BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019312
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A8T|A Chain A, Plant Adenylate Isopentenyltransferase In Complex With Atp
Length = 339
Score = 312 bits (799), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/305 (55%), Positives = 204/305 (66%), Gaps = 21/305 (6%)
Query: 57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116
+K+KL+V+MGATGTGKS LSIDLA F P E+INSDKMQVYKGLDITTNKI R VP
Sbjct: 38 RKEKLLVLMGATGTGKSRLSIDLAAHF-PLEVINSDKMQVYKGLDITTNKISVPDRGGVP 96
Query: 117 HHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGXX 176
HHLLGE P E TP DFR A A+S+I R+K P+LVGGSNSFI++LLV +D
Sbjct: 97 HHLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGP 156
Query: 177 XXXXXXXXXXXXXXXXYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRM 236
Y+CCFLWVD S+++L DYL KRVDDMLE GMF+ELAEF+ +
Sbjct: 157 GVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPEDE 216
Query: 237 RNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGE---WDPVRRGVYQEA------- 286
++ + GL KAIGVPEF+RYF+ + P VE GE D VRRG ++EA
Sbjct: 217 DHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVE--GEDPGRDRVRRGAFEEAVRAIKEN 274
Query: 287 ------RQIDKILKLERAGWDLRRLDATTAFRMLVNGDQEWRC--VWERQVVEPSVKIVK 338
RQI KIL+L+ AGWDLRRLDAT +FR + D +C +WE+QV+EPSVKIV
Sbjct: 275 TCHLAKRQIGKILRLKGAGWDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKIVS 334
Query: 339 RFLDE 343
RFLDE
Sbjct: 335 RFLDE 339
>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPH|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
Length = 409
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Query: 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHL 119
K++VI G TG GKS LSI LA +F E+INSD MQVYK + I TNK P +R +PHH+
Sbjct: 3 KVIVIAGTTGVGKSQLSIQLAQKF-NGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHV 61
Query: 120 LGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYD 172
+ V E+ F + NAI DI R K P++VGG++ ++ +L + D
Sbjct: 62 MNH-VDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVD 113
>pdb|3D3Q|A Chain A, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
pdb|3D3Q|B Chain B, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
Length = 340
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL 120
L+VI+G T +GK+ LSI++A +F EII+ D QVY+G DI T K+ + + +PH+ +
Sbjct: 9 LIVIVGPTASGKTELSIEVAKKF-NGEIISGDSXQVYQGXDIGTAKVTTEEXEGIPHYXI 67
Query: 121 GEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL 167
+ +P D F+ +F+ +A+ I DI R K P++ GG+ +I SLL
Sbjct: 68 -DILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLL 113
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 193 YNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFD 232
Y+ + ++ S + LY +NKRVD L G+F E+ +
Sbjct: 196 YDTLLIGIEXSRETLYLRINKRVDIXLGHGLFNEVQHLVE 235
>pdb|2QGN|A Chain A, Crystal Structure Of Trna Isopentenylpyrophosphate
Transferase (Bh2366) From Bacillus Halodurans, Northeast
Structural Genomics Consortium Target Bhr41.
pdb|3EXA|A Chain A, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|B Chain B, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|C Chain C, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|D Chain D, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41
Length = 322
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
K+KLV I+G T GK+ S+ LA R E+I+ D QVY+G DI T KI + + VPH
Sbjct: 2 KEKLVAIVGPTAVGKTKTSVXLAKRL-NGEVISGDSXQVYRGXDIGTAKITAEEXDGVPH 60
Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQ 169
HL+ P + F+ DF+ A I++I R + P LVGG+ ++ +++ Q
Sbjct: 61 HLIDIKDPSE-SFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQ 111
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 193 YNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAI 252
YN + + +LYD +N+RVD +E G+ +E + +D +R+ SV +AI
Sbjct: 190 YNLVXIGLTXERDVLYDRINRRVDQXVEEGLIDEAKKLYDRG-IRDCQSV-------QAI 241
Query: 253 GVPEFERYF 261
G E Y
Sbjct: 242 GYKEXYDYL 250
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHL 119
K + +MG T +GK+ L+I+L + P E+I+ D +YKG+DI T K + + PH L
Sbjct: 11 KAIFLMGPTASGKTALAIEL-RKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRL 69
Query: 120 LGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL 167
L P ++ DFR A ++DI + + PLLVGG+ + +LL
Sbjct: 70 LDIRDPSQA-YSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALL 116
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
Length = 316
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHL 119
K + + G T +GK+ L+I+L + P E+I+ D +YKG DI T K + + PH L
Sbjct: 11 KAIFLXGPTASGKTALAIEL-RKILPVELISVDSALIYKGXDIGTAKPNAEELLAAPHRL 69
Query: 120 LGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL 167
L P ++ DFR A +DI + + PLLVGG+ + +LL
Sbjct: 70 LDIRDPSQA-YSAADFRRDALAEXADITAAGRIPLLVGGTXLYFKALL 116
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 62 VVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLG 121
+ +MG T GK+ L++ LA P E+I+ D +Y+G+DI T K PH L+
Sbjct: 8 IFLMGPTAAGKTDLAMALAD-ALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLID 66
Query: 122 EFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL 167
P + ++ +FR A A++ +R + PLLVGG+ + +LL
Sbjct: 67 IRDPAE-SYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALL 111
>pdb|3BXZ|A Chain A, Crystal Structure Of The Isolated Dead Motor Domains From
Escherichia Coli Seca
pdb|3BXZ|B Chain B, Crystal Structure Of The Isolated Dead Motor Domains From
Escherichia Coli Seca
Length = 471
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 122 EFVPDDVEFTPDDFRLQ-------ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDR 173
+++ D++ F+P++ R+Q D S +I +TPL++ G+N + S+ Q Y R
Sbjct: 187 DYLRDNMAFSPEE-RVQRKLHYALVDEVDSILIDEARTPLIISGANQTLASITFQNYFR 244
>pdb|2HD1|A Chain A, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|2HD1|B Chain B, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|3K3E|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3E|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3H|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|3K3H|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|4GH6|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
pdb|4GH6|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
Length = 326
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 227 LAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPA-SVEVKGEWDPVRRGVYQE 285
+A F D D++ + +G +K + +P FE K++P + ++ W+ R Y+E
Sbjct: 258 VAPFMDRDKV---TKATAQIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWE--SRDRYEE 312
Query: 286 ARQIDKILK 294
++ID +K
Sbjct: 313 LKRIDDAMK 321
>pdb|3N3Z|A Chain A, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
pdb|3N3Z|B Chain B, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
Length = 326
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 227 LAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPA-SVEVKGEWDPVRRGVYQE 285
+A F D D++ + +G +K + +P FE K++P + ++ W+ R Y+E
Sbjct: 258 VAPFMDRDKV---TKATAQIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWE--SRDRYEE 312
Query: 286 ARQIDKILK 294
++ID +K
Sbjct: 313 LKRIDDAMK 321
>pdb|3DY8|A Chain A, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DY8|B Chain B, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DYL|A Chain A, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYL|B Chain B, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYN|A Chain A, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYN|B Chain B, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYQ|A Chain A, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYQ|B Chain B, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYS|A Chain A, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3DYS|B Chain B, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3JSI|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSI|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSW|A Chain A, Human Pde9 In Complex With Selective Inhibitor
pdb|3JSW|B Chain B, Human Pde9 In Complex With Selective Inhibitor
pdb|4E90|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitors
pdb|4E90|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitors
Length = 329
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 227 LAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPA-SVEVKGEWDPVRRGVYQE 285
+A F D D++ + +G +K + +P FE K++P + ++ W+ R Y+E
Sbjct: 261 VAPFMDRDKV---TKATAQIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWE--SRDRYEE 315
Query: 286 ARQIDKILK 294
++ID +K
Sbjct: 316 LKRIDDAMK 324
>pdb|4GP7|A Chain A, Polynucleotide Kinase
pdb|4GP7|B Chain B, Polynucleotide Kinase
Length = 171
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Query: 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSD 92
LVV++G++G+GKS + F P+E+I+SD
Sbjct: 11 LVVLIGSSGSGKSTFA---KKHFKPTEVISSD 39
>pdb|2YY2|A Chain A, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
pdb|2YY2|B Chain B, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
Length = 333
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 227 LAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPA-SVEVKGEWDPVRRGVYQE 285
+A F D D++ + +G +K + +P FE K++P + ++ W+ R Y+E
Sbjct: 265 VAPFMDRDKV---TKATAQIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWE--SRDRYEE 319
Query: 286 ARQIDKILK 294
++ID +K
Sbjct: 320 LKRIDDAMK 328
>pdb|4GP6|A Chain A, Polynucleotide Kinase
pdb|4GP6|B Chain B, Polynucleotide Kinase
Length = 171
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Query: 61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSD 92
LVV++G++G+GKS + F P+E+I+SD
Sbjct: 11 LVVLIGSSGSGKSTFA---KKHFKPTEVISSD 39
>pdb|3QI3|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI3|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI4|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
pdb|3QI4|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
Length = 533
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 227 LAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPA-SVEVKGEWDPVRRGVYQE 285
+A F D D++ + +G +K + +P FE K++P + ++ W+ R Y+E
Sbjct: 438 VAPFMDRDKV---TKATAEIGFIKFVLIPMFETVTKLFPMVEEIMLQPLWE--SRDRYEE 492
Query: 286 ARQIDKILK 294
++ID +K
Sbjct: 493 LKRIDDAMK 501
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified
Dna
Length = 916
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 58 KDKLVVIMGATGTGKSGLSID 78
K++LVVI G +G+GKS L++D
Sbjct: 23 KNRLVVITGVSGSGKSSLAMD 43
>pdb|3UAQ|A Chain A, Crystal Structure Of The N-Lobe Domain Of Lactoferrin
Binding Protein B (Lbpb) Of Moraxella Bovis
pdb|3UAQ|B Chain B, Crystal Structure Of The N-Lobe Domain Of Lactoferrin
Binding Protein B (Lbpb) Of Moraxella Bovis
Length = 341
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 209 DYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSV 242
++ NK D+ LE G + E AE + N+NSV
Sbjct: 299 NFFNKNADNRLEGGFYGENAEELAGKFLTNDNSV 332
>pdb|1YHT|A Chain A, Crystal Structure Analysis Of Dispersin B
Length = 367
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 68 TGTGKSGLSIDLATRFFPSEIINS--DKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVP 125
T T ++GL +D+A F+ E+I S D + + G + H+ + + HLL +
Sbjct: 14 TSTKQTGLMLDIARHFYSPEVIKSFIDTISL-SGGNFLHLHFSDHENYAIESHLLNQRAE 72
Query: 126 DDVE 129
+ V+
Sbjct: 73 NAVQ 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,606,579
Number of Sequences: 62578
Number of extensions: 383509
Number of successful extensions: 1163
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1130
Number of HSP's gapped (non-prelim): 28
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)