ~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (343)
.. .++++++++|+.|.+..|+..++ + ....... .........+.....+. . ......+...|..+++.|+
T Consensus 147 -~~----~~~l~aa~~~a~~~i~~~~~~~~-~-~~~~~~~-~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~g~ 216 (256)
T TIGR00688 147 -LP----WEALVLAFSFTAYGLIRKALKNT-D-LAGFCLE-TLSLMPVAIYYLLQTDF-A-TVQQTNPFPIWLLLVLAGL 216 (256)
T ss_pred -ch----HHHHHHHHHHHHHHHHHhhcCCC-C-cchHHHH-HHHHHHHHHHHHHHhcc-C-cccccCchhHHHHHHHHHH
Confidence 11 35788999999999999886543 2 2222211 11122222212111111 1 1111112236777888887
Q ss_pred HHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHH
Q 019311 236 ICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTII 275 (343)
Q Consensus 236 ~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~ 275 (343)
+ +.++|.++++++++.++++++++.+++|+++.+++.++
T Consensus 217 ~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 217 I-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred H-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 6 88999999999999999999999999999999999764
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.91 E-value=7.1e-22 Score=176.69 Aligned_cols=262 Identities=23% Similarity=0.316 Sum_probs=196.2
Q ss_pred hhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 019311 4 LCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAM 83 (343)
Q Consensus 4 ~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i 83 (343)
..|.......++....+.|...+.+...+.... ++....+. .+.+.+..+.+.+.....+.+++.++++++++.++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (292)
T COG0697 25 ALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRPA-LRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLI 102 (292)
T ss_pred HHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 345552223667777777999888874333322 11111111 1224556666666669999999999999999999999
Q ss_pred hchhHHHHHHHHH-HHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHH
Q 019311 84 YNILPAITFLMAW-IIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGA 162 (343)
Q Consensus 84 ~~~~p~~~~lla~-~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 162 (343)
.++.|+++.++++ +++|||+++++ +.++.++++|+.++...++. .... ...|+
T Consensus 103 ~~~~p~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~Gv~lv~~~~~~-------------------~~~~-~~~g~ 156 (292)
T COG0697 103 IGLLPLFTALLAVLLLLGERLSLLQ------ILGILLALAGVLLILLGGGG-------------------GGIL-SLLGL 156 (292)
T ss_pred HHHHHHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHheecCCCc-------------------chhH-HHHHH
Confidence 9999999999997 66799999997 99999999999999843321 1111 57899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHH
Q 019311 163 LMITAGCFSWSFFIILQAITLKAYPAELSLTA-WICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT 241 (343)
Q Consensus 163 ~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 241 (343)
.++++++++|+.+.+..|+.. +.+ +..... +... ............. . . .......+..+.+.++++++++
T Consensus 157 ~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~~~~~~~~~~~--~-~-~~~~~~~~~~~~~~g~~~~~i~ 228 (292)
T COG0697 157 LLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLL--LALLLLLLFFLSG--F-G-APILSRAWLLLLYLGVFSTGLA 228 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHH--HHHHHHHHHHhcc--c-c-ccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887 443 344444 3333 1222222211111 1 1 1223347888889999888899
Q ss_pred HHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhcc
Q 019311 242 YYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 301 (343)
Q Consensus 242 ~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~ 301 (343)
+.++++++++.++..++.+.+++|+++.++++++++|+++..+++|+++++.|+.+...+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999998765
No 14
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.90 E-value=7.4e-22 Score=163.12 Aligned_cols=257 Identities=14% Similarity=0.105 Sum_probs=207.3
Q ss_pred hhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 019311 4 LCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAM 83 (343)
Q Consensus 4 ~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i 83 (343)
+.|.+.. .+.|.-.+.+|..+++++++++. |+.+.+.++++++..+..|+.. ..-|.+||.+++..|.+.+..+
T Consensus 30 ~Ak~LFP-~vG~~g~t~lRl~~aaLIll~l~----RPwr~r~~~~~~~~~~~yGvsL-g~MNl~FY~si~riPlGiAVAi 103 (292)
T COG5006 30 FAKSLFP-LVGAAGVTALRLAIAALILLALF----RPWRRRLSKPQRLALLAYGVSL-GGMNLLFYLSIERIPLGIAVAI 103 (292)
T ss_pred HHHHHcc-ccChhhHHHHHHHHHHHHHHHHh----hHHHhccChhhhHHHHHHHHHH-HHHHHHHHHHHHhccchhhhhh
Confidence 4566643 37899999999999999988765 3334567789999999999988 7888999999999999999999
Q ss_pred hchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHHH
Q 019311 84 YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGAL 163 (343)
Q Consensus 84 ~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 163 (343)
-++-|+..++++- |+. ++ .+.+.+++.|+.++.- .+ ++....+..|..
T Consensus 104 EF~GPL~vA~~~s---Rr~---~d------~vwvaLAvlGi~lL~p-~~-------------------~~~~~lDp~Gv~ 151 (292)
T COG5006 104 EFTGPLAVALLSS---RRL---RD------FVWVALAVLGIWLLLP-LG-------------------QSVWSLDPVGVA 151 (292)
T ss_pred hhccHHHHHHHhc---cch---hh------HHHHHHHHHHHHhhee-cc-------------------CCcCcCCHHHHH
Confidence 9999999776643 222 22 5667788889888873 22 123446679999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHHHH
Q 019311 164 MITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYY 243 (343)
Q Consensus 164 ~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 243 (343)
+++.++.||+.|.+..||..+..+ ....+...+..++++.+|+...... .....+.-...-+..+++.+.+.|.
T Consensus 152 ~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag-----~~l~~p~ll~laLgvavlSSalPYs 225 (292)
T COG5006 152 LALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAG-----PALFSPSLLPLALGVAVLSSALPYS 225 (292)
T ss_pred HHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcc-----hhhcChHHHHHHHHHHHHhcccchH
Confidence 999999999999999999886554 4566778889999999999874332 1122333455566778889999999
Q ss_pred HHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCcc
Q 019311 244 IQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 304 (343)
Q Consensus 244 l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~ 304 (343)
+...++++.+....+.++.+||.++.+.+++++||.+++.||.|++.++.+..-..+..+|
T Consensus 226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~ 286 (292)
T COG5006 226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK 286 (292)
T ss_pred HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 9999999999999999999999999999999999999999999999999998766654443
No 15
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.90 E-value=8.1e-25 Score=181.70 Aligned_cols=276 Identities=15% Similarity=0.145 Sum_probs=208.9
Q ss_pred CcchhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 019311 1 MDVLCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFA 80 (343)
Q Consensus 1 ~~~~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~ 80 (343)
|++.+|.+ +.+|.+..-.|++..++...|...+.+.... -+..+..++++.|..+ ..+..+.|+|++|++.+++
T Consensus 53 ~vv~t~~~---e~~p~e~a~~r~l~~mlit~pcliy~~~~v~--gp~g~R~~LiLRg~mG-~tgvmlmyya~~~mslaDA 126 (346)
T KOG4510|consen 53 MVVSTKVL---ENDPMELASFRLLVRMLITYPCLIYYMQPVI--GPEGKRKWLILRGFMG-FTGVMLMYYALMYMSLADA 126 (346)
T ss_pred HHhhhhhh---ccChhHhhhhhhhhehhhhheEEEEEeeeee--cCCCcEEEEEeehhhh-hhHHHHHHHHHhhcchhhe
Confidence 34555655 4789999999998888888877766444321 1234455778889988 7778889999999999999
Q ss_pred HHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhH
Q 019311 81 AAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIK 160 (343)
Q Consensus 81 ~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (343)
+++...+|+++.+++|+++|||.++.+ .++..+.+.|+++++- |.+.+.+.....+ .+..+....
T Consensus 127 ~vItFssPvft~ifaw~~LkE~~t~~e------aL~s~itl~GVVLIvR---PpFlFG~~t~g~~------~s~~~~~~~ 191 (346)
T KOG4510|consen 127 VVITFSSPVFTIIFAWAFLKEPFTKFE------ALGSLITLLGVVLIVR---PPFLFGDTTEGED------SSQVEYDIP 191 (346)
T ss_pred EEEEecChHHHHHHHHHHHcCCCcHHH------HHHHHHhhheEEEEec---CCcccCCCccccc------cccccccCC
Confidence 999999999999999999999999998 9999999999999983 2222221111111 111344567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHH
Q 019311 161 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 240 (343)
Q Consensus 161 G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (343)
|...++.+++.-|...++.|+..|+.+..+. ..+....+.+..+......+. -.++. ...+|+..+.+|++ +++
T Consensus 192 gt~aai~s~lf~asvyIilR~iGk~~h~~ms-vsyf~~i~lV~s~I~~~~ig~---~~lP~-cgkdr~l~~~lGvf-gfi 265 (346)
T KOG4510|consen 192 GTVAAISSVLFGASVYIILRYIGKNAHAIMS-VSYFSLITLVVSLIGCASIGA---VQLPH-CGKDRWLFVNLGVF-GFI 265 (346)
T ss_pred chHHHHHhHhhhhhHHHHHHHhhccccEEEE-ehHHHHHHHHHHHHHHhhccc---eecCc-cccceEEEEEehhh-hhH
Confidence 7888888888888888999998888764333 334344444444443332221 12222 23467777888986 899
Q ss_pred HHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCc
Q 019311 241 TYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 241 ~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~ 303 (343)
++.+...++|+..+..+++..+.+.+++++++.++|+|.|+++.|.|+++++...+....+|.
T Consensus 266 gQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 266 GQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred HHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887765443
No 16
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.88 E-value=1.9e-20 Score=168.37 Aligned_cols=268 Identities=15% Similarity=0.188 Sum_probs=211.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhchhHHHHHH
Q 019311 14 SPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFL 93 (343)
Q Consensus 14 ~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~l 93 (343)
.|..+++..+....++..+.....++++. ++..+..++..+++. .++..+.+.|++|.+.+...++.++.|+.+++
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi 106 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILLSLFKFPKS---RKIPLKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPVMI 106 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccccCC---CcChHHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHH
Confidence 38899999998888887776655332222 334466667778887 88889999999999999999999999999999
Q ss_pred HHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHH
Q 019311 94 MAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWS 173 (343)
Q Consensus 94 la~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a 173 (343)
++.+++|+|.++++ +.++++..+|+.+....+... ++.++........|+++.+++.++.|
T Consensus 107 ~~~l~~~k~y~~~~------~~~v~li~~Gv~~~~~~~~~~-------------~~~~~~~~~~~~~G~~ll~~sl~~~a 167 (303)
T PF08449_consen 107 LGVLILGKRYSRRQ------YLSVLLITIGVAIFTLSDSSS-------------SSSSNSSSFSSALGIILLLLSLLLDA 167 (303)
T ss_pred HHHHhcCccccHHH------HHHHHHHHhhHheeeeccccc-------------ccccccccccchhHHHHHHHHHHHHH
Confidence 99999999999997 999999999999998655321 11111122223349999999999999
Q ss_pred HHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHH--Hcc-CCccceeecchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 019311 174 FFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALI--MER-GKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVM 249 (343)
Q Consensus 174 ~~~i~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~--~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~a~ 249 (343)
.+.+.+++..++++ ++...+++....+.+...+.... .+. .+...+....+..+..++...+ ++.+++...+...
T Consensus 168 ~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~ 246 (303)
T PF08449_consen 168 FTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLI 246 (303)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999998776 56888999999999888887776 222 0111111122334444445445 5788888888999
Q ss_pred ccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCccC
Q 019311 250 KDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 305 (343)
Q Consensus 250 ~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~~ 305 (343)
++.++...+++..++.+++++++.+++++++++.+|+|.++++.|..++.+.++|+
T Consensus 247 ~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 247 KKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999877654
No 17
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.86 E-value=1.4e-19 Score=153.76 Aligned_cols=259 Identities=14% Similarity=0.112 Sum_probs=204.4
Q ss_pred hhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 019311 4 LCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKIRP---KMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFA 80 (343)
Q Consensus 4 ~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~ 80 (343)
..|.+ ++.++.++...|...+..+++.+....++++.. .-+++.+....+.+++. ..++..|.+|......-++
T Consensus 25 y~kll--~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li-~~nW~lfiWAvn~g~~lea 101 (293)
T COG2962 25 YFKLL--EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI-GLNWWLFIWAVNNGHVLEA 101 (293)
T ss_pred HHHHH--ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH-HHHHHHhheecCCCchhHH
Confidence 34555 469999999999999999988877765443311 11356677777777777 9999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhH
Q 019311 81 AAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIK 160 (343)
Q Consensus 81 ~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (343)
+.=+++.|++.++++++++|||+++.| +++++++.+||....+..|. -.
T Consensus 102 SLGY~InPL~~VllG~lflkErls~~Q------~iAV~lA~~GV~~~~~~~g~-----------------------lp-- 150 (293)
T COG2962 102 SLGYFINPLVNVLLGRLFLKERLSRLQ------WIAVGLAAAGVLIQTWLLGS-----------------------LP-- 150 (293)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHcCC-----------------------Cc--
Confidence 999999999999999999999999998 99999999999999865441 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHH
Q 019311 161 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 240 (343)
Q Consensus 161 G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (343)
..++.=++.|+.|... ||..+ .+ +.+-...-...-.+..+.+.+..+. ..+.....+...+..++..|.+ +++
T Consensus 151 --wval~la~sf~~Ygl~-RK~~~-v~-a~~g~~lE~l~l~p~al~yl~~l~~-~~~~~~~~~~~~~~LLv~aG~v-Tav 223 (293)
T COG2962 151 --WVALALALSFGLYGLL-RKKLK-VD-ALTGLTLETLLLLPVALIYLLFLAD-SGQFLQQNANSLWLLLVLAGLV-TAV 223 (293)
T ss_pred --HHHHHHHHHHHHHHHH-HHhcC-Cc-hHHhHHHHHHHHhHHHHHHHHHHhc-CchhhhcCCchHHHHHHHhhHH-HHH
Confidence 2445557899999875 44344 23 4555556666666666666655554 2221222344466777777775 999
Q ss_pred HHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCc
Q 019311 241 TYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 241 ~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~ 303 (343)
+..++..+.++++-+..+.++|.+|..-.+++.+++||+++..+++..++|.+|..++....-
T Consensus 224 pL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l 286 (293)
T COG2962 224 PLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL 286 (293)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986543
No 18
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.84 E-value=1.1e-18 Score=155.61 Aligned_cols=257 Identities=14% Similarity=0.127 Sum_probs=188.4
Q ss_pred chhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 019311 3 VLCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAA 82 (343)
Q Consensus 3 ~~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~ 82 (343)
+..|.. . +.++.++. |..++.+++..+....+.+ ++..++.+...++.|++- ..++.+++.+.++++.+.+..
T Consensus 18 ~~~k~~-~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~--~~~~~~~~~~g~l~G~~w-~ig~~~~~~ai~~~gva~a~~ 90 (290)
T TIGR00776 18 LINVKI-G-GGPYSQTL--GTTFGALILSIAIAIFVLP--EFWALSIFLVGLLSGAFW-ALGQINQFKSMRYMGVSKTMP 90 (290)
T ss_pred HHHhcc-C-CCHHHHHH--HHHHHHHHHHHHHHHHhCC--cccccHHHHHHHHHHHHH-HhhhhhHHHHHHHHhHHHHhH
Confidence 456666 3 67877775 7777777776665543321 122245455566666664 889999999999999999999
Q ss_pred Hhc-hhHHHHHHHHHHHhhccccccccccchh----hHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccc
Q 019311 83 MYN-ILPAITFLMAWIIRLENVNLKSIRSLAK----VIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHN 157 (343)
Q Consensus 83 i~~-~~p~~~~lla~~~~~e~~~~~~~~~~~k----~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (343)
+.+ +.+++..+.+.+++||+.+++ | ++|++++++|+.++...+++. . ++.+..+
T Consensus 91 i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~----------~-----~~~~~~~ 149 (290)
T TIGR00776 91 ISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKS----------A-----GIKSEFN 149 (290)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEeccccc----------c-----ccccccc
Confidence 997 999999999999999999877 6 888999999988886432210 0 0000023
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHH----HHHHHHHHHHHHHccCCccceeecchhhHHHHHHH
Q 019311 158 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICF----FGTVEGTLAALIMERGKASIWAIHWDTKLVASVYS 233 (343)
Q Consensus 158 ~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 233 (343)
..+|..++++++++|+.|.+..|+. + + +|....+.+.. .+.++..+. . . . ..+ .+. ..+.....
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~-~-~-~~~~~~~~~~~g~~~~~~~~~~~~-~---~-~-~~~--~~~-~~~~~~~~ 217 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAF-G-V-DGLSVLLPQAIGMVIGGIIFNLGH-I---L-A-KPL--KKY-AILLNILP 217 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc-C-C-CcceehhHHHHHHHHHHHHHHHHH-h---c-c-cch--HHH-HHHHHHHH
Confidence 3679999999999999999999875 2 4 36666444444 333322222 0 1 1 111 122 33334448
Q ss_pred HHHHHHHHHHHHHHhhc-cCCceeeeechhHHHHHHHHHHHHHhccccchhhH----HHHHHHHHhhhhhhc
Q 019311 234 GIICSGLTYYIQGIVMK-DRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI----IGAIIIIGGLYLVVW 300 (343)
Q Consensus 234 ~~~~~~~~~~l~~~a~~-~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~----iG~~li~~G~~l~~~ 300 (343)
|++ ..+++.+|..+.+ +.+++..+.+.+.+|+.+.+++++++||+.++.++ +|+++++.|+.+...
T Consensus 218 Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 218 GLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 887 7999999999999 99999999999999999999999999999999999 999999999988754
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.84 E-value=1.2e-19 Score=158.15 Aligned_cols=229 Identities=14% Similarity=0.203 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCc
Q 019311 54 LLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGP 133 (343)
Q Consensus 54 ~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~ 133 (343)
+....+= .+++..++.|+.+++++..+++.+++-+|+.+++.++.+||+++. |.+++.+++.|++++...+.+
T Consensus 163 l~fc~lW-F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~ 235 (416)
T KOG2765|consen 163 LFFCPLW-FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSK 235 (416)
T ss_pred HHHHHHH-HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccc
Confidence 3444443 888999999999999999999999999999999999999999999 599999999999999865431
Q ss_pred ccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCC---chhHHHHHHHHHHHHHHHHHHHH
Q 019311 134 ILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP---AELSLTAWICFFGTVEGTLAALI 210 (343)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~ 210 (343)
+.++..+.....|+++++++++.||.|.++.|+...+.+ |--.+..+..++..+++.|..++
T Consensus 236 ---------------~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~i 300 (416)
T KOG2765|consen 236 ---------------QNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLII 300 (416)
T ss_pred ---------------ccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHH
Confidence 122334456689999999999999999999999877663 21222334445556666666655
Q ss_pred HccCCccceeecchhhHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHH
Q 019311 211 MERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAII 290 (343)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~l 290 (343)
.+....+.++.++......++..+++.++++-++|.+|.-.+++..+++-+.++.+.+++.+.++-+.++++.+++|.+.
T Consensus 301 L~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~ 380 (416)
T KOG2765|consen 301 LDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIP 380 (416)
T ss_pred HHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 54434455666666667778888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhccCcc
Q 019311 291 IIGGLYLVVWGKSK 304 (343)
Q Consensus 291 i~~G~~l~~~~~~~ 304 (343)
|++|.++.++....
T Consensus 381 Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 381 IFVGFVIVNISSEN 394 (416)
T ss_pred HHHHHhheeccccc
Confidence 99999998875543
No 20
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.81 E-value=1.6e-19 Score=158.95 Aligned_cols=274 Identities=17% Similarity=0.207 Sum_probs=220.2
Q ss_pred cchhhhhhhC-CCC-hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 019311 2 DVLCKAALNK-GMS-PYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATF 79 (343)
Q Consensus 2 ~~~~k~~~~~-~~~-p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~ 79 (343)
...+|..++. +.+ |..++.++...+.+..+.....+..+..+..++..+...+..|++. .++..+-+.++.+.+++.
T Consensus 33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF 111 (316)
T KOG1441|consen 33 IILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSF 111 (316)
T ss_pred EEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccchhH
Confidence 3567888762 444 9999999887777777666555444333333556788889999998 899999999999999999
Q ss_pred HHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchh
Q 019311 80 AAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSI 159 (343)
Q Consensus 80 ~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (343)
++.+..++|++++++++++.+|+.+... +..+.....|+.+... ++.+.+.
T Consensus 112 ~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~-----------------------~e~~fn~ 162 (316)
T KOG1441|consen 112 YQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASV-----------------------TELSFNL 162 (316)
T ss_pred HHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeee-----------------------ccccccH
Confidence 9999999999999999999999999998 9999999999999884 2344678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--CC-chhHHHHHHHHHHHHHHH-HHHHHHccCCccc-eee-cchhhHHHHHHH
Q 019311 160 KGALMITAGCFSWSFFIILQAITLKA--YP-AELSLTAWICFFGTVEGT-LAALIMERGKASI-WAI-HWDTKLVASVYS 233 (343)
Q Consensus 160 ~G~~~~l~a~~~~a~~~i~~k~~~~~--~~-~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~-~~~-~~~~~~~~l~~~ 233 (343)
.|.+.++++.+..+..+++.|+..++ .+ +++++..++...+.+.++ |.....++ +... +.. .........++.
T Consensus 163 ~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 241 (316)
T KOG1441|consen 163 FGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEG-NKFVGFLTAPWFVTFLILLLN 241 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcc-cceeeeeccccchhhHHHHHH
Confidence 99999999999999999999999852 22 679999999999999888 87776665 2220 011 111123333344
Q ss_pred HHHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCccCCC
Q 019311 234 GIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHK 307 (343)
Q Consensus 234 ~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~~~~ 307 (343)
. ++...-+...+..+.+++|.+.++.....-++.++.++++|+++.++.+..|+++.++|+.++.+.+.++++
T Consensus 242 s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 242 S-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred H-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4 346666777888999999999999999999999999999999999999999999999999999987776554
No 21
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.79 E-value=1.8e-17 Score=135.74 Aligned_cols=264 Identities=11% Similarity=0.093 Sum_probs=202.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhchhHHHHHHH
Q 019311 15 PYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLM 94 (343)
Q Consensus 15 p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~ll 94 (343)
...+++.....-.++.-++..++++. +.+...-+.+..+++.. .+++...+.|++|+|-....+-.++.|+-++++
T Consensus 53 alaLVf~qC~~N~vfAkvl~~ir~~~---~~D~t~~~~YaAcs~sY-LlAMVssN~Alq~vpYPTqVlgKScKPIPVMil 128 (337)
T KOG1580|consen 53 ALALVFFQCTANTVFAKVLFLIRKKT---EIDNTPTKMYAACSASY-LLAMVSSNQALQYVPYPTQVLGKSCKPIPVMIL 128 (337)
T ss_pred HHHHHHHHHHHHHHHHHhheeecccc---cccCCcchHHHHHHHHH-HHHHHhccchhcccCCcHHHhcccCCCcceeee
Confidence 34455555555555443333332221 12222223345555544 888899999999999999999999999999999
Q ss_pred HHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHH
Q 019311 95 AWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSF 174 (343)
Q Consensus 95 a~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~ 174 (343)
+.++.+++.+++. +.+++++++|+++....+++. ++........|.++.+++-..-+.
T Consensus 129 GVl~~~KsY~w~k------Y~cVL~IV~GValFmYK~~Kv----------------~g~e~~t~g~GElLL~lSL~mDGl 186 (337)
T KOG1580|consen 129 GVLFAHKSYHWRK------YCCVLMIVVGVALFMYKENKV----------------GGAEDKTFGFGELLLILSLAMDGL 186 (337)
T ss_pred ehhhhcccccHHH------HHHHHHHHHHHHHhhcccccc----------------CCCcccccchHHHHHHHHHHhccc
Confidence 9999999999995 999999999999998543321 234556778999999999999999
Q ss_pred HHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHHcc-CCccceeecchhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019311 175 FIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMER-GKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDR 252 (343)
Q Consensus 175 ~~i~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~a~~~~ 252 (343)
....+.+..+.+. ....++++.++.+.+.+..-.++.+. ++...+....+..|+.+..+++ ++++++++.+.-+.+.
T Consensus 187 Tg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~F 265 (337)
T KOG1580|consen 187 TGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEF 265 (337)
T ss_pred chhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHh
Confidence 9999888776654 34678888889888877766655432 1222223334556778888888 5999999999999999
Q ss_pred CceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCccC
Q 019311 253 GPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 305 (343)
Q Consensus 253 ~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~~ 305 (343)
+|...+++......|+++.+.++++++++.+||+|..+++.|...-....++.
T Consensus 266 gPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~a 318 (337)
T KOG1580|consen 266 GPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKKA 318 (337)
T ss_pred CCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCcC
Confidence 99999999999999999999999999999999999999999988877655443
No 22
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.71 E-value=2e-15 Score=128.59 Aligned_cols=257 Identities=15% Similarity=0.174 Sum_probs=196.8
Q ss_pred CCCC-hhHHHHHHHHHHHHHHHHHHHHhccCCCC---CCCHHHHH-HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhc
Q 019311 11 KGMS-PYVLVVYRHAAATIAMAPFAVILDKKIRP---KMTLAILT-KLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYN 85 (343)
Q Consensus 11 ~~~~-p~~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~ 85 (343)
++++ |+.++.+++.+-.++........+++.++ +.+|++.+ ++...|+.. ++.-.+.+++++|++.+.+++..+
T Consensus 40 ~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGLSN~sl~yVtlSlYTM~KS 118 (349)
T KOG1443|consen 40 KNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT-ALDIGLSNWSLEYVTLSLYTMTKS 118 (349)
T ss_pred cCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh-hcccccccceeeeeeeeeeeeccc
Confidence 3455 88888888877777666555544433322 45677655 556667776 999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHHHHH
Q 019311 86 ILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMI 165 (343)
Q Consensus 86 ~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 165 (343)
..++|+.+++.++.-||.++.- ..-++++.+|+.+.+.. ..+....|..+.
T Consensus 119 Ssi~FIllFs~if~lEk~~w~L------~l~v~lI~~Glflft~K-----------------------sTqf~i~Gf~lv 169 (349)
T KOG1443|consen 119 SSILFILLFSLIFKLEKFRWAL------VLIVLLIAVGLFLFTYK-----------------------STQFNIEGFFLV 169 (349)
T ss_pred cHHHHHHHHHHHHHhHHHHHHH------HHHHHHHhhheeEEEec-----------------------ccceeehhHHHH
Confidence 9999999999999999999985 66667777777777742 223567899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC----chhHHHHHHHHHHHHHHHHHHHHHccCCcc----ceeecch-hhHHHHHHHHHH
Q 019311 166 TAGCFSWSFFIILQAITLKAYP----AELSLTAWICFFGTVEGTLAALIMERGKAS----IWAIHWD-TKLVASVYSGII 236 (343)
Q Consensus 166 l~a~~~~a~~~i~~k~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~-~~~~~l~~~~~~ 236 (343)
.+++++-++-+...+..+++.+ +|....+.......+.++|..+..|+.... .+...+. ..+..+..+++
T Consensus 170 ~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l- 248 (349)
T KOG1443|consen 170 LAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL- 248 (349)
T ss_pred HHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-
Confidence 9999999999999998888765 688888888888888999999988873221 1211121 12222222222
Q ss_pred HHHHHH---HHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhh
Q 019311 237 CSGLTY---YIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLV 298 (343)
Q Consensus 237 ~~~~~~---~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~ 298 (343)
++..++ ...+.-+.+++....++.....-+.+.+++.++.+|.++...|.|..+...|+.+.
T Consensus 249 ~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 249 GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 233333 33455688899999999999999999999999999999999999999999999988
No 23
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.5e-15 Score=129.36 Aligned_cols=265 Identities=14% Similarity=0.160 Sum_probs=212.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhchhHHHHHH
Q 019311 14 SPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFL 93 (343)
Q Consensus 14 ~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~l 93 (343)
+|..+.+.+-+.+.++-.....+++++ ...++.|+.+...++.+ .++..|-+.|++|++-....+..++--+-+++
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~---~~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVml 125 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKKE---LSGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVML 125 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccccc---CCCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHHH
Confidence 577778887777777765444332222 22345577888888888 88999999999999999999999999999999
Q ss_pred HHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHH
Q 019311 94 MAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWS 173 (343)
Q Consensus 94 la~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a 173 (343)
++.++.|.|.+..+ ++...+.-.|+.+....+.. ++++....++..+|..+....-++-+
T Consensus 126 mg~Lvy~~ky~~~e------Yl~~~LIs~GvsiF~l~~~s--------------~s~~~~g~~ns~~G~~Ll~~~L~fDg 185 (327)
T KOG1581|consen 126 MGTLVYGRKYSSFE------YLVAFLISLGVSIFSLFPNS--------------DSSSKSGRENSPIGILLLFGYLLFDG 185 (327)
T ss_pred HHHHHhcCccCcHH------HHHHHHHHhheeeEEEecCC--------------CCccccCCCCchHhHHHHHHHHHHHh
Confidence 99999999999996 99999999999888865431 12334556688899999999999999
Q ss_pred HHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHHccCCcc--ceeecchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 019311 174 FFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKAS--IWAIHWDTKLVASVYSGIICSGLTYYIQGIVMK 250 (343)
Q Consensus 174 ~~~i~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~a~~ 250 (343)
+.+..+.++.+++. ++..+++..++++++.........+. ... .+-...+..+.-++.... ++.+++.+.++-++
T Consensus 186 fTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~-~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~ 263 (327)
T KOG1581|consen 186 FTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGH-LLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIE 263 (327)
T ss_pred hHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCC-CchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHh
Confidence 99999999988765 57899999999999888777432222 111 111123345666666676 58999999999999
Q ss_pred cCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCcc
Q 019311 251 DRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 304 (343)
Q Consensus 251 ~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~ 304 (343)
+.++.+.+.++.++-+++.+++.+.+++++++.||+|..+++.|+.+-.+-+++
T Consensus 264 ~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 264 RFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988876665
No 24
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.68 E-value=7e-15 Score=126.99 Aligned_cols=230 Identities=17% Similarity=0.216 Sum_probs=168.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhh
Q 019311 46 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM 125 (343)
Q Consensus 46 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~ 125 (343)
++++.+++.+.+++. .+.+.+.+.++++++++..+++.++..+++++++++++|+|++++| |.++.+.++|+.
T Consensus 13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~q------W~aL~lL~~Gv~ 85 (244)
T PF04142_consen 13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQ------WLALFLLVAGVV 85 (244)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhh------HHHHHHHHHHHh
Confidence 367788889999998 9999999999999999999999999999999999999999999998 999999999999
Q ss_pred hheeecCcccccccccCCCCCCCC-CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHH
Q 019311 126 VMTLIKGPILELFWTKGAENHGHG-SSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAEL-SLTAWICFFGTVE 203 (343)
Q Consensus 126 li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~-~~~~~~~~~~~i~ 203 (343)
++...+.... +.+++++ ..+....+...|.++.++++++.++..+..++..|+.+.+. ....+....+.++
T Consensus 86 lv~~~~~~~~-------~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~ 158 (244)
T PF04142_consen 86 LVQLSSSQSS-------DNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILF 158 (244)
T ss_pred eeecCCcccc-------ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 9875433210 0000000 00123445679999999999999999999999999875333 3333444555555
Q ss_pred HHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchh
Q 019311 204 GTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLG 283 (343)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~ 283 (343)
.++.....+.....+.......++ ..+..++...++-.+....+||.+...=........+++.++++++++.+++..
T Consensus 159 ~~~~~~~~~~~~~~~~g~f~G~~~--~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~ 236 (244)
T PF04142_consen 159 NLLALLLSDGSAISESGFFHGYSW--WVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS 236 (244)
T ss_pred HHHHHhcccccccccCCchhhcch--HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence 544443333211111111111122 223333445556666777899999999999999999999999999999999999
Q ss_pred hHHHHHHH
Q 019311 284 RIIGAIII 291 (343)
Q Consensus 284 ~~iG~~li 291 (343)
..+|+.++
T Consensus 237 f~lg~~~V 244 (244)
T PF04142_consen 237 FLLGAALV 244 (244)
T ss_pred HhhheecC
Confidence 99998753
No 25
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.66 E-value=1.9e-16 Score=131.32 Aligned_cols=260 Identities=15% Similarity=0.251 Sum_probs=204.8
Q ss_pred hCCCC-hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhchhH
Q 019311 10 NKGMS-PYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILP 88 (343)
Q Consensus 10 ~~~~~-p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p 88 (343)
..+++ |..-+|+.+..-+++.-+++.+++ +.-+..|+.++++++.- .-++.+...|.||++......+..-..
T Consensus 42 ~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-----~~~~~~~~hYilla~~D-VEaNy~vV~AyQyTsmtSi~lLDcwai 115 (336)
T KOG2766|consen 42 RKGINAPTSQTFLNYVLLALVYGPIMLFRR-----KYIKAKWRHYILLAFVD-VEANYFVVKAYQYTSMTSIMLLDCWAI 115 (336)
T ss_pred hccCCCccHHHHHHHHHHHHHHhhHHHhhh-----HHHHHHHHHhhheeEEe-ecccEEEeeehhhcchHHHHHHHHhhh
Confidence 44455 888999999999999998887633 23345577788889888 677777889999999999999998888
Q ss_pred HHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHHHHHHHH
Q 019311 89 AITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAG 168 (343)
Q Consensus 89 ~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a 168 (343)
..+.+++|+++|.|.++.+ +.|+++|+.|+.+++..+-. ..+..+..+..+|+.+.+++
T Consensus 116 p~v~~lsw~fLktrYrlmk------i~gV~iCi~GvvmvV~sDV~---------------agd~aggsnp~~GD~lvi~G 174 (336)
T KOG2766|consen 116 PCVLVLSWFFLKTRYRLMK------ISGVVICIVGVVMVVFSDVH---------------AGDRAGGSNPVKGDFLVIAG 174 (336)
T ss_pred HHHHHHHHHHHHHHHhhhe------eeeEEeEecceEEEEEeeec---------------cccccCCCCCccCcEEEEec
Confidence 8889999999999999996 99999999999999854421 11123445677999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 019311 169 CFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIV 248 (343)
Q Consensus 169 ~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~a 248 (343)
+-+||..++..+.+.|+.+ ...++.+..++++++..+. ++.+. ......+.+......+. ..++.++-|.+...-
T Consensus 175 ATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~~--~~~~tl~w~~~i~~yl~-f~L~MFllYsl~pil 249 (336)
T KOG2766|consen 175 ATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFER--HHVSTLHWDSAIFLYLR-FALTMFLLYSLAPIL 249 (336)
T ss_pred ceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-Hhhhc--cceeeEeehHHHHHHHH-HHHHHHHHHHhhHHh
Confidence 9999999999999999876 6888888889999988888 44443 12222222222222222 444677777888888
Q ss_pred hccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCc
Q 019311 249 MKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 249 ~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~ 303 (343)
++..+++...+-..+.-.++.++ ..||-+.+|...+..+.+..|.+++..+.+
T Consensus 250 ~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~ 302 (336)
T KOG2766|consen 250 IKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREK 302 (336)
T ss_pred eecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecccc
Confidence 99999999999999999999998 567778999999999999999999855443
No 26
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.63 E-value=5.3e-13 Score=117.15 Aligned_cols=272 Identities=15% Similarity=0.182 Sum_probs=195.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhccC---C-CCCC------CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 019311 13 MSPYVLVVYRHAAATIAMAPFAVILDKK---I-RPKM------TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAA 82 (343)
Q Consensus 13 ~~p~~~~~~r~~~~~~~~~~~~~~~~~~---~-~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~ 82 (343)
+.|.+.+++--.+-.++.....+...|+ + ...+ .+++.+++.+.+++. ++.+.+.|.++.+.+++..++
T Consensus 45 f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~iY-alqNnl~yval~~ldaatyqV 123 (345)
T KOG2234|consen 45 FLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALIY-ALQNNLQYVALSNLDAATYQV 123 (345)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHHH-HHhhhHHHHHHhcCCchhhhh
Confidence 6688888888877777777666654322 1 1111 344567777777777 888889999999999999999
Q ss_pred HhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHH
Q 019311 83 MYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGA 162 (343)
Q Consensus 83 i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 162 (343)
...+..+.|+++.++++++|++++| |.++++.++|+.++.+...+. ..+.+.....+...|.
T Consensus 124 t~qlKI~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~~vQ~~~~~~------------~~a~~~~~~~n~~~G~ 185 (345)
T KOG2234|consen 124 TYQLKILTTAIFSVLILRRKLSRLQ------WMALVLLFAGVALVQLPSLSP------------TGAKSESSAQNPFLGL 185 (345)
T ss_pred hhhHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhccCCCC------------CCccCCCcccchhhhH
Confidence 9999999999999999999999998 999999999999998433211 0111123455678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHH-HHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHH
Q 019311 163 LMITAGCFSWSFFIILQAITLKAYPAELSLTAWI-CFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT 241 (343)
Q Consensus 163 ~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 241 (343)
...+.++++.++-.+..++.+|+...+..+.-.+ .+++.++.+...+..+. +.-.|... -..|-...+..++..+.+
T Consensus 186 ~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~-~~i~~~gf-f~G~s~~vw~vVl~~a~g 263 (345)
T KOG2234|consen 186 VAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDG-EAINEYGF-FYGYSSIVWLVVLLNAVG 263 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccc-cccccCCc-cccccHHHHHHHHHHhcc
Confidence 9999999999999999999998765444433333 44444444444444433 21111110 012222233333345555
Q ss_pred HHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCccC
Q 019311 242 YYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 305 (343)
Q Consensus 242 ~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~~ 305 (343)
-.+....++|.+...=+....+..+++.+.++.+++-+++....+|..+++.++.++...+.++
T Consensus 264 GLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 264 GLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 5556666788888777778889999999999999999999999999999999999998555444
No 27
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=5.6e-13 Score=115.31 Aligned_cols=277 Identities=13% Similarity=0.102 Sum_probs=209.1
Q ss_pred CcchhhhhhhCCCChhHHHH--HHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 019311 1 MDVLCKAALNKGMSPYVLVV--YRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTAT 78 (343)
Q Consensus 1 ~~~~~k~~~~~~~~p~~~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~ 78 (343)
|-+.+|.++...--|..+.. ++.+.+.+.+...-.. +--+.++++++..++++...++. .+....-..+++|.+..
T Consensus 27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf-~~~i~t~~~slk~lnVp 104 (314)
T KOG1444|consen 27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLF-VGMLFTGSKSLKYLNVP 104 (314)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHH-HHHHHHccccccccCch
Confidence 34678888755333555555 7777766665544322 22335556788888888888777 66777777999999999
Q ss_pred HHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccch
Q 019311 79 FAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNS 158 (343)
Q Consensus 79 ~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (343)
..+++.+..|+++++...+++|.+++... |.++....+|...... .+....
T Consensus 105 m~tv~kn~tii~~ai~E~lf~~~~~~~~v------~~Sv~~m~~~s~~~~~-----------------------~d~sf~ 155 (314)
T KOG1444|consen 105 MFTVFKNLTIILTAIGEVLFFGKRPSNKV------WASVFAMIIGSVAAAF-----------------------TDLSFN 155 (314)
T ss_pred HHHHHhhchHHHHHHhHHhhcCcCchhhH------HHHHHHHHHHHHhhcc-----------------------ccceec
Confidence 99999999999999999999999999887 9999988888877762 223344
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHHccCCcccee---ecchhhHHHHHHHH
Q 019311 159 IKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWA---IHWDTKLVASVYSG 234 (343)
Q Consensus 159 ~~G~~~~l~a~~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~ 234 (343)
..|..+++...++-+.+.+..|+..+..+ +.+.++++..+.+...+....++.+..+..... ......+..+...+
T Consensus 156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc 235 (314)
T KOG1444|consen 156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC 235 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence 56999999999999999999998777544 457788999999998888888766542200111 12223455666666
Q ss_pred HHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCccCCCCC
Q 019311 235 IICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKSP 309 (343)
Q Consensus 235 ~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~~~~~~ 309 (343)
++ ++.-.++-..+.+..++...++++......+.+-..++.+++.++...+|..+-++|.+++.+.+.++++.+
T Consensus 236 v~-gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444|consen 236 VM-GFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred HH-HHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence 66 444445556899999999999999888888888888888889999999999999999999998776555544
No 28
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.59 E-value=5.3e-14 Score=104.57 Aligned_cols=136 Identities=17% Similarity=0.160 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHH
Q 019311 161 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 240 (343)
Q Consensus 161 G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (343)
..+++++++++++...++.|-..++.+ |..-+..+.+...+.+....+....++. -...++..|..++..|+ .+++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~--~~~~~~k~~lflilSGl-a~gl 79 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQA--GGEIGPKSWLFLILSGL-AGGL 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceec--ccccCcceehhhhHHHH-HHHH
Confidence 467999999999999999999888764 6777888888877777777765543111 11124557888888886 6999
Q ss_pred HHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhc
Q 019311 241 TYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 300 (343)
Q Consensus 241 ~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~ 300 (343)
+..+|++|++..+++++.++--++|+++++++++++||++|..+|+|+.+|.+|.++..+
T Consensus 80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999999999999999999999999999887654
No 29
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.48 E-value=1.2e-13 Score=102.77 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=106.0
Q ss_pred chhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 019311 3 VLCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKIRP-KMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAA 81 (343)
Q Consensus 3 ~~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ 81 (343)
++.|.. -++++|...++.|-....++++.+....++.+.+ ..++|.|..+.+.|+.+ ++++.+||.|++...++..+
T Consensus 20 iF~KIG-l~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-glswl~Yf~ALk~G~as~Vv 97 (140)
T COG2510 20 IFAKIG-LEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLSWLLYFRALKKGKASRVV 97 (140)
T ss_pred HHHHHh-ccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHHHHHHHHHHhcCCcceEE
Confidence 567899 5779999999999999999999888876655433 24678899999999887 99999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhhe
Q 019311 82 AMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 128 (343)
Q Consensus 82 ~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~ 128 (343)
.+..++|+++++++++++|||++..+ |+|+++..+|++++.
T Consensus 98 Pldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs 138 (140)
T COG2510 98 PLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS 138 (140)
T ss_pred EcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence 99999999999999999999999998 999999999998875
No 30
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.48 E-value=1.6e-13 Score=106.69 Aligned_cols=125 Identities=26% Similarity=0.411 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 019311 170 FSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVM 249 (343)
Q Consensus 170 ~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~a~ 249 (343)
++||.+.+..|+..++.+ +....++++..+.+ .++.....+. .. ....+...+...++.+++++.+++.++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 75 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGR-KP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYAL 75 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcc-cc--ccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence 478999999999999865 79999999999988 6666665554 21 2223445677788888887899999999999
Q ss_pred ccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhh
Q 019311 250 KDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 299 (343)
Q Consensus 250 ~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~ 299 (343)
++.+++.++.+.+++|+++.++++++++|++++.+++|+++++.|+++..
T Consensus 76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764
No 31
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.47 E-value=2.6e-13 Score=105.52 Aligned_cols=119 Identities=24% Similarity=0.454 Sum_probs=104.6
Q ss_pred cchhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 019311 2 DVLCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAA 81 (343)
Q Consensus 2 ~~~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ 81 (343)
.++.|.. .+++||...+++|+..+.+ ++++..+.+++...+.+++++...+..|.+...+++.+++.++++.+++.++
T Consensus 7 ~~~~k~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 84 (126)
T PF00892_consen 7 SVFSKKL-LKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVS 84 (126)
T ss_pred HHHHHHH-hccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHH
Confidence 4677888 4559999999999999998 6666666555545666788888899999886699999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhhe
Q 019311 82 AMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 128 (343)
Q Consensus 82 ~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~ 128 (343)
++.++.|+++.+++++++||++++++ ++|++++++|+.++.
T Consensus 85 ~~~~~~pv~~~i~~~~~~~e~~~~~~------~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 85 ILQYLSPVFAAILGWLFLGERPSWRQ------IIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999997 999999999998864
No 32
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.42 E-value=1e-12 Score=107.20 Aligned_cols=279 Identities=12% Similarity=0.087 Sum_probs=199.4
Q ss_pred chhhhhhhC-CCC-hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 019311 3 VLCKAALNK-GMS-PYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFA 80 (343)
Q Consensus 3 ~~~k~~~~~-~~~-p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~ 80 (343)
+-+|..++. |++ -+.+++++...+.+.++.+-+.+--+.+ ..+.|.|. ..+.+. ..-.+.--.+++|.+....
T Consensus 23 ltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR-~t~aK~Wf---piSfLL-v~MIyt~SKsLqyL~vpiY 97 (309)
T COG5070 23 LTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR-LTKAKKWF---PISFLL-VVMIYTSSKSLQYLAVPIY 97 (309)
T ss_pred HhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee-hhhhhhhc---CHHHHH-HHHHHhcccceeeeeeeHH
Confidence 345555422 333 4566677776666665544333211111 12233343 233332 2222334578999999999
Q ss_pred HHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhH
Q 019311 81 AAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIK 160 (343)
Q Consensus 81 ~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (343)
++..++..+.++....+++|.|++... ..+.++.+..-....+.+.+.. .-.....+.
T Consensus 98 TiFKNltII~iAygEvl~Fgg~vtsl~------l~SFilMvlSS~va~w~D~q~~----------------~~~~~~lN~ 155 (309)
T COG5070 98 TIFKNLTIILIAYGEVLFFGGRVTSLE------LLSFILMVLSSVVATWGDQQAS----------------AFKAQILNP 155 (309)
T ss_pred HHhccceeehhHhhHHHHhcCccchhh------HHHHHHHHHHHHHhccchhhHH----------------HHHhcccCC
Confidence 999999999999999999999999997 8888888888777776543211 112235567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHHccCCccceeec-chhhHHHHHHHHHHHH
Q 019311 161 GALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWAIH-WDTKLVASVYSGIICS 238 (343)
Q Consensus 161 G~~~~l~a~~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 238 (343)
|.+|+..-++.-+.+...+|+-.+-.. .....+++..+.+..+++.+.++.|.+...+.... +.....++...|+. +
T Consensus 156 GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~-s 234 (309)
T COG5070 156 GYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLC-S 234 (309)
T ss_pred ceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHH-H
Confidence 999999999999999999888666432 24778999999999999999998887555433222 22344566666665 4
Q ss_pred HHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCccCCCCC
Q 019311 239 GLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKSP 309 (343)
Q Consensus 239 ~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~~~~~~ 309 (343)
+.-.++-.+.++.++.+..+++..++..-..+-|.++++|+.+...+....+-.....++...+.++++++
T Consensus 235 vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q 305 (309)
T COG5070 235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQ 305 (309)
T ss_pred hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455567899999999999999999999999999999999999999999999998888887766555444
No 33
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.39 E-value=1.9e-11 Score=103.16 Aligned_cols=264 Identities=16% Similarity=0.178 Sum_probs=186.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCCCCC-------------CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 019311 15 PYVLVVYRHAAATIAMAPFAVILDKKIRPKM-------------TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAA 81 (343)
Q Consensus 15 p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ 81 (343)
|+..+..-++.-+++++.+.+++.|...+.. +.+. ...+.-.++- ..+..+.|.++.+++++..+
T Consensus 39 pvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~lfl~Pal~D-i~gsslm~vgL~lTsASsfQ 116 (372)
T KOG3912|consen 39 PVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-VLFLPPALCD-IAGSSLMYVGLNLTSASSFQ 116 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc-ceecChHHHH-HhhhHHHHHHHHHhhHHHHH
Confidence 6666666566666777777777654332211 1111 1233466666 67788899999999999999
Q ss_pred HHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHH
Q 019311 82 AMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKG 161 (343)
Q Consensus 82 ~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 161 (343)
++.....+|+.+++.-+++++++.++ |+|+....+|+.++...+--. ..+...+-+....|
T Consensus 117 MlRGaviIFvglfst~~Ln~ti~~~q------Wl~i~fv~lGlviVg~~d~~~-------------~~~p~~d~s~iitG 177 (372)
T KOG3912|consen 117 MLRGAVIIFVGLFSTMFLNRTITGRQ------WLGILFVSLGLVIVGSLDVHL-------------VTDPYTDYSSIITG 177 (372)
T ss_pred HhhcchhhhhHHHHHHHHhcccchhh------HHHHHHHHhhhheeeeeeccc-------------ccCCccccccchhh
Confidence 99999999999999999999999997 999999999999987543110 00111223456789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHHccC-Cccceee------cchhhHH-----
Q 019311 162 ALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERG-KASIWAI------HWDTKLV----- 228 (343)
Q Consensus 162 ~~~~l~a~~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~------~~~~~~~----- 228 (343)
+++.+++-+.-|...++-+|.+++.. +|.....|..+++.+++..++.....- ....+.. .+..+.+
T Consensus 178 dllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e 257 (372)
T KOG3912|consen 178 DLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQE 257 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcC
Confidence 99999999999999999999888775 689999999988876665555433210 0000100 0110111
Q ss_pred -HHHHHHHHHHHHHHHHHHH----hhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhh
Q 019311 229 -ASVYSGIICSGLTYYIQGI----VMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 299 (343)
Q Consensus 229 -~l~~~~~~~~~~~~~l~~~----a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~ 299 (343)
..++..+.+..++..+++. -.++.++++-.++-.+...+-.+++.....|.++..|+.|.++.+.|++++.
T Consensus 258 ~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 258 SPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred CchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222233333334333333 3566788888889999999999999999999999999999999999999986
No 34
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.39 E-value=4.2e-12 Score=106.92 Aligned_cols=240 Identities=14% Similarity=0.131 Sum_probs=166.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHH
Q 019311 42 RPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYT-TATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLAT 120 (343)
Q Consensus 42 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~-~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~ 120 (343)
+++++.|++......= ...+.+-++++++- +...=.++.+-.++.++++++++.|+|.+.+| +.++.+.
T Consensus 59 k~kiplk~Y~i~V~mF----F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Q------y~Sv~~i 128 (330)
T KOG1583|consen 59 KPKIPLKDYAITVAMF----FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQ------YSSVLMI 128 (330)
T ss_pred CCCCchhhhheehhee----eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhh------hhhHHhh
Confidence 4556666555443322 44566667888874 44444555588999999999999999999998 9999999
Q ss_pred HhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chhHHHHHHHHH
Q 019311 121 VAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFF 199 (343)
Q Consensus 121 ~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~ 199 (343)
.+|+++.++.+.++... ...+. ++++.......+..|+.+...+-+.-|...+.++...++++ ++-..+++....
T Consensus 129 TiGiiIcTl~s~~d~~~--~~~~l--~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~L 204 (330)
T KOG1583|consen 129 TIGIIICTLFSSKDGRS--KLSGL--DSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFL 204 (330)
T ss_pred hhhheeEEeecCcchhh--hhccc--ccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHh
Confidence 99999999776543211 00011 12222344456778999999999999999999999888886 566777777666
Q ss_pred HHHHHHHHHHHHccC---------Ccc-----ceeecchhhHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeechhHHH
Q 019311 200 GTVEGTLAALIMERG---------KAS-----IWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCM 265 (343)
Q Consensus 200 ~~i~~~~~~~~~~~~---------~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~p 265 (343)
+... .++.... ..+ .....-+..|..++.-.+ ..-.|.-..+.-..+.++.+++++..++.
T Consensus 205 sLP~----Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L-~Qy~CikgVy~L~te~~sLTVTlvltlRK 279 (330)
T KOG1583|consen 205 SLPL----FLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVL-TQYFCIKGVYILTTETSSLTVTLVLTLRK 279 (330)
T ss_pred ccch----HHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHH-HHHHHHHhhhhhhceecceEEEEeeeHHH
Confidence 5543 3332220 001 111112224444444333 34444444555667788999999999999
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhc
Q 019311 266 VIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 300 (343)
Q Consensus 266 v~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~ 300 (343)
.++.+++.+.|+++++++.|+|.++++.|.+++..
T Consensus 280 FvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 280 FVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred HHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888864
No 35
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.35 E-value=4.6e-10 Score=96.78 Aligned_cols=251 Identities=15% Similarity=0.143 Sum_probs=175.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh-chhHHH
Q 019311 14 SPYVLVVYRHAAATIAMAPFAVILDKKIRPKMT--LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMY-NILPAI 90 (343)
Q Consensus 14 ~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~p~~ 90 (343)
+|.+-.+---..+.++-+ ......+ +..+ .+.+...++.|++= .+.+.+.+.++++...+.+..+. .++-+.
T Consensus 11 ~~~~Q~lG~t~Gali~al-v~~~~~~---p~~~~~~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg 85 (269)
T PF06800_consen 11 KPANQILGTTIGALIFAL-VVFLFRQ---PAFSMSGTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVG 85 (269)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHhC---CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHH
Confidence 455554443333333333 3333233 3343 37788888888887 99999999999999999999999 888888
Q ss_pred HHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHH
Q 019311 91 TFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCF 170 (343)
Q Consensus 91 ~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~ 170 (343)
+.+++.++++|.-+..++. .=..++++.++|+.+....++++ +...+..+...|....+++.+
T Consensus 86 ~sl~gv~~fgEW~~~~~~~--~G~~Al~liiiGv~lts~~~~~~---------------~~~~~~~~~~kgi~~Ll~sti 148 (269)
T PF06800_consen 86 TSLIGVLFFGEWTTTTQKI--IGFLALVLIIIGVILTSYQDKKS---------------DKSSSKSNMKKGILALLISTI 148 (269)
T ss_pred HHHHHHhhcCCCCCcchHH--HHHHHHHHHHHHHHHhccccccc---------------cccccccchhhHHHHHHHHHH
Confidence 9999999999998877610 01236778888888887544321 001123456789999999999
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 019311 171 SWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMK 250 (343)
Q Consensus 171 ~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~a~~ 250 (343)
.|..|.+..|.. + . ++.....-+.+...+....+....+. .. ..... +.-+..|++ -.++..++..+.+
T Consensus 149 gy~~Y~~~~~~~-~-~-~~~~~~lPqaiGm~i~a~i~~~~~~~----~~--~~k~~-~~nil~G~~-w~ignl~~~is~~ 217 (269)
T PF06800_consen 149 GYWIYSVIPKAF-H-V-SGWSAFLPQAIGMLIGAFIFNLFSKK----PF--FEKKS-WKNILTGLI-WGIGNLFYLISAQ 217 (269)
T ss_pred HHHHHHHHHHhc-C-C-ChhHhHHHHHHHHHHHHHHHhhcccc----cc--cccch-HHhhHHHHH-HHHHHHHHHHhHH
Confidence 999999986662 2 2 46666666555554444444433211 11 11212 333455664 6778888999999
Q ss_pred cCCceeeeechhHHHHHHHHHHHHHhccccchh----hHHHHHHHHHhhhh
Q 019311 251 DRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLG----RIIGAIIIIGGLYL 297 (343)
Q Consensus 251 ~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~----~~iG~~li~~G~~l 297 (343)
+.+.+..=.+.-+.++++.+.+.+++||+=+.. .++|.+++++|.++
T Consensus 218 ~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 218 KNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999986655 56788888888764
No 36
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.32 E-value=6.4e-12 Score=95.89 Aligned_cols=105 Identities=18% Similarity=0.329 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhchhHHHHHHHHHH
Q 019311 20 VYRHAAATIAMAPFAVILDKKI--RPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWI 97 (343)
Q Consensus 20 ~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~ 97 (343)
.+|+..+.+++..+...+++.+ .+..+++.+.+++..|.++...++.++++|+++.+ +.++++.++.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 5799999999988888754432 12223455677788888885699999999999999 58889999999999999999
Q ss_pred HhhccccccccccchhhHHHHHHHhhhhhheeec
Q 019311 98 IRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIK 131 (343)
Q Consensus 98 ~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~ 131 (343)
++|||+++++ +++++++++|+.++...+
T Consensus 81 ~~~er~~~~~------~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 81 FFKERLSPRR------WLAILLILIGVILIAWSD 108 (113)
T ss_pred HhcCCCCHHH------HHHHHHHHHHHHHHhhhh
Confidence 9999999997 999999999999998543
No 37
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=8e-12 Score=105.11 Aligned_cols=277 Identities=14% Similarity=0.109 Sum_probs=195.4
Q ss_pred hhhhhhhC---CCC-hhHHHHHHHHHHHHHHHHHHHHhccCC----CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019311 4 LCKAALNK---GMS-PYVLVVYRHAAATIAMAPFAVILDKKI----RP--KMTLAILTKLLLLGLLEPVIDQNLYFIGMK 73 (343)
Q Consensus 4 ~~k~~~~~---~~~-p~~~~~~r~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~al~ 73 (343)
.+|.+++. ..+ |..+.+...+....+.+.+.....+-. .+ +++.+..+..+.+.+.. .+...+-+.+++
T Consensus 46 ~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL~ 124 (347)
T KOG1442|consen 46 LNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCLK 124 (347)
T ss_pred hHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceehh
Confidence 45555432 233 788888888777776666555432211 11 23444444555555443 333444568999
Q ss_pred ccchhHHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCC
Q 019311 74 YTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGT 153 (343)
Q Consensus 74 ~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (343)
|++.+...+=.++..+|++++.++++|+|-+..- ..++++++.|-.+-. +.+ +.
T Consensus 125 yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~------~~~C~lIi~GF~lGv--dqE------------------~~ 178 (347)
T KOG1442|consen 125 YVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFA------LGCCLLIILGFGLGV--DQE------------------GS 178 (347)
T ss_pred hcceEEEEeccchhhhHHHHhHHhhccccccccc------ceeehhheehheecc--ccc------------------cc
Confidence 9999999999999999999999999999999986 777777777766544 111 13
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHHHHHccCCcccee---ecchhhHHH
Q 019311 154 TTHNSIKGALMITAGCFSWSFFIILQAITLKAYPA-ELSLTAWICFFGTVEGTLAALIMERGKASIWA---IHWDTKLVA 229 (343)
Q Consensus 154 ~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 229 (343)
.+.-.+.|.++++.++++-|+..+..|+......+ -+.+++++.+.+.++.+|...+.+. -.+.+. ......|..
T Consensus 179 ~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge-~~~v~~~~~l~a~~Fw~~ 257 (347)
T KOG1442|consen 179 TGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGE-FQAVVGFPHLPAIKFWIL 257 (347)
T ss_pred cCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcch-HHHHcCcccchHHHHHHH
Confidence 34566799999999999999999998876655443 4788889999999999998876543 111121 223334544
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCccCCCCC
Q 019311 230 SVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKSP 309 (343)
Q Consensus 230 l~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~~~~~~ 309 (343)
+...|++ ++.-.+.-..=+|-++|.+-.+-....-..-.+++..+++|.-+..-|-|-.++++|...+.+.+.++.+++
T Consensus 258 mtLsglf-gF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~ 336 (347)
T KOG1442|consen 258 MTLSGLF-GFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA 336 (347)
T ss_pred HHHHHHH-HHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence 5555554 333333334457889999999999999999999999999999999999999999999999998776555443
No 38
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.26 E-value=5.1e-11 Score=100.14 Aligned_cols=229 Identities=14% Similarity=0.156 Sum_probs=177.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhh
Q 019311 44 KMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAG 123 (343)
Q Consensus 44 ~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~G 123 (343)
..+||. +..++.+. .....+.+-++.|++-....+...+.-+-+++.+.++-+.|.++.+ +++..+..+|
T Consensus 103 ~iP~rt---Y~~la~~t-~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d------~~aA~lm~lG 172 (367)
T KOG1582|consen 103 VIPWRT---YVILAFLT-VGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHD------YIAAMLMSLG 172 (367)
T ss_pred ecchhH---hhhhHhhh-hhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHH------HHHHHHHHHH
Confidence 345444 34444444 5566677789999998888888888888888899999999999998 9999999999
Q ss_pred hhhheeecCcccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHH
Q 019311 124 AMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTV 202 (343)
Q Consensus 124 v~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~i 202 (343)
.++.++.+. ...++.+..|..+.-.+-++-|.-..++++..+..+ +...+.++....+.+
T Consensus 173 li~FTLADs-------------------~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~v 233 (367)
T KOG1582|consen 173 LIWFTLADS-------------------QTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFV 233 (367)
T ss_pred HHhhhhccc-------------------ccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHH
Confidence 999997665 244556778999999999999999999999998876 346677778888888
Q ss_pred HHHHHHHHHccCCccceee---cchhhHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccc
Q 019311 203 EGTLAALIMERGKASIWAI---HWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQ 279 (343)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~ 279 (343)
.++..+..... -.+.|+. ++.......++.+. .+.++......-++..++..++.+......+++++++++|..+
T Consensus 234 flf~~mvlTge-~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKP 311 (367)
T KOG1582|consen 234 FLFAPMVLTGE-LFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKP 311 (367)
T ss_pred HHHHHHHhccc-chhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCc
Confidence 87777765543 3334432 12223333334344 3566666666678889999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhhhhhhccCc
Q 019311 280 MYLGRIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 280 ~~~~~~iG~~li~~G~~l~~~~~~ 303 (343)
++.+..-|..+++.|+++-.+.++
T Consensus 312 fT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 312 FTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred hHHHHhhhhHHHHHHHHhhcccCC
Confidence 999999999999999999887663
No 39
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.25 E-value=9.5e-11 Score=94.02 Aligned_cols=211 Identities=11% Similarity=0.107 Sum_probs=154.8
Q ss_pred HHHHHHHHHhhcccchhHHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCccccccccc
Q 019311 62 VIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTK 141 (343)
Q Consensus 62 ~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~ 141 (343)
.+.++.|..+++..+++.++.+..+...|+.+++++++|+|+.... +++.++++.|+.++...+.
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~k------IlaailAI~GiVmiay~DN--------- 128 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFK------ILAAILAIGGIVMIAYADN--------- 128 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhh------HHHHHHHhCcEEEEEeccc---------
Confidence 5678899999999999999999999999999999999999999996 9999999999999884432
Q ss_pred CCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHH----HHHHHHHHHHccCCcc
Q 019311 142 GAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGT----VEGTLAALIMERGKAS 217 (343)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~ 217 (343)
...+.+.|..+++.+++..|.|-+..|+......- -....++...++ +...|...+.-. ..+
T Consensus 129 ------------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~-Gdaa~FmS~LGF~NL~~~~~~~lIL~~T-~VE 194 (290)
T KOG4314|consen 129 ------------EHADEIIGIACAVGSAFMAALYKVLFKMFIGNANF-GDAAHFMSCLGFFNLCFISFPALILAFT-GVE 194 (290)
T ss_pred ------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHHHHHHHHHhhhHHHHHHh-chH
Confidence 44577899999999999999999999998876531 111111111111 111111111111 333
Q ss_pred ceeecchhhHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhh
Q 019311 218 IWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYL 297 (343)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l 297 (343)
+|+......|..+...+.+ +..-..+.+.++..+.|...++-+.....--...+.++-+-..+.....|.++|..|.++
T Consensus 195 ~~qsFA~~PWG~l~G~A~L-~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiL 273 (290)
T KOG4314|consen 195 HLQSFAAAPWGCLCGAAGL-SLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFIL 273 (290)
T ss_pred HHHHHhhCCchhhhhHHHH-HHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 4432222345555555554 344455667788888888888888888888889997766667899999999999999888
Q ss_pred hhccC
Q 019311 298 VVWGK 302 (343)
Q Consensus 298 ~~~~~ 302 (343)
.....
T Consensus 274 iiiP~ 278 (290)
T KOG4314|consen 274 IIIPE 278 (290)
T ss_pred eeccc
Confidence 87543
No 40
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.24 E-value=1.6e-10 Score=93.26 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHHHHHHHHccCCccceee-------c-chhh
Q 019311 161 GALMITAGCFSWSFFIILQAITLKAY------PAELSLTAWICFFGTVEGTLAALIMERGKASIWAI-------H-WDTK 226 (343)
Q Consensus 161 G~~~~l~a~~~~a~~~i~~k~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~-~~~~ 226 (343)
|.++++.+.++.+++.+..|+..++. .++..+..+....+.+.+.+..++.|.+....... . ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67899999999999999999988873 27899999999999999999998887632111110 0 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhc
Q 019311 227 LVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 300 (343)
Q Consensus 227 ~~~l~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~ 300 (343)
+..++..|++ ........+..+++++|...+++..++.++..++++++++|+++..+++|.++.++|.++++|
T Consensus 81 ~~~~~~~~~~-~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLL-AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 4455555554 677788888999999999999999999999999999999999999999999999999998764
No 41
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.23 E-value=1.6e-10 Score=103.75 Aligned_cols=139 Identities=13% Similarity=0.153 Sum_probs=110.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCcccee--ecchhhHHHHHHHH
Q 019311 157 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWA--IHWDTKLVASVYSG 234 (343)
Q Consensus 157 ~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~ 234 (343)
+..+|.+++++++++|+...+..|.. .+.+ |....++++.++.+++.++.....+ ..... ..+...+ .....+
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~ 79 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQ--WSYLKTLIQTPQKI-FMLAVS 79 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHcc--HHHHHHHHcCHHHH-HHHHHH
Confidence 55689999999999999999999874 5554 8999999999998877766543321 11100 0112222 333456
Q ss_pred HHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhc
Q 019311 235 IICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 300 (343)
Q Consensus 235 ~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~ 300 (343)
.++.+..+.++++++++.+++.++++.++.|+++.++++++++|+++..+++|+++.++|+.+...
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 666788899999999999999999999999999999999999999999999999999999887753
No 42
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.19 E-value=2.9e-10 Score=99.89 Aligned_cols=138 Identities=12% Similarity=0.167 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCc--cceeec-chhhHHHHHHHHHH
Q 019311 160 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKA--SIWAIH-WDTKLVASVYSGII 236 (343)
Q Consensus 160 ~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l~~~~~~ 236 (343)
+|..+.++++++|+...+..|. ..+. +|..+.+++++++++.+.++......... ..++.. ....+..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4888999999999999999998 4445 48999999999998887766544322000 111111 11123344555554
Q ss_pred HHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhc
Q 019311 237 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 300 (343)
Q Consensus 237 ~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~ 300 (343)
.+..+.++++++++++++.++.+.++.|+++.++++++++|+++.++++|+++.++|+.+...
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999887643
No 43
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.13 E-value=1.2e-09 Score=97.29 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHH
Q 019311 162 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT 241 (343)
Q Consensus 162 ~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 241 (343)
..+.++++++||...+..|+..++.+ +. ..+....+.+...|+...... ...++..+. .++.....+.+.....
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~ 76 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYLA--QVGWSRLPA-TFWLLLAISAVANMVY 76 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhcc--cCCCCCcch-hhHHHHHHHHHHHHHH
Confidence 46789999999999999998777643 32 355555666666666543211 122332222 3344444555568889
Q ss_pred HHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhc
Q 019311 242 YYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 300 (343)
Q Consensus 242 ~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~ 300 (343)
+.++++++++.+++.++++.+++|+++.+++++++||+++..+++|+++++.|+.+...
T Consensus 77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999988764
No 44
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.01 E-value=8.4e-09 Score=79.82 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHH
Q 019311 160 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG 239 (343)
Q Consensus 160 ~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (343)
.|.++.+++.++-+...++.|+..++.++ ...... . . ...... . .....+++|+++++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~-~~~~~~---~------------~p~~~i~lgl~~~~ 59 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----I-AALLAF---G------------LALRAVLLGLAGYA 59 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----H-HHHHHH---h------------ccHHHHHHHHHHHH
Confidence 36788999999999999999999888653 221111 0 0 000010 0 11235778888999
Q ss_pred HHHHHHHHhhccCCceeeeechhHHHHHHHHHHHH--HhccccchhhHHHHHHHHHhhhhhhccCc
Q 019311 240 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTI--ILAEQMYLGRIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 240 ~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~--~~~e~~~~~~~iG~~li~~G~~l~~~~~~ 303 (343)
+++.+|.+++++.+++.+.++....+++..+.++. ++||++++.+++|+++|++|+++..+.++
T Consensus 60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999998888888885 79999999999999999999999876444
No 45
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.00 E-value=7.9e-09 Score=94.57 Aligned_cols=141 Identities=12% Similarity=0.080 Sum_probs=115.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHH
Q 019311 158 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC 237 (343)
Q Consensus 158 ~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (343)
...-.+.+++.-++|+.+.++.|...+..-+|....++++.+++++++++.+..+. . ...+..+...+..+...|++.
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~-~-~~~~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNR-S-RSLPPLSVSILSKIGLLGFLG 88 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHH-h-cccCcchHHHHHHHHHHHHHH
Confidence 44566778888999999999999999876678999999999999999988875442 1 111211233566677777765
Q ss_pred HHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHH------hccccchhhHHHHHHHHHhhhhhhcc
Q 019311 238 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTII------LAEQMYLGRIIGAIIIIGGLYLVVWG 301 (343)
Q Consensus 238 ~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~------~~e~~~~~~~iG~~li~~G~~l~~~~ 301 (343)
...+.+++.++++++++.++++.++.|++++++++++ ++|+++..+++|.++.++|+.+....
T Consensus 89 -~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 89 -SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred -HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 5666789999999999999999999999999999999 69999999999999999999887653
No 46
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.99 E-value=1.6e-09 Score=93.11 Aligned_cols=213 Identities=13% Similarity=0.054 Sum_probs=128.1
Q ss_pred hhHHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccc-----cccCCCCCCCCCC
Q 019311 77 ATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELF-----WTKGAENHGHGSS 151 (343)
Q Consensus 77 ~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~-----~~~~~~~~~~~~~ 151 (343)
........+..++++++..+.+.++|.+.. |+++.++...|+....+.+.+..... ....+.++ +.+.
T Consensus 4 vPa~~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~-~~~~ 76 (222)
T TIGR00803 4 VPIHIIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQ-SSAK 76 (222)
T ss_pred ccchHHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCC-CCcc
Confidence 344566678889999999998999998865 49999999998876554332210000 00000000 0000
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHHHHHHHccCCccceeecchhhHHHH
Q 019311 152 GTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWIC-FFGTVEGTLAALIMERGKASIWAIHWDTKLVAS 230 (343)
Q Consensus 152 ~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (343)
.....+...|..+.+.+.++-+...+.+++..|+.+.......... ..+.+.........+......+.... .+...
T Consensus 77 ~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 154 (222)
T TIGR00803 77 TLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFI--GYPTA 154 (222)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCccc--CCchH
Confidence 0111255678777888888888888888887665432211111111 22222111111111110001111000 01111
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhh
Q 019311 231 VYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLV 298 (343)
Q Consensus 231 ~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~ 298 (343)
.+.-++..+++..+....+++.++...+....++++++.+++++++||+++..+++|+.+++.|++++
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 11222346667778889999999999999999999999999999999999999999999999998753
No 47
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.96 E-value=9.1e-09 Score=90.55 Aligned_cols=114 Identities=23% Similarity=0.324 Sum_probs=94.0
Q ss_pred chhhhhhhCCCCh--hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 019311 3 VLCKAALNKGMSP--YVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFA 80 (343)
Q Consensus 3 ~~~k~~~~~~~~p--~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~ 80 (343)
+..|.. .++.+| .....+++.++.++++++.+...+. ...+++.+...+..++++...++.+++.++++.+++.+
T Consensus 145 ~~~k~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 221 (260)
T TIGR00950 145 VLYKRL-VKKEGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAA 221 (260)
T ss_pred HHHhHH-hhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 456777 344564 4555578999999888887764332 23356778788888888878999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhh
Q 019311 81 AAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM 125 (343)
Q Consensus 81 ~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~ 125 (343)
+++.++.|+++.++++++++|+++..+ ++|..+.+.|++
T Consensus 222 s~~~~~~pv~~~ll~~~~~~E~~~~~~------~~G~~li~~g~~ 260 (260)
T TIGR00950 222 SILALAEPLVALLLGLLILGETLSLPQ------LIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHhcC
Confidence 999999999999999999999999997 999999999864
No 48
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.93 E-value=3.2e-08 Score=88.21 Aligned_cols=224 Identities=15% Similarity=0.202 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeec
Q 019311 52 KLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIK 131 (343)
Q Consensus 52 ~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~ 131 (343)
+....|++...++..+-+.|+.+.|.+..+.+..+.-++.++++..++|||+++++ +.|+.+++.|..++....
T Consensus 51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIVIFA 124 (300)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeEEeC
Confidence 44566666667888888999999999999999999999999999999999999998 999999999998887543
Q ss_pred CcccccccccCCCCCCCCCCCCCc------cchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH---
Q 019311 132 GPILELFWTKGAENHGHGSSGTTT------HNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTV--- 202 (343)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i--- 202 (343)
.++. +..+.+. +........... .+...+.....+|..++. ...........++.
T Consensus 125 ~~~~-------------~~~t~~~l~~~~~~~~fl~y~~~~~-~~~~~L~~~~~~r~g~~~--i~vyi~i~sl~Gs~tvl 188 (300)
T PF05653_consen 125 PKEE-------------PIHTLDELIALLSQPGFLVYFILVL-VLILILIFFIKPRYGRRN--ILVYISICSLIGSFTVL 188 (300)
T ss_pred CCCC-------------CcCCHHHHHHHhcCcceehhHHHHH-HHHHHHHHhhcchhcccc--eEEEEEEeccccchhhh
Confidence 2210 0000000 000011111111 122222222222222211 11000000011110
Q ss_pred ----HHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeechhHHH-HHHHHHHHHHhc
Q 019311 203 ----EGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCM-VIVAIMSTIILA 277 (343)
Q Consensus 203 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~p-v~~~ll~~~~~~ 277 (343)
+...+....++ +.....+..|..++. .+.+........++|+++.+++.+.++.+.-= ..+++-|.++++
T Consensus 189 ~~K~i~~~i~~~~~g----~~~f~~~~~y~l~~~-~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~ 263 (300)
T PF05653_consen 189 SAKAISILIKLTFSG----DNQFTYPLTYLLLLV-LVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQ 263 (300)
T ss_pred HHHHHHHHHHHHhcC----chhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhc
Confidence 11111110111 111222334433333 34345666667788999999998888777654 455555667788
Q ss_pred cc--cch----hhHHHHHHHHHhhhhhhccC
Q 019311 278 EQ--MYL----GRIIGAIIIIGGLYLVVWGK 302 (343)
Q Consensus 278 e~--~~~----~~~iG~~li~~G~~l~~~~~ 302 (343)
|. .+. ....|..+++.|+++....+
T Consensus 264 e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 264 EFSRMTAWQIIGFLCGFLIIIIGVFLLSSSK 294 (300)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhheeeccC
Confidence 75 344 35677888888988886543
No 49
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.89 E-value=4.3e-08 Score=87.85 Aligned_cols=132 Identities=10% Similarity=0.065 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHH
Q 019311 162 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT 241 (343)
Q Consensus 162 ~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 241 (343)
....++..+.|+...+..|...+.. +|....++++..+.++++++...... .. .+..++......|.+.....
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~----~~--~~~~~~~~~~~~g~~~~~~~ 82 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGH----PL--PTLRQWLNAALIGLLLLAVG 82 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCC----CC--CcHHHHHHHHHHHHHHHHHH
Confidence 4556777999999999999887765 48999999999999888877653221 11 12335556667777655677
Q ss_pred HHHHHHhh-ccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhcc
Q 019311 242 YYIQGIVM-KDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 301 (343)
Q Consensus 242 ~~l~~~a~-~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~ 301 (343)
+.+++.+. ++.+++.++++.++.|+++.+++++ ++|+++..+++|..+.++|+.+....
T Consensus 83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 78888888 9999999999999999999999985 79999999999999999999887643
No 50
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.89 E-value=1e-08 Score=78.09 Aligned_cols=107 Identities=18% Similarity=0.309 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHH
Q 019311 195 WICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTI 274 (343)
Q Consensus 195 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~ 274 (343)
+++..+.+....+...... ..+.+.......+...+..|++....++.++.++.++.++ .++++..++|+++.+++++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGR-LRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHcc-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence 5566666666666654332 1111221122344555666776566899999999999995 8889999999999999999
Q ss_pred HhccccchhhHHHHHHHHHhhhhhhccCc
Q 019311 275 ILAEQMYLGRIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 275 ~~~e~~~~~~~iG~~li~~G~~l~~~~~~ 303 (343)
+++|+++..+++|++++++|+.+..+.+.
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999987543
No 51
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.87 E-value=5.4e-08 Score=87.27 Aligned_cols=130 Identities=12% Similarity=0.039 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHH
Q 019311 160 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG 239 (343)
Q Consensus 160 ~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (343)
.+.+++++++++|+...+..|...+..+ |....++++..+.+++.++.. . ...+.. .+.. ...+.+...
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~~---~---~~~~~~---~~~~-~~~~~l~~~ 72 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTVG---F---PRLRQF---PKRY-LLAGGLLFV 72 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHcc---c---cccccc---cHHH-HHHHhHHHH
Confidence 4577899999999999999999888876 899999999999888776531 1 111111 1112 222333334
Q ss_pred HHHHHHHHhh----ccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhc
Q 019311 240 LTYYIQGIVM----KDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 300 (343)
Q Consensus 240 ~~~~l~~~a~----~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~ 300 (343)
....+++.++ +..++..++++.++.|+++.++++++++|++++.+++|+++.++|+.+...
T Consensus 73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 4444455555 456777888999999999999999999999999999999999999988764
No 52
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.86 E-value=5.5e-08 Score=87.43 Aligned_cols=125 Identities=10% Similarity=0.105 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHHH
Q 019311 163 LMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTY 242 (343)
Q Consensus 163 ~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (343)
+++++++++|+...+..|...++.+ |....++++..+++...++.. . . .. .+..+...|++.....+
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~---~-~--~~------~~~~~~~~g~~~~~~~~ 73 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFVA---R-P--KV------PLNLLLGYGLTISFGQF 73 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhc---C-C--CC------chHHHHHHHHHHHHHHH
Confidence 5688899999999999999888765 899999999987766554431 1 1 11 11223333444344455
Q ss_pred HHHHHhhcc-CCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhc
Q 019311 243 YIQGIVMKD-RGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 300 (343)
Q Consensus 243 ~l~~~a~~~-~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~ 300 (343)
.+++.+.++ .+++.++++.++.|+++.++++++++|+++..+++|+++.++|+.+...
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 566778887 5778999999999999999999999999999999999999999988874
No 53
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.75 E-value=1.4e-07 Score=84.61 Aligned_cols=120 Identities=17% Similarity=0.171 Sum_probs=95.2
Q ss_pred cchhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 019311 2 DVLCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAA 81 (343)
Q Consensus 2 ~~~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ 81 (343)
.++.|.. .++.+|...... ..++.+++.++...... ....++..+...+..|++...+++.++++++++.+++.++
T Consensus 164 ~v~~r~~-~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as 239 (293)
T PRK10532 164 ILSGQRA-GAEHGPATVAIG-SLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFG 239 (293)
T ss_pred HHHHHHH-hccCCchHHHHH-HHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHH
Confidence 3456777 455778777554 45666666676654322 2223456666667888888899999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeec
Q 019311 82 AMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIK 131 (343)
Q Consensus 82 ~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~ 131 (343)
++.++.|+++.++++++++|+++..+ ++|..+.++|++......
T Consensus 240 ~~~~l~Pv~a~l~~~l~lgE~~~~~~------~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 240 TLMSMEPALAAVSGMIFLGETLTLIQ------WLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHhHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998 999999999999987443
No 54
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.74 E-value=4.9e-06 Score=74.95 Aligned_cols=243 Identities=14% Similarity=0.119 Sum_probs=152.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh-chhHHHHHHHHHHHhhccc---cccccccchhhHHHHHH
Q 019311 45 MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMY-NILPAITFLMAWIIRLENV---NLKSIRSLAKVIGTLAT 120 (343)
Q Consensus 45 ~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~p~~~~lla~~~~~e~~---~~~~~~~~~k~~~~~i~ 120 (343)
.+.+.+...++.|++= ...+..++.++++...+.+..+. .+.-+...++..++++|-. +..+ +..-.+|++++
T Consensus 68 ~~~~~~~~~~l~G~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~li 144 (345)
T PRK13499 68 FSGSTLLPVFLFGALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVA 144 (345)
T ss_pred cCHHHHHHHHHHHHHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHH
Confidence 4567778888888887 89999999999999999998888 8999999999999998754 2211 22237888999
Q ss_pred HhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHH-------HHHHHHHhhCCchhHHH
Q 019311 121 VAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFI-------ILQAITLKAYPAELSLT 193 (343)
Q Consensus 121 ~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~-------i~~k~~~~~~~~~~~~~ 193 (343)
++|+.+........+ +. ++.+..+..+..+|..+++++++.++.|. ...+...+..-++....
T Consensus 145 liGi~l~s~Ag~~k~-------~~---~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~ 214 (345)
T PRK13499 145 LIGVAIVGRAGQLKE-------RK---MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAA 214 (345)
T ss_pred HHHHHHHHHhhhhcc-------cc---cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHH
Confidence 999999885222110 00 00000223567799999999999999999 43333222111333333
Q ss_pred HHHHH---HH-HHHHHHHHHHHccCCcc--ce--eecchhhHHHH----HHHHHHHHHHHHHHHHHhhccCCceeeee--
Q 019311 194 AWICF---FG-TVEGTLAALIMERGKAS--IW--AIHWDTKLVAS----VYSGIICSGLTYYIQGIVMKDRGPVFVAA-- 259 (343)
Q Consensus 194 ~~~~~---~~-~i~~~~~~~~~~~~~~~--~~--~~~~~~~~~~l----~~~~~~~~~~~~~l~~~a~~~~~~~~~s~-- 259 (343)
.-+.. .+ .+....+.......+.. .. ...+...+..- ...|++ -.+++.++..+.++.+......
T Consensus 215 lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~-W~~~~~~y~~~~~~~g~~~~~~sw 293 (345)
T PRK13499 215 LPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVM-WYLQFFFYAMGHSKLGAQYDFVSW 293 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCccchHHH
Confidence 33332 22 22222222221110111 01 11111112222 333443 5677778888888876654444
Q ss_pred -ch-hHHHHHHHHHHHHHhccccc------hhhHHHHHHHHHhhhhhhccC
Q 019311 260 -FS-PLCMVIVAIMSTIILAEQMY------LGRIIGAIIIIGGLYLVVWGK 302 (343)
Q Consensus 260 -~~-~~~pv~~~ll~~~~~~e~~~------~~~~iG~~li~~G~~l~~~~~ 302 (343)
+. .+..+++.+++. +++|.=+ ...++|.+++++|..+....+
T Consensus 294 ~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~~ 343 (345)
T PRK13499 294 MLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLGN 343 (345)
T ss_pred HHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence 44 777899999998 5998655 557999999999998886653
No 55
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.74 E-value=3.4e-07 Score=84.02 Aligned_cols=136 Identities=17% Similarity=0.137 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHH
Q 019311 162 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT 241 (343)
Q Consensus 162 ~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 241 (343)
..+.+.-=.+...+++.+|...+..+-|+.++.+++.++.+...++.. ......+... .....+..++..|++ ....
T Consensus 51 ~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~llp~gl~-~~~~ 127 (350)
T PTZ00343 51 ALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWA-TGFRKIPRIK-SLKLFLKNFLPQGLC-HLFV 127 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCC-CHHHHHHHHHHHHHH-HHHH
Confidence 333333344445567788999988865899999999999876555432 2110111111 122356677777886 4555
Q ss_pred HHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhc
Q 019311 242 YYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 300 (343)
Q Consensus 242 ~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~ 300 (343)
+...+.++++.+++.++++..++|++++++++++++|+++..++.|++++++|+.+...
T Consensus 128 ~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 128 HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 77778999999999999999999999999999999999999999999999999998763
No 56
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.69 E-value=2.8e-07 Score=83.01 Aligned_cols=122 Identities=14% Similarity=0.127 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019311 173 SFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDR 252 (343)
Q Consensus 173 a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~a~~~~ 252 (343)
..+++.+|...+..+.|....++++..+.+...+... ........ .+..++..++..|++ .+..+.+.+.+++++
T Consensus 15 ~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~~ 89 (302)
T TIGR00817 15 VYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLK---ISSALLKLLLPVAIV-HTIGHVTSNVSLSKV 89 (302)
T ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCC---CCHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Confidence 3455678988887677899999999888766554421 11101111 234467777888887 678889999999999
Q ss_pred CceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhh
Q 019311 253 GPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 299 (343)
Q Consensus 253 ~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~ 299 (343)
+++..+++..+.|+++.++++++++|+++..+++|.+++++|+.+..
T Consensus 90 s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 90 AVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999997653
No 57
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.65 E-value=4.2e-07 Score=78.22 Aligned_cols=141 Identities=11% Similarity=0.188 Sum_probs=114.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCcccee-ecchhhHHHHHHHHH
Q 019311 157 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWA-IHWDTKLVASVYSGI 235 (343)
Q Consensus 157 ~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 235 (343)
+...|.++++.+-+.|+..-...|-+ +..+ +..+..++.+.+...+........+ ....+. ...+..+......++
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~-~~~~~~~~~~p~~~~~~~l~a~ 80 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQ-WRELKQLLKQPKTLLMLALTAL 80 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHhCcHHHHHHHHHHH
Confidence 45689999999999999998877764 5555 6899999999999888877776544 212222 234445666666666
Q ss_pred HHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhcc
Q 019311 236 ICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 301 (343)
Q Consensus 236 ~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~ 301 (343)
. ...-..++.+|.++-....++.-.+.+|.+.+++|.++++|+++..|++.+++..+|+....+.
T Consensus 81 l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 81 L-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred H-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 5 7888999999999999999999999999999999999999999999999999999999877653
No 58
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.60 E-value=3.6e-07 Score=68.99 Aligned_cols=68 Identities=19% Similarity=0.271 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhh
Q 019311 232 YSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 299 (343)
Q Consensus 232 ~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~ 299 (343)
..++++.+.++.++..++++.|.+.+-.+.++.++++.+++++++||++++.+++|++++++|+.+..
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 33446678899999999999999999999999999999999999999999999999999999998764
No 59
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.58 E-value=4.6e-07 Score=68.43 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhhe
Q 019311 53 LLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 128 (343)
Q Consensus 53 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~ 128 (343)
....+++.+.+++.++..+++..|.+.+..+.++.++++.+++++++|||++.++ ++|+.++++|+.++.
T Consensus 39 ~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~------~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 39 WLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRH------WCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence 3444446668899999999999999999999999999999999999999999997 999999999998875
No 60
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.47 E-value=4.6e-06 Score=74.30 Aligned_cols=142 Identities=14% Similarity=0.224 Sum_probs=104.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHH
Q 019311 158 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC 237 (343)
Q Consensus 158 ~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (343)
...+....+..++.|+......|...+...+.......+...+.+...+.... + ...... ....+......+.+.
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~--~~~~~~~~~~~~~~~ 79 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-E--PRGLRP--ALRPWLLLLLLALLG 79 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-h--cccccc--cccchHHHHHHHHHH
Confidence 45677888888899999999988877752334454455666666552222221 1 000111 111234555666667
Q ss_pred HHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHH-HHhccccchhhHHHHHHHHHhhhhhhccCcc
Q 019311 238 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMST-IILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 304 (343)
Q Consensus 238 ~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~-~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~ 304 (343)
....+.+++.++++.++..++.+.++.|+++.++++ ++++|+++..++.|..+.+.|+++..+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 899999999999999999999999999999999997 6669999999999999999999999875543
No 61
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=8.3e-07 Score=77.28 Aligned_cols=229 Identities=14% Similarity=0.189 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeec
Q 019311 52 KLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIK 131 (343)
Q Consensus 52 ~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~ 131 (343)
+....|++.+.++..+-|.|+.+.|++..+.+..++.+..++++..+++||++... .+|+.++++|..+++..
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~h- 137 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVIH- 137 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEEe-
Confidence 44556777778888888999999999999999999999999999999999999999 99999999999888843
Q ss_pred CcccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH-------
Q 019311 132 GPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEG------- 204 (343)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~------- 204 (343)
.|.++...+..+..+ --.+...+. ....+...++.=.+ ..+ +++. ...+..+..+.+.+-.
T Consensus 138 aP~e~~i~t~~el~~-----~~~~~~Fli-y~~~iil~~~il~~--~~~---p~~g-~tnilvyi~i~s~iGS~tV~svK 205 (335)
T KOG2922|consen 138 APKEQEIESVEEVWE-----LATEPGFLV-YVIIIILIVLILIF--FYA---PRYG-QTNILVYIGICSLIGSLTVMSVK 205 (335)
T ss_pred cCcccccccHHHHHH-----HhcCccHHH-HHHHHHHHHHHHhe--eec---cccc-ccceeehhhHhhhhcceeeeeHH
Confidence 321100000000000 000001111 11111111111111 111 1111 1112223333333211
Q ss_pred ---HHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeechhH-HHHHHHHHHHHHhcccc
Q 019311 205 ---TLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPL-CMVIVAIMSTIILAEQM 280 (343)
Q Consensus 205 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~-~pv~~~ll~~~~~~e~~ 280 (343)
..+-....+ ......+..|..++.... +...-..-.++|++..+++.++++.+. -..++++-+.++|+|--
T Consensus 206 alg~aiklt~~g----~~ql~~~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~ 280 (335)
T KOG2922|consen 206 ALGIAIKLTFSG----NNQLFYPLTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWS 280 (335)
T ss_pred HHHHHHHHHhcC----CcccccHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhc
Confidence 111111111 112223335555555444 344455556889999999988877765 45566677888888853
Q ss_pred c--h----hhHHHHHHHHHhhhhhhccCcc
Q 019311 281 Y--L----GRIIGAIIIIGGLYLVVWGKSK 304 (343)
Q Consensus 281 ~--~----~~~iG~~li~~G~~l~~~~~~~ 304 (343)
. . ....|...++.|+++....+.+
T Consensus 281 ~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~ 310 (335)
T KOG2922|consen 281 GQDALDIAGELCGFVTIFLGIFLLHRTKDM 310 (335)
T ss_pred CCcHHHHHHHHHhHHHhhheeeEeeeeccc
Confidence 3 2 2678888999999888554433
No 62
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.40 E-value=8.9e-06 Score=73.29 Aligned_cols=145 Identities=13% Similarity=0.035 Sum_probs=104.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHH
Q 019311 157 NSIKGALMITAGCFSWSFFIILQAITLKA-YPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGI 235 (343)
Q Consensus 157 ~~~~G~~~~l~a~~~~a~~~i~~k~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (343)
+.+.+.+++-.-+++-+...+.+..+.++ ...|...+++.+..-.++..+....-. ....+.......|+..+.+++
T Consensus 10 ~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~--~~~~~~~~~~~~~w~y~lla~ 87 (334)
T PF06027_consen 10 RFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRR--GFKKWLKVLKRPWWKYFLLAL 87 (334)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhcc--ccccchhhcchhHHHHHHHHH
Confidence 34455555555566666666666665555 224666666666665555555443322 222222222345666666777
Q ss_pred HHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCcc
Q 019311 236 ICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 304 (343)
Q Consensus 236 ~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~ 304 (343)
+ -..+.++...|.++++.+.++++.....+++.+++++++++++++.+++|+++.++|+.+.......
T Consensus 88 ~-Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 88 L-DVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred H-HHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 5 8899999999999999999999999999999999999999999999999999999999988776543
No 63
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.34 E-value=8.9e-06 Score=65.35 Aligned_cols=108 Identities=20% Similarity=0.327 Sum_probs=92.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhccCCCCC----C-------CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 019311 12 GMSPYVLVVYRHAAATIAMAPFAVILDKKIRPK----M-------TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFA 80 (343)
Q Consensus 12 ~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~ 80 (343)
+.++.++.......+.+++++.....++....+ . +.+.+...+..|++. ...+.+.+..++++++-..
T Consensus 32 ~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~ 110 (153)
T PF03151_consen 32 KLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLA-FLYNLSSFLLIKLTSPLTY 110 (153)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHH-HHHHHHHHHHhhhcChhHH
Confidence 689999999999999999999988766554111 0 224455667777777 8889999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhh
Q 019311 81 AAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV 126 (343)
Q Consensus 81 ~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~l 126 (343)
+++.....+.+.++++++++|+++..+ ++|+.++++|+.+
T Consensus 111 ~v~~~~K~~~~i~~s~~~f~~~~t~~~------~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 111 SVLGNVKRILVILLSVIFFGEPITPLQ------IIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHhhhcCCcCCHHH------HHHHHHHHHHHhe
Confidence 999999999999999999999999997 9999999999875
No 64
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.29 E-value=9.9e-06 Score=72.40 Aligned_cols=131 Identities=18% Similarity=0.169 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHH
Q 019311 161 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 240 (343)
Q Consensus 161 G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (343)
+.+++++++++|+...+..|+.. ..+ +.+.. ....+.++...+...... . .. .....+..-...|. .-.+
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~-~--~~--~~~~~~~~g~l~G~-~w~i 71 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVL-P--EF--WALSIFLVGLLSGA-FWAL 71 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhC-C--cc--cccHHHHHHHHHHH-HHHh
Confidence 56889999999999999988864 333 33332 344444444444333222 1 11 11223333333344 3788
Q ss_pred HHHHHHHhhccCCceeeeechh-HHHHHHHHHHHHHhccccchhh----HHHHHHHHHhhhhhhcc
Q 019311 241 TYYIQGIVMKDRGPVFVAAFSP-LCMVIVAIMSTIILAEQMYLGR----IIGAIIIIGGLYLVVWG 301 (343)
Q Consensus 241 ~~~l~~~a~~~~~~~~~s~~~~-~~pv~~~ll~~~~~~e~~~~~~----~iG~~li~~G~~l~~~~ 301 (343)
++.+++.+.++.+.+.+..+.+ ++++++.+++.+++||+.+..+ ++|.+++++|+++....
T Consensus 72 g~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 72 GQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred hhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 8999999999999999988888 9999999999999999999999 99999999998887554
No 65
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.27 E-value=4.1e-07 Score=76.91 Aligned_cols=137 Identities=12% Similarity=0.096 Sum_probs=102.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHH
Q 019311 157 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII 236 (343)
Q Consensus 157 ~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (343)
...+|..+..++ ..+....+..++..... |......++++-.++..|..++... +...++..-.+++.=|+.
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~~-----~v~gp~g~R~~LiLRg~m 106 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYMQ-----PVIGPEGKRKWLILRGFM 106 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEee-----eeecCCCcEEEEEeehhh
Confidence 456888898888 77888888888877763 5666666666655555554443222 111222222233334444
Q ss_pred HHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccC
Q 019311 237 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 302 (343)
Q Consensus 237 ~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~ 302 (343)
+..+..+.++++++.+.+.+.++....|+++.+++|++++|+.+....+|..+.+.|+++..+..
T Consensus 107 -G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 107 -GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred -hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 56677888999999999999999999999999999999999999999999999999999998653
No 66
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.16 E-value=1e-05 Score=61.45 Aligned_cols=69 Identities=17% Similarity=0.363 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHhhccCCceeeeec-hhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccC
Q 019311 234 GIICSGLTYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 302 (343)
Q Consensus 234 ~~~~~~~~~~l~~~a~~~~~~~~~s~~-~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~ 302 (343)
.+.+.+++++++..++++.+.+.+=.+ ..+..+.+.++++++++|++++.+++|+++|++|++......
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 444578899999999999998865444 578899999999999999999999999999999999886544
No 67
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.14 E-value=5.7e-07 Score=75.18 Aligned_cols=251 Identities=16% Similarity=0.158 Sum_probs=166.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh-chhHHHHH
Q 019311 14 SPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMY-NILPAITF 92 (343)
Q Consensus 14 ~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~p~~~~ 92 (343)
.|.+-+.- ..++++.+....++.. .|..+.+.+...++.|.+= ...+...+.|+++.+.+.+..+. .++-+-+.
T Consensus 27 ~p~qQ~lG-tT~GALifaiiv~~~~---~p~~T~~~~iv~~isG~~W-s~GQ~~Qfka~~~iGVSkamPiStG~QLVg~s 101 (288)
T COG4975 27 KPYQQTLG-TTLGALIFAIIVFLFV---SPELTLTIFIVGFISGAFW-SFGQANQFKAIQLIGVSKAMPISTGMQLVGTS 101 (288)
T ss_pred ChhHhhhh-ccHHHHHHHHHHheee---cCccchhhHHHHHHhhhHh-hhhhhhhhhheeeeeeeccccccchhhHhhce
Confidence 45554444 3344444444444332 3445667677777777776 88899999999999999999998 78899999
Q ss_pred HHHHHHhhccccccccccchhhH---HHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHHHHHHHHH
Q 019311 93 LMAWIIRLENVNLKSIRSLAKVI---GTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGC 169 (343)
Q Consensus 93 lla~~~~~e~~~~~~~~~~~k~~---~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~ 169 (343)
+++.+.++|..+..+ +++ ++++.++|+.+-...+.+ + ....+.++..+|....+.+.
T Consensus 102 L~gV~~f~EW~t~~~-----~IlG~iAliliviG~~lTs~~~~~-----------n----k~~~~~~n~kkgi~~L~iSt 161 (288)
T COG4975 102 LFGVFVFHEWTTPTQ-----IILGFIALILIVIGIYLTSKQDRN-----------N----KEEENPSNLKKGIVILLIST 161 (288)
T ss_pred eeeEEEEeccCcchh-----HHHHHHHHHHHHHhheEeeeeccc-----------c----ccccChHhhhhheeeeeeec
Confidence 999999999998876 333 345556666665533221 0 01123345668999999999
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 019311 170 FSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVM 249 (343)
Q Consensus 170 ~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~a~ 249 (343)
+.|-.|.+..+... . +-+....-+.....+..+.+... . .+ ...+. ..+.-..-|++ -+++...+..+.
T Consensus 162 ~GYv~yvvl~~~f~--v-~g~saiLPqAiGMv~~ali~~~~-~----~~-~~~~K-~t~~nii~G~~-Wa~GNl~ml~a~ 230 (288)
T COG4975 162 LGYVGYVVLFQLFD--V-DGLSAILPQAIGMVIGALILGFF-K----ME-KRFNK-YTWLNIIPGLI-WAIGNLFMLLAA 230 (288)
T ss_pred cceeeeEeeecccc--c-cchhhhhHHHHHHHHHHHHHhhc-c----cc-cchHH-HHHHHHhhHHH-HHhhHHHHHHhh
Confidence 99999998766543 2 22333333333322222223321 1 11 11122 33344455665 577888899999
Q ss_pred ccCCceeeeechhHHHHHHHHHHHHHhccccchh----hHHHHHHHHHhhhhhhc
Q 019311 250 KDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLG----RIIGAIIIIGGLYLVVW 300 (343)
Q Consensus 250 ~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~----~~iG~~li~~G~~l~~~ 300 (343)
++.+.++.=.+.-+..+++.+-+.++++|+=+.. .++|.+++++|..+...
T Consensus 231 ~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 231 QKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred hhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 9999999888899999999999999999987766 45788888888776643
No 68
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.14 E-value=4.6e-05 Score=68.63 Aligned_cols=131 Identities=15% Similarity=0.079 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHhhCC-c--hhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHHHHHHHH
Q 019311 171 SWSFFIILQAITLKAYP-A--ELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGI 247 (343)
Q Consensus 171 ~~a~~~i~~k~~~~~~~-~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 247 (343)
++..+.+.+++..++.. . |..+++.++....+...+....... ... +...+...+..+++ ..++..+.+.
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF---PKS---RKIPLKKYAILSFL-FFLASVLSNA 83 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc---cCC---CcChHHHHHHHHHH-HHHHHHHHHH
Confidence 33446677777776543 3 6788888888877776666553331 111 11233344455554 7778889999
Q ss_pred hhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCccCCCC
Q 019311 248 VMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKS 308 (343)
Q Consensus 248 a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~~~~~ 308 (343)
++++++.....+.....|+.+.++++++++++.+..++++++++.+|+.+....+.++.++
T Consensus 84 al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~ 144 (303)
T PF08449_consen 84 ALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSS 144 (303)
T ss_pred HHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccc
Confidence 9999999999999999999999999999999999999999999999999998766544443
No 69
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.10 E-value=1.9e-05 Score=61.20 Aligned_cols=71 Identities=21% Similarity=0.343 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHhchhHHHHHHHHHH--HhhccccccccccchhhHHHHHHHhhhhhhee
Q 019311 53 LLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWI--IRLENVNLKSIRSLAKVIGTLATVAGAMVMTL 129 (343)
Q Consensus 53 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~--~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~ 129 (343)
.+..|+..+.+++.++..+++..+.+.+..+.+..++++.+.++. ++||+++..+ ++|+.+.++|+.++..
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~------~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKK------TLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhcc
Confidence 577888888999999999999999999999999999888888885 8999999997 9999999999999873
No 70
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.98 E-value=2.7e-05 Score=58.45 Aligned_cols=68 Identities=19% Similarity=0.364 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhhccCCceee-eechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccC
Q 019311 235 IICSGLTYYIQGIVMKDRGPVFV-AAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 302 (343)
Q Consensus 235 ~~~~~~~~~l~~~a~~~~~~~~~-s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~ 302 (343)
+++.+++++++..++++.|.+.+ ++...+..+.+.++++++|+|++++.+++|++++++|++.....+
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44578899999999999998764 444668889999999999999999999999999999999986543
No 71
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.95 E-value=0.00016 Score=56.77 Aligned_cols=132 Identities=16% Similarity=0.091 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHH
Q 019311 161 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 240 (343)
Q Consensus 161 G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (343)
..+++++++++-+.....+.++.++..+|....+..+..+++.+..+.++.+.. .........|+. ++|.+.+..
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~---~~~~~~~~p~w~--~lGG~lG~~ 76 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP---SLASLSSVPWWA--YLGGLLGVF 76 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc---ccchhccCChHH--hccHHHHHH
Confidence 357889999999999999999999887789999999999999988888776652 222111112222 224444777
Q ss_pred HHHHHHHhhccCCceeeee-chhHHHHHHHHHHHH----HhccccchhhHHHHHHHHHhhhh
Q 019311 241 TYYIQGIVMKDRGPVFVAA-FSPLCMVIVAIMSTI----ILAEQMYLGRIIGAIIIIGGLYL 297 (343)
Q Consensus 241 ~~~l~~~a~~~~~~~~~s~-~~~~~pv~~~ll~~~----~~~e~~~~~~~iG~~li~~G~~l 297 (343)
...+.....++.+++.... ...-|.+.+.+++.+ .-++++++.+++|.+++++|+++
T Consensus 77 ~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 77 FVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 7778888899999876554 445567777777875 23567999999999999999864
No 72
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.93 E-value=5e-05 Score=67.89 Aligned_cols=122 Identities=20% Similarity=0.171 Sum_probs=90.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHH
Q 019311 157 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII 236 (343)
Q Consensus 157 ~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (343)
++..|..+++.++++.+....++|+...+.+. ...-.-.. .... ..++ .|+. |.+
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~~~~--------~~~~-----------l~~~-~W~~----G~~ 58 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRAGSG--------GRSY-----------LRRP-LWWI----GLL 58 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccch--------hhHH-----------HhhH-HHHH----HHH
Confidence 56789999999999999999999997776542 00000000 0000 0011 2222 233
Q ss_pred HHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCc
Q 019311 237 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 237 ~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~ 303 (343)
...++..+.+.|+...|++.++++..+..++..+++..+++|+++..+++|+++++.|..+......
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~ 125 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAP 125 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCC
Confidence 3455667778899999999999999999999999999999999999999999999999887765443
No 73
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.82 E-value=0.00046 Score=51.57 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHh-chhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhhe
Q 019311 58 LLEPVIDQNLYFIGMKYTTATFAAAMY-NILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 128 (343)
Q Consensus 58 ~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~ 128 (343)
+..+.+++.+...+++..|.+.+-.+. ....+.+.+++++++||++++.+ ++++.+.++|++.+-
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~------~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKG------WIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhc
Confidence 333478899999999999999986666 79999999999999999999997 999999999998863
No 74
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.76 E-value=0.00025 Score=59.97 Aligned_cols=117 Identities=18% Similarity=0.183 Sum_probs=94.1
Q ss_pred hhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 019311 4 LCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAM 83 (343)
Q Consensus 4 ~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i 83 (343)
..|.. .+..+.-.-+..-+.+++++.+|+-..... ..-.++.-....+..+++...+.+.+-..+++..|.....++
T Consensus 166 ~G~r~-g~~~~g~~g~a~gm~vAaviv~Pig~~~ag--~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~L 242 (292)
T COG5006 166 LGQRA-GRAEHGTAGVAVGMLVAALIVLPIGAAQAG--PALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTL 242 (292)
T ss_pred Hcchh-cccCCCchHHHHHHHHHHHHHhhhhhhhcc--hhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHH
Confidence 34444 223455566677788888888888764222 233456667777888999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhhee
Q 019311 84 YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL 129 (343)
Q Consensus 84 ~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~ 129 (343)
.++.|.+.++.++++++|.++..| |.++...+++..-..+
T Consensus 243 lSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAsaG~~l 282 (292)
T COG5006 243 LSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAASAGSTL 282 (292)
T ss_pred HHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHhcccc
Confidence 999999999999999999999998 9999999888776554
No 75
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.00055 Score=50.33 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHh-chhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhhee
Q 019311 57 GLLEPVIDQNLYFIGMKYTTATFAAAMY-NILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL 129 (343)
Q Consensus 57 g~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~ 129 (343)
.+..+.+++.+.-.++++.|.+.+-.+. ..-.+.+.+.+++++||+++..+ ++++.+.++|++.+-.
T Consensus 36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~------~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIK------LLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHH------HHHHHHHHHHHHHhhh
Confidence 3344478899999999999999886665 89999999999999999999996 9999999999998753
No 76
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.69 E-value=0.00022 Score=54.28 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHh-chhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhhee
Q 019311 56 LGLLEPVIDQNLYFIGMKYTTATFAAAMY-NILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL 129 (343)
Q Consensus 56 ~g~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~ 129 (343)
..+..+.+++.++..++++.|.+.+-.+. .+.-+.+.+++.++++|+++..+ ++|+.+.++|++.+-.
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~------~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMK------IAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHhhc
Confidence 34444588999999999999999998776 79999999999999999999997 9999999999988864
No 77
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.65 E-value=0.00016 Score=53.66 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhhccCCcee-eeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhc
Q 019311 235 IICSGLTYYIQGIVMKDRGPVF-VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 300 (343)
Q Consensus 235 ~~~~~~~~~l~~~a~~~~~~~~-~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~ 300 (343)
+.+..+++++...++|+.|... .++-..+..+.+.+.++++++|++++.+++|+.++++|++....
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 4457889999999999999864 57777788999999999999999999999999999999998754
No 78
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.64 E-value=0.00032 Score=52.11 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHh-chhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhhe
Q 019311 58 LLEPVIDQNLYFIGMKYTTATFAAAMY-NILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 128 (343)
Q Consensus 58 ~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~ 128 (343)
+..+..++.+...+++..|.+.+-.+. .+..+.+.+++++++||++++.+ ++++.+.++|++.+-
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~------~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPAR------LLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHhhh
Confidence 444488899999999999999886666 79999999999999999999997 999999999999875
No 79
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.64 E-value=0.0011 Score=49.85 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHh-chhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhhee
Q 019311 57 GLLEPVIDQNLYFIGMKYTTATFAAAMY-NILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL 129 (343)
Q Consensus 57 g~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~ 129 (343)
.+..+.+++.++..+++..|.+.+-.+. .+.-+.+.+++++++||++++.+ ++|+.+.++|++++-.
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~------~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 4555588899999999999999997775 79999999999999999999997 9999999999999864
No 80
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.63 E-value=0.00021 Score=61.97 Aligned_cols=79 Identities=13% Similarity=0.254 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCccC
Q 019311 226 KLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 305 (343)
Q Consensus 226 ~~~~l~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~~ 305 (343)
+.+....-+++ ..+...+.+.++++.+|+...++..+..++++++++++++.+++..||++..+.++|+.+........
T Consensus 16 ~~~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 16 DTLKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 45566666665 88889999999999999999999999999999999999999999999999999999999987765544
No 81
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.0011 Score=52.11 Aligned_cols=139 Identities=13% Similarity=0.083 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHH
Q 019311 158 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC 237 (343)
Q Consensus 158 ~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (343)
..+..+.+++++++-......+.++.+..++|..-....+..+++.+..+.++.+. ...+.......|+. ..-|++
T Consensus 3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~--~~~~a~~~~~pwW~-~~GG~l- 78 (150)
T COG3238 3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG--HPGLAAVASAPWWA-WIGGLL- 78 (150)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC--CCchhhccCCchHH-HHccch-
Confidence 34677889999999999999999999988888888999999999888888877443 22222112212222 222332
Q ss_pred HHHHHHHHHHhhccCCce-eeeechhHHHHHHHHHHHHHhc----cccchhhHHHHHHHHHhhhhhhc
Q 019311 238 SGLTYYIQGIVMKDRGPV-FVAAFSPLCMVIVAIMSTIILA----EQMYLGRIIGAIIIIGGLYLVVW 300 (343)
Q Consensus 238 ~~~~~~l~~~a~~~~~~~-~~s~~~~~~pv~~~ll~~~~~~----e~~~~~~~iG~~li~~G~~l~~~ 300 (343)
+.+-.........+.+++ .+.....-|.+.+.+++.+=+. .+++..+++|++++++|+++..+
T Consensus 79 Ga~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 79 GAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 444444455566677665 4556666777888888876543 57899999999999999665544
No 82
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.00023 Score=52.33 Aligned_cols=65 Identities=20% Similarity=0.400 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhhccCCce-eeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhcc
Q 019311 237 CSGLTYYIQGIVMKDRGPV-FVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 301 (343)
Q Consensus 237 ~~~~~~~l~~~a~~~~~~~-~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~ 301 (343)
+..+++.+...++|+.|.. ..++..-.-.+.+.+.++++|+|+.++.+++|..++++|++.....
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 4677899999999999886 4678888899999999999999999999999999999999988654
No 83
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.58 E-value=0.001 Score=49.75 Aligned_cols=65 Identities=9% Similarity=0.184 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhhccCCcee-eeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhh
Q 019311 235 IICSGLTYYIQGIVMKDRGPVF-VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 299 (343)
Q Consensus 235 ~~~~~~~~~l~~~a~~~~~~~~-~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~ 299 (343)
+.+..+++++...++|+.|... .++...+..+.+.+.++++++|++++.+++|+++++.|++...
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3346889999999999999864 5677778889999999999999999999999999999998764
No 84
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.49 E-value=0.0022 Score=55.80 Aligned_cols=81 Identities=19% Similarity=0.214 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeech-hHHHHHHHHHHHHHhccccchhhH----HHHHHHHHhhhhhhc
Q 019311 226 KLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFS-PLCMVIVAIMSTIILAEQMYLGRI----IGAIIIIGGLYLVVW 300 (343)
Q Consensus 226 ~~~~l~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~-~~~pv~~~ll~~~~~~e~~~~~~~----iG~~li~~G~~l~~~ 300 (343)
.++.-+..|++ -.+++..++.+.++.+.+++.++. .++-+.+.++++++|||.-+..++ ++.+++++|+++..+
T Consensus 44 ~~~~~~lsG~~-W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 44 SFIVAFLSGAF-WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 45455555554 789999999999999999999887 677888999999999998776654 488899999999887
Q ss_pred cCccCCC
Q 019311 301 GKSKDHK 307 (343)
Q Consensus 301 ~~~~~~~ 307 (343)
.++++++
T Consensus 123 ~~~~~~~ 129 (269)
T PF06800_consen 123 QDKKSDK 129 (269)
T ss_pred ccccccc
Confidence 6665543
No 85
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.47 E-value=0.00091 Score=60.48 Aligned_cols=140 Identities=15% Similarity=0.139 Sum_probs=92.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH--HHH--HHHHHccCCccceeecchhhHHHHHH
Q 019311 157 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVE--GTL--AALIMERGKASIWAIHWDTKLVASVY 232 (343)
Q Consensus 157 ~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~--~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (343)
+...|.++.+++++||+...+-+|+ .|+.+ +... |- ..+.+. +.| ...+..+.-.+.....+...+..-..
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 4578999999999999999998888 45432 3322 32 111111 111 11111110111222233444555555
Q ss_pred HHHHHHHHHHHHHHHhhccCCceeeee-chhHHHHHHHHHHHHHhcccc---c----hhhHHHHHHHHHhhhhhhccC
Q 019311 233 SGIICSGLTYYIQGIVMKDRGPVFVAA-FSPLCMVIVAIMSTIILAEQM---Y----LGRIIGAIIIIGGLYLVVWGK 302 (343)
Q Consensus 233 ~~~~~~~~~~~l~~~a~~~~~~~~~s~-~~~~~pv~~~ll~~~~~~e~~---~----~~~~iG~~li~~G~~l~~~~~ 302 (343)
.|++ -.+++..+..++++.+.+.... ..-++-+++.+++.+++||-. + ....+|++++++|+.+..+..
T Consensus 79 ~G~~-W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 79 FGAL-WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHH-HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 5554 7889999999999999987554 456888999999999998754 2 337889999999999998743
No 86
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.40 E-value=0.0012 Score=48.15 Aligned_cols=57 Identities=21% Similarity=0.429 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhccCCceee-eechhHHHHHHHHHHHHHhccccchhhHHHHHHH
Q 019311 235 IICSGLTYYIQGIVMKDRGPVFV-AAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIII 291 (343)
Q Consensus 235 ~~~~~~~~~l~~~a~~~~~~~~~-s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li 291 (343)
+.+.+++++++..++++.+.+.+ .+...+..+.+.+.+.+++||++|+.+++|+.+|
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 33578889999999999999887 5556799999999999999999999999999876
No 87
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.30 E-value=0.00044 Score=59.73 Aligned_cols=133 Identities=10% Similarity=0.026 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHH
Q 019311 161 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 240 (343)
Q Consensus 161 G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (343)
|.+.++.|+++|+...+=.|+.-.. |++....++.....+......++.+. ..+ ..+. ...|.+ -+.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~---p~f------~p~a-mlgG~l-W~~ 67 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGF---PPF------YPWA-MLGGAL-WAT 67 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCC---Ccc------eeHH-Hhhhhh-hhc
Confidence 5678889999999999987775432 56666666555555555554443322 111 1111 111222 334
Q ss_pred HHHHHHHhhccCCceeeeec-hhHHHHHHHHHHHH-Hhcccc-----chhhHHHHHHHHHhhhhhhccCccCC
Q 019311 241 TYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTI-ILAEQM-----YLGRIIGAIIIIGGLYLVVWGKSKDH 306 (343)
Q Consensus 241 ~~~l~~~a~~~~~~~~~s~~-~~~~pv~~~ll~~~-~~~e~~-----~~~~~iG~~li~~G~~l~~~~~~~~~ 306 (343)
+..+-.-.++.++....-.+ ...+.+.+...+.+ +||++. .+..++|++++++|..++..-|.+++
T Consensus 68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~ 140 (254)
T PF07857_consen 68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEK 140 (254)
T ss_pred CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCC
Confidence 44444455555554433322 33355566666554 455533 45689999999999988876655543
No 88
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.26 E-value=0.0026 Score=47.64 Aligned_cols=109 Identities=9% Similarity=0.054 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHHHHHHH
Q 019311 167 AGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQG 246 (343)
Q Consensus 167 ~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 246 (343)
+-+++|+..+-+.|+..+..++.... . +..-.... ++. .|-..+ .+.....+...|+
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~-~~~~~~~~-----Ll~--------------n~~y~i--pf~lNq~GSv~f~ 59 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKAS-L-QLLQEIKF-----LLL--------------NPKYII--PFLLNQSGSVLFF 59 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccch-H-HHHHHHHH-----HHH--------------hHHHHH--HHHHHHHHHHHHH
Confidence 45789999999999988876532221 1 21111111 110 111111 2333566777888
Q ss_pred HhhccCCceeeeech-hHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhh
Q 019311 247 IVMKDRGPVFVAAFS-PLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLV 298 (343)
Q Consensus 247 ~a~~~~~~~~~s~~~-~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~ 298 (343)
+.+.+.+.+.+.++. .+.-+++++.++++.+|..+...++|++++++|+.+.
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 999999999999985 9999999999988888888999999999999998764
No 89
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=97.24 E-value=0.096 Score=46.92 Aligned_cols=243 Identities=14% Similarity=0.138 Sum_probs=142.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh-chhHHHHHHHHHHHhhcccc-ccccccchhhHHHHHHHh
Q 019311 45 MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMY-NILPAITFLMAWIIRLENVN-LKSIRSLAKVIGTLATVA 122 (343)
Q Consensus 45 ~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~p~~~~lla~~~~~e~~~-~~~~~~~~k~~~~~i~~~ 122 (343)
.+...+.+..+.|++= .+....|=.+++|+..+...-+. .+..++..++-.++.++--. ..++.+..-++|++++++
T Consensus 68 ~~~~~l~~~~l~G~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~Li 146 (344)
T PF06379_consen 68 TPASTLFWTFLFGVLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLI 146 (344)
T ss_pred CChhHHHHHHHHHHHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHH
Confidence 3456677777777776 67777788999999988775554 77777777776665432100 111223334999999999
Q ss_pred hhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHH------HHhhCC-ch----hH
Q 019311 123 GAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAI------TLKAYP-AE----LS 191 (343)
Q Consensus 123 Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~------~~~~~~-~~----~~ 191 (343)
|+.++.......+ . +. +.+.++.+..+|.+.++++++..|.++.-... ...+.. +| ..
T Consensus 147 GIai~g~AG~~Ke-~-----~~-----~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~ 215 (344)
T PF06379_consen 147 GIAICGKAGSMKE-K-----EL-----GEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLP 215 (344)
T ss_pred HHHHHhHHHHhhh-h-----hh-----ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCc
Confidence 9999874432110 0 00 01123345678999999999999988876432 111111 12 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHccC--Ccc---ceeecch---hhHHHHHHHHHHHHHHHHHHHHHhhccCCc----eeeee
Q 019311 192 LTAWICFFGTVEGTLAALIMERG--KAS---IWAIHWD---TKLVASVYSGIICSGLTYYIQGIVMKDRGP----VFVAA 259 (343)
Q Consensus 192 ~~~~~~~~~~i~~~~~~~~~~~~--~~~---~~~~~~~---~~~~~l~~~~~~~~~~~~~l~~~a~~~~~~----~~~s~ 259 (343)
.....+..+++.-+.++++.... +.. +.....+ .++..-+..|.+ -...+.+|..+-.+.++ .--.+
T Consensus 216 ~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~l-Wy~qfffYg~G~s~lg~~~~~~sW~i 294 (344)
T PF06379_consen 216 VYVVVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVL-WYSQFFFYGMGESKLGASGPFSSWAI 294 (344)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccccHHHHH
Confidence 23334455666666776654221 111 1111111 122223333343 45566666667666664 34556
Q ss_pred chhHHHHHHHHHHHHHhcc------ccchhhHHHHHHHHHhhhhhhcc
Q 019311 260 FSPLCMVIVAIMSTIILAE------QMYLGRIIGAIIIIGGLYLVVWG 301 (343)
Q Consensus 260 ~~~~~pv~~~ll~~~~~~e------~~~~~~~iG~~li~~G~~l~~~~ 301 (343)
.+.+..+++-+++. .++| +.-..-++|+++++.++.++-+.
T Consensus 295 ~ma~~vl~snvwGl-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~G 341 (344)
T PF06379_consen 295 HMALIVLFSNVWGL-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGYG 341 (344)
T ss_pred HHHHHHHHHHHHHH-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 77888888888885 4666 23344688999888888776543
No 90
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.11 E-value=0.0063 Score=44.30 Aligned_cols=57 Identities=12% Similarity=0.058 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHh-chhHHHHHHHHHHHhhccccccccccchhhHHHHH
Q 019311 57 GLLEPVIDQNLYFIGMKYTTATFAAAMY-NILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLA 119 (343)
Q Consensus 57 g~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i 119 (343)
.+..+.+++.++..++++.|.+.+-.+. .+..+.+.+++.+++||+++..+ ++|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence 3434588889999999999999996665 79999999999999999999997 988875
No 91
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.06 E-value=0.0061 Score=47.91 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=76.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhchhHHHHHH
Q 019311 14 SPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFL 93 (343)
Q Consensus 14 ~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~l 93 (343)
+|+..+++.+..+++++..+....+++...+.+.. -+|....|+++ ...-.+........+++.+..+.-+.=++..+
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~-p~w~~lGG~lG-~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl 106 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGRPSLASLSSV-PWWAYLGGLLG-VFFVLSNIILVPRLGAALTTILIVAGQLIASL 106 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccC-ChHHhccHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 49999999999999999988887665433332222 23444578888 88888888999999999888877554444444
Q ss_pred -HHHH----HhhccccccccccchhhHHHHHHHhhhhh
Q 019311 94 -MAWI----IRLENVNLKSIRSLAKVIGTLATVAGAMV 126 (343)
Q Consensus 94 -la~~----~~~e~~~~~~~~~~~k~~~~~i~~~Gv~l 126 (343)
+-.+ .-++++++++ ++|+++.++|+.+
T Consensus 107 ~iD~fG~fg~~~~~~~~~r------~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 107 LIDHFGLFGAPKRPFSLRR------ILGLALMIAGVIL 138 (138)
T ss_pred HHHHccccCCCCCCCCHHH------HHHHHHHHHHHhC
Confidence 4332 2467777775 9999999999864
No 92
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.95 E-value=0.056 Score=48.47 Aligned_cols=141 Identities=14% Similarity=0.072 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC---chhHHHHHHHHHHHHHHHHHHHHHccC--Cc-----cceeecchhhHHH
Q 019311 160 KGALMITAGCFSWSFFIILQAITLKAYP---AELSLTAWICFFGTVEGTLAALIMERG--KA-----SIWAIHWDTKLVA 229 (343)
Q Consensus 160 ~G~~~~l~a~~~~a~~~i~~k~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~ 229 (343)
.=.+..+...+.++......|...++.+ .|.+..+..-+.-.++.....+..+.. +. ..+....+.+...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 4445555667777777777777655542 244545555455555555555433210 00 0111112223344
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhcc
Q 019311 230 SVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 301 (343)
Q Consensus 230 l~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~ 301 (343)
+..-+++ .++-.-+++.++.+.++++..+...+....++++..++++++++..||...++.+.|+.+....
T Consensus 95 ~~vPa~i-YalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~ 165 (345)
T KOG2234|consen 95 VSVPALI-YALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP 165 (345)
T ss_pred HHHHHHH-HHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 4444454 6667778999999999999999999999999999999999999999999999999999999843
No 93
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.68 E-value=0.0012 Score=58.90 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=80.5
Q ss_pred HHHHHHHHHh--hCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019311 175 FIILQAITLK--AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDR 252 (343)
Q Consensus 175 ~~i~~k~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~a~~~~ 252 (343)
.++.+|+..+ ..+-|..++......+.+.......+... + ..+..++..+..++-+|++ ..++..+-+.++++.
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~-~--~~~~~~~~~~~~llpl~~~-~~~~~v~~n~Sl~~v 107 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLV-P--PSKISSKLPLRTLLPLGLV-FCISHVLGNVSLSYV 107 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCC-C--CCccccccchHHHHHHHHH-HHHHHHhcchhhhcc
Confidence 4455788888 55667888888666666665555543322 1 1122233467778888886 788999999999999
Q ss_pred CceeeeechhHHHHHHHHHHHHHhccccchhhHH
Q 019311 253 GPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRII 286 (343)
Q Consensus 253 ~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~i 286 (343)
+.+.+..+-.++|++++++++++.+|+.+...+.
T Consensus 108 ~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~l 141 (316)
T KOG1441|consen 108 PVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYL 141 (316)
T ss_pred chhHHHHHHhhcchhHHHHHHHHhCCCCcceEEE
Confidence 9999999999999999999999999988765433
No 94
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.0015 Score=57.34 Aligned_cols=129 Identities=16% Similarity=0.201 Sum_probs=97.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHH
Q 019311 155 THNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSG 234 (343)
Q Consensus 155 ~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (343)
..++..|..+++.+++..+...++.|+..++... ...+ . .......... ...+.|
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~----~~~r---------------a--~~gg~~yl~~----~~Ww~G 70 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA----SGLR---------------A--GEGGYGYLKE----PLWWAG 70 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh----hccc---------------c--cCCCcchhhh----HHHHHH
Confidence 3467789999999999999999988887776421 0000 0 0111111111 223346
Q ss_pred HHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCccCCCC
Q 019311 235 IICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKS 308 (343)
Q Consensus 235 ~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~~~~~ 308 (343)
.+...++-...+.|....|++.++++..++.+++++++..+++|++++...+|+++.++|..+.+....++++.
T Consensus 71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i 144 (335)
T KOG2922|consen 71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI 144 (335)
T ss_pred HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc
Confidence 66677788888888899999999999999999999999999999999999999999999999888766555443
No 95
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.50 E-value=0.0013 Score=55.43 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHH
Q 019311 161 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 240 (343)
Q Consensus 161 G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (343)
..+.+++=++.|+..-....+... +|.+-+.-..+.+.++.+...++..+ .. ....+..-+..|.+ -.+
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~lGtT~GALifaiiv~~~~~p----~~---T~~~~iv~~isG~~-Ws~ 71 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG---KPYQQTLGTTLGALIFAIIVFLFVSP----EL---TLTIFIVGFISGAF-WSF 71 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC---ChhHhhhhccHHHHHHHHHHheeecC----cc---chhhHHHHHHhhhH-hhh
Confidence 456788889999988776554322 34444444444444444444433211 11 22233333444444 678
Q ss_pred HHHHHHHhhccCCceeeeech-hHHHHHHHHHHHHHhccccchhh----HHHHHHHHHhhhhhhccCc
Q 019311 241 TYYIQGIVMKDRGPVFVAAFS-PLCMVIVAIMSTIILAEQMYLGR----IIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 241 ~~~l~~~a~~~~~~~~~s~~~-~~~pv~~~ll~~~~~~e~~~~~~----~iG~~li~~G~~l~~~~~~ 303 (343)
++...+++.++.+.+++.++. ..+-+-+.+++.+.|||..+..+ .+..++++.|+++..+.++
T Consensus 72 GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 72 GQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 999999999999999988876 46778888999999999988775 4567788888888776554
No 96
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.27 E-value=0.0087 Score=53.72 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCccC
Q 019311 231 VYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 305 (343)
Q Consensus 231 ~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~~ 305 (343)
++.+.+ -+++.+.++.|+++++++..+++...+-+|+..++.++.+|++++.+.++..+-++|+++++..+.++
T Consensus 163 l~fc~l-WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 163 LFFCPL-WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 344444 57889999999999999999999999999999999999999999999999999999999999876654
No 97
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.25 E-value=0.011 Score=44.34 Aligned_cols=61 Identities=16% Similarity=0.306 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhcccchhHHHHHh-chhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhh
Q 019311 61 PVIDQNLYFIGMKYTTATFAAAMY-NILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVM 127 (343)
Q Consensus 61 ~~~~~~~~~~al~~~~~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li 127 (343)
.-.+...|+..+...+.+.+..+. ++.=++|++.++++.+|..+++. ++|+++.++|+.++
T Consensus 51 Nq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~------~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 51 NQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRT------WLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhH------HHHHHHHHcCeeee
Confidence 366778899999999999999996 89999999999988877778776 99999999998875
No 98
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=95.71 E-value=0.58 Score=40.67 Aligned_cols=174 Identities=11% Similarity=0.027 Sum_probs=99.2
Q ss_pred cchhhhhhhCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 019311 2 DVLCKAALNKGMSPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAA 81 (343)
Q Consensus 2 ~~~~k~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ 81 (343)
|+-.|.- +. -|++.+-++-.....+.-+....+.+ .++ .+.+.++.|.+= +.++.+..-.++....+...
T Consensus 16 ~vPvK~~-~~-gDg~~fQw~~~~~i~~~g~~v~~~~~---~p~----f~p~amlgG~lW-~~gN~~~vpii~~iGLglg~ 85 (254)
T PF07857_consen 16 FVPVKKF-DT-GDGFFFQWVMCSGIFLVGLVVNLILG---FPP----FYPWAMLGGALW-ATGNILVVPIIKTIGLGLGM 85 (254)
T ss_pred ceeeEec-cC-CCcHHHHHHHHHHHHHHHHHHHHhcC---CCc----ceeHHHhhhhhh-hcCceeehhHhhhhhhHHHH
Confidence 4555655 33 47777766655555555444444322 222 233445555555 88888899999999999999
Q ss_pred HHhch-hHHHHHHHHHH-HhhccccccccccchhhHHHHHHHhhhhhheeecCccccccc------ccCC---C-CCCC-
Q 019311 82 AMYNI-LPAITFLMAWI-IRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFW------TKGA---E-NHGH- 148 (343)
Q Consensus 82 ~i~~~-~p~~~~lla~~-~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~------~~~~---~-~~~~- 148 (343)
.+.+. +-+..-..+++ +++++..... .-.-.++|++++++|..+....+.+..+... ...+ . +++.
T Consensus 86 liW~s~n~l~Gw~~grfGlFg~~~~~~~-~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (254)
T PF07857_consen 86 LIWGSVNCLTGWASGRFGLFGLDPQVPS-SPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSIEDVIEIEDDSE 164 (254)
T ss_pred HHHHHHHHHHHHHHhhceeccccccccc-hhHHHHHHHHHHHHHHHheeeecCCCCCccccccccccccccccccccccc
Confidence 99865 44444444543 4544332211 0111378888888888877754433211000 0000 0 0000
Q ss_pred -CCCCC------CccchhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 019311 149 -GSSGT------TTHNSIKGALMITAGCFSWSFFIILQAITLKAY 186 (343)
Q Consensus 149 -~~~~~------~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~ 186 (343)
.++++ .......|..++++++++|+...+=.+...++.
T Consensus 165 ~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 165 NSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred cccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence 00111 112477899999999999999988877765553
No 99
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=0.23 Score=44.00 Aligned_cols=134 Identities=11% Similarity=0.062 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHH--HHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHH
Q 019311 162 ALMITAGCFSWSFFIILQAITLKAYPAELSLTA--WICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG 239 (343)
Q Consensus 162 ~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (343)
...++.=+++.....+.+|.....++-|..+.. .|.+.+.+.....-...-- +.+.........|..+..+ ..
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv-~~~~l~~~~~kk~~P~~~l----f~ 88 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLV-NFRPLDLRTAKKWFPVSLL----FV 88 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcee-ecCCcChHHHHHHccHHHH----HH
Confidence 344444455555566677888777765555444 7777777665555432211 2222222222233322111 11
Q ss_pred HHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhc
Q 019311 240 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 300 (343)
Q Consensus 240 ~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~ 300 (343)
.....-..++++.+.....++..+.|+++.+.+..++|.+++...+.....+++|......
T Consensus 89 ~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444|consen 89 GMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred HHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence 1233345789999999999999999999999999999999999999999999999877654
No 100
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=95.36 E-value=0.053 Score=48.52 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=89.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHH-HHHHHHHHHHHHHHH-HccCCc-cceeecchhhHHHHHHH
Q 019311 157 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAW-ICFFGTVEGTLAALI-MERGKA-SIWAIHWDTKLVASVYS 233 (343)
Q Consensus 157 ~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~~~~-~~~~~~~~~~~~~l~~~ 233 (343)
....|.++..+++++.+.+.+-.||. |+.+ +..... +.+++.+ ..|.... ..-++. +.....+...+....+.
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws--WEs~Wlv~gi~swl-i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~ 79 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS--WESYWLVQGIFSWL-IVPWLWALLAIPDFFSIYSATPASTLFWTFLF 79 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc-CCcc--HHHHHHHHHHHHHH-HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence 45789999999999999999988884 4443 332222 2233332 2332221 221122 12223344456666777
Q ss_pred HHHHHHHHHHHHHHhhccCCcee-eeechhHHHHHHHHHHHHHhcc-------ccchhhHHHHHHHHHhhhhhhccCc
Q 019311 234 GIICSGLTYYIQGIVMKDRGPVF-VAAFSPLCMVIVAIMSTIILAE-------QMYLGRIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 234 ~~~~~~~~~~l~~~a~~~~~~~~-~s~~~~~~pv~~~ll~~~~~~e-------~~~~~~~iG~~li~~G~~l~~~~~~ 303 (343)
|++ -.++-..|-.++||++.+. .++..-+.-++..++--++.++ +-....++|+++.++|+.+..+...
T Consensus 80 G~l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~ 156 (344)
T PF06379_consen 80 GVL-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGS 156 (344)
T ss_pred HHH-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHH
Confidence 776 6788888999999998864 4555666666666665554332 2234589999999999999876543
No 101
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.59 E-value=0.4 Score=37.87 Aligned_cols=111 Identities=15% Similarity=0.083 Sum_probs=63.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHh-chhHHHHH
Q 019311 14 SPYVLVVYRHAAATIAMAPFAVILDKKIRPKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMY-NILPAITF 92 (343)
Q Consensus 14 ~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~p~~~~ 92 (343)
+|+...+..+..+.+++..+.+.+.++......++.-+|....|+++ +..-..-........++....+. .-+-+...
T Consensus 33 spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lG-a~~vt~s~~l~p~lGa~~t~~l~i~gQli~gl 111 (150)
T COG3238 33 SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLG-AIFVTSSILLAPRLGAATTIALVIAGQLIMGL 111 (150)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchh-hhhhhhhHHhccchhHHHHHHHHHHHHHHHHH
Confidence 59999999999999999888887444332222233334455666666 55444444555555555555544 33333333
Q ss_pred HHHHH-HhhccccccccccchhhHHHHHHHhhhhhhe
Q 019311 93 LMAWI-IRLENVNLKSIRSLAKVIGTLATVAGAMVMT 128 (343)
Q Consensus 93 lla~~-~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~ 128 (343)
++-.+ +++++ +++++..|++|+++.++|++++.
T Consensus 112 liD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 112 LIDHFGWFGVP---KRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred HHHhhcccCCC---cCCCCHHHHHHHHHHHHHHHHhc
Confidence 33221 12111 12333446999999999955543
No 102
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.58 E-value=0.66 Score=40.88 Aligned_cols=130 Identities=12% Similarity=0.019 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHh--------hCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHHHHHHH
Q 019311 169 CFSWSFFIILQAITLK--------AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 240 (343)
Q Consensus 169 ~~~~a~~~i~~k~~~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (343)
-..+-.+.++++++.. +..++..+.+.+-+.+.++.....- .. ..+ ......|+...+.++- ..+
T Consensus 23 ~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~--~~-k~~---~~~~apl~~y~~is~t-n~~ 95 (327)
T KOG1581|consen 23 YATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLK--WW-KKE---LSGVAPLYKYSLISFT-NTL 95 (327)
T ss_pred HHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHh--cc-ccc---CCCCCchhHHhHHHHH-hhc
Confidence 3444455666665443 2335566666666766666533322 11 111 2233355666666764 677
Q ss_pred HHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCccC
Q 019311 241 TYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 305 (343)
Q Consensus 241 ~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~~ 305 (343)
+-.+.+.|++|++=.+..+.-....+-..+++.++.+.+.++.+++-..+|-.|+.+....+..+
T Consensus 96 s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 96 SSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred chHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 88888999999999988899999999999999999999999999999999999999888776554
No 103
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=94.40 E-value=0.32 Score=42.79 Aligned_cols=124 Identities=10% Similarity=0.082 Sum_probs=86.6
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHH-HHHHHHHHHHHHHHHHHHHhhccCCceee
Q 019311 179 QAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLV-ASVYSGIICSGLTYYIQGIVMKDRGPVFV 257 (343)
Q Consensus 179 ~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~l~~~a~~~~~~~~~ 257 (343)
.++..+.++-|...+.....+-.......-.+.+...+......+..... .+.-.|+ +++.=..+-++++++++.+..
T Consensus 35 ~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtal-ata~DIGLSN~sl~yVtlSlY 113 (349)
T KOG1443|consen 35 FKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTAL-ATALDIGLSNWSLEYVTLSLY 113 (349)
T ss_pred hhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhh-hhhcccccccceeeeeeeeee
Confidence 44445555557777777777766655555544443111111111111222 2233344 477777888999999999999
Q ss_pred eechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCc
Q 019311 258 AAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 258 s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~ 303 (343)
++.-+..++|..+++.++-=|++++....=+.+|.+|+++.+++..
T Consensus 114 TM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT 159 (349)
T KOG1443|consen 114 TMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST 159 (349)
T ss_pred eeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc
Confidence 9999999999999999999999999999999999999998887554
No 104
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.01 E-value=0.15 Score=42.96 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhh
Q 019311 48 AILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVM 127 (343)
Q Consensus 48 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li 127 (343)
..|+.+.+.++++ .+++.+.+.-..+-+|-..+++..+--.|+.+.+.++++.+++.+| |+|..+.+.|...=
T Consensus 239 ~~~~~l~l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQ------wlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 239 YVFWDLTLLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQ------WLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHHhhhH
Confidence 4577788888888 8999999999999999999999999999999999999999999998 99999999988765
Q ss_pred e
Q 019311 128 T 128 (343)
Q Consensus 128 ~ 128 (343)
.
T Consensus 312 ~ 312 (337)
T KOG1580|consen 312 V 312 (337)
T ss_pred h
Confidence 5
No 105
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=93.74 E-value=0.059 Score=46.07 Aligned_cols=59 Identities=8% Similarity=-0.005 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhcccchhHHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhh
Q 019311 62 VIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV 126 (343)
Q Consensus 62 ~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~l 126 (343)
+....+....+++.++...+....+.++++.+++.++++|+++..+ ++|+.+.+.|+.+
T Consensus 163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~------~~g~~lV~~~~~l 221 (222)
T TIGR00803 163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTF------YLGAILVFLATFL 221 (222)
T ss_pred HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHeeeEe
Confidence 5666778899999999999999999999999999999999999998 9999999988653
No 106
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=93.66 E-value=0.035 Score=45.44 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=58.2
Q ss_pred HHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccC
Q 019311 240 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 302 (343)
Q Consensus 240 ~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~ 302 (343)
.+.+.|..++++++++.++.+..-+..+..+++++.+++++...+++..++.+.|++...+..
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 357888999999999999999999999999999999999999999999999999998887644
No 107
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=93.56 E-value=0.61 Score=39.18 Aligned_cols=111 Identities=12% Similarity=0.121 Sum_probs=91.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhccCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhchh
Q 019311 12 GMSPYVLVVYRHAAATIAMAPFAVILDKKIRP----KMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNIL 87 (343)
Q Consensus 12 ~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~ 87 (343)
+...++..++.-.++..+++.+....+.+.+. .++.....+.+..|++. ....+|.-++++.++.+..+++..+.
T Consensus 182 Nf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s-vgiSy~saWcvrVtSSTtySMvGALN 260 (309)
T COG5070 182 NFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS-VGISYCSAWCVRVTSSTTYSMVGALN 260 (309)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH-hhhhhccceeEeehhhhHHHHHHHhh
Confidence 45678888999999999999888877665443 23455567888888888 66677888999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhhee
Q 019311 88 PAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL 129 (343)
Q Consensus 88 p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~ 129 (343)
-.-.++.+.++++|+.+... +.++.+++....+-.+
T Consensus 261 Klp~alaGlvffdap~nf~s------i~sillGflsg~iYav 296 (309)
T COG5070 261 KLPIALAGLVFFDAPVNFLS------IFSILLGFLSGAIYAV 296 (309)
T ss_pred hChHHHhhhhhcCCchhHHH------HHHHHHHHHHHHHHHH
Confidence 99999999999999999986 9999998877666553
No 108
>PRK02237 hypothetical protein; Provisional
Probab=91.90 E-value=2.3 Score=31.39 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=42.0
Q ss_pred Hhhcc-cchhHHHHHh-chhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhhee
Q 019311 70 IGMKY-TTATFAAAMY-NILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL 129 (343)
Q Consensus 70 ~al~~-~~~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~ 129 (343)
..++- .+.+.+-..+ ....+...+-.+.+.|+|+++.+ ++|..++++|+.++..
T Consensus 50 lTl~p~~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D------~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 50 LTLQPDAAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWD------WIGAAICLVGMAVIMY 105 (109)
T ss_pred HhcCCchhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhH------HHhHHHHHHhHHHhee
Confidence 33443 4456555555 67777777889999999999998 9999999999998863
No 109
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=91.38 E-value=0.039 Score=47.10 Aligned_cols=138 Identities=13% Similarity=0.057 Sum_probs=96.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHHHHHHH
Q 019311 157 NSIKGALMITAGCFSWSFFIILQAITLKA-YPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGI 235 (343)
Q Consensus 157 ~~~~G~~~~l~a~~~~a~~~i~~k~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (343)
..++|..++=.=++|-......+..+.++ ...|..-++..+..-+++-.++.++-.. .. ...|..-+.+++
T Consensus 15 k~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~----~~----~~~~~hYilla~ 86 (336)
T KOG2766|consen 15 KTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK----YI----KAKWRHYILLAF 86 (336)
T ss_pred hhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH----HH----HHHHHHhhheeE
Confidence 44555555444444444444555555555 3356777777777666666666654221 11 113344455566
Q ss_pred HHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCc
Q 019311 236 ICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 236 ~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~ 303 (343)
+ ..-+.++...|.|+++-+.+..+--...+...+++|++++.+..+.++.|+++.++|+.+.+....
T Consensus 87 ~-DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV 153 (336)
T KOG2766|consen 87 V-DVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDV 153 (336)
T ss_pred E-eecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeee
Confidence 4 667777788899999999999999999999999999999999999999999999999998876544
No 110
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=90.63 E-value=2.2 Score=31.44 Aligned_cols=54 Identities=13% Similarity=0.270 Sum_probs=43.9
Q ss_pred HhhcccchhHHHHHh-chhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhhee
Q 019311 70 IGMKYTTATFAAAMY-NILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL 129 (343)
Q Consensus 70 ~al~~~~~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~ 129 (343)
..++-.+.+.+-..+ ....+...+-.+.+.|+++++.+ ++|..++++|+.++..
T Consensus 49 ~Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D------~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 49 LTLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWD------WIGAAICLVGVAIILF 103 (107)
T ss_pred hhcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHH------HHhHHHHHHhHHheEe
Confidence 445555566665555 78888888889999999999998 9999999999999874
No 111
>PRK02237 hypothetical protein; Provisional
Probab=90.33 E-value=1.2 Score=32.80 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=39.5
Q ss_pred eeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccC
Q 019311 257 VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 302 (343)
Q Consensus 257 ~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~ 302 (343)
.+...-.-.+.+.++.+.+-|++|+..+++|.++.++|+.+..+.+
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 4556667788889999999999999999999999999998876644
No 112
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=90.28 E-value=0.3 Score=42.48 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhcc
Q 019311 237 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 301 (343)
Q Consensus 237 ~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~ 301 (343)
|-..+..+.+.++..++++...++.-.-.+|+.+++.-+++.+++..||+|+..+.+|...+-..
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 56777888899999999999999999999999999999999999999999999999998877543
No 113
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=88.65 E-value=0.35 Score=42.54 Aligned_cols=132 Identities=9% Similarity=0.020 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHcc-CC-----cc----ceeecchhhHHHHHHHHH
Q 019311 166 TAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMER-GK-----AS----IWAIHWDTKLVASVYSGI 235 (343)
Q Consensus 166 l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~-----~~----~~~~~~~~~~~~l~~~~~ 235 (343)
+++.+||+..-..+|...++...| +...|-+.++.++...+..+.-+ .. .. +....+...+.. ...|.
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~-qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~-A~aGG 79 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLP-QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLF-AMAGG 79 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCcc-ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHH-HHHhh
Confidence 456789998888888776654322 22344444444433333322211 01 11 111222223333 33343
Q ss_pred HHHHHHHHHHHHhhccCCceeeeechh-HHHHHHHHHHHHHhccccc--hhhHHHHHHHHHhhhhhhc
Q 019311 236 ICSGLTYYIQGIVMKDRGPVFVAAFSP-LCMVIVAIMSTIILAEQMY--LGRIIGAIIIIGGLYLVVW 300 (343)
Q Consensus 236 ~~~~~~~~l~~~a~~~~~~~~~s~~~~-~~pv~~~ll~~~~~~e~~~--~~~~iG~~li~~G~~l~~~ 300 (343)
+.--++.++..+++...+.+.+-++.. +.-++.+++.|+. ..+.+ ..-..|++++++++++-..
T Consensus 80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfl-d~~~n~a~iLF~GV~cf~iAI~lga~ 146 (336)
T PF07168_consen 80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFL-DPKINRAEILFPGVACFLIAIILGAA 146 (336)
T ss_pred HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeec-cCCCCCceEEEccHHHHHHHHHHHHH
Confidence 346678888888888887776555442 2233344555543 34443 2456788888888777653
No 114
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=88.06 E-value=1.7 Score=31.99 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=39.8
Q ss_pred eeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCc
Q 019311 257 VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 257 ~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~ 303 (343)
.+...-.-.+.+.++++.+-+++|+..+++|.++.++|+.+..+.++
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 45556667788899999999999999999999999999988876543
No 115
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=82.48 E-value=0.4 Score=41.52 Aligned_cols=49 Identities=8% Similarity=0.120 Sum_probs=0.0
Q ss_pred hcccchhHHHHHhchhHHHHHHHHH--HHhhccccccccccchhhHHHHHHHhhhhh
Q 019311 72 MKYTTATFAAAMYNILPAITFLMAW--IIRLENVNLKSIRSLAKVIGTLATVAGAMV 126 (343)
Q Consensus 72 l~~~~~~~~~~i~~~~p~~~~lla~--~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~l 126 (343)
++-.+-+..+++++.+.+++.++-. +|.|+-+.+.. .+++++.++-..+
T Consensus 44 msd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLG------lLCiilimi~lLv 94 (381)
T PF05297_consen 44 MSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLG------LLCIILIMIVLLV 94 (381)
T ss_dssp ---------------------------------------------------------
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcch------HHHHHHHHHHHHH
Confidence 3333444445555554444443333 33344455554 6665555544433
No 116
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.14 E-value=2.5 Score=36.81 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=75.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecc----hhhHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeechh
Q 019311 187 PAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHW----DTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSP 262 (343)
Q Consensus 187 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~ 262 (343)
+.|.-.+.++++....+...+...... ....+..+. -....-+.=+.++ -.......+..+++++.+-.-+-..
T Consensus 59 d~plf~t~~qcLvt~~~c~~ls~ls~k-~~~~ftfp~~~ldl~t~r~vlplsvV-fi~mI~fnnlcL~yVgVaFYyvgRs 136 (347)
T KOG1442|consen 59 DAPLFITWYQCLVTTSICLVLSSLSVK-YPGLFTFPSLQLDLATARQVLPLSVV-FILMISFNNLCLKYVGVAFYYVGRS 136 (347)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhh-ccceeccCcccccHHHHHhhcchhhe-eeeehhccceehhhcceEEEEeccc
Confidence 357888888888877766666554332 111111111 0011111111221 2334556778999999999999999
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhh
Q 019311 263 LCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 299 (343)
Q Consensus 263 ~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~ 299 (343)
+..+|++++++++++++-+..-..++.+|+.|..+-+
T Consensus 137 LttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv 173 (347)
T KOG1442|consen 137 LTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV 173 (347)
T ss_pred hhhhHHHHhHHhhcccccccccceeehhheehheecc
Confidence 9999999999999999999999999999999977654
No 117
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=82.04 E-value=3.1 Score=30.47 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhcccchhHHHHHh-chhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhhe
Q 019311 62 VIDQNLYFIGMKYTTATFAAAMY-NILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 128 (343)
Q Consensus 62 ~~~~~~~~~al~~~~~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~ 128 (343)
-.+..+||.-++.++.+.+..+. ++.-.|+.+.+..+ +|+...+. -+.|..+.++|+.++.
T Consensus 63 qcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~-----a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 63 QCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGL-----ALLGTSLIVFGIWLCI 124 (125)
T ss_pred HhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccce-----eehhhhHHhhhhhhee
Confidence 34467788999999999988887 67888899998866 55554443 3899999999988764
No 118
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=81.85 E-value=17 Score=26.73 Aligned_cols=51 Identities=8% Similarity=0.002 Sum_probs=34.5
Q ss_pred hhcccchhHHHHHh-chhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhh
Q 019311 71 GMKYTTATFAAAMY-NILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVM 127 (343)
Q Consensus 71 al~~~~~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li 127 (343)
|.+.-+.++--+++ ...-..-+.++.+++||++++.. ..|.++.+.++.++
T Consensus 55 G~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~------l~af~~i~~av~fi 106 (108)
T PF04342_consen 55 GYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNY------LWAFLCILGAVYFI 106 (108)
T ss_pred hccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHH------HHHHHHHHHhhhee
Confidence 33445556666666 44444556778889999999997 77777776666554
No 119
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=80.58 E-value=20 Score=26.29 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=40.8
Q ss_pred Hhhcccc-hhHHHHHh-chhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhhee
Q 019311 70 IGMKYTT-ATFAAAMY-NILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL 129 (343)
Q Consensus 70 ~al~~~~-~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~ 129 (343)
..++..+ .+.+-.-+ ....+...+-.+.+.|.++++.+ ++|..++++|+.++..
T Consensus 49 lT~~~~~a~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D------~~Ga~icl~G~~vil~ 104 (109)
T COG1742 49 LTLQPAAAFGRVYAAYGGVYIAASLAWLWVVDGVRPDRYD------WIGAAICLAGVAVILF 104 (109)
T ss_pred HHcCCchhhhhHHHHhcchHHHHHHHHHHHHcCcCCcHHH------hhhHHHHHhceeeeEe
Confidence 3334333 44554444 67777777778889999999998 9999999999888875
No 120
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=80.36 E-value=5.9 Score=29.06 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhccCCceeeeech-hHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhh
Q 019311 238 SGLTYYIQGIVMKDRGPVFVAAFS-PLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 299 (343)
Q Consensus 238 ~~~~~~l~~~a~~~~~~~~~s~~~-~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~ 299 (343)
.-.+..+|+.-+++.+-+.+..+. .+.-.++.+.+..+-.|.....-+.|..++++|+.+..
T Consensus 62 NqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 62 NQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 344566777788888888766654 56778888888765555567778999999999988754
No 121
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=79.90 E-value=5.1 Score=29.32 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=38.7
Q ss_pred eeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccC
Q 019311 257 VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 302 (343)
Q Consensus 257 ~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~ 302 (343)
.+...-.-.+.+.++.+++-|..|+.+.++|.++.++|+.+..+.+
T Consensus 61 YAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 61 YAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 4556667788889999999999999999999999999977776653
No 122
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=78.28 E-value=8 Score=33.79 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=79.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhccCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhch
Q 019311 12 GMSPYVLVVYRHAAATIAMAPFAVILDKKIR-----PKMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNI 86 (343)
Q Consensus 12 ~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~ 86 (343)
+-+..++++.-+.++..+++..+.....-.. ...+++.+-+.++.+..+ .++......=++.-.+..++.+...
T Consensus 217 ~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~g-ylG~~~VLalI~~fGA~~aatvTTa 295 (367)
T KOG1582|consen 217 PASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAG-YLGIVFVLALIKLFGALIAATVTTA 295 (367)
T ss_pred CCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHh-HhhHHHHHHHHHHhchhHHHHHHHh
Confidence 3456778888888888888877765432211 112456666666666666 4444444444455677788888888
Q ss_pred hHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeec
Q 019311 87 LPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIK 131 (343)
Q Consensus 87 ~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~ 131 (343)
--..+.+++++++.++++... .-+..+.+.|+.+=...+
T Consensus 296 RKavTi~lSfllFsKPfT~qy------~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 296 RKAVTILLSFLLFSKPFTEQY------VWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HhHHHHHHHHHHHcCchHHHH------hhhhHHHHHHHHhhcccC
Confidence 888999999999999999887 777778888988877544
No 123
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=76.13 E-value=3.3 Score=30.42 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=25.6
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHhhhhh
Q 019311 269 AIMSTIILAEQMYLGRIIGAIIIIGGLYLV 298 (343)
Q Consensus 269 ~ll~~~~~~e~~~~~~~iG~~li~~G~~l~ 298 (343)
+.++.+.++|++++.+..|.++++.+++..
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 455778899999999999999999887654
No 124
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=75.39 E-value=47 Score=27.76 Aligned_cols=32 Identities=3% Similarity=0.286 Sum_probs=21.7
Q ss_pred HHHHHHHhccccchhhHHHHHHHHH--hhhhhhc
Q 019311 269 AIMSTIILAEQMYLGRIIGAIIIIG--GLYLVVW 300 (343)
Q Consensus 269 ~ll~~~~~~e~~~~~~~iG~~li~~--G~~l~~~ 300 (343)
-.+|..++++..=+....|..+.++ |.+...+
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~ 166 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLAR 166 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4457778888777778888877655 5554444
No 125
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.45 E-value=9 Score=27.66 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=27.4
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHhhhhhhc
Q 019311 269 AIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 300 (343)
Q Consensus 269 ~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~ 300 (343)
+.++.+.++|++.+.++.|.+++..|+.+..+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 44688889999999999999999999887643
No 126
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=62.40 E-value=18 Score=28.16 Aligned_cols=17 Identities=24% Similarity=0.616 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHhhhhhh
Q 019311 283 GRIIGAIIIIGGLYLVV 299 (343)
Q Consensus 283 ~~~iG~~li~~G~~l~~ 299 (343)
..++|..+.+.|++...
T Consensus 88 ~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 88 SIIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35667777777765554
No 127
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=61.90 E-value=8 Score=25.76 Aligned_cols=20 Identities=25% Similarity=0.071 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhhhhhhccCc
Q 019311 284 RIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 284 ~~iG~~li~~G~~l~~~~~~ 303 (343)
-+++++++++|.+++...++
T Consensus 6 iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 46788888888888765443
No 128
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=61.59 E-value=2.5 Score=36.86 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccCCceeeeechh
Q 019311 238 SGLTYYIQGIVMKDRGPVFVAAFSP 262 (343)
Q Consensus 238 ~~~~~~l~~~a~~~~~~~~~s~~~~ 262 (343)
-+++.++|.+.+++.+++.-+++..
T Consensus 118 LaL~vW~Ym~lLr~~GAs~WtiLaF 142 (381)
T PF05297_consen 118 LALGVWFYMWLLRELGASFWTILAF 142 (381)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3556666677788888877665544
No 129
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.22 E-value=73 Score=23.17 Aligned_cols=47 Identities=15% Similarity=0.048 Sum_probs=31.2
Q ss_pred chhHHHHHh-chhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhhe
Q 019311 76 TATFAAAMY-NILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 128 (343)
Q Consensus 76 ~~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~ 128 (343)
+++.--.++ -..-.+-+.++.+.+||++++.. +.+..+...|+.++.
T Consensus 67 s~~QLK~mQEVItL~iFv~Fsvfyl~epl~~~~------l~a~~~i~gav~fiF 114 (116)
T COG3169 67 SAAQLKTMQEVITLAIFVPFSVFYLKEPLRWNY------LWAFLLILGAVYFIF 114 (116)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHH------HHHHHHHHHHHHHhc
Confidence 334333333 23333445678889999999997 888887777777653
No 130
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=57.11 E-value=17 Score=31.91 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=57.8
Q ss_pred HHHHHHHHhhcc-CCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCccCCCC
Q 019311 240 LTYYIQGIVMKD-RGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKS 308 (343)
Q Consensus 240 ~~~~l~~~a~~~-~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~~~~~ 308 (343)
....+.+++++. ++...-.++..-.++...+++|++.|.+.+..|+..++++-+|+++....+.++.+.
T Consensus 76 ~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 76 IVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred eeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 345566777776 566677888899999999999999999999999999999999999998877665543
No 131
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=51.07 E-value=99 Score=29.65 Aligned_cols=23 Identities=9% Similarity=0.398 Sum_probs=19.1
Q ss_pred cchhhHHHHHHHHHhhhhhhccC
Q 019311 280 MYLGRIIGAIIIIGGLYLVVWGK 302 (343)
Q Consensus 280 ~~~~~~iG~~li~~G~~l~~~~~ 302 (343)
++..|++.+.++++|++++.+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 68889999999999988776543
No 132
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=51.03 E-value=3e+02 Score=28.45 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=32.1
Q ss_pred hhHHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhhe
Q 019311 77 ATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 128 (343)
Q Consensus 77 ~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~ 128 (343)
.+.+.++..+.|.-.+.++.+...+|.+... +.+.+-.++|.+-+.
T Consensus 10 lgRa~il~~l~PFg~af~~a~~~~~~~~~~~------~~~~~~~~~G~~t~~ 55 (764)
T TIGR02865 10 LGRAVIVSPMAPFGIAFLAAVLLAKKGGDKA------FFSALGVLLGAISIQ 55 (764)
T ss_pred HhHHHHhcCCCchHHHHHHHHHHhhcccchH------HHHHHHHHHHHHHhC
Confidence 4667788899999999999988766653333 555555666665543
No 133
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=47.22 E-value=1.5e+02 Score=27.29 Aligned_cols=15 Identities=7% Similarity=-0.053 Sum_probs=9.6
Q ss_pred HHHHHHHHhhccccc
Q 019311 91 TFLMAWIIRLENVNL 105 (343)
Q Consensus 91 ~~lla~~~~~e~~~~ 105 (343)
..+++.++++-|..-
T Consensus 3 ~vvl~~I~~GaR~GG 17 (364)
T PF03605_consen 3 IVVLGAIFLGARLGG 17 (364)
T ss_pred hHHHHHHHHhhcccc
Confidence 345667777777643
No 134
>PHA03049 IMV membrane protein; Provisional
Probab=46.06 E-value=18 Score=24.00 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=13.9
Q ss_pred hHHHHHHHHHhhhhhhccCc
Q 019311 284 RIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 284 ~~iG~~li~~G~~l~~~~~~ 303 (343)
-+++++++++|.+++...++
T Consensus 6 ~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 46778888888877754443
No 135
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=44.38 E-value=3.1e+02 Score=26.65 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=8.4
Q ss_pred chhHHHHHHHHHHHHH
Q 019311 188 AELSLTAWICFFGTVE 203 (343)
Q Consensus 188 ~~~~~~~~~~~~~~i~ 203 (343)
.|......+...+.++
T Consensus 330 ~P~~a~~~~~~i~~l~ 345 (507)
T TIGR00910 330 VPVPLVIIQGIITSIA 345 (507)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4565555555555443
No 136
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=43.97 E-value=8.1 Score=23.29 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=8.6
Q ss_pred cchhhHHHHHHHHHhhh
Q 019311 280 MYLGRIIGAIIIIGGLY 296 (343)
Q Consensus 280 ~~~~~~iG~~li~~G~~ 296 (343)
|+|..++=.++|+.|++
T Consensus 2 p~wlt~iFsvvIil~If 18 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIF 18 (49)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 34555555555555543
No 137
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=40.75 E-value=27 Score=27.36 Aligned_cols=26 Identities=8% Similarity=0.167 Sum_probs=18.8
Q ss_pred ccCCceeeeechhHHHHHHHHHHHHH
Q 019311 250 KDRGPVFVAAFSPLCMVIVAIMSTII 275 (343)
Q Consensus 250 ~~~~~~~~s~~~~~~pv~~~ll~~~~ 275 (343)
..-+....+.+.|+.|.++.+++.++
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455567778888888888887765
No 138
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=38.98 E-value=1.5e+02 Score=21.42 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=34.0
Q ss_pred HHhhccCCceeeeechhHHHHHHHHHHHHH---hccc-cchhhHHHHHHHHHhhhhhhccCcc
Q 019311 246 GIVMKDRGPVFVAAFSPLCMVIVAIMSTII---LAEQ-MYLGRIIGAIIIIGGLYLVVWGKSK 304 (343)
Q Consensus 246 ~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~---~~e~-~~~~~~iG~~li~~G~~l~~~~~~~ 304 (343)
..++++++...--.+-.++.++.++++.+. .++. +-...|.|...-+++..+..-..+|
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r 84 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNR 84 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhh
Confidence 456666665555555555566666665442 2322 3333588888888877776544443
No 139
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=38.69 E-value=2.9e+02 Score=24.79 Aligned_cols=42 Identities=10% Similarity=0.034 Sum_probs=27.7
Q ss_pred hHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHH
Q 019311 114 VIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSF 174 (343)
Q Consensus 114 ~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~ 174 (343)
+.++.++..|+..+.. +-+ .........+..+..++.+.|..
T Consensus 7 ~f~~~mGtg~l~~~~~-~~~------------------~~~~~~~~~~~~~~~~~~~l~~~ 48 (330)
T PF03595_consen 7 WFGMVMGTGGLSNLLY-LLP------------------YHFGGLAILSEVLFILALILFLV 48 (330)
T ss_dssp GGHHHHHHHHHHHHHH-TTT------------------TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHH------------------HhccchhHHHHHHHHHHHHHHHH
Confidence 8999999999888872 111 11333455677777777766666
No 140
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=38.53 E-value=24 Score=24.94 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=22.1
Q ss_pred ccchhhHHHHHHHHHhhhhhhccCccCC
Q 019311 279 QMYLGRIIGAIIIIGGLYLVVWGKSKDH 306 (343)
Q Consensus 279 ~~~~~~~iG~~li~~G~~l~~~~~~~~~ 306 (343)
..++..++|.+++++|..++..+..+++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pe 31 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPE 31 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 4678899999999999998876554444
No 141
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=37.26 E-value=59 Score=23.56 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhhhhhcc
Q 019311 285 IIGAIIIIGGLYLVVWG 301 (343)
Q Consensus 285 ~iG~~li~~G~~l~~~~ 301 (343)
.+|+++++=+.+...|+
T Consensus 50 f~Gi~lMlPAav~ivWR 66 (96)
T PF07214_consen 50 FVGIGLMLPAAVNIVWR 66 (96)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555444444454
No 142
>PF15102 TMEM154: TMEM154 protein family
Probab=35.95 E-value=56 Score=25.75 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=8.5
Q ss_pred HHHHHHHHhhhhhhccCcc
Q 019311 286 IGAIIIIGGLYLVVWGKSK 304 (343)
Q Consensus 286 iG~~li~~G~~l~~~~~~~ 304 (343)
+++++++..++++.+.++|
T Consensus 67 LLvlLLl~vV~lv~~~kRk 85 (146)
T PF15102_consen 67 LLVLLLLSVVCLVIYYKRK 85 (146)
T ss_pred HHHHHHHHHHHheeEEeec
Confidence 3344444445555444333
No 143
>PF15345 TMEM51: Transmembrane protein 51
Probab=35.26 E-value=1.1e+02 Score=26.03 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=17.2
Q ss_pred hHHHHHHHhhhhhheeecCcc
Q 019311 114 VIGTLATVAGAMVMTLIKGPI 134 (343)
Q Consensus 114 ~~~~~i~~~Gv~li~~~~~~~ 134 (343)
.+|+.+...|+++++|.--+.
T Consensus 11 AiG~Gml~LGiiM~vW~~VPg 31 (233)
T PF15345_consen 11 AIGVGMLALGIIMIVWNLVPG 31 (233)
T ss_pred HHhHhHHHHhhHheeeeeccc
Confidence 688999999999999875443
No 144
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=34.81 E-value=2.1e+02 Score=24.92 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=14.7
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 019311 157 NSIKGALMITAGCFSWSFFII 177 (343)
Q Consensus 157 ~~~~G~~~~l~a~~~~a~~~i 177 (343)
...-|+.+++++++...++..
T Consensus 37 yY~sg~~lGv~~s~li~~~~~ 57 (249)
T PF10225_consen 37 YYSSGISLGVLASLLILLFQL 57 (249)
T ss_pred HHhhhHHHHHHHHHHHHHHHH
Confidence 445677888887777777753
No 145
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=34.13 E-value=2.8e+02 Score=23.19 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 019311 50 LTKLLLLGLLEPVIDQNLYFIGMKYTTAT 78 (343)
Q Consensus 50 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~ 78 (343)
++..++.++.. .+.+...+......|+.
T Consensus 146 ~~k~~~~~~~~-~~~w~~~~~~~~~lp~~ 173 (206)
T PF06570_consen 146 WWKYILISVLA-MVLWIVIFVLTSFLPPV 173 (206)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHcccc
Confidence 44444444443 33334444444445544
No 146
>PF14851 FAM176: FAM176 family
Probab=32.80 E-value=81 Score=25.15 Aligned_cols=11 Identities=18% Similarity=0.141 Sum_probs=4.8
Q ss_pred ccchhhHHHHH
Q 019311 279 QMYLGRIIGAI 289 (343)
Q Consensus 279 ~~~~~~~iG~~ 289 (343)
++.++.+.|++
T Consensus 21 ~~aLYFv~gVC 31 (153)
T PF14851_consen 21 RFALYFVSGVC 31 (153)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 147
>COG0387 ChaA Ca2+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=31.65 E-value=4.2e+02 Score=24.54 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=16.2
Q ss_pred cccchhhHHHHHHHHHhhhhhhc
Q 019311 278 EQMYLGRIIGAIIIIGGLYLVVW 300 (343)
Q Consensus 278 e~~~~~~~iG~~li~~G~~l~~~ 300 (343)
...+..+-.+++++.++++....
T Consensus 161 ~~~~~~~s~~~avv~i~~Y~lfL 183 (368)
T COG0387 161 GNFSLGQSLFVAVVLIALYGLFL 183 (368)
T ss_pred CcchHhHHHHHHHHHHHHHHHHH
Confidence 34556778888888888776643
No 148
>PF15471 TMEM171: Transmembrane protein family 171
Probab=31.57 E-value=61 Score=28.26 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHhhhhhhccCccCC
Q 019311 282 LGRIIGAIIIIGGLYLVVWGKSKDH 306 (343)
Q Consensus 282 ~~~~iG~~li~~G~~l~~~~~~~~~ 306 (343)
..|++|-++++.|..+.+....|++
T Consensus 161 slQImGPlIVl~GLCFFVVAHvKKr 185 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHVKKR 185 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeeeeec
Confidence 3589999999999888776544443
No 149
>PRK12405 electron transport complex RsxE subunit; Provisional
Probab=30.95 E-value=3.5e+02 Score=23.31 Aligned_cols=23 Identities=13% Similarity=0.390 Sum_probs=12.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q 019311 187 PAELSLTAWICFFGTVEGTLAAL 209 (343)
Q Consensus 187 ~~~~~~~~~~~~~~~i~~~~~~~ 209 (343)
+++.....+..+.+.++...-.+
T Consensus 64 ~~~lRi~v~IlvIA~~V~~v~~~ 86 (231)
T PRK12405 64 PKEIRIPIFVMIIASFVTVVQLL 86 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666655544443
No 150
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=30.45 E-value=2e+02 Score=26.43 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=14.3
Q ss_pred chhhHHHHHHHHHhhhhhhccCc
Q 019311 281 YLGRIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 281 ~~~~~iG~~li~~G~~l~~~~~~ 303 (343)
.+.+.+..+++++.+.+..+.++
T Consensus 287 ~~~~ii~g~lll~vl~~~~~~~~ 309 (344)
T PRK15432 287 WWNDFIAGLVLLGVLVFDGRLRC 309 (344)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHH
Confidence 35567777777776666654433
No 151
>PRK10746 putative transport protein YifK; Provisional
Probab=30.36 E-value=4.9e+02 Score=24.84 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019311 157 NSIKGALMITAGCFSWSFFIILQAITLK 184 (343)
Q Consensus 157 ~~~~G~~~~l~a~~~~a~~~i~~k~~~~ 184 (343)
....|..+.++..+.|-.+....|...+
T Consensus 430 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 457 (461)
T PRK10746 430 SLFVGIIFLLAVTLIYKVFGLNRHGKAH 457 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchh
Confidence 4556777776666667666555444333
No 152
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=30.01 E-value=4.8e+02 Score=24.61 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---hccCCceeeeechhHHHHHHHHHHHHHhcccc---------------chhhHHHHH
Q 019311 228 VASVYSGIICSGLTYYIQGIV---MKDRGPVFVAAFSPLCMVIVAIMSTIILAEQM---------------YLGRIIGAI 289 (343)
Q Consensus 228 ~~l~~~~~~~~~~~~~l~~~a---~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~---------------~~~~~iG~~ 289 (343)
+.-+..|++++.+++....+- .+.-++..+-.+-...=++..++.-++-.+.. =..|++|++
T Consensus 280 ~~A~viG~iag~~~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~g~~~~~~~~~l~~Ql~g~~ 359 (403)
T TIGR00836 280 WGAIIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGVGTGGLLGGNGKQLGVQLIGIA 359 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhhhhHHHHHHHHHHhcccccccccCCccccCcHHHHHHHHHHHH
Confidence 344455665566666555432 33445655555555555666555544433211 113788877
Q ss_pred HHHH
Q 019311 290 IIIG 293 (343)
Q Consensus 290 li~~ 293 (343)
.+++
T Consensus 360 ~~~~ 363 (403)
T TIGR00836 360 AIIA 363 (403)
T ss_pred HHHH
Confidence 7554
No 153
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=29.96 E-value=3.6e+02 Score=23.20 Aligned_cols=114 Identities=12% Similarity=0.080 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhchhHHHHHHHHHH-HhhccccccccccchhhHHHHHHHh
Q 019311 44 KMTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWI-IRLENVNLKSIRSLAKVIGTLATVA 122 (343)
Q Consensus 44 ~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~-~~~e~~~~~~~~~~~k~~~~~i~~~ 122 (343)
..+..........++.+..++..+..++-...+......+..+.-+|..+-... ..|+.++... +. +.+++.
T Consensus 82 s~~~~~~~~~~~t~l~G~tL~~i~~~Y~~~~~~~~i~~af~~t~~~F~~ls~~g~~tk~Dls~l~-----~~--l~~ali 154 (233)
T COG0670 82 SSPTALILFFVYTALVGLTLSPILLVYAAISGGDAIAAAFGITALVFGALSLYGYTTKRDLSSLG-----SF--LFMALI 154 (233)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-----HH--HHHHHH
Confidence 334444444555555555555555555544433335555555555555444332 2344455442 33 344444
Q ss_pred hhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019311 123 GAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKA 185 (343)
Q Consensus 123 Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~ 185 (343)
|+++..+.+- .-...........++.+.|+.+........++
T Consensus 155 gLiiasvvn~---------------------Fl~s~~l~~~IS~lgvlifsgli~yDtq~I~~ 196 (233)
T COG0670 155 GLIIASLVNI---------------------FLGSSALHLAISVLGVLIFSGLIAYDTQNIKR 196 (233)
T ss_pred HHHHHHHHHH---------------------HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444332221 11122566777778888888888877665555
No 154
>PF11361 DUF3159: Protein of unknown function (DUF3159); InterPro: IPR016566 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=29.61 E-value=2.1e+02 Score=23.71 Aligned_cols=71 Identities=13% Similarity=0.154 Sum_probs=42.2
Q ss_pred HHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccch
Q 019311 79 FAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNS 158 (343)
Q Consensus 79 ~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (343)
..+++.+..-......-++..||+++.- ..|.+...++..+... .| +..+..
T Consensus 28 ~~aliaA~~~a~~~~v~RL~r~~~~~~a-------~~gl~gV~i~a~~A~~-tG--------------------~A~~~F 79 (187)
T PF11361_consen 28 TPALIAALAVAVVIVVWRLVRRESVQPA-------LSGLFGVAISAAIAWR-TG--------------------SAKDFF 79 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHH-------HHHHHHHHHHHHHHHH-HC--------------------Chhhhh
Confidence 3445555555555566778888888754 6666655555555442 22 233456
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 019311 159 IKGALMITAGCFSWSFFII 177 (343)
Q Consensus 159 ~~G~~~~l~a~~~~a~~~i 177 (343)
+.|++.-...+..+..+.+
T Consensus 80 l~gi~~n~~~~~~~l~S~l 98 (187)
T PF11361_consen 80 LPGIWTNAVYAVVFLVSVL 98 (187)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777777666666666654
No 155
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.57 E-value=37 Score=25.93 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=6.8
Q ss_pred HHHHHHHHHhhhhhhc
Q 019311 285 IIGAIIIIGGLYLVVW 300 (343)
Q Consensus 285 ~iG~~li~~G~~l~~~ 300 (343)
+.|++++++.+.+..+
T Consensus 74 ~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 74 MAGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444343333
No 156
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=29.36 E-value=93 Score=21.36 Aligned_cols=10 Identities=40% Similarity=0.328 Sum_probs=4.9
Q ss_pred HHHHHHHHHh
Q 019311 285 IIGAIIIIGG 294 (343)
Q Consensus 285 ~iG~~li~~G 294 (343)
++|+.+++..
T Consensus 9 i~Gm~iVF~~ 18 (79)
T PF04277_consen 9 IIGMGIVFLV 18 (79)
T ss_pred HHHHHHHHHH
Confidence 4455555444
No 157
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=29.17 E-value=69 Score=17.77 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=8.6
Q ss_pred cchhhHHHHHHHHHhhh
Q 019311 280 MYLGRIIGAIIIIGGLY 296 (343)
Q Consensus 280 ~~~~~~iG~~li~~G~~ 296 (343)
-++..++|.+++..+.+
T Consensus 10 ~~~~~~~G~~l~~~~~~ 26 (34)
T TIGR01167 10 NSLLLLLGLLLLGLGGL 26 (34)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34556667744444333
No 158
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=29.01 E-value=43 Score=25.91 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=14.7
Q ss_pred eeeeechhHHHHHHHHHHHHH
Q 019311 255 VFVAAFSPLCMVIVAIMSTII 275 (343)
Q Consensus 255 ~~~s~~~~~~pv~~~ll~~~~ 275 (343)
...+.+.|.-|++.++++.++
T Consensus 68 ~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 68 LKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888877654
No 159
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=28.07 E-value=2e+02 Score=28.10 Aligned_cols=28 Identities=14% Similarity=0.110 Sum_probs=13.6
Q ss_pred ccccchhhHHHHHHHHHhhhhhhccCcc
Q 019311 277 AEQMYLGRIIGAIIIIGGLYLVVWGKSK 304 (343)
Q Consensus 277 ~e~~~~~~~iG~~li~~G~~l~~~~~~~ 304 (343)
++.+++.-.+....++.+++.+...++|
T Consensus 485 ~~~MNya~VV~gg~~lf~li~~~~~~~k 512 (550)
T KOG1289|consen 485 ADNMNYACVVYGGVMLFCLIYYFVSARK 512 (550)
T ss_pred cccCceEEEeehhhhhhhhheeeeecce
Confidence 3445555555555555554444333333
No 160
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=27.68 E-value=6.3e+02 Score=25.28 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=15.4
Q ss_pred chhhHHHHHHHhhhhhhee
Q 019311 111 LAKVIGTLATVAGAMVMTL 129 (343)
Q Consensus 111 ~~k~~~~~i~~~Gv~li~~ 129 (343)
+..|+|.++...|..++++
T Consensus 238 ~lD~IG~~L~~~Gl~LfLl 256 (599)
T PF06609_consen 238 ELDWIGIFLFIAGLALFLL 256 (599)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3348999999999888774
No 161
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=27.48 E-value=4.9e+02 Score=23.91 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=9.7
Q ss_pred hHHHHHHHHHhhhhhh
Q 019311 284 RIIGAIIIIGGLYLVV 299 (343)
Q Consensus 284 ~~iG~~li~~G~~l~~ 299 (343)
..++.++.+.++.+..
T Consensus 372 f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 372 YLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666655553
No 162
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=27.44 E-value=50 Score=19.68 Aligned_cols=17 Identities=41% Similarity=0.942 Sum_probs=9.1
Q ss_pred HHHHHHHHhhhhhhccC
Q 019311 286 IGAIIIIGGLYLVVWGK 302 (343)
Q Consensus 286 iG~~li~~G~~l~~~~~ 302 (343)
+|.++++.+.+++.+++
T Consensus 21 V~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYR 37 (40)
T ss_pred hHHHHHHHHHHhheEEe
Confidence 34555566666664443
No 163
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=27.27 E-value=3.1e+02 Score=21.58 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=23.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019311 156 HNSIKGALMITAGCFSWSFFIILQAITLK 184 (343)
Q Consensus 156 ~~~~~G~~~~l~a~~~~a~~~i~~k~~~~ 184 (343)
.......+..+++++.|.-|...+||..+
T Consensus 117 ~~~i~~l~~~li~a~IwipYf~~S~RVK~ 145 (149)
T PF10754_consen 117 AEAIRELLRSLIAAAIWIPYFLRSKRVKN 145 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 34567888999999999999998888543
No 164
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=27.26 E-value=74 Score=24.26 Aligned_cols=28 Identities=7% Similarity=0.102 Sum_probs=14.4
Q ss_pred HHHhccccchhh----HHHHHHHHHhhhhhhc
Q 019311 273 TIILAEQMYLGR----IIGAIIIIGGLYLVVW 300 (343)
Q Consensus 273 ~~~~~e~~~~~~----~iG~~li~~G~~l~~~ 300 (343)
|++-.|..+.+. .+.++++++|++++.+
T Consensus 25 W~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgr 56 (125)
T PF15048_consen 25 WFFRVEDATPWNYSILALSFVVLVISFFLLGR 56 (125)
T ss_pred HheecCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 344456666552 2344455556666543
No 165
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=26.40 E-value=3.8e+02 Score=22.24 Aligned_cols=69 Identities=9% Similarity=-0.025 Sum_probs=37.4
Q ss_pred HHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHH
Q 019311 97 IIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFI 176 (343)
Q Consensus 97 ~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~ 176 (343)
++.+-+=+..+||+..|.+.......-+.+.+..-.... ..+-+..+-.+.+.++++...|+-.
T Consensus 147 y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v~i~t~~l----------------PtslN~~L~pi~l~IiGav~lalRf 210 (226)
T COG4858 147 YAYRMRADNSQRPGTWKYLLVAVLSMLLWIAVMIATVFL----------------PTSLNPQLPPIALTIIGAVILALRF 210 (226)
T ss_pred HHHHhhcccccCCchHHHHHHHHHHHHHHHHHHHHHhhC----------------CCcCCcCCchHHHHHHHHHHHHHHH
Confidence 334444456667776677666655554444432111000 1122334556778888888888877
Q ss_pred HHHHH
Q 019311 177 ILQAI 181 (343)
Q Consensus 177 i~~k~ 181 (343)
.+.|+
T Consensus 211 ylkkk 215 (226)
T COG4858 211 YLKKK 215 (226)
T ss_pred HHHHh
Confidence 65554
No 166
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=26.23 E-value=6.3e+02 Score=24.74 Aligned_cols=17 Identities=6% Similarity=-0.152 Sum_probs=9.1
Q ss_pred echhHHHHHHHHHHHHH
Q 019311 259 AFSPLCMVIVAIMSTII 275 (343)
Q Consensus 259 ~~~~~~pv~~~ll~~~~ 275 (343)
......|+-+.++|.+.
T Consensus 351 ~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344566666666544
No 167
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=25.18 E-value=4.1e+02 Score=22.21 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=7.5
Q ss_pred hHHHHHHHhhhhhhe
Q 019311 114 VIGTLATVAGAMVMT 128 (343)
Q Consensus 114 ~~~~~i~~~Gv~li~ 128 (343)
++++...+.|+....
T Consensus 89 ~~~if~~~~gi~~~f 103 (206)
T PF06570_consen 89 FFGIFSLLFGIMGFF 103 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555443
No 168
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=25.14 E-value=3.9e+02 Score=22.02 Aligned_cols=32 Identities=13% Similarity=0.401 Sum_probs=22.4
Q ss_pred HHHHHHHhccccchhhHHHHHHHHH--hhhhhhc
Q 019311 269 AIMSTIILAEQMYLGRIIGAIIIIG--GLYLVVW 300 (343)
Q Consensus 269 ~ll~~~~~~e~~~~~~~iG~~li~~--G~~l~~~ 300 (343)
-.+|..++.|-.-+....|..+.++ |.+...+
T Consensus 132 ~~iG~~Lyt~Y~l~fe~~s~lLLvAmIGAIvLa~ 165 (186)
T MTH00057 132 EVLGRVLYTDYYYLFILASFILLVAMIGAIVLTH 165 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4557788888888888888877665 4444444
No 169
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=25.01 E-value=6.1e+02 Score=24.18 Aligned_cols=62 Identities=6% Similarity=0.005 Sum_probs=37.1
Q ss_pred HHhhccccccccccchhhHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHH
Q 019311 97 IIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFI 176 (343)
Q Consensus 97 ~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~ 176 (343)
++-|.++++.| ++-++++.+=-.++.+ +-++....+....+.|+.|-+.-.
T Consensus 317 ~~~~~~iHpiQ------Y~LVGlAl~lFYlLLL-----------------------SlSEhi~F~~AYliAa~a~i~Li~ 367 (430)
T PF06123_consen 317 LLSKLRIHPIQ------YLLVGLALVLFYLLLL-----------------------SLSEHIGFNLAYLIAALACIGLIS 367 (430)
T ss_pred HHhcCcccHHH------HHHHHHHHHHHHHHHH-----------------------HHHhhhchHHHHHHHHHHHHHHHH
Confidence 45577788776 7655555554444442 123344556666677777777777
Q ss_pred HHHHHHHhhCC
Q 019311 177 ILQAITLKAYP 187 (343)
Q Consensus 177 i~~k~~~~~~~ 187 (343)
...+...++..
T Consensus 368 ~Y~~~vl~~~k 378 (430)
T PF06123_consen 368 LYLSSVLKSWK 378 (430)
T ss_pred HHHHHHHhcch
Confidence 77777776543
No 170
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=24.61 E-value=1.7e+02 Score=22.08 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=7.5
Q ss_pred hHHHHHHHhhhhhhe
Q 019311 114 VIGTLATVAGAMVMT 128 (343)
Q Consensus 114 ~~~~~i~~~Gv~li~ 128 (343)
++|.++.++|..+..
T Consensus 52 i~G~~li~~g~l~~~ 66 (115)
T PF05915_consen 52 IFGTVLIIIGLLLFF 66 (115)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555555554444
No 171
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein. These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively.
Probab=24.52 E-value=6.2e+02 Score=24.09 Aligned_cols=13 Identities=8% Similarity=0.112 Sum_probs=7.7
Q ss_pred HHHHHHHhhcccc
Q 019311 92 FLMAWIIRLENVN 104 (343)
Q Consensus 92 ~lla~~~~~e~~~ 104 (343)
.++++++.+-|..
T Consensus 4 ~~~~~~~~g~r~g 16 (430)
T TIGR00770 4 IVLLCIFLGARLG 16 (430)
T ss_pred hHHHHHHHHHhhh
Confidence 4556667666653
No 172
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=24.33 E-value=1.8e+02 Score=22.96 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=27.4
Q ss_pred cchhHHHHHhchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhh
Q 019311 75 TTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM 125 (343)
Q Consensus 75 ~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~ 125 (343)
-+.-.++.+.++.|+++.+++.++. +.+...+ .+.++.++.|..
T Consensus 72 kslL~sA~LvYi~PL~~l~v~~~La-~~L~~~e------~~~~~~~~lg~~ 115 (150)
T COG3086 72 KSLLKSALLVYIFPLVGLFLGAILA-QYLFFSE------LIVIFGAFLGLA 115 (150)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhh------HHHHHHHHHHHH
Confidence 3455678888999999999888663 3333333 444444444433
No 173
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=24.17 E-value=2e+02 Score=18.35 Aligned_cols=44 Identities=27% Similarity=0.320 Sum_probs=32.7
Q ss_pred hHHHHHHHhhhhhheeecCcccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019311 114 VIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKA 185 (343)
Q Consensus 114 ~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~ 185 (343)
.+|..+.++|++++... | .|.+..+++-...|......|+..++
T Consensus 6 v~G~~lv~~Gii~~~lP-G---------------------------pG~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 6 VLGWVLVVAGIIMLPLP-G---------------------------PGLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hHHHHHHHHHHHhhcCC-C---------------------------CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 78888999998888731 1 26667777777888888877776654
No 174
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=24.07 E-value=98 Score=18.29 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHhhhhh
Q 019311 265 MVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLV 298 (343)
Q Consensus 265 pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~ 298 (343)
|+.+.+.+.+++=-+--.+..+|.-+++.|+.-.
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~lgL 34 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLLGL 34 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666766665555566788888888887643
No 175
>PF15345 TMEM51: Transmembrane protein 51
Probab=23.97 E-value=57 Score=27.82 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhhhhccCccCCC
Q 019311 285 IIGAIIIIGGLYLVVWGKSKDHK 307 (343)
Q Consensus 285 ~iG~~li~~G~~l~~~~~~~~~~ 307 (343)
..|+++.++.+++..+.|+|.+.
T Consensus 66 G~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 66 GSGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Confidence 45778888888888876665443
No 176
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=23.79 E-value=1.8e+02 Score=20.76 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhcc
Q 019311 225 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 301 (343)
Q Consensus 225 ~~~~~l~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~ 301 (343)
..|..-+.++++..++.....+|-.... .....+-=+++..+|..++++|.++..+.
T Consensus 30 p~W~~p~m~~lmllGL~WiVvyYi~~~~--------------------i~pi~~lG~WN~~IGfg~~~~Gf~mt~rW 86 (87)
T PF06781_consen 30 PRWYAPLMLGLMLLGLLWIVVYYISGGQ--------------------IPPIPDLGNWNLAIGFGLMIVGFLMTMRW 86 (87)
T ss_pred CccHHHHHHHHHHHHHHHHhhhhcccCC--------------------CCCcccccchHHHHHHHHHHHHHHHHccc
Confidence 3566666666665566666555533332 01112222678899999999998877654
No 177
>PRK10263 DNA translocase FtsK; Provisional
Probab=23.70 E-value=9.1e+02 Score=26.81 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=8.5
Q ss_pred hHHHHHHHhhhhhhe
Q 019311 114 VIGTLATVAGAMVMT 128 (343)
Q Consensus 114 ~~~~~i~~~Gv~li~ 128 (343)
..++++.++++++++
T Consensus 25 ~~gIlLlllAlfL~l 39 (1355)
T PRK10263 25 ALLILIVLFAVWLMA 39 (1355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666655543
No 178
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=23.46 E-value=6.3e+02 Score=24.47 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=25.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHH
Q 019311 157 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWI 196 (343)
Q Consensus 157 ~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~ 196 (343)
....|.+....+.+.-....++.++..+..++..+...-+
T Consensus 285 ~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q 324 (493)
T KOG1330|consen 285 TLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQ 324 (493)
T ss_pred chhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHH
Confidence 3456667777777777778888888777666433333333
No 179
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.09 E-value=2.2e+02 Score=21.26 Aligned_cols=38 Identities=13% Similarity=-0.045 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhccc-cchhh-HHHHHHHHHhhhhhhcc
Q 019311 264 CMVIVAIMSTIILAEQ-MYLGR-IIGAIIIIGGLYLVVWG 301 (343)
Q Consensus 264 ~pv~~~ll~~~~~~e~-~~~~~-~iG~~li~~G~~l~~~~ 301 (343)
-.++.+.++|++-+-. -+++. ++..++-+++.++.+++
T Consensus 55 GilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~R 94 (116)
T COG5336 55 GILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVLR 94 (116)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777652211 22333 33444444444444443
No 180
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=20.71 E-value=4.4e+02 Score=21.03 Aligned_cols=61 Identities=13% Similarity=0.314 Sum_probs=37.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhccCC------CCC------CCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019311 12 GMSPYVLVVYRHAAATIAMAPFAVILDKKI------RPK------MTLAILTKLLLLGLLEPVIDQNLYFIGMKY 74 (343)
Q Consensus 12 ~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~------~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~al~~ 74 (343)
-++|.++.++.++.-....+.+.. ++.. +|+ .+++.+...+..|+.........|+..+..
T Consensus 3 Pl~~~qiL~inli~d~~~a~al~~--e~~~~~im~r~Pr~~~~~l~~~~~~~~i~~~g~~~~~~~~~~f~~~~~~ 75 (182)
T PF00689_consen 3 PLTPIQILWINLITDLLPALALGF--EPPDPDIMKRPPRDPNEPLINKRLLRRILIQGLIMAAACFFAFFLGLYI 75 (182)
T ss_dssp SS-HHHHHHHHHTTTHHHHHHGGG--SS-STTGGGS---TTTS-SSSHHHHHHHCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhc--CcchhhhhhccccccchhhccHHhHhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 367888888888765554443332 2111 222 467778888888888767777777777763
No 181
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=20.55 E-value=8.7e+02 Score=24.34 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019311 195 WICFFGTVEGTLAALIM 211 (343)
Q Consensus 195 ~~~~~~~i~~~~~~~~~ 211 (343)
.+.+.+++....+.-++
T Consensus 449 ~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 449 IRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 45555555555554433
No 182
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=20.45 E-value=7.3e+02 Score=23.41 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=23.7
Q ss_pred chhHHHHH-HHHHHHh-hccccccccccchhhHHHHHHHhhhhhhee
Q 019311 85 NILPAITF-LMAWIIR-LENVNLKSIRSLAKVIGTLATVAGAMVMTL 129 (343)
Q Consensus 85 ~~~p~~~~-lla~~~~-~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~ 129 (343)
...|-+.. +++.++. +=+.+.|. ++..++..+|.+++..
T Consensus 68 di~P~l~~Kl~aP~fi~~v~y~~Ri------~~~~~l~~~g~l~va~ 108 (402)
T PF02487_consen 68 DILPSLLVKLIAPFFIHRVPYWIRI------LICVALSAAGMLLVAF 108 (402)
T ss_pred HHHHHHHHHHHhHhhhhhccchHHH------HHHHHHHHHHHhheee
Confidence 55565554 4444443 33445555 7778888888888773
No 183
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=20.44 E-value=81 Score=26.53 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=25.7
Q ss_pred eeeeechhHHHHHHHHHHHHHhccccc-hhhHHHH-HHHHHhhhhhh
Q 019311 255 VFVAAFSPLCMVIVAIMSTIILAEQMY-LGRIIGA-IIIIGGLYLVV 299 (343)
Q Consensus 255 ~~~s~~~~~~pv~~~ll~~~~~~e~~~-~~~~iG~-~li~~G~~l~~ 299 (343)
...+.+....|..+..++..+-+-.+. +.+|+|. ++++.|.....
T Consensus 34 l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 34 LIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 345555566777777777665443333 3455554 45556766554
No 184
>KOG4320 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.42 E-value=5.7e+02 Score=22.16 Aligned_cols=48 Identities=8% Similarity=0.020 Sum_probs=28.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Q 019311 156 HNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVE 203 (343)
Q Consensus 156 ~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~ 203 (343)
.....|..+++.++..|........+...-.........++...+.+.
T Consensus 117 ~VH~~ga~laF~~g~LY~~~Qa~LSy~~~p~~~~~~v~~iR~~lavi~ 164 (253)
T KOG4320|consen 117 IVHDIGAVLAFGAGLLYMWFQAILSYQRDPNIPTLIVFYIRLVLAVIC 164 (253)
T ss_pred hhhhhhhhHHhcchHHHHHHHHHHHhccCCCcccchhhHHHHHHHHHH
Confidence 345678889998888888766654443222222344455555555444
No 185
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=20.40 E-value=8e+02 Score=23.84 Aligned_cols=49 Identities=8% Similarity=-0.052 Sum_probs=25.1
Q ss_pred HHHHhchhHHHHHHHHHHH--hhccccc-cccccchhhHHHHHHHhhhhhhe
Q 019311 80 AAAMYNILPAITFLMAWII--RLENVNL-KSIRSLAKVIGTLATVAGAMVMT 128 (343)
Q Consensus 80 ~~~i~~~~p~~~~lla~~~--~~e~~~~-~~~~~~~k~~~~~i~~~Gv~li~ 128 (343)
++-+++++|+++.+++.++ +=.|..+ ++.|+.++-.++.+.++|+..+.
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~ 361 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCI 361 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4566788888887776542 1111111 11234444555666666655433
No 186
>PRK10655 potE putrescine transporter; Provisional
Probab=20.33 E-value=7.2e+02 Score=23.31 Aligned_cols=17 Identities=12% Similarity=0.299 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q 019311 158 SIKGALMITAGCFSWSF 174 (343)
Q Consensus 158 ~~~G~~~~l~a~~~~a~ 174 (343)
...|..+.+.+...|+.
T Consensus 410 ~~~~~~~~~~g~~~y~~ 426 (438)
T PRK10655 410 MLYGSIVTFLGWTLYGL 426 (438)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666666655554
No 187
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=20.26 E-value=4.7e+02 Score=21.10 Aligned_cols=61 Identities=15% Similarity=0.068 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHhhhhhh
Q 019311 239 GLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAE-QMYLGRIIGAIIIIGGLYLVV 299 (343)
Q Consensus 239 ~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~e-~~~~~~~iG~~li~~G~~l~~ 299 (343)
..++..|...-....+-....+..++-+....++.+++++ .+......+..+-++...+..
T Consensus 62 iSa~lvW~~~~~~~~~~~~~~ly~~ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l~i 123 (161)
T COG3476 62 ISAYLVWEKGPGQGTSWLLMFLYLLQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVLTI 123 (161)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHH
Confidence 4455555554444334444555558889999999999988 577777777766555544443
No 188
>PRK11715 inner membrane protein; Provisional
Probab=20.24 E-value=7.6e+02 Score=23.58 Aligned_cols=30 Identities=7% Similarity=-0.056 Sum_probs=18.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 019311 157 NSIKGALMITAGCFSWSFFIILQAITLKAY 186 (343)
Q Consensus 157 ~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~ 186 (343)
....+....+.|+.|-..-........+..
T Consensus 354 HigF~~AYliAa~a~v~li~~Y~~~vl~~~ 383 (436)
T PRK11715 354 HIGFTLAYLIAALACVLLIGFYLSAVLRSW 383 (436)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555666666666666666666666654
No 189
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=20.14 E-value=1.9e+02 Score=16.76 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 019311 158 SIKGALMITAGCFSWSFFIIL 178 (343)
Q Consensus 158 ~~~G~~~~l~a~~~~a~~~i~ 178 (343)
..+-.++-++.+..|+.|++.
T Consensus 4 RlliVl~Pil~A~~Wa~fNIg 24 (36)
T CHL00196 4 RLLVIAAPVLAAASWALFNIG 24 (36)
T ss_pred hHHHHHHHHHHHHHHHHHHhH
Confidence 345567778889999999975
Done!