Query 019311
Match_columns 343
No_of_seqs 188 out of 1949
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 14:08:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.2 1.8E-11 6.1E-16 94.6 6.1 71 232-302 34-105 (137)
2 3b5d_A Multidrug transporter E 98.7 2.4E-08 8.1E-13 74.4 7.5 70 232-301 34-104 (110)
3 3b5d_A Multidrug transporter E 98.6 1E-06 3.5E-11 65.5 11.7 69 55-129 34-103 (110)
4 2i68_A Protein EMRE; transmemb 98.5 3E-07 1E-11 70.8 8.3 71 54-130 33-104 (137)
5 3l1l_A Arginine/agmatine antip 51.1 47 0.0016 29.9 8.0 45 262-306 388-432 (445)
6 2zxe_G FXYD10, phospholemman-l 28.9 34 0.0012 22.4 2.2 21 284-304 24-44 (74)
7 4aps_A DI-OR tripeptide H+ sym 27.4 3.3E+02 0.011 24.2 11.7 167 151-318 315-488 (491)
8 3rko_J NADH-quinone oxidoreduc 21.5 3E+02 0.01 21.6 12.8 33 269-301 127-161 (184)
9 2jo1_A Phospholemman; FXYD1, N 19.4 91 0.0031 20.2 2.7 33 285-317 22-58 (72)
10 2jwa_A Receptor tyrosine-prote 12.3 86 0.0029 18.3 1.2 23 288-310 22-44 (44)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.20 E-value=1.8e-11 Score=94.61 Aligned_cols=71 Identities=18% Similarity=0.326 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeec-hhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccC
Q 019311 232 YSGIICSGLTYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 302 (343)
Q Consensus 232 ~~~~~~~~~~~~l~~~a~~~~~~~~~s~~-~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~ 302 (343)
.+++++++++++++.+++++.+++++..+ ..+.|++++++++++++|++++.+++|+++|++|+++..+.+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35666789999999999999999999998 899999999999999999999999999999999999987643
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.75 E-value=2.4e-08 Score=74.40 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeec-hhHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhcc
Q 019311 232 YSGIICSGLTYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 301 (343)
Q Consensus 232 ~~~~~~~~~~~~l~~~a~~~~~~~~~s~~-~~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~ 301 (343)
..++++.++++.++.+++++.|.+.+-.+ ..+.|+++.+++++++||++++.+++|++++++|+++....
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35566788999999999999999999888 89999999999999999999999999999999999988754
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.56 E-value=1e-06 Score=65.50 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHH-hchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhhee
Q 019311 55 LLGLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL 129 (343)
Q Consensus 55 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~ 129 (343)
+.+++...+++.++..++++.|.+.+..+ .++.|+++.+++++++||++++.+ ++|+.+.++|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 56666668999999999999999999888 699999999999999999999997 9999999999999874
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.53 E-value=3e-07 Score=70.83 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHH-hchhHHHHHHHHHHHhhccccccccccchhhHHHHHHHhhhhhheee
Q 019311 54 LLLGLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLI 130 (343)
Q Consensus 54 ~~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~i~~~Gv~li~~~ 130 (343)
.+.+++...+++.++..++++.+++.+..+ .++.|+++.++++++++|++++.+ ++|++++++|++++...
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINLL 104 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhcC
Confidence 356666669999999999999999999888 799999999999999999999998 99999999999998743
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=51.11 E-value=47 Score=29.85 Aligned_cols=45 Identities=4% Similarity=-0.085 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHhccccchhhHHHHHHHHHhhhhhhccCccCC
Q 019311 262 PLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDH 306 (343)
Q Consensus 262 ~~~pv~~~ll~~~~~~e~~~~~~~iG~~li~~G~~l~~~~~~~~~ 306 (343)
..-++++.+...+..-.......+.|..+++.|+.++.+.+++++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 388 LAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344455554444433222223456688888888887766554433
No 6
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=28.93 E-value=34 Score=22.38 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhhhhhhccCcc
Q 019311 284 RIIGAIIIIGGLYLVVWGKSK 304 (343)
Q Consensus 284 ~~iG~~li~~G~~l~~~~~~~ 304 (343)
-++++++.+.|++++..++-|
T Consensus 24 LifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC--
T ss_pred chhHHHHHHHHHHHHHcCccc
Confidence 356667777787777655433
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=27.36 E-value=3.3e+02 Score=24.18 Aligned_cols=167 Identities=10% Similarity=-0.157 Sum_probs=0.0
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHccCCccceeecchhhHHHH
Q 019311 151 SGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVAS 230 (343)
Q Consensus 151 ~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (343)
+.+............+...+.-.....+.+|..++................+........... ................
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 393 (491)
T 4aps_A 315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGAL-YGTSGKVSPLWLVGSW 393 (491)
T ss_dssp CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHH-CCCCTTCCTHHHHHHH
T ss_pred ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCccHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCceeeeechhHHHHHHHHHHHH-------HhccccchhhHHHHHHHHHhhhhhhccCc
Q 019311 231 VYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTI-------ILAEQMYLGRIIGAIIIIGGLYLVVWGKS 303 (343)
Q Consensus 231 ~~~~~~~~~~~~~l~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~-------~~~e~~~~~~~iG~~li~~G~~l~~~~~~ 303 (343)
+..++.........+.+..+..+....+....+.-....+-+.+ +.+.......++-.++.+++.++.....+
T Consensus 394 ~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 394 ALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCCCCCCCCCCCC
Q 019311 304 KDHKSPSPSTDEHLP 318 (343)
Q Consensus 304 ~~~~~~~~~~~~~~~ 318 (343)
+.++..++++++++.
T Consensus 474 ~~~~~~~~~~~~~~~ 488 (491)
T 4aps_A 474 RIQGLMQGVEGSENL 488 (491)
T ss_dssp ---------------
T ss_pred HHHHHHhcccccccc
No 8
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=21.52 E-value=3e+02 Score=21.61 Aligned_cols=33 Identities=6% Similarity=0.128 Sum_probs=24.2
Q ss_pred HHHHHHHhccccchhhHHHHHHHHH--hhhhhhcc
Q 019311 269 AIMSTIILAEQMYLGRIIGAIIIIG--GLYLVVWG 301 (343)
Q Consensus 269 ~ll~~~~~~e~~~~~~~iG~~li~~--G~~l~~~~ 301 (343)
--+|..++++..=+.+..+..+.++ |.+...++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr 161 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGRE 161 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888999888889999888754 55555443
No 9
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=19.39 E-value=91 Score=20.17 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhcc----CccCCCCCCCCCCCCC
Q 019311 285 IIGAIIIIGGLYLVVWG----KSKDHKSPSPSTDEHL 317 (343)
Q Consensus 285 ~iG~~li~~G~~l~~~~----~~~~~~~~~~~~~~~~ 317 (343)
++++++.++|++++..+ +.++++.+.+++++..
T Consensus 22 ifA~vLfi~GI~iilS~KckCk~~qk~r~~~p~~e~g 58 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEEG 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSSSCCCTTTS
T ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCCCCCCccccc
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=12.33 E-value=86 Score=18.30 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhccCccCCCCCC
Q 019311 288 AIIIIGGLYLVVWGKSKDHKSPS 310 (343)
Q Consensus 288 ~~li~~G~~l~~~~~~~~~~~~~ 310 (343)
.+++++|..+..+.+++..+++|
T Consensus 22 ll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 22 LLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHHhheehhhhhccC
Done!