Query 019311
Match_columns 343
No_of_seqs 188 out of 1949
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 14:08:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019311.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019311hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 47.0 68 0.005 25.9 14.7 36 169-205 69-104 (447)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 44.8 13 0.00092 17.4 2.8 19 159-177 2-20 (27)
3 d1iwga8 f.35.1.1 (A:513-566,A: 14.1 2.3E+02 0.016 20.8 9.7 29 266-294 95-123 (222)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 13.0 91 0.0066 15.7 3.9 23 154-176 13-35 (37)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 8.9 4.5E+02 0.033 21.1 21.8 27 51-77 196-222 (383)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 6.1 5.6E+02 0.041 19.6 19.1 16 241-256 361-376 (447)
7 d2nr9a1 f.51.1.1 (A:4-192) Glp 5.7 4.5E+02 0.033 18.2 8.5 20 157-176 161-180 (189)
8 d1v54m_ f.23.7.1 (M:) Mitochon 5.6 1.6E+02 0.011 15.7 1.7 14 113-126 15-28 (43)
9 d2iuba2 f.17.3.1 (A:286-349) M 4.9 2.3E+02 0.017 16.0 2.5 9 284-292 44-52 (64)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 4.6 1.2E+02 0.0088 18.9 1.0 14 290-303 30-43 (91)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=46.98 E-value=68 Score=25.91 Aligned_cols=36 Identities=3% Similarity=-0.078 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Q 019311 169 CFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGT 205 (343)
Q Consensus 169 ~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i~~~ 205 (343)
.+.+++.....-.+.++.+. -.......+...+..+
T Consensus 69 ~~~~~~~~~~~G~l~Dr~g~-r~~~~~~~~~~~~~~~ 104 (447)
T d1pw4a_ 69 SIAYGFSKFIMGSVSDRSNP-RVFLPAGLILAAAVML 104 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHh
Confidence 44455555666666777753 3333333333333333
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=44.75 E-value=13 Score=17.36 Aligned_cols=19 Identities=16% Similarity=0.322 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 019311 159 IKGALMITAGCFSWSFFII 177 (343)
Q Consensus 159 ~~G~~~~l~a~~~~a~~~i 177 (343)
.+|.+...+++++|+.|.-
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 4688888999999998864
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=14.11 E-value=2.3e+02 Score=20.78 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHh
Q 019311 266 VIVAIMSTIILAEQMYLGRIIGAIIIIGG 294 (343)
Q Consensus 266 v~~~ll~~~~~~e~~~~~~~iG~~li~~G 294 (343)
+...+.+..+.+.+++....+|.++.+.-
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 44555666678999999888887775553
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.04 E-value=91 Score=15.67 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=16.4
Q ss_pred CccchhHHHHHHHHHHHHHHHHH
Q 019311 154 TTHNSIKGALMITAGCFSWSFFI 176 (343)
Q Consensus 154 ~~~~~~~G~~~~l~a~~~~a~~~ 176 (343)
....-.+|.++.+.-++.++.|.
T Consensus 13 NrtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 13 NRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHh
Confidence 33445678888888888887774
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=8.94 E-value=4.5e+02 Score=21.08 Aligned_cols=27 Identities=15% Similarity=0.004 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccch
Q 019311 51 TKLLLLGLLEPVIDQNLYFIGMKYTTA 77 (343)
Q Consensus 51 ~~~~~~g~~~~~~~~~~~~~al~~~~~ 77 (343)
..+..+|.+.....+..++-+-.....
T Consensus 196 ~~~~~lG~~iLw~gW~gFN~gs~~~~~ 222 (383)
T d1u7ga_ 196 LPMVFTGTAILYIGWFGFNAGSAGTAN 222 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSSSS
T ss_pred hhhhhHHHHHHHHHHHHhccccccccc
Confidence 344556666657778888877766543
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.05 E-value=5.6e+02 Score=19.64 Aligned_cols=16 Identities=6% Similarity=-0.216 Sum_probs=7.5
Q ss_pred HHHHHHHhhccCCcee
Q 019311 241 TYYIQGIVMKDRGPVF 256 (343)
Q Consensus 241 ~~~l~~~a~~~~~~~~ 256 (343)
....+....+..+...
T Consensus 361 ~~~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 361 VMLIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHHcCHHH
Confidence 3334445555555443
No 7
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=5.72 E-value=4.5e+02 Score=18.18 Aligned_cols=20 Identities=10% Similarity=0.056 Sum_probs=13.7
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 019311 157 NSIKGALMITAGCFSWSFFI 176 (343)
Q Consensus 157 ~~~~G~~~~l~a~~~~a~~~ 176 (343)
....|.+.++++++.++...
T Consensus 161 v~~~aHl~G~l~G~~~g~~~ 180 (189)
T d2nr9a1 161 MGNAAHISGLIVGLIWGFID 180 (189)
T ss_dssp TCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34467888888888776543
No 8
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.64 E-value=1.6e+02 Score=15.67 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=8.9
Q ss_pred hhHHHHHHHhhhhh
Q 019311 113 KVIGTLATVAGAMV 126 (343)
Q Consensus 113 k~~~~~i~~~Gv~l 126 (343)
+.+|+.+++++.+.
T Consensus 15 ~aigLt~~f~~~L~ 28 (43)
T d1v54m_ 15 QAIGLSVTFLSFLL 28 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 56777776666543
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.89 E-value=2.3e+02 Score=15.97 Aligned_cols=9 Identities=11% Similarity=0.357 Sum_probs=3.4
Q ss_pred hHHHHHHHH
Q 019311 284 RIIGAIIII 292 (343)
Q Consensus 284 ~~iG~~li~ 292 (343)
-.++..+++
T Consensus 44 ~~~~~~~~~ 52 (64)
T d2iuba2 44 VVLAVMGVI 52 (64)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=4.60 E-value=1.2e+02 Score=18.91 Aligned_cols=14 Identities=14% Similarity=-0.363 Sum_probs=6.2
Q ss_pred HHHHhhhhhhccCc
Q 019311 290 IIIGGLYLVVWGKS 303 (343)
Q Consensus 290 li~~G~~l~~~~~~ 303 (343)
+++.|.+++...+.
T Consensus 30 v~V~~~~~~~~~ry 43 (91)
T d1fftb2 30 IPAILMAVGFAWKY 43 (91)
T ss_dssp THHHHHHHTTTTTT
T ss_pred HHHHHHHHhhheee
Confidence 34445444444333
Done!